Citrus Sinensis ID: 025730
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 249 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FEW2 | 413 | Histidinol-phosphate amin | N/A | no | 0.887 | 0.535 | 0.721 | 1e-92 | |
| O82030 | 413 | Histidinol-phosphate amin | N/A | no | 0.887 | 0.535 | 0.716 | 5e-92 | |
| P0DI07 | 417 | Histidinol-phosphate amin | yes | no | 0.875 | 0.522 | 0.670 | 6e-84 | |
| B9DHD3 | 417 | Histidinol-phosphate amin | yes | no | 0.875 | 0.522 | 0.670 | 6e-84 | |
| A7NFV2 | 371 | Histidinol-phosphate amin | yes | no | 0.674 | 0.452 | 0.526 | 4e-45 | |
| A5V022 | 370 | Histidinol-phosphate amin | yes | no | 0.674 | 0.454 | 0.514 | 3e-44 | |
| Q3Z879 | 358 | Histidinol-phosphate amin | yes | no | 0.574 | 0.399 | 0.409 | 4e-29 | |
| A5FR29 | 358 | Histidinol-phosphate amin | yes | no | 0.574 | 0.399 | 0.375 | 7e-27 | |
| Q58365 | 373 | Histidinol-phosphate amin | yes | no | 0.662 | 0.442 | 0.4 | 8e-27 | |
| Q3ZXL8 | 358 | Histidinol-phosphate amin | yes | no | 0.574 | 0.399 | 0.375 | 1e-26 |
| >sp|Q9FEW2|HIS8_NICPL Histidinol-phosphate aminotransferase, chloroplastic OS=Nicotiana plumbaginifolia GN=HPA PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 339 bits (870), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/233 (72%), Positives = 194/233 (83%), Gaps = 12/233 (5%)
Query: 1 MGVIETSSSSSLCLLKSNFSSHPFVVPNRTVCPFQGNQRR-VIAMSSTLPVEQQVNEGQR 59
MGVIE ++SS+C+ ++N S C + NQRR +I M+S++PV+++ + QR
Sbjct: 1 MGVIELCNTSSICIGRANPSC----------CSIERNQRRRIICMASSVPVQEESQQKQR 50
Query: 60 RLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ 119
+TGD+FIR HL KL PYQPILPFEVLS +LGRKPEDIVK+DANENPYGPPPEV EALG
Sbjct: 51 -VTGDAFIRPHLLKLSPYQPILPFEVLSTRLGRKPEDIVKLDANENPYGPPPEVIEALGA 109
Query: 120 LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
+KFPYIYPDPESR LRAALA+DSGLES++IL GCGADELIDLIMRCVLDPGD IVDCPPT
Sbjct: 110 MKFPYIYPDPESRTLRAALAEDSGLESEYILAGCGADELIDLIMRCVLDPGDMIVDCPPT 169
Query: 180 FTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
FTMYEFDAAVNGA V+KVPR DFSL+VE IA+ VE EKPKCIFLTSPNNPDG
Sbjct: 170 FTMYEFDAAVNGAHVIKVPRNPDFSLDVERIAEVVEHEKPKCIFLTSPNNPDG 222
|
Nicotiana plumbaginifolia (taxid: 4092) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 9 |
| >sp|O82030|HIS8_TOBAC Histidinol-phosphate aminotransferase, chloroplastic OS=Nicotiana tabacum GN=HPA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (864), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 167/233 (71%), Positives = 193/233 (82%), Gaps = 12/233 (5%)
Query: 1 MGVIETSSSSSLCLLKSNFSSHPFVVPNRTVCPFQGNQRR-VIAMSSTLPVEQQVNEGQR 59
MGVIE ++SS+C+ ++ S C + NQRR +I M+S++PV+++ + QR
Sbjct: 1 MGVIELCNTSSICIGRAKPSC----------CSIERNQRRRIICMASSVPVQEESQQKQR 50
Query: 60 RLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ 119
+TGD+FIR HL KL PYQPILPFEVLS +LGRKPEDIVK+DANENPYGPPPEV EALG
Sbjct: 51 -VTGDAFIRPHLLKLSPYQPILPFEVLSTRLGRKPEDIVKLDANENPYGPPPEVIEALGA 109
Query: 120 LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
+KFPYIYPDPESR LRAALA+DSGLES++IL GCGADELIDLIMRCVLDPGD IVDCPPT
Sbjct: 110 MKFPYIYPDPESRTLRAALAEDSGLESEYILAGCGADELIDLIMRCVLDPGDMIVDCPPT 169
Query: 180 FTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
FTMYEFDAAVNGA V+KVPR DFSL+VE IA+ VE EKPKCIFLTSPNNPDG
Sbjct: 170 FTMYEFDAAVNGAHVIKVPRNPDFSLDVERIAEVVEHEKPKCIFLTSPNNPDG 222
|
Nicotiana tabacum (taxid: 4097) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|P0DI07|HIS8B_ARATH Histidinol-phosphate aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPA2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (794), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 161/240 (67%), Positives = 179/240 (74%), Gaps = 22/240 (9%)
Query: 1 MGVIETSSSSSLC-------LLKSNFSSHPFV-VPNRTVCPFQGNQRRVIAMSSTLPVEQ 52
MGVI S S L KS PF + NR C A SS+
Sbjct: 1 MGVINVQGSPSFSIHSSESNLRKSRALKKPFCSIRNRVYC----------AQSSS----A 46
Query: 53 QVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPE 112
V+E + GDSFIR HLR+L YQPILPFEVLS QLGRKPEDIVK+DANENPYGPPPE
Sbjct: 47 AVDESKNITMGDSFIRPHLRQLAAYQPILPFEVLSAQLGRKPEDIVKLDANENPYGPPPE 106
Query: 113 VREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK 172
V EALG +KFPY+YPDP+SRRLR ALA+DSGLES++ILVGCGADELIDLIMRCVLDPG+K
Sbjct: 107 VFEALGNMKFPYVYPDPQSRRLRDALAQDSGLESEYILVGCGADELIDLIMRCVLDPGEK 166
Query: 173 IVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
I+DCPPTF+MY FDAAVNGA V+KVPR DFSLNV+ IA+ VE EKPKCIFLTSPNNPDG
Sbjct: 167 IIDCPPTFSMYVFDAAVNGAGVIKVPRNPDFSLNVDRIAEVVELEKPKCIFLTSPNNPDG 226
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|B9DHD3|HIS8A_ARATH Histidinol-phosphate aminotransferase 1, chloroplastic OS=Arabidopsis thaliana GN=HPA1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (794), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 161/240 (67%), Positives = 179/240 (74%), Gaps = 22/240 (9%)
Query: 1 MGVIETSSSSSLC-------LLKSNFSSHPFV-VPNRTVCPFQGNQRRVIAMSSTLPVEQ 52
MGVI S S L KS PF + NR C A SS+
Sbjct: 1 MGVINVQGSPSFSIHSSESNLRKSRALKKPFCSIRNRVYC----------AQSSS----A 46
Query: 53 QVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPE 112
V+E + GDSFIR HLR+L YQPILPFEVLS QLGRKPEDIVK+DANENPYGPPPE
Sbjct: 47 AVDESKNITMGDSFIRPHLRQLAAYQPILPFEVLSAQLGRKPEDIVKLDANENPYGPPPE 106
Query: 113 VREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK 172
V EALG +KFPY+YPDP+SRRLR ALA+DSGLES++ILVGCGADELIDLIMRCVLDPG+K
Sbjct: 107 VFEALGNMKFPYVYPDPQSRRLRDALAQDSGLESEYILVGCGADELIDLIMRCVLDPGEK 166
Query: 173 IVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
I+DCPPTF+MY FDAAVNGA V+KVPR DFSLNV+ IA+ VE EKPKCIFLTSPNNPDG
Sbjct: 167 IIDCPPTFSMYVFDAAVNGAGVIKVPRNPDFSLNVDRIAEVVELEKPKCIFLTSPNNPDG 226
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|A7NFV2|HIS8_ROSCS Histidinol-phosphate aminotransferase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=hisC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 118/173 (68%), Gaps = 5/173 (2%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKF-- 122
+R + L+PY PI+P E L+ +LG E I+K+DANENPYGP P AL ++
Sbjct: 7 GLLRPDIAALEPYTPIVPLETLAERLGLPVERIIKLDANENPYGPSPRALAALAAVEHDA 66
Query: 123 PY---IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
P+ IYPDP+ RLRAAL++ G + I+ G G+DELIDLIMR VL PGD +VDCPPT
Sbjct: 67 PHRYAIYPDPDHTRLRAALSRYVGQPPERIICGAGSDELIDLIMRAVLRPGDVMVDCPPT 126
Query: 180 FTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F MY FDAA+ GA +V VPR F ++VE +A+AVER+ K +FL +PNNP G
Sbjct: 127 FAMYSFDAALYGARIVAVPRTEQFDVDVEGVAEAVERDGAKLLFLAAPNNPTG 179
|
Roseiflexus castenholzii (strain DSM 13941 / HLO8) (taxid: 383372) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|A5V022|HIS8_ROSS1 Histidinol-phosphate aminotransferase OS=Roseiflexus sp. (strain RS-1) GN=hisC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 117/173 (67%), Gaps = 5/173 (2%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLK--F 122
+R + L+PY PI+P E L+ +LG E I+K+DANENPYGP P AL ++
Sbjct: 7 GLLRPDIAALEPYTPIVPLETLAERLGLPVERIIKLDANENPYGPSPHALAALAAVERDA 66
Query: 123 PY---IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
P+ IYPDP+ RLRAAL++ G + I+ G G+DELIDL+MR L PGD ++DCPPT
Sbjct: 67 PHRYAIYPDPDHVRLRAALSRYIGQPPERIICGAGSDELIDLLMRATLRPGDTMIDCPPT 126
Query: 180 FTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F MY FDAA+ GA VV VPR F +++E +A+AVERE K +FL +PNNP G
Sbjct: 127 FAMYSFDAALYGARVVPVPRTDQFDVDIEGVAEAVEREGAKLLFLAAPNNPTG 179
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Roseiflexus sp. (strain RS-1) (taxid: 357808) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q3Z879|HIS8_DEHE1 Histidinol-phosphate aminotransferase OS=Dehalococcoides ethenogenes (strain 195) GN=hisC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 93/144 (64%), Gaps = 1/144 (0%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDH 148
+L + I+K+DANEN YG P V++A+ +IYPD +R LA+ +G+ +
Sbjct: 26 ELVKTKNRIIKLDANENLYGAAPTVQKAMSTFDQYHIYPDATQFEIRRLLAEYTGVNMEQ 85
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
I+ G G+D+LIDL++R ++PGD++++CPPTF MY+F +N VV VPR + + +N+
Sbjct: 86 IICGAGSDQLIDLLLRLFINPGDEVINCPPTFAMYKFYTDLNRGTVVNVPRDAGYDVNIG 145
Query: 209 LIADAVEREKPKCIFLTSPNNPDG 232
I +A+ K K IF+ +PNNP G
Sbjct: 146 GIKNALT-PKTKLIFIAAPNNPTG 168
|
Dehalococcoides ethenogenes (strain 195) (taxid: 243164) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|A5FR29|HIS8_DEHSB Histidinol-phosphate aminotransferase OS=Dehalococcoides sp. (strain BAV1) GN=hisC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDH 148
+L + + I+K+DANEN YG P VR+A+ + +IYPD +R L++ +G+ +
Sbjct: 26 ELVKTSKQIIKLDANENLYGAAPTVRQAMSEFNQYHIYPDATQSEIRRLLSEYTGVAVEQ 85
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
I+ G G+D+LIDL++R ++PGD++++CPPTF MY+F +N +V VPR + ++
Sbjct: 86 IVCGAGSDQLIDLLLRLFINPGDEVINCPPTFAMYKFYTELNRGKIVNVPRDASYN-INI 144
Query: 209 LIADAVEREKPKCIFLTSPNNPDG 232
+ + K IF+ +PNNP G
Sbjct: 145 AAINNAITPQTKLIFIAAPNNPTG 168
|
Dehalococcoides sp. (strain BAV1) (taxid: 216389) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q58365|HIS8_METJA Histidinol-phosphate aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=hisC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 106/170 (62%), Gaps = 5/170 (2%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREA-LGQLKFPYI 125
+R ++KLKPY P E ++ G KPEDI+K+ +NENP+GP P+++E L ++ +
Sbjct: 10 VRDVVKKLKPYVPGKSKEEIARAYGIKPEDIIKLGSNENPWGPSPKIKEKILDEIDKIHQ 69
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGC-GADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
YP+P + L L+K ++ ++I+VG GADE+ID I R +D GD+++ PTFT Y
Sbjct: 70 YPEPVNPILMKELSKFLNVDEENIIVGGDGADEIIDTIFRTFVDDGDEVIIPIPTFTQYR 129
Query: 185 FDAAVNGAAV--VKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A ++ A + K ++ DF LNVE + + + +K K IFL +PNNP G
Sbjct: 130 VSATIHNAKIKYAKYDKEKDFKLNVESVLNNI-TDKTKVIFLCTPNNPTG 178
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q3ZXL8|HIS8_DEHSC Histidinol-phosphate aminotransferase OS=Dehalococcoides sp. (strain CBDB1) GN=hisC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDH 148
+L + + I+K+DANEN YG P VR+A+ + +IYPD +R L++ +G+ +
Sbjct: 26 ELVKTSKLIIKLDANENLYGAAPTVRQAMAEFNQYHIYPDATQSEIRRLLSEYTGVAVEQ 85
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
I+ G G+D+LIDL++R ++PGD++++CPPTF MY+F +N +V VPR + ++
Sbjct: 86 IVCGAGSDQLIDLLLRLFINPGDEVINCPPTFAMYKFYTELNRGKIVNVPRDASYN-INI 144
Query: 209 LIADAVEREKPKCIFLTSPNNPDG 232
+ + K IF+ +PNNP G
Sbjct: 145 AAINNAITPQTKLIFIAAPNNPTG 168
|
Dehalococcoides sp. (strain CBDB1) (taxid: 255470) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 249 | ||||||
| 255564464 | 423 | histidinol-phosphate aminotransferase, p | 0.927 | 0.546 | 0.789 | 1e-103 | |
| 356559575 | 424 | PREDICTED: histidinol-phosphate aminotra | 0.927 | 0.544 | 0.747 | 7e-97 | |
| 359493094 | 421 | PREDICTED: histidinol-phosphate aminotra | 0.923 | 0.546 | 0.75 | 7e-97 | |
| 255647696 | 394 | unknown [Glycine max] | 0.927 | 0.586 | 0.743 | 8e-96 | |
| 51316088 | 413 | RecName: Full=Histidinol-phosphate amino | 0.887 | 0.535 | 0.721 | 6e-91 | |
| 51315816 | 413 | RecName: Full=Histidinol-phosphate amino | 0.887 | 0.535 | 0.716 | 3e-90 | |
| 449496869 | 421 | PREDICTED: histidinol-phosphate aminotra | 0.895 | 0.529 | 0.715 | 6e-90 | |
| 449465360 | 421 | PREDICTED: histidinol-phosphate aminotra | 0.895 | 0.529 | 0.715 | 6e-90 | |
| 444436459 | 211 | HPA-like protein, partial [Eucalyptus cl | 0.755 | 0.890 | 0.835 | 1e-87 | |
| 296081156 | 375 | unnamed protein product [Vitis vinifera] | 0.738 | 0.490 | 0.843 | 4e-87 |
| >gi|255564464|ref|XP_002523228.1| histidinol-phosphate aminotransferase, putative [Ricinus communis] gi|223537524|gb|EEF39149.1| histidinol-phosphate aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/233 (78%), Positives = 201/233 (86%), Gaps = 2/233 (0%)
Query: 1 MGVIETSSSSSLCLLKSNFSSHPFVVPNRTVCPFQ-GNQRRVIAMSSTLPVEQQVNEGQR 59
MGVI+ +++SLCL+KS+ S H ++P R +C F+ N+RRVIAM+S PVE +NE Q
Sbjct: 1 MGVIDIYNTASLCLIKSSHSLHQSLLPQRRICSFEVNNRRRVIAMASFTPVEH-INEAQE 59
Query: 60 RLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ 119
R+ GDSFIRSHLRKL PYQPILPFEVLS LGRKPEDIVK+DANENPYGPPPE EALG
Sbjct: 60 RVAGDSFIRSHLRKLSPYQPILPFEVLSASLGRKPEDIVKLDANENPYGPPPEATEALGS 119
Query: 120 LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
LKFPYIYPDPESRRLR ALAKDS LES+HILVGCGADELIDLIMRC LDPGDKIVDCPPT
Sbjct: 120 LKFPYIYPDPESRRLREALAKDSDLESNHILVGCGADELIDLIMRCTLDPGDKIVDCPPT 179
Query: 180 FTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
FTMYEFDAAVNGA V+KV RK DFSLNVELI DAV REKPKCIFLTSPNNPDG
Sbjct: 180 FTMYEFDAAVNGAEVIKVMRKPDFSLNVELIVDAVLREKPKCIFLTSPNNPDG 232
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559575|ref|XP_003548074.1| PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 175/234 (74%), Positives = 203/234 (86%), Gaps = 3/234 (1%)
Query: 1 MGVIETSSSSSLCLLKSNFSSHPFV-VPNRTVCPFQGN-QRRVIAMSSTLPVEQQVNEGQ 58
MGVI+ ++ +LC +KSN + V + R +C F+GN QR+ +AM+ST+PVEQ VN G
Sbjct: 1 MGVIDFYNTGALCWVKSNANLKQQVGLAPRPICSFEGNNQRKFVAMASTVPVEQ-VNNGP 59
Query: 59 RRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALG 118
++TGDSFIR HLRKL PYQPILPFEVLS +LGRKPEDIVK+DANENPYGPPPEV EALG
Sbjct: 60 LQVTGDSFIREHLRKLAPYQPILPFEVLSARLGRKPEDIVKLDANENPYGPPPEVMEALG 119
Query: 119 QLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
++FPY+YPDPESRRLRAALA DSGLE+++IL GCGADELIDLIMRCVLDPGDKIVDCPP
Sbjct: 120 SMQFPYVYPDPESRRLRAALAHDSGLEAEYILAGCGADELIDLIMRCVLDPGDKIVDCPP 179
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
TFTMYEFDAAVNGA V+KVPR+ DFSLNVE IA+ V++EKPKCIFLTSPNNPDG
Sbjct: 180 TFTMYEFDAAVNGALVIKVPRRPDFSLNVEQIAEVVKQEKPKCIFLTSPNNPDG 233
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493094|ref|XP_003634508.1| PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 174/232 (75%), Positives = 195/232 (84%), Gaps = 2/232 (0%)
Query: 1 MGVIETSSSSSLCLLKSNFSSHPFVVPNRTVCPFQGNQRRVIAMSSTLPVEQQVNEGQRR 60
MGVI SSLC++K N H + P +C F+G ++ V M+S +PV +Q +E Q R
Sbjct: 1 MGVINIYDISSLCVVKHNTDIH-LLEPRAPICSFEGRRKGVTCMTSAMPV-KQASEVQER 58
Query: 61 LTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQL 120
LTGDSFIR HL+ L PYQPILPFEVLS +LGRKPEDIVK+DANENPYGPPPEV EALG L
Sbjct: 59 LTGDSFIRPHLKNLSPYQPILPFEVLSSRLGRKPEDIVKLDANENPYGPPPEVFEALGSL 118
Query: 121 KFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF 180
KFPY+YPDPESRRLR ALA+DSG+ESD+IL GCGADELIDLIMRCVLDPGDKIVDCPPTF
Sbjct: 119 KFPYVYPDPESRRLRGALAEDSGIESDYILAGCGADELIDLIMRCVLDPGDKIVDCPPTF 178
Query: 181 TMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
TMYEFDAAVNGA V+KVPR SDFSLN+E IAD VE+EKPKCIFLTSPNNPDG
Sbjct: 179 TMYEFDAAVNGALVLKVPRNSDFSLNLEAIADVVEKEKPKCIFLTSPNNPDG 230
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647696|gb|ACU24309.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 174/234 (74%), Positives = 202/234 (86%), Gaps = 3/234 (1%)
Query: 1 MGVIETSSSSSLCLLKSNFSSHPFV-VPNRTVCPFQGN-QRRVIAMSSTLPVEQQVNEGQ 58
MGVI+ ++ +LC +KSN + V + R +C F+GN QR+ +AM+ST+PVEQ VN G
Sbjct: 1 MGVIDFYNTGALCWVKSNANLKQQVGLAPRPICSFEGNNQRKFVAMASTVPVEQ-VNNGP 59
Query: 59 RRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALG 118
++TGDSFIR HLRKL PYQPILPFEVLS +LGRKPEDIVK+DANENPYGPPPEV EALG
Sbjct: 60 LQVTGDSFIREHLRKLAPYQPILPFEVLSARLGRKPEDIVKLDANENPYGPPPEVMEALG 119
Query: 119 QLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
++FPY+YPDPESRRLRAALA DSGLE+++IL GCGADELIDLIMRCVLDPGDKIVDCPP
Sbjct: 120 SMQFPYVYPDPESRRLRAALAHDSGLEAEYILAGCGADELIDLIMRCVLDPGDKIVDCPP 179
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
TFTMYEFDAAVNGA V+KVPR+ DFSLNVE IA+ V++EKPKCIFLTSPNNP G
Sbjct: 180 TFTMYEFDAAVNGALVIKVPRRPDFSLNVEQIAEVVKQEKPKCIFLTSPNNPGG 233
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|51316088|sp|Q9FEW2.1|HIS8_NICPL RecName: Full=Histidinol-phosphate aminotransferase, chloroplastic; AltName: Full=Imidazole acetol-phosphate transaminase; Flags: Precursor gi|12055099|emb|CAC20728.1| histidinol phosphate aminotransferase [Nicotiana plumbaginifolia] | Back alignment and taxonomy information |
|---|
Score = 339 bits (870), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 168/233 (72%), Positives = 194/233 (83%), Gaps = 12/233 (5%)
Query: 1 MGVIETSSSSSLCLLKSNFSSHPFVVPNRTVCPFQGNQRR-VIAMSSTLPVEQQVNEGQR 59
MGVIE ++SS+C+ ++N S C + NQRR +I M+S++PV+++ + QR
Sbjct: 1 MGVIELCNTSSICIGRANPSC----------CSIERNQRRRIICMASSVPVQEESQQKQR 50
Query: 60 RLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ 119
+TGD+FIR HL KL PYQPILPFEVLS +LGRKPEDIVK+DANENPYGPPPEV EALG
Sbjct: 51 -VTGDAFIRPHLLKLSPYQPILPFEVLSTRLGRKPEDIVKLDANENPYGPPPEVIEALGA 109
Query: 120 LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
+KFPYIYPDPESR LRAALA+DSGLES++IL GCGADELIDLIMRCVLDPGD IVDCPPT
Sbjct: 110 MKFPYIYPDPESRTLRAALAEDSGLESEYILAGCGADELIDLIMRCVLDPGDMIVDCPPT 169
Query: 180 FTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
FTMYEFDAAVNGA V+KVPR DFSL+VE IA+ VE EKPKCIFLTSPNNPDG
Sbjct: 170 FTMYEFDAAVNGAHVIKVPRNPDFSLDVERIAEVVEHEKPKCIFLTSPNNPDG 222
|
Source: Nicotiana plumbaginifolia Species: Nicotiana plumbaginifolia Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|51315816|sp|O82030.1|HIS8_TOBAC RecName: Full=Histidinol-phosphate aminotransferase, chloroplastic; AltName: Full=Imidazole acetol-phosphate transaminase; Flags: Precursor gi|3355626|emb|CAA70403.1| histidinol-phosphate aminotransferase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 167/233 (71%), Positives = 193/233 (82%), Gaps = 12/233 (5%)
Query: 1 MGVIETSSSSSLCLLKSNFSSHPFVVPNRTVCPFQGNQRR-VIAMSSTLPVEQQVNEGQR 59
MGVIE ++SS+C+ ++ S C + NQRR +I M+S++PV+++ + QR
Sbjct: 1 MGVIELCNTSSICIGRAKPSC----------CSIERNQRRRIICMASSVPVQEESQQKQR 50
Query: 60 RLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ 119
+TGD+FIR HL KL PYQPILPFEVLS +LGRKPEDIVK+DANENPYGPPPEV EALG
Sbjct: 51 -VTGDAFIRPHLLKLSPYQPILPFEVLSTRLGRKPEDIVKLDANENPYGPPPEVIEALGA 109
Query: 120 LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
+KFPYIYPDPESR LRAALA+DSGLES++IL GCGADELIDLIMRCVLDPGD IVDCPPT
Sbjct: 110 MKFPYIYPDPESRTLRAALAEDSGLESEYILAGCGADELIDLIMRCVLDPGDMIVDCPPT 169
Query: 180 FTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
FTMYEFDAAVNGA V+KVPR DFSL+VE IA+ VE EKPKCIFLTSPNNPDG
Sbjct: 170 FTMYEFDAAVNGAHVIKVPRNPDFSLDVERIAEVVEHEKPKCIFLTSPNNPDG 222
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449496869|ref|XP_004160249.1| PREDICTED: histidinol-phosphate aminotransferase 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 171/239 (71%), Positives = 191/239 (79%), Gaps = 16/239 (6%)
Query: 1 MGVIETSSSSSLCLLK-------SNFSSHPFVVPNRTVCPFQGNQRRVIAMSSTLPVEQQ 53
M VI S+ + CLLK S SSH R C G ++ V+ M+S +P
Sbjct: 1 MAVIHISNPTQ-CLLKFKTNLPASEPSSH------RPNCSVAGRRKWVVNMTSQIPA--H 51
Query: 54 VNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEV 113
V E Q+ LTGDSFIR HLRKL PYQPILPFEVLS +LGRKPEDI+K+DANENPYGPPP+V
Sbjct: 52 VQETQQSLTGDSFIRPHLRKLSPYQPILPFEVLSTRLGRKPEDIIKLDANENPYGPPPDV 111
Query: 114 REALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKI 173
EALG +KFP++YPDPESR+LRAALA DSGLESD+ILVGCGADELIDLIMRCVLDPGDKI
Sbjct: 112 LEALGTMKFPHVYPDPESRQLRAALAIDSGLESDYILVGCGADELIDLIMRCVLDPGDKI 171
Query: 174 VDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
VDCPPTFTMYEFDAAVNGA V+KVPRK DFSLNV+LI D V +EKPKCIFLTSPNNPDG
Sbjct: 172 VDCPPTFTMYEFDAAVNGALVIKVPRKPDFSLNVDLIEDVVRKEKPKCIFLTSPNNPDG 230
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465360|ref|XP_004150396.1| PREDICTED: histidinol-phosphate aminotransferase 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 171/239 (71%), Positives = 191/239 (79%), Gaps = 16/239 (6%)
Query: 1 MGVIETSSSSSLCLLK-------SNFSSHPFVVPNRTVCPFQGNQRRVIAMSSTLPVEQQ 53
M VI S+ + CLLK S SSH R C G ++ V+ M+S +P
Sbjct: 1 MAVIHISNPTQ-CLLKFKTNLPASEPSSH------RPNCSVAGRRKWVVNMTSQIPA--H 51
Query: 54 VNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEV 113
V E Q+ LTGDSFIR HLRKL PYQPILPFEVLS +LGRKPEDI+K+DANENPYGPPP+V
Sbjct: 52 VQETQQSLTGDSFIRPHLRKLSPYQPILPFEVLSTRLGRKPEDIIKLDANENPYGPPPDV 111
Query: 114 REALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKI 173
EALG +KFP++YPDPESR+LRAALA DSGLESD+ILVGCGADELIDLIMRCVLDPGDKI
Sbjct: 112 LEALGTMKFPHVYPDPESRQLRAALAIDSGLESDYILVGCGADELIDLIMRCVLDPGDKI 171
Query: 174 VDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
VDCPPTFTMYEFDAAVNGA V+KVPRK DFSLNV+LI D V +EKPKCIFLTSPNNPDG
Sbjct: 172 VDCPPTFTMYEFDAAVNGALVIKVPRKPDFSLNVDLIEDVVRKEKPKCIFLTSPNNPDG 230
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|444436459|gb|AGE09597.1| HPA-like protein, partial [Eucalyptus cladocalyx] | Back alignment and taxonomy information |
|---|
Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 157/188 (83%), Positives = 167/188 (88%)
Query: 54 VNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEV 113
++E R LTGDSFIR HLRKL PYQPILPFEVLS +LGRKPEDI+K+DANENPYGPPPEV
Sbjct: 1 LSEANRELTGDSFIRPHLRKLSPYQPILPFEVLSTRLGRKPEDIIKLDANENPYGPPPEV 60
Query: 114 REALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKI 173
EALG +KFPYIYPDPESRRLRAALA DSGLE+D+IL GCGADELIDLIMRCVLDPGDKI
Sbjct: 61 FEALGSMKFPYIYPDPESRRLRAALAVDSGLEADYILAGCGADELIDLIMRCVLDPGDKI 120
Query: 174 VDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233
VDCPPTFTMYEFDAAVNGA V+KVPRK DFSLNVELIADAVE+E PKCIFLTSPNNPDG
Sbjct: 121 VDCPPTFTMYEFDAAVNGAHVIKVPRKPDFSLNVELIADAVEKENPKCIFLTSPNNPDGS 180
Query: 234 FSWTSSWI 241
I
Sbjct: 181 IIGDEDLI 188
|
Source: Eucalyptus cladocalyx Species: Eucalyptus cladocalyx Genus: Eucalyptus Family: Myrtaceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081156|emb|CBI18182.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 156/185 (84%), Positives = 169/185 (91%), Gaps = 1/185 (0%)
Query: 48 LPVEQQVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPY 107
+PV +Q +E Q RLTGDSFIR HL+ L PYQPILPFEVLS +LGRKPEDIVK+DANENPY
Sbjct: 1 MPV-KQASEVQERLTGDSFIRPHLKNLSPYQPILPFEVLSSRLGRKPEDIVKLDANENPY 59
Query: 108 GPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVL 167
GPPPEV EALG LKFPY+YPDPESRRLR ALA+DSG+ESD+IL GCGADELIDLIMRCVL
Sbjct: 60 GPPPEVFEALGSLKFPYVYPDPESRRLRGALAEDSGIESDYILAGCGADELIDLIMRCVL 119
Query: 168 DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSP 227
DPGDKIVDCPPTFTMYEFDAAVNGA V+KVPR SDFSLN+E IAD VE+EKPKCIFLTSP
Sbjct: 120 DPGDKIVDCPPTFTMYEFDAAVNGALVLKVPRNSDFSLNLEAIADVVEKEKPKCIFLTSP 179
Query: 228 NNPDG 232
NNPDG
Sbjct: 180 NNPDG 184
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 249 | ||||||
| TAIR|locus:2016099 | 417 | HISN6B "HISTIDINE BIOSYNTHESIS | 0.791 | 0.472 | 0.745 | 1.3e-77 | |
| TAIR|locus:2145382 | 417 | HPA1 "histidinol phosphate ami | 0.791 | 0.472 | 0.745 | 1.3e-77 | |
| TIGR_CMR|DET_0843 | 358 | DET_0843 "histidinol-phosphate | 0.574 | 0.399 | 0.409 | 3.1e-28 | |
| TIGR_CMR|CHY_1929 | 362 | CHY_1929 "histidinol-phosphate | 0.650 | 0.447 | 0.356 | 1.7e-20 | |
| TIGR_CMR|BA_1539 | 370 | BA_1539 "histidinol-phosphate | 0.658 | 0.443 | 0.331 | 4.8e-20 | |
| TIGR_CMR|CHY_1086 | 349 | CHY_1086 "histidinol-phosphate | 0.618 | 0.441 | 0.339 | 1.8e-18 | |
| TIGR_CMR|DET_0655 | 368 | DET_0655 "histidinol-phosphate | 0.658 | 0.445 | 0.305 | 4.4e-18 | |
| TIGR_CMR|DET_0689 | 368 | DET_0689 "histidinol-phosphate | 0.658 | 0.445 | 0.305 | 4.4e-18 | |
| TIGR_CMR|SPO_3177 | 361 | SPO_3177 "histidinol-phosphate | 0.542 | 0.373 | 0.333 | 8.8e-18 | |
| TIGR_CMR|BA_2955 | 366 | BA_2955 "histidinol-phosphate | 0.658 | 0.448 | 0.307 | 2.7e-17 |
| TAIR|locus:2016099 HISN6B "HISTIDINE BIOSYNTHESIS 6B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 149/200 (74%), Positives = 167/200 (83%)
Query: 33 PFQGNQRRVIAMSSTLPVEQQVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGR 92
PF + RV S+ V+E + GDSFIR HLR+L YQPILPFEVLS QLGR
Sbjct: 30 PFCSIRNRVYCAQSS---SAAVDESKNITMGDSFIRPHLRQLAAYQPILPFEVLSAQLGR 86
Query: 93 KPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVG 152
KPEDIVK+DANENPYGPPPEV EALG +KFPY+YPDP+SRRLR ALA+DSGLES++ILVG
Sbjct: 87 KPEDIVKLDANENPYGPPPEVFEALGNMKFPYVYPDPQSRRLRDALAQDSGLESEYILVG 146
Query: 153 CGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIAD 212
CGADELIDLIMRCVLDPG+KI+DCPPTF+MY FDAAVNGA V+KVPR DFSLNV+ IA+
Sbjct: 147 CGADELIDLIMRCVLDPGEKIIDCPPTFSMYVFDAAVNGAGVIKVPRNPDFSLNVDRIAE 206
Query: 213 AVEREKPKCIFLTSPNNPDG 232
VE EKPKCIFLTSPNNPDG
Sbjct: 207 VVELEKPKCIFLTSPNNPDG 226
|
|
| TAIR|locus:2145382 HPA1 "histidinol phosphate aminotransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 149/200 (74%), Positives = 167/200 (83%)
Query: 33 PFQGNQRRVIAMSSTLPVEQQVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGR 92
PF + RV S+ V+E + GDSFIR HLR+L YQPILPFEVLS QLGR
Sbjct: 30 PFCSIRNRVYCAQSS---SAAVDESKNITMGDSFIRPHLRQLAAYQPILPFEVLSAQLGR 86
Query: 93 KPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVG 152
KPEDIVK+DANENPYGPPPEV EALG +KFPY+YPDP+SRRLR ALA+DSGLES++ILVG
Sbjct: 87 KPEDIVKLDANENPYGPPPEVFEALGNMKFPYVYPDPQSRRLRDALAQDSGLESEYILVG 146
Query: 153 CGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIAD 212
CGADELIDLIMRCVLDPG+KI+DCPPTF+MY FDAAVNGA V+KVPR DFSLNV+ IA+
Sbjct: 147 CGADELIDLIMRCVLDPGEKIIDCPPTFSMYVFDAAVNGAGVIKVPRNPDFSLNVDRIAE 206
Query: 213 AVEREKPKCIFLTSPNNPDG 232
VE EKPKCIFLTSPNNPDG
Sbjct: 207 VVELEKPKCIFLTSPNNPDG 226
|
|
| TIGR_CMR|DET_0843 DET_0843 "histidinol-phosphate aminotransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 59/144 (40%), Positives = 93/144 (64%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDH 148
+L + I+K+DANEN YG P V++A+ +IYPD +R LA+ +G+ +
Sbjct: 26 ELVKTKNRIIKLDANENLYGAAPTVQKAMSTFDQYHIYPDATQFEIRRLLAEYTGVNMEQ 85
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
I+ G G+D+LIDL++R ++PGD++++CPPTF MY+F +N VV VPR + + +N+
Sbjct: 86 IICGAGSDQLIDLLLRLFINPGDEVINCPPTFAMYKFYTDLNRGTVVNVPRDAGYDVNIG 145
Query: 209 LIADAVEREKPKCIFLTSPNNPDG 232
I +A+ K K IF+ +PNNP G
Sbjct: 146 GIKNALT-PKTKLIFIAAPNNPTG 168
|
|
| TIGR_CMR|CHY_1929 CHY_1929 "histidinol-phosphate aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 61/171 (35%), Positives = 100/171 (58%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQL--KFPY 124
+R L LKPY P P E + +LG +I K+ +NEN +G P+V A+ + K Y
Sbjct: 2 VRKALENLKPYVPGKPVEEVERELGIT--NIDKLASNENLWGISPKVAAAIKEAVDKVNY 59
Query: 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
YPD + RL+ +A G+ D+I++G G+DEL+ + ++DPGD+ + P+F YE
Sbjct: 60 -YPDGGAFRLKEKIAAKYGVTPDNIILGNGSDELVMFLAMALIDPGDEAIMPVPSFPRYE 118
Query: 185 -FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
+NG A ++P K + L+++ +A+AV EK + ++L +PNNP G +
Sbjct: 119 PVVTMMNGIAR-EIPLK-EHRLDLKTMAEAVN-EKTRLVYLCNPNNPTGTY 166
|
|
| TIGR_CMR|BA_1539 BA_1539 "histidinol-phosphate aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 4.8e-20, P = 4.8e-20
Identities = 56/169 (33%), Positives = 91/169 (53%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPY-I 125
++ L L+ Y P E + + G IVK+ +NENP+G V EAL L Y +
Sbjct: 3 VKEQLLTLRAYVPGKNIEEVKREYGLSK--IVKLASNENPFGCSARVTEALTSLASQYAL 60
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD + LR +AK G++++ +L G G DE+I +I R +L G +V PTF+ Y
Sbjct: 61 YPDGHAFELRTQVAKHLGVKAEQLLFGSGLDEVIQMISRALLHEGTNVVMANPTFSQYHH 120
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
A + GA V +V K +++ + V+ ++ K +++ +PNNP G +
Sbjct: 121 HAVIEGAEVREVSLKDGIH-DLDAMLQQVD-DQTKIVWICNPNNPTGTY 167
|
|
| TIGR_CMR|CHY_1086 CHY_1086 "histidinol-phosphate aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 58/171 (33%), Positives = 91/171 (53%)
Query: 66 FIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPP----EVREALGQLK 121
+ + +LKPY+P L +S + +K+DANENPY P E+ +G
Sbjct: 6 YFKEAFAQLKPYEPHL----VSYE--------IKLDANENPYLFPKSLLEEIFSKIGTRD 53
Query: 122 FPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT 181
FP +YPDP + RLR L++ G+ ++I++G G+DELI + G + P+F
Sbjct: 54 FP-LYPDPLAGRLRIRLSEKLGVLPENIVLGNGSDELILCLYLAFGGYGRIALSFSPSFV 112
Query: 182 MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
MY A V +V + DFSL+++ A+E+ +P +FL +PNNP G
Sbjct: 113 MYRHHAFVTQTEFFEVSYRDDFSLDLDETKKAIEKYQPHLVFLANPNNPTG 163
|
|
| TIGR_CMR|DET_0655 DET_0655 "histidinol-phosphate aminotransferase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 51/167 (30%), Positives = 87/167 (52%)
Query: 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYP 127
+ + KLKP P +LG P+ ++ + NPY P E++ AL L YP
Sbjct: 6 KPQVEKLKPCYHGGPNYAELRKLGISPDAVMDFSVSSNPYPAPVELKNALCSLVIDR-YP 64
Query: 128 DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA 187
D +S L+ LA L+ +++++G G+ E+I L+ GD ++ PTF YE A
Sbjct: 65 DSDSAELKEYLAGRLSLKPENLIMGNGSMEIIRLVAGAYFGVGDTVLILKPTFGEYELAA 124
Query: 188 AVNGAAVVK--VPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
V GA +++ +S F +++L +++ +PK +F+ +PNNP G
Sbjct: 125 EVAGADIIEQWADEESGFKFDLDLTCRIIKKHQPKAVFICNPNNPTG 171
|
|
| TIGR_CMR|DET_0689 DET_0689 "histidinol-phosphate aminotransferase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 51/167 (30%), Positives = 87/167 (52%)
Query: 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYP 127
+ + KLKP P +LG P+ ++ + NPY P E++ AL L YP
Sbjct: 6 KPQVEKLKPCYHGGPNYAELRKLGISPDAVMDFSVSSNPYPAPVELKNALCSLVIDR-YP 64
Query: 128 DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA 187
D +S L+ LA L+ +++++G G+ E+I L+ GD ++ PTF YE A
Sbjct: 65 DSDSAELKEYLAGRLSLKPENLIMGNGSMEIIRLVAGAYFGVGDTVLILKPTFGEYELAA 124
Query: 188 AVNGAAVVK--VPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
V GA +++ +S F +++L +++ +PK +F+ +PNNP G
Sbjct: 125 EVAGADIIEQWADEESGFKFDLDLTCRIIKKHQPKAVFICNPNNPTG 171
|
|
| TIGR_CMR|SPO_3177 SPO_3177 "histidinol-phosphate aminotransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 8.8e-18, P = 8.8e-18
Identities = 46/138 (33%), Positives = 77/138 (55%)
Query: 96 DIVKIDANENPYGPPPEVREAL-GQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCG 154
+++K+ +NENP GP P EA+ + YP + LRAA+ GL+ D I+ G G
Sbjct: 28 NVIKLSSNENPLGPSPAAVEAIRATAAQAHRYPSTDHAELRAAIGAVHGLDPDRIICGVG 87
Query: 155 ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAV 214
+DE++ + + PGD+++ F+MY A + GA V+VP + ++V+ I AV
Sbjct: 88 SDEVLQFVAQAYTGPGDEVIHTEHGFSMYPILARMAGATPVQVPERQRV-VDVDAILAAV 146
Query: 215 EREKPKCIFLTSPNNPDG 232
++ + +FL +P NP G
Sbjct: 147 N-DRTRLVFLANPANPTG 163
|
|
| TIGR_CMR|BA_2955 BA_2955 "histidinol-phosphate aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 52/169 (30%), Positives = 86/169 (50%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPY-I 125
++ L L+PY+P E + G VK+ +NENP+G P V + L + + +
Sbjct: 3 VKDQLSSLQPYKPGKSPEQMKEVYG--DHSFVKLASNENPFGCSPRVLDELQKSWLDHAL 60
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD + LR +A ++ + +L G G DE+I +I R VL GD IV TF Y
Sbjct: 61 YPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQMISRAVLKAGDNIVTAGATFPQYRH 120
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
A + G V +V + +++ I+ V+ + K +++ +PNNP G +
Sbjct: 121 HAIIEGCEVKEVALNNGV-YDLDEISSVVDNDT-KIVWICNPNNPTGTY 167
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.766 |
| 4th Layer | 2.6.1.9 | 0.824 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 249 | |||
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 1e-119 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 1e-50 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 2e-48 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 1e-45 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 3e-41 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 7e-41 | |
| PRK04870 | 356 | PRK04870, PRK04870, histidinol-phosphate aminotran | 2e-32 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 7e-31 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 6e-30 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 7e-30 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 5e-28 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 9e-25 | |
| PRK03317 | 368 | PRK03317, PRK03317, histidinol-phosphate aminotran | 2e-23 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 3e-23 | |
| PRK08153 | 369 | PRK08153, PRK08153, histidinol-phosphate aminotran | 4e-23 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 3e-21 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 5e-21 | |
| PRK04781 | 364 | PRK04781, PRK04781, histidinol-phosphate aminotran | 2e-20 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 3e-20 | |
| PRK05387 | 353 | PRK05387, PRK05387, histidinol-phosphate aminotran | 4e-20 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 7e-20 | |
| PRK02610 | 374 | PRK02610, PRK02610, histidinol-phosphate aminotran | 4e-19 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 1e-16 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 1e-16 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 2e-16 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 2e-15 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 2e-14 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 4e-14 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 4e-13 | |
| PRK07392 | 360 | PRK07392, PRK07392, threonine-phosphate decarboxyl | 6e-13 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 8e-11 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 5e-10 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 6e-10 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 6e-10 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 9e-10 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 3e-09 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 6e-08 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 6e-08 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 1e-07 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 2e-07 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 7e-07 | |
| PRK14808 | 335 | PRK14808, PRK14808, histidinol-phosphate aminotran | 8e-07 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 1e-06 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 6e-06 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 1e-05 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 1e-05 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 3e-05 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 2e-04 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 4e-04 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 4e-04 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 7e-04 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 7e-04 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 0.001 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 0.001 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 0.002 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 0.002 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 0.002 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 0.003 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 344 bits (885), Expect = e-119
Identities = 140/181 (77%), Positives = 159/181 (87%)
Query: 52 QQVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
++E ++ +GDSFIR H+ +L PYQPILPFEVLS QLGRKPEDIVK+DANENPYGPPP
Sbjct: 9 TAMSEVKQSTSGDSFIRKHILQLAPYQPILPFEVLSAQLGRKPEDIVKLDANENPYGPPP 68
Query: 112 EVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGD 171
EV EALG +KFPY+YPDPESRRLRAALA+DSGLES++ILVGCGADELIDL+MRCVLDPGD
Sbjct: 69 EVLEALGNMKFPYVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGD 128
Query: 172 KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPD 231
KI+DCPPTF MY FDAAVNGA V+KVPR DFSL+V I +AVE KPK +FLTSPNNPD
Sbjct: 129 KIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPD 188
Query: 232 G 232
G
Sbjct: 189 G 189
|
Length = 380 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 1e-50
Identities = 70/166 (42%), Positives = 107/166 (64%), Gaps = 11/166 (6%)
Query: 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFP-YIY 126
R ++ L PYQP ++++K+++NENP+GPPP+ +EAL + Y
Sbjct: 1 RPDIKNLSPYQPARELGG---------KEVIKLNSNENPFGPPPKAKEALRAEADKLHRY 51
Query: 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
PDP+ L+ ALA G++ + IL+G G+DE+I+L++R L+PGD ++ PPT++MYE
Sbjct: 52 PDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEIS 111
Query: 187 AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A ++GA VVKVP D L++E I A++ +KPK +FL SPNNP G
Sbjct: 112 AKIHGAEVVKVPLDEDGQLDLEDILVAID-DKPKLVFLCSPNNPTG 156
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 2e-48
Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 12/170 (7%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
+R +R L PY P + Q G I+K+ +NENPYGPPP+V EA+ L
Sbjct: 2 LRPLVRDLPPYVP------GARQYG--LPGIIKLSSNENPYGPPPKVIEAIRAALDKLNR 53
Query: 126 YPDPESRRLRAALA-KDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
YPDP+ R LRAALA ++ +++LVG G+DELI+L++R ++PGD ++ PTF+MYE
Sbjct: 54 YPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYE 113
Query: 185 FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
A + GA VVKVP K +F L+++ I A+ R+K K +FL +PNNP G
Sbjct: 114 IAAQLAGAEVVKVPLK-EFRLDLDAILAAI-RDKTKLVFLCNPNNPTGTL 161
|
Length = 356 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 1e-45
Identities = 72/168 (42%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
IR+ ++++KPY P E ++ + G PE I+K+ +NENP GP P+ EA+ + L +
Sbjct: 6 IRAEVKEIKPYVPGKSKEEIAREYGIDPESIIKLGSNENPLGPSPKAVEAIEKELSKIHR 65
Query: 126 YPDPESRRLRAALAKDSGLESDHILV-GCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
YP+P++ LR AL+K +G+ ++I+V G G DE+ID +MR +DPGD+++ PTF+ YE
Sbjct: 66 YPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYE 125
Query: 185 FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A +GA V R+ DFSL+V+ + +A+ EK K IFL +PNNP G
Sbjct: 126 ISAKAHGAKPVYAKREEDFSLDVDSVLNAIT-EKTKVIFLCTPNNPTG 172
|
Length = 361 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 3e-41
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 5/169 (2%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYI 125
++ L +L YQP E + + G E IVK+ +NENPYGP P+V+EA+ L +
Sbjct: 3 MKEQLNQLSAYQPGKSIEEVKREYGL--EKIVKLASNENPYGPSPKVKEAIAAHLDELAL 60
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD + LR +AK G++ + +L G G DE+I +I R +L+PG V PTF+ Y
Sbjct: 61 YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRH 120
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
+A + GA V +VP K D ++E + A++ E+ K +++ +PNNP G +
Sbjct: 121 NAIIEGAEVREVPLK-DGGHDLEAMLKAID-EQTKIVWICNPNNPTGTY 167
|
Length = 359 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 7e-41
Identities = 57/166 (34%), Positives = 93/166 (56%), Gaps = 5/166 (3%)
Query: 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYIY 126
+ + PY P P E L + G DI+K+ +NENP GP P+ EA+ + Y
Sbjct: 7 NPGILDIAPYVPGKPIEELVREYG--IADIIKLASNENPLGPSPKAIEAIRAAADELHRY 64
Query: 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
PD L+AALA+ G++ + I++G G+DE+++L+ R L PGD+++ F +Y
Sbjct: 65 PDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIA 124
Query: 187 AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A GA V+VP K D+ +++ + AV + + +F+ +PNNP G
Sbjct: 125 AQAVGAKPVEVPAK-DYGHDLDAMLAAVT-PRTRLVFIANPNNPTG 168
|
Length = 367 |
| >gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-32
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Query: 94 PEDIVKIDANENPYGPPPEVREALGQ-LKFPYI--YPDPESRRLRAALAKDSGL-ESDHI 149
+VK+DA ENPY P E+R LG+ L + YPDP + L+AAL G+ +
Sbjct: 25 ATGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPDPRAAALKAALRAAMGVPAGADV 84
Query: 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL 209
L+G G+DELI L+ PG ++ P F MY A + G V VP +DF+L++
Sbjct: 85 LLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPA 144
Query: 210 IADAVEREKPKCIFLTSPNNPDG 232
+ A+ +P +FL PNNP G
Sbjct: 145 MLAAIAEHRPALVFLAYPNNPTG 167
|
Length = 356 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 7e-31
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQL-KFP 123
S R+ +R L PY L E + + G I K+ +NENP GP P VR A + +
Sbjct: 8 SLARAEVRPLPPYNAGLTIEEVRARYG--VPRIAKLGSNENPLGPSPAVRRAFADIAELL 65
Query: 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY 183
+YPDP+ R LR A+A +G+ +D I++G G+++LI +I R VL PGD++V P+F ++
Sbjct: 66 RLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLH 125
Query: 184 EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238
E + GA V +V D +++ + AV P+ + ++P+NP G SW +
Sbjct: 126 EDYPTMMGARVERVTVTPDLGFDLDALCAAV-ARAPRMLMFSNPSNPVG--SWLT 177
|
Length = 371 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 6e-30
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 99 KIDANENPYGPPPEVREALGQLKFPY---IYPDPESRRLRAALAKDSGLESDHILVGCGA 155
K+DANE P+ P EV + + ++ IYPDP + +LR LA+ + +I VG G+
Sbjct: 26 KMDANETPFELPEEVIKNIQEIVKSSQVNIYPDPTAEKLREELARYCSVVPTNIFVGNGS 85
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVE 215
DE+I LIM ++ GD ++ P+F MY + + GA + V K D++ +V +E
Sbjct: 86 DEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIE 145
Query: 216 REKPKCIFLTSPNNPDG 232
+ +PK +FL +PNNP G
Sbjct: 146 KYQPKLVFLCNPNNPTG 162
|
Length = 351 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 7e-30
Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 11/147 (7%)
Query: 98 VKIDANENPYGPPPEVREALGQL----KFPYIYPDPESRRLRAALAK------DSGLESD 147
+ + E + PPPEV EAL YPDP LR A+A+ + +
Sbjct: 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE 60
Query: 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207
I+V GA E + L++R +L+PGD+++ PT+ YE A + GA VV VP + +
Sbjct: 61 EIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLL 120
Query: 208 ELIA-DAVEREKPKCIFLTSPNNPDGR 233
+L +A + K K ++L +PNNP G
Sbjct: 121 DLELLEAAKTPKTKLLYLNNPNNPTGA 147
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-28
Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 18/163 (11%)
Query: 79 PILPFEVLSIQLGRKPEDIVKI--DANENPYGPPPEVREALGQL-------KFPYIYPDP 129
I V S + R E +I D NENP+ P E++E + + ++P+I DP
Sbjct: 1 MIRE-LVKSFKPYRVVEGNYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRYPHITSDP 59
Query: 130 ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV 189
LR A+A+ GL++++I VG G+DELI +++ L G IV PPTF MY F A +
Sbjct: 60 ----LREAIAEFYGLDAENIAVGNGSDELISYLVK--LFEGKHIVITPPTFGMYSFYAKL 113
Query: 190 NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
NG V+ VP K DF+++ E IA+ + + +F+ SPNNP G
Sbjct: 114 NGIPVIDVPLKEDFTIDGERIAE--KAKNASAVFICSPNNPTG 154
|
Length = 337 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 9e-25
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
+R L + Y P G+ +K+ +NE P+GP P VR A+ +
Sbjct: 5 LRPDLAGIPAYVP-----------GKTVPGAIKLSSNETPFGPLPSVRAAIARAAAGVNR 53
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD + LRAALA+ G+ +H+ VGCG+ L +++ PGD+++ +F Y
Sbjct: 54 YPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPI 113
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
V GA V+VP D + +++ +A A+ ++ + IF+ +PNNP G
Sbjct: 114 LVQVAGATPVQVPLTPDHTHDLDAMAAAIT-DRTRLIFVCNPNNPTG 159
|
Length = 352 |
| >gnl|CDD|235115 PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 2e-23
Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 33/182 (18%)
Query: 67 IRSHLRKLKPY-QPILPFEVLSIQLGRKPEDI-VKIDANENPYGPPPE--------VREA 116
+R LR PY P QL D+ V+++ NENPY P P V EA
Sbjct: 10 LRDDLRGKSPYGAP---------QL-----DVPVRLNTNENPYPPSPALVADIAEAVAEA 55
Query: 117 LGQLKFPYIYPDPESRRLRAALA----KDSG--LESDHILVGCGADELIDLIMRCVLDPG 170
L YPD ++ LRA LA +G L +++ G++E++ +++ PG
Sbjct: 56 AAGLNR---YPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPG 112
Query: 171 DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNP 230
+ P+++M+ A V+ PR +DF+L+V+ A+ +P +FLTSPNNP
Sbjct: 113 RTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNP 172
Query: 231 DG 232
G
Sbjct: 173 TG 174
|
Length = 368 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 3e-23
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 17/170 (10%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFP 123
R ++R L PYQ + +LG + V ++ANE P + L Q
Sbjct: 6 TDLARENVRALTPYQS-------ARRLGGNGD--VWLNANEYPTAVEFQ----LTQQTLN 52
Query: 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTM 182
YP+ + + + A +G++ + +LV GADE I+L++R +PG D I+ CPPT+ M
Sbjct: 53 R-YPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGM 111
Query: 183 YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
Y A G + VP ++ L++ IAD + + K +++ SPNNP G
Sbjct: 112 YSVSAETIGVEIRTVPTLDNWQLDLPAIADNL--DGVKVVYVCSPNNPTG 159
|
Length = 351 |
| >gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 4e-23
Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 21/165 (12%)
Query: 82 PF---EVLSIQLGRKPEDIVKIDANENPYGPPPEV----REALGQLKFPYIYPDPESRRL 134
PF E L Q GR +I ANE+ +GP P V REA ++ + Y DPE+ L
Sbjct: 18 PFVGPETLERQRGRPFR--ARIGANESGFGPSPSVIAAMREAAAEI---WKYGDPENHDL 72
Query: 135 RAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCP---PTFTMYEFDAAVNG 191
R ALA G+ ++I+VG G D L+ LI+R ++PGD +V PTF + A G
Sbjct: 73 RHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFN---YHVAGFG 129
Query: 192 AAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236
+V VP + D +++ + DA RE ++L +P+NP G SW
Sbjct: 130 GRLVTVPYRDDRE-DLDALLDAARRENAPLVYLANPDNPMG--SW 171
|
Length = 369 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 3e-21
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 11/163 (6%)
Query: 76 PYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPE----VREALGQLKFPYIYPDPES 131
Y+ E ++ +LG P+D+VK+ +NENP+GP P +REA ++ + YP
Sbjct: 11 AYRAGRGIEEVARELGLDPDDLVKLSSNENPHGPSPAAVEAIREAAERV---HSYPKASH 67
Query: 132 RRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNG 191
L AALA + + + + G D +D + R +LDPGD ++ P F Y A +
Sbjct: 68 ADLTAALADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHH 127
Query: 192 AAVVKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
V + P + DF + + DA + E + ++LTSP+NP G
Sbjct: 128 GEVREYPVSKADDFEQTADTVLDAYDGE--RIVYLTSPHNPTG 168
|
Length = 357 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 5e-21
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 18/157 (11%)
Query: 92 RKPEDIVKIDANENPYGPPPEVREALGQL----KFPYIYPDPESRRLRAALA----KDSG 143
+ ED++ + E + P + EA + Y P LR A+A + G
Sbjct: 25 KGKEDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHY-TPSAGIPELREAIAEKYKRRYG 83
Query: 144 LE---SDHILVGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVNGAAVVKVPR 199
L+ + I+V GA E + L +L+PGD+++ P P + YE + G V VP
Sbjct: 84 LDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVL-IPDPGYPSYEAAVKLAGGKPVPVPL 142
Query: 200 K---SDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233
+ F ++E + A+ K K I L SPNNP G
Sbjct: 143 DEEENGFKPDLEDLEAAI-TPKTKAIILNSPNNPTGA 178
|
Length = 393 |
| >gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 2e-20
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 10/139 (7%)
Query: 98 VKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADE 157
V ++ANE+ + P + + + YPDP+ LR+ALA G + +L+G G+DE
Sbjct: 34 VWLNANESAWANPADPDASTRR------YPDPQPPGLRSALAALYGCAPEQLLIGRGSDE 87
Query: 158 LIDLIMRCVLDPG-DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD---FSLNVELIADA 213
IDL++R + PG D ++ PP F MY A + A +V+VP F +V I A
Sbjct: 88 AIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAA 147
Query: 214 VEREKPKCIFLTSPNNPDG 232
K +FL SP+NP G
Sbjct: 148 ALASNAKLVFLCSPSNPAG 166
|
Length = 364 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-20
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 95 EDIVKIDANENPYG--PPPEVREALGQL-------KFPYIYPDPESRRLRAALAKDS-GL 144
D + + +NE P V +A + PE R A S L
Sbjct: 1 TDKINLGSNEYLGDSGTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVL 60
Query: 145 ESDH---ILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK 200
+ D ++ G GA I+ ++ + L+PGD I+ PT+ Y + G VV+ P
Sbjct: 61 KLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLY 120
Query: 201 S--DFSLNVELIADAVER--EKPKCIFLTSPNNPDG 232
S DF L+ + + A++ E K + TSP+NP G
Sbjct: 121 SSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTG 156
|
Length = 357 |
| >gnl|CDD|235440 PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 4e-20
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 28/172 (16%)
Query: 71 LRKLKPYQPILPFEVLSIQLGRKPED--IVKIDANENPYGPPPEVREAL-----GQLKFP 123
+R+L+PY P G +P+ ++K++ NENPY P P+V EA+ L+
Sbjct: 9 VRQLEPYVP-----------GEQPKLAKLIKLNTNENPYPPSPKVLEAIRAALGDDLR-- 55
Query: 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY 183
+YPDP + LR A+A GL+ + + VG G+DE++ + ++ T++ Y
Sbjct: 56 -LYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFY 114
Query: 184 EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKC-IFLTSPNNPDGRF 234
A + G ++P DFS++VE + +P I +PN P G
Sbjct: 115 PVYAGLYGIPYEEIPLDDDFSIDVE------DYLRPNGGIIFPNPNAPTGIA 160
|
Length = 353 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 87.0 bits (215), Expect = 7e-20
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 23/178 (12%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDI---------VKIDANENPYGPPPEVREAL 117
++ L L+PY+P G+ PE + VK+ +NENP+G P V + L
Sbjct: 3 VKDQLSSLQPYKP-----------GKSPEQMKEVYGDHSFVKLASNENPFGCSPRVLDEL 51
Query: 118 GQLKFPY-IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDC 176
+ + +YPD + LR +A ++ + +L G G DE+I +I R VL GD IV
Sbjct: 52 QKSWLDHALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTA 111
Query: 177 PPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
TF Y A + G V +V + +++ I+ V+ K +++ +PNNP G +
Sbjct: 112 GATFPQYRHHAIIEGCEVKEVALNNGV-YDLDEISSVVD-NDTKIVWICNPNNPTGTY 167
|
Length = 366 |
| >gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 4e-19
Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 24/196 (12%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPY 124
F+RS L +LK Y P P + + ++D NE PY PP++++ L L
Sbjct: 3 PFLRSDLAQLKAYHPH-PSGDADDAVIQLD----RLDTNEFPYDLPPDLKQKLAWLYQQG 57
Query: 125 I----YPDPESRRLRAALAK--------DSGLESDHILVGCGADELID--LIMRCVLDPG 170
I YPD L+ A+A+ S + +I VG G+DELI LI C+ G
Sbjct: 58 IESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEG 117
Query: 171 DKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKP---KCIFLTS 226
+V PTF+MY A G VV+V R F +++ A+E+ + + +F+
Sbjct: 118 SILV-AEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVH 176
Query: 227 PNNPDGRFSWTSSWIW 242
PN+P G + W
Sbjct: 177 PNSPTGNPLTAAELEW 192
|
Length = 374 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 1e-16
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 93 KPEDIVKIDANENPYGPPPEVREAL--GQLKFPY-IYPDPES-RRLRAALAKDSGLESDH 148
K ++++ + N N GP EVREA+ + Y YP PE LR + KD GL+ D
Sbjct: 26 KDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDDE 85
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS---DFSL 205
L+ GA E + L+MR L PGD V P + + + A+ GA V++VP S ++ L
Sbjct: 86 ALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKL 145
Query: 206 NVELIADAVEREKPKCIFLTSPNNPDG 232
EL+ + ++ E + I+L P NP G
Sbjct: 146 TPELVKENMD-ENTRLIYLIDPLNPLG 171
|
Length = 380 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-16
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYP 127
R L L PYQ + ++G + + + I+ANE+P+ E + L +L YP
Sbjct: 13 RPELLALTPYQS-------ARRIGGRGD--IWINANESPFNN--EYKLDLARLNR---YP 58
Query: 128 DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTMYEFD 186
+ + L A + +G+ + IL GADE I+L++R +PG D I PT+ MY
Sbjct: 59 ECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAIS 118
Query: 187 AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A V +P +D+ L ++ I + K +F+ +PNNP G
Sbjct: 119 AETFNVGVKALPLTADYQLPLDYIEQL---DGAKLVFICNPNNPTG 161
|
Length = 354 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-16
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 19/147 (12%)
Query: 89 QLGRKPEDIVKIDANENPYGPP-PEVR-EALGQLKFPYIYPDPESRRLRAALAKDSGLES 146
+ G PED + + NP GPP P + A + YPDPE LRAA A GL +
Sbjct: 11 RYGIPPEDWLDLSTGINPLGPPVPPIPLSAWAR------YPDPEYDELRAAAAAYYGLPA 64
Query: 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
+L GA E I L+ R +L PG +V PT++ Y G VV++P +
Sbjct: 65 ASVLPVNGAQEAIYLLPR-LLAPGRVLV-LAPTYSEYARAWRAAGHEVVELP-------D 115
Query: 207 VELIADAVEREKPKCIFLTSPNNPDGR 233
++ + A+E + + +PNNP GR
Sbjct: 116 LDRLPAALEEA--DLLVVCNPNNPTGR 140
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-15
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 94 PEDIVKIDANENPYGPPPEVREALGQL-----KFPYIYPDPESRRLRAALAKDSGLESDH 148
E V ++ANE P GP P R+A + ++ D LR A GL +DH
Sbjct: 42 AEGAVFLNANECPLGPSPAARDAAARSAALSGRYDLELED----DLRTLFAAQEGLPADH 97
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
++ G+ E ++ + P +V PT+ A GA V KVP ++D + +V+
Sbjct: 98 VMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVK 157
Query: 209 --LIADAVEREKPKCIFLTSPNNPDG 232
L AD I++ +PNNP G
Sbjct: 158 AMLAADP----NAGLIYICNPNNPTG 179
|
Length = 370 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-14
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREA----LGQLKFPYIYPDPESRRLRAALAKDSGL 144
+ G I+ AN NP G P +++A L +L YPDP+ LR +A L
Sbjct: 13 EKGLTKNMILDFSANINPLGVPESLKQAITENLDKLVE---YPDPDYLELRKRIASFEQL 69
Query: 145 ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVV--KVPRKSD 202
+ +++++G GA ELI I++ V P K++ PTF YE A + ++ +++
Sbjct: 70 DLENVILGNGATELIFNIVK-VTKP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETN 127
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
F+ N ++ + +E+ +FL +PNNP G+
Sbjct: 128 FAANEIVLEE--IKEEIDLVFLCNPNNPTGQL 157
|
Length = 354 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-14
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYIYPDPESRRLRAALAKDSGLESD 147
LG P+ ++ AN NP G P ++ A+ L YPD E R L ALA+ + +
Sbjct: 14 VLGISPDQLLDFSANINPLGMPVSLKRAIIDNLDCAERYPDVEYRHLHQALARHHQVPAS 73
Query: 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD--FSL 205
IL G G E I ++ L P ++ P F Y G + + + + L
Sbjct: 74 WILAGNGETESIFAVVS-GLKPRRAMI-VTPGFAEYRRALQQVGCEIRRYSLREADGWQL 131
Query: 206 NVELIADAVEREKPKCIFLTSPNNPDG 232
+ I +A+ + C+FL +PNNP G
Sbjct: 132 T-DAILEALTPD-LDCLFLCTPNNPTG 156
|
Length = 356 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 4e-13
Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 25/148 (16%)
Query: 105 NPYGPPPE-VREALGQL-------KFPYI----YPDPESRRLRAALAK------DSGLES 146
NP PPP V+EAL +L Y+ YP+ +R A+A+ + L +
Sbjct: 42 NPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPE-----VREAIAESLNRRFGTPLTA 96
Query: 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSL 205
DHI++ CGA +++ ++ +L+PGD+++ P F Y F +G +V VP F
Sbjct: 97 DHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQP 156
Query: 206 NVELIADAVEREKPKCIFLTSPNNPDGR 233
+++ + A+ K K + + SPNNP G
Sbjct: 157 DLDALEAAIT-PKTKAVIINSPNNPTGV 183
|
Length = 394 |
| >gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-13
Identities = 46/154 (29%), Positives = 64/154 (41%), Gaps = 8/154 (5%)
Query: 94 PEDIVKIDANENPYGPPPEVREALGQLKFPYI--YPDPESRRLRAALAKDSGLESDHILV 151
P+ I+ A+ NP GPP V A+ + YPDP+ R LR ALA+ L + IL
Sbjct: 21 PDAILDFSASINPLGPPESVIAAIQS-ALSALRHYPDPDYRELRLALAQHHQLPPEWILP 79
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIA 211
G GA EL+ R L + P F Y GA V ++P D +
Sbjct: 80 GNGAAELLTWAGR-ELAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLR 138
Query: 212 DAVER--EKPKC-IFLTSPNNPDGRFSWTSSWIW 242
P + L +P+NP G+ W+ I
Sbjct: 139 LQTLPPQLTPNDGLLLNNPHNPTGKL-WSREAIL 171
|
Length = 360 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-11
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP----RKSD 202
D I+V GA + +D+ MR +++PGD+++ P+F Y V A V VP +++
Sbjct: 82 DEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYA--PLVTLAGGVPVPVATTLENE 139
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F + I +A K K I L SPNNP G
Sbjct: 140 FKVQPAQI-EAAITAKTKAILLCSPNNPTG 168
|
Length = 378 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 5e-10
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 134 LRAALAKDSG------LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA 187
LR ALA+ + I V + + L + ++ PGD++V P +
Sbjct: 66 LREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAP 125
Query: 188 AVNGAAVVKVP---RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239
+ GA VV VP ++L+++ + A+ + + +F+ SPNNP G WT+S
Sbjct: 126 KILGARVVCVPLDFGGGGWTLDLDRLLAAIT-PRTRALFINSPNNPTG---WTAS 176
|
Length = 382 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 6e-10
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 30/151 (19%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE I + +D + Y P PE+REA+ A L +D+GL+
Sbjct: 46 PEHIKEAAIEALDDGKTKYTPAAGIPELREAI-----------------AAKLKRDNGLD 88
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD- 202
++V GA + + +LDPGD+++ P + Y + G V VP +
Sbjct: 89 YDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEEN 148
Query: 203 -FSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F L VE + A+ K K + L SP+NP G
Sbjct: 149 GFKLTVEQLEAAIT-PKTKALILNSPSNPTG 178
|
Length = 393 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 6e-10
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKV-PRKSDFSLNV 207
I+V GA E ID+ R +L+PG +++ P + YE + GA V + R + F L
Sbjct: 92 IIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTA 151
Query: 208 ELIADAVEREKPKCIFLTSPNNPDG 232
E + +A+ EK +C+ L P+NP G
Sbjct: 152 EALENAIT-EKTRCVVLPYPSNPTG 175
|
Length = 387 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 9e-10
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 26/142 (18%)
Query: 100 IDANENPYGPP---PEVREALGQL---KFPYIYPDPESRRLRAALAKDSGLESDHILVGC 153
IDAN++ Y E+R+A K+ Y PE + ILV
Sbjct: 56 IDANQSHYTGMAGLLELRQAAADFVKEKYNLDY-APE----------------NEILVTI 98
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKV-PRKSDFSLNVELIAD 212
GA E + + +L+PGDK++ P + YE + GA +V++ ++DF L E++
Sbjct: 99 GATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEK 158
Query: 213 AV--EREKPKCIFLTSPNNPDG 232
A+ + +K K + L P NP G
Sbjct: 159 AILEQGDKLKAVILNYPANPTG 180
|
Length = 391 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 32/137 (23%)
Query: 106 PYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162
YGP PE+REA+ + L A E + I++ GA + +DL+
Sbjct: 127 QYGPTAGLPELREAI-------------AAYLLARRG--ISCEPEQIVITSGAQQALDLL 171
Query: 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVERE 217
+R +LDPGD ++ PT + A+ GA V+ VP + ++ E + +A+ +
Sbjct: 172 LRLLLDPGDTVLVEDPT-----YPGALQALEALGARVIPVPV-DEDGIDPEALEEALAQW 225
Query: 218 KPKCIFLTSPN--NPDG 232
KPK +++T P NP G
Sbjct: 226 KPKAVYVT-PTFQNPTG 241
|
Length = 459 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 6e-08
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 134 LRAALA----KDSGLESD---HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
L +A+A KD+GL D + V G E I + +++PGD+++ P + YE
Sbjct: 96 LNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT 155
Query: 187 AAVNGAAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233
++ GA + V R DF++ + + A K + I + +P+NP G+
Sbjct: 156 LSMAGAKIKTVTLRPPDFAVPEDELKAAFTS-KTRAILINTPHNPTGK 202
|
Length = 413 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-08
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 134 LRAALAK-----DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAA 188
LR A AK +E D IL+ G E I M + DPGD+I+ P + Y A
Sbjct: 71 LREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFAT 130
Query: 189 VNGAAVVKVPRKSD--FSL-NVELIADAVEREKPKCIFLTSPNNPDG 232
G +V V K + F L + E I + K K I +++P NP G
Sbjct: 131 SAGVKIVPVTTKIEEGFHLPSKEEIEKLIT-PKTKAILISNPGNPTG 176
|
Length = 397 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 107 YGPPPEVREALGQLKFPYIYPDPESRRLRAA-------------LAKDSGLE---SDHIL 150
Y PPPE EAL +PE+ + +A L +D+G+E I+
Sbjct: 39 YPPPPEAIEALNNF-----LANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIV 93
Query: 151 VGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELI 210
V G++ + + DPGD+I+ P + +E + G + VP ++ L E I
Sbjct: 94 VTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAI 153
Query: 211 ADAVEREKPKCIFLTSPNNPDG 232
A+ K + I SPNNP G
Sbjct: 154 EQAIT-PKTRAIVTISPNNPTG 174
|
Length = 389 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 34/152 (22%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 92 RKPEDIVKIDANENPYGPPPEVREALGQL---KFPYIYPDPESRRLRAALAK------DS 142
K E+++ + E + P ++EA + + + P+ LR A+A+
Sbjct: 30 SKMENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGV 89
Query: 143 GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-- 200
++ D+++V GA E L +L+ GD+++ P F Y DA + A +++P +
Sbjct: 90 DVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREE 149
Query: 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
++F + + + + + + + + I + PNNP G
Sbjct: 150 NEFQPDPDELLELITK-RTRMIVINYPNNPTG 180
|
Length = 391 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-07
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 20/139 (14%)
Query: 110 PPEVREAL------GQLKFPYIYPDPESRRLRAALAKDS----GLESD---HILVGCGAD 156
PPE+ EA G ++P P P LRAA+A GLE D +LV GA
Sbjct: 39 PPEMLEAAQEAIAGGVNQYP---PGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGAT 95
Query: 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD---FSLNVELIADA 213
E I + +++PGD+++ P + Y A+ GA V VP D F+L+++ + A
Sbjct: 96 EAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAA 155
Query: 214 VEREKPKCIFLTSPNNPDG 232
V + + + + SP+NP G
Sbjct: 156 VT-PRTRALIVNSPHNPTG 173
|
Length = 387 |
| >gnl|CDD|173269 PRK14808, PRK14808, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-07
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 96 DIVKIDANENPYGPPPEVREAL------GQLKFPYIYPDPE-SRRLRAALAKDSGLESDH 148
D + NENP+ P ++ + + L+ Y PD E ++ + L D L ++
Sbjct: 20 DRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYDSPDEELIEKILSYLDTDF-LSKNN 78
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
+ VG GADE+I ++M D+ V PPT++ Y A GA ++VP D +
Sbjct: 79 VSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRI--- 131
Query: 209 LIADAVEREKPKCIFLTSPNNPDG 232
V + +F+ +PNNP G
Sbjct: 132 ---PEVNVGEGDVVFIPNPNNPTG 152
|
Length = 335 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 91 GRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHIL 150
G + E ++ A+ NPY PP + E + K L +K G + I+
Sbjct: 4 GIREEGLIDFSASVNPY-PPEWLDEMFERAK-EISGRYTYYEWLEEEFSKLFG---EPIV 58
Query: 151 VGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL 209
+ G E + LI L D+ V P T+ YE A A ++K +D EL
Sbjct: 59 ITAGITEALYLIGILALR--DRKVIIPRHTYGEYERVARFFAARIIK--GPNDPEKLEEL 114
Query: 210 IADAVEREKPKCIFLTSPNNPDGRF 234
+ E+ +F +PNNPDG+F
Sbjct: 115 V------ERNSVVFFCNPNNPDGKF 133
|
Length = 311 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 26/136 (19%)
Query: 110 PPEVREALGQLK----FPYIYPDPESRRLRAALA-------KDSGLESDHILVGCGADEL 158
PP +R AL +P + PE LR A+ GL+ +L G EL
Sbjct: 36 PPLIRAALAAAADAPGYPQTWGTPE---LREAIVDWLERRRGVPGLDPTAVLPVIGTKEL 92
Query: 159 IDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE 217
+ + + L PGD +V + YE A + GA V ++
Sbjct: 93 VAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAADD-----------PTELDPV 141
Query: 218 KPKCIFLTSPNNPDGR 233
P I+L SP NP GR
Sbjct: 142 GPDLIWLNSPGNPTGR 157
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 128 DPESRR-LRAALAKDSGL--ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
D E + +K+ L + + I+ GA + L ++ +LDPGD+++ P FT Y+
Sbjct: 68 DVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYK 127
Query: 185 FDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+ G + + + F +NV+ + + K K I L SPNNP G
Sbjct: 128 DQIEMVGGKPIILETYEEDGFQINVKKLEALIT-SKTKAIILNSPNNPTG 176
|
Length = 384 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 28/184 (15%)
Query: 71 LRKLKPYQPILPFEVLSIQL-GRKP---EDIVKIDANENPYGPPPEV-----REALGQL- 120
L +L+PY PFE L+ L G P + + + E P P P RE L L
Sbjct: 4 LSRLQPY----PFEKLAALLAGVTPPASKPPIALSIGE-PKHPTPAFVLEALRENLHGLS 58
Query: 121 KFPYIYPDPESRRLRAALAK-----DSGLESD-HILVGCGADELIDLIMRCVLDPGDK-I 173
+P PE R+ A + +G++ + H+L G E + + V++PG +
Sbjct: 59 TYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPL 118
Query: 174 VDCP-PTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE---KPKCIFLTSPNN 229
V P P + +YE A + GA + ++ + DAV + + +F+ SP N
Sbjct: 119 VVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDF--DAVPESVWRRCQLLFVCSPGN 176
Query: 230 PDGR 233
P G
Sbjct: 177 PTGA 180
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIA 211
G+ E I I ++PGD ++ P + +Y G ++P K + F + + I
Sbjct: 99 GSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIP 158
Query: 212 DAVEREKPKCIFLTSPNNPDG 232
+ + + K K +F+ PNNP G
Sbjct: 159 EDIAK-KAKLMFINYPNNPTG 178
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 110 PPEVREALGQLKFPYIYP----DPESRR-LRAALAKD---SGLESDHILVGCGADELIDL 161
PP ++EAL YP PE R + LA+ +GL+ +L G+ EL+
Sbjct: 42 PPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAW 101
Query: 162 IMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPK 220
+ + L PGD +V + YE A + GA VV+ SL + ++P
Sbjct: 102 LPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRAD-----SL------TELGPQRPA 150
Query: 221 CIFLTSPNNPDGR 233
I+L SP+NP GR
Sbjct: 151 LIWLNSPSNPTGR 163
|
Length = 364 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 133 RLRAALAKDSGLESDH-ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNG 191
LRAA+A H ++ G+ E I L++ +L PGD++V P + A G
Sbjct: 55 GLRAAIADRWRGGDAHVVMTTHGSSEAIYLVLTALLRPGDEVVVVDPAYHSLSHLAVATG 114
Query: 192 AAVVKVPRKSDFSLNVELIA-DAVEREKPKCIFLTSPNNPDGR 233
V P + +L A A+ + + + + P+NP G
Sbjct: 115 CEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHNPTGA 157
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIA 211
G+ E I I ++PGD ++ P + +Y+ G +P K + F +++ I
Sbjct: 101 GSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIP 160
Query: 212 DAVEREKPKCIFLTSPNNPDG 232
+ V + K K +F+ PNNP G
Sbjct: 161 EDVAK-KAKLMFINYPNNPTG 180
|
Length = 385 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 110 PPEVREALGQ-LKFP-YIYPDPESRRLRAA---LAK--DSGLESDHILVGCGADELIDLI 162
PP V EAL Q L+ P + Y P A LA+ ++ + I+ G +
Sbjct: 40 PPAVLEALKQRLEHPVFGYTLPPDSLYAAVINWLAQRHGWQIDPEWIVFLPGVVPSLFAA 99
Query: 163 MRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADAVERE 217
+R + PG+ ++ P + F +AV NG +V P K D + ++E + DA+ E
Sbjct: 100 VRALTAPGEGVIVQTPVY--PPFLSAVKSNGRELVLNPLKLDPGRYRFDLEDLEDAI-TE 156
Query: 218 KPKCIFLTSPNNPDGRFSWTSS 239
K + + L SP+NP GR WT
Sbjct: 157 KARLLLLCSPHNPVGRV-WTRE 177
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 7e-04
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 132 RRLRAALAKDSG--------LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY 183
++ R A+A G + + +++ GA + IM C+ DPGD + P + +
Sbjct: 97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAF 156
Query: 184 EFDAA-VNGAAVVKVPRKSDFSLNVELIADAVE---------REKPKCIFLTSPNNPDG 232
+ D G ++ VP S S N +L DA + +K K + LT+P+NP G
Sbjct: 157 DRDLRWRTGVEIIPVPCSS--SDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLG 213
|
Length = 496 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 110 PPEVREALGQ----LKFPYIYPDPESRRLRAALAK------DSGLESDHILVGCGADELI 159
PPE+ EAL + F Y Y E L AA+A ++ + I+ G I
Sbjct: 40 PPEIIEALRERVDHGVFGYPYGSDE---LYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGI 96
Query: 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADAV 214
L +R + PGD +V P + F A+ NG V++ P D + ++ + + A
Sbjct: 97 SLAIRALTKPGDGVVIQTPVY--PPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAF 154
Query: 215 EREKPKCIFLTSPNNPDGRFSWT 237
E+ K L +P+NP GR WT
Sbjct: 155 VDERVKLFILCNPHNPTGR-VWT 176
|
Length = 388 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 92 RKPEDIVKIDANENPYGP-PPEVREALGQL-KFPYIYPDPESR---RLRAALAK------ 140
R+ EDI+ NP GP PP + E L ++ + P + SR RLR A+++
Sbjct: 26 RRGEDIIDFSMG-NPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRY 84
Query: 141 DSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR 199
D ++ + +V G+ E + +M LD GD ++ P++ ++ + A + GA V VP
Sbjct: 85 DVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPL 144
Query: 200 KSDFSLNVELIADAVERE--KPKCIFLTSPNNP 230
EL A+ KPK + L P+NP
Sbjct: 145 VEGVDFFNEL-ERAIRESYPKPKMMILGFPSNP 176
|
Length = 395 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 19/142 (13%)
Query: 106 PYGPPPEVREALGQL-------KFPYIYPDPESRRLRAALAKDSG------LESDHILVG 152
Y PPPE+ AL + + + PE LR A A + + + +
Sbjct: 40 GYPPPPELLRALAEAAADPAAHLYGPVEGLPE---LREAYAAHYSRLYGAAISPEQVHIT 96
Query: 153 CGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSL--NVELI 210
G ++ M + GD+++ P + ++ + G V +P L +
Sbjct: 97 SGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAA 156
Query: 211 ADAVEREKPKCIFLTSPNNPDG 232
+ + + I L +PNNP G
Sbjct: 157 EALI-TPRTRAIALVTPNNPTG 177
|
Length = 386 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADA 213
D L+ L M +PGD I+ P +T YE + GA +P K +DF ++ELI +
Sbjct: 104 DGLVHLPM-VYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEE 162
Query: 214 VEREKPKCIFLTSPNNP 230
+ +K K + L P NP
Sbjct: 163 I-ADKAKMMILNFPGNP 178
|
Length = 399 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREAL------GQLKFPYIYPDPESRR-LRAALAKD 141
+L IV + E + P +++A G+ K+ + P R+ + A L +
Sbjct: 27 ELRAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERR 86
Query: 142 SGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGA--AVVKV 197
+GL + I VG GA + I L + L+ GD+++ P + Y N +V
Sbjct: 87 NGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVAC 146
Query: 198 PRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
P + F L E + A+ + + + L +P+NP G
Sbjct: 147 PEEQGFKLTPEALEAAIT-PRTRWLILNAPSNPTG 180
|
Length = 402 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 105 NPYGPP----PEVREALGQLKFPYIY---PDPESRRLRAALAKDSGLESDHILVGCGADE 157
N Y PP +REA+ K +Y D +S I V GA E
Sbjct: 61 NQY-PPMTGVAALREAIAA-KTARLYGRQYDADSE----------------ITVTAGATE 102
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVELIADAVER 216
+ + ++ PGD+++ P++ Y + G V+V + DF ++ + A A+
Sbjct: 103 ALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAIS- 161
Query: 217 EKPKCIFLTSPNNPDG 232
+ + I L +P+NP G
Sbjct: 162 PRTRLIILNTPHNPSG 177
|
Length = 386 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 249 | |||
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.96 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.96 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.94 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.94 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.93 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.93 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.93 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.93 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PLN02368 | 407 | alanine transaminase | 99.93 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.93 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.93 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.93 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.93 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.93 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.93 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.92 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PLN02187 | 462 | rooty/superroot1 | 99.92 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.92 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.92 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.92 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.92 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.92 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.91 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.91 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.91 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.91 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.91 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.91 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.91 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.91 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.91 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.91 | |
| PLN02656 | 409 | tyrosine transaminase | 99.91 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.91 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.91 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.91 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.9 | |
| PRK07324 | 373 | transaminase; Validated | 99.9 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.9 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.9 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.9 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.9 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.9 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.9 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.9 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.89 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.89 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.89 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.89 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.89 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.89 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.89 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.89 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.88 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.88 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.88 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.88 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.88 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.88 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.88 | |
| PLN02231 | 534 | alanine transaminase | 99.88 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.88 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.88 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.87 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.87 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.87 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.87 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.86 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.86 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.86 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.86 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.86 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.86 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.85 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.85 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.84 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.82 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.8 | |
| PLN02397 | 423 | aspartate transaminase | 99.8 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.8 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.77 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.76 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.75 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.74 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.73 | |
| PLN02721 | 353 | threonine aldolase | 99.72 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.71 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.7 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.7 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.7 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.69 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.69 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.69 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.68 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.68 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.68 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.66 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.65 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.64 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.63 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.63 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.62 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.62 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.61 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.61 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.61 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.6 | |
| PLN02651 | 364 | cysteine desulfurase | 99.6 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.6 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.6 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.59 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.59 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.58 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.58 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.58 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.58 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.56 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.56 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.56 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.55 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.55 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.55 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.55 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.55 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.54 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.54 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.54 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.54 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.54 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.54 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.53 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.53 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.53 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.52 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.52 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.51 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.51 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.5 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.5 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.5 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.49 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.49 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.49 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.48 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.48 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.48 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.48 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.48 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.47 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.47 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.46 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.46 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.46 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.45 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.45 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.45 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.45 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.45 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.44 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.44 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.44 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.44 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.43 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.43 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.43 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.43 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.43 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.42 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.42 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.41 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.41 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.39 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.39 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.38 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.37 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.37 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.36 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.35 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.35 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.34 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.32 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.32 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.31 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.29 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.23 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.23 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.23 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.21 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.2 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.18 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.18 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.17 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.17 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.17 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.17 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.16 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.15 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.15 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.15 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.13 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.13 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.1 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.06 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.05 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.03 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.03 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 98.99 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 98.96 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 98.94 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 98.93 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 98.9 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 98.9 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 98.84 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 98.84 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 98.84 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 98.84 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 98.83 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 98.83 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 98.81 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 98.79 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 98.76 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 98.76 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 98.74 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 98.74 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 98.74 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 98.7 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 98.69 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 98.67 | |
| PLN02263 | 470 | serine decarboxylase | 98.65 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 98.62 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.58 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.57 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 98.54 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 98.53 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 98.52 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 98.48 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 98.44 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 98.38 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 98.36 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.35 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 98.34 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.33 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.3 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 98.24 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.24 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 98.24 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.16 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 98.15 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 98.11 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 98.09 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 98.08 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 98.08 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 98.01 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 98.0 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 97.97 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 97.97 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 97.97 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 97.97 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.96 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 97.91 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 97.89 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 97.88 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 97.87 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 97.87 | |
| PLN02880 | 490 | tyrosine decarboxylase | 97.84 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 97.77 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 97.77 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 97.74 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 97.69 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 97.68 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 97.68 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 97.62 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 97.53 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 97.51 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 97.47 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 97.46 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 97.42 | |
| PLN02452 | 365 | phosphoserine transaminase | 97.39 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 97.37 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 97.31 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.21 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 97.2 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 97.18 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 97.17 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 97.08 | |
| PLN00144 | 382 | acetylornithine transaminase | 97.07 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 97.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 96.94 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 96.92 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 96.92 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 96.88 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 96.81 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 96.69 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 96.65 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 96.65 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 96.61 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 96.41 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 96.41 | |
| PRK07046 | 453 | aminotransferase; Validated | 96.35 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 96.34 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 96.34 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.24 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 96.23 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 96.16 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 95.99 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 95.98 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 95.95 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 95.85 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 95.8 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 95.75 | |
| PRK06105 | 460 | aminotransferase; Provisional | 95.6 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 95.59 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 95.58 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 95.55 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 95.48 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 95.44 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 95.44 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 95.44 | |
| PRK07678 | 451 | aminotransferase; Validated | 95.39 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 95.34 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 95.33 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 95.19 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 95.17 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 95.14 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 95.09 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 94.99 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 94.96 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 94.95 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 94.92 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 94.87 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 94.79 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 94.78 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 94.75 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 94.73 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 94.6 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 94.59 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 94.56 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 94.53 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 94.31 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 94.13 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 93.99 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 93.04 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 92.67 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 92.31 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 91.82 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 91.36 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 91.23 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 91.14 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 90.54 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 90.43 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 89.18 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 88.61 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 88.22 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 86.29 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 85.44 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 82.67 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 81.04 |
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=228.96 Aligned_cols=185 Identities=75% Similarity=1.255 Sum_probs=164.0
Q ss_pred hccCCCChHHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHH
Q 025730 58 QRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAA 137 (249)
Q Consensus 58 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~ 137 (249)
+.......+++..+.++.+|.++..+...++++|....++|+|+.|+|++++|+.+.+++......+.||+++..+||++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~n~~p~~~~~~v~~a~~~~~~~~~Yp~~~~~~lr~~ 94 (380)
T PLN03026 15 KQSTSGDSFIRKHILQLAPYQPILPFEVLSAQLGRKPEDIVKLDANENPYGPPPEVLEALGNMKFPYVYPDPESRRLRAA 94 (380)
T ss_pred cccccHhHHhhHHhhcCCCCCCCCChHHHHHHhCCCccceEEccCCCCCCCCCHHHHHHHHhhHhhccCCCCCHHHHHHH
Confidence 34466778889999999999777778888888887778999999999999999999999876433467998888999999
Q ss_pred HHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC
Q 025730 138 LAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE 217 (249)
Q Consensus 138 la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~ 217 (249)
+++++++++++|++|+|++++|.+++..++++||+|++++|+|..|...++..|++++.++.++++.+|++++++++...
T Consensus 95 ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~ 174 (380)
T PLN03026 95 LAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETH 174 (380)
T ss_pred HHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998777899999999998437
Q ss_pred CceEEEEcCCCCccccCCChHHHHH
Q 025730 218 KPKCIFLTSPNNPDGRFSWTSSWIW 242 (249)
Q Consensus 218 ~~k~i~l~~PnNPTG~~~~~~e~i~ 242 (249)
++++|++||||||||.+++.+++.+
T Consensus 175 ~~~~v~l~~P~NPTG~~~~~~~l~~ 199 (380)
T PLN03026 175 KPKLLFLTSPNNPDGSIISDDDLLK 199 (380)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHH
Confidence 8999999999999999987665543
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=222.18 Aligned_cols=168 Identities=45% Similarity=0.767 Sum_probs=148.5
Q ss_pred HHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcC-CC
Q 025730 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSG-LE 145 (249)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~-~~ 145 (249)
++.+.++.+|.++ +...|. +++++|+.||||+++|+.+.+++.. ....++||++...+|+++++++++ ++
T Consensus 3 ~~~i~~l~~y~~~------~~~~g~--~~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd~~~~~l~~a~a~~~~~~~ 74 (356)
T COG0079 3 RPLVRDLPPYVPG------ARQYGL--PGIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPDPDYRELRAALAEYYGVVD 74 (356)
T ss_pred chhhhhccCCCCc------ccccCC--ccceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhCCCC
Confidence 4566777888653 233333 3789999999999999999999886 555689999999999999999999 88
Q ss_pred CCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEc
Q 025730 146 SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLT 225 (249)
Q Consensus 146 ~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~ 225 (249)
+++|++++|++++|.+++++++.+||+|+++.|+|.+|...++..|++++.++..+ |.+|++.+.++++ .++++||+|
T Consensus 75 ~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~-~~~~lv~i~ 152 (356)
T COG0079 75 PENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE-FRLDLDAILAAIR-DKTKLVFLC 152 (356)
T ss_pred cceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc-cccCHHHHHHhhh-cCCCEEEEe
Confidence 89999999999999999999999999999999999999999999999999999877 9999999999998 489999999
Q ss_pred CCCCccccCCChHHHHHHHh
Q 025730 226 SPNNPDGRFSWTSSWIWGIS 245 (249)
Q Consensus 226 ~PnNPTG~~~~~~e~i~~i~ 245 (249)
|||||||..++.+++.+.+.
T Consensus 153 nPNNPTG~~~~~~~l~~l~~ 172 (356)
T COG0079 153 NPNNPTGTLLPREELRALLE 172 (356)
T ss_pred CCCCCCCCCCCHHHHHHHHH
Confidence 99999999988877765543
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=220.60 Aligned_cols=169 Identities=31% Similarity=0.547 Sum_probs=145.0
Q ss_pred HHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCC
Q 025730 69 SHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESD 147 (249)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~ 147 (249)
..+..+.+|.+...........+ ..++|+|+.|+|++++|+.+++++.+ +.....||+.|..+||++++++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~nen~~~~~~~v~~a~~~~~~~~~~Yp~~g~~~Lr~aia~~~~~~~~ 82 (366)
T PRK01533 5 DQLSSLQPYKPGKSPEQMKEVYG--DHSFVKLASNENPFGCSPRVLDELQKSWLDHALYPDGGATTLRQTIANKLHVKME 82 (366)
T ss_pred hhhhcCCCCCCCCChHHHHHhcC--CCceEEeCCCCCCCCCCHHHHHHHHHHHHhcCcCCCCCHHHHHHHHHHHhCCCcc
Confidence 45566667755544444444433 36789999999999999999999875 3334568988999999999999999999
Q ss_pred CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCC
Q 025730 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSP 227 (249)
Q Consensus 148 ~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~P 227 (249)
+|++|+|++++|.+++++++++||+|++++|+|..|...++..|++++.++.+ ++.+|+++++++++ .++++|+||||
T Consensus 83 ~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~-~~~~~v~i~~P 160 (366)
T PRK01533 83 QVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN-NGVYDLDEISSVVD-NDTKIVWICNP 160 (366)
T ss_pred eEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC-CCCcCHHHHHHHhC-cCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999984 56799999999987 68999999999
Q ss_pred CCccccCCChHHHH
Q 025730 228 NNPDGRFSWTSSWI 241 (249)
Q Consensus 228 nNPTG~~~~~~e~i 241 (249)
|||||.+++.+++.
T Consensus 161 ~NPTG~~~~~~~l~ 174 (366)
T PRK01533 161 NNPTGTYVNDRKLT 174 (366)
T ss_pred CCCCCCCcCHHHHH
Confidence 99999999877653
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=221.48 Aligned_cols=154 Identities=31% Similarity=0.502 Sum_probs=138.0
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCC-CC-CCcChHHHHHHHHHHc----C--CCCCC-EEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPY-IY-PDPESRRLRAALAKDS----G--LESDH-ILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~-~Y-p~~g~~~lr~~la~~~----~--~~~~~-I~vt~Ga~~~l~~~~~ 164 (249)
.++|+|+.|++++++|+.+.+++.. +..+. .| |..|.++||+++++++ | +++++ |++|+|++++|.+++.
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~ 107 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFL 107 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHH
Confidence 6799999999999999999998876 44432 55 7789999999999987 3 55655 9999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC---CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH-
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK---SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW- 240 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~---~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~- 240 (249)
++++|||+|++++|.|..|.......|++++.+++. .+|.+|+++|+++++ +++|+|+||+||||||.+++.+++
T Consensus 108 a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~-~ktk~i~ln~P~NPTGav~~~~~l~ 186 (393)
T COG0436 108 ALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT-PKTKAIILNSPNNPTGAVYSKEELK 186 (393)
T ss_pred HhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC-ccceEEEEeCCCCCcCcCCCHHHHH
Confidence 999999999999999999999999999999999953 489999999999999 599999999999999999999855
Q ss_pred -HHHHhhhhC
Q 025730 241 -IWGISSEHN 249 (249)
Q Consensus 241 -i~~i~~~~~ 249 (249)
+..+|++||
T Consensus 187 ~i~~~a~~~~ 196 (393)
T COG0436 187 AIVELAREHD 196 (393)
T ss_pred HHHHHHHHcC
Confidence 788888875
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=206.56 Aligned_cols=171 Identities=30% Similarity=0.487 Sum_probs=147.4
Q ss_pred HhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCC
Q 025730 70 HLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDH 148 (249)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~ 148 (249)
++....+|.++..+..++..++..+.++|+|+.|+|++++|+.+.+++.+ +.....||+.+..+||+++++++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~lr~~ia~~~~~~~~~ 84 (357)
T PRK14809 5 DLSDHVAYRAGRGIEEVARELGLDPDDLVKLSSNENPHGPSPAAVEAIREAAERVHSYPKASHADLTAALADRWDVSPEQ 84 (357)
T ss_pred hhhcCCCcCCCCCHHHHHHHhCCCccceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHhCCCcce
Confidence 44556666666677788888887777899999999999999999988875 43446798888999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcC
Q 025730 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTS 226 (249)
Q Consensus 149 I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~ 226 (249)
|++|+|++++|.+++++++++||.|++++|+|..|...++..|++++.++.+ +++.+|++++.+... ++|+|++||
T Consensus 85 I~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~--~~k~i~l~~ 162 (357)
T PRK14809 85 VWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD--GERIVYLTS 162 (357)
T ss_pred EEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc--CCcEEEEeC
Confidence 9999999999999999999999999999999999998888899999988863 457788888887653 689999999
Q ss_pred CCCccccCCChHHHHH
Q 025730 227 PNNPDGRFSWTSSWIW 242 (249)
Q Consensus 227 PnNPTG~~~~~~e~i~ 242 (249)
||||||.+++.+++.+
T Consensus 163 p~NPTG~~~s~~~~~~ 178 (357)
T PRK14809 163 PHNPTGSEIPLDEVEA 178 (357)
T ss_pred CCCCCCcCCCHHHHHH
Confidence 9999999998876543
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=203.91 Aligned_cols=162 Identities=30% Similarity=0.424 Sum_probs=138.3
Q ss_pred HHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhc-cC--CCCC-CCcChHHHHHHHHHHc----C---CCCCCEEE
Q 025730 83 FEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQL-KF--PYIY-PDPESRRLRAALAKDS----G---LESDHILV 151 (249)
Q Consensus 83 ~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~-~~--~~~Y-p~~g~~~lr~~la~~~----~---~~~~~I~v 151 (249)
+..++.+++.+.. |+.|.+++++|+.+.+++.+. .. .++| +..|.++|+++|++.+ | ...++|+|
T Consensus 23 ~~~la~e~~~~~~----LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlV 98 (420)
T KOG0257|consen 23 INRLAAEHKVPNP----LGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLV 98 (420)
T ss_pred HHHHHHhcCCCCc----ccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEE
Confidence 3444444444222 999999999999999999873 22 3677 6678888888888765 3 34568999
Q ss_pred eCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--------CCCCCCHHHHHHhhccCCceEEE
Q 025730 152 GCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--------SDFSLNVELIADAVEREKPKCIF 223 (249)
Q Consensus 152 t~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--------~~~~id~e~l~~~i~~~~~k~i~ 223 (249)
|.|+.++|..++++++++||+|++.+|.|..|.....++|++++.|+.. .+|.+|+++++.+++ ++||+|+
T Consensus 99 T~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t-~kTk~Ii 177 (420)
T KOG0257|consen 99 TAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKIT-EKTKAII 177 (420)
T ss_pred ecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhcc-CCccEEE
Confidence 9999999999999999999999999999999999999999999999843 679999999999999 7999999
Q ss_pred EcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 224 LTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 224 l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+|+||||||.+++++++ +++||++||
T Consensus 178 ~ntPhNPtGkvfsReeLe~ia~l~~k~~ 205 (420)
T KOG0257|consen 178 LNTPHNPTGKVFSREELERIAELCKKHG 205 (420)
T ss_pred EeCCCCCcCcccCHHHHHHHHHHHHHCC
Confidence 99999999999999855 899999986
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=215.07 Aligned_cols=181 Identities=23% Similarity=0.336 Sum_probs=149.8
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCC---CCCCCHHHHHHHHh-ccCCCCCCC-cChHHHHHHHHHH
Q 025730 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANEN---PYGPPPEVREALGQ-LKFPYIYPD-PESRRLRAALAKD 141 (249)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~---~~~~p~~v~~al~~-~~~~~~Yp~-~g~~~lr~~la~~ 141 (249)
.++++..+.++ ....+...+.+....+.++|+|+.|++ .+++|+.+.+++.+ +.....|++ .|..+||++|+++
T Consensus 119 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~ 197 (517)
T PRK13355 119 KSHKLDNVLYD-VRGPVVDEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQY 197 (517)
T ss_pred hhHHhhccCcc-HHHHHHHHHHHHHHcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHH
Confidence 56666666644 333444555555555678999999876 46778988888865 444467976 4799999999999
Q ss_pred c------CCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHh
Q 025730 142 S------GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADA 213 (249)
Q Consensus 142 ~------~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~ 213 (249)
+ ++++++|++|+|++++|.+++.+++++||+|++++|+|..|...++..|++++.++.+ .+|.+|+++++++
T Consensus 198 ~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~ 277 (517)
T PRK13355 198 AQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSK 277 (517)
T ss_pred HHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHh
Confidence 8 6789999999999999999999999999999999999999999999999999999854 4588999999999
Q ss_pred hccCCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 214 VEREKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 214 i~~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++ .++|+|++||||||||.+++.+++ +..+|++||
T Consensus 278 ~~-~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~ 314 (517)
T PRK13355 278 IT-SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQ 314 (517)
T ss_pred cC-cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcC
Confidence 97 689999999999999999987754 566788765
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=202.21 Aligned_cols=164 Identities=30% Similarity=0.517 Sum_probs=138.7
Q ss_pred ChHHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHHcC
Q 025730 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSG 143 (249)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~~~ 143 (249)
..+.+..+..+.+|.+.... .....|+|+.|+||+++++.+ .....++||+....+|++++++++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~Nenp~~~~~~~-----~~~~~~~Yp~~~~~~l~~~~a~~~g 71 (351)
T PRK01688 6 TDLARENVRALTPYQSARRL---------GGNGDVWLNANEYPTAVEFQL-----TQQTLNRYPECQPKAVIENYAAYAG 71 (351)
T ss_pred HHHhhHHhhcCCCCCCCCcc---------CCCCceEecCCCCCCCCChhh-----cccccccCCCCChHHHHHHHHHHhC
Confidence 34566778888888543211 123469999999999988754 2223478999888999999999999
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHhcCCC-CeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEE
Q 025730 144 LESDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCI 222 (249)
Q Consensus 144 ~~~~~I~vt~Ga~~~l~~~~~~~~~pG-d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i 222 (249)
+++++|++|+|++++|.+++++++++| |+|++++|+|..|...++..|++++.++.++++.+|++++++++ .++++|
T Consensus 72 ~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~--~~~~lv 149 (351)
T PRK01688 72 VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNL--DGVKVV 149 (351)
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhc--cCCcEE
Confidence 999999999999999999999999997 99999999999999999999999999998778999999999987 379999
Q ss_pred EEcCCCCccccCCChHHHHHH
Q 025730 223 FLTSPNNPDGRFSWTSSWIWG 243 (249)
Q Consensus 223 ~l~~PnNPTG~~~~~~e~i~~ 243 (249)
+|||||||||.+++.+++.+.
T Consensus 150 ~l~nPnNPTG~~~~~~~l~~l 170 (351)
T PRK01688 150 YVCSPNNPTGNLINPQDLRTL 170 (351)
T ss_pred EEeCCCCCCCCCCCHHHHHHH
Confidence 999999999999877765443
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=201.26 Aligned_cols=172 Identities=34% Similarity=0.661 Sum_probs=148.1
Q ss_pred HHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCC
Q 025730 66 FIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGL 144 (249)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~ 144 (249)
.++..+..+.+|.++..+...++.++ ..++|+|+.|+|++++++.+.+++.+ .....+|++....+||+++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~~~~~~~~~~~~~al~~~~~~~~~Y~~~~g~~lr~~ia~~~~~ 86 (371)
T PRK05166 9 LARAEVRPLPPYNAGLTIEEVRARYG--VPRIAKLGSNENPLGPSPAVRRAFADIAELLRLYPDPQGRALREAIAARTGV 86 (371)
T ss_pred hhhHHHhcCCCCCCCCCHHHHHHhcC--CcceEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHhCc
Confidence 34456677777877666666665554 45789999999999999999998876 2334679876446999999999999
Q ss_pred CCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEE
Q 025730 145 ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFL 224 (249)
Q Consensus 145 ~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l 224 (249)
++++|++|+|++++|.+++.+++++||+|+++.|+|..|...++..|++++.++.+.++++|+++++++++ .++|+|++
T Consensus 87 ~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~-~~~~~v~l 165 (371)
T PRK05166 87 PADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVA-RAPRMLMF 165 (371)
T ss_pred CHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhh-cCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999987778999999999987 68899999
Q ss_pred cCCCCccccCCChHHH
Q 025730 225 TSPNNPDGRFSWTSSW 240 (249)
Q Consensus 225 ~~PnNPTG~~~~~~e~ 240 (249)
+|||||||.+++.+++
T Consensus 166 ~~p~NPtG~~~~~~~~ 181 (371)
T PRK05166 166 SNPSNPVGSWLTADQL 181 (371)
T ss_pred eCCCCCCCCCCCHHHH
Confidence 9999999999877655
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=200.62 Aligned_cols=169 Identities=38% Similarity=0.688 Sum_probs=145.6
Q ss_pred HHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCC
Q 025730 69 SHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESD 147 (249)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~ 147 (249)
+++..+.+|.++..+...+.+++. .++|+|+.|++++++++.+.+++.+ +.....||+.+..+||++++++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~~p~~g~~~lr~~ia~~~~~~~~ 82 (359)
T PRK03158 5 EQLNQLSAYQPGKSIEEVKREYGL--EKIVKLASNENPYGPSPKVKEAIAAHLDELALYPDGYAPELRTKVAKHLGVDEE 82 (359)
T ss_pred hhhhccCCCCCCCCHHHHHHhcCC--CceEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHhCCCHH
Confidence 455666777665556566666654 3789999999999999999998876 4333456888899999999999999999
Q ss_pred CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCC
Q 025730 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSP 227 (249)
Q Consensus 148 ~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~P 227 (249)
+|++|+|+++++.+++++++++||+|++++|+|..|...+...|++++.++.+ ++++|++.++++++ .++++++++||
T Consensus 83 ~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~-~~~~~v~i~~p 160 (359)
T PRK03158 83 QLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-DGGHDLEAMLKAID-EQTKIVWICNP 160 (359)
T ss_pred HEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-CCCcCHHHHHHhcC-CCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999986 67899999999887 68999999999
Q ss_pred CCccccCCChHHHH
Q 025730 228 NNPDGRFSWTSSWI 241 (249)
Q Consensus 228 nNPTG~~~~~~e~i 241 (249)
|||||.+++.+++.
T Consensus 161 ~NPtG~~~~~~~l~ 174 (359)
T PRK03158 161 NNPTGTYVNHEELL 174 (359)
T ss_pred CCCCCCCCCHHHHH
Confidence 99999998776543
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=203.06 Aligned_cols=159 Identities=22% Similarity=0.350 Sum_probs=136.5
Q ss_pred hCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCCCcChHHHHHHHHHHcC------CCC-CCEEEeCCHHHHH
Q 025730 90 LGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF--PYIYPDPESRRLRAALAKDSG------LES-DHILVGCGADELI 159 (249)
Q Consensus 90 ~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp~~g~~~lr~~la~~~~------~~~-~~I~vt~Ga~~~l 159 (249)
......++|+|+.|++++++++.+.+++.+ +.. .+.|+..|..+||++++++++ +++ ++|++|+|++++|
T Consensus 27 ~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al 106 (399)
T PRK07681 27 KIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGL 106 (399)
T ss_pred hhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHH
Confidence 333456789999999999999999988876 322 245666789999999999973 677 7999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
.+++.+++++||+|++++|+|..|...++..|++++.++.++ +|.+|++++++++. .++|+|++||||||||.+++.
T Consensus 107 ~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~v~l~~P~NPTG~~~s~ 185 (399)
T PRK07681 107 VHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIA-DKAKMMILNFPGNPVPAMAHE 185 (399)
T ss_pred HHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc-ccceEEEEeCCCCCcCcCCCH
Confidence 999999999999999999999999999999999999999653 46789999999886 689999999999999999988
Q ss_pred HHH--HHHHhhhhC
Q 025730 238 SSW--IWGISSEHN 249 (249)
Q Consensus 238 ~e~--i~~i~~~~~ 249 (249)
+++ +.++|++||
T Consensus 186 ~~~~~i~~~a~~~~ 199 (399)
T PRK07681 186 DFFKEVIAFAKKHN 199 (399)
T ss_pred HHHHHHHHHHHHcC
Confidence 755 566788765
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=199.93 Aligned_cols=147 Identities=37% Similarity=0.646 Sum_probs=133.1
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCCCcChHHHHHHHHHHcCCCC-CCEEEeCCHHHHHHHHHHHhcCCC
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF--PYIYPDPESRRLRAALAKDSGLES-DHILVGCGADELIDLIMRCVLDPG 170 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp~~g~~~lr~~la~~~~~~~-~~I~vt~Ga~~~l~~~~~~~~~pG 170 (249)
.++|+|+.|+|++++|+.+++++.+ +.. ..+||+.+..+||++++++++++. ++|++|+|++++|.+++++++++|
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~g 105 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPG 105 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCC
Confidence 5789999999999999999999986 432 367988888999999999999865 489999999999999999999999
Q ss_pred CeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHH
Q 025730 171 DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWI 241 (249)
Q Consensus 171 d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i 241 (249)
|+|++++|+|..|...++..|++++.++.++++++|++++++++++.++|+|++||||||||.+++.+++.
T Consensus 106 d~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~ 176 (356)
T PRK04870 106 ATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVE 176 (356)
T ss_pred CEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999998778899999999999756899999999999999998776553
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=202.74 Aligned_cols=156 Identities=23% Similarity=0.350 Sum_probs=135.6
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-cChHHHHHHHHHHc----C---CCCC-CEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-PESRRLRAALAKDS----G---LESD-HILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-~g~~~lr~~la~~~----~---~~~~-~I~vt~Ga~~~l~~~ 162 (249)
.+.++|+|+.|++++++++.+.+++.+ +.....|++ .|..+||+++++++ | ++++ +|++|+|++++|.++
T Consensus 27 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~ 106 (396)
T PRK09147 27 ADLPPISLSIGEPKHPTPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAF 106 (396)
T ss_pred cCCCeEecCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHH
Confidence 356889999999999999999999876 444477975 47899999999986 6 5564 899999999999999
Q ss_pred HHHhcCC---CCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 163 MRCVLDP---GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 163 ~~~~~~p---Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
++++++| ||.|++++|+|..|...++..|++++.||.+ ++|.+|++++++.+. .++|++++||||||||.+++.
T Consensus 107 ~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~-~~~k~i~l~nP~NPTG~~~s~ 185 (396)
T PRK09147 107 AQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVW-ARTQLLFVCSPGNPTGAVLPL 185 (396)
T ss_pred HHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHh-hccEEEEEcCCCCCcCccCCH
Confidence 9999999 8999999999999999999999999999964 347899999998886 589999999999999999998
Q ss_pred HHH--HHHHhhhhC
Q 025730 238 SSW--IWGISSEHN 249 (249)
Q Consensus 238 ~e~--i~~i~~~~~ 249 (249)
+++ +.++|++||
T Consensus 186 ~~~~~l~~~a~~~~ 199 (396)
T PRK09147 186 DDWKKLFALSDRYG 199 (396)
T ss_pred HHHHHHHHHHHHcC
Confidence 855 566787765
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=202.03 Aligned_cols=147 Identities=29% Similarity=0.463 Sum_probs=132.2
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCe
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK 172 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~ 172 (249)
.++.++|+.|+|++++|+.+.+++.+ .....+||+.+..+||+++++++|+++++|++|+|++++|.+++.+++++||+
T Consensus 42 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~ 121 (370)
T PRK09105 42 AEGAVFLNANECPLGPSPAARDAAARSAALSGRYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAG 121 (370)
T ss_pred CCCcEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCE
Confidence 46789999999999999999999875 33335788777899999999999999999999999999999999999999999
Q ss_pred EEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHH
Q 025730 173 IVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIW 242 (249)
Q Consensus 173 Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~ 242 (249)
|++++|+|..|...++..|++++.++.+.++.+|++++++. . .++++|++||||||||.+++.+++.+
T Consensus 122 Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~-~~~~~v~l~nP~NPTG~~~~~~~l~~ 189 (370)
T PRK09105 122 LVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAA-D-PNAGLIYICNPNNPTGTVTPRADIEW 189 (370)
T ss_pred EEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHhc-C-CCCCEEEEeCCCCCCCcCcCHHHHHH
Confidence 99999999999999999999999999877888999999887 3 57899999999999999988776643
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-25 Score=197.04 Aligned_cols=182 Identities=41% Similarity=0.700 Sum_probs=155.9
Q ss_pred HHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCC
Q 025730 66 FIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGL 144 (249)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~ 144 (249)
.+..++..+.+|.+.......+.++|.++.++|+|+.|+|++++++.+.+++.+ ......||++...+||+++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~lr~~ia~~~~~ 84 (361)
T PRK00950 5 KIRAEVKEIKPYVPGKSKEEIAREYGIDPESIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPEPDAPELREALSKYTGV 84 (361)
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHhCCCccceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCC
Confidence 345677777888766667777888887777899999999999999999888875 3334678877779999999999999
Q ss_pred CCCCEEE-eCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEE
Q 025730 145 ESDHILV-GCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIF 223 (249)
Q Consensus 145 ~~~~I~v-t~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~ 223 (249)
++++|++ |+|+++++.++++.++++||+|++++|+|..|...++..|++++.++.++++.+|++++++.++ .++++|+
T Consensus 85 ~~~~i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~ 163 (361)
T PRK00950 85 PVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAIT-EKTKVIF 163 (361)
T ss_pred CHHHEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhc-cCCCEEE
Confidence 9999999 8999999999999999999999999999999998889999999999977778999999999987 6899999
Q ss_pred EcCCCCccccCCChHHHHHHHhhhhC
Q 025730 224 LTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 224 l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++|||||||.+++.++ +.++|+++|
T Consensus 164 ~~~p~nptG~~~~~~~-l~~l~~~~~ 188 (361)
T PRK00950 164 LCTPNNPTGNLIPEED-IRKILESTD 188 (361)
T ss_pred EeCCCCCCCCCcCHHH-HHHHHHHCC
Confidence 9999999999976654 555666653
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-25 Score=199.93 Aligned_cols=156 Identities=20% Similarity=0.273 Sum_probs=134.6
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCC-cChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPD-PESRRLRAALAKDS----G--LESD-HILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~-~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~ 161 (249)
.+.++|+|+.|++++++++.+.+++.+ +. ....|++ .|..+||+++++++ | ++++ +|++|+|++++|.+
T Consensus 28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~ 107 (388)
T PRK07366 28 AGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAH 107 (388)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHH
Confidence 456789999999999999999998876 32 2356854 68999999999997 4 6787 69999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
++++++++||+|++++|+|..|...++..|++++.++.+. ++.+|++++++.+. .++|+|++||||||||.+++.++
T Consensus 108 ~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~~p~NPTG~~~s~~~ 186 (388)
T PRK07366 108 LPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVL-AQARLMVLSYPHNPTTAIAPLSF 186 (388)
T ss_pred HHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhc-ccceEEEEeCCCCCCCccCCHHH
Confidence 9999999999999999999999999999999999999753 46789999988876 57999999999999999999886
Q ss_pred H--HHHHhhhhC
Q 025730 240 W--IWGISSEHN 249 (249)
Q Consensus 240 ~--i~~i~~~~~ 249 (249)
+ +..+|++||
T Consensus 187 ~~~l~~~a~~~~ 198 (388)
T PRK07366 187 FQEAVAFCQQHD 198 (388)
T ss_pred HHHHHHHHHHcC
Confidence 5 556787764
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-25 Score=198.62 Aligned_cols=150 Identities=29% Similarity=0.494 Sum_probs=132.8
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-cc----CCCCCCCcChHHHHHHHHHHc------CCCCCCEEEeCCHHHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LK----FPYIYPDPESRRLRAALAKDS------GLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~----~~~~Yp~~g~~~lr~~la~~~------~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
..|+|+.|+|++++|+.+.+++.+ +. ...+||+.+..+||+++++++ ++++++|++|+|++++|.++++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~ 106 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQ 106 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHH
Confidence 469999999999999999999875 22 236899888899999999998 5788999999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHH
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGI 244 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i 244 (249)
+++++||.|+++.|+|..|...++..|.+++.++.++++++|++++++++++.++|+|+++|||||||.+++.+++ .+|
T Consensus 107 ~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l-~~l 185 (368)
T PRK03317 107 AFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDV-EAI 185 (368)
T ss_pred HhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHH-HHH
Confidence 9999999999999999999999999999999998777889999999999975688999999999999999876654 344
Q ss_pred hh
Q 025730 245 SS 246 (249)
Q Consensus 245 ~~ 246 (249)
++
T Consensus 186 ~~ 187 (368)
T PRK03317 186 LD 187 (368)
T ss_pred HH
Confidence 43
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=203.58 Aligned_cols=182 Identities=16% Similarity=0.243 Sum_probs=145.7
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCC--------C----------------------CCCHHHHHH
Q 025730 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENP--------Y----------------------GPPPEVREA 116 (249)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~--------~----------------------~~p~~v~~a 116 (249)
+++++..+.++ ....+...+.+....+.++|+|++|+|+ | .+++.+.++
T Consensus 11 ~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a 89 (407)
T PLN02368 11 LNENVKKCQYA-VRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARA 89 (407)
T ss_pred cCHHHHhhhhh-cCCHHHHHHHHHHHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHH
Confidence 44556655554 3455667777665556789999999986 3 255566666
Q ss_pred HHhc---c-CCCCCCC-cChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHHHHHHhc-CCCCeEEEcCCCChhHH
Q 025730 117 LGQL---K-FPYIYPD-PESRRLRAALAKDS----G--LESDHILVGCGADELIDLIMRCVL-DPGDKIVDCPPTFTMYE 184 (249)
Q Consensus 117 l~~~---~-~~~~Yp~-~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~~~~~~~-~pGd~Vlv~~P~y~~~~ 184 (249)
+..+ . ....|++ .|.++||+++++++ | +++++|++|+|++++|.+++.+++ +|||+|++++|+|..|.
T Consensus 90 ~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~ 169 (407)
T PLN02368 90 KHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYS 169 (407)
T ss_pred HHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHH
Confidence 6543 1 2357965 57899999999997 5 578999999999999999999987 79999999999999999
Q ss_pred HHHHHCCCEEEEecCC--CCCCCCHHHHHHhhcc-----CCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 185 FDAAVNGAAVVKVPRK--SDFSLNVELIADAVER-----EKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 185 ~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~-----~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
..++..|++++.++.+ ++|++|++.+++++++ .++|++++||||||||.+++.+++ +..+|++||
T Consensus 170 ~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~ 243 (407)
T PLN02368 170 ATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQER 243 (407)
T ss_pred HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 9999999999999964 3589999999999862 168999999999999999998865 566788765
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=196.08 Aligned_cols=166 Identities=27% Similarity=0.380 Sum_probs=138.4
Q ss_pred CCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHH
Q 025730 79 PILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADE 157 (249)
Q Consensus 79 ~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~ 157 (249)
++..+...+...|....++|+|+.|+|++++|+.+.+++.+ +....+||+++..+||+++|+++++++++|++|+|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~a~~~~~~~~~~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~ 85 (360)
T PRK07392 6 HGGNLAWAAAIAGCPPDAILDFSASINPLGPPESVIAAIQSALSALRHYPDPDYRELRLALAQHHQLPPEWILPGNGAAE 85 (360)
T ss_pred CCccHHHHHHHcCCCcccEEEeCCcCCCCCCCHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHhCcChhhEEECCCHHH
Confidence 44555555667777777899999999999999999999875 43456798777789999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCC-----CCHHHHHHhhccCCceEEEEcCCCCccc
Q 025730 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFS-----LNVELIADAVEREKPKCIFLTSPNNPDG 232 (249)
Q Consensus 158 ~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~-----id~e~l~~~i~~~~~k~i~l~~PnNPTG 232 (249)
+|.++++++. +||.|++++|+|..|...++..|++++.++.+.++. .+++++++.. .+++++++||||||||
T Consensus 86 ~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~nP~NPTG 162 (360)
T PRK07392 86 LLTWAGRELA-QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL--TPNDGLLLNNPHNPTG 162 (360)
T ss_pred HHHHHHHHhC-CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc--cCCCEEEEeCCCCCCC
Confidence 9999999864 789999999999999999999999999999754433 4677776654 4689999999999999
Q ss_pred cCCChHHHHHHHhhhh
Q 025730 233 RFSWTSSWIWGISSEH 248 (249)
Q Consensus 233 ~~~~~~e~i~~i~~~~ 248 (249)
.+++.+++ ..+++++
T Consensus 163 ~~~~~~~l-~~l~~~~ 177 (360)
T PRK07392 163 KLWSREAI-LPLLEQF 177 (360)
T ss_pred CCcCHHHH-HHHHHHC
Confidence 99986654 5556655
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=196.64 Aligned_cols=167 Identities=26% Similarity=0.404 Sum_probs=140.7
Q ss_pred CCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHH
Q 025730 79 PILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADE 157 (249)
Q Consensus 79 ~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~ 157 (249)
+++.+...+.+++.+..++++|+.|+|++++|+.+++++.+ +....+||+.+..+||+++|+++++++++|++|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~p~~~~~a~~~~~~~~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~ 83 (356)
T PRK08056 4 HGGNIREAATVLGISPDQLLDFSANINPLGMPVSLKRAIIDNLDCAERYPDVEYRHLHQALARHHQVPASWILAGNGETE 83 (356)
T ss_pred CCccHHHHHHHhCCChhhEEEeccccCCCCCCHHHHHHHHHHHHhcccCcCccHHHHHHHHHHHhCcChhhEEECCCHHH
Confidence 56667778888888778899999999999999999999876 33346798878899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 158 ~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
++.++++.+ .+|| +++++|+|..|...++..|++++.++.+. ++.+| +++++.+. +++|+|+++|||||||.++
T Consensus 84 ~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~-~~~k~v~l~~p~NPTG~~~ 159 (356)
T PRK08056 84 SIFAVVSGL-KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALT-PDLDCLFLCTPNNPTGLLP 159 (356)
T ss_pred HHHHHHHHh-CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc-CCCCEEEEeCCcCCCCCCC
Confidence 999999876 6776 77789999999999999999999999643 45566 45666666 7899999999999999998
Q ss_pred ChHHH--HHHHhhhhC
Q 025730 236 WTSSW--IWGISSEHN 249 (249)
Q Consensus 236 ~~~e~--i~~i~~~~~ 249 (249)
+.+++ +.++|+++|
T Consensus 160 ~~~~~~~i~~~a~~~~ 175 (356)
T PRK08056 160 ERQLLQAIAERCKSLN 175 (356)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 87654 566777764
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-25 Score=198.42 Aligned_cols=170 Identities=29% Similarity=0.481 Sum_probs=139.2
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC---CCCCCCcChHHHHHHHHHHc
Q 025730 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF---PYIYPDPESRRLRAALAKDS 142 (249)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~---~~~Yp~~g~~~lr~~la~~~ 142 (249)
.+..+..+.+|.+..... .. .+ ...+++|+.|+|++++|+.+.+++.+ +.. ..+||+.|..+||+++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~-~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~ 79 (374)
T PRK02610 5 LRSDLAQLKAYHPHPSGD--AD-DA--VIQLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYV 79 (374)
T ss_pred hHHHHhhcCCCCCCCchh--hh-hc--ccceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHh
Confidence 345566667764332110 00 01 13579999999999999999999875 332 25798888999999999998
Q ss_pred C--------CCCCCEEEeCCHHHHHHHHHHHhcCCCC-eEEEcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHH
Q 025730 143 G--------LESDHILVGCGADELIDLIMRCVLDPGD-KIVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIAD 212 (249)
Q Consensus 143 ~--------~~~~~I~vt~Ga~~~l~~~~~~~~~pGd-~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~ 212 (249)
+ +++++|++|+|++++|..++.+++.+|| +|++++|+|..|...++..|++++.++.++ ++++|++++++
T Consensus 80 ~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~ 159 (374)
T PRK02610 80 NESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQS 159 (374)
T ss_pred CccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHH
Confidence 6 7889999999999999988888888886 899999999999999999999999999754 58999999999
Q ss_pred hhcc---CCceEEEEcCCCCccccCCChHHHH
Q 025730 213 AVER---EKPKCIFLTSPNNPDGRFSWTSSWI 241 (249)
Q Consensus 213 ~i~~---~~~k~i~l~~PnNPTG~~~~~~e~i 241 (249)
++++ .++|+|++||||||||.+++.+++.
T Consensus 160 ~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~ 191 (374)
T PRK02610 160 AIEQTQNPPVRVVFVVHPNSPTGNPLTAAELE 191 (374)
T ss_pred HHHhhcCCCceEEEEeCCCCCCCCCCCHHHHH
Confidence 9874 5899999999999999999888653
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=198.92 Aligned_cols=156 Identities=21% Similarity=0.376 Sum_probs=135.3
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCCcChHHHHHHHHHHc----C---CCCC-CEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPDPESRRLRAALAKDS----G---LESD-HILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~~g~~~lr~~la~~~----~---~~~~-~I~vt~Ga~~~l~~ 161 (249)
++.++|+|+.|++++.+++.+.+++.+ +. ....||+.|..+||+++++++ | ++++ +|++|+|++++|.+
T Consensus 42 ~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~ 121 (410)
T PRK06290 42 PDMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAM 121 (410)
T ss_pred CCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHH
Confidence 355789999999999999988888765 32 235688788999999999996 4 5576 79999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
++++++++||.|++++|+|..|...++..|++++.++.++ ++.+|++++++.+. .++|+|++||||||||.+++.++
T Consensus 122 ~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~nP~NPTG~v~s~e~ 200 (410)
T PRK06290 122 LPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIK-EKAKLLYLNYPNNPTGAVATKEF 200 (410)
T ss_pred HHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhc-ccceEEEEECCCCCCCcCCCHHH
Confidence 9999999999999999999999999999999999999753 47789999999887 68999999999999999998875
Q ss_pred H--HHHHhhhhC
Q 025730 240 W--IWGISSEHN 249 (249)
Q Consensus 240 ~--i~~i~~~~~ 249 (249)
+ +.++|++||
T Consensus 201 l~~l~~la~~~~ 212 (410)
T PRK06290 201 YEEVVDFAKENN 212 (410)
T ss_pred HHHHHHHHHHcC
Confidence 4 556788765
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=193.48 Aligned_cols=170 Identities=32% Similarity=0.565 Sum_probs=143.0
Q ss_pred HHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCCcChHHHHHHHHHHc
Q 025730 66 FIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPDPESRRLRAALAKDS 142 (249)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~~g~~~lr~~la~~~ 142 (249)
+.+..+..+.+|... .....++|+.|++++++|+.+.+++.+ +. ...+|++.+..+||+++|+++
T Consensus 5 ~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~~~~~~~lr~~ia~~~ 72 (351)
T PRK14807 5 LVREEIKGFKNYEVH------------SIPYKYKMDANETPFELPEEVIKNIQEIVKSSQVNIYPDPTAEKLREELARYC 72 (351)
T ss_pred HHHHHHhhcCCCCCC------------CCCceeEccCCCCCCCCCHHHHHHHHHHhhcCcccCCCCccHHHHHHHHHHHh
Confidence 445666666666211 113458999999999999999999876 32 336788777889999999999
Q ss_pred CCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEE
Q 025730 143 GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCI 222 (249)
Q Consensus 143 ~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i 222 (249)
++++++|++|+|++++|.+++.+++++||+|++++|+|..|...++..|++++.++.++++++|++++++++++.++|+|
T Consensus 73 ~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v 152 (351)
T PRK14807 73 SVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLV 152 (351)
T ss_pred CCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999877789999999999975589999
Q ss_pred EEcCCCCccccCCChHHHHHHHhhhh
Q 025730 223 FLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 223 ~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
+++|||||||.+++.+++ .++++++
T Consensus 153 ~l~~p~NPtG~~~~~~~l-~~l~~~~ 177 (351)
T PRK14807 153 FLCNPNNPTGSVIEREDI-IKIIEKS 177 (351)
T ss_pred EEeCCCCCCCCCCCHHHH-HHHHHhC
Confidence 999999999999876554 4445443
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=194.57 Aligned_cols=143 Identities=29% Similarity=0.491 Sum_probs=127.7
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCe
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK 172 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~ 172 (249)
+++|+|+.|++++++++.+.+++.+ +. ....||+.+..+||+++|+++++++++|++|+|++++|.+++++++++||+
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~ 103 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRP 103 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCE
Confidence 5689999999999999999999876 32 246788878899999999999999999999999999999999999999999
Q ss_pred EEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHH
Q 025730 173 IVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIW 242 (249)
Q Consensus 173 Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~ 242 (249)
|++++|+|..|...++..|++++.++.++++++|++++++ ++++|+++|||||||.+++.+++.+
T Consensus 104 vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~-----~~~~v~~~~P~NPtG~~~~~~~~~~ 168 (353)
T PRK05387 104 LLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR-----PNGGIIFPNPNAPTGIALPLAEIER 168 (353)
T ss_pred EEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHh-----cCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 9999999999999999999999999987788999999864 3578999999999999987665543
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=197.51 Aligned_cols=163 Identities=18% Similarity=0.217 Sum_probs=137.8
Q ss_pred HHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCC-CCcChHHHHHHHHHHcC------CCCCCEEEeCCHH
Q 025730 86 LSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LK-FPYIY-PDPESRRLRAALAKDSG------LESDHILVGCGAD 156 (249)
Q Consensus 86 ~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Y-p~~g~~~lr~~la~~~~------~~~~~I~vt~Ga~ 156 (249)
..+......+++++|+.|++++++|+.+.+++.+ +. ....| +..|.++||++++++++ +++++|++|+|++
T Consensus 23 ~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 102 (387)
T PRK08960 23 RANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGS 102 (387)
T ss_pred HHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcH
Confidence 3333333456789999999999999999999876 33 22567 56789999999999973 6889999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 157 ~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
++|.+++..++++||+|++++|+|..+...+...|.+++.++.+. ++.+|++++++.++ .++++++++|||||||.+
T Consensus 103 ~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~ 181 (387)
T PRK08960 103 GALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWN-ADTVGALVASPANPTGTL 181 (387)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhC-ccceEEEEECCCCCCCcC
Confidence 999999999999999999999999999999999999999998643 46899999999887 678999999999999999
Q ss_pred CChHHH--HHHHhhhhC
Q 025730 235 SWTSSW--IWGISSEHN 249 (249)
Q Consensus 235 ~~~~e~--i~~i~~~~~ 249 (249)
++.+++ +.++|++||
T Consensus 182 ~~~~~~~~l~~~~~~~~ 198 (387)
T PRK08960 182 LSRDELAALSQALRARG 198 (387)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 988755 556788775
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=194.66 Aligned_cols=176 Identities=31% Similarity=0.567 Sum_probs=149.1
Q ss_pred HHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCC
Q 025730 66 FIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGL 144 (249)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~ 144 (249)
+.++++.++.+|.++..+...+++. +..++++|+.|++++++++.+.+++.+ .....+||+....+||+++|+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~lr~~ia~~~~~ 82 (367)
T PRK02731 5 LPNPGILDIAPYVPGKPIEELVREY--GIADIIKLASNENPLGPSPKAIEAIRAAADELHRYPDGSGFELKAALAEKFGV 82 (367)
T ss_pred cchhhhcccCCcCCCCCHHHHHHhc--CCCceEEecCCCCCCCCCHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhCc
Confidence 3456677777786666666666655 456799999999999999999888876 3334678877678999999999999
Q ss_pred CCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEE
Q 025730 145 ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFL 224 (249)
Q Consensus 145 ~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l 224 (249)
++++|++|+|+++++.+++.+++++||+|++++|+|..|...++..|++++.++. +++.+|++.++++++ .++++|++
T Consensus 83 ~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~v~l 160 (367)
T PRK02731 83 DPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA-KDYGHDLDAMLAAVT-PRTRLVFI 160 (367)
T ss_pred CHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc-cCCCCCHHHHHHHhC-CCCcEEEE
Confidence 9999999999999999999999999999999999999999888899999999998 568899999999997 68999999
Q ss_pred cCCCCccccCCChHHHHHHHhh
Q 025730 225 TSPNNPDGRFSWTSSWIWGISS 246 (249)
Q Consensus 225 ~~PnNPTG~~~~~~e~i~~i~~ 246 (249)
+|||||||.+++.+++ .++++
T Consensus 161 ~~p~nptG~~~~~~~l-~~l~~ 181 (367)
T PRK02731 161 ANPNNPTGTYLPAEEV-ERFLA 181 (367)
T ss_pred eCCCCCCCcCCCHHHH-HHHHH
Confidence 9999999999876654 34443
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=195.94 Aligned_cols=179 Identities=21% Similarity=0.367 Sum_probs=143.1
Q ss_pred HHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCC-cChHHHHHHHHHHc--
Q 025730 69 SHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPD-PESRRLRAALAKDS-- 142 (249)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~-~g~~~lr~~la~~~-- 142 (249)
+++..+.++.. ..+...+.+.+....++++|+.|++++++++.+.+++.+ +. ....|++ .|.++||+++++++
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~ 84 (385)
T PRK09276 6 DRIKNLPPYLF-AEIDKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKR 84 (385)
T ss_pred hHhhhCCccHH-HHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 34444444421 223334444545566789999999999999999888876 32 2367875 47899999999997
Q ss_pred --C--CCCC-CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhc
Q 025730 143 --G--LESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVE 215 (249)
Q Consensus 143 --~--~~~~-~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~ 215 (249)
| ++++ +|++|+|++++|.+++..++++||+|++++|+|..|...++..|++++.++.+. ++.+|++++++.+.
T Consensus 85 ~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~ 164 (385)
T PRK09276 85 RFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA 164 (385)
T ss_pred HhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc
Confidence 4 4566 599999999999999999999999999999999999999999999999999643 47789999999887
Q ss_pred cCCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 216 REKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 216 ~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
.++++|+++|||||||.+++.+++ +.++|++||
T Consensus 165 -~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~ 199 (385)
T PRK09276 165 -KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYD 199 (385)
T ss_pred -ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 689999999999999999988744 566777764
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=197.46 Aligned_cols=155 Identities=23% Similarity=0.350 Sum_probs=134.4
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-cChHHHHHHHHHHc--------CCCCC-CEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-PESRRLRAALAKDS--------GLESD-HILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-~g~~~lr~~la~~~--------~~~~~-~I~vt~Ga~~~l~~~ 162 (249)
+.+.|+|+.|++++++|+.+.+++.. +.....|++ .|.++||+++|+++ +++++ +|++|+|++++|.++
T Consensus 27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~ 106 (393)
T TIGR03538 27 SKPPIALSIGEPKHPTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAF 106 (393)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHH
Confidence 46789999999999999999999886 444477965 57899999999998 36675 799999999999999
Q ss_pred HHHhcCCCCe--EEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 163 MRCVLDPGDK--IVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 163 ~~~~~~pGd~--Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
++++++|||. |++++|+|..|...++..|++++.++.+ +++.+|++++++++. .++|+|+++|||||||.+++.+
T Consensus 107 ~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~~p~NPtG~~~s~~ 185 (393)
T TIGR03538 107 AQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVW-RRCQLLFVCSPGNPTGAVLSLD 185 (393)
T ss_pred HHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHh-hcceEEEEeCCCCCcCcccCHH
Confidence 9999999986 9999999999999999999999999964 347889999999887 5899999999999999999887
Q ss_pred HH--HHHHhhhhC
Q 025730 239 SW--IWGISSEHN 249 (249)
Q Consensus 239 e~--i~~i~~~~~ 249 (249)
++ +..+|++||
T Consensus 186 ~~~~l~~~a~~~~ 198 (393)
T TIGR03538 186 TLKKLIELADQYG 198 (393)
T ss_pred HHHHHHHHHHHCC
Confidence 54 556777764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=197.60 Aligned_cols=156 Identities=14% Similarity=0.210 Sum_probs=136.3
Q ss_pred CCCCeeeccCCCCC----CCCCHHHHHHHHh-ccC--CCCC-CCcChHHHHHHHHHHc------CCCCCCEEEeCCHHHH
Q 025730 93 KPEDIVKIDANENP----YGPPPEVREALGQ-LKF--PYIY-PDPESRRLRAALAKDS------GLESDHILVGCGADEL 158 (249)
Q Consensus 93 ~~~~~I~L~~~~~~----~~~p~~v~~al~~-~~~--~~~Y-p~~g~~~lr~~la~~~------~~~~~~I~vt~Ga~~~ 158 (249)
..+++|+|+.|+++ +++|+.+.+++.+ +.. ..+| |..|..+||+++++++ ++++++|++|+|++++
T Consensus 30 ~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~a 109 (409)
T PLN00143 30 DHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHA 109 (409)
T ss_pred CCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHH
Confidence 34679999999998 8999999998876 332 2569 6678999999999997 3688999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
|.+++++++++||.|++++|+|..|...++..|++++.++.. +++.+|+++++++++ .+++++++||||||||.+++
T Consensus 110 l~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~~~~~nP~NPTG~~~s 188 (409)
T PLN00143 110 AEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIAD-ENTIAMVIINPGNPCGSVYS 188 (409)
T ss_pred HHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcc-cCCEEEEEECCCCCCCCccC
Confidence 999999999999999999999999999999999999999863 467899999999887 67899999999999999998
Q ss_pred hHHH--HHHHhhhhC
Q 025730 237 TSSW--IWGISSEHN 249 (249)
Q Consensus 237 ~~e~--i~~i~~~~~ 249 (249)
.+++ +.++|++||
T Consensus 189 ~~~~~~l~~~a~~~~ 203 (409)
T PLN00143 189 YEHLNKIAETARKLG 203 (409)
T ss_pred HHHHHHHHHHHHHcC
Confidence 8765 556777764
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=194.35 Aligned_cols=160 Identities=29% Similarity=0.483 Sum_probs=132.6
Q ss_pred HHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHHcCCC
Q 025730 66 FIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145 (249)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~~~~~ 145 (249)
+.+..+..+.+|.+... ....+.|+|+.|+|++++++.+ ......+||+.+..+||+++|+++|++
T Consensus 11 ~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~ne~~~~~~~~~-----~~~~~~~Yp~~~~~~Lr~aia~~~~~~ 76 (354)
T PRK04635 11 LARPELLALTPYQSARR---------IGGRGDIWINANESPFNNEYKL-----DLARLNRYPECQPPELINAYSAYAGVA 76 (354)
T ss_pred HhhHHhhcCCCCCCCCC---------cCCCCcEEeeCCCCCCCCChhh-----hhHHhccCCCCCHHHHHHHHHHHhCcC
Confidence 44556666666643211 1124569999999999988653 112237899888899999999999999
Q ss_pred CCCEEEeCCHHHHHHHHHHHhcCCC-CeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEE
Q 025730 146 SDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFL 224 (249)
Q Consensus 146 ~~~I~vt~Ga~~~l~~~~~~~~~pG-d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l 224 (249)
+++|++|+|++++|.+++++++++| |+|++++|+|..|...++..|++++.+|.++++.+|++.+++ + .++|+|+|
T Consensus 77 ~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~~~~l~~-~--~~~~li~i 153 (354)
T PRK04635 77 PEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLTADYQLPLDYIEQ-L--DGAKLVFI 153 (354)
T ss_pred HHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHh-c--cCCCEEEE
Confidence 9999999999999999999999999 999999999999999999999999999987778999999873 3 47999999
Q ss_pred cCCCCccccCCChHHHHH
Q 025730 225 TSPNNPDGRFSWTSSWIW 242 (249)
Q Consensus 225 ~~PnNPTG~~~~~~e~i~ 242 (249)
||||||||.+++.+++.+
T Consensus 154 ~nP~NPTG~~~~~~~l~~ 171 (354)
T PRK04635 154 CNPNNPTGTVIDRADIEQ 171 (354)
T ss_pred eCCCCCCCccCCHHHHHH
Confidence 999999999987765543
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-24 Score=198.55 Aligned_cols=156 Identities=20% Similarity=0.323 Sum_probs=134.6
Q ss_pred CCCCeeeccCCCCC----CCCCHHHHHHHHh-cc--CCCCC-CCcChHHHHHHHHHHc------CCCCCCEEEeCCHHHH
Q 025730 93 KPEDIVKIDANENP----YGPPPEVREALGQ-LK--FPYIY-PDPESRRLRAALAKDS------GLESDHILVGCGADEL 158 (249)
Q Consensus 93 ~~~~~I~L~~~~~~----~~~p~~v~~al~~-~~--~~~~Y-p~~g~~~lr~~la~~~------~~~~~~I~vt~Ga~~~ 158 (249)
+..++|+|+.|++. +.+++++.+++.+ +. ....| |..|..+||+++|+++ ++++++|++|+|++++
T Consensus 64 ~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~a 143 (462)
T PLN02187 64 VNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQG 143 (462)
T ss_pred CCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHH
Confidence 45789999999987 5567788887765 32 23578 6678999999999997 3689999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
|.++++++++|||+|++++|+|..|...++..|++++.++. ++++++|+++++++++ .+++++++||||||||.+++
T Consensus 144 l~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~-~~~~~v~i~nP~NPTG~v~s 222 (462)
T PLN02187 144 IEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD-ENTVAMVVINPNNPCGNVYS 222 (462)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcC-CCcEEEEEeCCCCCCCCccC
Confidence 99999999999999999999999999999999999999985 3568999999999987 68999999999999999998
Q ss_pred hHHH--HHHHhhhhC
Q 025730 237 TSSW--IWGISSEHN 249 (249)
Q Consensus 237 ~~e~--i~~i~~~~~ 249 (249)
.+++ +..+|++||
T Consensus 223 ~e~l~~i~~~a~~~~ 237 (462)
T PLN02187 223 HDHLKKVAETARKLG 237 (462)
T ss_pred HHHHHHHHHHHHHCC
Confidence 8754 566777764
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=202.29 Aligned_cols=182 Identities=19% Similarity=0.236 Sum_probs=143.2
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHhCC---------CCCCeeeccCCCCC----------------CCC------------
Q 025730 67 IRSHLRKLKPYQPILPFEVLSIQLGR---------KPEDIVKIDANENP----------------YGP------------ 109 (249)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~g~---------~~~~~I~L~~~~~~----------------~~~------------ 109 (249)
+++++..+.+. ....+...+.+... +..++|+|+.|+|. +.+
T Consensus 10 ~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~ 88 (481)
T PTZ00377 10 INPRVVAAEYA-VRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSL 88 (481)
T ss_pred cCHHHhhhhhh-cCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCcccccc
Confidence 45556555554 33445555544422 45789999999995 666
Q ss_pred -CHHHHHHHHh----cc-CCCCCCC-cChHHHHHHHHHHcC------CCCCCEEEeCCHHHHHHHHHHHhc-CCCCeEEE
Q 025730 110 -PPEVREALGQ----LK-FPYIYPD-PESRRLRAALAKDSG------LESDHILVGCGADELIDLIMRCVL-DPGDKIVD 175 (249)
Q Consensus 110 -p~~v~~al~~----~~-~~~~Yp~-~g~~~lr~~la~~~~------~~~~~I~vt~Ga~~~l~~~~~~~~-~pGd~Vlv 175 (249)
|..+.+++.+ .. ....|+. .|..+||++++++++ +++++|++|+|++++|.+++++++ ++||.|++
T Consensus 89 ~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv 168 (481)
T PTZ00377 89 FPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMI 168 (481)
T ss_pred CCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEE
Confidence 3366666543 11 2256854 589999999999973 678999999999999999999998 79999999
Q ss_pred cCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhcc-----CCceEEEEcCCCCccccCCChHHH--HHHHhh
Q 025730 176 CPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVER-----EKPKCIFLTSPNNPDGRFSWTSSW--IWGISS 246 (249)
Q Consensus 176 ~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~-----~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~ 246 (249)
++|+|..|...++..|++++.++.+ ++|++|+++++++++. .++|+|+++|||||||.+++.+++ +..+|+
T Consensus 169 ~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~ 248 (481)
T PTZ00377 169 PIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCY 248 (481)
T ss_pred CCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999964 4578999999999863 178999999999999999988754 667888
Q ss_pred hhC
Q 025730 247 EHN 249 (249)
Q Consensus 247 ~~~ 249 (249)
+||
T Consensus 249 ~~~ 251 (481)
T PTZ00377 249 EKG 251 (481)
T ss_pred HCC
Confidence 775
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-24 Score=191.77 Aligned_cols=167 Identities=28% Similarity=0.438 Sum_probs=141.1
Q ss_pred CCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHH
Q 025730 79 PILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADE 157 (249)
Q Consensus 79 ~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~ 157 (249)
++..+..++++.|....++++|+.|+|++++|+.+.+++.+ +....+||+.+..+||+++++++++++++|++|+|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~ 82 (354)
T PRK06358 3 HGGNINEIAREKGLTKNMILDFSANINPLGVPESLKQAITENLDKLVEYPDPDYLELRKRIASFEQLDLENVILGNGATE 82 (354)
T ss_pred CCccHHHHHHHhCCCccceEEecCCCCCCCCCHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhCCChhhEEECCCHHH
Confidence 34456677788887666789999999999999999999886 44457799888889999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 158 ~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
+|.++++++ .+ +.|++++|+|..|...++..|++++.++.+. ++.+| +++.+.+. .++++|+++|||||||.++
T Consensus 83 ~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~-~~~~~v~~~~P~NPtG~~~ 158 (354)
T PRK06358 83 LIFNIVKVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIK-EEIDLVFLCNPNNPTGQLI 158 (354)
T ss_pred HHHHHHHHh-CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhc-cCCCEEEEeCCCCCCCCcc
Confidence 999999986 44 6899999999999999999999999999643 46788 66666665 5799999999999999999
Q ss_pred ChHHH--HHHHhhhhC
Q 025730 236 WTSSW--IWGISSEHN 249 (249)
Q Consensus 236 ~~~e~--i~~i~~~~~ 249 (249)
+.+++ +..+|++||
T Consensus 159 ~~~~~~~l~~~a~~~~ 174 (354)
T PRK06358 159 SKEEMKKILDKCEKRN 174 (354)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 88755 556777764
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-24 Score=190.16 Aligned_cols=163 Identities=37% Similarity=0.637 Sum_probs=136.3
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCCcChHHHHHHHHHHcC
Q 025730 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPDPESRRLRAALAKDSG 143 (249)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~~g~~~lr~~la~~~~ 143 (249)
+|+.+..+++|..+ ...++|+|+.|++++++++.+.+++.+ +. ...+||+.|..+||++++++++
T Consensus 2 ~~~~~~~~~~~~~~------------~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~g~~~lr~~ia~~~~ 69 (337)
T PRK03967 2 IRELVKSFKPYRVV------------EGNYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRYPHITSDPLREAIAEFYG 69 (337)
T ss_pred chhhhhhcCCCCCC------------CCCceEEecCCCCCCCCCHHHHHHHHHHhhcCccccCCCCCHHHHHHHHHHHhC
Confidence 35556666666221 123679999999999999999888875 32 2467988889999999999999
Q ss_pred CCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEE
Q 025730 144 LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIF 223 (249)
Q Consensus 144 ~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~ 223 (249)
+++++|++|+|++++|.+++..+ +||+|+++.|+|..|...++..|++++.++.++++++|++.+++.+ .++++++
T Consensus 70 ~~~~~I~~t~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~--~~~~~v~ 145 (337)
T PRK03967 70 LDAENIAVGNGSDELISYLVKLF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKA--KNASAVF 145 (337)
T ss_pred cCcceEEEcCCHHHHHHHHHHHh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhc--cCCCEEE
Confidence 99999999999999999998865 7999999999999999988999999999998777899999998875 4689999
Q ss_pred EcCCCCccccCCChHHHHHHHhh
Q 025730 224 LTSPNNPDGRFSWTSSWIWGISS 246 (249)
Q Consensus 224 l~~PnNPTG~~~~~~e~i~~i~~ 246 (249)
++|||||||.+++.+++. .+++
T Consensus 146 ~~~P~NPtG~~~~~~~l~-~i~~ 167 (337)
T PRK03967 146 ICSPNNPTGNLQPEEEIL-KVLE 167 (337)
T ss_pred EeCCCCCCCCCCCHHHHH-HHHh
Confidence 999999999998776554 4443
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=193.89 Aligned_cols=155 Identities=24% Similarity=0.382 Sum_probs=133.9
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCC-CCcChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIY-PDPESRRLRAALAKDS----G--LESD-HILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Y-p~~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~~ 162 (249)
+.++|+|+.|.+++++++.+.+++.+ +. ...+| |..|..+||+++++++ | ++++ +|++|+|+++++.++
T Consensus 31 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~ 110 (389)
T PRK08068 31 GHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVEL 110 (389)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHH
Confidence 45689999999888888888888765 32 23679 4678999999999997 4 6777 899999999999999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~ 240 (249)
+..++++||+|++++|+|..|...++..|++++.++.++ ++.+|+++++++++ .++++|++||||||||.+++.+++
T Consensus 111 ~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~~P~NPTG~~~s~~~~ 189 (389)
T PRK08068 111 PQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVA-EKAKLMYLNYPNNPTGAVATKAFF 189 (389)
T ss_pred HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcc-ccceEEEEECCCCCCCCcCCHHHH
Confidence 999999999999999999999999999999999999753 57789999999987 689999999999999999998855
Q ss_pred --HHHHhhhhC
Q 025730 241 --IWGISSEHN 249 (249)
Q Consensus 241 --i~~i~~~~~ 249 (249)
+.++|++||
T Consensus 190 ~~l~~la~~~~ 200 (389)
T PRK08068 190 EETVAFAKKHN 200 (389)
T ss_pred HHHHHHHHHcC
Confidence 556788764
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=189.36 Aligned_cols=154 Identities=26% Similarity=0.418 Sum_probs=138.2
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCC-CCCCCcChHHHHHHHHHHc------CCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFP-YIYPDPESRRLRAALAKDS------GLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~-~~Yp~~g~~~lr~~la~~~------~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
+++++|.+.+++|+.||.+++|+++ ++++ ++|| .+.+++.+++++|+ .++++.|++++|...++.++++.+
T Consensus 25 ~DvlPmWVADMDf~~pp~i~~Al~~rvdhGvfGY~-~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~ 103 (388)
T COG1168 25 EDVLPMWVADMDFPTPPEIIEALRERVDHGVFGYP-YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRAL 103 (388)
T ss_pred CCcceeeeecccCCCCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHh
Confidence 7899999999999999999999987 6665 7888 45667888888875 478899999999999999999999
Q ss_pred cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC---CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 167 LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR---KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 167 ~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~---~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
.+|||.|++..|.|+++....+..|.+++..|+ +..+.+|+++|++++.+.++|+.++||||||||.+++.+++ +
T Consensus 104 T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i 183 (388)
T COG1168 104 TKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKI 183 (388)
T ss_pred CcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHH
Confidence 999999999999999999999999999999994 34467799999999987778999999999999999888866 7
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.+||++||
T Consensus 184 ~elc~kh~ 191 (388)
T COG1168 184 AELCLRHG 191 (388)
T ss_pred HHHHHHcC
Confidence 88999997
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=189.88 Aligned_cols=154 Identities=25% Similarity=0.349 Sum_probs=132.3
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-c-cCCCCCCC-cChHHHHHHHHHHc------CCCCCCEEEeCCHHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-L-KFPYIYPD-PESRRLRAALAKDS------GLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~-~~~~~Yp~-~g~~~lr~~la~~~------~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
+++|+|+.|++++++++.+.+++.. . .....|++ .|..+||+++++++ ++++++|++|+|+++++.+++.+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~ 108 (384)
T PRK06348 29 PDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQS 108 (384)
T ss_pred CCcEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHH
Confidence 4679999999999988888775543 2 23467865 47899999999997 46889999999999999999999
Q ss_pred hcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 166 ~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
++++||+|++++|+|..|...++..|++++.++. ++++.+|+++++++++ .++|+|++++||||||.+++.+++ +
T Consensus 109 ~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~~p~NPtG~~~s~~~~~~l 187 (384)
T PRK06348 109 ILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALIT-SKTKAIILNSPNNPTGAVFSKETLEEI 187 (384)
T ss_pred hcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhC-cCccEEEEeCCCCCCCcCCCHHHHHHH
Confidence 9999999999999999999999999999999985 3457799999999987 689999999999999999987755 5
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|+++|
T Consensus 188 ~~~a~~~~ 195 (384)
T PRK06348 188 AKIAIEYD 195 (384)
T ss_pred HHHHHHCC
Confidence 66787764
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=192.04 Aligned_cols=162 Identities=19% Similarity=0.289 Sum_probs=132.6
Q ss_pred HHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCC-cChHHHHHHHHHHc----C--CCCC-CEEEeCCH
Q 025730 87 SIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPD-PESRRLRAALAKDS----G--LESD-HILVGCGA 155 (249)
Q Consensus 87 ~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~-~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga 155 (249)
+......+.++|+|+.+.++.++|+.+.+++.. +. ....|++ .|.++||+++++++ + ++++ +|++|+|+
T Consensus 27 ~~~~~~~g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~ 106 (394)
T PRK05942 27 KARAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGS 106 (394)
T ss_pred HHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccCh
Confidence 333333455689999998877767767766543 32 2367865 47899999999997 4 4677 58999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 156 ~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
+++|.+++.+++++||+|++++|+|..|...+...|++++.++.+ ++|.+|++++++.++ +++|+|+++|||||||.
T Consensus 107 ~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~~P~NPtG~ 185 (394)
T PRK05942 107 KEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA-QQAKILYFNYPSNPTTA 185 (394)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcc-ccceEEEEcCCCCCCCC
Confidence 999999999999999999999999999988888899999999864 357799999999987 68999999999999999
Q ss_pred CCChHHH--HHHHhhhhC
Q 025730 234 FSWTSSW--IWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~--i~~i~~~~~ 249 (249)
+++.+++ +.++|++||
T Consensus 186 ~~s~~~~~~i~~~a~~~~ 203 (394)
T PRK05942 186 TAPREFFEEIVAFARKYE 203 (394)
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 9987754 566788764
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=190.12 Aligned_cols=154 Identities=22% Similarity=0.405 Sum_probs=134.2
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCC-cChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPD-PESRRLRAALAKDS----G--LESD-HILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~-~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~~~~ 164 (249)
.++|+|+.|.+++++++.+.+++.+ +.. ...|++ .|.++||+++++++ + ++++ +|++|+|+++++.+++.
T Consensus 54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~ 133 (413)
T PLN00175 54 HGAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATIL 133 (413)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHH
Confidence 4789999999999999988888875 332 367964 58999999999987 3 5676 79999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
++++|||+|++++|+|..|...++..|++++.++.+ +++.+|++++++++. .++|+|+++|||||||.+++.+++ +
T Consensus 134 ~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~-~~~k~i~i~~p~NPtG~~~s~~~l~~l 212 (413)
T PLN00175 134 GLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFT-SKTRAILINTPHNPTGKMFTREELELI 212 (413)
T ss_pred HhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcC-cCceEEEecCCCCCCCcCCCHHHHHHH
Confidence 999999999999999999999999999999999964 458999999999997 689999999999999999987754 6
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
..+|++||
T Consensus 213 ~~~a~~~~ 220 (413)
T PLN00175 213 ASLCKEND 220 (413)
T ss_pred HHHHHHcC
Confidence 67788765
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=189.88 Aligned_cols=156 Identities=23% Similarity=0.386 Sum_probs=133.3
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCC-cChHHHHHHHHHHc----CC--CCC-CEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPD-PESRRLRAALAKDS----GL--ESD-HILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~-~g~~~lr~~la~~~----~~--~~~-~I~vt~Ga~~~l~~ 161 (249)
.++++++|+.|++++++++.+.+++.+ +. ...+|++ .|.++||+++++++ |+ +++ +|++|+|++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~ 106 (383)
T TIGR03540 27 EGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAH 106 (383)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHH
Confidence 346789999999999999988888775 22 2367976 47899999999986 33 555 69999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
+++.++++||+|++++|+|..|...++..|++++.++.+. ++.+|++++++++. .++|+|++||||||||.+++.++
T Consensus 107 ~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~-~~~~~v~i~~P~NPtG~~~~~~~ 185 (383)
T TIGR03540 107 IPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA-KKAKLMFINYPNNPTGAVAPLKF 185 (383)
T ss_pred HHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcc-ccceEEEEeCCCCCcCccCCHHH
Confidence 9999999999999999999999999999999999999643 46789999999887 68999999999999999998874
Q ss_pred H--HHHHhhhhC
Q 025730 240 W--IWGISSEHN 249 (249)
Q Consensus 240 ~--i~~i~~~~~ 249 (249)
+ +.++|++||
T Consensus 186 ~~~i~~~a~~~~ 197 (383)
T TIGR03540 186 FKELVEFAKEYN 197 (383)
T ss_pred HHHHHHHHHHcC
Confidence 4 667888775
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=190.72 Aligned_cols=156 Identities=22% Similarity=0.392 Sum_probs=132.9
Q ss_pred CCCCeeeccCCCC---CCCCCHHHHHHHHh-ccCCCCCCCc-ChHHHHHHHHHHc------CCCCCCEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANEN---PYGPPPEVREALGQ-LKFPYIYPDP-ESRRLRAALAKDS------GLESDHILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~---~~~~p~~v~~al~~-~~~~~~Yp~~-g~~~lr~~la~~~------~~~~~~I~vt~Ga~~~l~~ 161 (249)
.+.++|+|+.|.+ ++++++.+.+++.+ ......|++. |.++||+++++++ ++++++|++|+|+++++.+
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~ 110 (404)
T PRK09265 31 EGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVM 110 (404)
T ss_pred cCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHH
Confidence 4568899999866 56688888888765 3344679654 7899999999998 6889999999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
++++++++||+|++++|+|..|...++..|++++.++.+ +++.+|+++++++++ .++++|+++|||||||.+++.++
T Consensus 111 ~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~~P~NPtG~~~~~~~ 189 (404)
T PRK09265 111 AMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKIT-PRTKAIVIINPNNPTGAVYSKEL 189 (404)
T ss_pred HHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcc-ccceEEEEECCCCCCCcCCCHHH
Confidence 999999999999999999999999999999999988754 357799999999987 68999999999999999988664
Q ss_pred H--HHHHhhhhC
Q 025730 240 W--IWGISSEHN 249 (249)
Q Consensus 240 ~--i~~i~~~~~ 249 (249)
+ +..+|+++|
T Consensus 190 ~~~i~~~a~~~~ 201 (404)
T PRK09265 190 LEEIVEIARQHN 201 (404)
T ss_pred HHHHHHHHHHCC
Confidence 4 566777765
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=190.10 Aligned_cols=147 Identities=32% Similarity=0.577 Sum_probs=129.7
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeE
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKI 173 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~V 173 (249)
...++|+.|++++++++.+.+++.+ .....+|++++..+||+++|+++++++++|++|+|++++|.+++..++++||.|
T Consensus 32 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v 111 (369)
T PRK08153 32 PFRARIGANESGFGPSPSVIAAMREAAAEIWKYGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPV 111 (369)
T ss_pred cceeEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEE
Confidence 3457999999999999999999875 333367887778999999999999999999999999999999999999999999
Q ss_pred EEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHH
Q 025730 174 VDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIW 242 (249)
Q Consensus 174 lv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~ 242 (249)
++++|+|+.|...++..|++++.+|.+.+ .+|++++++.+.+.++++|++||||||||.+++.+++.+
T Consensus 112 lv~~p~y~~~~~~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~ 179 (369)
T PRK08153 112 VTSLGAYPTFNYHVAGFGGRLVTVPYRDD-REDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVA 179 (369)
T ss_pred EECCCcchHHHHHHHHcCCeEEEeeCCCC-CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHH
Confidence 99999999999888899999999997544 689999988775568999999999999999988776543
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=190.01 Aligned_cols=159 Identities=25% Similarity=0.332 Sum_probs=136.2
Q ss_pred hCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCCC-cChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHH
Q 025730 90 LGRKPEDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYPD-PESRRLRAALAKDS----G--LESDHILVGCGADELID 160 (249)
Q Consensus 90 ~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp~-~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~ 160 (249)
.....+++++|+.|++++++++.+.+++.+ +. ....|++ .|.++||+++++++ | +++++|++|+|++++|.
T Consensus 25 ~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~ 104 (388)
T PRK07337 25 LERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALL 104 (388)
T ss_pred HHhcCCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHH
Confidence 333456789999999999888888888876 32 3367865 47899999999996 3 57899999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 161 LIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 161 ~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
+++..++++||+|++++|+|..+...++..|++++.++.+ +++.+|++++++.++ +++++|+++|||||||.+++.+
T Consensus 105 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~NPtG~~~~~~ 183 (388)
T PRK07337 105 LACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWG-ERTRGVLLASPSNPTGTSIAPD 183 (388)
T ss_pred HHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcC-ccceEEEEECCCCCCCcCcCHH
Confidence 9999999999999999999999999889999999999974 357899999999997 6899999999999999999877
Q ss_pred HH--HHHHhhhhC
Q 025730 239 SW--IWGISSEHN 249 (249)
Q Consensus 239 e~--i~~i~~~~~ 249 (249)
++ +.++|+++|
T Consensus 184 ~~~~i~~~a~~~~ 196 (388)
T PRK07337 184 ELRRIVEAVRARG 196 (388)
T ss_pred HHHHHHHHHHHCC
Confidence 54 566777764
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=192.11 Aligned_cols=156 Identities=22% Similarity=0.334 Sum_probs=135.0
Q ss_pred CCCCeeeccCCCCC----CCCCHHHHHHHHh-cc--CCCCCCCc-ChHHHHHHHHHHcC------------CCCCCEEEe
Q 025730 93 KPEDIVKIDANENP----YGPPPEVREALGQ-LK--FPYIYPDP-ESRRLRAALAKDSG------------LESDHILVG 152 (249)
Q Consensus 93 ~~~~~I~L~~~~~~----~~~p~~v~~al~~-~~--~~~~Yp~~-g~~~lr~~la~~~~------------~~~~~I~vt 152 (249)
.++++|+|+.|.++ +.+++.+.+++.+ +. ...+|++. |..+||++++++++ +++++|++|
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it 110 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLC 110 (412)
T ss_pred CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEe
Confidence 35678999999986 5678889988876 33 23679765 79999999999985 678999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCc
Q 025730 153 CGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNP 230 (249)
Q Consensus 153 ~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNP 230 (249)
+|++++|.+++++++++||+|++++|+|..|...++..|++++.++.+ +++++|+++++++++ .++++|+++|||||
T Consensus 111 ~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~-~~~~~i~~~~p~NP 189 (412)
T PTZ00433 111 SGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD-DRTKALIMTNPSNP 189 (412)
T ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhc-cCceEEEEeCCCCC
Confidence 999999999999999999999999999999999999999999999964 457999999999887 58999999999999
Q ss_pred cccCCChHHH--HHHHhhhhC
Q 025730 231 DGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~~e~--i~~i~~~~~ 249 (249)
||.+++.+++ +..+|++||
T Consensus 190 tG~~~s~~~~~~l~~~a~~~~ 210 (412)
T PTZ00433 190 CGSNFSRKHVEDIIRLCEELR 210 (412)
T ss_pred CCcccCHHHHHHHHHHHHHcC
Confidence 9999987755 566777764
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=186.81 Aligned_cols=152 Identities=25% Similarity=0.404 Sum_probs=132.3
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCc-ChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHHHHHHhc
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LKFPYIYPDP-ESRRLRAALAKDS----G--LESD-HILVGCGADELIDLIMRCVL 167 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~-g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~~~~~~~ 167 (249)
+++|+.+.+++++++.+.+++.+ ......|+++ |..+||+++++++ | ++++ +|++|+|+++++.+++..++
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~ 81 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI 81 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc
Confidence 58999999999989999999886 3344679764 7899999999996 5 5676 89999999999999999999
Q ss_pred CCC---CeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--
Q 025730 168 DPG---DKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW-- 240 (249)
Q Consensus 168 ~pG---d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~-- 240 (249)
++| |+|+++.|+|..|...++..|++++.++.+ +++.+|++++++++. .++|++++++||||||.+++.+++
T Consensus 82 ~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~~~~~~~~ 160 (350)
T TIGR03537 82 DPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSIL-EETKIVWINYPHNPTGATAPRSYLKE 160 (350)
T ss_pred CCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhh-hccEEEEEeCCCCCcCcccCHHHHHH
Confidence 987 699999999999999999999999999974 357789999999987 589999999999999999887644
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.++|++||
T Consensus 161 l~~~a~~~~ 169 (350)
T TIGR03537 161 TIAMCREHG 169 (350)
T ss_pred HHHHHHHcC
Confidence 667788765
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=186.66 Aligned_cols=151 Identities=31% Similarity=0.562 Sum_probs=133.8
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeE
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKI 173 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~V 173 (249)
.++|+|+.|++++++++.+.+++.+ ......||+.|..+||+++|+++++++++|++|+|+++++..++..++++||+|
T Consensus 22 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~V 101 (352)
T PRK03321 22 PGAIKLSSNETPFGPLPSVRAAIARAAAGVNRYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEV 101 (352)
T ss_pred ccceeccCCCCCCCCCHHHHHHHHHHHHhcCcCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEE
Confidence 4679999999999999999999876 334467888899999999999999999999999999999999999999999999
Q ss_pred EEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh
Q 025730 174 VDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 174 lv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
+++.|+|..|...++..|++++.++.+.++++|++.++++++ .++++|+++|||||||.+++.+++ .+++++
T Consensus 102 li~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~NPtG~~~~~~~l-~~l~~~ 173 (352)
T PRK03321 102 IFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAIT-DRTRLIFVCNPNNPTGTVVTPAEL-ARFLDA 173 (352)
T ss_pred EeCCCCHHHHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhc-cCCCEEEEeCCCCCcCCCcCHHHH-HHHHHh
Confidence 999999999999999999999999987668899999999997 689999999999999999876544 444443
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=190.35 Aligned_cols=155 Identities=21% Similarity=0.372 Sum_probs=133.8
Q ss_pred CCCeeeccCCCCC----CCCCHHHHHHHHh-ccC--CCCCCC-cChHHHHHHHHHHcC------CCCCCEEEeCCHHHHH
Q 025730 94 PEDIVKIDANENP----YGPPPEVREALGQ-LKF--PYIYPD-PESRRLRAALAKDSG------LESDHILVGCGADELI 159 (249)
Q Consensus 94 ~~~~I~L~~~~~~----~~~p~~v~~al~~-~~~--~~~Yp~-~g~~~lr~~la~~~~------~~~~~I~vt~Ga~~~l 159 (249)
+.++|+|+.|++. +++++.+.+++.+ +.. ...|+. .|..+||++++++++ +++++|++|+|++++|
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al 130 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI 130 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence 4579999999985 7788889888876 332 357864 589999999999973 5789999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
.+++..+++|||+|++++|+|..|...+...|++++.++. +++|.+|++.+++.++ .++++++++|||||||.+++.
T Consensus 131 ~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~P~NPtG~v~~~ 209 (430)
T PLN00145 131 EIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALAD-ENTVAMVIINPNNPCGSVYSY 209 (430)
T ss_pred HHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhC-cCceEEEEeCCCCCCCCCCCH
Confidence 9999999999999999999999999999999999999884 4568999999999887 689999999999999999987
Q ss_pred HHH--HHHHhhhhC
Q 025730 238 SSW--IWGISSEHN 249 (249)
Q Consensus 238 ~e~--i~~i~~~~~ 249 (249)
+++ +.++|+++|
T Consensus 210 ~~l~~i~~~a~~~~ 223 (430)
T PLN00145 210 EHLAKIAETARKLG 223 (430)
T ss_pred HHHHHHHHHHHHcC
Confidence 754 566788765
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=185.87 Aligned_cols=152 Identities=43% Similarity=0.794 Sum_probs=133.8
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCe
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK 172 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~ 172 (249)
+.++|+|+.|++++++|+.+.+++.+ .....+|+++...+||+++++++++++++|++|+|+++++..++.+++++||+
T Consensus 18 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~~~gd~ 97 (346)
T TIGR01141 18 GKEVIKLNSNENPFGPPPKAKEALRAEADKLHRYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDA 97 (346)
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhcCCCCE
Confidence 35799999999999999999999886 33346788776799999999999998999999999999999999999999999
Q ss_pred EEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh
Q 025730 173 IVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 173 Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
|++++|+|..|...++..|++++.++.+.++.+|+++++++++ .++++|++++||||||.+++.++ +.++++.
T Consensus 98 v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~~p~NptG~~~~~~~-~~~l~~~ 170 (346)
T TIGR01141 98 VLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAID-DKPKLVFLCSPNNPTGNLLSRSD-IEAVLER 170 (346)
T ss_pred EEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcC-CCCCEEEEeCCCCCCCCCCCHHH-HHHHHHh
Confidence 9999999999998889999999999987778899999999886 68999999999999999976554 4445544
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=189.48 Aligned_cols=155 Identities=17% Similarity=0.287 Sum_probs=131.4
Q ss_pred CCCeeeccCCCCC-CCCCHHHHHHHHh-ccC--CCCCCC-cChHHHHHHHHHHc----C--CCC-CCEEEeCCHHHHHHH
Q 025730 94 PEDIVKIDANENP-YGPPPEVREALGQ-LKF--PYIYPD-PESRRLRAALAKDS----G--LES-DHILVGCGADELIDL 161 (249)
Q Consensus 94 ~~~~I~L~~~~~~-~~~p~~v~~al~~-~~~--~~~Yp~-~g~~~lr~~la~~~----~--~~~-~~I~vt~Ga~~~l~~ 161 (249)
+.+.|+|+.+++. +++++.+.+++.+ +.. ...|++ .|..+||+++++++ | +++ ++|++|+|++++|.+
T Consensus 38 ~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~ 117 (405)
T PRK06207 38 PGRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFL 117 (405)
T ss_pred CCCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHH
Confidence 4578999998866 5677777777765 322 257965 58999999999886 6 466 899999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-----CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-----SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-----~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
++.+++++||+|++++|+|..|...++..|++++.++.+ +++++|+++|+++++ .++++|++||||||||.+++
T Consensus 118 ~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~-~~~k~v~l~~P~NPTG~~~s 196 (405)
T PRK06207 118 AVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK-AGVRVFLFSNPNNPAGVVYS 196 (405)
T ss_pred HHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh-hcCeEEEECCCCCCCCcCCC
Confidence 999999999999999999999999999999999999864 368899999999987 67999999999999999998
Q ss_pred hHHH--HHHHhhhhC
Q 025730 237 TSSW--IWGISSEHN 249 (249)
Q Consensus 237 ~~e~--i~~i~~~~~ 249 (249)
.+++ +.++|++||
T Consensus 197 ~e~l~~l~~~a~~~~ 211 (405)
T PRK06207 197 AEEIAQIAALARRYG 211 (405)
T ss_pred HHHHHHHHHHHHHcC
Confidence 7754 666787764
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=189.37 Aligned_cols=156 Identities=19% Similarity=0.305 Sum_probs=135.8
Q ss_pred CCCCeeeccCCCCC----CCCCHHHHHHHHh-ccC--CCCC-CCcChHHHHHHHHHHcC------CCCCCEEEeCCHHHH
Q 025730 93 KPEDIVKIDANENP----YGPPPEVREALGQ-LKF--PYIY-PDPESRRLRAALAKDSG------LESDHILVGCGADEL 158 (249)
Q Consensus 93 ~~~~~I~L~~~~~~----~~~p~~v~~al~~-~~~--~~~Y-p~~g~~~lr~~la~~~~------~~~~~I~vt~Ga~~~ 158 (249)
.+.++|+|+.|++. +++|+.+.+++.+ +.. ...| |..|..+||++++++++ +++++|++|+|++++
T Consensus 29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 108 (409)
T PLN02656 29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQA 108 (409)
T ss_pred cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHH
Confidence 45689999999998 8889999998876 332 3679 56789999999999973 678999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
+.+++.+++++||+|++++|+|..|...++..|++++.++.. +++.+|+++++++++ .++++|+++|||||||.+++
T Consensus 109 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~~P~NPtG~~~s 187 (409)
T PLN02656 109 IDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALAD-QNTVALVIINPGNPCGNVYS 187 (409)
T ss_pred HHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhc-cCceEEEEECCCCCCCCCCC
Confidence 999999999999999999999999998888899999999963 457899999999887 67899999999999999998
Q ss_pred hHHH--HHHHhhhhC
Q 025730 237 TSSW--IWGISSEHN 249 (249)
Q Consensus 237 ~~e~--i~~i~~~~~ 249 (249)
.+++ +..+|++||
T Consensus 188 ~~~~~~i~~~a~~~~ 202 (409)
T PLN02656 188 YQHLKKIAETAEKLK 202 (409)
T ss_pred HHHHHHHHHHHHHcC
Confidence 7755 667888764
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=187.66 Aligned_cols=157 Identities=18% Similarity=0.300 Sum_probs=135.5
Q ss_pred CCCCCeeeccCCCCCCCCCHHHHHHHHhc-c--CCCCC-CCcChHHHHHHHHHHcC------CCCCCEEEeCCHHHHHHH
Q 025730 92 RKPEDIVKIDANENPYGPPPEVREALGQL-K--FPYIY-PDPESRRLRAALAKDSG------LESDHILVGCGADELIDL 161 (249)
Q Consensus 92 ~~~~~~I~L~~~~~~~~~p~~v~~al~~~-~--~~~~Y-p~~g~~~lr~~la~~~~------~~~~~I~vt~Ga~~~l~~ 161 (249)
..+.+.|+|+.+++++++++.+.+++... . ....| +..|.++||++++++++ +++++|++|+|+++++.+
T Consensus 26 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~ 105 (386)
T PRK07550 26 GADGPLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWA 105 (386)
T ss_pred hcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence 34566899999999998888888888752 2 23578 55689999999999873 678999999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH-
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS- 238 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~- 238 (249)
++.+++++||+|+++.|+|..+...++..|++++.++.+ .++.+|+++++++++ .++++|++++||||||.+++.+
T Consensus 106 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~-~~~~~v~~~~P~NPtG~~~~~~~ 184 (386)
T PRK07550 106 AMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT-PRTRAIALVTPNNPTGVVYPPEL 184 (386)
T ss_pred HHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc-ccCcEEEEeCCCCCCCcccCHHH
Confidence 999999999999999999999999999999999999975 356789999999998 6899999999999999999876
Q ss_pred -HHHHHHhhhhC
Q 025730 239 -SWIWGISSEHN 249 (249)
Q Consensus 239 -e~i~~i~~~~~ 249 (249)
+.+.++|++||
T Consensus 185 ~~~i~~~~~~~~ 196 (386)
T PRK07550 185 LHELYDLARRHG 196 (386)
T ss_pred HHHHHHHHHHcC
Confidence 44778888875
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=196.83 Aligned_cols=156 Identities=19% Similarity=0.346 Sum_probs=129.5
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHhc-c-------------CCCCCCCc-ChHHHHHHHHHHcC--------CCCCCE
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQL-K-------------FPYIYPDP-ESRRLRAALAKDSG--------LESDHI 149 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~~-~-------------~~~~Yp~~-g~~~lr~~la~~~~--------~~~~~I 149 (249)
.+..+|+|+.+||++.. +.+.+.+... . ...+|++. |.++||+++|++++ +++++|
T Consensus 36 ~p~g~i~L~~~En~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~I 114 (468)
T PLN02450 36 NPSGIIQMGLAENQLSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKL 114 (468)
T ss_pred CCCeeEEeehhHhHhhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHe
Confidence 34578999999999876 6666665542 1 12458764 78899999999983 688999
Q ss_pred EEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHH-HCCCEEEEecC--CCCCCCCHHHHHHhhcc-----CCceE
Q 025730 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAA-VNGAAVVKVPR--KSDFSLNVELIADAVER-----EKPKC 221 (249)
Q Consensus 150 ~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~-~~G~~v~~v~~--~~~~~id~e~l~~~i~~-----~~~k~ 221 (249)
++|+|++++|.+++.++++|||.|++++|+|..|...+. ..|++++.|+. ++++.+|++++++++++ .++|+
T Consensus 115 iit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~ 194 (468)
T PLN02450 115 VLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKG 194 (468)
T ss_pred EEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeE
Confidence 999999999999999999999999999999999988877 48999999996 46688899999998753 37899
Q ss_pred EEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 222 IFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 222 i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
|++||||||||.+++.+++ +..+|++||
T Consensus 195 v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~ 224 (468)
T PLN02450 195 VLITNPSNPLGTTTTRTELNLLVDFITAKN 224 (468)
T ss_pred EEEecCCCCCCcccCHHHHHHHHHHHHHCC
Confidence 9999999999999998865 556777764
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-23 Score=186.90 Aligned_cols=164 Identities=20% Similarity=0.328 Sum_probs=133.6
Q ss_pred HHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCC-cChHHHHHHHHHHc----C--CCCC-CEEEeCC
Q 025730 86 LSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPD-PESRRLRAALAKDS----G--LESD-HILVGCG 154 (249)
Q Consensus 86 ~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~-~g~~~lr~~la~~~----~--~~~~-~I~vt~G 154 (249)
...+....+.++++|+.+.++...|+.+.+++.. .. ....|++ .|..+||+++|+++ + ++++ +|++|+|
T Consensus 24 ~~~~~~~~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G 103 (403)
T PRK08636 24 LKMAARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMG 103 (403)
T ss_pred HHHHHHhcCCCEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCC
Confidence 3344444556789999999888777777766654 32 2467965 58999999999997 5 5676 7999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHH----HHhhcc--CCceEEEEcC
Q 025730 155 ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELI----ADAVER--EKPKCIFLTS 226 (249)
Q Consensus 155 a~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l----~~~i~~--~~~k~i~l~~ 226 (249)
++++|.++++++++|||.|++++|+|..|...++..|++++.++. ++++++|++.+ ++++++ .+++++++||
T Consensus 104 ~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~ 183 (403)
T PRK08636 104 SKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNF 183 (403)
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeC
Confidence 999999999999999999999999999999999999999999986 35588998754 555542 4789999999
Q ss_pred CCCccccCCChHHH--HHHHhhhhC
Q 025730 227 PNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 227 PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
||||||.+++.+++ +.++|++||
T Consensus 184 P~NPTG~~~s~~~~~~l~~~a~~~~ 208 (403)
T PRK08636 184 PHNPTTATVEKSFYERLVALAKKER 208 (403)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcC
Confidence 99999999999865 566788875
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=186.48 Aligned_cols=155 Identities=20% Similarity=0.351 Sum_probs=134.1
Q ss_pred CCCeeeccCCCCC----CCCCHHHHHHHHh-ccC--CCCC-CCcChHHHHHHHHHHcC-----CCCCCEEEeCCHHHHHH
Q 025730 94 PEDIVKIDANENP----YGPPPEVREALGQ-LKF--PYIY-PDPESRRLRAALAKDSG-----LESDHILVGCGADELID 160 (249)
Q Consensus 94 ~~~~I~L~~~~~~----~~~p~~v~~al~~-~~~--~~~Y-p~~g~~~lr~~la~~~~-----~~~~~I~vt~Ga~~~l~ 160 (249)
.+++++|+.|+++ +++++.+.+++.+ +.. ...| |..|..+||++++++++ +++++|++|+|+++++.
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~ 109 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIE 109 (401)
T ss_pred CCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHH
Confidence 4678999999984 7888999888876 332 2568 67789999999999996 78899999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 161 LIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 161 ~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
+++.+++++||+|++++|+|..|...++..|++++.++.+ +++++|++.++++++ .++++|+++|||||||.+++.+
T Consensus 110 ~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~~~~p~NPtG~~~~~~ 188 (401)
T TIGR01264 110 MCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLID-EKTAALIVNNPSNPCGSVFSRQ 188 (401)
T ss_pred HHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc-cCceEEEEcCCCCCCCCCCCHH
Confidence 9999999999999999999999999999999999999853 458899999999887 5789999999999999999877
Q ss_pred HH--HHHHhhhhC
Q 025730 239 SW--IWGISSEHN 249 (249)
Q Consensus 239 e~--i~~i~~~~~ 249 (249)
++ +.++|+++|
T Consensus 189 ~~~~l~~~a~~~~ 201 (401)
T TIGR01264 189 HLEEILAVAERQC 201 (401)
T ss_pred HHHHHHHHHHHCC
Confidence 54 566777764
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=189.50 Aligned_cols=158 Identities=21% Similarity=0.195 Sum_probs=134.5
Q ss_pred hCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCC-CcChHHHHHHHHHHcC-CCCCCEEEeCCHHHHHHHHHHH
Q 025730 90 LGRKPEDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYP-DPESRRLRAALAKDSG-LESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 90 ~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp-~~g~~~lr~~la~~~~-~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
++....++++|+.+++.+.+|+.+ +++.. +. ....|+ ..|.++||++++++++ +++++|++|+|+++++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~ 99 (373)
T PRK07324 21 YDIAESCIDSLTLEELLALAGKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYA 99 (373)
T ss_pred cccccCCCCCCcHHHHHhccCcch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHH
Confidence 344567899999999999888877 65543 32 235784 4689999999999984 7899999999999999999999
Q ss_pred hcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 166 ~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
++++||+|+++.|+|..|...++..|++++.++.+ .++.+|++++++.++ .++|+|+++|||||||.+++.+++ +
T Consensus 100 l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~-~~~kli~i~~p~NPtG~~~~~~~l~~i 178 (373)
T PRK07324 100 LVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVR-PNTKLICINNANNPTGALMDRAYLEEI 178 (373)
T ss_pred hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCC-CCCcEEEEeCCCCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999964 346789999999887 689999999999999999987644 6
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|++||
T Consensus 179 ~~~a~~~~ 186 (373)
T PRK07324 179 VEIARSVD 186 (373)
T ss_pred HHHHHHCC
Confidence 67788875
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=185.35 Aligned_cols=154 Identities=21% Similarity=0.407 Sum_probs=133.1
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCC-CCcChHHHHHHHHHHc----CCC--C-CCEEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LK-FPYIY-PDPESRRLRAALAKDS----GLE--S-DHILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Y-p~~g~~~lr~~la~~~----~~~--~-~~I~vt~Ga~~~l~~~~~ 164 (249)
.++|+|+.|++++++++.+.+++.+ +. ....| |..|..+||+++++++ |++ + ++|++|+|++++|.++++
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~ 108 (384)
T PRK12414 29 HDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAIS 108 (384)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHH
Confidence 5689999999999999999988875 32 23679 5568999999999875 653 3 689999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
+++.+||+|++++|+|..|...++..|++++.++.+ +++.+|++.++++++ .++|+|+++|||||||.+++.+++ +
T Consensus 109 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-~~~~~v~i~~p~NPTG~~~s~~~~~~i 187 (384)
T PRK12414 109 ALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAIT-PRTRMIIVNTPHNPSATVFSAADLARL 187 (384)
T ss_pred HhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcC-cccEEEEEcCCCCCCCcCCCHHHHHHH
Confidence 999999999999999999999999999999999975 467899999999997 689999999999999999987755 5
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
..+|++||
T Consensus 188 ~~~a~~~~ 195 (384)
T PRK12414 188 AQLTRNTD 195 (384)
T ss_pred HHHHHHCC
Confidence 66788765
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=185.22 Aligned_cols=158 Identities=26% Similarity=0.456 Sum_probs=134.8
Q ss_pred CCCCCCeeeccCCCC---CCCCCHHHHHHHHh-ccC-CCCCC-CcChHHHHHHHHHHc----C--CCCCCEEEeCCHHHH
Q 025730 91 GRKPEDIVKIDANEN---PYGPPPEVREALGQ-LKF-PYIYP-DPESRRLRAALAKDS----G--LESDHILVGCGADEL 158 (249)
Q Consensus 91 g~~~~~~I~L~~~~~---~~~~p~~v~~al~~-~~~-~~~Yp-~~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~ 158 (249)
+..+.++|+|+.|.+ ++++++.+.+++.+ +.. ...|+ ..|..+||+++++++ | +++++|++|+|++++
T Consensus 26 ~~~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 105 (398)
T PRK08363 26 EKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEA 105 (398)
T ss_pred HhcCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHH
Confidence 445578999999998 78889999998876 322 35684 578999999999997 3 688999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEe-cCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKV-PRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v-~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
+.+++.+++++||.|++++|+|..|...++..|++++.+ +.+ +++.+|++.++++++ .++++|+++|||||||.+++
T Consensus 106 l~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~~p~NPtG~~~~ 184 (398)
T PRK08363 106 LQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKIT-EKTKAIAVINPNNPTGALYE 184 (398)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCC-cceEEEEEECCCCCCCcCcC
Confidence 999999999999999999999999999999999999988 443 456799999999987 68899999999999999998
Q ss_pred hHHH--HHHHhhhhC
Q 025730 237 TSSW--IWGISSEHN 249 (249)
Q Consensus 237 ~~e~--i~~i~~~~~ 249 (249)
.+++ +.++|+++|
T Consensus 185 ~~~~~~l~~~a~~~~ 199 (398)
T PRK08363 185 KKTLKEILDIAGEHD 199 (398)
T ss_pred HHHHHHHHHHHHHcC
Confidence 7644 666787764
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=184.23 Aligned_cols=154 Identities=30% Similarity=0.460 Sum_probs=132.4
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCC-CcChHHHHHHHHHHcC------CCCC-CEEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYP-DPESRRLRAALAKDSG------LESD-HILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp-~~g~~~lr~~la~~~~------~~~~-~I~vt~Ga~~~l~~~~~ 164 (249)
+++|+|+.|++++++++.+.+++.+ +. ....|+ ..|..+||++++++++ ++++ +|++|+|++++|.+++.
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 99 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMR 99 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 4679999999999988888887765 32 235685 5789999999999973 4565 79999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW-- 240 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~-- 240 (249)
+++++||+|++++|+|..|...++..|++++.++.+ +++++|++++++++. .++++|++++||||||.+++.+++
T Consensus 100 ~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~~~~p~NPtG~~~s~~~~~~ 178 (378)
T PRK07682 100 AIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAIT-AKTKAILLCSPNNPTGAVLNKSELEE 178 (378)
T ss_pred HhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcC-cccEEEEEECCCCCcCcCcCHHHHHH
Confidence 999999999999999999999999999999999853 468999999999997 689999999999999999987744
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+..+|++||
T Consensus 179 l~~~~~~~~ 187 (378)
T PRK07682 179 IAVIVEKHD 187 (378)
T ss_pred HHHHHHHcC
Confidence 667888765
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=185.85 Aligned_cols=156 Identities=21% Similarity=0.340 Sum_probs=127.8
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCC-cChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPD-PESRRLRAALAKDS----G--LESD-HILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~-~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~ 161 (249)
.++++|+|+.|++++++++.+.+++.+ +. ...+|++ .|..+||+++++++ | ++++ +|++|+|++++|.+
T Consensus 28 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~ 107 (405)
T PRK09148 28 AGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFAN 107 (405)
T ss_pred cCCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHH
Confidence 345789999999999888888888765 32 2367965 47999999999987 4 5676 89999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCC--CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD--FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~--~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
++..++++||+|++++|+|..|...++..|++++.++.+.+ +..++++..+... .++++|+++|||||||.+++.++
T Consensus 108 ~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~-~~~~~v~l~~P~NPtG~~~s~~~ 186 (405)
T PRK09148 108 MAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSI-PKPIALIVNYPSNPTAYVADLDF 186 (405)
T ss_pred HHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhcc-ccceEEEEeCCCCCCCcCCCHHH
Confidence 99999999999999999999999999999999999996433 3334554444333 57899999999999999998875
Q ss_pred H--HHHHhhhhC
Q 025730 240 W--IWGISSEHN 249 (249)
Q Consensus 240 ~--i~~i~~~~~ 249 (249)
+ +.++|++||
T Consensus 187 l~~l~~~a~~~~ 198 (405)
T PRK09148 187 YKDVVAFAKKHD 198 (405)
T ss_pred HHHHHHHHHHcC
Confidence 4 667788765
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=184.83 Aligned_cols=161 Identities=21% Similarity=0.292 Sum_probs=129.8
Q ss_pred HHHHHhCCC-CCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCc-ChHHHHHHHHHHc----C--CCCCCEEEeCCH
Q 025730 85 VLSIQLGRK-PEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDP-ESRRLRAALAKDS----G--LESDHILVGCGA 155 (249)
Q Consensus 85 ~~~~~~g~~-~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~-g~~~lr~~la~~~----~--~~~~~I~vt~Ga 155 (249)
.+...+..+ +.++++|+.|++++++++.+.+++.+ ......|+++ |..+||+++++++ | +++++|++|+|+
T Consensus 13 ~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~ 92 (374)
T PRK05839 13 ELLKEITPNKEYKGLDLTIGEPQFETPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGT 92 (374)
T ss_pred HHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCc
Confidence 333434334 44899999999999999999998876 3445779764 7899999998875 5 689999999999
Q ss_pred HHHHHHHHHHhc--CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCcc
Q 025730 156 DELIDLIMRCVL--DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPD 231 (249)
Q Consensus 156 ~~~l~~~~~~~~--~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPT 231 (249)
+++|..++..++ .+||.|+++.|+|..|...++..|++++.++.+. ++.+|+++.+ + .++|+|+||||||||
T Consensus 93 ~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~--~~~k~v~i~nP~NPT 168 (374)
T PRK05839 93 REVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L--QEVDLVILNSPNNPT 168 (374)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h--ccccEEEEeCCCCCc
Confidence 999999988764 4789999999999999999999999999999743 4666655432 3 468999999999999
Q ss_pred ccCCChHHH--HHHHhhhhC
Q 025730 232 GRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~e~--i~~i~~~~~ 249 (249)
|.+++.+++ +.++|+++|
T Consensus 169 G~~~s~~~l~~i~~~~~~~~ 188 (374)
T PRK05839 169 GRTLSLEELIEWVKLALKHD 188 (374)
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999988865 455677764
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=183.30 Aligned_cols=154 Identities=25% Similarity=0.397 Sum_probs=134.0
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCC-cChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPD-PESRRLRAALAKDS----G--LESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~-~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
+++|+|+.|++++++++.+.+++.+ +.. ...|++ .|.++||+++++++ | +++++|++|+|+++++.+++..
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~ 103 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQA 103 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHH
Confidence 4689999999999999999999876 322 246865 58999999999986 5 7889999999999999999999
Q ss_pred hcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC---CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--
Q 025730 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK---SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW-- 240 (249)
Q Consensus 166 ~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~---~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~-- 240 (249)
++++||+|++++|+|..|...++..|++++.++.+ .+|.+|++++++.++ .++++|++++||||||.+++.+++
T Consensus 104 l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~p~NPtG~~~~~~~~~~ 182 (382)
T PRK06108 104 LVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAIT-PRTRALFINSPNNPTGWTASRDDLRA 182 (382)
T ss_pred hcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcC-ccceEEEEECCCCCCCcccCHHHHHH
Confidence 99999999999999999999999999999999964 346799999999987 689999999999999999987644
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.++|+++|
T Consensus 183 l~~~~~~~~ 191 (382)
T PRK06108 183 ILAHCRRHG 191 (382)
T ss_pred HHHHHHHCC
Confidence 667787764
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=187.24 Aligned_cols=156 Identities=20% Similarity=0.248 Sum_probs=129.1
Q ss_pred CCCCeeeccCCCC---CCCCCHHHHHHHHhc-c--CCCCC-CCcChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHH
Q 025730 93 KPEDIVKIDANEN---PYGPPPEVREALGQL-K--FPYIY-PDPESRRLRAALAKDS----G--LESDHILVGCGADELI 159 (249)
Q Consensus 93 ~~~~~I~L~~~~~---~~~~p~~v~~al~~~-~--~~~~Y-p~~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l 159 (249)
.+.++++|+.|++ .+.+|+.+.+++.+. . ...+| |..|.++||+++++++ | +++++|++|+|++++|
T Consensus 30 ~g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al 109 (433)
T PRK06855 30 LGVKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAI 109 (433)
T ss_pred ccccccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHH
Confidence 3457899999998 678999998888762 2 23578 4578999999999997 3 6788999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCChhHHHHH-HHCCCEEEEecCC--CCCCCCHHHHHHhhcc-CCceEEEEcCCCCccccCC
Q 025730 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDA-AVNGAAVVKVPRK--SDFSLNVELIADAVER-EKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vlv~~P~y~~~~~~~-~~~G~~v~~v~~~--~~~~id~e~l~~~i~~-~~~k~i~l~~PnNPTG~~~ 235 (249)
.+++. ++.|||.|++++|+|+.|.... ...|++++.++.+ ++|.+|+++++++++. .+++++++||||||||.++
T Consensus 110 ~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~ 188 (433)
T PRK06855 110 AKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVY 188 (433)
T ss_pred HHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCC
Confidence 99985 7899999999999999887553 3468999999864 4578999999999863 3679999999999999999
Q ss_pred ChHHH--HHHHhhhhC
Q 025730 236 WTSSW--IWGISSEHN 249 (249)
Q Consensus 236 ~~~e~--i~~i~~~~~ 249 (249)
+.+++ +.++|++||
T Consensus 189 s~~~~~~l~~~a~~~~ 204 (433)
T PRK06855 189 PKEILREIVDIAREYD 204 (433)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 99865 566788775
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=182.40 Aligned_cols=155 Identities=31% Similarity=0.494 Sum_probs=135.3
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCC-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCC
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPD-PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDP 169 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~p 169 (249)
..++|+|+.|++++++++.+.+++.+ +. ....|++ .|..+||+++++++++++++|++|+|+++++.+++++++.+
T Consensus 27 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~ 106 (380)
T PRK06225 27 DKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFLSP 106 (380)
T ss_pred cCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCC
Confidence 35689999999999999999999876 32 2356865 47899999999999999999999999999999999999999
Q ss_pred CCeEEEcCCCChhHHHHHHHCCCEEEEecCC---CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--HHHH
Q 025730 170 GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK---SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--IWGI 244 (249)
Q Consensus 170 Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~---~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i 244 (249)
||+|++++|+|..+...++..|++++.++.+ .++.+|++.+++.++ .++++|+++|||||||.+++.+++ +.++
T Consensus 107 gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~~p~NptG~~~~~~~~~~i~~~ 185 (380)
T PRK06225 107 GDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMD-ENTRLIYLIDPLNPLGSSYTEEEIKEFAEI 185 (380)
T ss_pred CCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcC-CCceEEEEeCCCCCCCcCCCHHHHHHHHHH
Confidence 9999999999999988889999999999853 247899999999997 689999999999999999987654 6677
Q ss_pred hhhhC
Q 025730 245 SSEHN 249 (249)
Q Consensus 245 ~~~~~ 249 (249)
|+++|
T Consensus 186 a~~~~ 190 (380)
T PRK06225 186 ARDND 190 (380)
T ss_pred HHHCC
Confidence 88765
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=182.90 Aligned_cols=154 Identities=25% Similarity=0.432 Sum_probs=133.6
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCC-CCcChHHHHHHHHHHc------CCCCCCEEEeCCHHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LK-FPYIY-PDPESRRLRAALAKDS------GLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Y-p~~g~~~lr~~la~~~------~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
.++|+|+.|++++++++.+.+++.. +. ....| |..|..+||+++++++ ++++++|++|+|+++++.+++.+
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~ 112 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFES 112 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHH
Confidence 4689999999999988888888876 32 22457 6778999999999997 36789999999999999999999
Q ss_pred hcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 166 ~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
++++||+|++++|+|..+...++..|++++.++.+. ++.+|++++++.++ .++++|+++|||||||.+++.+++ +
T Consensus 113 l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~-~~~~~v~i~~p~NPtG~~~~~~~~~~l 191 (391)
T PRK08361 113 LLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELIT-KRTRMIVINYPNNPTGATLDKEVAKAI 191 (391)
T ss_pred hcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc-cccEEEEEeCCCCCCCcCcCHHHHHHH
Confidence 999999999999999999999999999999999643 56899999999998 689999999999999999987644 5
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|+++|
T Consensus 192 ~~~~~~~~ 199 (391)
T PRK08361 192 ADIAEDYN 199 (391)
T ss_pred HHHHHHcC
Confidence 66777764
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=179.92 Aligned_cols=137 Identities=23% Similarity=0.311 Sum_probs=114.8
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEE
Q 025730 96 DIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVD 175 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv 175 (249)
.+|+|+.|+||++.. ....+||++...+||+++++++++++++|++|+|++++|.++++ ++++| .|++
T Consensus 17 ~~i~l~~Nenp~~~~----------~~~~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~~~~-~vv~ 84 (332)
T PRK06425 17 RIIDFSANINDFMDI----------GDISIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YINVG-NIII 84 (332)
T ss_pred CEEEeccccCCCcCh----------hhcccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-HhCCC-cEEE
Confidence 579999999999522 22368999889999999999999999999999999999999997 56786 5777
Q ss_pred cCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 176 CPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 176 ~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++|+|..|...++..|++++.+|.+. +++|.+.+++ .++|+|++||||||||.+++.+++ +.++|+++|
T Consensus 85 ~~P~y~~y~~~~~~~G~~v~~vp~~~-~~~~~~~l~~----~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~ 155 (332)
T PRK06425 85 VEPNFNEYKGYAFTHGIRISALPFNL-INNNPEILNN----YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKG 155 (332)
T ss_pred eCCChHHHHHHHHHcCCeEEEEeCCc-ccCcHHHHhh----cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcC
Confidence 79999999999999999999999754 5667665543 478999999999999999988765 444566654
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=186.41 Aligned_cols=148 Identities=23% Similarity=0.381 Sum_probs=122.3
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-cc------CCCCC-CCcChHHHHHHHHHHc------CCCCCCEEEeCCHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LK------FPYIY-PDPESRRLRAALAKDS------GLESDHILVGCGADELI 159 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~------~~~~Y-p~~g~~~lr~~la~~~------~~~~~~I~vt~Ga~~~l 159 (249)
.+++++|+.|++++++++.+.+++.+ +. ....| |..|..+||+++++++ ++++++|++|+|++++|
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al 112 (409)
T PRK07590 33 EAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDT 112 (409)
T ss_pred CCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHH
Confidence 35689999999999999988888765 22 22578 6678999999999986 57899999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCE-----------EEEecCCC--CCCCCHHHHHHhhccCCceEEEEcC
Q 025730 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAA-----------VVKVPRKS--DFSLNVELIADAVEREKPKCIFLTS 226 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~-----------v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~ 226 (249)
.+++ .++.|||+|++++|+|..|...++..|.+ ++.++.+. ++.+|++ +.++|+|++||
T Consensus 113 ~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-------~~~~k~i~l~n 184 (409)
T PRK07590 113 GNIL-DIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP-------EEKVDIIYLCF 184 (409)
T ss_pred HHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCc-------ccCceEEEEeC
Confidence 9875 46789999999999999999999999987 88888653 3444422 25799999999
Q ss_pred CCCccccCCChHHH--HHHHhhhhC
Q 025730 227 PNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 227 PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
||||||.+++.+++ +.++|++||
T Consensus 185 P~NPTG~~~s~~~~~~l~~~a~~~~ 209 (409)
T PRK07590 185 PNNPTGTVLTKEQLKAWVDYAKENG 209 (409)
T ss_pred CCCCcCCcCCHHHHHHHHHHHHHcC
Confidence 99999999998855 556788765
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=181.94 Aligned_cols=163 Identities=26% Similarity=0.419 Sum_probs=137.3
Q ss_pred HHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCC-CcChHHHHHHHHHHc------CCCCCCEEEeCCHH
Q 025730 86 LSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYP-DPESRRLRAALAKDS------GLESDHILVGCGAD 156 (249)
Q Consensus 86 ~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp-~~g~~~lr~~la~~~------~~~~~~I~vt~Ga~ 156 (249)
++........++++|+.|++++++++.+.+++.+ +. ....|+ ..|..+||+++++++ ++++++|++|+|++
T Consensus 22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~ 101 (393)
T PRK05764 22 KAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAK 101 (393)
T ss_pred HHHHHHhccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcH
Confidence 3333333346789999999999988999888875 32 235684 467899999999997 46788999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 157 ~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
+++.+++..++++||.|++++|+|..|...++..|++++.++.+ .++.+|++++++.++ +++++|+++|||||||.+
T Consensus 102 ~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~p~NPtG~~ 180 (393)
T PRK05764 102 QALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT-PKTKALILNSPSNPTGAV 180 (393)
T ss_pred HHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC-ccceEEEEECCCCCCCcc
Confidence 99999999999999999999999999999999999999999964 357899999999997 689999999999999999
Q ss_pred CChH--HHHHHHhhhhC
Q 025730 235 SWTS--SWIWGISSEHN 249 (249)
Q Consensus 235 ~~~~--e~i~~i~~~~~ 249 (249)
++.+ +.+.++|++||
T Consensus 181 ~~~~~~~~l~~~a~~~~ 197 (393)
T PRK05764 181 YSPEELEAIADVAVEHD 197 (393)
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 8866 44677788775
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=181.20 Aligned_cols=162 Identities=33% Similarity=0.509 Sum_probs=130.8
Q ss_pred HHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHHcCCC
Q 025730 66 FIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145 (249)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~~~~~ 145 (249)
++++.+..+.+|...... .....++++.|++++++++.. .....+||+++..+||+++|++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ne~~~~~~~~~------~~~~~~Y~~~~~~~lr~~ia~~~~~~ 75 (364)
T PRK04781 11 LVREDLRAFAGYSSARSS---------ALQGDVWLNANESAWANPADP------DASTRRYPDPQPPGLRSALAALYGCA 75 (364)
T ss_pred HhhHHhhcCCCCCCCCcc---------ccCCCEEeeCCCCCCCCChhh------cchhccCCCCCHHHHHHHHHHHhCcC
Confidence 345666767776432210 112468999999999887642 12236799888899999999999999
Q ss_pred CCCEEEeCCHHHHHHHHHHHhcCCC-CeEEEcCCCChhHHHHHHHCCCEEEEecCC---CCCCCCHHHHHHhhccCCceE
Q 025730 146 SDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTMYEFDAAVNGAAVVKVPRK---SDFSLNVELIADAVEREKPKC 221 (249)
Q Consensus 146 ~~~I~vt~Ga~~~l~~~~~~~~~pG-d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~---~~~~id~e~l~~~i~~~~~k~ 221 (249)
+++|++|+|++++|.+++++++.+| |+|++++|+|..|...++..|++++.++.+ +++.+|++++++.+.+.++++
T Consensus 76 ~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~l 155 (364)
T PRK04781 76 PEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKL 155 (364)
T ss_pred hHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeE
Confidence 9999999999999999999999999 799999999999999999999999999963 246689999877654478999
Q ss_pred EEEcCCCCccccCCChHHHHH
Q 025730 222 IFLTSPNNPDGRFSWTSSWIW 242 (249)
Q Consensus 222 i~l~~PnNPTG~~~~~~e~i~ 242 (249)
|++||||||||.+++.+++.+
T Consensus 156 v~l~~p~NPTG~~~~~~~~~~ 176 (364)
T PRK04781 156 VFLCSPSNPAGSAIALDQIER 176 (364)
T ss_pred EEEcCCCCCCCCCcCHHHHHH
Confidence 999999999999987765543
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-23 Score=192.45 Aligned_cols=157 Identities=25% Similarity=0.402 Sum_probs=126.0
Q ss_pred CCCCeeeccCCCCCC--CC-CHHHHHHHHh----c------cCCCCCCC-cChHHHHHHHHHHcC--------CCCCCEE
Q 025730 93 KPEDIVKIDANENPY--GP-PPEVREALGQ----L------KFPYIYPD-PESRRLRAALAKDSG--------LESDHIL 150 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~--~~-p~~v~~al~~----~------~~~~~Yp~-~g~~~lr~~la~~~~--------~~~~~I~ 150 (249)
.+..+|+|+.+||++ +. ++.+.+.... . .....|++ .|.++||+++|++++ +++++|+
T Consensus 44 np~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Iv 123 (496)
T PLN02376 44 NPHGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVV 123 (496)
T ss_pred CCCceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEE
Confidence 345789999999988 43 4555544321 0 11133533 478999999999974 6899999
Q ss_pred EeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHH-HCCCEEEEecCC--CCCCCCHHHHHHhhc-----cCCceEE
Q 025730 151 VGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAA-VNGAAVVKVPRK--SDFSLNVELIADAVE-----REKPKCI 222 (249)
Q Consensus 151 vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~-~~G~~v~~v~~~--~~~~id~e~l~~~i~-----~~~~k~i 222 (249)
+|+|++++|.+++.++++|||.|++++|+|+.|...+. ..|++++.|+.+ ++|++|+++++++++ ..++|+|
T Consensus 124 it~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l 203 (496)
T PLN02376 124 MSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGL 203 (496)
T ss_pred EccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEE
Confidence 99999999999999999999999999999999998777 489999999973 568999999987642 1478999
Q ss_pred EEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 223 FLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 223 ~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++||||||||.+++.+++ +..+|++||
T Consensus 204 ~l~nP~NPTG~~~s~e~l~~L~~~a~~~~ 232 (496)
T PLN02376 204 ILTNPSNPLGTMLDKDTLTNLVRFVTRKN 232 (496)
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 999999999999998865 556777764
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=188.27 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=129.3
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-cChHHHHHHHHHHcC--CC-CCCEEEeCCHHHHHHHHHHHhcCC
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-PESRRLRAALAKDSG--LE-SDHILVGCGADELIDLIMRCVLDP 169 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-~g~~~lr~~la~~~~--~~-~~~I~vt~Ga~~~l~~~~~~~~~p 169 (249)
..+++|+.|.++.++++.+.+++.+ ......|++ .|..+||++++++++ +. +++|++|+|++++|.++++++++|
T Consensus 85 ~~~i~L~~g~p~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~p 164 (431)
T PRK15481 85 TPLHDLAGGNPDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLP 164 (431)
T ss_pred chhhhhhcCCCChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCC
Confidence 3468999998887776777787776 333357876 467999999999986 33 469999999999999999999999
Q ss_pred CCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEc-CCCCccccCCChHH--HHHHHhh
Q 025730 170 GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLT-SPNNPDGRFSWTSS--WIWGISS 246 (249)
Q Consensus 170 Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~-~PnNPTG~~~~~~e--~i~~i~~ 246 (249)
||.|++++|+|..|...++..|++++.++.+++ ++|+++++++++ .++|+++++ |||||||.+++.++ .+.++|+
T Consensus 165 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-g~~~~~l~~~~~-~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~ 242 (431)
T PRK15481 165 GDSVAVEDPCFLSSINMLRYAGFSASPVSVDAE-GMQPEKLERALA-QGARAVILTPRAHNPTGCSLSARRAAALRNLLA 242 (431)
T ss_pred CCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCC-CCCHHHHHHHHh-cCCCEEEECCCCCCCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999998544 699999999997 579999998 99999999998874 4666777
Q ss_pred hh
Q 025730 247 EH 248 (249)
Q Consensus 247 ~~ 248 (249)
++
T Consensus 243 ~~ 244 (431)
T PRK15481 243 RY 244 (431)
T ss_pred hc
Confidence 76
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=181.76 Aligned_cols=154 Identities=23% Similarity=0.350 Sum_probs=133.0
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-c-cCCCCCCC-cChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-L-KFPYIYPD-PESRRLRAALAKDS----G--LESD-HILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~-~~~~~Yp~-~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~~~~ 164 (249)
.++|+|+.|.++.+.|+.+.+++.+ + ....+|++ .|..+||+++++++ | ++++ +|++|+|+++++.+++.
T Consensus 26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 105 (387)
T PRK08912 26 HGAINLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALL 105 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHH
Confidence 4679999999998878888877665 3 23367965 57899999999986 3 5677 99999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
.++++||+|++++|+|..|...++..|++++.++.+ +++++|++++++.+. .++|+|+++|||||||.+++.+++ +
T Consensus 106 ~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~NPtG~~~s~~~~~~i 184 (387)
T PRK08912 106 ALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS-PRTKAVLLNNPLNPAGKVFPREELALL 184 (387)
T ss_pred HhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhC-ccceEEEEeCCCCCcCcccCHHHHHHH
Confidence 999999999999999999999999999999999974 468999999999987 689999999999999999987754 6
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|++||
T Consensus 185 ~~~~~~~~ 192 (387)
T PRK08912 185 AEFCQRHD 192 (387)
T ss_pred HHHHHHCC
Confidence 67788765
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=179.97 Aligned_cols=140 Identities=28% Similarity=0.402 Sum_probs=120.2
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCCcChHHHHHHHHHHcC---CCCCCEEEeCCHHHHHHHHHHHhc
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPDPESRRLRAALAKDSG---LESDHILVGCGADELIDLIMRCVL 167 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~~g~~~lr~~la~~~~---~~~~~I~vt~Ga~~~l~~~~~~~~ 167 (249)
+.++|+|+.|+|++++|+.+++++.+ +. ....||+++..+||++++++++ +++++|++|+|++++|.++++++
T Consensus 18 ~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~- 96 (335)
T PRK14808 18 KRDRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF- 96 (335)
T ss_pred CCceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh-
Confidence 45789999999999999999999875 32 2255887889999999999998 88999999999999999999977
Q ss_pred CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHH
Q 025730 168 DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWG 243 (249)
Q Consensus 168 ~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~ 243 (249)
|.|++++|+|..|...++..|++++.++.++++.++... + .++++++++|||||||.+++.+++.+.
T Consensus 97 ---d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~----~--~~~~~i~i~nP~NPTG~~~s~~~l~~l 163 (335)
T PRK14808 97 ---DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVN----V--GEGDVVFIPNPNNPTGHVFEREEIERI 163 (335)
T ss_pred ---CcEEECCCCHHHHHHHHHHcCCeEEEecCCCcCCCChhH----c--cCCCEEEEeCCCCCCCCCcCHHHHHHH
Confidence 789999999999999999999999999987777665432 2 356899999999999999987766443
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=180.96 Aligned_cols=154 Identities=27% Similarity=0.386 Sum_probs=131.9
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-cChHHHHHHHHHHc-----CCCCCCEEEeCCHHHHHHHHHHHhc
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-PESRRLRAALAKDS-----GLESDHILVGCGADELIDLIMRCVL 167 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-~g~~~lr~~la~~~-----~~~~~~I~vt~Ga~~~l~~~~~~~~ 167 (249)
.++++|+.|++++++++.+.+++.+ ......|+. .|..+||+++++++ ++++++|++|+|+++++.+++..++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~ 109 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAIC 109 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhc
Confidence 4689999999999999999999876 333467854 58999999999997 4788999999999999999999999
Q ss_pred CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCC-CHHHHHHhhccCCceEEEEcCCCCccccCCChHH--HHH
Q 025730 168 DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSL-NVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS--WIW 242 (249)
Q Consensus 168 ~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~i-d~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e--~i~ 242 (249)
++||+|++++|+|..|...++..|++++.++.+ .++.. |+++++++++ .++++|+++|||||||.+++.++ .+.
T Consensus 110 ~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~i~ 188 (397)
T PRK07568 110 DPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT-PKTKAILISNPGNPTGVVYTKEELEMLA 188 (397)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC-ccceEEEEECCCCCCCccCCHHHHHHHH
Confidence 999999999999999998889999999999964 33443 6899999987 68999999999999999988764 467
Q ss_pred HHhhhhC
Q 025730 243 GISSEHN 249 (249)
Q Consensus 243 ~i~~~~~ 249 (249)
++|+++|
T Consensus 189 ~~~~~~~ 195 (397)
T PRK07568 189 EIAKKHD 195 (397)
T ss_pred HHHHHCC
Confidence 7888764
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=180.82 Aligned_cols=154 Identities=27% Similarity=0.408 Sum_probs=132.6
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCC-CcChHHHHHHHHHHc----CC--C-CCCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYP-DPESRRLRAALAKDS----GL--E-SDHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp-~~g~~~lr~~la~~~----~~--~-~~~I~vt~Ga~~~l~~~~ 163 (249)
.++++|+.|++++++++.+.+++.+ +. ....|+ ..|..++|+++++++ |+ + +++|++|+|+++++..++
T Consensus 27 ~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~ 106 (389)
T PRK05957 27 PGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAI 106 (389)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHH
Confidence 4579999999999999999999875 22 224684 467888888888775 65 3 678999999999999999
Q ss_pred HHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 164 RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 164 ~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
..++++||+|++++|+|..+...++..|++++.++.++++++|+++++++++ .++|+|+++|||||||.+++.+++ +
T Consensus 107 ~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~klv~~~~p~NPtG~~~~~~~~~~i 185 (389)
T PRK05957 107 LAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAIT-PKTRAIVTISPNNPTGVVYPEALLRAV 185 (389)
T ss_pred HHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcC-cCceEEEEeCCCCCCCcCcCHHHHHHH
Confidence 9999999999999999999988888899999999987788999999999997 689999999999999999987644 6
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
..+|+++|
T Consensus 186 ~~~a~~~~ 193 (389)
T PRK05957 186 NQICAEHG 193 (389)
T ss_pred HHHHHHcC
Confidence 67888875
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=180.15 Aligned_cols=155 Identities=27% Similarity=0.404 Sum_probs=132.1
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCC-CCcChHHHHHHHHHHc----CC--C-CCCEEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF-PYIY-PDPESRRLRAALAKDS----GL--E-SDHILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Y-p~~g~~~lr~~la~~~----~~--~-~~~I~vt~Ga~~~l~~~~~ 164 (249)
+++|+|+.|++++++++.+.+++.+ +.. ...| |..|.++||+++++++ ++ + +++|++|+|+++++.+++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~ 109 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLT 109 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 5689999999999999988888875 322 2468 4567999999999987 33 3 4789999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhcc--CCceEEEEcCCCCccccCCChHHH-
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVER--EKPKCIFLTSPNNPDGRFSWTSSW- 240 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~e~- 240 (249)
.++++||+|++++|+|..|...++..|++++.++.+. ++.+|++++++++++ .++++|+++|||||||.+++.+++
T Consensus 110 ~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~ 189 (391)
T PRK07309 110 AILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIK 189 (391)
T ss_pred HhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHH
Confidence 9999999999999999999999999999999999644 478999999999863 368999999999999999987644
Q ss_pred -HHHHhhhhC
Q 025730 241 -IWGISSEHN 249 (249)
Q Consensus 241 -i~~i~~~~~ 249 (249)
+.++|++||
T Consensus 190 ~l~~~~~~~~ 199 (391)
T PRK07309 190 ALADVLKKYD 199 (391)
T ss_pred HHHHHHHHcC
Confidence 667888875
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=181.61 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=119.6
Q ss_pred CCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHHcCCC-CCCEEEeCC
Q 025730 76 PYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE-SDHILVGCG 154 (249)
Q Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~~~~~-~~~I~vt~G 154 (249)
+..++..+..++..+|.++.++|+|+.|+||+++|+..... . ...+||+.. .+||+++++++|+. +++|++|+|
T Consensus 5 ~~~hg~~~~~~~~~~~~~~~~~i~ls~Nenp~~~~~~~~~~-~---~~~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~G 79 (339)
T PRK06959 5 PIAHGGNLHEAARRYGIPYDAWLDLSTGINPHGYPVPPVPA-D---AWRRLPEDD-DGLAACAARYYGAPDAAHVLPVAG 79 (339)
T ss_pred CcCCCchHHHHHHHcCCChhhhceeccCCCCCCCCCCCCCH-H---HHHhCCCch-HHHHHHHHHHhCCCCcccEEECcC
Confidence 44567777777888887777889999999999887322211 1 125699876 89999999999996 589999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 155 ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 155 a~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
++++|.++.. ++++|| |++++|+|..|...++..|++++.++.+. +.+ . ..++++++||||||||.+
T Consensus 80 s~e~i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~------~~~----~-~~~~~v~l~nPnNPTG~~ 146 (339)
T PRK06959 80 SQAAIRALPA-LLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA------DTL----P-AALTHLIVVNPNNPTAER 146 (339)
T ss_pred HHHHHHHHHH-hcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc------hhc----c-ccCCEEEEeCCCCCCCCC
Confidence 9999998765 578876 88999999999999999999999998643 222 2 346789999999999999
Q ss_pred CChHHHHH
Q 025730 235 SWTSSWIW 242 (249)
Q Consensus 235 ~~~~e~i~ 242 (249)
++.+++.+
T Consensus 147 ~s~~~l~~ 154 (339)
T PRK06959 147 LPAARLLR 154 (339)
T ss_pred CCHHHHHH
Confidence 98887644
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=179.46 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=125.2
Q ss_pred CCeeeccCCC---CCCCCC--HHHHHHHHhc-c--CCCCC-CCcChHHHHHHHHHHc---C---CCCCCE--EEeCCHHH
Q 025730 95 EDIVKIDANE---NPYGPP--PEVREALGQL-K--FPYIY-PDPESRRLRAALAKDS---G---LESDHI--LVGCGADE 157 (249)
Q Consensus 95 ~~~I~L~~~~---~~~~~p--~~v~~al~~~-~--~~~~Y-p~~g~~~lr~~la~~~---~---~~~~~I--~vt~Ga~~ 157 (249)
+++|+|+.|. +++.+| +.+.+++.+. . ....| +..|.++||+++++++ + +++++| ++|+|+++
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~ 105 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTG 105 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccH
Confidence 4679999995 334444 6788887763 2 22468 4568999999999997 2 367877 99999999
Q ss_pred HHHHHHHHh--cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhcc--CCceEEEEcCCCCcc
Q 025730 158 LIDLIMRCV--LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVER--EKPKCIFLTSPNNPD 231 (249)
Q Consensus 158 ~l~~~~~~~--~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~--~~~k~i~l~~PnNPT 231 (249)
+|.++++.+ ++|||+|++++|+|..|...++..|++++.++. .+++++|++.+++++++ .++++++++||||||
T Consensus 106 al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPT 185 (396)
T PRK09257 106 ALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPT 185 (396)
T ss_pred HHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCC
Confidence 999998765 589999999999999999999999999999996 34689999999998763 234566668999999
Q ss_pred ccCCChHHH--HHHHhhhhC
Q 025730 232 GRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~e~--i~~i~~~~~ 249 (249)
|.+++.+++ +.++|++||
T Consensus 186 G~~~s~~~~~~l~~~a~~~~ 205 (396)
T PRK09257 186 GADLTPEQWDELAELLKERG 205 (396)
T ss_pred CCCCCHHHHHHHHHHHHhCC
Confidence 999999865 567888775
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-22 Score=177.52 Aligned_cols=145 Identities=26% Similarity=0.371 Sum_probs=124.3
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCC
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGD 171 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd 171 (249)
..++++|+.|+|++++|+.+++++.+ +.....||+ .|..+||+++++++++++++|++|+|++++|.++++ +++ +
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--l~~-~ 97 (349)
T PRK07908 21 GPGLLDFAVNVRHDTPPEWLRERLAARLGDLAAYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR--LRP-R 97 (349)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhhHhhcCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh--cCC-C
Confidence 46789999999999999999999886 434467976 488999999999999999999999999999999998 567 4
Q ss_pred eEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh
Q 025730 172 KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 172 ~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
.+++..|+|..+...++..|.+++.++.++++++|++.+ + .++++++++|||||||.+++.+++ ..++++
T Consensus 98 ~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~~~l----~-~~~~~i~l~np~NPTG~~~~~~~l-~~l~~~ 167 (349)
T PRK07908 98 RAAVVHPSFTEPEAALRAAGIPVHRVVLDPPFRLDPAAV----P-DDADLVVIGNPTNPTSVLHPAEQL-LALRRP 167 (349)
T ss_pred eEEEeCCCChHHHHHHHHcCCEEEeeccCcccCcChhHh----c-cCCCEEEEcCCCCCCCCCcCHHHH-HHHHhc
Confidence 677789999999999999999999999876688999855 3 578999999999999999987654 455543
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-22 Score=184.02 Aligned_cols=149 Identities=21% Similarity=0.351 Sum_probs=122.8
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-cc------CCCCC-CCcChHHHHHHHHHHc---CCCCCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LK------FPYIY-PDPESRRLRAALAKDS---GLESDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~------~~~~Y-p~~g~~~lr~~la~~~---~~~~~~I~vt~Ga~~~l~~~ 162 (249)
..++|+|+.|++++++++.+.+++.. +. ....| |..|.++||+++|+++ ++++++|++|+|++++|.++
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l 111 (402)
T TIGR03542 32 SADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRL 111 (402)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHH
Confidence 46789999999999999988888765 22 12458 6779999999999986 68899999999999999987
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCC-----------EEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCC
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGA-----------AVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNN 229 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~-----------~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnN 229 (249)
+ .++.+||+|++++|+|..|...++..|+ +++.++.+. ++.+|++. ..++|+|++|||||
T Consensus 112 ~-~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~i~l~nP~N 184 (402)
T TIGR03542 112 Q-SLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE------EPKIDIIYLCSPNN 184 (402)
T ss_pred H-HhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc------cCCceEEEEeCCCC
Confidence 5 4668999999999999999999999999 999998643 34444321 15789999999999
Q ss_pred ccccCCChHHH--HHHHhhhhC
Q 025730 230 PDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 230 PTG~~~~~~e~--i~~i~~~~~ 249 (249)
|||.+++.+++ +.++|++||
T Consensus 185 PTG~~~s~~~~~~l~~~a~~~~ 206 (402)
T TIGR03542 185 PTGTVLTKEQLKELVDYANEHG 206 (402)
T ss_pred CCCccCCHHHHHHHHHHHHHcC
Confidence 99999998755 556777764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=178.18 Aligned_cols=152 Identities=28% Similarity=0.548 Sum_probs=132.5
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-cc----CCCCC-CCcChHHHHHHHHHHcC------CCCCCEEEeCCHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LK----FPYIY-PDPESRRLRAALAKDSG------LESDHILVGCGADELIDLI 162 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~----~~~~Y-p~~g~~~lr~~la~~~~------~~~~~I~vt~Ga~~~l~~~ 162 (249)
+++++|+.+.+++++++.+.+++.+ .. ...+| +..|..++|++++++++ +++++|++|+|++++|..+
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~ 112 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVA 112 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHH
Confidence 5689999998888888888888865 22 13678 55789999999999973 6789999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCC-CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH-
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD-FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW- 240 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~-~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~- 240 (249)
++.++++||.|++++|+|..|...++..|++++.++.+++ +++|+++++++++ .++++|++++||||||.+++.+++
T Consensus 113 ~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~-~~~~~v~~~~p~NPtG~~~~~~~~~ 191 (394)
T PRK06836 113 LKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAIT-PKTKAVIINSPNNPTGVVYSEETLK 191 (394)
T ss_pred HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcC-cCceEEEEeCCCCCCCcCCCHHHHH
Confidence 9999999999999999999999999999999999997655 7899999999997 689999999999999999988755
Q ss_pred -HHHHhhh
Q 025730 241 -IWGISSE 247 (249)
Q Consensus 241 -i~~i~~~ 247 (249)
+.++|++
T Consensus 192 ~l~~la~~ 199 (394)
T PRK06836 192 ALAALLEE 199 (394)
T ss_pred HHHHHHHH
Confidence 5567776
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=175.45 Aligned_cols=154 Identities=24% Similarity=0.453 Sum_probs=132.7
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCC-CcChHHHHHHHHHHc----CC--CCC-CEEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYP-DPESRRLRAALAKDS----GL--ESD-HILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp-~~g~~~lr~~la~~~----~~--~~~-~I~vt~Ga~~~l~~~~~ 164 (249)
.++|+|+.|++++++++.+.+++.+ +. ...+|+ ..|..+||+++++++ ++ +++ +|++|+|++++|.+++.
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~ 109 (386)
T PRK09082 30 HGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAIL 109 (386)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHH
Confidence 4679999999999888888888876 32 236784 468899999999874 54 344 79999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
.++++||+|++++|+|..|...++..|++++.++.+ +++.+|+++++++++ .++++|++++||||||.+++.+++ +
T Consensus 110 ~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~~p~NPtG~~~~~~~~~~i 188 (386)
T PRK09082 110 ALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAIS-PRTRLIILNTPHNPSGTVWSAADMRAL 188 (386)
T ss_pred HHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcC-ccceEEEEeCCCCCCCcCCCHHHHHHH
Confidence 999999999999999999999999999999999974 468899999999997 689999999999999999988755 6
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|++||
T Consensus 189 ~~~a~~~~ 196 (386)
T PRK09082 189 WQLIAGTD 196 (386)
T ss_pred HHHHHHCC
Confidence 77888875
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=177.08 Aligned_cols=154 Identities=25% Similarity=0.447 Sum_probs=133.2
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCC-CcChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYP-DPESRRLRAALAKDS----G--LESD-HILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp-~~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~~~~ 164 (249)
+++|+|+.+.+.+++++.+.+++.+ +. ....|+ ..|..+||+++++++ | ++++ +|++|+|+++++.+++.
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~ 107 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFR 107 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 5679999999988888888888876 32 236784 578999999999997 4 4677 99999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
.++++||+|++++|+|..|...++..|++++.++.+ +++.+|++++++.++ .++++|+++|||||||.+++.+++ +
T Consensus 108 ~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~i~i~~p~NPtG~~~s~~~~~~l 186 (387)
T PRK07683 108 TILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAIT-EKTRCVVLPYPSNPTGVTLSKEELQDI 186 (387)
T ss_pred HhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcC-cCceEEEEeCCCCCCCcCCCHHHHHHH
Confidence 999999999999999999999999999999999964 457789999999987 689999999999999999987754 6
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
..+|+++|
T Consensus 187 ~~~~~~~~ 194 (387)
T PRK07683 187 ADVLKDKN 194 (387)
T ss_pred HHHHHHcC
Confidence 67787764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=193.81 Aligned_cols=181 Identities=18% Similarity=0.294 Sum_probs=141.6
Q ss_pred hccCCCChHHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCC-CCCcC-hHHH
Q 025730 58 QRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI-YPDPE-SRRL 134 (249)
Q Consensus 58 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~-Yp~~g-~~~l 134 (249)
...+.......+.+.....+.. +..+.++|+|+.|+|++++|+.+++++.+ +..... ++.+. ...+
T Consensus 671 ~~~~~~~~~~~~~l~~~~~~~~-----------~~~g~~vI~LsinE~d~ppPp~V~eAi~eal~~~~~s~g~pdlr~aL 739 (1082)
T PLN02672 671 SKFIGFSSSARSALKEAELSVS-----------GSQESSLIHMDVDESFLPVPSAVKASIFESFVRQNISESETDPRPSI 739 (1082)
T ss_pred HhhhCCCchhHHHHHhcccCCc-----------ccCCCCEEEEeCCCCCCCCCHHHHHHHHHHHhhcCCCCCChHHHHHH
Confidence 4556667777777766555532 22346789999999999999999999876 322222 12211 3455
Q ss_pred HHHHHHHcCCCCC---CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHH
Q 025730 135 RAALAKDSGLESD---HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVEL 209 (249)
Q Consensus 135 r~~la~~~~~~~~---~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~ 209 (249)
++.+++++|++.+ +|++|+|+++++..+++++++|||.|+++.|+|+.|...++..|++++.++.+ ++|.+|++.
T Consensus 740 a~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~ 819 (1082)
T PLN02672 740 LQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKT 819 (1082)
T ss_pred HHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHH
Confidence 5666666677543 89999999999999999999999999999999999999999999999999964 468899999
Q ss_pred HHHhhccCCceEEEEcCCC-CccccCCChHHH--HHHHhhhhC
Q 025730 210 IADAVEREKPKCIFLTSPN-NPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 210 l~~~i~~~~~k~i~l~~Pn-NPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+++++++.+.++|++|||| ||||.+++.+++ +..+|++||
T Consensus 820 Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~d 862 (1082)
T PLN02672 820 LASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYG 862 (1082)
T ss_pred HHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcC
Confidence 9999974345689999997 999999988865 566788765
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=176.69 Aligned_cols=154 Identities=23% Similarity=0.363 Sum_probs=131.9
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCCC-cChHHHHHHHHHHc----CC--CCCCEEEeCCHHHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYPD-PESRRLRAALAKDS----GL--ESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp~-~g~~~lr~~la~~~----~~--~~~~I~vt~Ga~~~l~~~~~ 164 (249)
+.++++|+.|.+++++++.+.+++.+ +. ...+|++ .|.++||+++++++ |+ ++++|++|+|+++++.+++.
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~ 111 (402)
T PRK06107 32 GRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALM 111 (402)
T ss_pred cCCEEEcCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHH
Confidence 45789999999999989998888876 32 2357865 58899999999875 44 67899999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW-- 240 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~-- 240 (249)
+++++||+|++++|+|..|...+...|++++.++.+ +++.+|+++++++++ .++++|+++|||||||.+++.+++
T Consensus 112 ~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~NPtG~~~s~~~~~~ 190 (402)
T PRK06107 112 ATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAIT-PRTRWLILNAPSNPTGAVYSRAELRA 190 (402)
T ss_pred HhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC-cCceEEEEECCCCCCCcCcCHHHHHH
Confidence 999999999999999999998888899999888863 457799999999987 689999999999999999887754
Q ss_pred HHHHhhhh
Q 025730 241 IWGISSEH 248 (249)
Q Consensus 241 i~~i~~~~ 248 (249)
+.++|++|
T Consensus 191 l~~~a~~~ 198 (402)
T PRK06107 191 LADVLLRH 198 (402)
T ss_pred HHHHHHHc
Confidence 66678775
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=171.45 Aligned_cols=154 Identities=21% Similarity=0.342 Sum_probs=135.8
Q ss_pred CCeeeccCCCCC----CCCCHHHHHHHHh-cc--CCCCC-CCcChHHHHHHHHHHc------CCCCCCEEEeCCHHHHHH
Q 025730 95 EDIVKIDANENP----YGPPPEVREALGQ-LK--FPYIY-PDPESRRLRAALAKDS------GLESDHILVGCGADELID 160 (249)
Q Consensus 95 ~~~I~L~~~~~~----~~~p~~v~~al~~-~~--~~~~Y-p~~g~~~lr~~la~~~------~~~~~~I~vt~Ga~~~l~ 160 (249)
+.+|.|+.|+|. |.+.+++.+|+.+ +. ..+.| |..|....|+++|+|+ .+++++|++|.|..++|+
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe 140 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIE 140 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHH
Confidence 478999999875 4567777788765 33 34789 7889999999999996 367899999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEec--CCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 161 LIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 161 ~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~--~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
+++.++.+||..|++|.|+|+.|...+...|.++.+++ .+.+|.+|++.+++.++ ++|.++++.|||||+|.+|+.+
T Consensus 141 ~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D-ENT~AivviNP~NPcGnVys~~ 219 (447)
T KOG0259|consen 141 LAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD-ENTVAIVVINPNNPCGNVYSED 219 (447)
T ss_pred HHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhc-cCeeEEEEeCCCCCCcccccHH
Confidence 99999999999999999999999999999999999998 46789999999999998 7999999999999999999888
Q ss_pred H--HHHHHhhhhC
Q 025730 239 S--WIWGISSEHN 249 (249)
Q Consensus 239 e--~i~~i~~~~~ 249 (249)
. .+.++|+|++
T Consensus 220 HL~kiae~A~klg 232 (447)
T KOG0259|consen 220 HLKKIAETAKKLG 232 (447)
T ss_pred HHHHHHHHHHHhC
Confidence 4 4777888764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=184.84 Aligned_cols=154 Identities=17% Similarity=0.321 Sum_probs=124.3
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHhcc-----CCCCC-CCcChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQLK-----FPYIY-PDPESRRLRAALAKDS----G--LESDHILVGCGADELIDLI 162 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~~~-----~~~~Y-p~~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~~ 162 (249)
+++|+|..+.+.|+. ..+.++...+. ....| +..|.++||+++|+++ | +++++|++|+|++++|.++
T Consensus 129 p~~i~~~~~~~~fp~-~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~ 207 (534)
T PLN02231 129 PSLLDKSETHGLFSA-DAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMM 207 (534)
T ss_pred CccCCCCCccccCCH-HHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHH
Confidence 456777765555643 33333333221 23568 4568999999999987 3 5789999999999999999
Q ss_pred HHHhcC-CCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccC-----CceEEEEcCCCCccccC
Q 025730 163 MRCVLD-PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 163 ~~~~~~-pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~ 234 (249)
++.++. +||.|+++.|+|..|...++..|++++.+++++ +|++|+++|++++++. ++|+|+++|||||||.+
T Consensus 208 ~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~v 287 (534)
T PLN02231 208 MQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQV 287 (534)
T ss_pred HHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcC
Confidence 999984 799999999999999999999999999999653 4899999999988631 68999999999999999
Q ss_pred CChHHH--HHHHhhhhC
Q 025730 235 SWTSSW--IWGISSEHN 249 (249)
Q Consensus 235 ~~~~e~--i~~i~~~~~ 249 (249)
++.+++ +.++|++||
T Consensus 288 ls~e~l~~Iv~~a~~~~ 304 (534)
T PLN02231 288 LAEENQRDIVEFCKQEG 304 (534)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 998855 677888875
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=176.33 Aligned_cols=156 Identities=22% Similarity=0.374 Sum_probs=133.4
Q ss_pred CCCCeeeccCCCCC----CCCCHHHHHHHHh-cc--CCCCC-CCcChHHHHHHHHHHcC------CCCCCEEEeCCHHHH
Q 025730 93 KPEDIVKIDANENP----YGPPPEVREALGQ-LK--FPYIY-PDPESRRLRAALAKDSG------LESDHILVGCGADEL 158 (249)
Q Consensus 93 ~~~~~I~L~~~~~~----~~~p~~v~~al~~-~~--~~~~Y-p~~g~~~lr~~la~~~~------~~~~~I~vt~Ga~~~ 158 (249)
++.++|+|+.|++. +++++.+.+++.+ +. ....| +..|..++|++++++++ +++++|++|+|++++
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~a 108 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQA 108 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHH
Confidence 35689999999874 7788889888875 32 22568 56789999999999986 367899999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
+.+++.+++++||+|+++.|+|..|...++..|++++.++. ++++++|++.++++++ .++++++++|||||||.+++
T Consensus 109 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~i~~p~NPtG~~~~ 187 (403)
T TIGR01265 109 IEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALAD-EKTVAIVVINPSNPCGSVFS 187 (403)
T ss_pred HHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhC-cCccEEEEecCCCCCCCCCC
Confidence 99999999999999999999999999999999999999885 3457899999999887 68999999999999999998
Q ss_pred hHHH--HHHHhhhhC
Q 025730 237 TSSW--IWGISSEHN 249 (249)
Q Consensus 237 ~~e~--i~~i~~~~~ 249 (249)
.+++ +..+|+++|
T Consensus 188 ~~~~~~i~~~a~~~~ 202 (403)
T TIGR01265 188 RDHLQKIAEVARKLG 202 (403)
T ss_pred HHHHHHHHHHHHHCC
Confidence 6644 667788765
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=184.01 Aligned_cols=150 Identities=21% Similarity=0.243 Sum_probs=123.4
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhccCCCCCCC-cChHHHHHHHHHHc------C-C-C--CCCEEEeCCHHHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQLKFPYIYPD-PESRRLRAALAKDS------G-L-E--SDHILVGCGADELIDLIMR 164 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~-~g~~~lr~~la~~~------~-~-~--~~~I~vt~Ga~~~l~~~~~ 164 (249)
++|+|+.|++.+++|+.+.++...+. +..||. .|..+||+++++++ + . . .++|++|+|++++|..++.
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e~~~~~~-~~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~ 179 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYELVDGII-GDNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFD 179 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHh-cCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHH
Confidence 46999999999999999888665553 246965 58999999999843 1 1 2 2489999999999999988
Q ss_pred H-----hcCCCCeEEEcCCCChhHHHHHHHCC--CEEEEecC--CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 165 C-----VLDPGDKIVDCPPTFTMYEFDAAVNG--AAVVKVPR--KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 165 ~-----~~~pGd~Vlv~~P~y~~~~~~~~~~G--~~v~~v~~--~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
+ +++|||+|++++|+|..|...++..| .+++.++. +++|.+|+++++++++ +++|+|+|+|||||||.++
T Consensus 180 aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~-~~tkai~l~nP~NPTG~v~ 258 (527)
T PRK09275 180 SLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRD-PSIKALFLVNPSNPPSVAM 258 (527)
T ss_pred HHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC-CCCCEEEEeCCcCCcCCCC
Confidence 6 68999999999999999999988875 55566653 3468999999999887 7899999999999999999
Q ss_pred ChHHH--HHHHhhh
Q 025730 236 WTSSW--IWGISSE 247 (249)
Q Consensus 236 ~~~e~--i~~i~~~ 247 (249)
+.+++ +..+|++
T Consensus 259 s~e~l~~I~~ia~~ 272 (527)
T PRK09275 259 SDESLEKIADIVNE 272 (527)
T ss_pred CHHHHHHHHHHHHh
Confidence 88855 5567754
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=177.20 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=123.7
Q ss_pred CCeeeccCCCC-CCCCCHH----HHHHHHhc---cCCCCC-CCcChHHHHHHHHHHc---C---CCCCCEE--EeCCHHH
Q 025730 95 EDIVKIDANEN-PYGPPPE----VREALGQL---KFPYIY-PDPESRRLRAALAKDS---G---LESDHIL--VGCGADE 157 (249)
Q Consensus 95 ~~~I~L~~~~~-~~~~p~~----v~~al~~~---~~~~~Y-p~~g~~~lr~~la~~~---~---~~~~~I~--vt~Ga~~ 157 (249)
+++|+|+.|.+ ++.++.. +.+++..+ .....| |..|.++||+++++++ + +++++|+ .|.|+++
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~ 108 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTG 108 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcch
Confidence 57799999986 3555443 34444331 123678 4579999999999986 2 4778888 5899999
Q ss_pred HHHHHHH---HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC-C-CCCCCCHHHHHHhhcc--CCceEEEEcCCCCc
Q 025730 158 LIDLIMR---CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR-K-SDFSLNVELIADAVER--EKPKCIFLTSPNNP 230 (249)
Q Consensus 158 ~l~~~~~---~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~-~-~~~~id~e~l~~~i~~--~~~k~i~l~~PnNP 230 (249)
++.+++. .+++|||+|++++|+|..|...++..|++++.++. + +++++|++.+++++++ .++++++++|||||
T Consensus 109 al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NP 188 (404)
T PTZ00376 109 ALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNP 188 (404)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 9988875 66899999999999999999999999999999997 2 4589999999999853 34677778999999
Q ss_pred cccCCChHHH--HHHHhhhhC
Q 025730 231 DGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~~e~--i~~i~~~~~ 249 (249)
||.+++.+++ +.++|++||
T Consensus 189 TG~~~s~~~~~~l~~~a~~~~ 209 (404)
T PTZ00376 189 TGVDPTEEQWKEIADVMKRKN 209 (404)
T ss_pred CCCCCCHHHHHHHHHHHHhCC
Confidence 9999998865 566888875
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=181.89 Aligned_cols=156 Identities=21% Similarity=0.349 Sum_probs=126.6
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-cc-------------CCCCCCC-cChHHHHHHHHHHcC--------CCCCCE
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LK-------------FPYIYPD-PESRRLRAALAKDSG--------LESDHI 149 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~-------------~~~~Yp~-~g~~~lr~~la~~~~--------~~~~~I 149 (249)
++.++|+|+..||.+ .-+.+.+.+.. .. ....|.+ .|..+||+++|++++ +++++|
T Consensus 45 np~g~i~l~~aeN~l-~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~I 123 (447)
T PLN02607 45 NPSGVIQMGLAENQV-SFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRI 123 (447)
T ss_pred CCCceEEEechhhhh-hHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHe
Confidence 456799999999976 34555555543 11 1133544 488999999999973 678999
Q ss_pred EEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHH-HCCCEEEEecCC--CCCCCCHHHHHHhhcc-----CCceE
Q 025730 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAA-VNGAAVVKVPRK--SDFSLNVELIADAVER-----EKPKC 221 (249)
Q Consensus 150 ~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~-~~G~~v~~v~~~--~~~~id~e~l~~~i~~-----~~~k~ 221 (249)
++|+|+++++++++.++++|||.|+++.|+|+.|...+. ..|++++.|+.+ ++|.+|++++++++++ .++|+
T Consensus 124 vit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~ 203 (447)
T PLN02607 124 VLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRG 203 (447)
T ss_pred EEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeE
Confidence 999999999999999999999999999999999988776 479999999864 4577999999998863 47899
Q ss_pred EEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 222 IFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 222 i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
|++||||||||.+++.+++ +..+|++||
T Consensus 204 lll~nP~NPtG~~~s~e~l~~l~~~~~~~~ 233 (447)
T PLN02607 204 VLITNPSNPLGATVQRSVLEDILDFVVRKN 233 (447)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHCC
Confidence 9999999999999998855 556787765
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=174.13 Aligned_cols=154 Identities=27% Similarity=0.376 Sum_probs=125.5
Q ss_pred HHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCC-cChHHHHHHHHHHc-------CCCCCCEEEeCCHH
Q 025730 85 VLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPD-PESRRLRAALAKDS-------GLESDHILVGCGAD 156 (249)
Q Consensus 85 ~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~-~g~~~lr~~la~~~-------~~~~~~I~vt~Ga~ 156 (249)
..+.+....+.++++|+.|++..++++.+.+++.+......|++ .|..+||+++++++ ++++++|++|+|++
T Consensus 11 ~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~ 90 (357)
T TIGR03539 11 PYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAADAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTK 90 (357)
T ss_pred HHHHHhhhCCCCeEEccCCCCCCCCCHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChH
Confidence 34444445567789999998888888888888876433467875 47899999999997 47789999999999
Q ss_pred HHHHHHHHHh-cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 157 ELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 157 ~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
+++..++..+ +++||.|++++|+|..|...++..|++++.++ |++.+. ..++++|+++|||||||.++
T Consensus 91 ~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~-------~~~~l~----~~~~~~v~~~~p~NPtG~~~ 159 (357)
T TIGR03539 91 ELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD-------DPTELD----PVGPDLIWLNSPGNPTGRVL 159 (357)
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC-------ChhhcC----ccCccEEEEeCCCCCcCccC
Confidence 9999999887 79999999999999999999999999998874 233332 25789999999999999999
Q ss_pred ChHHH--HHHHhhhhC
Q 025730 236 WTSSW--IWGISSEHN 249 (249)
Q Consensus 236 ~~~e~--i~~i~~~~~ 249 (249)
+.+++ +.++|++||
T Consensus 160 ~~~~~~~i~~~a~~~~ 175 (357)
T TIGR03539 160 SVDELRAIVAWARERG 175 (357)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 87754 667888875
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=170.07 Aligned_cols=142 Identities=25% Similarity=0.368 Sum_probs=118.0
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCC
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGD 171 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd 171 (249)
.+.++|+|+.|+|+++ |+.+.+++.+ +.....||. ...||++++++++ ++|++|+|++++|.+++..+ .+||
T Consensus 6 ~~~~~i~l~~~~np~~-p~~~~~a~~~~~~~~~~yp~--~~~l~~~ia~~~~---~~I~vt~G~~~al~~~~~~~-~~gd 78 (311)
T PRK08354 6 REEGLIDFSASVNPYP-PEWLDEMFERAKEISGRYTY--YEWLEEEFSKLFG---EPIVITAGITEALYLIGILA-LRDR 78 (311)
T ss_pred CccceeEecCCCCCCC-CHHHHHHHHHHHHHhhcCCC--hHHHHHHHHHHHC---CCEEECCCHHHHHHHHHHhh-CCCC
Confidence 4567899999999996 5788888865 333457875 5789999999998 47999999999999888644 5899
Q ss_pred eEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 172 KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 172 ~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+|++++|+|..|...++..|++++.++ +|++.+++.++ +++++++||||||||.+++.+++ +..+|+++|
T Consensus 79 ~vlv~~P~y~~~~~~~~~~g~~~~~~~------~d~~~l~~~~~--~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~ 150 (311)
T PRK08354 79 KVIIPRHTYGEYERVARFFAARIIKGP------NDPEKLEELVE--RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRN 150 (311)
T ss_pred eEEEeCCCcHHHHHHHHHcCCEEeecC------CCHHHHHHhhc--CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcC
Confidence 999999999999999999999998763 57899988875 46789999999999999988765 445676654
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-21 Score=170.77 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=117.6
Q ss_pred CCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHH
Q 025730 80 ILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELI 159 (249)
Q Consensus 80 ~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l 159 (249)
+..+...+...|....++|+|+.|++|+++|+..... .. ...||+.. .+||++++++++ +++|++|+|++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~l~~ne~p~~~~~~~~~~-~~---~~~yp~~~-~~Lr~~ia~~~~--~~~I~it~Gs~~al 77 (330)
T PRK05664 5 GGRLRRAAQRYGIPLADWLDLSTGIAPWPWPVPAIPA-DA---WARLPETD-DGLEAAARAYYG--APQLLPVAGSQAAI 77 (330)
T ss_pred CchHHHHHHHcCCCHHHheeecCCcCCCCCCCcccCH-HH---HHhCCCCh-HHHHHHHHHHhC--CCCEEECcCHHHHH
Confidence 4445556666666556789999999999877321111 11 14588754 899999999999 47999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
.+++. +.+||+|++++|+|..|...++..|++++.++.+ +++++++ +++++++||||||||.+++.++
T Consensus 78 ~~~~~--~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~--------~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~ 145 (330)
T PRK05664 78 QALPR--LRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA--------EVEAALD--SLDVLVVVNPNNPTGRRFDPAR 145 (330)
T ss_pred HHHHH--ccCCCEEEEcCCChHHHHHHHHHcCCeEEEechh--------hHhhhhc--CCCEEEEeCCcCCCCCccCHHH
Confidence 99864 5799999999999999999999999999999752 3555553 6789999999999999998886
Q ss_pred HHH--HHhhhhC
Q 025730 240 WIW--GISSEHN 249 (249)
Q Consensus 240 ~i~--~i~~~~~ 249 (249)
+.+ .+|+++|
T Consensus 146 l~~l~~~~~~~~ 157 (330)
T PRK05664 146 LLAWHARLAARG 157 (330)
T ss_pred HHHHHHHHHhcC
Confidence 643 4456553
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.6e-22 Score=165.97 Aligned_cols=171 Identities=55% Similarity=0.896 Sum_probs=151.9
Q ss_pred CCChHHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHH
Q 025730 62 TGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKD 141 (249)
Q Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~ 141 (249)
...++++++..+...|+++..++.....+|+ +++.|+.++++..|+|+. +...+.||+....+++.++++-
T Consensus 11 ~~i~~l~Pyrcarddf~eg~lldane~a~G~---~iv~ld~~e~~ryPdP~q------~efk~~~~d~rnk~ls~a~~~d 81 (375)
T KOG0633|consen 11 MGISFLRPYRCARDDFQEGLLLDANEAALGR---DIVKLDANENPRYPDPEQ------MEFKYVYPDPRNKRLSDALAQD 81 (375)
T ss_pred ccccccChhhhhhhhccccceecchhhhcCC---CceEeccccCCCCcCHHH------cccccccCCcccchhhhhcccC
Confidence 3567788888888889888888888888876 789999999998777754 4455788988889999999998
Q ss_pred cCCCCCCEEEeCCHHHHHHHHHHHhcCCC-CeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-CCc
Q 025730 142 SGLESDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-EKP 219 (249)
Q Consensus 142 ~~~~~~~I~vt~Ga~~~l~~~~~~~~~pG-d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-~~~ 219 (249)
-++.+|+|.++.|++|.|++++++.|.|| ++|++..|+|.+|...+...+++++.+|.+.+|.+|.|++.+.++. .++
T Consensus 82 kpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~i 161 (375)
T KOG0633|consen 82 KPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKI 161 (375)
T ss_pred CCCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccc
Confidence 88999999999999999999999999999 9999999999999999999999999999999999999999999874 479
Q ss_pred eEEEEcCCCCccccCCChHHHH
Q 025730 220 KCIFLTSPNNPDGRFSWTSSWI 241 (249)
Q Consensus 220 k~i~l~~PnNPTG~~~~~~e~i 241 (249)
|++|+|+|+||||..+..+++.
T Consensus 162 K~~F~tSPgNPtg~~ik~~di~ 183 (375)
T KOG0633|consen 162 KCIFLTSPGNPTGSIIKEDDIL 183 (375)
T ss_pred eEEEEcCCCCCCcccccHHHHH
Confidence 9999999999999997655543
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=169.24 Aligned_cols=154 Identities=30% Similarity=0.482 Sum_probs=129.4
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCCC-cChHHHHHHHHHHc----CC--CCC-CEEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYPD-PESRRLRAALAKDS----GL--ESD-HILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp~-~g~~~lr~~la~~~----~~--~~~-~I~vt~Ga~~~l~~~~~ 164 (249)
.++++|+.|.++.+.++.+.+++.+ +. ...+|++ .|..+||+++++++ |+ +++ +|++|+|+++++.+++.
T Consensus 24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 103 (387)
T PRK07777 24 TGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVL 103 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHH
Confidence 4679999999988887777777665 32 2356864 57999999999874 54 455 79999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC---CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH-
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS---DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW- 240 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~---~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~- 240 (249)
+++++||+|+++.|+|..|...++..|.+++.++.++ ++.+|+++++++++ .++++|+++|||||||.+++.+++
T Consensus 104 ~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~~p~NPtG~~~~~~~~~ 182 (387)
T PRK07777 104 GLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVT-PRTRALIVNSPHNPTGTVLTAAELA 182 (387)
T ss_pred HhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcC-cccEEEEEcCCCCCCCccCCHHHHH
Confidence 9999999999999999999999999999999998643 46799999999987 689999999999999999987644
Q ss_pred -HHHHhhhhC
Q 025730 241 -IWGISSEHN 249 (249)
Q Consensus 241 -i~~i~~~~~ 249 (249)
+..+|++||
T Consensus 183 ~l~~~~~~~~ 192 (387)
T PRK07777 183 AIAELAVEHD 192 (387)
T ss_pred HHHHHHHhcC
Confidence 667888764
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=168.97 Aligned_cols=156 Identities=31% Similarity=0.444 Sum_probs=131.6
Q ss_pred CCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHH
Q 025730 79 PILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADEL 158 (249)
Q Consensus 79 ~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~ 158 (249)
++++++..++++|.+.+++++|+.|+|++++| ..+.. .....+||++..++||+++++++++++++|++|+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~ 76 (330)
T TIGR01140 1 HGGNLRRAAARYGIPPEDWLDFSTGINPLGPP--VPPIP--ASAWARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEA 76 (330)
T ss_pred CCccHHHHHHHcCCChhheeEccccCCCCCCC--hhhcc--hHHHhhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHH
Confidence 46788999999999999999999999999876 22211 122367887667999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
+..++.. +.+| +|++++|+|..|...++..|.+++.++ |++.+++.++ ++++|++++||||||.+++.+
T Consensus 77 i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~-------d~~~l~~~~~--~~~~v~i~~p~NPtG~~~~~~ 145 (330)
T TIGR01140 77 IYLLPRL-LAPG-RVLVLAPTYSEYARAWRAAGHEVVELP-------DLDRLPAALE--ELDVLVLCNPNNPTGRLIPPE 145 (330)
T ss_pred HHHHHHH-hCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC-------CHHHHHhhcc--cCCEEEEeCCCCCCCCCCCHH
Confidence 9998765 5777 799999999999999999999999987 7899999884 578999999999999998877
Q ss_pred HH--HHHHhhhhC
Q 025730 239 SW--IWGISSEHN 249 (249)
Q Consensus 239 e~--i~~i~~~~~ 249 (249)
++ +.++|++||
T Consensus 146 ~~~~l~~~a~~~~ 158 (330)
T TIGR01140 146 TLLALAARLRARG 158 (330)
T ss_pred HHHHHHHHhHhcC
Confidence 55 556777764
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=169.55 Aligned_cols=156 Identities=22% Similarity=0.348 Sum_probs=127.9
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCC-cChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPD-PESRRLRAALAKDS----G--LESD-HILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~-~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~ 161 (249)
.+.++++|+.+.++..+++.+.+++.+ +. ....|++ .|.++||+++++++ | ++++ +|++|+|+++++.+
T Consensus 27 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~ 106 (395)
T PRK08175 27 RGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAH 106 (395)
T ss_pred cCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHH
Confidence 346789999998888778777777654 22 2367864 58999999999986 3 4566 79999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc--CCceEEEEcCCCCccccCCChHH
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER--EKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
++..+++|||+|++++|+|..+...++..|++++.++.+.+ ..++++++++++. .++++|++++||||||.+++.++
T Consensus 107 ~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~ 185 (395)
T PRK08175 107 LMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEG-VDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEF 185 (395)
T ss_pred HHHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccC-CCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHH
Confidence 99999999999999999999998888899999999997543 3357888887763 37899999999999999998874
Q ss_pred H--HHHHhhhhC
Q 025730 240 W--IWGISSEHN 249 (249)
Q Consensus 240 ~--i~~i~~~~~ 249 (249)
+ +.++|++||
T Consensus 186 ~~~i~~~a~~~~ 197 (395)
T PRK08175 186 FEKVVALAKRYD 197 (395)
T ss_pred HHHHHHHHHHcC
Confidence 4 667888775
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=170.28 Aligned_cols=154 Identities=27% Similarity=0.410 Sum_probs=123.1
Q ss_pred HHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCC-cChHHHHHHHHHHc----C---CCCCCEEEeCCHH
Q 025730 85 VLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPD-PESRRLRAALAKDS----G---LESDHILVGCGAD 156 (249)
Q Consensus 85 ~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~-~g~~~lr~~la~~~----~---~~~~~I~vt~Ga~ 156 (249)
.++......+.++++|+.|++..+.++.+.+++.+.....+|++ .|.++||+++++++ | +++++|++|+|++
T Consensus 17 ~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~ 96 (364)
T PRK07865 17 PAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSK 96 (364)
T ss_pred HHHHHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHhhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChH
Confidence 33333333445789999998877777888888876333357865 57899999999997 3 6689999999999
Q ss_pred HHHHHHHHHh-cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 157 ELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 157 ~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
++|.+++..+ +++||.|++++|+|..|...++..|++++.++. ++++.. .++++|+++|||||||.++
T Consensus 97 ~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-------~~~l~~----~~~~~v~~~~p~NPtG~~~ 165 (364)
T PRK07865 97 ELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS-------LTELGP----QRPALIWLNSPSNPTGRVL 165 (364)
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC-------hhhCCc----ccceEEEEcCCCCCCCccC
Confidence 9999998888 799999999999999999999999999998852 233322 5789999999999999999
Q ss_pred ChHHH--HHHHhhhhC
Q 025730 236 WTSSW--IWGISSEHN 249 (249)
Q Consensus 236 ~~~e~--i~~i~~~~~ 249 (249)
+.+++ +..+|++||
T Consensus 166 ~~~~~~~i~~~a~~~~ 181 (364)
T PRK07865 166 GVDHLRKVVAWARERG 181 (364)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 88754 566777765
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=173.36 Aligned_cols=166 Identities=15% Similarity=0.161 Sum_probs=137.8
Q ss_pred CcHHHHHHHhCCCCCCeeeccCCCC--CCCCCH---HHHHHHHh-ccC-CCCC-CCcChHHHHHHHHHHcCCCCCCEEEe
Q 025730 81 LPFEVLSIQLGRKPEDIVKIDANEN--PYGPPP---EVREALGQ-LKF-PYIY-PDPESRRLRAALAKDSGLESDHILVG 152 (249)
Q Consensus 81 ~~~~~~~~~~g~~~~~~I~L~~~~~--~~~~p~---~v~~al~~-~~~-~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt 152 (249)
......+..+...+.++|+|+.+++ ++.++. .+.+++.+ +.. ...| +..+..+||++++++++. ++|++|
T Consensus 22 ~~~~~~~~~l~~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~~~~~--~~vv~t 99 (460)
T PRK13238 22 TTREERERALAEAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGDEAYAGSRSYYRLEDAVKDIFGY--PYTIPT 99 (460)
T ss_pred cCHHHHHHHHHHcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCCcccCCCCCHHHHHHHHHHHhCC--CcEEEC
Confidence 4566666666666779999999998 687765 45555543 322 3578 567899999999999984 689999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--------CCC--CCHHHHHHhhcc---CCc
Q 025730 153 CGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--------DFS--LNVELIADAVER---EKP 219 (249)
Q Consensus 153 ~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--------~~~--id~e~l~~~i~~---~~~ 219 (249)
+|+++++.+++.++++||| |++++|.|..|...++..|++++.++.+. +|. +|+++|++.++. +++
T Consensus 100 ~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~t 178 (460)
T PRK13238 100 HQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENV 178 (460)
T ss_pred CCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCce
Confidence 9999999999999999999 99999999999998999999999998642 344 999999999974 369
Q ss_pred eEEEEcCCCCccc-cCCChH--HHHHHHhhhhC
Q 025730 220 KCIFLTSPNNPDG-RFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 220 k~i~l~~PnNPTG-~~~~~~--e~i~~i~~~~~ 249 (249)
++|++++|||||| .+++.+ +.+.++|++||
T Consensus 179 k~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~g 211 (460)
T PRK13238 179 PFIVMTITNNSAGGQPVSMANLRAVYEIAKKYG 211 (460)
T ss_pred eEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 9999999999998 888776 46888999986
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=174.89 Aligned_cols=151 Identities=18% Similarity=0.215 Sum_probs=118.4
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhccCCCCCCC-cChHHHHHHHH-HHc----C---CCCC--CEEEeCCHHHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQLKFPYIYPD-PESRRLRAALA-KDS----G---LESD--HILVGCGADELIDLIMR 164 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~-~g~~~lr~~la-~~~----~---~~~~--~I~vt~Ga~~~l~~~~~ 164 (249)
++|+|+.+++.+++++.+.+...... +..||. .+..+++++++ +++ + .+++ +|++|+|++++|..++.
T Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~-~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~ 173 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFLYEMCDGII-GDNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFD 173 (521)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHhh-cCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHH
Confidence 46999999999987666544444432 246853 46666666666 453 1 2333 89999999999999988
Q ss_pred H-----hcCCCCeEEEcCCCChhHHHHHHHC--CCEEEEecCCC--C-----CCCCHHHHHHhhccCCceEEEEcCCCCc
Q 025730 165 C-----VLDPGDKIVDCPPTFTMYEFDAAVN--GAAVVKVPRKS--D-----FSLNVELIADAVEREKPKCIFLTSPNNP 230 (249)
Q Consensus 165 ~-----~~~pGd~Vlv~~P~y~~~~~~~~~~--G~~v~~v~~~~--~-----~~id~e~l~~~i~~~~~k~i~l~~PnNP 230 (249)
+ +++|||+|++++|+|+.|...++.. |++++.++.+. + |.+|+++++++++ +++|+|+|+|||||
T Consensus 174 ~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~-~~~kai~l~nP~NP 252 (521)
T TIGR03801 174 SLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD-PSIKALFVVNPSNP 252 (521)
T ss_pred HHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC-CCCcEEEEeCCCCC
Confidence 7 7899999999999999999988775 78888887532 2 8899999999877 78999999999999
Q ss_pred cccCCChHHH--HHHHhhhh
Q 025730 231 DGRFSWTSSW--IWGISSEH 248 (249)
Q Consensus 231 TG~~~~~~e~--i~~i~~~~ 248 (249)
||.+++.+++ +..+|++|
T Consensus 253 TG~vls~e~l~~I~~ia~~~ 272 (521)
T TIGR03801 253 PSVAMSDESIEKIVDIVAND 272 (521)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 9999998855 56678775
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=167.23 Aligned_cols=154 Identities=30% Similarity=0.512 Sum_probs=129.0
Q ss_pred CeeeccCCCCCCC----CCHHHHHHHHh----ccCCCCCCCc-ChHHHHHHHHHHcC------CCCC-CEEEeCCHHHHH
Q 025730 96 DIVKIDANENPYG----PPPEVREALGQ----LKFPYIYPDP-ESRRLRAALAKDSG------LESD-HILVGCGADELI 159 (249)
Q Consensus 96 ~~I~L~~~~~~~~----~p~~v~~al~~----~~~~~~Yp~~-g~~~lr~~la~~~~------~~~~-~I~vt~Ga~~~l 159 (249)
++|+|+.|++++. +++.+.+++.+ ......|++. |.++||++++++++ ++++ +|++++|+.+++
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 5899999999987 55666666543 2334789654 69999999999997 7888 999999999999
Q ss_pred HHHHHHh-cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhccC-----CceEEEEcCCCCcc
Q 025730 160 DLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVERE-----KPKCIFLTSPNNPD 231 (249)
Q Consensus 160 ~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPT 231 (249)
..++..+ .++||+|++++|+|..|...++..|.+++.++. ..++.+|++++++.+++. ++++|++++|||||
T Consensus 82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPt 161 (363)
T PF00155_consen 82 FLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPT 161 (363)
T ss_dssp HHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTT
T ss_pred hhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccc
Confidence 9999998 889999999999999999999999999999993 467899999999999842 57899999999999
Q ss_pred ccCCChHHH--HHHHhhhhC
Q 025730 232 GRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~e~--i~~i~~~~~ 249 (249)
|.+++.+++ +..+|++||
T Consensus 162 G~~~~~~~l~~l~~~~~~~~ 181 (363)
T PF00155_consen 162 GSVLSLEELRELAELAREYN 181 (363)
T ss_dssp TBB--HHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhhhcccc
Confidence 999887755 455687764
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=165.50 Aligned_cols=152 Identities=16% Similarity=0.240 Sum_probs=115.0
Q ss_pred CCeeeccCCCCCCCCC--HHHHHHHHh-cc------CCCCCCC-cChHHHHHHHHHHc------CCCCCCEEEeCCHHHH
Q 025730 95 EDIVKIDANENPYGPP--PEVREALGQ-LK------FPYIYPD-PESRRLRAALAKDS------GLESDHILVGCGADEL 158 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p--~~v~~al~~-~~------~~~~Yp~-~g~~~lr~~la~~~------~~~~~~I~vt~Ga~~~ 158 (249)
+++|+|+.+.++..++ +.+.+++.. +. ....|++ .|..+||+++++++ ++++++|++|+|++++
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~a 109 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSA 109 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHH
Confidence 5679999998875443 345566554 22 1247976 47899999999997 3788999999999999
Q ss_pred HHHHHHHhcC-----CCCeEEE-cCCCChhHHHHHHHCCC------EEEEecCCC-CCCCCHHHHHHhhccCCceEEEEc
Q 025730 159 IDLIMRCVLD-----PGDKIVD-CPPTFTMYEFDAAVNGA------AVVKVPRKS-DFSLNVELIADAVEREKPKCIFLT 225 (249)
Q Consensus 159 l~~~~~~~~~-----pGd~Vlv-~~P~y~~~~~~~~~~G~------~v~~v~~~~-~~~id~e~l~~~i~~~~~k~i~l~ 225 (249)
|.++++++++ +||.|++ ++|+|+.|...+...|. .++.++.+. ++++|+++++ +. .+++++++|
T Consensus 110 l~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~-~~~~~i~l~ 186 (416)
T PRK09440 110 FFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID-EDTGAICVS 186 (416)
T ss_pred HHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cC-CCceEEEEe
Confidence 9999999985 6899999 79999999886654332 222232211 3689999997 34 678999999
Q ss_pred CCCCccccCCChHHH--HHHHhhhhC
Q 025730 226 SPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 226 ~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
|||||||.+++.+++ +.++|++||
T Consensus 187 ~P~NPTG~~~s~~~~~~l~~~a~~~~ 212 (416)
T PRK09440 187 RPTNPTGNVLTDEELEKLDALARQHN 212 (416)
T ss_pred cCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 999999999998855 556787765
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=162.33 Aligned_cols=154 Identities=25% Similarity=0.407 Sum_probs=126.3
Q ss_pred CCeeeccCCCCCCC--CCHHHHHHHHh-c---c-C-CCCCC-CcChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHH
Q 025730 95 EDIVKIDANENPYG--PPPEVREALGQ-L---K-F-PYIYP-DPESRRLRAALAKDS----G--LESDHILVGCGADELI 159 (249)
Q Consensus 95 ~~~I~L~~~~~~~~--~p~~v~~al~~-~---~-~-~~~Yp-~~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l 159 (249)
+.+++|+.+.++.. +-....+++.. . . . ...|. ..|..+||+++++++ | +++++|++|+|++++|
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al 168 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL 168 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHH
Confidence 67799988875542 22334444433 1 1 1 24564 478999999999997 3 5778999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEc-CCCCccccCCChH
Q 025730 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLT-SPNNPDGRFSWTS 238 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~-~PnNPTG~~~~~~ 238 (249)
+++++.+++|||+|++++|+|......++.+|++++.||.+ +.++|+|++++.+.+.++|++|++ +-|||||.+++.+
T Consensus 169 ~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d-~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~ 247 (459)
T COG1167 169 DLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVD-EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLE 247 (459)
T ss_pred HHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC-CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHH
Confidence 99999999999999999999999999999999999999996 568999999999987789999966 6689999999998
Q ss_pred HH--HHHHhhhhC
Q 025730 239 SW--IWGISSEHN 249 (249)
Q Consensus 239 e~--i~~i~~~~~ 249 (249)
+. +..+|++||
T Consensus 248 rR~~Ll~lA~~~~ 260 (459)
T COG1167 248 RRKALLALAEKYD 260 (459)
T ss_pred HHHHHHHHHHHcC
Confidence 54 667788775
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=160.03 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=111.8
Q ss_pred CCCeeeccCCC-CCCCCCH----HHHHHHHhc-c--CCCCC-CCcChHHHHHHHHHHc-CC-----CCCCE-----EEeC
Q 025730 94 PEDIVKIDANE-NPYGPPP----EVREALGQL-K--FPYIY-PDPESRRLRAALAKDS-GL-----ESDHI-----LVGC 153 (249)
Q Consensus 94 ~~~~I~L~~~~-~~~~~p~----~v~~al~~~-~--~~~~Y-p~~g~~~lr~~la~~~-~~-----~~~~I-----~vt~ 153 (249)
....|+|+.+. ++...++ .+.+++..+ . ....| |..|.++||+++++++ +. ++++| +.|+
T Consensus 47 ~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~ 126 (423)
T PLN02397 47 SPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGT 126 (423)
T ss_pred CcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccch
Confidence 34568888885 3443333 455554332 2 22468 5579999999999987 22 12333 3445
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhcc--CCceEEEEcCCCC
Q 025730 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVER--EKPKCIFLTSPNN 229 (249)
Q Consensus 154 Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~--~~~k~i~l~~PnN 229 (249)
|+.+ +...+..++.|||+|++++|+|+.|...++..|++++.++. .+++++|++.+++.+.+ .+++++++++|||
T Consensus 127 Ga~~-l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~N 205 (423)
T PLN02397 127 GSLR-LGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHN 205 (423)
T ss_pred HHHH-HHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 5543 33344445579999999999999999999999999999986 24589999999887752 4678898999999
Q ss_pred ccccCCChHHH--HHHHhhhhC
Q 025730 230 PDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 230 PTG~~~~~~e~--i~~i~~~~~ 249 (249)
|||.+++.+++ +..+|++||
T Consensus 206 PTG~v~s~e~l~~i~~~a~~~~ 227 (423)
T PLN02397 206 PTGVDPTPEQWEQISDLIKSKN 227 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHhCC
Confidence 99999998865 567788765
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=158.14 Aligned_cols=136 Identities=18% Similarity=0.256 Sum_probs=107.1
Q ss_pred HHHHHHHHhc--cCCCCCC-CcChHHHHHHHHHHc-----CCCC---CCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCC
Q 025730 111 PEVREALGQL--KFPYIYP-DPESRRLRAALAKDS-----GLES---DHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179 (249)
Q Consensus 111 ~~v~~al~~~--~~~~~Yp-~~g~~~lr~~la~~~-----~~~~---~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~ 179 (249)
+.+.+++.+. .....|+ ..|.++||+++++++ .+.+ ++|++|+|++++|.+++.++++|||+|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~ 102 (388)
T PRK08637 23 SSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHN 102 (388)
T ss_pred HHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 3444444442 2336785 468999999999886 2332 578999999999999999999999999999999
Q ss_pred ChhHHHHHH-HCCCEEEEecCC-CCCCCCHHHHHHhhc---cCCceEEEEcCCCCccccCCChHHH--HHHHhh
Q 025730 180 FTMYEFDAA-VNGAAVVKVPRK-SDFSLNVELIADAVE---REKPKCIFLTSPNNPDGRFSWTSSW--IWGISS 246 (249)
Q Consensus 180 y~~~~~~~~-~~G~~v~~v~~~-~~~~id~e~l~~~i~---~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~ 246 (249)
|+.|...+. ..|++++.++.. +++++|+++++++++ +...++++++|||||||.+++.+++ +..+|+
T Consensus 103 y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~ 176 (388)
T PRK08637 103 WGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIK 176 (388)
T ss_pred CccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHH
Confidence 999998754 589999999973 567899999999875 2345667788999999999988865 444554
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=150.04 Aligned_cols=152 Identities=21% Similarity=0.277 Sum_probs=123.2
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-----------cChHHHHHHHHHHcCC-CCCCEEEeCCHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-----------PESRRLRAALAKDSGL-ESDHILVGCGADELIDL 161 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-----------~g~~~lr~~la~~~~~-~~~~I~vt~Ga~~~l~~ 161 (249)
++.+.|+.+.... .|..+.+++.. +......+. ...+++|+.+++++|+ ++++|++|+|+++++.+
T Consensus 18 ~~~~yld~a~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~ 96 (401)
T PRK10874 18 DAGVYLDSAATAL-KPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINL 96 (401)
T ss_pred CceEEEeCCcccC-CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHH
Confidence 3468999887764 66788888865 321111111 1256899999999998 78999999999999999
Q ss_pred HHHHh----cCCCCeEEEcCCCCh----hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 162 IMRCV----LDPGDKIVDCPPTFT----MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 162 ~~~~~----~~pGd~Vlv~~P~y~----~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
+++++ +++||+|++++|+|. .|...++..|++++.++.+.++.+|+++++++++ +++++|++++||||||.
T Consensus 97 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~t~lv~i~~~~n~tG~ 175 (401)
T PRK10874 97 VAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELIT-PRTRILALGQMSNVTGG 175 (401)
T ss_pred HHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcC-cCcEEEEEeCCcccccC
Confidence 99987 479999999999985 4566678899999999987778899999999997 78999999999999999
Q ss_pred CCChHHHHHHHhhhhC
Q 025730 234 FSWTSSWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~i~~i~~~~~ 249 (249)
++ +.+.+..+|+++|
T Consensus 176 ~~-~~~~i~~l~~~~g 190 (401)
T PRK10874 176 CP-DLARAITLAHQAG 190 (401)
T ss_pred cC-CHHHHHHHHHHcC
Confidence 96 5567777888875
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=149.35 Aligned_cols=151 Identities=19% Similarity=0.266 Sum_probs=121.6
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC--CC-CC-CC-------cChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF--PY-IY-PD-------PESRRLRAALAKDSGLE-SDHILVGCGADELIDLI 162 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~-~Y-p~-------~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~ 162 (249)
+.+.|+.+... +.|+.+.+++.+ +.. .. .+ +. ...+++|+.+++++|.+ +++|++|+|+++++.++
T Consensus 16 ~~iyld~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~ 94 (398)
T TIGR03392 16 GTVYLDSAATA-LKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLV 94 (398)
T ss_pred CeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHH
Confidence 57899988766 366788888765 221 11 11 11 12457999999999984 78999999999999999
Q ss_pred HHHh----cCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 163 MRCV----LDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 163 ~~~~----~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
+.++ +++||+|++++|+|.. |...++..|++++.++.+.++.+|+++++++++ +++++|++++||||||.+
T Consensus 95 ~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~-~~t~lv~i~~~~n~tG~~ 173 (398)
T TIGR03392 95 AQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLT-PRTRILALGQMSNVTGGC 173 (398)
T ss_pred HHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhc-cCceEEEEECcccccccc
Confidence 9987 5799999999999853 556678899999999987777899999999997 689999999999999999
Q ss_pred CChHHHHHHHhhhhC
Q 025730 235 SWTSSWIWGISSEHN 249 (249)
Q Consensus 235 ~~~~e~i~~i~~~~~ 249 (249)
+ +.+.+..+|+++|
T Consensus 174 ~-~~~~i~~~~~~~~ 187 (398)
T TIGR03392 174 P-DLARAITLAHQYG 187 (398)
T ss_pred C-CHHHHHHHHHHcC
Confidence 6 4566778888875
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-17 Score=149.67 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=124.0
Q ss_pred CCCCeeeccCCCC--CCCCCH---HHHHHHH-hccC-CCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANEN--PYGPPP---EVREALG-QLKF-PYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~~--~~~~p~---~v~~al~-~~~~-~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+.+++.|..++. ++.++. .+.++.. .+.. ...| ++.+..+|++++++++|. +++++|+|+++++.+++.
T Consensus 9 ~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd~~Y~~~~g~~~Leeaia~~~g~--~~vv~t~~Gt~Al~la~~ 86 (431)
T cd00617 9 AGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGDEAYAGSKSFYDLEDAVQDLFGF--KHIIPTHQGRGAENILFS 86 (431)
T ss_pred cCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHHCC--CeEEEcCCHHHHHHHHHH
Confidence 4457889999888 665542 3333322 2222 2458 567899999999999995 589999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC----------CCCCCHHHHHHhhccC---CceEEEEcCCCCcc
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS----------DFSLNVELIADAVERE---KPKCIFLTSPNNPD 231 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~----------~~~id~e~l~~~i~~~---~~k~i~l~~PnNPT 231 (249)
++++|||.| +++|+|..|...+...|++++.++.+. .+.+|+++|++++++. ++++|++++||||+
T Consensus 87 al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~ 165 (431)
T cd00617 87 ILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTA 165 (431)
T ss_pred HhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCC
Confidence 999999988 689999999999999999999999642 2449999999999842 37899999999998
Q ss_pred -ccCCChHH--HHHHHhhhhC
Q 025730 232 -GRFSWTSS--WIWGISSEHN 249 (249)
Q Consensus 232 -G~~~~~~e--~i~~i~~~~~ 249 (249)
|.+++.++ .+.++|++||
T Consensus 166 gG~~~s~~~l~~i~eia~~~g 186 (431)
T cd00617 166 GGQPVSMANLREVRELAHKYG 186 (431)
T ss_pred CCccCCHHHHHHHHHHHHHcC
Confidence 89987774 5789999986
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-17 Score=147.43 Aligned_cols=150 Identities=21% Similarity=0.240 Sum_probs=122.3
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-ccCC------CCCCC-----cChHHHHHHHHHHcCCCC-CCEEEeCCHHHHHHHHHH
Q 025730 98 VKIDANENPYGPPPEVREALGQ-LKFP------YIYPD-----PESRRLRAALAKDSGLES-DHILVGCGADELIDLIMR 164 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~~~~------~~Yp~-----~g~~~lr~~la~~~~~~~-~~I~vt~Ga~~~l~~~~~ 164 (249)
+.|+.+.+++++|+.+.+++.+ +... ..|+. ....++|+.++++++.+. ++|++|+|+++++.+++.
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~ 80 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALK 80 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence 3578888888899999888865 2211 12432 346789999999999854 489999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHH----HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH
Q 025730 165 CVLDPGDKIVDCPPTFTMYE----FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~----~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~ 240 (249)
+++++||+|++..++|..+. ..++..|.+++.++.+.++.+|+++++++++ +++++|++++||||||.+++ .+.
T Consensus 81 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~-~~~~~v~~~~~~n~tG~~~~-~~~ 158 (376)
T TIGR01977 81 GLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIK-TNTKLIVVSHASNVTGTILP-IEE 158 (376)
T ss_pred hccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcC-CCCeEEEEECCCCCccccCC-HHH
Confidence 99999999999999987543 4556679999999977778899999999997 68999999999999999975 556
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+..+|+++|
T Consensus 159 i~~l~~~~~ 167 (376)
T TIGR01977 159 IGELAQENG 167 (376)
T ss_pred HHHHHHHcC
Confidence 778888875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=145.01 Aligned_cols=148 Identities=19% Similarity=0.258 Sum_probs=116.2
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-ccCCCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEE
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIV 174 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vl 174 (249)
+|||++|+++. +++.+.+++.+ .....+| |+++..+|++++++++|+++ +++++|+++++.+++.+++.+||+|+
T Consensus 1 ~~~~~~~~~~~-p~~~~~~a~~~~~~~~~~Y~~~~~~~~L~~~la~~~g~~~--~~v~~~g~~a~~~~l~~~~~~gd~vi 77 (333)
T PRK10534 1 MIDLRSDTVTR-PSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEA--ALFLPTGTQANLVALLSHCERGEEYI 77 (333)
T ss_pred CcccccccCCC-CCHHHHHHHHhccCCCcccCCCHHHHHHHHHHHHHhCCCe--EEEeCchHHHHHHHHHHhcCCCCeeE
Confidence 48999999999 88999999876 3444678 88889999999999999754 45777777778777778899999999
Q ss_pred EcCCCCh-hHHHH-HHHCC-CEEEEecCCCCCCCCHHHHHHhhccC-----CceEEEEcCCCCccccCCChHHH--HHHH
Q 025730 175 DCPPTFT-MYEFD-AAVNG-AAVVKVPRKSDFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSWTSSW--IWGI 244 (249)
Q Consensus 175 v~~P~y~-~~~~~-~~~~G-~~v~~v~~~~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~~~e~--i~~i 244 (249)
++.|+|. .|... +...| ++++.++.++++.+|+++++++++.. ++++|++|||+| |.+++.+++ +.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~--G~v~~~~~l~~i~~~ 155 (333)
T PRK10534 78 VGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHN--GKVLPREYLKQAWEF 155 (333)
T ss_pred EechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCCC--CeecCHHHHHHHHHH
Confidence 9988885 34321 23343 78888887778999999999998632 689999998774 999887765 4456
Q ss_pred hhhhC
Q 025730 245 SSEHN 249 (249)
Q Consensus 245 ~~~~~ 249 (249)
|++||
T Consensus 156 ~~~~~ 160 (333)
T PRK10534 156 TRERN 160 (333)
T ss_pred HHHcC
Confidence 77654
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.5e-17 Score=144.55 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=117.4
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhc--cCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcC-CCCe
Q 025730 96 DIVKIDANENPYGPPPEVREALGQL--KFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLD-PGDK 172 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~--~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~-pGd~ 172 (249)
.+++|+.|++++ +++.+.+++... .....|+++...+|+++++++++.+. +++++++++++..++..+++ +||+
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~--~~~~~~Gs~a~~~~l~~~~~~~gd~ 82 (353)
T PLN02721 6 RVVDLRSDTVTK-PTDAMRAAMANAEVDDDVLGYDPTALRLEEEMAKIFGKEA--ALFVPSGTMGNLISVLVHCDVRGSE 82 (353)
T ss_pred hhhhhhcccccC-CCHHHHHHHHhccCCCcccCCCHHHHHHHHHHHHHhCCce--eEEecCccHHHHHHHHHHccCCCCe
Confidence 468999999997 678888888753 33344555557899999999999753 45555555566677777777 9999
Q ss_pred EEEcCCCCh-hHHH--HHHHCCCEEEEecCCCCCCCCHHHHHHhhcc------CCceEEEEcC-CCCccccCCChH--HH
Q 025730 173 IVDCPPTFT-MYEF--DAAVNGAAVVKVPRKSDFSLNVELIADAVER------EKPKCIFLTS-PNNPDGRFSWTS--SW 240 (249)
Q Consensus 173 Vlv~~P~y~-~~~~--~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~------~~~k~i~l~~-PnNPTG~~~~~~--e~ 240 (249)
|++++|+|. .|.. .+...|++++.++.++++.+|++++++++++ +++++|++++ +|||||.+++.+ +.
T Consensus 83 Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~ 162 (353)
T PLN02721 83 VILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDK 162 (353)
T ss_pred EEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHH
Confidence 999999985 4442 5677899999999877788999999999963 3789999987 578999998765 55
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.++|+++|
T Consensus 163 l~~l~~~~g 171 (353)
T PLN02721 163 VGELAKRHG 171 (353)
T ss_pred HHHHHHHcC
Confidence 788898875
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-16 Score=142.92 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=120.1
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccCC--C----CCC-C----cChHHHHHHHHHHcCC-CCCCEEEeCCHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKFP--Y----IYP-D----PESRRLRAALAKDSGL-ESDHILVGCGADELIDLI 162 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~~--~----~Yp-~----~g~~~lr~~la~~~~~-~~~~I~vt~Ga~~~l~~~ 162 (249)
+++.|+.+.... +|+.+.+++.. +... + .|. . ....++|++++++++. ++++|++|+|+++++.++
T Consensus 23 ~~iYld~a~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~ 101 (406)
T PRK09295 23 PLAYLDSAASAQ-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLV 101 (406)
T ss_pred ceEEEeCccccc-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHH
Confidence 579999887653 66778888765 2211 1 111 0 1256899999999997 678999999999999999
Q ss_pred HHH----hcCCCCeEEEcCCCCh----hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 163 MRC----VLDPGDKIVDCPPTFT----MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 163 ~~~----~~~pGd~Vlv~~P~y~----~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
+.+ ++++||+|++++++|. .|...++..|++++.++.+.++.+|+++++++++ +++++|++++|+||||.+
T Consensus 102 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~t~lv~l~~~~n~tG~~ 180 (406)
T PRK09295 102 ANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFD-ERTRLLAITHVSNVLGTE 180 (406)
T ss_pred HHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcC-CCcEEEEEecchhccccc
Confidence 886 4689999999998875 4566677789999999987778899999999997 689999999999999999
Q ss_pred CChHHHHHHHhhhhC
Q 025730 235 SWTSSWIWGISSEHN 249 (249)
Q Consensus 235 ~~~~e~i~~i~~~~~ 249 (249)
++ .+.+.++|+++|
T Consensus 181 ~~-~~~i~~~~~~~~ 194 (406)
T PRK09295 181 NP-LAEMIALAHQHG 194 (406)
T ss_pred CC-HHHHHHHHHHcC
Confidence 65 556677788775
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-16 Score=138.17 Aligned_cols=151 Identities=35% Similarity=0.554 Sum_probs=124.3
Q ss_pred eeccCCCCCCCCCHHHHHHHHh--c-cCCCCC-CCcChHHHHHHHHHHcCCC------CCCEEEeCCHHHHHHHHHHHhc
Q 025730 98 VKIDANENPYGPPPEVREALGQ--L-KFPYIY-PDPESRRLRAALAKDSGLE------SDHILVGCGADELIDLIMRCVL 167 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~--~-~~~~~Y-p~~g~~~lr~~la~~~~~~------~~~I~vt~Ga~~~l~~~~~~~~ 167 (249)
|+|+.|.+++.+++.+.+++.. . .....| +..+..++++.++++++.. .+++++++|+++++..++.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~ 80 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL 80 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC
Confidence 5789999999988887777653 1 122445 4567899999999998643 6789999999999999999999
Q ss_pred CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCH--HHHHHhhccCCceEEEEcCCCCccccCCChHHHH--HH
Q 025730 168 DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNV--ELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWI--WG 243 (249)
Q Consensus 168 ~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~--e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i--~~ 243 (249)
++||+|+++.|+|..+...++..|.+++.++.++++..+. +.++.... .++++|++++|+||||.+++.+++. ..
T Consensus 81 ~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~~~~~~tG~~~~~~~l~~l~~ 159 (350)
T cd00609 81 NPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKT-PKTKLLYLNNPNNPTGAVLSEEELEELAE 159 (350)
T ss_pred CCCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcC-ccceEEEEECCCCCCCcccCHHHHHHHHH
Confidence 9999999999999999999999999999999766666654 66666555 7899999999999999998766553 47
Q ss_pred HhhhhC
Q 025730 244 ISSEHN 249 (249)
Q Consensus 244 i~~~~~ 249 (249)
+|+++|
T Consensus 160 ~~~~~~ 165 (350)
T cd00609 160 LAKKHG 165 (350)
T ss_pred HHHhCC
Confidence 888875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-16 Score=140.03 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=114.5
Q ss_pred CCCCCCCCHHHHHHHHh-ccCCCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCC
Q 025730 103 NENPYGPPPEVREALGQ-LKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF 180 (249)
Q Consensus 103 ~~~~~~~p~~v~~al~~-~~~~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y 180 (249)
.++++++++.+.+++.+ ......| ++....++++.+++++| ++++++++|+++++..++.+++++||+|+++.|+|
T Consensus 4 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~ 81 (338)
T cd06502 4 SDTVTGPTPEMLEAMAAANVGDDVYGEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHTQPGGSVICHETAH 81 (338)
T ss_pred cccCCCCCHHHHHHHHhcccCCcccCCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcc
Confidence 47889999999999986 3222355 66678899999999999 56777888888999999999999999999999998
Q ss_pred hhHH---HHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc------CCceEEEEcCCCCccccCCChHH--HHHHHhhhhC
Q 025730 181 TMYE---FDAAVNGAAVVKVPRKSDFSLNVELIADAVER------EKPKCIFLTSPNNPDGRFSWTSS--WIWGISSEHN 249 (249)
Q Consensus 181 ~~~~---~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~------~~~k~i~l~~PnNPTG~~~~~~e--~i~~i~~~~~ 249 (249)
..+. ..+...|++++.++.+. +.+|++++++++++ .++++|+++||||| |.+++..+ .+.++|+++|
T Consensus 82 ~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~ 159 (338)
T cd06502 82 IYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENG 159 (338)
T ss_pred eeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcC
Confidence 6432 23455899999999754 78999999999973 26899999999998 55556554 4677888764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-16 Score=140.26 Aligned_cols=144 Identities=21% Similarity=0.229 Sum_probs=117.7
Q ss_pred CCCCCCHHHHHHHHhccCCCCCCCcC--hHHHHHHHHHHcCCCCC-CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh
Q 025730 105 NPYGPPPEVREALGQLKFPYIYPDPE--SRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT 181 (249)
Q Consensus 105 ~~~~~p~~v~~al~~~~~~~~Yp~~g--~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~ 181 (249)
.+.+.|+.+.+++.+....++|+... .+++++.+++++|++++ .+++++|+++++.+++.+++.+||+|++..++|.
T Consensus 6 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~ 85 (356)
T cd06451 6 GPSNVPPRVLKAMNRPMLGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVF 85 (356)
T ss_pred CCcCCCHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCch
Confidence 34567789999987632235666543 67899999999998554 5778888899999999999999999999988765
Q ss_pred h--HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 182 M--YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 182 ~--~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
. +...++..|++++.++.+.++.+|++++++.+++.++++|++++|+||||.++ +.+.+.++|+++|
T Consensus 86 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~-~~~~i~~~a~~~~ 154 (356)
T cd06451 86 GDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLN-PLEGIGALAKKHD 154 (356)
T ss_pred hHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCccccc-CHHHHHHHHHhcC
Confidence 3 56777889999999998767889999999999744899999999999999995 5666777888875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.69 E-value=8e-16 Score=142.00 Aligned_cols=152 Identities=21% Similarity=0.171 Sum_probs=120.5
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCC----CC---CCCc----ChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFP----YI---YPDP----ESRRLRAALAKDSGLE-SDHILVGCGADELIDL 161 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~----~~---Yp~~----g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~ 161 (249)
.+.+.|+.+... ++|+.+.+++.+ +... .+ |... ...++|+.++++++.+ +++|++|+|+++++.+
T Consensus 31 ~~~iyLd~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~ 109 (424)
T PLN02855 31 SKLVYLDNAATS-QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINL 109 (424)
T ss_pred CCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHH
Confidence 357999997765 577888888765 2111 11 1111 2468999999999985 5799999999999999
Q ss_pred HHHH----hcCCCCeEEEcCCCCh----hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 162 IMRC----VLDPGDKIVDCPPTFT----MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 162 ~~~~----~~~pGd~Vlv~~P~y~----~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
+++. .+++||+|++.++.|+ .|...++..|++++.++.+.++.+|+++++++++ .++++|++++|+||||.
T Consensus 110 i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~-~~t~lv~i~~~~n~tG~ 188 (424)
T PLN02855 110 VAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLS-EKTKLVATHHVSNVLGS 188 (424)
T ss_pred HHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhc-cCceEEEEeCccccccc
Confidence 9876 3689999999999775 4566677789999999977667799999999998 68999999999999999
Q ss_pred CCChHHHHHHHhhhhC
Q 025730 234 FSWTSSWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~i~~i~~~~~ 249 (249)
+++ .+.+.++|+++|
T Consensus 189 ~~~-~~~I~~l~~~~g 203 (424)
T PLN02855 189 ILP-VEDIVHWAHAVG 203 (424)
T ss_pred cCC-HHHHHHHHHHcC
Confidence 975 456677888875
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=141.73 Aligned_cols=125 Identities=25% Similarity=0.413 Sum_probs=107.0
Q ss_pred CCCCC-cChHHHHHHHHHHc--------CCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHH-CCCE
Q 025730 124 YIYPD-PESRRLRAALAKDS--------GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV-NGAA 193 (249)
Q Consensus 124 ~~Yp~-~g~~~lr~~la~~~--------~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~-~G~~ 193 (249)
..|++ .|.+.+|+++|+++ ..+|+++++++|++.+.+.++.++++|||..+++.|.|+.+....+. .|++
T Consensus 115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgve 194 (471)
T KOG0256|consen 115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVE 194 (471)
T ss_pred hhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCce
Confidence 45655 58999999999997 26899999999999999999999999999999999999998877766 6889
Q ss_pred EEEec--CCCCCCCCHHHHHHhhcc-----CCceEEEEcCCCCccccCCChHHHHH--HHhhhh
Q 025730 194 VVKVP--RKSDFSLNVELIADAVER-----EKPKCIFLTSPNNPDGRFSWTSSWIW--GISSEH 248 (249)
Q Consensus 194 v~~v~--~~~~~~id~e~l~~~i~~-----~~~k~i~l~~PnNPTG~~~~~~e~i~--~i~~~~ 248 (249)
+++|. ..++|+++++++|+++.+ .++|.|+|+||+||.|.+++++++.. ..++++
T Consensus 195 ivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k 258 (471)
T KOG0256|consen 195 IVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK 258 (471)
T ss_pred EEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc
Confidence 98887 456799999999999853 57899999999999999999997743 344443
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=139.66 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=121.7
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-----------cChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-----------PESRRLRAALAKDSGLE-SDHILVGCGADELIDL 161 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-----------~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~ 161 (249)
.+++.|+.+... ++|+.+.+++.+ +......|. ...+++|+.+++++|.+ +++|++|+|+++++.+
T Consensus 17 ~~~~yld~~~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~ 95 (403)
T TIGR01979 17 KPLVYLDSAATS-QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINL 95 (403)
T ss_pred CceEEEeCcccc-CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHH
Confidence 467999998876 466778888865 221111111 13568999999999997 6899999999999999
Q ss_pred HHHHh----cCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 162 IMRCV----LDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 162 ~~~~~----~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
++.++ +++||+|+++++.|.. |...++..|++++.++.++++.+|+++++++++ +++++|++++|+||||.
T Consensus 96 ~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~-~~~~lv~~~~~~~~tG~ 174 (403)
T TIGR01979 96 VAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLT-EKTKLVAITHVSNVLGT 174 (403)
T ss_pred HHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhc-cCCeEEEEEcccccccc
Confidence 98875 5789999999998753 455666789999999987778899999999997 68999999999999999
Q ss_pred CCChHHHHHHHhhhhC
Q 025730 234 FSWTSSWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~i~~i~~~~~ 249 (249)
+++ .+.+..+|+++|
T Consensus 175 ~~~-~~~i~~~~~~~~ 189 (403)
T TIGR01979 175 VNP-VEEIAKLAHQVG 189 (403)
T ss_pred cCC-HHHHHHHHHHcC
Confidence 965 566777888875
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=137.84 Aligned_cols=117 Identities=24% Similarity=0.263 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHHHHHhcC---CCCeEEEcCCCChh----HHHHHHHCCCEEEEecCCCC
Q 025730 131 SRRLRAALAKDSGLE-SDHILVGCGADELIDLIMRCVLD---PGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPRKSD 202 (249)
Q Consensus 131 ~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~~~~~~~---pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~~~~ 202 (249)
..++|+.++++++.+ +++|++|+|+++++.+++.++.. +||+|++++++|.. +...++..|++++.++.+.+
T Consensus 45 ~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 124 (373)
T cd06453 45 YEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDD 124 (373)
T ss_pred HHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCC
Confidence 457999999999987 78999999999999999999887 89999999999975 34455678999999998777
Q ss_pred CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 ~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.+|+++++++++ +++++|++++|+||||.++ +.+.+..+|+++|
T Consensus 125 ~~~d~~~l~~~l~-~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~ 169 (373)
T cd06453 125 GQLDLEALEKLLT-ERTKLVAVTHVSNVLGTIN-PVKEIGEIAHEAG 169 (373)
T ss_pred CCcCHHHHHHHhc-CCceEEEEeCcccccCCcC-CHHHHHHHHHHcC
Confidence 8899999999998 5899999999999999996 4567778888875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=139.10 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=115.6
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-ccC-C----CCCCC-----cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 98 VKIDANENPYGPPPEVREALGQ-LKF-P----YIYPD-----PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~~~-~----~~Yp~-----~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
+.|+.+.... +|+.+.+++.+ +.. . ..|.. .-..++|+.+++++|.++++|++|+|+++++..++.++
T Consensus 2 ~yld~a~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~ 80 (381)
T PRK02948 2 IYLDYAATTP-MSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSL 80 (381)
T ss_pred EeccCCCCCC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHH
Confidence 5677666553 56788888865 221 1 11110 11457899999999999999999999999999988877
Q ss_pred c----CCCCeEEEcCCCCh---hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 167 L----DPGDKIVDCPPTFT---MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 167 ~----~pGd~Vlv~~P~y~---~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
+ ++||+|++....|+ .+...++..|++++.++.++++.+|+++++++++ +++++|++++||||||.++ +.+
T Consensus 81 ~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-~~~~lv~~~~~~n~tG~~~-~~~ 158 (381)
T PRK02948 81 LNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAIT-PDTVLASIQHANSEIGTIQ-PIA 158 (381)
T ss_pred HHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcC-CCCEEEEEECCcCCcEeeh-hHH
Confidence 5 57899999986665 4444566789999999987778899999999997 6889999999999999996 556
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+..+|+++|
T Consensus 159 ~I~~l~~~~~ 168 (381)
T PRK02948 159 EIGALLKKYN 168 (381)
T ss_pred HHHHHHHHcC
Confidence 6777888765
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=137.27 Aligned_cols=143 Identities=22% Similarity=0.214 Sum_probs=113.2
Q ss_pred CCCCCCCHHHHHHHHhccC--C-----C-CC---CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCe
Q 025730 104 ENPYGPPPEVREALGQLKF--P-----Y-IY---PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK 172 (249)
Q Consensus 104 ~~~~~~p~~v~~al~~~~~--~-----~-~Y---p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~ 172 (249)
..+-+..+.+.+++..... . . .. -++...++++++++++|+ +++++|+|+++++.+++.+++++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~~~gd~ 85 (361)
T cd06452 8 QRGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLCEKGDW 85 (361)
T ss_pred hcCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhcCCCCE
Confidence 3444556788888876321 1 0 11 113367899999999997 78999999999999999999999999
Q ss_pred EEEcCCCChhHHHHHHHCCCEEEEecCCCC--CCCCHHHHHHhhcc------CCceEEEEcCCCCccccCCChHHHHHHH
Q 025730 173 IVDCPPTFTMYEFDAAVNGAAVVKVPRKSD--FSLNVELIADAVER------EKPKCIFLTSPNNPDGRFSWTSSWIWGI 244 (249)
Q Consensus 173 Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~--~~id~e~l~~~i~~------~~~k~i~l~~PnNPTG~~~~~~e~i~~i 244 (249)
|+++.++|......++..|++++.++.+.+ |.+|++++++++++ .++++|+++|||||||.. .+.+.+.++
T Consensus 86 Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~-~~~~~i~~~ 164 (361)
T cd06452 86 VVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNL-HDAKKIAKV 164 (361)
T ss_pred EEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeee-ccHHHHHHH
Confidence 999999876555677889999999997543 58999999998862 378999999999999998 566677778
Q ss_pred hhhhC
Q 025730 245 SSEHN 249 (249)
Q Consensus 245 ~~~~~ 249 (249)
|+++|
T Consensus 165 ~~~~~ 169 (361)
T cd06452 165 CHEYG 169 (361)
T ss_pred HHHcC
Confidence 88865
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-15 Score=134.82 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=119.4
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-ccC-----CCCCCCc-C----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LKF-----PYIYPDP-E----SRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~~-----~~~Yp~~-g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
.+.|+.+.... +|+.+++++.+ +.. ...|+.. + ..++|+.+++++|.++++|++++|+++++.+++.+
T Consensus 18 ~~yl~~~~~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~ 96 (397)
T TIGR01976 18 RVFFDNPAGTQ-IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRA 96 (397)
T ss_pred eEEecCCccCC-CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHH
Confidence 68998876654 67778887765 221 1235432 1 46899999999999877899999999999888776
Q ss_pred h---cCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 166 V---LDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 166 ~---~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
+ +++||+|++.+|.|.. |...++..|++++.++.+. ++.+|+++++++++ +++++|++++|+||||.++ +
T Consensus 97 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~-~~~~lv~i~~~~n~tG~~~-~ 174 (397)
T TIGR01976 97 ISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLS-PRTRLVAVTAASNTLGSIV-D 174 (397)
T ss_pred HHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcC-CCceEEEEeCCCCCCCccC-C
Confidence 5 6899999999998853 3455677899999998754 67899999999997 6899999999999999995 5
Q ss_pred HHHHHHHhhhhC
Q 025730 238 SSWIWGISSEHN 249 (249)
Q Consensus 238 ~e~i~~i~~~~~ 249 (249)
.+.+.++|++||
T Consensus 175 ~~~i~~~~~~~~ 186 (397)
T TIGR01976 175 LAAITELVHAAG 186 (397)
T ss_pred HHHHHHHHHHcC
Confidence 677778888875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.7e-15 Score=134.66 Aligned_cols=149 Identities=18% Similarity=0.210 Sum_probs=117.5
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-ccCCCCC--CC-----------cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 98 VKIDANENPYGPPPEVREALGQ-LKFPYIY--PD-----------PESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~~~~~~Y--p~-----------~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
|.|+.+... ++|+.+.+++.. +.....| +. ....++|+.+++++|.++++|++++|+++++.+++
T Consensus 5 iyld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l 83 (404)
T PRK14012 5 IYLDYSATT-PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAI 83 (404)
T ss_pred EEecCcCCC-CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHH
Confidence 677777664 567788888765 3200011 10 12457899999999998899999999999999988
Q ss_pred HHhc----CCCCeEEEcCCCChhHHHHH---HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 164 RCVL----DPGDKIVDCPPTFTMYEFDA---AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 164 ~~~~----~pGd~Vlv~~P~y~~~~~~~---~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
.++. .+||+|+++.++|..+...+ +..|++++.++.+.++.+|+++++++++ .++++|++++++||||.++
T Consensus 84 ~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~-~~t~lv~~~~~~n~tG~~~- 161 (404)
T PRK14012 84 KGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMR-DDTILVSIMHVNNEIGVIQ- 161 (404)
T ss_pred HHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcC-CCCEEEEEECcCCCccchh-
Confidence 7663 78999999999997654333 3469999999987788899999999998 6899999999999999995
Q ss_pred hHHHHHHHhhhhC
Q 025730 237 TSSWIWGISSEHN 249 (249)
Q Consensus 237 ~~e~i~~i~~~~~ 249 (249)
+.+.+..+|+++|
T Consensus 162 ~~~~I~~la~~~g 174 (404)
T PRK14012 162 DIAAIGEICRERG 174 (404)
T ss_pred hHHHHHHHHHHcC
Confidence 5677888898875
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-14 Score=133.21 Aligned_cols=153 Identities=22% Similarity=0.223 Sum_probs=123.1
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHhccC--C------CCCC---CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQLKF--P------YIYP---DPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~~~~--~------~~Yp---~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
.+++|+|+--.---++++.+.+++.+... . +++. .+...++++.+|+++|. +++++++|+++++..+
T Consensus 17 ~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~--~~~~~~~g~t~a~~~a 94 (387)
T PRK09331 17 EEEFINLDPIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM--DEARVTHGAREGKFAV 94 (387)
T ss_pred cccccccChhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHH
Confidence 45667777665555677888888876211 1 1111 22468999999999997 4688899999999999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhcc------CCceEEEEcCCCCccccC
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVER------EKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~------~~~k~i~l~~PnNPTG~~ 234 (249)
+.+++++||+|++..++|......++..|++++.++. ++++.+|++++++++++ +++++|++++|+|+||.+
T Consensus 95 l~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~ 174 (387)
T PRK09331 95 MHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNL 174 (387)
T ss_pred HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccc
Confidence 9999999999999999987655667889999999997 66788999999999863 268999999999999998
Q ss_pred CChHHHHHHHhhhhC
Q 025730 235 SWTSSWIWGISSEHN 249 (249)
Q Consensus 235 ~~~~e~i~~i~~~~~ 249 (249)
.+.+.+..+|+++|
T Consensus 175 -~~l~~I~~la~~~g 188 (387)
T PRK09331 175 -ADAKKVAKVAHEYG 188 (387)
T ss_pred -ccHHHHHHHHHHcC
Confidence 57778888899875
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=133.15 Aligned_cols=149 Identities=21% Similarity=0.258 Sum_probs=117.0
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-cc--C--CCCCC-------CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 98 VKIDANENPYGPPPEVREALGQ-LK--F--PYIYP-------DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~~--~--~~~Yp-------~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
+.|+.+... +.++.+++++.. +. . ..... .....++|+.+++++|+++++|++|+|+++++.+++..
T Consensus 5 ~yld~aa~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~ 83 (402)
T TIGR02006 5 IYLDYAATT-PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKG 83 (402)
T ss_pred EEeeCCcCC-CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHH
Confidence 678777654 467788888754 21 1 11100 11256789999999999999999999999999998876
Q ss_pred hc----CCCCeEEEcCCCChhHHHH---HHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 166 VL----DPGDKIVDCPPTFTMYEFD---AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 166 ~~----~pGd~Vlv~~P~y~~~~~~---~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
+. ++||+|++..++|..+... ++..|++++.++.+.++.+|+++++++++ +++++|++++++||||.+. +.
T Consensus 84 l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-~~~~lv~v~~~~n~tG~~~-~~ 161 (402)
T TIGR02006 84 IAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIR-DDTILVSIMHVNNEIGVIQ-DI 161 (402)
T ss_pred HHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC-CCCEEEEEECCCcCceecc-cH
Confidence 53 6899999999999854433 34569999999987788899999999997 6799999999999999995 56
Q ss_pred HHHHHHhhhhC
Q 025730 239 SWIWGISSEHN 249 (249)
Q Consensus 239 e~i~~i~~~~~ 249 (249)
+.+..+|+++|
T Consensus 162 ~~I~~l~~~~g 172 (402)
T TIGR02006 162 AAIGEICRERK 172 (402)
T ss_pred HHHHHHHHHcC
Confidence 67788888875
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=135.19 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=120.0
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhccCCCCC-C-----CcC----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQLKFPYIY-P-----DPE----SRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Y-p-----~~g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
..+.|+.+.+++..|..+.+.+........| | ..+ ..++++.+++++|++.+++++|+|+++++..++.+
T Consensus 69 ~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a 148 (447)
T PRK00451 69 YPSFLGAGAYDHYIPAVVDHIISRSEFYTAYTPYQPEISQGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMA 148 (447)
T ss_pred CcccCcccccCCcCcHHHHHHHhchhHHHhcCCCCCccchHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHH
Confidence 5678889999988887776665432221234 3 222 23455777888999888999999999999999888
Q ss_pred hc-CCCCeEEEcCCCChhHHHHHHH----CCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH
Q 025730 166 VL-DPGDKIVDCPPTFTMYEFDAAV----NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 166 ~~-~pGd~Vlv~~P~y~~~~~~~~~----~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~ 240 (249)
+. .+||+|+++++.|+.|...++. .|++++.++.+++ .+|+++++++++ +++++|++++| ||||.+ .+.+.
T Consensus 149 ~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~-~~t~~v~l~~p-n~tG~v-~~l~~ 224 (447)
T PRK00451 149 VRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVD-DDTAAVVVQYP-NFFGVI-EDLEE 224 (447)
T ss_pred HHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcC-CCeEEEEEECC-CCCCee-CCHHH
Confidence 74 7999999999999877766554 7999999998777 899999999997 68999999999 899999 46777
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.++|+++|
T Consensus 225 I~~~a~~~~ 233 (447)
T PRK00451 225 IAEIAHAGG 233 (447)
T ss_pred HHHHHHHCC
Confidence 888999875
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=135.66 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=106.2
Q ss_pred eeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcC
Q 025730 98 VKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCP 177 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~ 177 (249)
|.++.+.++....+. .... ..+|+++...+|+++++++.+ .+++++++|++++|.+++.+++++||+|+++.
T Consensus 26 i~~ss~~~~~~~~~~-----~~~~-Y~R~~~p~~~~le~~lA~l~g--~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~ 97 (382)
T TIGR02080 26 IYLSTTYNFTGFNEP-----RAYD-YSRSGNPTRDLLQQALAELEG--GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPH 97 (382)
T ss_pred eeCCceeEeCCcCcc-----CCCc-ccCCCCchHHHHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcC
Confidence 777777765542211 1111 367888889999999999998 57899999999999999999999999999999
Q ss_pred CCChh-HHHHH---HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 178 PTFTM-YEFDA---AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 178 P~y~~-~~~~~---~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+|.. |.... ...|.++..++. .|+++++++++ +++|+|++++||||||.+++ .+.+.++|+++|
T Consensus 98 p~y~~~~~~~~~~~~~~~~~v~~~d~-----~d~~~l~~ai~-~~tklV~l~~p~NPtG~~~d-l~~I~~la~~~g 166 (382)
T TIGR02080 98 DCYGGTYRLLNALAKKGCFRVLFVDQ-----GDEQALRAALA-QKPKLVLIETPSNPLLRVVD-IAKICHLAKAVG 166 (382)
T ss_pred CCcHHHHHHHHHHHhhcCeEEEEECC-----CCHHHHHHhcC-cCceEEEEECCCCCCCEecC-HHHHHHHHHHcC
Confidence 99984 43322 223566666542 37899999997 68999999999999999964 556777788765
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-15 Score=134.32 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=99.2
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh-HHHH---HHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM-YEFD---AAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~-~~~~---~~~~G~~v~~v~~ 199 (249)
.+|+++....|++++|++.| .+++++++|+++++.+++.+++++||+|+++.|+|.. +... ....|.+++.++.
T Consensus 48 ~R~~npt~~~Le~~lA~leg--~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 125 (388)
T PRK08861 48 TRSGNPNRGLLEQTLSELES--GKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125 (388)
T ss_pred cCCCCchHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC
Confidence 57788889999999999999 5899999999999999999999999999999999984 4432 2335788888853
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++++|++++||||||.+++ .+.+..+|+++|
T Consensus 126 -----~d~e~l~~~i~-~~tklV~lesP~NPtG~v~d-l~~I~~la~~~g 168 (388)
T PRK08861 126 -----SDAAALDAALA-KKPKLILLETPSNPLVRVVD-IAELCQKAKAVG 168 (388)
T ss_pred -----CCHHHHHHhcC-cCCeEEEEECCCCCCCcccC-HHHHHHHHHHcC
Confidence 58999999997 68999999999999999975 456677788764
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-14 Score=130.82 Aligned_cols=153 Identities=24% Similarity=0.274 Sum_probs=129.2
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHhc-----cCCC--CCCCc-----ChHHHHHHHHHHcCCCC-CCEEEeCCHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQL-----KFPY--IYPDP-----ESRRLRAALAKDSGLES-DHILVGCGADELID 160 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~~-----~~~~--~Yp~~-----g~~~lr~~la~~~~~~~-~~I~vt~Ga~~~l~ 160 (249)
.++++.|+...... .|..+.+++... ...+ .|+.. ..++.|+.+++++|.++ ++|++|.|+|++|+
T Consensus 20 ~~~~vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln 98 (405)
T COG0520 20 GKPLVYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALN 98 (405)
T ss_pred CCCeEEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHH
Confidence 35678999887776 778888888752 1111 12211 25789999999999985 89999999999999
Q ss_pred HHHHHh---cCCCCeEEEcCCCCh----hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 161 LIMRCV---LDPGDKIVDCPPTFT----MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 161 ~~~~~~---~~pGd~Vlv~~P~y~----~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
++..++ +.+||+|++.+-.|. +|...++..|++++.+|.++++.+|.+.++..++ ++||+|.+++.+|.||.
T Consensus 99 ~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~-~~Tklvais~vSn~tG~ 177 (405)
T COG0520 99 LVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLIT-PKTKLVALSHVSNVTGT 177 (405)
T ss_pred HHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcC-CCceEEEEECccccccc
Confidence 999998 699999999999986 6778888889999999988889999999999888 79999999999999999
Q ss_pred CCChHHHHHHHhhhhC
Q 025730 234 FSWTSSWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~i~~i~~~~~ 249 (249)
+ .+.+.|.++|+++|
T Consensus 178 ~-~pv~~I~~la~~~g 192 (405)
T COG0520 178 V-NPVKEIAELAHEHG 192 (405)
T ss_pred c-chHHHHHHHHHHcC
Confidence 9 67888899999986
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=133.31 Aligned_cols=116 Identities=22% Similarity=0.282 Sum_probs=98.7
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHH----HHHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE----FDAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~----~~~~~~G~~v~~v~~ 199 (249)
.+||+++..+|++++++++|. +++++++|+++++..++.+++++||+|+++.|.|..+. ..++..|++++.++.
T Consensus 59 ~r~~~p~~~~Le~~iA~~~g~--~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~ 136 (400)
T PRK06234 59 SRLGNPTSTEVENKLALLEGG--EAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDT 136 (400)
T ss_pred cCCCCccHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECC
Confidence 566788999999999999995 46788899999999999999999999999999886433 334668999999975
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
. |+++++++++ +++|+|++++|+||||.+. +.+.+.++|+++
T Consensus 137 ~-----d~e~l~~~i~-~~tklI~iesP~NPtG~v~-dl~~I~~la~~~ 178 (400)
T PRK06234 137 S-----NLEEVRNALK-ANTKVVYLETPANPTLKVT-DIKAISNIAHEN 178 (400)
T ss_pred C-----CHHHHHHHhc-cCCeEEEEECCCCCCCCcC-CHHHHHHHHHhc
Confidence 3 7899999997 6899999999999999995 566777888875
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-14 Score=129.46 Aligned_cols=147 Identities=21% Similarity=0.222 Sum_probs=112.7
Q ss_pred ccCCCCCCCCCHHHHHHHHh-ccCCCCCCCc----------ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhc-
Q 025730 100 IDANENPYGPPPEVREALGQ-LKFPYIYPDP----------ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVL- 167 (249)
Q Consensus 100 L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~----------g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~- 167 (249)
|+.+... ++|+.+.+++.+ +.....+|.. ...++|+.+++++|+++++|++|+|+++++.+++..++
T Consensus 3 ld~aa~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~ 81 (379)
T TIGR03402 3 LDNNATT-RVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALA 81 (379)
T ss_pred CCCcCCC-CCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 4444332 356788888865 2211222211 14578899999999999999999999999999988764
Q ss_pred --CCCCeEEEcCCCChhHHH---HHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHH
Q 025730 168 --DPGDKIVDCPPTFTMYEF---DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIW 242 (249)
Q Consensus 168 --~pGd~Vlv~~P~y~~~~~---~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~ 242 (249)
.+||+|++...+|+.+.. ..+..|.+++.++.+.++.+|+++++++++ ++++++++++++||||.+++ .+.+.
T Consensus 82 ~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~-~~~~lv~i~~~~n~tG~~~~-~~~I~ 159 (379)
T TIGR03402 82 AQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAIT-DDTALVSVMWANNETGTIFP-IEEIG 159 (379)
T ss_pred hcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcC-CCcEEEEEEcccCCeeeccc-HHHHH
Confidence 456899999988875433 334479999999987777899999999997 68999999999999999965 56678
Q ss_pred HHhhhhC
Q 025730 243 GISSEHN 249 (249)
Q Consensus 243 ~i~~~~~ 249 (249)
.+|+++|
T Consensus 160 ~l~~~~g 166 (379)
T TIGR03402 160 EIAKERG 166 (379)
T ss_pred HHHHHcC
Confidence 8898875
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=132.24 Aligned_cols=117 Identities=23% Similarity=0.267 Sum_probs=97.0
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh-HHHHHHH---CCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM-YEFDAAV---NGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~-~~~~~~~---~G~~v~~v~~ 199 (249)
.+|+++....|++++|+++|. +++++++|++++|.+++.+++++||+|++++|+|.. |...... .|.++..++
T Consensus 47 ~R~~~pt~~~L~~~lA~l~g~--~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd- 123 (386)
T PRK08045 47 SRRGNPTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD- 123 (386)
T ss_pred eCCCCccHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-
Confidence 678888899999999999994 479999999999999999999999999999999984 4433322 445666664
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
..|+++++++++ +++|+|++++||||||.++ +.+.+.++|+++|
T Consensus 124 ----~~d~e~l~~~l~-~~tklV~l~sP~NPtG~v~-di~~I~~ia~~~g 167 (386)
T PRK08045 124 ----QGDEQALRAALA-EKPKLVLVESPSNPLLRVV-DIAKICHLAREAG 167 (386)
T ss_pred ----CCCHHHHHHhcc-cCCeEEEEECCCCCCCEec-CHHHHHHHHHHcC
Confidence 258999999997 6899999999999999996 4567777788764
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-14 Score=128.99 Aligned_cols=148 Identities=20% Similarity=0.220 Sum_probs=113.2
Q ss_pred eccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-----------cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 99 KIDANENPYGPPPEVREALGQ-LKFPYIYPD-----------PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 99 ~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-----------~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.|+.+... +.|+.+.+++.. +......|. .-..++|+.+++++|.++++|++|+|+++++++++..+
T Consensus 2 Yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~ 80 (364)
T PLN02651 2 YLDMQATT-PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGV 80 (364)
T ss_pred cccCcCCC-CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHH
Confidence 45555444 467888888865 211111111 11567899999999999899999999999988876654
Q ss_pred ----cCCCCeEEEcCCCChhHHH---HHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 167 ----LDPGDKIVDCPPTFTMYEF---DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 167 ----~~pGd~Vlv~~P~y~~~~~---~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
.++||+|++....|+.+.. ..+..|++++.++.++++.+|+++++++++ ++++++++++++|+||.++ +.+
T Consensus 81 ~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~t~lv~v~~~~n~tG~~~-~l~ 158 (364)
T PLN02651 81 MHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIR-PDTALVSVMAVNNEIGVIQ-PVE 158 (364)
T ss_pred HHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC-CCcEEEEEECCCCCceecc-cHH
Confidence 4789999999977764333 233579999999987778899999999998 6899999999999999995 566
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+.++|+++|
T Consensus 159 ~I~~~~~~~g 168 (364)
T PLN02651 159 EIGELCREKK 168 (364)
T ss_pred HHHHHHHHcC
Confidence 7778898875
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=131.76 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=109.7
Q ss_pred eccCCCCCCCCCHHHHHHHHh-ccC-------CCCCCCcChHHHHHHHHHHc---CC-CCCCEEEeCCHHHHHHHHHHHh
Q 025730 99 KIDANENPYGPPPEVREALGQ-LKF-------PYIYPDPESRRLRAALAKDS---GL-ESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 99 ~L~~~~~~~~~p~~v~~al~~-~~~-------~~~Yp~~g~~~lr~~la~~~---~~-~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.|+.+.... +++.+++++.. ... .+.|+..+...+++++++++ +. ++++|++|+|+++++.++++++
T Consensus 2 yld~aa~~~-~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~ 80 (382)
T TIGR03403 2 YLDNNATTM-LDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGV 80 (382)
T ss_pred cccCcCCCC-CCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHH
Confidence 455555443 55678888765 211 12334334556777776665 44 6789999999999999999876
Q ss_pred c-----CC-CCeEEEcCCCChhHH---HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 167 L-----DP-GDKIVDCPPTFTMYE---FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 167 ~-----~p-Gd~Vlv~~P~y~~~~---~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
. ++ ||+|++....|+.+. ..++..|++++.++.++++.+|+++++++++ .+++++++++||||||.+++
T Consensus 81 ~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~-~~t~lv~~~~~~n~tG~~~~- 158 (382)
T TIGR03403 81 YFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAIT-EKTALVSVMWANNETGMIFP- 158 (382)
T ss_pred HHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcc-cCCeEEEEEcccCCCccccC-
Confidence 2 45 478999987775443 3455689999999987778899999999997 68899999999999999975
Q ss_pred HHHHHHHhhhhC
Q 025730 238 SSWIWGISSEHN 249 (249)
Q Consensus 238 ~e~i~~i~~~~~ 249 (249)
.+.+..+|+++|
T Consensus 159 ~~~I~~la~~~g 170 (382)
T TIGR03403 159 IKEIGEICKERG 170 (382)
T ss_pred HHHHHHHHHHcC
Confidence 556777888875
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=132.44 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=100.9
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH----HHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF----DAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~----~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+++++| .+++++++|+++++.+++.+++++||+|++++|+|..+.. .+...|+++..++.
T Consensus 60 ~r~~~pt~~~Le~~lA~l~g--~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 137 (394)
T PRK07050 60 GLHATPTSLALAQRLAEIEG--GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDP 137 (394)
T ss_pred CCCCCHHHHHHHHHHHHHhC--CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECC
Confidence 56788888999999999999 4689999999999999999999999999999999986553 45668999998874
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
. +.++++++++ +++|+|+++||+||+|.. .+.+.+.++|+++|
T Consensus 138 ~-----~~~~l~~~i~-~~tklV~le~p~Np~~~~-~di~~I~~ia~~~g 180 (394)
T PRK07050 138 L-----IGAGIADLIQ-PNTRLIWLEAPGSVTMEV-PDVPAITAAARARG 180 (394)
T ss_pred C-----CHHHHHHhcC-CCCeEEEEECCCCCCccH-hhHHHHHHHHHHcC
Confidence 2 4578888887 789999999999999988 57777888898875
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=132.51 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=95.0
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH----HHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~ 199 (249)
.+|+++....|++.||++.+ .+++++++|++++|..++.+++++||+|+++.|+|..|...+ ...|++++.++.
T Consensus 78 ~R~~~Pt~~~Le~~lA~leg--~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~ 155 (427)
T PRK07049 78 SRFNHPNSEIVEDRLAVYEG--AESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFAD 155 (427)
T ss_pred cCCCCcCHHHHHHHHHHHhC--CCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeC
Confidence 67888889999999999998 457888899999999999999999999999999999887653 457998877763
Q ss_pred CCCCCCCHHHHHHhhc----cCCceEEEEcCCCCccccCCChHHHHHHHhhh
Q 025730 200 KSDFSLNVELIADAVE----REKPKCIFLTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~----~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
..|++.+++++. +.++|+||+++||||||.+++.+ .+.+|+++
T Consensus 156 ----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~-~l~~la~~ 202 (427)
T PRK07049 156 ----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVA-AVRRVADA 202 (427)
T ss_pred ----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHH-HHHHHHHH
Confidence 246777776663 25799999999999999997554 44444443
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=131.05 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=96.6
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+|++.|. .+++++ ++++++|.+++.+++++||+|+++.|+|.. +...+...|.+++.++.
T Consensus 55 ~R~~~p~~~~Le~~lA~l~g~-~~~v~~-~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 55 TRSGNPTRDLLGEALAELEGG-AGGVIT-ATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL 132 (405)
T ss_pred cCCCChHHHHHHHHHHHHhCC-CceEEE-cCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC
Confidence 566777788999999999986 345555 445799999999999999999999999985 45555667888888875
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ .++|+|+++||+||||.+ .+.+.+.++|+++|
T Consensus 133 -----~d~~~l~~~i~-~~tklV~l~~P~NPtG~v-~dl~~I~~la~~~g 175 (405)
T PRK08776 133 -----TDPRSLADALA-QSPKLVLIETPSNPLLRI-TDLRFVIEAAHKVG 175 (405)
T ss_pred -----CCHHHHHHhcC-cCCeEEEEECCCCCCCcc-CCHHHHHHHHHHcC
Confidence 37899999997 689999999999999999 46677777888875
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-14 Score=127.36 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=118.9
Q ss_pred CCCeeeccCCCC-CCCCCHHHHHHHHh-cc-CCCCCCC-c---Ch----HHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANEN-PYGPPPEVREALGQ-LK-FPYIYPD-P---ES----RRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~-~~~~p~~v~~al~~-~~-~~~~Yp~-~---g~----~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
+.++|+|+.|+. .+++++++++++.+ +. .+..|+. . |. .+|++++|+++|. +++++++|+++++..+
T Consensus 37 g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~--~~~ii~~~~~~a~~~~ 114 (393)
T TIGR01822 37 GREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGT--EDTILYASCFDANGGL 114 (393)
T ss_pred CceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCC--CcEEEECchHHHHHHH
Confidence 457899999985 67778888888765 32 2345532 2 43 7899999999995 5688888999999999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc---C--CceEEEEcCCCCccccCCCh
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---E--KPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~---~--~~k~i~l~~PnNPTG~~~~~ 237 (249)
+.+++++||+|++++|+|..+...++..+.+.+.++ ..|++++++++++ . ++++|++.+++||||.+. +
T Consensus 115 ~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~-~ 188 (393)
T TIGR01822 115 FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIA-P 188 (393)
T ss_pred HHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcC-C
Confidence 999999999999999999998888888888776553 3789999998863 2 788999889999999994 5
Q ss_pred HHHHHHHhhhhC
Q 025730 238 SSWIWGISSEHN 249 (249)
Q Consensus 238 ~e~i~~i~~~~~ 249 (249)
.+.+.++|++||
T Consensus 189 l~~i~~la~~~~ 200 (393)
T TIGR01822 189 LDEICDLADKYD 200 (393)
T ss_pred HHHHHHHHHHcC
Confidence 677788899875
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.4e-14 Score=126.73 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=115.0
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHhccCCCCC-C-----CcChHHHHHHH----HHHcCCCCCCEEEeCCHH-HHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQLKFPYIY-P-----DPESRRLRAAL----AKDSGLESDHILVGCGAD-ELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Y-p-----~~g~~~lr~~l----a~~~~~~~~~I~vt~Ga~-~~l~~~~ 163 (249)
..++.|+.+++.+++|+.+.++.........| + ..|..++++++ ++++|++.++++++++++ ++...+.
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~ 99 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGL 99 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHH
Confidence 35699999999999988887766554111334 2 24555555554 455677766777777544 4555555
Q ss_pred HHhcCC--CCeEEEcCCCChhHHHHHHHCC----CEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 164 RCVLDP--GDKIVDCPPTFTMYEFDAAVNG----AAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 164 ~~~~~p--Gd~Vlv~~P~y~~~~~~~~~~G----~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
.+++.+ ||+|++++|.|+.+...+...| ++++.++.++++.+|+++++++++ +++++|++++|+ |||.+.+.
T Consensus 100 ~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~t~~viv~~~~-~~G~~~~~ 177 (398)
T cd00613 100 AAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVS-EEVAALMVQYPN-TLGVFEDL 177 (398)
T ss_pred HHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcC-CCeEEEEEECCC-CCceecch
Confidence 556666 9999999999998888877777 999999976677899999999997 689999999986 89999533
Q ss_pred HHHHHHHhhhhC
Q 025730 238 SSWIWGISSEHN 249 (249)
Q Consensus 238 ~e~i~~i~~~~~ 249 (249)
.+.+.++|++||
T Consensus 178 l~~i~~la~~~g 189 (398)
T cd00613 178 IKEIADIAHSAG 189 (398)
T ss_pred HHHHHHHHHhcC
Confidence 488999999986
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-13 Score=124.80 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHh-ccCCCCCCC-----------cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcC----CC-
Q 025730 108 GPPPEVREALGQ-LKFPYIYPD-----------PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLD----PG- 170 (249)
Q Consensus 108 ~~p~~v~~al~~-~~~~~~Yp~-----------~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~----pG- 170 (249)
++|+.+++++.+ +......|. .-..++|+.+++++++++++|++|+|+++++.+++.++.. +|
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~ 88 (353)
T TIGR03235 9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGK 88 (353)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCC
Confidence 466788888865 211111111 0146799999999999999999999999999999988753 56
Q ss_pred CeEEEcCCCChhH---HHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh
Q 025730 171 DKIVDCPPTFTMY---EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 171 d~Vlv~~P~y~~~---~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
|.|++....|+.+ ...++..|++++.++.++++.+|+++++++++ +++++|++++|+||||.+++ .+.+.++|++
T Consensus 89 ~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~-~~~~lv~~~~~~n~tG~~~~-~~~I~~l~~~ 166 (353)
T TIGR03235 89 KHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIR-PDTLLVSIMHVNNETGSIQP-IREIAEVLEA 166 (353)
T ss_pred CeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC-CCCEEEEEEcccCCceeccC-HHHHHHHHHH
Confidence 7788887666643 33345579999999987778899999999997 68999999999999999964 5667778888
Q ss_pred hC
Q 025730 248 HN 249 (249)
Q Consensus 248 ~~ 249 (249)
+|
T Consensus 167 ~~ 168 (353)
T TIGR03235 167 HE 168 (353)
T ss_pred cC
Confidence 75
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-14 Score=128.34 Aligned_cols=130 Identities=20% Similarity=0.268 Sum_probs=107.6
Q ss_pred HHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHHHHC
Q 025730 113 VREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVN 190 (249)
Q Consensus 113 v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~ 190 (249)
-.+++.+ +..+..|+.+...+|++++++++|.+ +++.++|+++++.+++.++ +++||+|++++++|..+...+...
T Consensus 16 e~~~~~~~l~~~~~~~g~~~~~le~~la~~~g~~--~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~ 93 (379)
T PRK11658 16 ELAAVKEVLRSGWITTGPKNQALEQAFCQLTGNQ--HAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLL 93 (379)
T ss_pred HHHHHHHHHHcCCccCCHhHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHc
Confidence 3445444 43434455567899999999999964 6888999999999999998 899999999999999988888899
Q ss_pred CCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 191 GAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 191 G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|++++.++.+ +++.+|+++++++++ .++|+|+ |+|++|... +.+.+.++|+++|
T Consensus 94 G~~~v~vd~~~~~~~~d~~~l~~~i~-~~tkav~---~~~~~G~~~-d~~~i~~~a~~~g 148 (379)
T PRK11658 94 GATPVMVDVDRDTLMVTPEAIEAAIT-PRTKAII---PVHYAGAPA-DLDAIRAIGERYG 148 (379)
T ss_pred CCEEEEEecCCCcCCcCHHHHHHhcc-cCCeEEE---EeCCCCCcC-CHHHHHHHHHHcC
Confidence 9999999975 346799999999998 6899988 677899984 6677788899875
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-14 Score=130.15 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=98.2
Q ss_pred CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH-----HHCCCEEEEecC
Q 025730 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA-----AVNGAAVVKVPR 199 (249)
Q Consensus 125 ~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~-----~~~G~~v~~v~~ 199 (249)
+|+++...+|++.+|+++|. +.+++++|+++++.+++.+++++||+|+++.|.|..+...+ +..|++++.++.
T Consensus 72 r~~~Pt~~~LE~~lA~l~g~--~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~ 149 (418)
T PLN02242 72 RHFNPTVLNLGRQMAALEGT--EAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDI 149 (418)
T ss_pred CCCChhHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCC
Confidence 34677889999999999995 46788999999999999999999999999999998776554 347888887764
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++..++|+|++++|+||||.+. +.+.+.++|++||
T Consensus 150 -----~d~e~l~~~i~~~~tklV~lesp~NPtG~v~-dl~~I~~la~~~g 193 (418)
T PLN02242 150 -----TDLEAVKKAVVPGKTKVLYFESISNPTLTVA-DIPELARIAHEKG 193 (418)
T ss_pred -----CCHHHHHHhcCcCCCEEEEEecCCCCCCccc-CHHHHHHHHHHhC
Confidence 2899999999733599999999999999996 5667777888875
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.6e-14 Score=127.81 Aligned_cols=116 Identities=19% Similarity=0.227 Sum_probs=98.3
Q ss_pred CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHH----HHHHHCCCEEEEecCC
Q 025730 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE----FDAAVNGAAVVKVPRK 200 (249)
Q Consensus 125 ~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~----~~~~~~G~~v~~v~~~ 200 (249)
+|+++...+|++.+++++|. +++++++|+++++..++.+++++||+|+++.+.|.... ..+...|++++.++.+
T Consensus 57 r~~~p~~~~le~~la~l~g~--~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 134 (390)
T PRK08133 57 RFTNPTVTMFQERLAALEGA--EACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT 134 (390)
T ss_pred CCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC
Confidence 44556688999999999995 46899999999999999999999999999999986432 3456689999999863
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++++++++ +++|+|++++|+||||.+. +.+.+.++|+++|
T Consensus 135 -----d~~~l~~~i~-~~tklV~ie~p~NptG~v~-dl~~I~~la~~~g 176 (390)
T PRK08133 135 -----DLDAWRAAVR-PNTKLFFLETPSNPLTELA-DIAALAEIAHAAG 176 (390)
T ss_pred -----CHHHHHHhcC-cCCeEEEEECCCCCCCCcC-CHHHHHHHHHHcC
Confidence 7899999997 7899999999999999995 5677778898875
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-14 Score=126.69 Aligned_cols=143 Identities=14% Similarity=0.068 Sum_probs=113.8
Q ss_pred CCCCCCHHHHHHHHhccCCCC--CCCcChHHHHHHHHHHcCCCC--CCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCC
Q 025730 105 NPYGPPPEVREALGQLKFPYI--YPDPESRRLRAALAKDSGLES--DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF 180 (249)
Q Consensus 105 ~~~~~p~~v~~al~~~~~~~~--Yp~~g~~~lr~~la~~~~~~~--~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y 180 (249)
-|.++++.+.+++........ |. ....++|+.+++++|.++ +.|+++.|+++++..++..+..+||+|+++.++|
T Consensus 12 gP~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~ 90 (368)
T PRK13479 12 GPLTTSRTVREAMLRDWGSWDDDFN-ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGA 90 (368)
T ss_pred CCCCCCHHHHHHhCCCCCCCChHHH-HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCc
Confidence 456677888888865222111 22 246789999999999865 4588999999999999999999999999988887
Q ss_pred hhH--HHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 181 TMY--EFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 181 ~~~--~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
... ...++..|++++.++.+.++.+|++++++++++ .++++|+++||+||||..+ +.+.+..+|+++|
T Consensus 91 ~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~-~~~~i~~l~~~~~ 161 (368)
T PRK13479 91 YGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILN-PLDEIAAVAKRHG 161 (368)
T ss_pred hHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCcccccc-CHHHHHHHHHHcC
Confidence 644 467788999999999877788999999999863 3567899999999999995 5567777888775
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.8e-14 Score=125.76 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhc------CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCC
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVL------DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFS 204 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~------~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~ 204 (249)
..++++.+++++|++++++++++|+++++..++.++. ++||+|++++++|..|...++..|++++.++.+.++.
T Consensus 61 ~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~ 140 (373)
T TIGR03812 61 EEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYT 140 (373)
T ss_pred HHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCC
Confidence 3679999999999988899999999999988877653 4779999999999999999999999999999877888
Q ss_pred CCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 205 LNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 205 id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|+++++++++ +++..++++.|+||||.+ .+.+.+.++|+++|
T Consensus 141 ~d~~~l~~~l~-~~~~~vv~~~~~~~tG~~-~~~~~i~~l~~~~~ 183 (373)
T TIGR03812 141 VDVKDVEDLID-DNTIGIVGIAGTTELGQI-DDIEELSKIALENG 183 (373)
T ss_pred cCHHHHHHHHh-hCcEEEEEECCCCCCCcc-CCHHHHHHHHHHcC
Confidence 99999999997 456544445589999999 46677778888775
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-14 Score=128.48 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=97.4
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHH----HHHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE----FDAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~----~~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+++++|. +..++++++++++.+++.+++++||+|+++.|+|.... ..+...|+++..++.
T Consensus 59 ~r~~~p~~~~le~~lA~l~g~--~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 136 (398)
T PRK08249 59 SRNTNPTVQAFEEKVRILEGA--EAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET 136 (398)
T ss_pred cCCCChHHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC
Confidence 356777789999999999994 45677777789999999999999999999999998543 345568998887763
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++|+|++++|+||||.+. +.+.+.++|+++|
T Consensus 137 -----~d~e~l~~~i~-~~tklV~ie~p~NPtg~v~-dl~~I~~la~~~g 179 (398)
T PRK08249 137 -----GDHEQIEAEIA-KGCDLLYLETPTNPTLKIV-DIERLAAAAKKVG 179 (398)
T ss_pred -----CCHHHHHHhcC-CCCeEEEEECCCCCCCccC-CHHHHHHHHHHcC
Confidence 58999999997 6899999999999999996 5666778898875
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-14 Score=126.58 Aligned_cols=134 Identities=18% Similarity=0.162 Sum_probs=107.1
Q ss_pred CCHHHHHHHHhccCCCCCC-CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCC---------------e
Q 025730 109 PPPEVREALGQLKFPYIYP-DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGD---------------K 172 (249)
Q Consensus 109 ~p~~v~~al~~~~~~~~Yp-~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd---------------~ 172 (249)
+|+++.+++.+... ..+. +.-..++++.+++++|. +++++++|+++++.+++.+++++|| +
T Consensus 25 ~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~e 101 (363)
T TIGR01437 25 VSDEVADAQKRGAQ-NYFEIKELVNKTGEYIANLLGV--EDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNE 101 (363)
T ss_pred CCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhCC--CeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccce
Confidence 67899999887321 1122 22356778888888885 4799999999999999999999998 9
Q ss_pred EEEcCCCChhH----HHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEE-EcCCCCccccCCChHHHHHHHhhh
Q 025730 173 IVDCPPTFTMY----EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIF-LTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 173 Vlv~~P~y~~~----~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~-l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
|+++.|.|..| .......|++++.++. ++.+|+++++++++ +++++++ +++|+||+|.+. +.+.+.++|++
T Consensus 102 Vi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~-~~t~ai~~v~~~~~~~g~~~-~~~~i~~~a~~ 177 (363)
T TIGR01437 102 VVLPKGHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAIT-EKTAAILYIKSHHCVQKSML-SVEDAAQVAQE 177 (363)
T ss_pred EEEECccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcC-hhceEEEEEecCCCCcCCcC-CHHHHHHHHHH
Confidence 99999888755 5667779999999986 45799999999998 7888766 678999999985 55667889998
Q ss_pred hC
Q 025730 248 HN 249 (249)
Q Consensus 248 ~~ 249 (249)
||
T Consensus 178 ~g 179 (363)
T TIGR01437 178 HN 179 (363)
T ss_pred cC
Confidence 86
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.8e-14 Score=127.04 Aligned_cols=116 Identities=21% Similarity=0.243 Sum_probs=97.4
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++++|+++|.+. .++++|+++++.+++ .++++||+|++++|+|.. +...+...|++++.++.
T Consensus 47 ~r~~~pt~~~le~~la~l~g~~~--~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 123 (366)
T PRK08247 47 SRTGNPTRGVLEQAIADLEGGDQ--GFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT 123 (366)
T ss_pred cCCCCchHHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECC
Confidence 56788889999999999999754 477788889999876 578999999999999974 34445568999999875
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++|+|++++|+||+|.. .+.+.+.++|+++|
T Consensus 124 -----~d~~~l~~~i~-~~tklv~le~P~NP~~~~-~dl~~I~~la~~~g 166 (366)
T PRK08247 124 -----ASLKAIEQAIT-PNTKAIFIETPTNPLMQE-TDIAAIAKIAKKHG 166 (366)
T ss_pred -----CCHHHHHHhcc-cCceEEEEECCCCCCCcH-HHHHHHHHHHHHcC
Confidence 38899999998 689999999999999987 56777888898875
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-14 Score=128.15 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=97.2
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+++++|.+ ..+++++++.++.+++.+++++||+|+++.|+|.. +...+...|+++..++.
T Consensus 60 ~r~~~p~~~~le~~lA~l~g~~--~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 137 (403)
T PRK07503 60 SRISNPTLALLEQRMASLEGGE--AAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDL 137 (403)
T ss_pred eCCCCchHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCC
Confidence 4567778899999999999964 35666677889999999999999999999998863 33345568999999976
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ |+++++++++ +++|+|++++|+||||.+. +.+.+.++|+++|
T Consensus 138 ~-----d~~~l~~~i~-~~tklV~le~p~NPtG~~~-di~~I~~la~~~g 180 (403)
T PRK07503 138 T-----DPAALKAAIS-DKTRMVYFETPANPNMRLV-DIAAVAEIAHGAG 180 (403)
T ss_pred C-----CHHHHHHhcC-ccCcEEEEeCCCCCCCeee-CHHHHHHHHHHcC
Confidence 3 7899999997 6899999999999999995 6677788888875
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.9e-14 Score=127.73 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=97.9
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh----hHHHHHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT----MYEFDAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~----~~~~~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+|+++|.+ ..+++++++.++.+++.+++++||+|+++.|.|. .+...+...|+++..++.
T Consensus 54 ~r~~~p~~~~le~~lA~l~g~~--~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~ 131 (391)
T TIGR01328 54 SRLGNPTVSNLEGRIAFLEGTE--AAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINM 131 (391)
T ss_pred eCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECC
Confidence 5678888899999999999964 4677788888999999999999999999999875 344445568999999986
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ |+++++++++ .++++|++++|+||+|.+. +.+.+.++|+++|
T Consensus 132 ~-----d~e~l~~~i~-~~tklV~le~p~Np~G~v~-dl~~I~~la~~~g 174 (391)
T TIGR01328 132 A-----IPEEVKAHIK-DNTKIVYFETPANPTMKLI-DMERVCRDAHSQG 174 (391)
T ss_pred C-----CHHHHHHhhc-cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcC
Confidence 3 7899999997 6899999999999999995 5666777888875
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=125.16 Aligned_cols=132 Identities=20% Similarity=0.306 Sum_probs=105.8
Q ss_pred HHHHHHHHh-ccCCCCCC-CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHH
Q 025730 111 PEVREALGQ-LKFPYIYP-DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDA 187 (249)
Q Consensus 111 ~~v~~al~~-~~~~~~Yp-~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~ 187 (249)
++..+++.+ +..+..+. .+-..++.+.++++++ .+++++|+|++++|.+++.++ ++|||+|++++++|..+...+
T Consensus 11 ~~e~~a~~~~~~~~~~~~~g~~~~~~e~~la~~~g--~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~ 88 (376)
T TIGR02379 11 GQELEYIAEAISEGKLSGDGPFSRRCETWLENRTG--TKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF 88 (376)
T ss_pred HHHHHHHHHHHHcCCccCCcHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH
Confidence 334555554 33332332 2235778888888887 468999999999999999887 899999999999999988888
Q ss_pred HHCCCEEEEecCCCC-CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 188 AVNGAAVVKVPRKSD-FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 188 ~~~G~~v~~v~~~~~-~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
...|++++.++.+.+ +.+|+++++++++ .++|+|+ |+||+|... +.+.+.++|++||
T Consensus 89 ~~~G~~~v~vd~d~~~~~~d~~~le~~i~-~~tk~Ii---p~~~~G~~~-d~~~I~~la~~~~ 146 (376)
T TIGR02379 89 VLRGAKIVFVDIRPDTMNIDETLIESAIT-HRTKAIV---PVHYAGVAC-DMDTIMALANKHQ 146 (376)
T ss_pred HHcCCEEEEEecCCCcCCCCHHHHHHhcC-cCceEEE---EeCCCCCcc-CHHHHHHHHHHCC
Confidence 899999999997644 7899999999998 6899987 778899985 6667888898875
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=125.85 Aligned_cols=115 Identities=21% Similarity=0.244 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh-hHHHHHHHCCCEEEEecCC--CCCCCCH
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT-MYEFDAAVNGAAVVKVPRK--SDFSLNV 207 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~-~~~~~~~~~G~~v~~v~~~--~~~~id~ 207 (249)
..++++.+|+++|++ .+++++|+++++..++.+++++||+|++..+.|. .| ..++..|++++.++.+ .++.+|+
T Consensus 53 ~~~~~e~lA~~~g~~--~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~-~~~~~~g~~~~~~~~~~~~~~~~d~ 129 (370)
T TIGR02539 53 IHDFLEDLAEFLGMD--EARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSY-VAAERAGLNVKEVPHTGHPEYKVDP 129 (370)
T ss_pred HHHHHHHHHHHhCCC--ceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHH-HHHHHcCCEEEEEecCCcccCCcCH
Confidence 578899999999975 5677899999999999999999999999888854 55 5678899999999964 3588999
Q ss_pred HHHHHhhcc------CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 208 ELIADAVER------EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 208 e~l~~~i~~------~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+++++++++ .++++|++++|+||||.. .+.+.+..+|+++|
T Consensus 130 ~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~-~~l~~i~~la~~~~ 176 (370)
T TIGR02539 130 EGYGEVIEEVEDESGKPPVLALLTHVDGEYGNL-PDAGKVAKVCREKG 176 (370)
T ss_pred HHHHHHHHHhhhccCCCcEEEEEECCCCCCccc-cCHHHHHHHHHHcC
Confidence 999999863 268899999999999998 46667777898875
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=126.82 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=112.9
Q ss_pred CCCCCCCHHHHHHHHhccCCCCCCC--cChHHHHHHHHHHcCCCC-CCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCC
Q 025730 104 ENPYGPPPEVREALGQLKFPYIYPD--PESRRLRAALAKDSGLES-DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF 180 (249)
Q Consensus 104 ~~~~~~p~~v~~al~~~~~~~~Yp~--~g~~~lr~~la~~~~~~~-~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y 180 (249)
-.|...++.+.+++......++.+. .-..++++.+++++|.+. +.+++++|+++++..++..++++||+|++.++.|
T Consensus 15 pGP~~~~~~V~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~ 94 (401)
T PLN02409 15 PGPVNIPERVLRAMNRPNEDHRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQ 94 (401)
T ss_pred CCCCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 4455677889998876222122221 125667788888889865 4678899999999999999999999999999988
Q ss_pred hh--HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc---CCceEEEEcCCCCccccCCChHHHHHHH--hhhhC
Q 025730 181 TM--YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGRFSWTSSWIWGI--SSEHN 249 (249)
Q Consensus 181 ~~--~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~e~i~~i--~~~~~ 249 (249)
.. |...++..|++++.++.+.+..+|++++++++++ +++|+|++++++||||.++ +.+.+..+ |+++|
T Consensus 95 ~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~-~~~~i~~l~~~~~~g 169 (401)
T PLN02409 95 FSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTN-DLAGVRKLLDCAQHP 169 (401)
T ss_pred hhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccC-CHHHHHHHHhhhccC
Confidence 53 4567788999999999766667899999999984 3799999999999999996 56666677 77764
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=126.09 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=95.2
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh-HHHHHH---HCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM-YEFDAA---VNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~-~~~~~~---~~G~~v~~v~~ 199 (249)
.+|+++...+|++++|+++|.+. .+ +++++++++.+++.+++++||+|+++.|+|.. +..... ..|+++..++.
T Consensus 56 ~r~~~p~~~~Le~~lA~~~g~~~-~i-~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~ 133 (388)
T PRK07811 56 ARTGNPTRTALEEQLAALEGGAY-GR-AFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL 133 (388)
T ss_pred cCCCCccHHHHHHHHHHHhCCCc-eE-EeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC
Confidence 45677889999999999999653 34 44566899999999999999999999999984 333332 25888887764
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++|+|++++|+||||.+ .+.+.+..+|+++|
T Consensus 134 -----~d~e~l~~~i~-~~tklV~ie~p~NPtg~~-~dl~~I~~la~~~g 176 (388)
T PRK07811 134 -----SDLDAVRAAIT-PRTKLIWVETPTNPLLSI-TDIAALAELAHDAG 176 (388)
T ss_pred -----CCHHHHHHhcC-cCCeEEEEECCCCCccee-cCHHHHHHHHHHcC
Confidence 48999999998 689999999999999998 56777788898875
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=127.03 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=107.1
Q ss_pred eeeccCCCCCCCCCHHHHHHHHhc--cC-CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeE
Q 025730 97 IVKIDANENPYGPPPEVREALGQL--KF-PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKI 173 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~~--~~-~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~V 173 (249)
.|.++.... ++.+..+.+..... .+ ..+|+++...+|++.+|+++|.+.. +++++++.++..++.+++++||+|
T Consensus 31 pi~~~~~~~-~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~~--~~~~sG~~Ai~~~l~~~l~~Gd~V 107 (398)
T PRK07504 31 ALFLTQGFV-YDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDA--RATASGMAAVTAAILCQVKAGDHV 107 (398)
T ss_pred CeECCCCcc-CCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCee--eEecCHHHHHHHHHHHHhCCCCEE
Confidence 366665433 33444444333211 11 2567888899999999999997643 346677788888888889999999
Q ss_pred EEcCCCChhHHHH----HHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 174 VDCPPTFTMYEFD----AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 174 lv~~P~y~~~~~~----~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+++.|.|..+... +...|++++.++ .+|+++++++++ +++|+|+++||+||||.++ +.+.+.++|+++|
T Consensus 108 l~~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~-~~tklV~lesp~NptG~v~-dl~~I~~la~~~g 180 (398)
T PRK07504 108 VAARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVR-PNTKVFFLESPTNPTLEVI-DIAAVAKIANQAG 180 (398)
T ss_pred EEcCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcC-cCceEEEEECCCCCCcEec-CHHHHHHHHHHcC
Confidence 9999999865433 345799988885 378999999997 7899999999999999996 5667777888875
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=120.83 Aligned_cols=123 Identities=16% Similarity=0.137 Sum_probs=102.9
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--C
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--S 201 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~ 201 (249)
..+|+.-..++++.+|+++|.+ +-+++++|+++++..++.+++++||+|+++.++|......+...|++++.++.+ .
T Consensus 54 l~~~~g~i~~~~~~~A~~~ga~-~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~ 132 (294)
T cd00615 54 LLDPTGPIKEAQELAARAFGAK-HTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNP 132 (294)
T ss_pred CCCCChHHHHHHHHHHHHhCCC-CEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCc
Confidence 3457666889999999999964 345559999999999999999999999999999998888888899999999743 2
Q ss_pred C----CCCCHHHHHHhhcc-CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 202 D----FSLNVELIADAVER-EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 202 ~----~~id~e~l~~~i~~-~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ +.+|++++++++++ .++++|++++| |++|.++ +.+.+.++|+++|
T Consensus 133 ~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~-dl~~I~~~~~~~g 183 (294)
T cd00615 133 YYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICY-NLRKIVEEAHHRG 183 (294)
T ss_pred ccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEec-CHHHHHHHHHhcC
Confidence 2 37899999999963 47899999999 6999996 5677888888875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=125.56 Aligned_cols=117 Identities=15% Similarity=0.209 Sum_probs=98.7
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCC----hhHHHHHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF----TMYEFDAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y----~~~~~~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+|+++|. ++.+++++++.++..++.+++++||+|+++...| ..+...++..|++++.++.
T Consensus 65 ~r~~~p~~~~le~~lA~l~g~--~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~ 142 (403)
T PRK07810 65 SRYGNPTVSMFEERLRLIEGA--EACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG 142 (403)
T ss_pred eCCCCchHHHHHHHHHHHhCC--CcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC
Confidence 567888889999999999994 4677788888999999988999999999887554 4555667778999999974
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++++|++++|+||||.+. +.+.+..+|+++|
T Consensus 143 -----~d~~~l~~ai~-~~tklV~~esp~Nptg~v~-dl~~I~~la~~~g 185 (403)
T PRK07810 143 -----EDLSQWEEALS-VPTQAVFFETPSNPMQSLV-DIAAVSELAHAAG 185 (403)
T ss_pred -----CCHHHHHHhcC-cCceEEEEECCCCCCCeec-CHHHHHHHHHHcC
Confidence 38999999998 6899999999999999995 6777788888875
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-13 Score=120.88 Aligned_cols=148 Identities=19% Similarity=0.218 Sum_probs=112.7
Q ss_pred CCCCeeeccCCCCCCC--CCHHHHHHHHh-ccC-CCC-------CCC-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHH
Q 025730 93 KPEDIVKIDANENPYG--PPPEVREALGQ-LKF-PYI-------YPD-PESRRLRAALAKDSGLESDHILVGCGADELID 160 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~--~p~~v~~al~~-~~~-~~~-------Yp~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~ 160 (249)
.+.++|||+.| ++++ .++.+++++.+ +.. ... |+. ....+++++++++++. +++|++++|+.+.+
T Consensus 14 ~g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-~~~i~~~~G~~~~~- 90 (360)
T TIGR00858 14 DGRRLLNFSSN-DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT-EAALLFSSGYLANV- 90 (360)
T ss_pred CCceEEecccC-CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-CCEEEECchHHHHH-
Confidence 45678999998 4544 45888888875 321 111 111 1256799999999984 56888888865555
Q ss_pred HHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc---CCceEEEEcCCCCccccCCCh
Q 025730 161 LIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 161 ~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~ 237 (249)
.++.+++++||+|+++.|+|..+...++..|++++.++. +|++.+++.+++ .++++|++++++||||... +
T Consensus 91 ~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~-~ 164 (360)
T TIGR00858 91 GVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIA-P 164 (360)
T ss_pred HHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCc-C
Confidence 567778899999999999999999888999999988863 588999998864 2478888889999999885 5
Q ss_pred HHHHHHHhhhhC
Q 025730 238 SSWIWGISSEHN 249 (249)
Q Consensus 238 ~e~i~~i~~~~~ 249 (249)
.+.+.++|+++|
T Consensus 165 ~~~i~~l~~~~~ 176 (360)
T TIGR00858 165 LPQLVALAERYG 176 (360)
T ss_pred HHHHHHHHHHcC
Confidence 566777888875
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-13 Score=121.05 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=111.8
Q ss_pred CCCCCHHHHHHHHh-ccCC-CCCCCcChHHHHHHHHHHcCCCCC--CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCC-C
Q 025730 106 PYGPPPEVREALGQ-LKFP-YIYPDPESRRLRAALAKDSGLESD--HILVGCGADELIDLIMRCVLDPGDKIVDCPPT-F 180 (249)
Q Consensus 106 ~~~~p~~v~~al~~-~~~~-~~Yp~~g~~~lr~~la~~~~~~~~--~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~-y 180 (249)
|..+++.+.+++.. .... ..|+ ....++|+.+++++|++++ .|+++.|+++++..++..++.+||++++..+. |
T Consensus 7 p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~ 85 (355)
T TIGR03301 7 PLSTSATVRDAMLVDWCHWDSEFN-DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAY 85 (355)
T ss_pred CCCCCHHHHHHhhhhccCCCHHHH-HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCch
Confidence 55677888888876 2111 1233 2367899999999998765 57789999999999999999888887766555 5
Q ss_pred hh-HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 181 TM-YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 181 ~~-~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.. +...++..|.+++.++.++++.+|++++++++++ .+++++++++++||||.+. +.+.+..+|++||
T Consensus 86 ~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~-~~~~i~~l~~~~~ 155 (355)
T TIGR03301 86 GERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILN-PLEAIAKVARSHG 155 (355)
T ss_pred hhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchh-HHHHHHHHHHHcC
Confidence 43 5667788999999999877789999999999863 3567888899999999995 5677888888875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-13 Score=122.56 Aligned_cols=136 Identities=17% Similarity=0.147 Sum_probs=105.4
Q ss_pred CCCCCCHHHHHHHHh-ccCCCCCC---CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCC
Q 025730 105 NPYGPPPEVREALGQ-LKFPYIYP---DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF 180 (249)
Q Consensus 105 ~~~~~p~~v~~al~~-~~~~~~Yp---~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y 180 (249)
..++.++.+.++... ....+.|. +++...|++++|++.+ .+++++++|+++++..++.+++++||+|++++|.|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~--~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y 110 (394)
T PRK09028 33 VVFDTVAEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEG--GAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCY 110 (394)
T ss_pred cccCCHHHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 345556666665543 21224453 3456799999999986 35799999999999999999999999999999999
Q ss_pred hhHHHHH----HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 181 TMYEFDA----AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 181 ~~~~~~~----~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
..+...+ ...|+++..++.. |.+.++++++ +++|+|++++|+||||.+ .+.+.+.++|+++|
T Consensus 111 ~~t~~l~~~~l~~~Gi~v~~v~~~-----~~e~l~~~l~-~~TklV~lespsNPtg~v-~dl~~I~~la~~~g 176 (394)
T PRK09028 111 EPTRDLCDKILKGFGIETTYYDPM-----IGEGIRELIR-PNTKVLFLESPGSITMEV-QDVPTLSRIAHEHD 176 (394)
T ss_pred HHHHHHHHHhhhhcceEEEEECCC-----CHHHHHHhcC-cCceEEEEECCCCCCCcH-HHHHHHHHHHHHcC
Confidence 7665433 4478888877642 4578988887 789999999999999999 56777888898875
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=123.60 Aligned_cols=117 Identities=18% Similarity=0.248 Sum_probs=100.0
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+++++|. +.+++++++++++..++.+++++||+|+++.+.|.. +...++..|+++..++.
T Consensus 49 ~r~~~p~~~~le~~la~l~g~--~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 49 SRYANPTVAAFEERIAALEGA--ERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred ecCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECC
Confidence 567777889999999999986 567889999999999999999999999999988853 44456678999999976
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ |+++++++++ .++|+|++++|+||+|.+. +.+.+.++|+++|
T Consensus 127 ~-----d~~~l~~~i~-~~tklV~le~p~np~g~~~-dl~~I~~la~~~g 169 (380)
T TIGR01325 127 T-----DLNAWEAAVK-PNTKLVFVETPSNPLGELV-DIAALAELAHAIG 169 (380)
T ss_pred C-----CHHHHHHhcC-CCceEEEEECCCCCCCeee-CHHHHHHHHHHcC
Confidence 3 7899999987 6899999999999999995 6677788888875
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-13 Score=123.93 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=98.9
Q ss_pred CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHH----HHHCCCEEEEecCCCCC
Q 025730 128 DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD----AAVNGAAVVKVPRKSDF 203 (249)
Q Consensus 128 ~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~----~~~~G~~v~~v~~~~~~ 203 (249)
.+....|++.++++.|. ...+++++++.+|.+++.+++++||+|+++.++|...... ....|+++..++.
T Consensus 60 nPtv~~lE~~la~leg~--~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~---- 133 (432)
T PRK06702 60 NPTLAAFEQKLAELEGG--VGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP---- 133 (432)
T ss_pred CcHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC----
Confidence 56688999999999984 4688899999999999999999999999999999754443 5668999999853
Q ss_pred CCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 204 SLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 204 ~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+|+++++++++ +++|+|++.+|+||+|.+. +.+.+.++|++||
T Consensus 134 ~~d~~~l~~~I~-~~Tk~I~~e~pgnP~~~v~-Di~~I~~iA~~~g 177 (432)
T PRK06702 134 NLTADEIVALAN-DKTKLVYAESLGNPAMNVL-NFKEFSDAAKELE 177 (432)
T ss_pred CCCHHHHHHhCC-cCCeEEEEEcCCCcccccc-CHHHHHHHHHHcC
Confidence 478999999998 7999999999999999995 6788888999886
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-13 Score=120.30 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=111.3
Q ss_pred CCHHHHHHHHh-cc----CCCCCCCcC--hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcC----CCCeEEEcC
Q 025730 109 PPPEVREALGQ-LK----FPYIYPDPE--SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLD----PGDKIVDCP 177 (249)
Q Consensus 109 ~p~~v~~al~~-~~----~~~~Yp~~g--~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~----pGd~Vlv~~ 177 (249)
+.+.+.+++.+ .. ....|+... ..++++.+++++|++.+++++++|+++++..++..+.. +||+|++.+
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~ 111 (371)
T PRK13520 32 PHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPE 111 (371)
T ss_pred chHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecC
Confidence 44666677654 21 112233221 26799999999998877899999999999998876643 579999999
Q ss_pred CCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 178 PTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 178 P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++|..+...++..|++++.++.++++.+|+++++++++ +++++|++++++|+||.+. +.+.+..+|+++|
T Consensus 112 ~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~~vi~~~~~~~tG~~~-~l~~I~~l~~~~g 181 (371)
T PRK13520 112 SAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLID-DNTIGIVGIAGTTELGQVD-PIPELSKIALENG 181 (371)
T ss_pred cchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHh-hCCEEEEEEcCCcCCcccC-CHHHHHHHHHHcC
Confidence 99999988888899999999987778899999999997 5788888889999999995 6777888898875
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-13 Score=124.56 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=99.9
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+|+++|. +..++++++++++..++.+++++||+|++..+.|.. |...+...|++++.++.
T Consensus 52 sr~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 52 SRLMNPTTDVLEQRIAALEGG--VAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred ECCCChhHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 566777789999999999995 467888999999999999999999999999999853 34456678999999985
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ |+++++++++ .++++|++++|+||||.+. +.+.+.++|+++|
T Consensus 130 ~-----d~~~l~~~l~-~~t~~V~le~p~NPtg~v~-dl~~I~~la~~~~ 172 (418)
T TIGR01326 130 D-----DPEEFEKAID-ENTKAVFAETIGNPAINVP-DIEAIAEVAHAHG 172 (418)
T ss_pred C-----CHHHHHHhcC-cCCeEEEEECCCCCCCeec-CHHHHHHHHHHcC
Confidence 2 8999999997 6899999999999999995 5677778898875
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-13 Score=122.53 Aligned_cols=117 Identities=21% Similarity=0.147 Sum_probs=97.0
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH---HHCCCEEEEecCC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA---AVNGAAVVKVPRK 200 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~---~~~G~~v~~v~~~ 200 (249)
.+|+++...+|++.+|+++|. +++++++|++.++..++.+++++||+|+++.|.|..+...+ ...|+++..+.
T Consensus 48 ~r~~np~~~~lE~~lA~l~g~--~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~-- 123 (385)
T PRK08574 48 SREENPTLRPLEEALAKLEGG--VDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY-- 123 (385)
T ss_pred ECCCCccHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC--
Confidence 355677889999999999994 57888899999999999999999999999999998766554 44688777653
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|++++++++++.++|+|++++|+||||.+++ .+.+.++|+++|
T Consensus 124 ----~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d-l~~I~~la~~~g 167 (385)
T PRK08574 124 ----PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID-VPEVAKAAKELG 167 (385)
T ss_pred ----CCHHHHHHhcCccCceEEEEECCCCCCCEecC-HHHHHHHHHHcC
Confidence 36899999997338999999999999999965 556777888875
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.5e-13 Score=122.66 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=97.9
Q ss_pred CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecCC
Q 025730 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPRK 200 (249)
Q Consensus 125 ~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~~ 200 (249)
+++++....|.+.++++.| .++.++++|++.++..++..++++||+|+++.+.|.. +...++..|++++.++.
T Consensus 60 r~~~p~~~~Le~~lA~leg--~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~- 136 (431)
T PRK08248 60 RIMNPTTDVFEKRIAALEG--GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP- 136 (431)
T ss_pred CCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC-
Confidence 3456678899999999999 4577888999999999999999999999999998863 34456679999999975
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++++|++++|+||||.++ +.+.+.++|+++|
T Consensus 137 ----~d~e~l~~ai~-~~tklV~l~sp~NPtG~v~-di~~I~~la~~~g 179 (431)
T PRK08248 137 ----SDPENFEAAIT-DKTKALFAETIGNPKGDVL-DIEAVAAIAHEHG 179 (431)
T ss_pred ----CCHHHHHHhcC-CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcC
Confidence 38899999998 6899999999999999996 4567778888875
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=122.21 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=90.1
Q ss_pred CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCC----hhHHHHHHHCCCEEEEecCC
Q 025730 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF----TMYEFDAAVNGAAVVKVPRK 200 (249)
Q Consensus 125 ~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y----~~~~~~~~~~G~~v~~v~~~ 200 (249)
++.++...+|++++|+++|.+. .+++++ +++++..++.+++++||+|+++.|.| ..|...++..|+++..++.+
T Consensus 41 r~~~p~~~~L~~~lA~l~g~~~-~v~~~s-G~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~ 118 (376)
T PRK06460 41 REANPTVLELTKKIVELENAEM-GVAFSS-GMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPG 118 (376)
T ss_pred CCCCccHHHHHHHHHHHhCCCc-EEEeCC-HHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCC
Confidence 3356778999999999999754 455544 46899999999999999999997654 46667778899999988753
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ .+.+++.++ +++|+|+++|||||||.+++. +.+.++|+++|
T Consensus 119 ~-----~~~l~~~~~-~~tklV~l~sp~NPtG~v~d~-~~I~~la~~~g 160 (376)
T PRK06460 119 S-----DNIIEKAKS-KRYDVVFVENITNPLLRVVDI-TELSKVCKENG 160 (376)
T ss_pred C-----HHHHHHhcC-CCceEEEEECCCCCCCcccCH-HHHHHHHHHcC
Confidence 2 234444444 689999999999999999655 55677888875
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=122.57 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=92.2
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHH----HHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD----AAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~----~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+|+++|.+ +.+++ ++++.++..++.+++++||+|+++.|.|...... ....|+++..++.
T Consensus 56 ~r~~~pt~~~Le~~lA~l~G~~-~al~~-~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~ 133 (386)
T PRK06767 56 SRLGNPTVKLFEERMAVLEGGE-EALAF-GSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM 133 (386)
T ss_pred cCCCCcchHHHHHHHHHHhCCC-cEEEE-CCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC
Confidence 5678888899999999999953 44444 5556799999999999999999999988744333 3345666666543
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++|+|++++|+||||.++ +.+.+..+|+++|
T Consensus 134 -----~d~~~l~~~i~-~~tklV~lesp~NptG~v~-dl~~I~~la~~~g 176 (386)
T PRK06767 134 -----ETEADIENKIR-PNTKLIFVETPINPTMKLI-DLKQVIRVAKRNG 176 (386)
T ss_pred -----CCHHHHHHhhC-cCceEEEEeCCCCCCceec-CHHHHHHHHHHcC
Confidence 37899999997 6899999999999999996 4566777888775
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-13 Score=122.18 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=91.8
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh-hH---HHHHHHCCCEEEEecCCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT-MY---EFDAAVNGAAVVKVPRKSD 202 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~-~~---~~~~~~~G~~v~~v~~~~~ 202 (249)
.++...+|++.+|+++|.+ +.+++++| +.++.+++. ++++||+|+++.|.|. .| ...++..|++++.++..
T Consensus 52 ~~p~~~~le~~lA~l~g~~-~~v~~~sG-~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-- 126 (390)
T PRK08064 52 GNPTREALEDIIAELEGGT-KGFAFASG-MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT-- 126 (390)
T ss_pred CChhHHHHHHHHHHHhCCC-CeEEECCH-HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC--
Confidence 3456789999999999976 46666666 568888876 7899999999999996 33 34456689999999863
Q ss_pred CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 ~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++++++++ +++|+|++++|+||||.+. +.+.+.++|+++|
T Consensus 127 ---d~~~l~~~l~-~~tklV~l~~p~NptG~~~-dl~~I~~la~~~g 168 (390)
T PRK08064 127 ---NLEEVAQNIK-PNTKLFYVETPSNPLLKVT-DIRGVVKLAKAIG 168 (390)
T ss_pred ---CHHHHHHhcC-CCceEEEEECCCCCCcEec-cHHHHHHHHHHcC
Confidence 7899999997 6899999999999999995 6667778888875
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=118.92 Aligned_cols=129 Identities=20% Similarity=0.283 Sum_probs=103.2
Q ss_pred HHHHHh-ccCCCCCCCcC-hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHHHHC
Q 025730 114 REALGQ-LKFPYIYPDPE-SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVN 190 (249)
Q Consensus 114 ~~al~~-~~~~~~Yp~~g-~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~ 190 (249)
.+++.+ +..+..|+... ..++.+.+++++|. +++++++|++++|.+++..+ +++||+|+++.|+|..+...+...
T Consensus 14 ~~~~~~~l~~~~~~g~~~~~~~~e~~la~~~g~--~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~ 91 (375)
T PRK11706 14 LDYIQQAMSSGKLCGDGGFTRRCQQWLEQRFGS--AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLR 91 (375)
T ss_pred HHHHHHHHHcCCccCCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHc
Confidence 444444 34444555433 46778888988885 68999999999999987765 789999999999999999999999
Q ss_pred CCEEEEecCCCC-CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 191 GAAVVKVPRKSD-FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 191 G~~v~~v~~~~~-~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|++++.++.+.+ +.+|+++++++++ .++|+|+++ |++|.. .+.+.+.++|+++|
T Consensus 92 G~~~v~~d~d~~~~~~d~~~le~~i~-~~tk~i~~~---~~~G~~-~~~~~i~~la~~~~ 146 (375)
T PRK11706 92 GAKIVFVDIRPDTMNIDETLIEAAIT-PKTRAIVPV---HYAGVA-CEMDTIMALAKKHN 146 (375)
T ss_pred CCEEEEEecCCCcCCcCHHHHHHhcC-CCCeEEEEe---CCCCCc-cCHHHHHHHHHHcC
Confidence 999999997544 6799999999998 689999976 469988 45667788888875
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=118.63 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=114.5
Q ss_pred CCCCeeeccCCC-CCCCCCHHHHHHHHh-cc-CCCCCCC----cCh----HHHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANE-NPYGPPPEVREALGQ-LK-FPYIYPD----PES----RRLRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~-~~~~~p~~v~~al~~-~~-~~~~Yp~----~g~----~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
.+.++|+|..++ +.+++++.+.+++.+ +. ....|+. .|. .++++.++++++.+ ++|++|+| ++++..
T Consensus 40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~-~~i~~tsG-~~a~~~ 117 (397)
T PRK06939 40 DGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTE-DAILYSSC-FDANGG 117 (397)
T ss_pred CCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCC-cEEEEcCh-HHHHHH
Confidence 345789999987 577788888888765 32 2233321 243 45667777777864 67888888 678888
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc---C--CceEEEEcCCCCccccCCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---E--KPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~---~--~~k~i~l~~PnNPTG~~~~ 236 (249)
+++++++|||+|++++|+|..+...++..|++++.++. .|++++++.+++ . ++++|++.+.+|+||.. .
T Consensus 118 ~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~-~ 191 (397)
T PRK06939 118 LFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDI-A 191 (397)
T ss_pred HHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCc-C
Confidence 89999999999999999999998888889999888764 478888887753 2 67788877789999987 5
Q ss_pred hHHHHHHHhhhhC
Q 025730 237 TSSWIWGISSEHN 249 (249)
Q Consensus 237 ~~e~i~~i~~~~~ 249 (249)
+.+.+.++|++||
T Consensus 192 ~~~~l~~la~~~~ 204 (397)
T PRK06939 192 PLPEICDLADKYD 204 (397)
T ss_pred CHHHHHHHHHHhC
Confidence 6677888899875
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-13 Score=120.82 Aligned_cols=116 Identities=21% Similarity=0.267 Sum_probs=92.9
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh-hHHHH---HHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT-MYEFD---AAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~-~~~~~---~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+++++|.+ ..+++++| +.++..++ .++++||+|+++.|+|. .|... +...|++++.++.
T Consensus 45 ~r~~~p~~~~Le~~lA~l~g~~-~~~~~~sG-~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 121 (377)
T PRK07671 45 SRTGNPTRAALEELIAVLEGGH-AGFAFGSG-MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT 121 (377)
T ss_pred CCCCChHHHHHHHHHHHHhCCC-ceEEeCCH-HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC
Confidence 4567777899999999999964 35666666 56777665 57899999999999997 55443 3447999999874
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++|+|++++|+||||.+ .+.+.+.++|+++|
T Consensus 122 -----~d~~~l~~ai~-~~tklV~le~P~NPtg~~-~dl~~I~~la~~~g 164 (377)
T PRK07671 122 -----SNLEEVEEAIR-PNTKAIYVETPTNPLLKI-TDIKKISTIAKEKG 164 (377)
T ss_pred -----CCHHHHHHhcC-CCCeEEEEECCCCCCCcc-cCHHHHHHHHHHcC
Confidence 38999999998 689999999999999998 46677777888875
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=120.69 Aligned_cols=113 Identities=24% Similarity=0.326 Sum_probs=93.8
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH----HHHHCCCEEEEecCCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF----DAAVNGAAVVKVPRKSD 202 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~----~~~~~G~~v~~v~~~~~ 202 (249)
+.+...+|++.+++++|. ++++++++++.++.+++. ++++||+|+++++.|..+.. .+...|++++.++..
T Consensus 45 ~~p~~~~le~~la~l~g~--~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-- 119 (378)
T TIGR01329 45 GNPTRTALESLLAKLDKA--DRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT-- 119 (378)
T ss_pred CChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC--
Confidence 344578899999999996 566777777889998776 78999999999999986543 345589999999862
Q ss_pred CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 ~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++++++++ +++|+|++++|+||||.+. +.+.+.++|+++|
T Consensus 120 ---d~~~le~~i~-~~tklv~le~psnptg~v~-dl~~I~~la~~~g 161 (378)
T TIGR01329 120 ---DLDKVKAALG-PKTKLVLLESPTNPLQKIV-DIRKISEMAHAQN 161 (378)
T ss_pred ---CHHHHHHhcC-cCceEEEEECCCCCCCeee-cHHHHHHHHHHcC
Confidence 7899999998 7899999999999999995 6777788898875
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=104.58 Aligned_cols=118 Identities=18% Similarity=0.148 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHH-HHHHHCCCEEEEecCCCCCCCC--H
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE-FDAAVNGAAVVKVPRKSDFSLN--V 207 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~-~~~~~~G~~v~~v~~~~~~~id--~ 207 (249)
..++++.++++++.+.+++++++|+++++.++++++.++|++|+++.++|.... ..++..|+++..++.+.+...+ +
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~ 81 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDV 81 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCccchhh
Confidence 468999999999766889999999999999999999888999999999998766 7778899999999865443333 3
Q ss_pred HHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 208 ELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 208 e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.+++.....+++++++++++||+|..++. +.+.++|+++|
T Consensus 82 ~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~-~~l~~~~~~~~ 122 (170)
T cd01494 82 AILEELKAKPNVALIVITPNTTSGGVLVPL-KEIRKIAKEYG 122 (170)
T ss_pred hhhhhccccCceEEEEEecCcCCCCeEcCH-HHHHHHHHHcC
Confidence 366555544789999999999999998644 67777888775
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.1e-13 Score=119.37 Aligned_cols=142 Identities=13% Similarity=0.017 Sum_probs=110.0
Q ss_pred CCCCCHHHHHHHHhccCCCCCCC--cChHHHHHHHHHHcCCCCC--CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh
Q 025730 106 PYGPPPEVREALGQLKFPYIYPD--PESRRLRAALAKDSGLESD--HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT 181 (249)
Q Consensus 106 ~~~~p~~v~~al~~~~~~~~Yp~--~g~~~lr~~la~~~~~~~~--~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~ 181 (249)
|...++.+.+++.... .++-+. .-..++|+.+++++|.+++ .|++|.|+++++..++.+++.+||++++..+.+.
T Consensus 11 p~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~ 89 (363)
T TIGR02326 11 PLTTSRTVKEAMLFDW-CTWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAY 89 (363)
T ss_pred CCCCCHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChh
Confidence 4445677777776521 121111 1256789999999999764 6999999999999999999999998887666654
Q ss_pred hH--HHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 182 MY--EFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 182 ~~--~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.. ...++..|.+++.++.++++.+|+++++++++. .+++++++++++||||..+ +.+.+.++|++||
T Consensus 90 ~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~-~i~~I~~l~~~~g 159 (363)
T TIGR02326 90 GARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILN-PIEAVAKLAHRHG 159 (363)
T ss_pred hHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccC-cHHHHHHHHHHcC
Confidence 33 466788999999999877888999999999874 3567888999999999996 5677888888875
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=118.94 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=93.2
Q ss_pred CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHH---HHHHHCCCEEEEecCCCCCC
Q 025730 128 DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE---FDAAVNGAAVVKVPRKSDFS 204 (249)
Q Consensus 128 ~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~---~~~~~~G~~v~~v~~~~~~~ 204 (249)
++...+|++.++++.|.. ..+++++++.++..++.+++++||+|+++++.|+.+. ..++..|++++.++.
T Consensus 46 ~p~~~~lE~~la~leg~~--~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~----- 118 (397)
T PRK05939 46 TPTTAALEAKITKMEGGV--GTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDA----- 118 (397)
T ss_pred CHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECC-----
Confidence 344668999999999853 3455555689999999999999999999999997432 345568999999975
Q ss_pred CCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 205 LNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 205 id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++|+|++++|+||||.+ .+.+.+..+|+++|
T Consensus 119 ~d~e~l~~~l~-~~tklV~vesp~NptG~v-~dl~~I~~la~~~g 161 (397)
T PRK05939 119 TDVQNVAAAIR-PNTRMVFVETIANPGTQV-ADLAGIGALCRERG 161 (397)
T ss_pred CCHHHHHHhCC-CCCeEEEEECCCCCCCCH-HhHHHHHHHHHHcC
Confidence 27899999997 789999999999999999 57777888999875
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-13 Score=122.39 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=92.4
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCE-EEEecCCCC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAA-VVKVPRKSD 202 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~-v~~v~~~~~ 202 (249)
.+|+++...+|++++|++.+ .+++++++|+++++.+++. ++++||+|+++.+.|......+...... -+.+ .
T Consensus 49 ~R~~~p~~~~le~~lA~leg--~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~----~ 121 (364)
T PRK07269 49 TRTKNPTRAKLEETLAAIES--ADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHF----T 121 (364)
T ss_pred eCCCCccHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcCcEEE----E
Confidence 56788889999999999998 6799999999999999995 6799999999999997433332221000 0111 2
Q ss_pred CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 ~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+..|+++++++++ +++|+|++++|+||||.+. +.+.+.++|+++|
T Consensus 122 ~~~d~~~l~~~i~-~~TklV~lesP~NPtg~~~-di~~I~~la~~~g 166 (364)
T PRK07269 122 YANTEEELIAAIE-EDTDIVYIETPTNPLMVEF-DIEKVAKLAHAKG 166 (364)
T ss_pred ecCCHHHHHHhcC-cCceEEEEECCCCCCCeee-CHHHHHHHHHHcC
Confidence 3468999999998 6899999999999999984 6777778888875
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.8e-13 Score=120.17 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=89.6
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH----HHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~ 199 (249)
.+||++...+|++++++++ ..+ .+++.++++++..++.+++++||+|++++|+|..+...+ ...|++++.++.
T Consensus 46 ~ry~~p~~~~Le~~lA~l~--~~~-~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 122 (366)
T PRK07582 46 GRASNPTWRALEAALGELE--GAE-ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPT 122 (366)
T ss_pred ECCCCccHHHHHHHHHHHc--CCC-EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECC
Confidence 6789999999999999999 344 455555567999999999999999999999998776644 347999999986
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++++ + .+. .++++|++++|+||||.+. +.+.+.++|+++|
T Consensus 123 ~~~~----~----~~~-~~t~lV~le~p~NPtg~v~-di~~I~~~a~~~g 162 (366)
T PRK07582 123 AGMA----E----AAL-AGADLVLAETPSNPGLDVC-DLAALAAAAHAAG 162 (366)
T ss_pred CChH----H----Hhc-cCceEEEEECCCCCCCCcc-CHHHHHHHHHHcC
Confidence 4321 1 222 5789999999999999884 6677788888765
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=116.19 Aligned_cols=149 Identities=16% Similarity=0.133 Sum_probs=110.2
Q ss_pred CCCCeeeccCCCCC-CCCCHHHHHHHHh-ccC-CC---CC-----CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANENP-YGPPPEVREALGQ-LKF-PY---IY-----PDPESRRLRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~~-~~~p~~v~~al~~-~~~-~~---~Y-----p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
.+.++|||..+++. +.+++.+.+++.+ +.. .. .| +.....+++++++++++. ++.|++++ +++++..
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-~~~i~~~~-g~~~~~~ 114 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGA-ERALLFSS-GYAANLA 114 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-CcEEEECc-HHHHHHH
Confidence 35678999999763 4567888888875 321 11 11 122357899999999983 44555554 5566666
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC--CceEEEEcCCCCccccCCChHH
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE--KPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~--~~k~i~l~~PnNPTG~~~~~~e 239 (249)
++..++++||+|++++|+|..+...+...|.+++.++. .|++.+++.++.. ++.++++.+++||||.. .+.+
T Consensus 115 ~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~-~~l~ 188 (385)
T PRK05958 115 VLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-----NDVDALEALLAKWRAGRALIVTESVFSMDGDL-APLA 188 (385)
T ss_pred HHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhccCCCeEEEEEecccCCCCc-CCHH
Confidence 77888999999999999999999888889999988874 3789999988642 35566666789999988 4567
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+.++|++||
T Consensus 189 ~i~~ia~~~~ 198 (385)
T PRK05958 189 ELVALARRHG 198 (385)
T ss_pred HHHHHHHHhC
Confidence 7888999875
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=117.45 Aligned_cols=117 Identities=20% Similarity=0.221 Sum_probs=98.5
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFS 204 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~ 204 (249)
..+...+|++++++++|.+ +.++++|+++++.+++.++ +++||+|+++.|+|..+...++..|++++.++.+ +++.
T Consensus 27 ~g~~~~~le~~la~~~g~~--~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 104 (380)
T TIGR03588 27 QGPTVPAFEEALAEYVGAK--YAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGN 104 (380)
T ss_pred CChhHHHHHHHHHHHHCCC--eEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCC
Confidence 3456789999999999963 5667778999999999998 8899999999999999988888999999999974 4678
Q ss_pred CCHHHHHHhhcc---CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 205 LNVELIADAVER---EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 205 id~e~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|++++++++++ .++++|++ +|++|.. .+.+.+.++|++||
T Consensus 105 ~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~-~~~~~i~~l~~~~~ 148 (380)
T TIGR03588 105 IDEDALEKKLAAAKGKLPKAIVP---VDFAGKS-VDMQAIAALAKKHG 148 (380)
T ss_pred cCHHHHHHHhhcccCCCceEEEE---eCCCCcc-CCHHHHHHHHHHcC
Confidence 999999999973 47899885 4568988 45677788898875
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=116.11 Aligned_cols=137 Identities=18% Similarity=0.146 Sum_probs=105.6
Q ss_pred HHHHHHHh-cc-CCCCCC-CcChHHHHHHHHHH----cCCC--CCCEEEeCCHHHHHHHHHHHhcC------------CC
Q 025730 112 EVREALGQ-LK-FPYIYP-DPESRRLRAALAKD----SGLE--SDHILVGCGADELIDLIMRCVLD------------PG 170 (249)
Q Consensus 112 ~v~~al~~-~~-~~~~Yp-~~g~~~lr~~la~~----~~~~--~~~I~vt~Ga~~~l~~~~~~~~~------------pG 170 (249)
.+.+.+.. .. ....|. .++..+++++++++ +|++ .+++++|+|+++++.+++.++.. +|
T Consensus 14 ~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~ 93 (345)
T cd06450 14 LLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGI 93 (345)
T ss_pred HHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhccccccc
Confidence 34444543 22 223463 45666777776555 4774 45899999999999999988742 33
Q ss_pred --CeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-----CCceEEEEcCCCCccccCCChHHHHHH
Q 025730 171 --DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-----EKPKCIFLTSPNNPDGRFSWTSSWIWG 243 (249)
Q Consensus 171 --d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-----~~~k~i~l~~PnNPTG~~~~~~e~i~~ 243 (249)
+.|++++++|..+...+...|.+++.++.++++.+|++++++++++ .++++|++++|+||||.+ .+.+.+.+
T Consensus 94 ~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~-~~~~~i~~ 172 (345)
T cd06450 94 DKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAI-DPLEEIAD 172 (345)
T ss_pred CCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCC-CCHHHHHH
Confidence 4788999999999888888899999999877778999999999973 168899999999999998 56777888
Q ss_pred HhhhhC
Q 025730 244 ISSEHN 249 (249)
Q Consensus 244 i~~~~~ 249 (249)
+|+++|
T Consensus 173 ~~~~~~ 178 (345)
T cd06450 173 LAEKYD 178 (345)
T ss_pred HHHHhC
Confidence 999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=118.41 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=96.0
Q ss_pred CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHH----HHHCCCEEEEecCCC
Q 025730 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD----AAVNGAAVVKVPRKS 201 (249)
Q Consensus 126 Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~----~~~~G~~v~~v~~~~ 201 (249)
+.++....|++.+|++.| .+++++++|+++++..++.+++++||+|++++|.|..+... ....|+++..++..
T Consensus 47 ~gnPt~~~lE~~lA~l~g--~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~- 123 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEG--GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL- 123 (377)
T ss_pred CCCccHHHHHHHHHHHhC--CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC-
Confidence 345567899999999999 45899999999999999999999999999999999865543 34578888877532
Q ss_pred CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 202 ~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.+.++++++ +++|+|++++|+||+|.+ .+.+.+.++|+++|
T Consensus 124 ----~~e~l~~~i~-~~tklV~lesp~Np~g~~-~dl~~I~~la~~~g 165 (377)
T TIGR01324 124 ----IGEDIATLIQ-PNTKVLFLEAPSSITFEI-QDIPAIAKAARNPG 165 (377)
T ss_pred ----CHHHHHHhcC-CCceEEEEECCCCCCCcH-HHHHHHHHHHHHcC
Confidence 2378988887 789999999999999999 57777888899875
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=115.20 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=106.5
Q ss_pred eeeccCCCCC-CCCCHHHHHHHHh-ccC-CCC---CC-----CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 97 IVKIDANENP-YGPPPEVREALGQ-LKF-PYI---YP-----DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 97 ~I~L~~~~~~-~~~p~~v~~al~~-~~~-~~~---Yp-----~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
+++|+.++-. ...++++.+++.+ +.. ... |+ .+...++++.++++++.+ + .++++++++++..++++
T Consensus 3 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~-~iv~~sg~~a~~~~~~~ 80 (349)
T cd06454 3 VLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKE-A-ALVFSSGYAANDGVLST 80 (349)
T ss_pred ceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCC-C-EEEeccHHHHHHHHHHH
Confidence 3455554432 2235788888876 321 111 21 123578999999999964 3 45555567788888888
Q ss_pred hcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc----CCceEEEEcCCCCccccCCChHHHH
Q 025730 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER----EKPKCIFLTSPNNPDGRFSWTSSWI 241 (249)
Q Consensus 166 ~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~----~~~k~i~l~~PnNPTG~~~~~~e~i 241 (249)
++++||+|+++.|+|..+...++..|++++.++. +|++++++.+++ .+++++++++|+||||... +.+.+
T Consensus 81 ~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~-~~~~i 154 (349)
T cd06454 81 LAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIA-PLPEL 154 (349)
T ss_pred hcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCcc-CHHHH
Confidence 8899999999999999888888889999988863 477888888764 3578888899999999884 56777
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|+++|
T Consensus 155 ~~~~~~~~ 162 (349)
T cd06454 155 VDLAKKYG 162 (349)
T ss_pred HHHHHHcC
Confidence 88899875
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.4e-12 Score=117.24 Aligned_cols=113 Identities=20% Similarity=0.270 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh---------cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC
Q 025730 130 ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV---------LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK 200 (249)
Q Consensus 130 g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~---------~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~ 200 (249)
...+|+++++++++. +++++++|+++++.+++.++ ++|||+|+++.++|..+...+...|++++.++.+
T Consensus 64 ~~~~fe~~lA~~~g~--~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd 141 (438)
T PRK15407 64 FNDAFEKKLAEFLGV--RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE 141 (438)
T ss_pred hHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 368899999999996 47899999999999988865 4899999999999999999999999999999965
Q ss_pred -CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 201 -SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 201 -~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+++.+|++.++++++ .++|+|+++|+ +|.. .+.+.+..+|++||
T Consensus 142 ~~~~~id~~~le~~i~-~~tkaVi~~~~---~G~p-~dl~~I~~la~~~g 186 (438)
T PRK15407 142 LPTYNIDASLLEAAVS-PKTKAIMIAHT---LGNP-FDLAAVKAFCDKHN 186 (438)
T ss_pred CCcCCcCHHHHHHHcC-cCCeEEEEeCC---CCCh-hhHHHHHHHHHHCC
Confidence 568899999999997 68999998874 5555 35677788898875
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-12 Score=119.91 Aligned_cols=148 Identities=22% Similarity=0.262 Sum_probs=112.4
Q ss_pred ccCCCCCCCCCHHHHHHHHhc---cCCCCC-CC---cCh----HHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH--HH-H
Q 025730 100 IDANENPYGPPPEVREALGQL---KFPYIY-PD---PES----RRLRAALAKDSGLESDHILVGCGADELIDLI--MR-C 165 (249)
Q Consensus 100 L~~~~~~~~~p~~v~~al~~~---~~~~~Y-p~---~g~----~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~--~~-~ 165 (249)
++.|+..+..|+.+.+++.+. ...+.| |. .|. .++++.+++++|++...+..++|+++.+..+ ++ .
T Consensus 73 ~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~ 152 (481)
T PRK04366 73 YPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAY 152 (481)
T ss_pred ecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHH
Confidence 666777788889998888753 122456 22 243 3456666677788755666677777666543 32 3
Q ss_pred hcCCCC----eEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHH
Q 025730 166 VLDPGD----KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWI 241 (249)
Q Consensus 166 ~~~pGd----~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i 241 (249)
+.++|| +|++++|+|+.|...++..|++++.++.+.++.+|+++++++++ .++++|++++|| |||.+-.+.+.+
T Consensus 153 ~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~-~~t~~V~v~~Pn-~tG~~~~dl~eI 230 (481)
T PRK04366 153 HEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVG-EDTAALMLTNPN-TLGLFERNILEI 230 (481)
T ss_pred hhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhcc-cCCeEEEEeCCC-CccccchHHHHH
Confidence 467776 99999999999999999999999999987778999999999997 689999999999 999652355778
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
..+|+++|
T Consensus 231 ~~~a~~~g 238 (481)
T PRK04366 231 AEIVHEAG 238 (481)
T ss_pred HHHHHHcC
Confidence 88888875
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=115.74 Aligned_cols=125 Identities=20% Similarity=0.344 Sum_probs=103.8
Q ss_pred CCCC-CcChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHHHHHHhc-CCCCeEEEcCCCChhHHHHHHHCCCEEE
Q 025730 124 YIYP-DPESRRLRAALAKDS----G--LESDHILVGCGADELIDLIMRCVL-DPGDKIVDCPPTFTMYEFDAAVNGAAVV 195 (249)
Q Consensus 124 ~~Yp-~~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~~~~~~~-~pGd~Vlv~~P~y~~~~~~~~~~G~~v~ 195 (249)
--|. +.|.+-+|+.+|++. | .++++|++|.|++.++..++..++ .+.+.|++|-|.|+.|...+..+|+..+
T Consensus 107 GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~~~~~v 186 (475)
T KOG0258|consen 107 GAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLLGGTQV 186 (475)
T ss_pred cccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHhCCccc
Confidence 4575 468999999999997 3 467899999999999999999875 4679999999999999999988888766
Q ss_pred Eec--CCCCCCCCHHHHHHhhcc----CCceEEEEcCCCCccccCCChHH--HHHHHhhhh
Q 025730 196 KVP--RKSDFSLNVELIADAVER----EKPKCIFLTSPNNPDGRFSWTSS--WIWGISSEH 248 (249)
Q Consensus 196 ~v~--~~~~~~id~e~l~~~i~~----~~~k~i~l~~PnNPTG~~~~~~e--~i~~i~~~~ 248 (249)
.+- ...+|.+|+++|++.+++ -+++++++.||.||||.+++.+. .+-.+|+++
T Consensus 187 ~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~ 247 (475)
T KOG0258|consen 187 PYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEE 247 (475)
T ss_pred ceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHc
Confidence 554 557799999999998754 36789999999999999998873 355566554
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-12 Score=115.84 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=120.4
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHhc-c----CC-CC-CCC---cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQL-K----FP-YI-YPD---PESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~~-~----~~-~~-Yp~---~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
+.+.+.|+.+... +.++.|.+++... . .+ .+ |.. ...++.|+.+|+++|.++++|++|+|+|+++++++
T Consensus 41 ~~~~vyld~~at~-p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl 119 (428)
T KOG1549|consen 41 GTRPVYLDNQATG-PMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVL 119 (428)
T ss_pred CCccEEEecCcCC-CCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHH
Confidence 3456888776543 4678899998762 1 11 22 321 23678999999999999989999999999999999
Q ss_pred HHhc-CCCC----eEEEcCCCChhH---HHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 164 RCVL-DPGD----KIVDCPPTFTMY---EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 164 ~~~~-~pGd----~Vlv~~P~y~~~---~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
+.+. ..+| .|++..-.|... ....+..|.+++++|.++++.+|.+.++++++ ++|++|.|.+.||-+|+++
T Consensus 120 ~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~-~~T~lv~I~~Vnn~~gv~~ 198 (428)
T KOG1549|consen 120 KGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIR-SKTRLVSIMHVNNEIGVLQ 198 (428)
T ss_pred HHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcC-CCceEEEEEecccCccccc
Confidence 9873 3566 899888888743 33445589999999988888899999999999 8999999999999999995
Q ss_pred ChHHHHHHHhhhhC
Q 025730 236 WTSSWIWGISSEHN 249 (249)
Q Consensus 236 ~~~e~i~~i~~~~~ 249 (249)
+.++|..+|+++|
T Consensus 199 -Pv~EI~~icr~~~ 211 (428)
T KOG1549|consen 199 -PVKEIVKICREEG 211 (428)
T ss_pred -cHHHHHHHhCcCC
Confidence 6666677888764
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=113.94 Aligned_cols=170 Identities=17% Similarity=0.198 Sum_probs=122.9
Q ss_pred CCCcHHHHHHHhCCC-CCCeeeccCCC--CCCC---CCHHHHHHHHhc---cCCCCC-CCcChHHHHHHHHHHc-C----
Q 025730 79 PILPFEVLSIQLGRK-PEDIVKIDANE--NPYG---PPPEVREALGQL---KFPYIY-PDPESRRLRAALAKDS-G---- 143 (249)
Q Consensus 79 ~~~~~~~~~~~~g~~-~~~~I~L~~~~--~~~~---~p~~v~~al~~~---~~~~~Y-p~~g~~~lr~~la~~~-~---- 143 (249)
+..++-.+...+... .++.|+|++|. +..+ .-+.|.+|-+.+ .....| |-.|.+++++.+++.+ |
T Consensus 9 p~DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~llFG~d~~ 88 (396)
T COG1448 9 PADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLLFGADSP 88 (396)
T ss_pred CCCchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHhcCCCcH
Confidence 445566666666543 35679999983 2222 234555555442 234677 8889999999999985 5
Q ss_pred -CCCCCE--EEeCCHHHHHHHHHHHh--cCCCCeEEEcCCCChhHHHHHHHCCCEEEEec--CCCCCCCCHHHHHHhhcc
Q 025730 144 -LESDHI--LVGCGADELIDLIMRCV--LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVER 216 (249)
Q Consensus 144 -~~~~~I--~vt~Ga~~~l~~~~~~~--~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~--~~~~~~id~e~l~~~i~~ 216 (249)
+..+.| +-|.|+|.+|.+....+ ..|..+|++++|+|+.+..+++..|.++..+| ..++..+|++.+.+.+++
T Consensus 89 ~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~ 168 (396)
T COG1448 89 ALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKT 168 (396)
T ss_pred HHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHh
Confidence 334443 46899999999998765 45667899999999999999999999999999 234566999999999876
Q ss_pred CCceEEEEcC--CCCccccCCChHHH--HHHHhhhh
Q 025730 217 EKPKCIFLTS--PNNPDGRFSWTSSW--IWGISSEH 248 (249)
Q Consensus 217 ~~~k~i~l~~--PnNPTG~~~~~~e~--i~~i~~~~ 248 (249)
-..+-|+|-| .|||||..++.++| +..+.+++
T Consensus 169 a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r 204 (396)
T COG1448 169 APEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKER 204 (396)
T ss_pred CCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 4444444444 39999999999988 44455443
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=119.21 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=97.6
Q ss_pred CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHH----HHHCCCEEEEecCCC
Q 025730 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD----AAVNGAAVVKVPRKS 201 (249)
Q Consensus 126 Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~----~~~~G~~v~~v~~~~ 201 (249)
+..+...+|++.+|+++|.. ..+++++++++|.+++.+++++||+|+++...|...... +...|++++.++.+
T Consensus 61 ~~~p~~~~le~~lA~l~g~~--~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~- 137 (433)
T PRK08134 61 ISNPTVAVLEERVAALEGGV--GAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG- 137 (433)
T ss_pred CcChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-
Confidence 34456789999999999954 478899999999999999999999999999999744333 34489999999863
Q ss_pred CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 202 ~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++++++++ +++|+|++.+|+||+|.+ .+.+.+.++|+++|
T Consensus 138 ----d~~~l~~~i~-~~TklV~~e~~~np~g~v-~Di~~I~~la~~~g 179 (433)
T PRK08134 138 ----DIDGWRAAIR-PNTRLLFGETLGNPGLEV-LDIPTVAAIAHEAG 179 (433)
T ss_pred ----CHHHHHHhcC-CCCeEEEEECCCcccCcc-cCHHHHHHHHHHcC
Confidence 7999999998 789999999999999999 57788888999875
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=113.91 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=100.0
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC-CCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFS 204 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~ 204 (249)
..+...++++.+++++|. +++++++|+++++..++.++ +++||+|+++.++|..+...+...|++++.++.+. ++.
T Consensus 16 ~~~~~~~~~~~la~~~~~--~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 93 (352)
T cd00616 16 LGPKVREFEKAFAEYLGV--KYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDPDTYN 93 (352)
T ss_pred CCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 445688999999999994 56888889999999999988 68999999999999988888888999999999765 788
Q ss_pred CCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 205 LNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 205 id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|+++++++++ .++++|+++| ++|.. .+.+.+..+|+++|
T Consensus 94 ~d~~~l~~~i~-~~~~~v~~~~---~~G~~-~~~~~i~~l~~~~~ 133 (352)
T cd00616 94 IDPELIEAAIT-PRTKAIIPVH---LYGNP-ADMDAIMAIAKRHG 133 (352)
T ss_pred cCHHHHHHhcC-cCCeEEEEEC---CCCCc-CCHHHHHHHHHHcC
Confidence 99999999997 6899999764 68988 45677778898875
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=118.56 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=96.6
Q ss_pred CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecCCC
Q 025730 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPRKS 201 (249)
Q Consensus 126 Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~~~ 201 (249)
++++...+|++.++++.|.+ ..+++++++.++.+++.+++++||+|+++.++|.. +...+...|++++.++..
T Consensus 60 ~~~p~~~~le~~lA~l~g~~--~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~- 136 (427)
T PRK05994 60 ITNPTNAVLEERVAALEGGT--AALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD- 136 (427)
T ss_pred CCCccHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC-
Confidence 34556788999999999854 47788888999999999999999999999999974 334466789999998752
Q ss_pred CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 202 ~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++++++++ +++|+|++++|+||||.++ +.+.+..+|+++|
T Consensus 137 ----d~~~l~~ai~-~~tklV~vesp~NptG~v~-dl~~I~~la~~~g 178 (427)
T PRK05994 137 ----DPASFERAIT-PRTKAIFIESIANPGGTVT-DIAAIAEVAHRAG 178 (427)
T ss_pred ----CHHHHHHhcC-cCCeEEEEECCCCCCCeec-CHHHHHHHHHHcC
Confidence 7899999997 6899999999999999996 5667778898875
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=119.25 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=93.7
Q ss_pred CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh-HHHHHHH---CCCEEEEecCC
Q 025730 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM-YEFDAAV---NGAAVVKVPRK 200 (249)
Q Consensus 125 ~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~-~~~~~~~---~G~~v~~v~~~ 200 (249)
+++++...+|++.||++.|. +..++++++++++.+++.+++++||+|+++.+.|.. +...... .|+++..++.
T Consensus 54 r~~~pt~~~Le~~lA~l~g~--~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~- 130 (425)
T PRK06084 54 RIMNPTNDVLEQRVAALEGG--VGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH- 130 (425)
T ss_pred CCCCchHHHHHHHHHHHhCC--CceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC-
Confidence 44667788999999999984 456677888899999999999999999999999983 4333322 5677766653
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++++|++++|+||||.++ +.+.+.++|+++|
T Consensus 131 ----~d~e~le~ai~-~~tklV~lesp~NPtG~v~-dl~~I~~la~~~~ 173 (425)
T PRK06084 131 ----DDIAALEALID-ERTKAVFCESIGNPAGNII-DIQALADAAHRHG 173 (425)
T ss_pred ----CCHHHHHHHhc-cCCcEEEEeCCCCCCCeec-CHHHHHHHHHHcC
Confidence 38999999998 6899999999999999996 4677778898875
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-12 Score=116.92 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=92.1
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhH----HHHHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY----EFDAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~----~~~~~~~G~~v~~v~~ 199 (249)
.+|+++....|+++++++.|.+ ..+++++| +.++.+++ .+++|||+|++++|.|... ...+...|+++..++.
T Consensus 45 ~r~~~p~~~~Le~~la~l~g~~-~al~~~SG-~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 45 SRSGNPTRFALEELIADLEGGV-KGFAFASG-LAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred cCCCChhHHHHHHHHHHHhCCC-CEEEECCH-HHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 4566677889999999999853 34555555 56888766 4789999999999999633 3445568999888864
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++++|++++|+||||.+. +.+.+..+|+++|
T Consensus 122 -----~d~e~l~~ai~-~~t~lV~lesP~Nptg~~~-di~~I~~la~~~g 164 (380)
T PRK06176 122 -----SDLSQIKKAIK-PNTKALYLETPSNPLLKIT-DLAQCASVAKDHG 164 (380)
T ss_pred -----CCHHHHHHhcC-cCceEEEEECCCCCCceec-CHHHHHHHHHHcC
Confidence 37999999997 6899999999999999995 5667788898875
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=115.44 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=97.7
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH----HHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF----DAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~----~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+++++|. +..++++++++++..++.+++++||+|+++.+.|..... .+...|+++..++.
T Consensus 35 ~r~~~p~~~~le~~la~l~g~--~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 112 (369)
T cd00614 35 SRIGNPTVDALEKKLAALEGG--EAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDP 112 (369)
T ss_pred ECCCChhHHHHHHHHHHHHCC--CCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCC
Confidence 345667789999999999984 467777888999999999999999999999999975433 34568999998875
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ |+++++++++ .++++|++.+|+||+|.+. +.+.+.++|+++|
T Consensus 113 ~-----d~~~l~~~i~-~~~~~v~~e~~~np~g~~~-dl~~i~~la~~~g 155 (369)
T cd00614 113 D-----DPEALEAAIK-PETKLVYVESPTNPTLKVV-DIEAIAELAHEHG 155 (369)
T ss_pred C-----CHHHHHHhcC-CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcC
Confidence 3 5899999997 5899999999999999995 5677788898875
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-12 Score=113.48 Aligned_cols=150 Identities=20% Similarity=0.228 Sum_probs=118.9
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-ccCC-------CCCCC---cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LKFP-------YIYPD---PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~~~-------~~Yp~---~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
+|.|+.+... ++.+++++++.. +... +.|.. .-.++.|+.+|+.+|+++++|++|+|+||+.++++..
T Consensus 2 miYlD~~ATT-p~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g 80 (386)
T COG1104 2 MIYLDNAATT-PVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKG 80 (386)
T ss_pred cccccccccC-CCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHh
Confidence 3566665543 345788888765 2211 22221 1246789999999999999999999999999999987
Q ss_pred h--cC----CCCeEEEcCCCChhHHHHHHH---CCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 166 V--LD----PGDKIVDCPPTFTMYEFDAAV---NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 166 ~--~~----pGd~Vlv~~P~y~~~~~~~~~---~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
. .. .|.+|+++.-.|......++. .|.+|.++|.+.++.+|+++|+++++ ++|.+|.|.+.||-||++ .
T Consensus 81 ~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~-~~T~LVSim~aNnE~G~I-Q 158 (386)
T COG1104 81 AALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR-PDTILVSIMHANNETGTI-Q 158 (386)
T ss_pred hHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC-CCceEEEEEecccCeeec-c
Confidence 3 22 478999999999866665555 49999999999999999999999999 789999999999999999 6
Q ss_pred hHHHHHHHhhhhC
Q 025730 237 TSSWIWGISSEHN 249 (249)
Q Consensus 237 ~~e~i~~i~~~~~ 249 (249)
+.+.+..+|++++
T Consensus 159 pI~ei~~i~k~~~ 171 (386)
T COG1104 159 PIAEIGEICKERG 171 (386)
T ss_pred cHHHHHHHHHHcC
Confidence 8888899999875
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=118.91 Aligned_cols=151 Identities=19% Similarity=0.135 Sum_probs=108.6
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CC-----CCCCCc--ChHH----HHHHHHHHcCCCCCCEEEeCCHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LK--FP-----YIYPDP--ESRR----LRAALAKDSGLESDHILVGCGADEL 158 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~-----~~Yp~~--g~~~----lr~~la~~~~~~~~~I~vt~Ga~~~ 158 (249)
..++.|+|..++++ +++.+++++.. +. +. .+|... .... .++.+++++|.+..+|++++| +++
T Consensus 23 ~~~~~~~l~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sg-t~a 99 (416)
T PRK00011 23 RQEEHIELIASENF--VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSG-SQA 99 (416)
T ss_pred HHhcCeeeecccCc--CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCCc-hHH
Confidence 34567999999998 57889988865 21 11 112111 1222 344788999988777777666 678
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHH-----HHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccc
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEF-----DAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~-----~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG 232 (249)
+..++.++++|||+|+++.|+|..+.. .....|++++.++.+ +++.+|++++++++++.++++|++++++|+
T Consensus 100 l~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~~-- 177 (416)
T PRK00011 100 NAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYS-- 177 (416)
T ss_pred HHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCcCC--
Confidence 999999999999999999999975421 122356788888865 458899999999997457999999876654
Q ss_pred cCCChHHHHHHHhhhhC
Q 025730 233 RFSWTSSWIWGISSEHN 249 (249)
Q Consensus 233 ~~~~~~e~i~~i~~~~~ 249 (249)
.. .+.+.+.++|+++|
T Consensus 178 ~~-~~~~~I~~la~~~~ 193 (416)
T PRK00011 178 RP-IDFKRFREIADEVG 193 (416)
T ss_pred Cc-cCHHHHHHHHHHcC
Confidence 44 35677888898875
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=112.40 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=109.4
Q ss_pred CCCCeeeccCCC-CCCCCCHHHHHHHHh-cc-CC---CCCC-CcChHHHHHHHH----HHcCCCCCCEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANE-NPYGPPPEVREALGQ-LK-FP---YIYP-DPESRRLRAALA----KDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~-~~~~~p~~v~~al~~-~~-~~---~~Yp-~~g~~~lr~~la----~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
.+.++|+|+.++ ..+++++.+.+++.+ +. .. ..|. ..|..+++++++ ++++. +++|++++|+ +++..
T Consensus 31 ~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~-~~~i~~~sG~-~a~~~ 108 (385)
T TIGR01825 31 NGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT-EAALVFQSGF-NTNQG 108 (385)
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC-CcEEEECcHH-HHHHH
Confidence 356789999886 567788888887765 32 21 2342 235445555554 44564 4568888885 56667
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc---CCceEEEEcCCCCccccCCChH
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
++..++++||.|++..|+|..+...+...|.+++.++ .+|++++++.+++ .++++|++++++||||.+. +.
T Consensus 109 a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~-~~ 182 (385)
T TIGR01825 109 VLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVA-PL 182 (385)
T ss_pred HHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCcc-CH
Confidence 8888899999999999999988877788888887764 4788888887753 3688888888999999985 45
Q ss_pred HHHHHHhhhhC
Q 025730 239 SWIWGISSEHN 249 (249)
Q Consensus 239 e~i~~i~~~~~ 249 (249)
+.+.++|++||
T Consensus 183 ~~i~~l~~~~~ 193 (385)
T TIGR01825 183 PEIVELAERYG 193 (385)
T ss_pred HHHHHHHHHhC
Confidence 66888898875
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=113.76 Aligned_cols=124 Identities=15% Similarity=0.250 Sum_probs=104.3
Q ss_pred CCC-CCcChHHHHHHHHHHcC-------CCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEE
Q 025730 124 YIY-PDPESRRLRAALAKDSG-------LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVV 195 (249)
Q Consensus 124 ~~Y-p~~g~~~lr~~la~~~~-------~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~ 195 (249)
.+| +..|.++|...+.++.+ ...-+|++|+|.+.+++.+++.+++.||.|++..++|+.-....+..|++++
T Consensus 94 lQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~i 173 (472)
T KOG0634|consen 94 LQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKII 173 (472)
T ss_pred hccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCceEE
Confidence 578 56789999999999765 1223799999999999999999999999999999999988888888999999
Q ss_pred EecCCCCCCCCHHHHHHhhccC--------CceEEEEcCC--CCccccCCChH--HHHHHHhhhhC
Q 025730 196 KVPRKSDFSLNVELIADAVERE--------KPKCIFLTSP--NNPDGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 196 ~v~~~~~~~id~e~l~~~i~~~--------~~k~i~l~~P--nNPTG~~~~~~--e~i~~i~~~~~ 249 (249)
.|+++ ..++++|.|++.+++. +++++| |-| +||||..++.+ +.+-.||++||
T Consensus 174 pv~md-~~Gi~pE~l~~il~~w~~~~~k~~~p~vlY-TIPTgqNPTG~tls~errk~iy~LArKyD 237 (472)
T KOG0634|consen 174 PVKMD-QDGIDPESLEEILSNWKPGSYKKPKPHVLY-TIPTGQNPTGNTLSLERRKKIYQLARKYD 237 (472)
T ss_pred ecccc-CCCCCHHHHHHHHhcCCcccccCCCCeEEE-eCcCCCCCCCCccCHHHHHHHHHHHHHcC
Confidence 99984 4589999999998653 245555 545 79999999998 44788999986
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=115.27 Aligned_cols=148 Identities=19% Similarity=0.184 Sum_probs=107.5
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-cc--CC------CCC-CCcChHHHHH----HHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LK--FP------YIY-PDPESRRLRA----ALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~--~~------~~Y-p~~g~~~lr~----~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
..+.|..+++.. ++.+++++.. +. +. ..| +..+..++++ .+++++|.+..+|++++ +++++..
T Consensus 20 ~~~~~~~~~~~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~s-gt~a~~~ 96 (402)
T cd00378 20 ETLELIASENFT--SPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHS-GSQANLA 96 (402)
T ss_pred hCeeeeccCCcC--CHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCC-cHHHHHH
Confidence 357887777775 6789999875 21 11 123 2233445555 46678898766666665 5789999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHH-----HHHCCCEEEEecCCC---CCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFD-----AAVNGAAVVKVPRKS---DFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~-----~~~~G~~v~~v~~~~---~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
++.++++|||+|++++|+|..+... ++..|.++..++.+. ++.+|++++++++.+.++++|++++|+||+
T Consensus 97 ~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~~-- 174 (402)
T cd00378 97 VYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPR-- 174 (402)
T ss_pred HHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccCC--
Confidence 9999999999999999999755332 556788777776432 689999999999965689999999998874
Q ss_pred CCChHHHHHHHhhhhC
Q 025730 234 FSWTSSWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~i~~i~~~~~ 249 (249)
. .+.+.+.++|+++|
T Consensus 175 ~-~~~~~I~~l~~~~~ 189 (402)
T cd00378 175 P-IDFKRFREIADEVG 189 (402)
T ss_pred C-cCHHHHHHHHHhcC
Confidence 3 34566788898875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-12 Score=116.97 Aligned_cols=116 Identities=21% Similarity=0.298 Sum_probs=93.1
Q ss_pred CCCC---CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHH----HHHCCCEEEE
Q 025730 124 YIYP---DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD----AAVNGAAVVK 196 (249)
Q Consensus 124 ~~Yp---~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~----~~~~G~~v~~ 196 (249)
+.|. ++....|.+.++++.+ .++.++++|++.++.+++ .++++||+|+++.|.|..+... ....|++++.
T Consensus 125 ~~Y~r~gnpt~~aLE~~lA~leg--~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~ 201 (464)
T PLN02509 125 YDYTRSGNPTRDALESLLAKLDK--ADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKR 201 (464)
T ss_pred CccCCCCCHHHHHHHHHHHHHhC--CCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEE
Confidence 4564 2346678888888877 556777788899987666 5789999999999999877533 4468999998
Q ss_pred ecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 197 VPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 197 v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++. .|+++++++++ +++|+|++++|+||||.+ .+.+.+.++|++||
T Consensus 202 vd~-----~d~e~l~~ai~-~~TklV~lesPsNPtG~i-~Dl~~I~~lAk~~g 247 (464)
T PLN02509 202 VNT-----TNLDEVAAAIG-PQTKLVWLESPTNPRQQI-SDIRKIAEMAHAQG 247 (464)
T ss_pred eCC-----CCHHHHHHhCC-cCCeEEEEECCCCCCCCH-HHHHHHHHHHHHcC
Confidence 864 36899999997 789999999999999998 67788888899875
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=113.32 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=90.8
Q ss_pred cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH----HHHHCCCEEEEecCCCCCC
Q 025730 129 PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF----DAAVNGAAVVKVPRKSDFS 204 (249)
Q Consensus 129 ~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~----~~~~~G~~v~~v~~~~~~~ 204 (249)
+....|++.++...+- .+. ++++++++++..++.+++++||+|++++|.|..+.. .++..|+++..++.+
T Consensus 64 Pt~~~Le~~la~le~~-~~~-v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~---- 137 (395)
T PRK05967 64 PTTDALCKAIDALEGS-AGT-ILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE---- 137 (395)
T ss_pred hHHHHHHHHHHHHhCC-CCE-EEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC----
Confidence 4455788888877652 334 455557899999999999999999999999987664 446689999998642
Q ss_pred CCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 205 LNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 205 id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.+.++++++ +++|+|++++|+||+|.+ .+.+.+.++|+++|
T Consensus 138 -~~e~l~~al~-~~TklV~lesPsNP~l~v-~dl~~I~~la~~~g 179 (395)
T PRK05967 138 -IGAGIAKLMR-PNTKVVHTEAPGSNTFEM-QDIPAIAEAAHRHG 179 (395)
T ss_pred -CHHHHHHhcC-cCceEEEEECCCCCCCcH-HHHHHHHHHHHHhC
Confidence 3578999997 689999999999999988 57788889999875
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=111.12 Aligned_cols=114 Identities=22% Similarity=0.318 Sum_probs=100.8
Q ss_pred cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCC
Q 025730 129 PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLN 206 (249)
Q Consensus 129 ~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id 206 (249)
+...+|.+++++|+| ..+.+.++++|.+|.++++++ ++|||+|+++.-+|......+...|+++++|+.+ +.+.+|
T Consensus 34 ~~v~~FE~~~ae~~G--~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid 111 (374)
T COG0399 34 PFVRRFEQAFAEYLG--VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNID 111 (374)
T ss_pred hHHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCC
Confidence 347899999999999 557888899999999999955 6999999999999999999999999999999976 559999
Q ss_pred HHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 207 VELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 207 ~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++.++++|+ +++|+|+ |-+--|.. .+.+.+..||++||
T Consensus 112 ~~~ie~aIt-~~tKAIi---pVhl~G~~-~dm~~i~~la~~~~ 149 (374)
T COG0399 112 PDLIEAAIT-PRTKAII---PVHLAGQP-CDMDAIMALAKRHG 149 (374)
T ss_pred HHHHHHHcc-cCCeEEE---EehhccCC-CCHHHHHHHHHHcC
Confidence 999999999 6799999 55566777 68889999999986
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-11 Score=109.46 Aligned_cols=149 Identities=16% Similarity=0.150 Sum_probs=113.9
Q ss_pred CCCCeeeccCCC-CCCCCCHHHHHHHHh-cc-C------CCCCC--CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANE-NPYGPPPEVREALGQ-LK-F------PYIYP--DPESRRLRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~-~~~~~p~~v~~al~~-~~-~------~~~Yp--~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
++..+++++.++ -.+...|.+++++.+ +. . ...|. .....+|++.+++++|. +.+++++|+++++..
T Consensus 52 ~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--~~~~~~~sG~~An~~ 129 (407)
T PRK07179 52 PGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGF--ESCLLCQSGWAANVG 129 (407)
T ss_pred CCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCC--CcEEEECCHHHHHHH
Confidence 345678887764 344556778877754 31 1 12232 12367899999999996 457889999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHH
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWI 241 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i 241 (249)
++++++.+||.|++..+.|......+...|++++.++. .|++++++++++.++++|++++|+||||.+.+ .+.+
T Consensus 130 ~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~p-l~~I 203 (407)
T PRK07179 130 LLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-----NDVDHLRRQIERHGPGIIVVDSVYSTTGTIAP-LADI 203 (407)
T ss_pred HHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCcccc-HHHH
Confidence 99999999999999999998777777778888776643 48999999997445789999999999999965 5677
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|+++|
T Consensus 204 ~~l~~~~~ 211 (407)
T PRK07179 204 VDIAEEFG 211 (407)
T ss_pred HHHHHHcC
Confidence 88898875
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=111.50 Aligned_cols=146 Identities=18% Similarity=0.155 Sum_probs=103.3
Q ss_pred CeeeccCC-CCCCCCCHHHHHHHHh-cc-CC-------CCCCCc-ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 96 DIVKIDAN-ENPYGPPPEVREALGQ-LK-FP-------YIYPDP-ESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 96 ~~I~L~~~-~~~~~~p~~v~~al~~-~~-~~-------~~Yp~~-g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
+.+.++.| .+++++++.+++++.+ +. .+ ..|+.. ...+|++.+++++|. ++.|++++|+ ++...++.
T Consensus 47 ~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~-~~~i~~~sG~-~a~~~~i~ 124 (410)
T PRK13392 47 RVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK-ESALLFTSGY-VSNDAALS 124 (410)
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC-CCEEEECcHH-HHHHHHHH
Confidence 34555554 6788889999988865 32 11 123332 467899999999995 5678888875 56666666
Q ss_pred Hhc--CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhc---cCCceEEEEcCCCCccccCCChHH
Q 025730 165 CVL--DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVE---REKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 165 ~~~--~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~---~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
.+. .+||.|++....|..+...+...|+++..++.+ |.+.+++.++ ..++++|++++|+||||.+++ .+
T Consensus 125 ~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~-l~ 198 (410)
T PRK13392 125 TLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAP-IE 198 (410)
T ss_pred HHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCccccc-HH
Confidence 554 489988887777877666777889988777532 3444444442 257899999999999999964 66
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+..+|++||
T Consensus 199 ~i~~l~~~~~ 208 (410)
T PRK13392 199 AICDLADRYN 208 (410)
T ss_pred HHHHHHHHcC
Confidence 6777888875
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.5e-12 Score=112.80 Aligned_cols=148 Identities=21% Similarity=0.272 Sum_probs=116.4
Q ss_pred eccCCCCCCCCCHHHHHHHHhc-c----CC--CCCC-C----cChHHHHHHHHHHcCCCC-CCEEEeCCHHHHHHHHHHH
Q 025730 99 KIDANENPYGPPPEVREALGQL-K----FP--YIYP-D----PESRRLRAALAKDSGLES-DHILVGCGADELIDLIMRC 165 (249)
Q Consensus 99 ~L~~~~~~~~~p~~v~~al~~~-~----~~--~~Yp-~----~g~~~lr~~la~~~~~~~-~~I~vt~Ga~~~l~~~~~~ 165 (249)
.|+.+... +.|+.+++++.+. . .+ ..+. . .-..++|+.+++++|.++ ++|+++.|++++++.++.+
T Consensus 2 Yld~~~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~ 80 (371)
T PF00266_consen 2 YLDNAGTG-PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASS 80 (371)
T ss_dssp EEBTSSS--B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHH
T ss_pred EeeCCCcc-CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhc
Confidence 45544443 4678888888752 1 11 0111 1 124689999999999988 8999999999999999999
Q ss_pred h---cCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 166 V---LDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 166 ~---~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
+ +++||+|++.+-.|.. +....+..|+++..++.+.+..+|+++++++++ +++++|++++.+|-||..+ +.
T Consensus 81 l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~-~~~~lv~~~~~~~~tG~~~-pi 158 (371)
T PF00266_consen 81 LLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN-PDTRLVSISHVENSTGVRN-PI 158 (371)
T ss_dssp HHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH-TTESEEEEESBETTTTBBS-SH
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc-cccceEEeecccccccEEe-ee
Confidence 9 7999999999999863 445556789999999977778899999999998 8999999999999999984 67
Q ss_pred HHHHHHhhhhC
Q 025730 239 SWIWGISSEHN 249 (249)
Q Consensus 239 e~i~~i~~~~~ 249 (249)
+.+..+|+++|
T Consensus 159 ~~I~~~~~~~~ 169 (371)
T PF00266_consen 159 EEIAKLAHEYG 169 (371)
T ss_dssp HHHHHHHHHTT
T ss_pred ceehhhhhccC
Confidence 77788888875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=110.38 Aligned_cols=116 Identities=22% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+++++|.+ ..+++++++.++.+++.+++++||+|+++.+.|.. +...+...|++++.++.
T Consensus 58 ~r~~~p~~~~le~~lA~l~g~~--~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 58 SRGDNPTVRAFEEMLAKLEGAE--DARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred cCCCChhHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 3455666889999999999964 33445566789999998899999999999999974 34456668999999874
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
. |++++++++ .++|+|+++||+||++.+ .+.+.+.++|++||
T Consensus 136 ~-----d~~~l~~~i--~~tklV~ie~pt~~~~~~-~dl~~i~~la~~~g 177 (389)
T PRK05968 136 R-----DEEAVAKAL--PGAKLLYLESPTSWVFEL-QDVAALAALAKRHG 177 (389)
T ss_pred C-----CHHHHHHhc--ccCCEEEEECCCCCCCcH-HHHHHHHHHHHHcC
Confidence 2 789999988 368999999999999988 67788888999875
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=109.79 Aligned_cols=153 Identities=17% Similarity=0.256 Sum_probs=109.3
Q ss_pred CCCeeeccCC--CCCCCCC-HHHHHHHHh-ccC----CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 94 PEDIVKIDAN--ENPYGPP-PEVREALGQ-LKF----PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 94 ~~~~I~L~~~--~~~~~~p-~~v~~al~~-~~~----~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
+...|||..+ .++++.. +.+.+++.+ +.. ...|+.+...+|.+.++++++. +++++++|+++++.++++.
T Consensus 26 g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~~~~~~sg~~a~~~a~~~ 103 (379)
T TIGR00707 26 GKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSGA--DRVFFCNSGAEANEAALKL 103 (379)
T ss_pred CCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHHH
Confidence 4567899886 4566655 788877765 322 2456666678899999999986 4999999999999999885
Q ss_pred h---cC----CCCeEEEcCCCChhHHHHHHHCCCEEEE----ecCCCCCCC----CHHHHHHhhccCCceEEEEcCCCCc
Q 025730 166 V---LD----PGDKIVDCPPTFTMYEFDAAVNGAAVVK----VPRKSDFSL----NVELIADAVEREKPKCIFLTSPNNP 230 (249)
Q Consensus 166 ~---~~----pGd~Vlv~~P~y~~~~~~~~~~G~~v~~----v~~~~~~~i----d~e~l~~~i~~~~~k~i~l~~PnNP 230 (249)
+ .. +||+|++++|+|..|...+...+..... .+...++.. |++.+++.++ .++++|+++.++||
T Consensus 104 ~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~~~p~~~~ 182 (379)
T TIGR00707 104 ARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAID-DETAAVIVEPIQGE 182 (379)
T ss_pred HHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhh-hCeeEEEEEccccC
Confidence 4 22 3799999999998877776665554322 222222222 8999999997 57899999666677
Q ss_pred cccC-CChH--HHHHHHhhhhC
Q 025730 231 DGRF-SWTS--SWIWGISSEHN 249 (249)
Q Consensus 231 TG~~-~~~~--e~i~~i~~~~~ 249 (249)
+|.. ++.+ +.+..+|+++|
T Consensus 183 ~g~~~~~~~~l~~i~~l~~~~~ 204 (379)
T TIGR00707 183 GGVNPASAEFLKALREICKDKD 204 (379)
T ss_pred CCCccCCHHHHHHHHHHHHHcC
Confidence 7764 3333 44677888875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.3e-11 Score=109.97 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=93.7
Q ss_pred CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH----HHHHCCCEEEEecCCCCC
Q 025730 128 DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF----DAAVNGAAVVKVPRKSDF 203 (249)
Q Consensus 128 ~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~----~~~~~G~~v~~v~~~~~~ 203 (249)
++....|++.+++++|.+ ..+++++++.++..++.+++++||+|++....|..... .+...|++++.++ +.
T Consensus 68 ~p~~~~Le~~lA~l~g~~--~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~-- 142 (436)
T PRK07812 68 NPTQDVVEQRIAALEGGV--AALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP-- 142 (436)
T ss_pred CchHHHHHHHHHHHhCCC--eEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC--
Confidence 456789999999999953 46777788889999999999999999999988875332 2344788888885 11
Q ss_pred CCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 204 SLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 204 ~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|++.++++++ +++++|++.+|+||+|.+ .+.+.+.++|+++|
T Consensus 143 -~d~e~l~~ai~-~~tklV~ie~~sNp~G~v-~Dl~~I~~la~~~g 185 (436)
T PRK07812 143 -DDLDAWRAAVR-PNTKAFFAETISNPQIDV-LDIPGVAEVAHEAG 185 (436)
T ss_pred -CCHHHHHHhCC-CCCeEEEEECCCCCCCee-cCHHHHHHHHHHcC
Confidence 38999999998 789999999999999999 57778888999875
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=109.37 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=94.6
Q ss_pred cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCC
Q 025730 129 PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLN 206 (249)
Q Consensus 129 ~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id 206 (249)
+...+|++++++++| ..+++.+++++.+|.+++.++ +++||+|+++..+|......+...|++++.++.+ +++.+|
T Consensus 25 ~~~~~fE~~~a~~~g--~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id 102 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFG--VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNID 102 (363)
T ss_dssp HHHHHHHHHHHHHHT--SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-
T ss_pred HHHHHHHHHHHHHhC--CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcC
Confidence 347899999999999 568999999999999999987 5799999999999999999999999999999976 789999
Q ss_pred HHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 207 VELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 207 ~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++.++++++ +++|+|+++| .-|.. .+.+.+..+|++||
T Consensus 103 ~~~~~~~i~-~~t~ai~~~h---~~G~~-~d~~~i~~~~~~~~ 140 (363)
T PF01041_consen 103 PEALEKAIT-PKTKAILVVH---LFGNP-ADMDAIRAIARKHG 140 (363)
T ss_dssp HHHHHHHHH-TTEEEEEEE----GGGB----HHHHHHHHHHTT
T ss_pred HHHHHHHhc-cCccEEEEec---CCCCc-ccHHHHHHHHHHcC
Confidence 999999998 7899999554 55666 47788899999876
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-10 Score=103.27 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=118.7
Q ss_pred CCCCCHHHHHHHHhccCCCCCCCc--ChHHHHHHHHHHcCCCC-CCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh-
Q 025730 106 PYGPPPEVREALGQLKFPYIYPDP--ESRRLRAALAKDSGLES-DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT- 181 (249)
Q Consensus 106 ~~~~p~~v~~al~~~~~~~~Yp~~--g~~~lr~~la~~~~~~~-~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~- 181 (249)
|...++.|++++..-..+++-|+. -..++.+.+...++.+. +-++++.+++.+++..+..++.|||+|++...+..
T Consensus 13 P~~v~~~V~~am~~~~~~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG 92 (383)
T COG0075 13 PVPVPPRVLLAMARPMVGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFG 92 (383)
T ss_pred CCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHH
Confidence 556788999999873333444542 25678888888888764 45667788899999999999999999999888764
Q ss_pred -hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhc-cCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 182 -MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVE-REKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 182 -~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~-~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+..+++.+|+++..+..+++-.+|+++++++++ +++.++|.++|.-.+||+. ++.+.+..++++||
T Consensus 93 ~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvl-npl~~I~~~~k~~g 161 (383)
T COG0075 93 ERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVL-NPLKEIAKAAKEHG 161 (383)
T ss_pred HHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCccccc-CcHHHHHHHHHHcC
Confidence 6888999999999999988888899999999998 3568899999999999999 68899999999885
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=106.97 Aligned_cols=152 Identities=20% Similarity=0.220 Sum_probs=108.8
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-cc---CC---CCCC--C--cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LK---FP---YIYP--D--PESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~---~~---~~Yp--~--~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
++.+.|+.+... +.|+.+.+++.. +. .. ..|. . ....+.++.+ +++|.++++|++|+|+++++++++
T Consensus 26 ~~~iyld~~a~g-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~~~~~v~~~~~~t~~l~~~~ 103 (406)
T TIGR01814 26 NAVIYLDGNSLG-LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RLVGAKEDEVVVMNTLTINLHLLL 103 (406)
T ss_pred CCcEEecCCCcC-cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-cccCCCCCcEEEeCCchHHHHHHH
Confidence 456899966644 347777777753 11 10 1111 1 1122333445 788999999999999999999999
Q ss_pred HHhcCCCC---eEEEcCCCChh--H--HHHHHHCCCEE----EEecCCCCCCCCHHHHHHhhc--cCCceEEEEcCCCCc
Q 025730 164 RCVLDPGD---KIVDCPPTFTM--Y--EFDAAVNGAAV----VKVPRKSDFSLNVELIADAVE--REKPKCIFLTSPNNP 230 (249)
Q Consensus 164 ~~~~~pGd---~Vlv~~P~y~~--~--~~~~~~~G~~v----~~v~~~~~~~id~e~l~~~i~--~~~~k~i~l~~PnNP 230 (249)
.+++++|+ .|++....|+. + ...++..|+++ +.++.+.++.+|++++++.++ .+++++|++++++|.
T Consensus 104 ~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~ 183 (406)
T TIGR01814 104 ASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYY 183 (406)
T ss_pred HHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccc
Confidence 98877653 68888889974 3 23455678887 566665667789999988874 267999999999999
Q ss_pred cccCCChHHHHHHHhhhhC
Q 025730 231 DGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~~e~i~~i~~~~~ 249 (249)
||.++ +.+.+..+|+++|
T Consensus 184 tG~~~-~~~~i~~~~~~~g 201 (406)
T TIGR01814 184 TGQLF-DMAAITRAAHAKG 201 (406)
T ss_pred cceec-CHHHHHHHHHHcC
Confidence 99995 6777778898875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-10 Score=105.17 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=95.9
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH----HHCCCEEEEecCCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPRKSD 202 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~~~~ 202 (249)
.++....|.+.||++.| .+..+++++++.++..++.+++++||+|++....|......+ +..|+++..++.
T Consensus 60 ~nPt~~~le~~la~LEg--~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~--- 134 (395)
T PRK08114 60 GTLTHFSLQEAMCELEG--GAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP--- 134 (395)
T ss_pred CChhHHHHHHHHHHHhC--CCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC---
Confidence 45667889999999887 457888888999999999999999999999999997555443 558999999874
Q ss_pred CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 203 ~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
.|.+.++++++ +++|+|++.+|.||+|.+ .+.+.+.++|+++
T Consensus 135 --~d~~~l~~~l~-~~TrlV~~EtpsNp~~~v-~DI~~Ia~ia~~~ 176 (395)
T PRK08114 135 --LIGADIAKLIQ-PNTKVVFLESPGSITMEV-HDVPAIVAAVRSV 176 (395)
T ss_pred --CCHHHHHHhcC-CCceEEEEECCCCCCCEe-ecHHHHHHHHHHh
Confidence 36799999998 689999999999999999 5778888888886
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=105.75 Aligned_cols=157 Identities=16% Similarity=0.190 Sum_probs=110.7
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCCCCCCCc-----ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFPYIYPDP-----ESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~~~Yp~~-----g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..| ...++ .++.+.+++.+ +.....|+.. ...+|.+.++++++.+.+++++++|+++++..++
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al 113 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAAL 113 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHH
Confidence 34678999876 55666 77888888875 4444455432 3567899999999877889999999999999999
Q ss_pred HHhc--CCCCeEEEcCCCChhHHHHHHH-CC------------CEEEEecCCC------CCCCCHHHHHHhhcc--CCce
Q 025730 164 RCVL--DPGDKIVDCPPTFTMYEFDAAV-NG------------AAVVKVPRKS------DFSLNVELIADAVER--EKPK 220 (249)
Q Consensus 164 ~~~~--~pGd~Vlv~~P~y~~~~~~~~~-~G------------~~v~~v~~~~------~~~id~e~l~~~i~~--~~~k 220 (249)
+.+. .++|+|++.+++|..+...... .+ .+++.+|.+. ++..|++.+++.+++ .+++
T Consensus 114 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 193 (413)
T cd00610 114 KLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVA 193 (413)
T ss_pred HHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEE
Confidence 8763 5789999999999865443332 22 2355666442 244589999999874 2455
Q ss_pred EEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 221 CIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 221 ~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+|++...+|++|.+++.. +.+.++|++||
T Consensus 194 ~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 225 (413)
T cd00610 194 AVIVEPIQGEGGVIVPPPGYLKALRELCRKHG 225 (413)
T ss_pred EEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 555444456779876543 45778888875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-10 Score=103.67 Aligned_cols=151 Identities=20% Similarity=0.260 Sum_probs=110.1
Q ss_pred CCCCeeeccCC--CCCCCC-CHHHHHHHHh-ccC----CCCCCCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYGP-PPEVREALGQ-LKF----PYIYPDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~~-p~~v~~al~~-~~~----~~~Yp~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~~ 163 (249)
.+.+.||+..+ .+.++. ++.+.+++.+ +.. ...|+.....+|.+.++++++.+ +++|++++|+++++..++
T Consensus 41 dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al 120 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAF 120 (398)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHH
Confidence 45678999876 455665 6888888765 321 24576555678999999998853 479999999999999999
Q ss_pred HHhcCCC-CeEEEcCCCChhHHHHHHH-CCCE------------EEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCC
Q 025730 164 RCVLDPG-DKIVDCPPTFTMYEFDAAV-NGAA------------VVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNN 229 (249)
Q Consensus 164 ~~~~~pG-d~Vlv~~P~y~~~~~~~~~-~G~~------------v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnN 229 (249)
+....+| ++|+..+++|..+...+.. .|.. +..+|. .|++.+++.++ .++++|+++.++|
T Consensus 121 ~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~-~~~~aviiep~~~ 194 (398)
T PRK03244 121 KLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-----GDVDALAAAVD-DDTAAVFLEPIQG 194 (398)
T ss_pred HHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-----CCHHHHHHhhc-CCeEEEEEecccC
Confidence 9766676 5777778899766544332 2221 222221 37899999886 6899999999999
Q ss_pred ccccCCChH---HHHHHHhhhhC
Q 025730 230 PDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 230 PTG~~~~~~---e~i~~i~~~~~ 249 (249)
|+|.++++. +.+.++|++||
T Consensus 195 ~~G~~~~~~~~l~~l~~l~~~~~ 217 (398)
T PRK03244 195 EAGVVPPPAGYLAAAREITDRHG 217 (398)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcC
Confidence 999998765 46788999885
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-10 Score=104.23 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=91.8
Q ss_pred CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHH----HHHHHCCCEEEEecCCCCC
Q 025730 128 DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE----FDAAVNGAAVVKVPRKSDF 203 (249)
Q Consensus 128 ~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~----~~~~~~G~~v~~v~~~~~~ 203 (249)
.+....|++.+++++|. .+.|++++|. .++.+++.+++++||+|+++...|.... ..++..|++++.++. .
T Consensus 68 ~pt~~~le~~la~l~g~-~~~v~fsSG~-~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-~-- 142 (437)
T PRK05613 68 NPTVEALENRIASLEGG-VHAVAFASGQ-AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVEN-P-- 142 (437)
T ss_pred ChHHHHHHHHHHHHhCC-CeEEEeCCHH-HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECC-C--
Confidence 34578899999999986 3455555554 7888888888999999999999998543 344668999999972 1
Q ss_pred CCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 204 SLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 204 ~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++|+|++.++.||+|.+ .+.+.+.++|+++|
T Consensus 143 -~d~e~l~~~l~-~~tk~V~~e~~~Np~~~v-~di~~I~~la~~~g 185 (437)
T PRK05613 143 -DDPESWQAAVQ-PNTKAFFGETFANPQADV-LDIPAVAEVAHRNQ 185 (437)
T ss_pred -CCHHHHHHhCC-ccCeEEEEECCCCCCCcc-cCHHHHHHHHHHcC
Confidence 28999999998 689999999999999977 67788888999875
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-10 Score=101.03 Aligned_cols=108 Identities=13% Similarity=0.153 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEc---CCCChhHHHHHHHCCCEEEEecCCCCCCCCH
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDC---PPTFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~---~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~ 207 (249)
..+|++.+|+++|++++++++++|+++++..++.+++++||+|+++ .|+|..|...++..|++++.+ .|+
T Consensus 56 ~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~-------~~l 128 (346)
T TIGR03576 56 EEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAEYFES-------DEL 128 (346)
T ss_pred HHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHcCCEEecc-------CCH
Confidence 6789999999999999999999999999999999999999999975 478889999999999987443 245
Q ss_pred HHHHHhhccCCceEEEEcCCCCccccCCChHH--HHHHHhhhhC
Q 025730 208 ELIADAVEREKPKCIFLTSPNNPDGRFSWTSS--WIWGISSEHN 249 (249)
Q Consensus 208 e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e--~i~~i~~~~~ 249 (249)
++++. . .++++|+++ ++|++|.+++.++ .+..+|+++|
T Consensus 129 ~~l~~-~--~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~ 168 (346)
T TIGR03576 129 SELKK-I--DGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKE 168 (346)
T ss_pred HHHhh-C--cCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcC
Confidence 55432 2 467888874 5789999986554 4566777764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-10 Score=103.86 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=110.4
Q ss_pred CCCCeeeccCCCC-CCCCCHHHHHHHHh-cc-CCC-------CC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANEN-PYGPPPEVREALGQ-LK-FPY-------IY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~-~~~~p~~v~~al~~-~~-~~~-------~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
.+.+.|+|..+.. .+..++.+++++.+ +. ++. .| +.....+|+++|+++++. ++.|++++|.+ ++..
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~-~~~i~~s~G~~-a~~s 184 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT-PDSILYSYGLS-TIFS 184 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC-CCEEEECCHHH-HHHH
Confidence 3467899998754 56678888888765 32 222 23 233478999999999995 46899998887 5788
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCC--CCCCHHHHHHhhc-cCCc-eEEEEcCCCCccccCCCh
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD--FSLNVELIADAVE-REKP-KCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~--~~id~e~l~~~i~-~~~~-k~i~l~~PnNPTG~~~~~ 237 (249)
++.+++++||.|++....|..+...+...|.+++.++.++. +..+++++++..+ .+++ ++|++..++|+||.+.+
T Consensus 185 ai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~- 263 (481)
T PLN02822 185 VIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP- 263 (481)
T ss_pred HHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC-
Confidence 88899999999998888777777777889999999985421 1122222222111 1234 68888889999999965
Q ss_pred HHHHHHHhhhhC
Q 025730 238 SSWIWGISSEHN 249 (249)
Q Consensus 238 ~e~i~~i~~~~~ 249 (249)
.+.+.++|++||
T Consensus 264 L~~i~~l~~k~~ 275 (481)
T PLN02822 264 LDEIVRLKEKYR 275 (481)
T ss_pred HHHHHHHHHHcC
Confidence 677888999886
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=102.35 Aligned_cols=139 Identities=22% Similarity=0.318 Sum_probs=108.4
Q ss_pred CCHHHHHHHHhccCC-CCCC-CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh---hH
Q 025730 109 PPPEVREALGQLKFP-YIYP-DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT---MY 183 (249)
Q Consensus 109 ~p~~v~~al~~~~~~-~~Yp-~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~---~~ 183 (249)
+.+.+.+++.+...+ ..|. |+...+|++.+++++|. +..+++.+++.+-.++++.+++|++.|++..+.|. ..
T Consensus 7 ~~~~m~~a~~~a~~gd~~Yg~D~~~~~l~~~i~~l~g~--e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ 84 (290)
T PF01212_consen 7 PTPAMLEAMAAANVGDDAYGEDPTTARLEERIAELFGK--EAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDET 84 (290)
T ss_dssp S-HHEEHHHHHTTSB-CCTTSSHHHHHHHHHHHHHHTS--SEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSST
T ss_pred CCHHHHHHHHccccCCcccCCChhHHHHHHHHHHHcCC--CEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeecc
Confidence 557888888653322 3685 45688999999999994 56678999999999999999999999999999885 22
Q ss_pred HHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-----CCceEEEEcCCCCcc-ccCCChHHH--HHHHhhhhC
Q 025730 184 EFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-----EKPKCIFLTSPNNPD-GRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 184 ~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-----~~~k~i~l~~PnNPT-G~~~~~~e~--i~~i~~~~~ 249 (249)
.......|++++.++..+++.+|+++|+++++. .++++|+|++|+|-. |.+++.+++ +..+|++||
T Consensus 85 ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~g 158 (290)
T PF01212_consen 85 GAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHG 158 (290)
T ss_dssp THHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT
T ss_pred chhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCc
Confidence 333456999999999755588999999999975 457999999999975 778888755 788999986
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-10 Score=105.79 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=104.6
Q ss_pred CCeeeccCCC------CCCCCCHHHHHHHHhccC---C--CCCC-CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 95 EDIVKIDANE------NPYGPPPEVREALGQLKF---P--YIYP-DPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 95 ~~~I~L~~~~------~~~~~p~~v~~al~~~~~---~--~~Yp-~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
...++|+++. ++..+++.+.+++.+... . ..|. .....+|++++|+++|. ++.|++++|... ...+
T Consensus 100 ~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~-~~ai~~~~G~~a-n~~~ 177 (489)
T PLN02483 100 RRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK-PAAIVFGMGYAT-NSTI 177 (489)
T ss_pred ceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC-CcEEEECCHHHH-HHHH
Confidence 4567777763 222334677788776321 2 2364 45688999999999994 567888777554 4467
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc------CCc-----eEEEEcCC-CCc
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER------EKP-----KCIFLTSP-NNP 230 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~------~~~-----k~i~l~~P-nNP 230 (249)
+.+++++||.|++.+|+|..+...++..|++++.++.+ |.+++++.+++ +++ ++++++++ .|+
T Consensus 178 i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~ 252 (489)
T PLN02483 178 IPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSM 252 (489)
T ss_pred HHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCC
Confidence 77789999999999999999999999999999999853 34555554431 222 66666655 599
Q ss_pred cccCCChHHHHHHHhhhhC
Q 025730 231 DGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~~e~i~~i~~~~~ 249 (249)
+|.+ .+.+.+.++|++||
T Consensus 253 ~G~~-~~l~~I~~la~~~~ 270 (489)
T PLN02483 253 EGEL-CKLPEIVAVCKKYK 270 (489)
T ss_pred CCcc-cCHHHHHHHHHHcC
Confidence 9999 46666777888875
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=92.94 Aligned_cols=86 Identities=24% Similarity=0.501 Sum_probs=67.4
Q ss_pred CCCCeeeccCCCCC-----------------CCCCHHHHHHHHhccCCCCCCC-cChHHHHHHHHHHc----C----CCC
Q 025730 93 KPEDIVKIDANENP-----------------YGPPPEVREALGQLKFPYIYPD-PESRRLRAALAKDS----G----LES 146 (249)
Q Consensus 93 ~~~~~I~L~~~~~~-----------------~~~p~~v~~al~~~~~~~~Yp~-~g~~~lr~~la~~~----~----~~~ 146 (249)
.+..+|+|+.+||. +.+|+.+.+++..+ ..|++ .|..+||+++|+|+ | +++
T Consensus 41 np~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~~---a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~p 117 (153)
T PLN02994 41 NPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDI---ALFQDYHGLANFRKAIANFMAEARGGRVKFDA 117 (153)
T ss_pred CCCceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHHH---hcCCCCCCcHHHHHHHHHHHHHHhCCCCccch
Confidence 45668888888773 33334444444442 33744 58999999999997 4 468
Q ss_pred CCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh
Q 025730 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT 181 (249)
Q Consensus 147 ~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~ 181 (249)
++|++|+|+++++.+++.++++|||.|++++|+|.
T Consensus 118 d~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 118 DMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYA 152 (153)
T ss_pred hheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 89999999999999999999999999999999996
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-10 Score=102.66 Aligned_cols=117 Identities=12% Similarity=0.005 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCCCCCE--EEeCCHHHHHHHHHHHh--cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCH
Q 025730 132 RRLRAALAKDSGLESDHI--LVGCGADELIDLIMRCV--LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207 (249)
Q Consensus 132 ~~lr~~la~~~~~~~~~I--~vt~Ga~~~l~~~~~~~--~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~ 207 (249)
.+.++.+++++|++++++ ++|+|+||+....+... ..++++|++++-.|......++..|.+...|+.+.++.+|+
T Consensus 68 ~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~ 147 (380)
T PRK02769 68 RDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDY 147 (380)
T ss_pred HHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccCCCCcCcH
Confidence 467788889999876654 88999999977665433 35789999999999988888898999988898777888999
Q ss_pred HHHHHhhccC--CceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 208 ELIADAVERE--KPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 208 e~l~~~i~~~--~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++|++++++. ++.+|+++.++|+||.+ .+.+.+..+|+++|
T Consensus 148 ~~L~~~i~~~~~~t~lvv~t~gtt~tG~i-dpi~~I~~i~~~~g 190 (380)
T PRK02769 148 DDLISKIKENKNQPPIIFANIGTTMTGAI-DNIKEIQEILKKIG 190 (380)
T ss_pred HHHHHHHHhCCCCcEEEEEEeCCCCCccc-CCHHHHHHHHHHhC
Confidence 9999999732 38899999999999999 67788888998875
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-10 Score=101.86 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=105.7
Q ss_pred CCCCeeeccCC--CCCCCC-CHHHHHHHHh-ccC----CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYGP-PPEVREALGQ-LKF----PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~~-p~~v~~al~~-~~~----~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..+ .+.++. .+.+.+++.+ +.. ...|+.+...+|.+.++++.+ .+++++++|+++++.++++
T Consensus 37 dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~gg~eA~~~al~ 114 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSG--MDKVFFCNSGAEANEAAIK 114 (396)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhcC--CCEEEECCCcHHHHHHHHH
Confidence 45667899876 345665 4788888765 322 134554445567777777766 4799999999999999999
Q ss_pred HhcCCC-------CeEEEcCCCChhHHHHHHHCCCEEE----EecCCCCC----CCCHHHHHHhhccCCceEEEEcCCCC
Q 025730 165 CVLDPG-------DKIVDCPPTFTMYEFDAAVNGAAVV----KVPRKSDF----SLNVELIADAVEREKPKCIFLTSPNN 229 (249)
Q Consensus 165 ~~~~pG-------d~Vlv~~P~y~~~~~~~~~~G~~v~----~v~~~~~~----~id~e~l~~~i~~~~~k~i~l~~PnN 229 (249)
.+...+ ++|++..++|..+.......+.... ..+...++ ..|++++++++. .++++|+++.++|
T Consensus 115 ~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~-~~~~~vii~p~~~ 193 (396)
T PRK02627 115 LARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAIT-DKTAAVMLEPIQG 193 (396)
T ss_pred HHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcC-CCeEEEEEecccC
Confidence 765433 6799999999876655444332221 11121211 228999999996 6899999999999
Q ss_pred ccc-cCCChH--HHHHHHhhhhC
Q 025730 230 PDG-RFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 230 PTG-~~~~~~--e~i~~i~~~~~ 249 (249)
|+| .+++++ +.+.++|++||
T Consensus 194 ~~G~~~~~~~~l~~l~~l~~~~~ 216 (396)
T PRK02627 194 EGGVNPADKEYLQALRELCDENG 216 (396)
T ss_pred CCCCccCCHHHHHHHHHHHHHcC
Confidence 999 465554 45778898875
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=101.27 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=75.1
Q ss_pred CCC-CC-cChHHHHHHHHHHcCCCCCCEEEeCCHH-HHHHHHHH-Hh----cC--------CCCeEEEcCCCChhHHHHH
Q 025730 124 YIY-PD-PESRRLRAALAKDSGLESDHILVGCGAD-ELIDLIMR-CV----LD--------PGDKIVDCPPTFTMYEFDA 187 (249)
Q Consensus 124 ~~Y-p~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~-~~l~~~~~-~~----~~--------pGd~Vlv~~P~y~~~~~~~ 187 (249)
.+| .. .|.+++|+.+++++|+++++|+++..++ ..++.++. ++ .. +.-+.|+|.|+|..+..++
T Consensus 62 RNY~G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~ 141 (425)
T PF12897_consen 62 RNYPGGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAIT 141 (425)
T ss_dssp TSS-S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHH
T ss_pred cCCCCccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHH
Confidence 788 43 5899999999999999999998855543 44433322 22 11 1247899999999999999
Q ss_pred HHCCCEEEEecCCCCCCCCHHHHHHhhc-cCCceEEEEcCC--CCccccCCChHHH
Q 025730 188 AVNGAAVVKVPRKSDFSLNVELIADAVE-REKPKCIFLTSP--NNPDGRFSWTSSW 240 (249)
Q Consensus 188 ~~~G~~v~~v~~~~~~~id~e~l~~~i~-~~~~k~i~l~~P--nNPTG~~~~~~e~ 240 (249)
+.+|++.+.||+.++ ++|.|.+++.+. +..+|.|+ |-| +||||.+|+++..
T Consensus 142 E~~Giemi~VpM~~d-GPDmD~Ve~LV~~D~svKGiW-cVP~ySNPtG~tySde~v 195 (425)
T PF12897_consen 142 EHFGIEMIPVPMTED-GPDMDMVEELVAEDPSVKGIW-CVPKYSNPTGITYSDEVV 195 (425)
T ss_dssp HHCT-EEEEEEEETT-EE-HHHHHHHTHTSTTEEEEE-E-SSS-TTT-----HHHH
T ss_pred HhhCcEEEecCCCCC-CCCHHHHHHHHhcCCccceEE-eCCCccCCCCccCCHHHH
Confidence 999999999998554 799999999984 46789998 555 7999999877643
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-10 Score=101.29 Aligned_cols=116 Identities=26% Similarity=0.298 Sum_probs=94.8
Q ss_pred CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHH----HCCCEEEEecCC
Q 025730 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAA----VNGAAVVKVPRK 200 (249)
Q Consensus 125 ~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~----~~G~~v~~v~~~ 200 (249)
||.++....|.+.|++..| .+.++++++++.++..++.+++++||+|++....|......++ ..|.++.+++.
T Consensus 51 R~gnPt~~~le~~la~Le~--g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~- 127 (386)
T PF01053_consen 51 RYGNPTVRALEQRLAALEG--GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP- 127 (386)
T ss_dssp TTC-HHHHHHHHHHHHHHT---SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST-
T ss_pred ccccccHHHHHHHHHHhhc--ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc-
Confidence 3345567889999999998 4678999999999999999999999999999999986554444 37999999864
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
-|+++++++++ +++++||+.+|.||+..+ .+.+.+.++++++|
T Consensus 128 ----~d~~~l~~~l~-~~t~~v~~EspsNP~l~v-~Dl~~i~~~a~~~g 170 (386)
T PF01053_consen 128 ----TDLEALEAALR-PNTKLVFLESPSNPTLEV-PDLEAIAKLAKEHG 170 (386)
T ss_dssp ----TSHHHHHHHHC-TTEEEEEEESSBTTTTB----HHHHHHHHHHTT
T ss_pred ----hhHHHHHhhcc-ccceEEEEEcCCCccccc-ccHHHHHHHHHHhC
Confidence 37899999998 699999999999999999 67888888999875
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.2e-10 Score=101.34 Aligned_cols=118 Identities=15% Similarity=0.036 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHcCCCCCCE--EEeCCHHHHHHHHHHHhc--CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCC
Q 025730 131 SRRLRAALAKDSGLESDHI--LVGCGADELIDLIMRCVL--DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN 206 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I--~vt~Ga~~~l~~~~~~~~--~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id 206 (249)
..++++.+++++|.+++++ ++|+|+|++....+.... .+++.|+++.-.|......++..|.++..||.+.++.+|
T Consensus 68 e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id 147 (374)
T PLN03032 68 EVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPTLPSGEID 147 (374)
T ss_pred HHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCc
Confidence 3568888888899988876 999999999988876543 355689999999988888899999999999988889999
Q ss_pred HHHHHHhhccC--CceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 207 VELIADAVERE--KPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 207 ~e~l~~~i~~~--~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+++|++++++. ++.+|+++..||+||.+ ++.+.+..+|+++|
T Consensus 148 ~~~L~~~i~~~~~~~~lvv~tagtt~tG~i-dpi~eI~~i~~~~g 191 (374)
T PLN03032 148 YDDLERALAKNRDKPAILNVNIGTTVKGAV-DDLDRILRILKELG 191 (374)
T ss_pred HHHHHHHHHHcCCCCEEEEEEecCcCCccC-CCHHHHHHHHHHhC
Confidence 99999999732 46788888899999999 78888899999874
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=111.86 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=118.2
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh---ccCCCCC-CCc---C----hHHHHHHHHHHcCCCCCCEEEeCCHH----HHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ---LKFPYIY-PDP---E----SRRLRAALAKDSGLESDHILVGCGAD----ELI 159 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~---~~~~~~Y-p~~---g----~~~lr~~la~~~~~~~~~I~vt~Ga~----~~l 159 (249)
..+|+|++-.+-+.+ .+.+.... ....+-| |.. | ..++|+.+++++|. ++|.++.+++ +++
T Consensus 525 ~~~~plgsctmk~n~--~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g~--~~v~f~pnaga~ge~a~ 600 (993)
T PLN02414 525 HSMIPLGSCTMKLNA--TTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCEITGF--DSFSLQPNAGAAGEYAG 600 (993)
T ss_pred cCCccCcccccccCc--hhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--CeEEEcCCCcHHHHHHH
Confidence 345777776666643 22222222 2233555 431 3 45889999999996 8999999999 999
Q ss_pred HHHHHHhcCC-CC----eEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc--CCceEEEEcCCCCccc
Q 025730 160 DLIMRCVLDP-GD----KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER--EKPKCIFLTSPNNPDG 232 (249)
Q Consensus 160 ~~~~~~~~~p-Gd----~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~--~~~k~i~l~~PnNPTG 232 (249)
.++++.+.++ || +|+++...|......+...|++++.++.++++.+|+++|+++++. .++++|++++|||-+|
T Consensus 601 ~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg 680 (993)
T PLN02414 601 LMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGV 680 (993)
T ss_pred HHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCcccc
Confidence 9999999876 88 899999999988888888999999999888889999999999984 3689999999999988
Q ss_pred cCCChHHHHHHHhhhhC
Q 025730 233 RFSWTSSWIWGISSEHN 249 (249)
Q Consensus 233 ~~~~~~e~i~~i~~~~~ 249 (249)
.. .+.+.+.++|+++|
T Consensus 681 ~e-~~I~eI~~iah~~G 696 (993)
T PLN02414 681 YE-EGIDEICDIIHDNG 696 (993)
T ss_pred cc-chHHHHHHHHHHcC
Confidence 88 67788888898875
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=100.37 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=89.4
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh----hHHHHHHHCCCEEEEecCCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT----MYEFDAAVNGAAVVKVPRKSD 202 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~----~~~~~~~~~G~~v~~v~~~~~ 202 (249)
..+...+|.+.++++.|. +..+++++++.+|.+++.+++++||+|+++.+.|. .+...+...|++++.++.++.
T Consensus 62 ~~P~~~~lE~~la~leg~--~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~ 139 (384)
T PRK06434 62 GNPTVQAFEEKYAVLENA--EHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRL 139 (384)
T ss_pred CChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCCh
Confidence 455678999999999984 56788888899999999999999999999887665 333555668999999986432
Q ss_pred CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 ~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
..++ ++..++|+|++.+|+|||+.+ .+.+.+.++|++++
T Consensus 140 ~~~~-------l~~~~tklv~~e~~snpt~~v-~Di~~I~~la~~~~ 178 (384)
T PRK06434 140 NSLD-------FDPSNYDLIYAESITNPTLKV-PDIKNVSSFCHEND 178 (384)
T ss_pred hhee-------ecCCCeeEEEEEcCCCCCcee-ecHHHHHHHHHHcC
Confidence 2222 232478999999999999998 67788888998875
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.8e-09 Score=97.40 Aligned_cols=135 Identities=13% Similarity=0.167 Sum_probs=102.8
Q ss_pred HHHHHH-HHhccCC-CCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh-hHHHH
Q 025730 111 PEVREA-LGQLKFP-YIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT-MYEFD 186 (249)
Q Consensus 111 ~~v~~a-l~~~~~~-~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~-~~~~~ 186 (249)
..+.++ +..+..+ ..| .++...+|.+++++++|. ++++.+++++.++++++...++|||.| +.++|. .+...
T Consensus 50 ~aMs~~q~a~~~~GDe~yag~~s~~~lE~~va~~~G~--~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ah 125 (450)
T TIGR02618 50 NAMSDKQWAGLMMGDEAYAGSRNFYHLERTVRELYGF--KYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYH 125 (450)
T ss_pred HHHHHHHHHHhhhcchhhcCCCcHHHHHHHHHHHHCC--CeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHH
Confidence 455555 5543222 458 567789999999999994 579999999999999887789999987 667774 45544
Q ss_pred HHHCCCEEEEecC----------CCCCCCCHHHHHHhhccC---CceEEEEcCCCCcc-ccCCChH--HHHHHHhhhhC
Q 025730 187 AAVNGAAVVKVPR----------KSDFSLNVELIADAVERE---KPKCIFLTSPNNPD-GRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 187 ~~~~G~~v~~v~~----------~~~~~id~e~l~~~i~~~---~~k~i~l~~PnNPT-G~~~~~~--e~i~~i~~~~~ 249 (249)
.+..|+.++.++. ..++.+|++++++++++. ++++|.+.+++|-. |..++.. +.+..+|++||
T Consensus 126 Ie~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~G 204 (450)
T TIGR02618 126 QEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHG 204 (450)
T ss_pred HHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcC
Confidence 6889997777743 235788999999999742 45688888999865 7887654 66889999986
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-09 Score=96.73 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=90.6
Q ss_pred CCC-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCC
Q 025730 126 YPD-PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFS 204 (249)
Q Consensus 126 Yp~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~ 204 (249)
|.. ....+|++++|+++|.+ +.+++++|.+..+ .++.+++++||.|++.++.|..+...+...+++++.++..+ .
T Consensus 39 yg~~~~~~~LE~~lA~~~g~e-~al~~~sG~~a~~-~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d--~ 114 (392)
T PLN03227 39 YGTIDAHLELEQCMAEFLGTE-SAILYSDGASTTS-STVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHND--M 114 (392)
T ss_pred cCChHHHHHHHHHHHHHhCCC-cEEEecCcHHHHH-HHHHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCC--H
Confidence 543 35789999999999975 6788888877666 66667899999999999999988777777888888776431 1
Q ss_pred CCHHHHHHhhc----------cCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 205 LNVELIADAVE----------REKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 205 id~e~l~~~i~----------~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
-|++.+.+.+. ..++++|++.++.||+|.+. +.+.+.++|++||
T Consensus 115 ~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~-~l~~i~~l~~~~g 168 (392)
T PLN03227 115 KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLA-PLKELVALKEEFH 168 (392)
T ss_pred HHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCccc-CHHHHHHHHHHcC
Confidence 13444444442 13578999999999999995 4667788999886
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=93.98 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=101.3
Q ss_pred CCeeeccCCC-CCCCCCHHHHHHHHh-cc-CCC-------CC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANE-NPYGPPPEVREALGQ-LK-FPY-------IY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~-~~~~~p~~v~~al~~-~~-~~~-------~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.++++|+.|+ ..+...|.+++++.+ +. .+. .| ..+...+|++.+++++|. ++ .++.++++++...++
T Consensus 45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~-~~-~l~~~sG~~an~~ai 122 (402)
T TIGR01821 45 KDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK-ES-ALVFTSGYVANDATL 122 (402)
T ss_pred eeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC-Ce-EEEECchHHHHHHHH
Confidence 3467777664 556778888888865 32 111 12 122367899999999994 33 444455577888888
Q ss_pred HHhcC--CCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc---CCceEEEEcCCCCccccCCChH
Q 025730 164 RCVLD--PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 164 ~~~~~--pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
..+.. +||.|+.....|......+...|+++..++. .|++++++.++. .++++|++++|+||||.+. +.
T Consensus 123 ~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~-~l 196 (402)
T TIGR01821 123 ATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-----NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIA-PI 196 (402)
T ss_pred HHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc-CH
Confidence 77654 6777777666676666666778887766643 266777776642 3578999999999999995 56
Q ss_pred HHHHHHhhhhC
Q 025730 239 SWIWGISSEHN 249 (249)
Q Consensus 239 e~i~~i~~~~~ 249 (249)
+.+.++|++||
T Consensus 197 ~~i~~l~~~~~ 207 (402)
T TIGR01821 197 EEICDLADKYG 207 (402)
T ss_pred HHHHHHHHHcC
Confidence 77778898875
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.4e-09 Score=94.75 Aligned_cols=117 Identities=19% Similarity=0.162 Sum_probs=95.8
Q ss_pred CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH----HHHHCCCEEEEecCC
Q 025730 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF----DAAVNGAAVVKVPRK 200 (249)
Q Consensus 125 ~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~----~~~~~G~~v~~v~~~ 200 (249)
++.++....|.++++.+-| .++.+.+++++.+|..++..++++||+|+++...|..... ..+.+|.++.+++..
T Consensus 59 R~~nPT~~~lE~~~a~LEg--~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~ 136 (396)
T COG0626 59 RTGNPTRDALEEALAELEG--GEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPG 136 (396)
T ss_pred cCCCccHHHHHHHHHHhhC--CCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCC
Confidence 3356678889999999987 6778889999999999999999999999999999974333 334489999988742
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.+++++++..+++|+||+-+|.|||-.+ .+...+.++++++|
T Consensus 137 -----~~~~~~~~~~~~~tk~v~lEtPsNP~l~v-~DI~~i~~~A~~~g 179 (396)
T COG0626 137 -----DDEALEAAIKEPNTKLVFLETPSNPLLEV-PDIPAIARLAKAYG 179 (396)
T ss_pred -----ChHHHHHHhcccCceEEEEeCCCCccccc-ccHHHHHHHHHhcC
Confidence 44667777663589999999999999999 68888899998875
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.1e-09 Score=94.31 Aligned_cols=154 Identities=18% Similarity=0.289 Sum_probs=105.6
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+. ..++ ..|.+.+++.+ +... ..|..+...+|.+.|++..+ .+++++++|+++++..+++
T Consensus 29 dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sGseA~~~al~ 106 (389)
T PRK01278 29 DGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENSF--ADKVFFTNSGAEAVECAIK 106 (389)
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhCC--CCEEEEcCCcHHHHHHHHH
Confidence 355678887742 2232 45777877765 3321 22333335667777777664 4689999999999999988
Q ss_pred Hh----cCCCC----eEEEcCCCChhHHHHHHHCCCEEEEe----cCCCCCC----CCHHHHHHhhccCCceEEEEcCCC
Q 025730 165 CV----LDPGD----KIVDCPPTFTMYEFDAAVNGAAVVKV----PRKSDFS----LNVELIADAVEREKPKCIFLTSPN 228 (249)
Q Consensus 165 ~~----~~pGd----~Vlv~~P~y~~~~~~~~~~G~~v~~v----~~~~~~~----id~e~l~~~i~~~~~k~i~l~~Pn 228 (249)
.. ..+|| +|++.++.|..+...+...+...... +...++. .|++.++++++ .++++|+++.++
T Consensus 107 ~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~avivep~~ 185 (389)
T PRK01278 107 TARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAIT-PNTAAILIEPIQ 185 (389)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhC-CCeEEEEEeccc
Confidence 65 45676 99999999987766665544433222 1112222 58999999997 589999988778
Q ss_pred Cccc-cCCChH--HHHHHHhhhhC
Q 025730 229 NPDG-RFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 229 NPTG-~~~~~~--e~i~~i~~~~~ 249 (249)
||+| .+++.+ +.+.++|++||
T Consensus 186 ~~~G~~~~~~~~l~~l~~l~~~~g 209 (389)
T PRK01278 186 GEGGIRPAPDEFLKGLRQLCDENG 209 (389)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcC
Confidence 8898 565665 44788999886
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-09 Score=91.36 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=100.8
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHH----hc-------cCCCCCC-CcChHHHHHHHHHHc------CCCCCCEEEeCC
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALG----QL-------KFPYIYP-DPESRRLRAALAKDS------GLESDHILVGCG 154 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~----~~-------~~~~~Yp-~~g~~~lr~~la~~~------~~~~~~I~vt~G 154 (249)
..+..|-|+.|.+.. . |++.+.++ ++ +..-+|. ..|...|.+++++++ ++..++|.+|+|
T Consensus 28 rt~g~imLggGNPa~-i-Pem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnG 105 (417)
T COG3977 28 RTPGAIMLGGGNPAR-I-PEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNG 105 (417)
T ss_pred cCCCceeeCCCCccc-C-hhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCC
Confidence 345578887766543 3 34433332 21 1225784 457888888888875 467899999999
Q ss_pred HHHHHHHHHHHhcC---CC--CeEEE-cCCCChhHHHHHHHCCCEEEEe-c---CC----CCCCCCHHHHHHhhccCCce
Q 025730 155 ADELIDLIMRCVLD---PG--DKIVD-CPPTFTMYEFDAAVNGAAVVKV-P---RK----SDFSLNVELIADAVEREKPK 220 (249)
Q Consensus 155 a~~~l~~~~~~~~~---pG--d~Vlv-~~P~y~~~~~~~~~~G~~v~~v-~---~~----~~~~id~e~l~~~i~~~~~k 220 (249)
++.+++-++..+.. .| .+|+. ..|.|..|....-.-.. .+.+ | .. -.+.+|++++.- . +++.
T Consensus 106 SQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~-fVs~kP~iel~~~g~FKY~vDF~~l~i--~-e~~g 181 (417)
T COG3977 106 SQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDL-FVSAKPNIELLPAGQFKYHVDFEHLHI--G-ESTG 181 (417)
T ss_pred ccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccc-eeeccCCcccccccceeeccCHHHccc--c-cccc
Confidence 99999999987743 34 34544 48888888765432111 2222 2 11 125678888754 2 6789
Q ss_pred EEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 221 CIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 221 ~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+|+++.|.||||.+++++|+ +..++++||
T Consensus 182 ~ic~SRPtNPTGNVlTdeE~~kldalA~~~g 212 (417)
T COG3977 182 AICVSRPTNPTGNVLTDEELAKLDALARQHG 212 (417)
T ss_pred eEEecCCCCCCCCcccHHHHHHHHHHhhhcC
Confidence 99999999999999999977 566888775
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-08 Score=91.35 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=101.4
Q ss_pred CCeeeccCCC-CCCCCCHHHHHHHHh-cc-CC-------CCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANE-NPYGPPPEVREALGQ-LK-FP-------YIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~-~~~~~p~~v~~al~~-~~-~~-------~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.++++|+.|+ -.++.+|.+.+++.+ +. .+ ..| +.+...+|++.+++++|. ++.+++++| .++...++
T Consensus 46 ~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~-~~~~~~~sG-~~an~~ai 123 (407)
T PRK09064 46 REVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGK-EAALVFTSG-YVSNDATL 123 (407)
T ss_pred ceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCC-CcEEEECcH-HHHHHHHH
Confidence 4578887764 456778889888865 32 11 123 344578899999999994 455666666 45655555
Q ss_pred HHhcC--CCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc---CCceEEEEcCCCCccccCCChH
Q 025730 164 RCVLD--PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 164 ~~~~~--pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
..++. +++.|+.....|......+...|+++..++. .|++++++.++. .++++|++++|+||+|.+. +.
T Consensus 124 ~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~-~l 197 (407)
T PRK09064 124 STLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-----NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIA-PI 197 (407)
T ss_pred HHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-----CCHHHHHHHHHhccCCCCeEEEEeCCCCCCcccc-CH
Confidence 55543 7777766666666655566667887766653 367777777652 4689999999999999985 56
Q ss_pred HHHHHHhhhhC
Q 025730 239 SWIWGISSEHN 249 (249)
Q Consensus 239 e~i~~i~~~~~ 249 (249)
+.+.++|+++|
T Consensus 198 ~~i~~l~~~~~ 208 (407)
T PRK09064 198 AEICDLADKYN 208 (407)
T ss_pred HHHHHHHHHcC
Confidence 77778898875
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=87.67 Aligned_cols=144 Identities=16% Similarity=0.193 Sum_probs=113.3
Q ss_pred CCCCCHHHHHHHHhccCCCCCCCc--ChHHHHHHHHHHcCCCCC-CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCC-Ch
Q 025730 106 PYGPPPEVREALGQLKFPYIYPDP--ESRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPPT-FT 181 (249)
Q Consensus 106 ~~~~p~~v~~al~~~~~~~~Yp~~--g~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~-y~ 181 (249)
|...|+.+++++..-..++.-|+- -..++++-+...|..... -.++...++.+++.++-.++.|||.|++..-+ |.
T Consensus 25 Psnl~~~V~~A~~~~~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg 104 (385)
T KOG2862|consen 25 PSNLSGRVQEAMSRPSLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWG 104 (385)
T ss_pred CcCCCHHHHHhhcCCccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHH
Confidence 444678888888763333444542 256777777777765443 34455556789999999999999999976544 54
Q ss_pred -hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 182 -MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 182 -~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+..+++.+|++|..|+.+.+....++.|.+++.++++++|++++-..-||+..+..+...++|++|+
T Consensus 105 ~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~ 173 (385)
T KOG2862|consen 105 QRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHE 173 (385)
T ss_pred HHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCC
Confidence 67788888999999999888888999999999999999999999999999999555789999999874
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=99.64 Aligned_cols=150 Identities=15% Similarity=0.051 Sum_probs=104.5
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhc-c----CC-CCCCC-----cChHHHHHHHHHHcCCCCC--CEEEeCCHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQL-K----FP-YIYPD-----PESRRLRAALAKDSGLESD--HILVGCGADELIDLI 162 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~-~----~~-~~Yp~-----~g~~~lr~~la~~~~~~~~--~I~vt~Ga~~~l~~~ 162 (249)
+++.|+.+.....++..+.+++... . .. ..|.. ....+.|+.+++++|.+++ .|++|.|+|++|+++
T Consensus 34 ~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlv 113 (805)
T PLN02724 34 GVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLV 113 (805)
T ss_pred CCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHH
Confidence 3689999876654555666665432 1 11 11211 1256899999999999765 489999999999999
Q ss_pred HHHh-cCCCCeEEEcCCCCh---hHHHHHHHCCCEEEEecCC--------CCCCCCH--HHHHHhhc---------cCCc
Q 025730 163 MRCV-LDPGDKIVDCPPTFT---MYEFDAAVNGAAVVKVPRK--------SDFSLNV--ELIADAVE---------REKP 219 (249)
Q Consensus 163 ~~~~-~~pGd~Vlv~~P~y~---~~~~~~~~~G~~v~~v~~~--------~~~~id~--e~l~~~i~---------~~~~ 219 (249)
+..+ +++||+|++..-.|. .+...++..|+++..++.+ ....+++ +++++.++ ..++
T Consensus 114 a~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t 193 (805)
T PLN02724 114 GETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAY 193 (805)
T ss_pred HHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCc
Confidence 9887 789999999877775 3334455679999998864 2233433 56666531 1456
Q ss_pred eEEEEcCCCCccccCCChHHHHHHHhh
Q 025730 220 KCIFLTSPNNPDGRFSWTSSWIWGISS 246 (249)
Q Consensus 220 k~i~l~~PnNPTG~~~~~~e~i~~i~~ 246 (249)
++|.+++-+|-||.+++.+ ++..+++
T Consensus 194 ~LVa~~~vsN~tG~i~pi~-~i~~~~~ 219 (805)
T PLN02724 194 NLFAFPSECNFSGAKFPLD-LVKLIKD 219 (805)
T ss_pred ceEEEEccccCCCCcCCHH-HHHHHHH
Confidence 8999999999999997665 5555544
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-08 Score=90.37 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=97.8
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH----HHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~ 199 (249)
.+++++....|...+++..|. .+.++.++++.++..++..++..|+++++.+..|.....++ ..+|++...++.
T Consensus 72 sr~~nPt~~~le~~iaal~ga--~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~ 149 (409)
T KOG0053|consen 72 SRSGNPTRDVLESGIAALEGA--AHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV 149 (409)
T ss_pred ccCCCCchHHHHHHHHHHhCC--ceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech
Confidence 344566778899999999984 45888888899999999999999999999999997544433 347888888875
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ |+++++++++ +++++||+-+|.||+..+ ++.+.+.++|+++|
T Consensus 150 ~-----~~~~~~~~i~-~~t~~V~~ESPsNPll~v-~DI~~l~~la~~~g 192 (409)
T KOG0053|consen 150 D-----DLKKILKAIK-ENTKAVFLESPSNPLLKV-PDIEKLARLAHKYG 192 (409)
T ss_pred h-----hHHHHHHhhc-cCceEEEEECCCCCcccc-ccHHHHHHHHhhCC
Confidence 3 6789999998 589999999999999999 78899999999875
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=93.54 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHcCCC-C-CCEEE--eCCHHHHHHHHHHHhc--------CCC-----CeEEEcCCCChhHHHHHHHCCCE
Q 025730 131 SRRLRAALAKDSGLE-S-DHILV--GCGADELIDLIMRCVL--------DPG-----DKIVDCPPTFTMYEFDAAVNGAA 193 (249)
Q Consensus 131 ~~~lr~~la~~~~~~-~-~~I~v--t~Ga~~~l~~~~~~~~--------~pG-----d~Vlv~~P~y~~~~~~~~~~G~~ 193 (249)
..+.++.+++++|++ + +++.. |+|++|+..+++.+.. ..| -.|+++.-.|..+...++..|++
T Consensus 82 e~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~ 161 (431)
T TIGR01788 82 ENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVE 161 (431)
T ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCce
Confidence 356788888889987 3 45554 8999999998876542 112 36899999999999999989999
Q ss_pred EEEecCCCC-CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 194 VVKVPRKSD-FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 194 v~~v~~~~~-~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
+..++.+.+ +.+|+++|+++++ +++.+|+++..||.||.+ ++.+.+..+|+++
T Consensus 162 v~~i~~d~~~~~vd~~~L~~~i~-~~t~lV~~t~g~t~tG~i-dpi~~I~~i~~~~ 215 (431)
T TIGR01788 162 LREVPMDPGRYVIDPEQVVEAVD-ENTIGVVCILGTTYTGEY-EDVKALNDALDEY 215 (431)
T ss_pred eEEEecCCCceeeCHHHHHHHHh-hCCeEEEEEeCCCCCccc-CCHHHHHHHHHHH
Confidence 999997654 5799999999998 678999999999999999 7888888899887
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.3e-08 Score=85.16 Aligned_cols=145 Identities=20% Similarity=0.274 Sum_probs=108.1
Q ss_pred CCCCCCCCHHHHHHHHhcc--CCCCCCC-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCC
Q 025730 103 NENPYGPPPEVREALGQLK--FPYIYPD-PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179 (249)
Q Consensus 103 ~~~~~~~p~~v~~al~~~~--~~~~Yp~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~ 179 (249)
++|--++.+++.++|.... ....|.+ +...++.+.+++.+|. ..++++.++|++..+.+.+.++||+.|++..-.
T Consensus 6 SDn~~g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~a 83 (342)
T COG2008 6 SDNVAGPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHCQPGESVICHETA 83 (342)
T ss_pred cCccCCCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHhcCCCCeEEEeccc
Confidence 3555667789999998743 3367864 4578899999999996 789999999999999999999999999999888
Q ss_pred Chh-HHH-HHHH-CCCEEEEecCCCCCCCCHHHHHHhhccC-----CceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 180 FTM-YEF-DAAV-NGAAVVKVPRKSDFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 180 y~~-~~~-~~~~-~G~~v~~v~~~~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
|.. ++. ..+. .++..+.+..+.++.+++|+|++++... .+.++++-|.+|--|++|+.+++ +..+|++||
T Consensus 84 Hi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~ 163 (342)
T COG2008 84 HIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHG 163 (342)
T ss_pred cceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhC
Confidence 852 221 1122 3444444445577899999999987632 24455555555578999999866 888999986
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=87.11 Aligned_cols=147 Identities=16% Similarity=0.087 Sum_probs=100.6
Q ss_pred CCeeeccCCCC-CCCCCHHHHHHHHh-cc-CCCC-------CC-CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANEN-PYGPPPEVREALGQ-LK-FPYI-------YP-DPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~~-~~~~p~~v~~al~~-~~-~~~~-------Yp-~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.++++|..|+- .+...+++++++.+ +. .+.. +. .....+|++.+++++|. +..++.++++++...++
T Consensus 45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--~~~~~~~SG~~An~~ai 122 (406)
T PRK13393 45 REVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK--EAALLFTSGYVSNWAAL 122 (406)
T ss_pred ccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC--CcEEEeCCcHHHHHHHH
Confidence 35677777643 23456788888765 32 1111 11 11257899999999985 44444444556888888
Q ss_pred HHhcC--CCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc---CCceEEEEcCCCCccccCCChH
Q 025730 164 RCVLD--PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 164 ~~~~~--pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
..+.. +||.|++....|......+...|.++..++. .|++.+++.++. .++++|++++++|++|.+. +.
T Consensus 123 ~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~-~l 196 (406)
T PRK13393 123 STLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-----NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIA-PI 196 (406)
T ss_pred HHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-----CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchh-CH
Confidence 76655 7887777777777766677778888877763 256666666542 3678999999999999995 56
Q ss_pred HHHHHHhhhhC
Q 025730 239 SWIWGISSEHN 249 (249)
Q Consensus 239 e~i~~i~~~~~ 249 (249)
+.+..+|+++|
T Consensus 197 ~~i~~l~~~~~ 207 (406)
T PRK13393 197 AEICDVAEKHG 207 (406)
T ss_pred HHHHHHHHHcC
Confidence 77788898875
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=88.63 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=98.1
Q ss_pred CCHHHHHHHHh-ccC-C-CCC--CC--c--ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCC
Q 025730 109 PPPEVREALGQ-LKF-P-YIY--PD--P--ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179 (249)
Q Consensus 109 ~p~~v~~al~~-~~~-~-~~Y--p~--~--g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~ 179 (249)
.++.+.+++.+ +.. . ..| .. . ....+++.+++++|.+ ..+++++++.++.+++.. +.+||+|++....
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae--~alvv~sg~aAi~l~l~~-l~~GdeVIvs~~e 169 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAE--DALVVNNNAAAVLLALNT-LAKGKEVIVSRGE 169 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHH-hCCcCEEEECCCh
Confidence 56788888865 221 1 112 11 1 1478999999999964 355667777888888854 6899999999876
Q ss_pred Chh------HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcc--cc-CCChHHHHHHHhhhhC
Q 025730 180 FTM------YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPD--GR-FSWTSSWIWGISSEHN 249 (249)
Q Consensus 180 y~~------~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPT--G~-~~~~~e~i~~i~~~~~ 249 (249)
|.. +....+..|++++.++.+. ..|+++++++++ ++|++|++.+++|++ |. ...+.+.+..+|++||
T Consensus 170 ~v~~ggs~~i~~~~~~~G~~~~~v~~~~--~~~l~dle~aI~-~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g 245 (454)
T TIGR00474 170 LVEIGGSFRIPDVMEQSGAKLVEVGTTN--RTHLKDYEDAIT-ENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHG 245 (454)
T ss_pred hhhhcchhhHHHHHHHcCCEEEEeCCCC--CCCHHHHHHhcC-cCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcC
Confidence 432 2345567899999997532 357999999998 789999999999995 64 2356778888999885
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=88.03 Aligned_cols=135 Identities=18% Similarity=0.165 Sum_probs=98.4
Q ss_pred CCHHHHHHHHh-ccCCC--CC--C--CcC--hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCC
Q 025730 109 PPPEVREALGQ-LKFPY--IY--P--DPE--SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179 (249)
Q Consensus 109 ~p~~v~~al~~-~~~~~--~Y--p--~~g--~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~ 179 (249)
.++.+.+++.+ +.... .| . ..+ ...+++.+++++|.+ +.+++++++.++.+++.+ +.+||+|+++...
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae--~a~vv~sgtaAl~l~l~~-l~~GdeVIvs~~e 174 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAE--DALVVNNNAAAVLLALNA-LAAGKEVIVSRGE 174 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHH-hCCCCEEEEcchh
Confidence 56788888865 22111 11 1 112 468999999999954 577788888999988865 5899999998764
Q ss_pred Chh------HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCc--cccC-CChHHHHHHHhhhhC
Q 025730 180 FTM------YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNP--DGRF-SWTSSWIWGISSEHN 249 (249)
Q Consensus 180 y~~------~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNP--TG~~-~~~~e~i~~i~~~~~ 249 (249)
+.. +....+..|++++.++.++ ..++++++++++ +++++|++++++|| +|.. ..+.+.+..+|++||
T Consensus 175 ~~~~ggs~~i~~~~~~~G~~l~~v~~~~--~t~~~dle~aI~-~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~g 250 (464)
T PRK04311 175 LVEIGGAFRIPDVMRQAGARLVEVGTTN--RTHLRDYEQAIN-ENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHG 250 (464)
T ss_pred hhhcCcchhhHHHHHHCCcEEEEECCCC--CCCHHHHHHhcC-ccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcC
Confidence 431 2335567899999998533 357999999998 78999999999998 4532 246778889999886
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.8e-08 Score=82.78 Aligned_cols=138 Identities=23% Similarity=0.273 Sum_probs=110.7
Q ss_pred CCHHHHHHHHhccCCC---CC---------CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEc
Q 025730 109 PPPEVREALGQLKFPY---IY---------PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDC 176 (249)
Q Consensus 109 ~p~~v~~al~~~~~~~---~Y---------p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~ 176 (249)
.+++..+++.+...++ .| ..+-...+.+.+++|+|. |.+-+|+|+.++=+.++++++++||.|++.
T Consensus 29 Lt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~--D~~R~t~GARe~KfavMhal~~~gd~vV~D 106 (382)
T COG1103 29 LTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGM--DEVRVTAGAREAKFAVMHALCKEGDWVVVD 106 (382)
T ss_pred CCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCC--ceeeecccchhhHHHHHHHhccCCCEEEEc
Confidence 4677778776532211 01 113367888999999994 578899999999999999999999999999
Q ss_pred CCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhcc------CCceEEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 177 PPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVER------EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 177 ~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~------~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
...+......++.+|.++..||.. .++.+++|...+.+++ ..+.+.++++|..-.|.+ ++.+.++.||+++
T Consensus 107 ~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl-~Dakkva~ic~e~ 185 (382)
T COG1103 107 SLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNL-ADAKKVAKICREY 185 (382)
T ss_pred CcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCc-hhhHHHHHHHHHc
Confidence 999877777889999999999942 4688899888777643 237888999999889998 8899999999997
Q ss_pred C
Q 025730 249 N 249 (249)
Q Consensus 249 ~ 249 (249)
+
T Consensus 186 g 186 (382)
T COG1103 186 G 186 (382)
T ss_pred C
Confidence 5
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.8e-08 Score=88.98 Aligned_cols=117 Identities=15% Similarity=0.026 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCCCC-CCEEEeCCHH-HHHHHHHHHhc--C-CCCeEEEcCCCChhHHHHHHHCCCEEEEecC---CCCC
Q 025730 132 RRLRAALAKDSGLES-DHILVGCGAD-ELIDLIMRCVL--D-PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR---KSDF 203 (249)
Q Consensus 132 ~~lr~~la~~~~~~~-~~I~vt~Ga~-~~l~~~~~~~~--~-pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~---~~~~ 203 (249)
.+|.+.+++++|++. +..++++|+| .++.+++.++- . +||.|+++.-+|......+...|++++.++. ++++
T Consensus 108 ~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~ 187 (444)
T TIGR03531 108 NKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDGDEL 187 (444)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeecCcCC
Confidence 567888888899863 4578888888 57777766543 1 5899999999999889999999999999993 4678
Q ss_pred CCCHHHHHHhhccC--CceEEEEcCCC-CccccCCChHHHHHHHhhhhC
Q 025730 204 SLNVELIADAVERE--KPKCIFLTSPN-NPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 204 ~id~e~l~~~i~~~--~~k~i~l~~Pn-NPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+|++++++++++. +..++++++|+ +++|.. .+.+.+.++|++||
T Consensus 188 ~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~-ddL~eIa~la~k~g 235 (444)
T TIGR03531 188 TTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSP-DDIEEIAKICANYD 235 (444)
T ss_pred CcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcch-hCHHHHHHHHHHcC
Confidence 99999999999731 56777777776 344455 67788999999986
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.9e-08 Score=88.50 Aligned_cols=149 Identities=13% Similarity=0.156 Sum_probs=100.8
Q ss_pred CCCCeeeccCCCCCCC---CCHHHHHHHHh-ccC---CCC-CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANENPYG---PPPEVREALGQ-LKF---PYI-YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~---~p~~v~~al~~-~~~---~~~-Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+-.... ..+.+.+++.+ +.. ..+ ++.....+|.+.++++++. +.++++++++++++.+++
T Consensus 39 ~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~SGs~A~e~al~ 116 (401)
T PRK00854 39 DGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGS--HKVLPMNSGAEAVETAIK 116 (401)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHH
Confidence 3456788766633222 25777777765 322 111 2333466799999998874 589999999999999998
Q ss_pred HhcC---------CC-CeEEEcCCCChhHHHHHHHCCC-------------EEEEecCCCCCCCCHHHHHHhhccCCceE
Q 025730 165 CVLD---------PG-DKIVDCPPTFTMYEFDAAVNGA-------------AVVKVPRKSDFSLNVELIADAVEREKPKC 221 (249)
Q Consensus 165 ~~~~---------pG-d~Vlv~~P~y~~~~~~~~~~G~-------------~v~~v~~~~~~~id~e~l~~~i~~~~~k~ 221 (249)
.+.. +| ++|++..-+|......+...+. .+..++ ..|++++++.+. +++++
T Consensus 117 ~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~le~~i~-~~~~a 190 (401)
T PRK00854 117 AVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVP-----FGDAEALEAAIT-PNTVA 190 (401)
T ss_pred HHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeC-----CCCHHHHHHHhC-CCeEE
Confidence 7742 24 6888888777643322222221 122222 147899999997 68999
Q ss_pred EEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 222 IFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 222 i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
|++++|+||+|.++++. +.+..+|++||
T Consensus 191 ii~e~~~~~~G~~~~~~~~l~~l~~l~~~~g 221 (401)
T PRK00854 191 FLVEPIQGEAGVIIPPAGYFTRVRELCTANN 221 (401)
T ss_pred EEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 99999999999998754 55788899886
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7e-08 Score=83.62 Aligned_cols=150 Identities=21% Similarity=0.219 Sum_probs=110.7
Q ss_pred eeeccCCCCCCCCCHHHHHHHHhcc-CCCCCC-CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcC-CCCeE
Q 025730 97 IVKIDANENPYGPPPEVREALGQLK-FPYIYP-DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLD-PGDKI 173 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~~~-~~~~Yp-~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~-pGd~V 173 (249)
.+||-+-. -.-|..++.++|.+.. ....|. |+...+|.+..|+.+| .+.-++..++|.+..+.++..|. +|.+|
T Consensus 23 ~vDLRSDT-vT~PTdeMr~am~eA~vgDdVyGeD~tt~rLE~~vA~l~G--KEAgLFv~SGTmgNllaIm~Hc~~rg~ei 99 (384)
T KOG1368|consen 23 SVDLRSDT-VTVPTDEMRRAMAEASVGDDVYGEDPTTNRLEQRVAELFG--KEAGLFVPSGTMGNLLAIMVHCHQRGSEI 99 (384)
T ss_pred cccccccc-ccCChHHHHHHHhhcccCcccccCCccHHHHHHHHHHHhC--ccceeeecccccccHHHHHHHhcCCCceE
Confidence 46665433 2335578888888733 235674 5678899999999999 55444444555566666666654 99999
Q ss_pred EEcCCCCh-hHHH--HHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-------CCceEEEEcCCCCccc-cCCChHH--H
Q 025730 174 VDCPPTFT-MYEF--DAAVNGAAVVKVPRKSDFSLNVELIADAVER-------EKPKCIFLTSPNNPDG-RFSWTSS--W 240 (249)
Q Consensus 174 lv~~P~y~-~~~~--~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-------~~~k~i~l~~PnNPTG-~~~~~~e--~ 240 (249)
++.+-.+. .|+. +....|+.+..+...+++.+|+++|++++.. +.+++|+|.|-+|-+| .+++.++ .
T Consensus 100 i~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~ 179 (384)
T KOG1368|consen 100 IVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDR 179 (384)
T ss_pred EeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHH
Confidence 99998885 3443 4556889999998778889999999999863 2479999999988787 8888774 4
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+..+|++||
T Consensus 180 v~~lak~~g 188 (384)
T KOG1368|consen 180 VKALAKRHG 188 (384)
T ss_pred HHHHHhccC
Confidence 788999875
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-07 Score=86.59 Aligned_cols=155 Identities=16% Similarity=0.167 Sum_probs=104.1
Q ss_pred CCCCeeeccCCCCCC---CCCHHHHHHHHh-ccCCCCC--CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANENPY---GPPPEVREALGQ-LKFPYIY--PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~---~~p~~v~~al~~-~~~~~~Y--p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.+...+|+..+.... -.++.+.+++.+ +.....| +..+..+|+++|++++.. .++|++++|++++++.+++..
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~lae~l~~~~~~-~~~v~~~~sGseA~e~Alk~a 124 (423)
T TIGR00713 46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVPS-VEMVRFVNSGTEATMSAVRLA 124 (423)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCc-ccEEEEeCCHHHHHHHHHHHH
Confidence 456788998775432 356888888875 4333334 555688999999998864 368999999999999988753
Q ss_pred c--CCCCeEEEcCCCChhHHHHHHH---CCCEEEEecCC----C-----CC---CCCHHHHHHhhcc--CCceEEEEc-C
Q 025730 167 L--DPGDKIVDCPPTFTMYEFDAAV---NGAAVVKVPRK----S-----DF---SLNVELIADAVER--EKPKCIFLT-S 226 (249)
Q Consensus 167 ~--~pGd~Vlv~~P~y~~~~~~~~~---~G~~v~~v~~~----~-----~~---~id~e~l~~~i~~--~~~k~i~l~-~ 226 (249)
. ...++|+...++|..+...+.. .|......+.. . .. ..|++++++.+++ .++++|++. .
T Consensus 125 r~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~ 204 (423)
T TIGR00713 125 RGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPV 204 (423)
T ss_pred HHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCC
Confidence 2 2458999999999876433222 11111111100 0 00 0278999998863 357888875 8
Q ss_pred CCCccccCCChH---HHHHHHhhhhC
Q 025730 227 PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 227 PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
|+| +|.+.++. +.+.++|++||
T Consensus 205 ~~~-~G~~~~~~~~l~~l~~l~~~~~ 229 (423)
T TIGR00713 205 AGN-MGVVPPKPEFLAGLRALTEEYG 229 (423)
T ss_pred CCC-CCCcCCCHHHHHHHHHHHHHhC
Confidence 899 79887753 55888999886
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=88.47 Aligned_cols=150 Identities=14% Similarity=0.067 Sum_probs=104.9
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCC--CCCCc----C------hHH-HHHHHHHHcCCCCCCEEEe---CCHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPY--IYPDP----E------SRR-LRAALAKDSGLESDHILVG---CGADE 157 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~--~Yp~~----g------~~~-lr~~la~~~~~~~~~I~vt---~Ga~~ 157 (249)
.+.|+|-..||.. ++.+++++.. +...+ .||.. | .++ .|+.++++++.+++++.++ .|+++
T Consensus 34 ~~~l~l~~sen~~--s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~ 111 (452)
T PTZ00094 34 IEGLELIASENFT--SRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSP 111 (452)
T ss_pred HcCeeEecccccC--CHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHH
Confidence 4568999999974 5788888876 32212 33321 1 222 5678899999988887666 78899
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCChhHHHHHHH----------CCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCC
Q 025730 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV----------NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSP 227 (249)
Q Consensus 158 ~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~----------~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~P 227 (249)
+...++.+++++||+|++....|......... .+.++..++.+.++.+|++++++.+++.++++|++.+
T Consensus 112 an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~~- 190 (452)
T PTZ00094 112 ANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAGA- 190 (452)
T ss_pred HHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEeC-
Confidence 99999999999999999987777643322210 1133445555556889999999999655778877643
Q ss_pred CCccccCCChHHHHHHHhhhhC
Q 025730 228 NNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 228 nNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.+|.. .+.+.+.++|+++|
T Consensus 191 -s~~g~~-~di~~I~~i~~~~g 210 (452)
T PTZ00094 191 -SAYPRD-IDYKRFREICDSVG 210 (452)
T ss_pred -CCCCCc-cCHHHHHHHHHHcC
Confidence 348987 46667778898875
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=98.74 E-value=8e-08 Score=86.93 Aligned_cols=130 Identities=16% Similarity=0.081 Sum_probs=88.8
Q ss_pred CCCCCCHHHHHHHHh-ccC----C-CCCC-C-------cChHHHHHHHHHHcCC-CCCCEEEeCC-HHHHHHHHHHHhcC
Q 025730 105 NPYGPPPEVREALGQ-LKF----P-YIYP-D-------PESRRLRAALAKDSGL-ESDHILVGCG-ADELIDLIMRCVLD 168 (249)
Q Consensus 105 ~~~~~p~~v~~al~~-~~~----~-~~Yp-~-------~g~~~lr~~la~~~~~-~~~~I~vt~G-a~~~l~~~~~~~~~ 168 (249)
-|...|+.|++++.. +.. + ..|. . .-..+.|+.++++++. ++++|++|.| +|++++.++..++.
T Consensus 6 Gp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~ 85 (355)
T cd00611 6 GPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLG 85 (355)
T ss_pred CCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC
Confidence 355678899999876 311 1 1111 1 1256889999999997 5678999988 99999999999987
Q ss_pred ---CCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCC-C-HHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 169 ---PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSL-N-VELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 169 ---pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~i-d-~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
+||.|++ .+....+...++..|.++..++.++++.. + ++..+..++ +++|+|.+++-.|.||..++
T Consensus 86 ~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~lV~~~h~~t~tG~~~~ 156 (355)
T cd00611 86 DKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLA-PDAAYVHYCSNETIHGVEFD 156 (355)
T ss_pred CCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCC-CCCCEEEEeCCcccccEEcc
Confidence 4555544 22222334477888999988886443222 3 233333444 78999999999999999853
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-07 Score=84.86 Aligned_cols=122 Identities=13% Similarity=0.204 Sum_probs=92.3
Q ss_pred CCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh-hHHHHHHHCCCEEEEec---
Q 025730 124 YIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT-MYEFDAAVNGAAVVKVP--- 198 (249)
Q Consensus 124 ~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~-~~~~~~~~~G~~v~~v~--- 198 (249)
..| .++...+|.+.+++++|. ++++.++.++.++.+++...++|||.| +..+|. .........|+..+.+.
T Consensus 72 d~Yagd~s~~~LE~~vAe~lG~--e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d~ 147 (460)
T PRK13237 72 EAYAGSRNFYHLEETVQEYYGF--KHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIIDE 147 (460)
T ss_pred hhhcCCCcHHHHHHHHHHHHCC--CeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCCcEEEeeeccc
Confidence 457 466789999999999995 479999999999999877778999975 444443 44444677888766553
Q ss_pred -------CCCCCCCCHHHHHHhhccC---CceEEEEcCCCCcc-ccCCCh--HHHHHHHhhhhC
Q 025730 199 -------RKSDFSLNVELIADAVERE---KPKCIFLTSPNNPD-GRFSWT--SSWIWGISSEHN 249 (249)
Q Consensus 199 -------~~~~~~id~e~l~~~i~~~---~~k~i~l~~PnNPT-G~~~~~--~e~i~~i~~~~~ 249 (249)
...++.+|++++++++++. ++++|.+.+++|-. |..++. .+.+.++|++||
T Consensus 148 a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~G 211 (460)
T PRK13237 148 AHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHG 211 (460)
T ss_pred ccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcC
Confidence 1246789999999999742 34567788899998 577554 467899999986
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-07 Score=83.09 Aligned_cols=118 Identities=21% Similarity=0.246 Sum_probs=97.3
Q ss_pred CCCC---CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh----hHHHHHHHCCCEEE
Q 025730 123 PYIY---PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT----MYEFDAAVNGAAVV 195 (249)
Q Consensus 123 ~~~Y---p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~----~~~~~~~~~G~~v~ 195 (249)
++-| .++....|.+.++.+-|= -.-+.+.+++.++..++..++++||.|+-..--|. .+....+..|.++.
T Consensus 53 G~iYsRi~NPT~~vlE~RiAaLEGG--~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~ 130 (426)
T COG2873 53 GNIYTRIMNPTTDVLEERIAALEGG--VAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVR 130 (426)
T ss_pred CceeeeccCchHHHHHHHHHHhhcc--hhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEE
Confidence 4555 457788999999998851 12355677789999999999999999998888775 34455577999999
Q ss_pred EecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 196 KVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 196 ~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|+. .|++.++++++ ++||+||+..-.||-+.+ .+-+.+..||++|+
T Consensus 131 fvd~-----~d~~~~~~aI~-~nTkavf~EtigNP~~~v-~Die~ia~iAh~~g 177 (426)
T COG2873 131 FVDP-----DDPENFEAAID-ENTKAVFAETIGNPGLDV-LDIEAIAEIAHRHG 177 (426)
T ss_pred EeCC-----CCHHHHHHHhC-cccceEEEEeccCCCccc-cCHHHHHHHHHHcC
Confidence 9974 36899999998 899999999999999999 58888999999985
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-07 Score=82.98 Aligned_cols=147 Identities=10% Similarity=0.040 Sum_probs=93.2
Q ss_pred CCCCeeeccCCCCC-CCCCHHHHHHHHh-cc-CC--CC------CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANENP-YGPPPEVREALGQ-LK-FP--YI------YPDPESRRLRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~~-~~~p~~v~~al~~-~~-~~--~~------Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
.+...+|+..+... +...+++.+++.+ +. .+ .. +......+|++.|+++++. +.++.++| +++...
T Consensus 44 ~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~sG-~~a~~~ 120 (402)
T PRK07505 44 DGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA--SVLTFTSC-SAAHLG 120 (402)
T ss_pred CCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC--CEEEECCh-HHHHHH
Confidence 34567898765322 1456888888765 32 11 11 1122357899999999986 45555555 556666
Q ss_pred HHHHhc----CCCC-eEEEcCCCCh-hHH--HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 162 IMRCVL----DPGD-KIVDCPPTFT-MYE--FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 162 ~~~~~~----~pGd-~Vlv~~P~y~-~~~--~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
++..+. .+|+ .|++.+..|. .+. ......+.+++.+|. .|+++++++++ .++++++|++|+||||.
T Consensus 121 ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-----~d~~~l~~~~~-~~~~~~vl~~p~~~~G~ 194 (402)
T PRK07505 121 ILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-----NDLDALEDICK-TNKTVAYVADGVYSMGG 194 (402)
T ss_pred HHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-----CCHHHHHHHHh-cCCCEEEEEecccccCC
Confidence 654322 2232 3666665553 221 111224567777765 37899999887 56789999999999999
Q ss_pred CCChHHHHHHHhhhhC
Q 025730 234 FSWTSSWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~i~~i~~~~~ 249 (249)
+++ .+.+.++|+++|
T Consensus 195 ~~~-~~~i~~l~~~~~ 209 (402)
T PRK07505 195 IAP-VKELLRLQEKYG 209 (402)
T ss_pred cCC-HHHHHHHHHHcC
Confidence 965 566778898875
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=80.10 Aligned_cols=111 Identities=13% Similarity=0.047 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHH
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELI 210 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l 210 (249)
..++++.+|++++.+ +.+++++|.. ++..+...+.++||.|++..-.|......+.......+.++ ..|++++
T Consensus 58 ~~~~e~~la~~~~~~-~~l~~~sG~~-a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-----~~d~~~l 130 (370)
T PRK05937 58 LDDLEHKIAHFHGAP-EAFIVPSGYM-ANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFR-----HNDLDHL 130 (370)
T ss_pred HHHHHHHHHHHhCCC-eEEEECChHH-HHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEec-----CCCHHHH
Confidence 578999999999974 3477777764 44455555567788888777777655555554433333332 3588999
Q ss_pred HHhhcc-----CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 211 ADAVER-----EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 211 ~~~i~~-----~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++.++. +++++|++++++|++|.+. +.+.+.++|+++|
T Consensus 131 ~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~-pl~eI~~l~~~~~ 173 (370)
T PRK05937 131 ESLLESCRQRSFGRIFIFVCSVYSFKGTLA-PLEQIIALSKKYH 173 (370)
T ss_pred HHHHHhhhccCCCcEEEEEecCCCCCCCcc-CHHHHHHHHHHcC
Confidence 998863 2356777899999999995 5667777888875
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-08 Score=89.91 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=91.4
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CC---
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SD--- 202 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~--- 202 (249)
|..-..+..+.+|+.||.+ ...+++||++.++..+++++++|||+|+++..+|......+.+.|+++++++.. +.
T Consensus 64 p~G~I~eAe~~aA~~fGAd-~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~gi 142 (417)
T PF01276_consen 64 PEGIIKEAEELAARAFGAD-KTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEYGI 142 (417)
T ss_dssp TBTHHHHHHHHHHHHHTES-EEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TTS-
T ss_pred CccHHHHHHHHHHHhcCCC-eEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccccCC
Confidence 4334788999999999964 357789999999999999999999999999999988777888899999999832 22
Q ss_pred -CCCCH-----HHHHHhhcc-CCceE---EEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 -FSLNV-----ELIADAVER-EKPKC---IFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 -~~id~-----e~l~~~i~~-~~~k~---i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
..+++ +.+++++++ +..|. |+|++|+. .|.++ +.+.+.++|+++|
T Consensus 143 ~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~-di~~I~~~~h~~~ 197 (417)
T PF01276_consen 143 IGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCY-DIKEIAEICHKHG 197 (417)
T ss_dssp BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE--HHHHHHHHCCTE
T ss_pred ccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEE-CHHHHHHHhcccC
Confidence 23466 999999874 33444 99999986 79995 6666667777653
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.4e-07 Score=83.55 Aligned_cols=116 Identities=11% Similarity=-0.063 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCCCCC--CEEEeCCHHHHHHHHHHHhc--CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHH
Q 025730 133 RLRAALAKDSGLESD--HILVGCGADELIDLIMRCVL--DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208 (249)
Q Consensus 133 ~lr~~la~~~~~~~~--~I~vt~Ga~~~l~~~~~~~~--~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e 208 (249)
++.+.+++++|++++ .=++|+|++++...++.+.- .+...+++++-+|......+...|.+++.||.++++.+|++
T Consensus 137 ~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~g~mD~~ 216 (470)
T PLN02263 137 GVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTLVSGEIDCA 216 (470)
T ss_pred HHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccCCCCcCcHH
Confidence 455556666788653 46789999999988776542 23457889999999999999999999999999888999999
Q ss_pred HHHHhhccCC--ceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 209 LIADAVEREK--PKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 209 ~l~~~i~~~~--~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|++++.+.. +-+|+.+-.+.++|.+ ++.+.+..+|+++|
T Consensus 217 aL~~aI~~d~~~P~iVvataGTT~~GAi-Dpi~eIa~i~~~~g 258 (470)
T PLN02263 217 DFKAKLLANKDKPAIINVNIGTTVKGAV-DDLDLVIKTLEECG 258 (470)
T ss_pred HHHHHHHhCCCCcEEEEEEecCCCCcCC-CCHHHHHHHHHHcC
Confidence 9999997432 4455566788999999 89999999999875
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.6e-07 Score=83.80 Aligned_cols=148 Identities=20% Similarity=0.196 Sum_probs=100.2
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHhc--c-CCCCCC-------CcChHHHHH----HHHHHcCCCCCCE-EEeCCHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQL--K-FPYIYP-------DPESRRLRA----ALAKDSGLESDHI-LVGCGADELI 159 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~~--~-~~~~Yp-------~~g~~~lr~----~la~~~~~~~~~I-~vt~Ga~~~l 159 (249)
.+.++|-..+|.. +|.+++++... . ++.+|+ ++...+|.+ .+++++|.+ .. +.+++++.++
T Consensus 28 ~~~~~l~~sen~~--~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~--~alv~~~SG~~A~ 103 (416)
T PRK13034 28 QDHLELIASENFT--SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCD--YANVQPHSGSQAN 103 (416)
T ss_pred hcCeeecccccCC--CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCC--ceEEecCCcHHHH
Confidence 4568888888875 68888888752 1 111111 123567777 999999954 45 4467889999
Q ss_pred HHHHHHhcCCCCeEEEcCCCChh-HHHHHHH--CCCEE--EEecC-CCCCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 160 DLIMRCVLDPGDKIVDCPPTFTM-YEFDAAV--NGAAV--VKVPR-KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vlv~~P~y~~-~~~~~~~--~G~~v--~~v~~-~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
..++.++++|||+|++....|.. +..-++. .+... +.++. ...+.+|++++++.++..++|+|+++++. +|.
T Consensus 104 ~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~g~ 181 (416)
T PRK13034 104 GAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--YPR 181 (416)
T ss_pred HHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--ccc
Confidence 99999999999999999998864 2211111 12211 23332 23466899999998864578999877665 455
Q ss_pred CCChHHHHHHHhhhhC
Q 025730 234 FSWTSSWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~i~~i~~~~~ 249 (249)
. .+.+.+.++|++||
T Consensus 182 ~-~dl~~l~~la~~~g 196 (416)
T PRK13034 182 E-LDFARFREIADEVG 196 (416)
T ss_pred c-cCHHHHHHHHHHcC
Confidence 5 46677888899875
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-07 Score=87.23 Aligned_cols=120 Identities=14% Similarity=0.058 Sum_probs=96.4
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CC---
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SD--- 202 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~--- 202 (249)
|+.-..+..+.+|+.||.+ .-.+++||+|.++..++++++++||+|++...+|-.....+.+.|++++++... ..
T Consensus 203 p~G~I~eAq~~aA~~fgA~-~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi 281 (755)
T PRK15029 203 HTGAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGI 281 (755)
T ss_pred CCcHHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCC
Confidence 4444788999999999964 457788999999999999999999999999999988778888999999999722 22
Q ss_pred -CCCC-----HHHHHHhhcc-CCce--------EEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 -FSLN-----VELIADAVER-EKPK--------CIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 -~~id-----~e~l~~~i~~-~~~k--------~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
..++ ++.+++++++ +.+| +++|++|+. .|.++ +.+.+.++|++++
T Consensus 282 ~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~-di~~I~~~~h~~~ 341 (755)
T PRK15029 282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCY-NAKEAQDLLEKTS 341 (755)
T ss_pred ccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceee-CHHHHHHHHHhcC
Confidence 2344 8999998853 2344 899999986 79995 5666677777764
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.6e-07 Score=88.16 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHH---HHHHhc-----CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCC
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDL---IMRCVL-----DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD 202 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~---~~~~~~-----~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~ 202 (249)
..++.+.+++..|.+.-.+..+.| .++-.. +++... ...++|+++.-.|......++..|.+++.|+.+++
T Consensus 532 i~elq~~l~eltGmd~~Sl~p~aG-A~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~ 610 (939)
T TIGR00461 532 IAQLEKWLCSITGFDAISLQPNSG-AQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQD 610 (939)
T ss_pred HHHHHHHHHHHHCCCCcccCCchH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCC
Confidence 357888888888987433333333 433332 233211 12367999999997666678889999999998888
Q ss_pred CCCCHHHHHHhhcc--CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 FSLNVELIADAVER--EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 ~~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.+|+++|++++++ .++++|++++|+| +|.+-++.+.+.++|+++|
T Consensus 611 G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G 658 (939)
T TIGR00461 611 GNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFG 658 (939)
T ss_pred CCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcC
Confidence 99999999999974 4789999999999 8998655788889998874
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.7e-07 Score=81.25 Aligned_cols=130 Identities=11% Similarity=0.011 Sum_probs=90.3
Q ss_pred CCCCCHH-HHHHHHh-cc-CCCCCCC--cChHHHHHHHHHHcCCC-CCCEEEeC-CHHHHHHHHHHHhcCC-CCeEEEcC
Q 025730 106 PYGPPPE-VREALGQ-LK-FPYIYPD--PESRRLRAALAKDSGLE-SDHILVGC-GADELIDLIMRCVLDP-GDKIVDCP 177 (249)
Q Consensus 106 ~~~~p~~-v~~al~~-~~-~~~~Yp~--~g~~~lr~~la~~~~~~-~~~I~vt~-Ga~~~l~~~~~~~~~p-Gd~Vlv~~ 177 (249)
|..+++. +++++.. .. ..++-+. .-..+.|+.++++++.+ +++|+++. ++|++++.++..++++ ++.|++ +
T Consensus 20 p~~~~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~ 98 (378)
T PRK03080 20 PCKKRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-W 98 (378)
T ss_pred CcCCChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-e
Confidence 4445566 8898875 22 1133232 23678999999999984 45788875 8999999999999875 445554 4
Q ss_pred CCCh-hHHH-HHHHCCC-EEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHH
Q 025730 178 PTFT-MYEF-DAAVNGA-AVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIW 242 (249)
Q Consensus 178 P~y~-~~~~-~~~~~G~-~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~ 242 (249)
-.|+ .+.. ..+..|. ++..++.+.+..+|+++++ .++.|.+++.+|.||..++.+++.+
T Consensus 99 g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~------~~~~V~~~h~~t~tG~~~pi~~I~~ 160 (378)
T PRK03080 99 ESFGSKWATDVVKQLKLEDPRVLEADYGSLPDLSAVD------FDRDVVFTWNGTTTGVRVPVARWIG 160 (378)
T ss_pred CHHHHHHHHHHHhhcCCCCceEeccCCCCCCCHhhcC------CCCCEEEEecCCccceeccchhhcc
Confidence 4565 3443 2356788 8888887666678877642 2567899999999999976555433
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-06 Score=78.82 Aligned_cols=155 Identities=11% Similarity=0.072 Sum_probs=99.5
Q ss_pred CCCCeeeccCCCCCCC---CCHHHHHHHHh-ccC---CCC-CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANENPYG---PPPEVREALGQ-LKF---PYI-YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~---~p~~v~~al~~-~~~---~~~-Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+.-... .+|.+.+++.+ +.. ..+ +......++++.++++++. +.++++++++++.+.+++
T Consensus 29 dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~SGs~A~e~al~ 106 (400)
T PTZ00125 29 EGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLFGY--DKVLPMNSGAEAGETALK 106 (400)
T ss_pred CCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCCCC--CEEEEeCCcHHHHHHHHH
Confidence 3456788877643332 46788888765 321 111 1122356688888887764 578899999999999998
Q ss_pred Hhc----------CCCCeEEEcCCCChhHHHHH-HHCCCEEE---EecCCCC----CCCCHHHHHHhhccCCceEEEEcC
Q 025730 165 CVL----------DPGDKIVDCPPTFTMYEFDA-AVNGAAVV---KVPRKSD----FSLNVELIADAVEREKPKCIFLTS 226 (249)
Q Consensus 165 ~~~----------~pGd~Vlv~~P~y~~~~~~~-~~~G~~v~---~v~~~~~----~~id~e~l~~~i~~~~~k~i~l~~ 226 (249)
... ..+++|++.+-.|....... ...+.... ..+...+ ...|++++++.++..++++|++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep 186 (400)
T PTZ00125 107 FARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEP 186 (400)
T ss_pred HHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcC
Confidence 653 13478888888876433322 22221111 0111000 113899999999645799999988
Q ss_pred CCCccccCCChH---HHHHHHhhhhC
Q 025730 227 PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 227 PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++||||.++++. +.+.++|++||
T Consensus 187 ~~~~~G~~~~~~~~l~~l~~l~~~~~ 212 (400)
T PTZ00125 187 IQGEAGVIVPDDGYLKQVYELCKKYN 212 (400)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 899999998753 55788899886
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-06 Score=77.71 Aligned_cols=149 Identities=14% Similarity=0.194 Sum_probs=97.9
Q ss_pred CCCCeeeccCCCC--CCC-CCHHHHHHHHh-ccC---CCC-CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANEN--PYG-PPPEVREALGQ-LKF---PYI-YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~~--~~~-~p~~v~~al~~-~~~---~~~-Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+-- .++ ..|.+.+++.+ +.. ..+ +..+...+|.+.|+++.+ .+.++++++++++++.++.
T Consensus 38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~SGseA~e~Alk 115 (396)
T PRK04073 38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTG--KDMVLPMNTGAEAVETAIK 115 (396)
T ss_pred CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcCC--CCeEEEcCChHHHHHHHHH
Confidence 4566788866532 232 45777877765 332 111 223335678888888776 4689999999999999888
Q ss_pred HhcC---------CC-CeEEEcCCCChhHH-HHHHHCCCE------------EEEecCCCCCCCCHHHHHHhhccCCceE
Q 025730 165 CVLD---------PG-DKIVDCPPTFTMYE-FDAAVNGAA------------VVKVPRKSDFSLNVELIADAVEREKPKC 221 (249)
Q Consensus 165 ~~~~---------pG-d~Vlv~~P~y~~~~-~~~~~~G~~------------v~~v~~~~~~~id~e~l~~~i~~~~~k~ 221 (249)
.... +| ++|+..+-+|.... ......+.. +..++. .|++++++.++ .++++
T Consensus 116 ~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~-~~~~~ 189 (396)
T PRK04073 116 AARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-----GDLEALKAAIT-PNTAA 189 (396)
T ss_pred HHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-----CCHHHHHHhcc-cCeEE
Confidence 6521 34 67888877775332 222222211 112221 27899999987 67899
Q ss_pred EEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 222 IFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 222 i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
|+++.++||||.++++. +.+.++|++||
T Consensus 190 viiep~~~~~G~~~~~~~~l~~l~~l~~~~g 220 (396)
T PRK04073 190 FLVEPIQGEAGINIPPEGFLKAARELCKEEN 220 (396)
T ss_pred EEEcCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 98888899999998764 56788898875
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=84.31 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=93.9
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHH-HHHCCCEEEEecCC-CCC-
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD-AAVNGAAVVKVPRK-SDF- 203 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~-~~~~G~~v~~v~~~-~~~- 203 (249)
|+.-..+..+.+|+.||.+ .-.+++||++.++..++++++.+||+|++...+|-..... ..+.|++++++... +.+
T Consensus 172 ~eG~i~eAq~~AA~~fgAd-~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~G 250 (720)
T PRK13578 172 HEGAAKDAQKHAAKVFNAD-KTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFG 250 (720)
T ss_pred CChHHHHHHHHHHHHhCCC-ceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccccC
Confidence 4334788999999999965 3567889999999999999999999999999999876663 67899999999732 222
Q ss_pred ---CCCHHH-----HHHhhccC--------C-ceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 204 ---SLNVEL-----IADAVERE--------K-PKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 204 ---~id~e~-----l~~~i~~~--------~-~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+++.+. |++++++. + .|+++|++|+. .|.+++..+++..++++++
T Consensus 251 i~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~ 312 (720)
T PRK13578 251 FIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD 312 (720)
T ss_pred CcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC
Confidence 346544 88888643 1 58999999986 8999766666666676643
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-06 Score=74.16 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=108.2
Q ss_pred HHHHhCCC-CCCeeeccCCCCC--CC---CCHHHHHHHHhc---cCCCCC-CCcChHHHHHHHHHHc-C-----CCCCCE
Q 025730 86 LSIQLGRK-PEDIVKIDANENP--YG---PPPEVREALGQL---KFPYIY-PDPESRRLRAALAKDS-G-----LESDHI 149 (249)
Q Consensus 86 ~~~~~g~~-~~~~I~L~~~~~~--~~---~p~~v~~al~~~---~~~~~Y-p~~g~~~lr~~la~~~-~-----~~~~~I 149 (249)
+...+.++ .+..|+|++|... .+ .-+.|.+|-+.+ ...-.| |-.|..++.+..+++. | +..+.|
T Consensus 42 VTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri 121 (427)
T KOG1411|consen 42 VTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRI 121 (427)
T ss_pred HHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcCCchhhhccce
Confidence 34444433 3456888888432 11 235666665542 222467 8889999999999985 4 233344
Q ss_pred E--EeCCHHHHHHHHHHHh--cCCCCeEEEcCCCChhHHHHHHHCCCEEEEec--CCCCCCCCHHHHHHhhccCCceEEE
Q 025730 150 L--VGCGADELIDLIMRCV--LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCIF 223 (249)
Q Consensus 150 ~--vt~Ga~~~l~~~~~~~--~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~--~~~~~~id~e~l~~~i~~~~~k~i~ 223 (249)
+ -|-++|.+|.+...-+ .-++..|.+++|+|.....++..+|..+..+. .....++|++.+.+-+.+.....++
T Consensus 122 ~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~i 201 (427)
T KOG1411|consen 122 VTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSII 201 (427)
T ss_pred eEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEE
Confidence 3 2445566666554432 45789999999999999999999999987776 3456789999988888754455666
Q ss_pred EcC--CCCccccCCChHHH--HHHHhhh
Q 025730 224 LTS--PNNPDGRFSWTSSW--IWGISSE 247 (249)
Q Consensus 224 l~~--PnNPTG~~~~~~e~--i~~i~~~ 247 (249)
|++ .|||||+--+.++| +..+.++
T Consensus 202 lLhaCaHNPTGvDPt~eqw~ki~~~~~~ 229 (427)
T KOG1411|consen 202 LLHACAHNPTGVDPTKEQWEKISDLIKE 229 (427)
T ss_pred EeehhhcCCCCCCccHHHHHHHHHHhhh
Confidence 776 49999999566655 4444443
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-05 Score=73.61 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=101.7
Q ss_pred CCCCeeeccCC--CCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCC-CEEEeCCHHHHHHHHHHHh--
Q 025730 93 KPEDIVKIDAN--ENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCV-- 166 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~~~~~~-- 166 (249)
.+...||+..+ ...++..|.+.+++.+ +.....++.....++++.+++.+.-.++ .++++++++++...+++..
T Consensus 27 dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~ 106 (375)
T PRK04260 27 DGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARK 106 (375)
T ss_pred CCCEEEECCCCcccccCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHH
Confidence 34567899776 3446667889988876 4332344444456788899987643344 3578999999999887764
Q ss_pred cCCCCeEEEcCCCChhHH-HHHHHCCCEEEE------ecCCCC-CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 167 LDPGDKIVDCPPTFTMYE-FDAAVNGAAVVK------VPRKSD-FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 167 ~~pGd~Vlv~~P~y~~~~-~~~~~~G~~v~~------v~~~~~-~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
...+++|++.+..|.... ......|.+... ++.... ...|++.+++.++ .++.+|++..++|++|.+..+.
T Consensus 107 ~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~-~~~a~vi~e~v~~~~G~~~~~~ 185 (375)
T PRK04260 107 ATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVN-KNTAAVMLELVQGESGVLPADK 185 (375)
T ss_pred hcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcC-CCeEEEEECCeECCCCCcCCCH
Confidence 235678999888887432 222222221110 000000 0238999999886 5788999999999999886543
Q ss_pred ---HHHHHHhhhhC
Q 025730 239 ---SWIWGISSEHN 249 (249)
Q Consensus 239 ---e~i~~i~~~~~ 249 (249)
+.+..+|+++|
T Consensus 186 ~~l~~~~~l~~~~~ 199 (375)
T PRK04260 186 DFVKALADYCQETG 199 (375)
T ss_pred HHHHHHHHHHHHcC
Confidence 55778888875
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-05 Score=73.05 Aligned_cols=156 Identities=12% Similarity=0.150 Sum_probs=97.5
Q ss_pred CCCCeeeccCCCC--CC-CCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCC--CCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANEN--PY-GPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGL--ESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~~--~~-~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~--~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.+...+|+..|.. .+ -.++.+.+++.+ ++...........++++.+++++.- ..+.+++++++++++..+++..
T Consensus 27 ~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a 106 (377)
T PRK02936 27 NGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLA 106 (377)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHH
Confidence 3556889988752 22 356788888765 4322112222345677777777641 2357999999999999999853
Q ss_pred -cCCC-CeEEEcCCCChhHHHH-HHHCCCEEE---EecCCCC--C--CCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 167 -LDPG-DKIVDCPPTFTMYEFD-AAVNGAAVV---KVPRKSD--F--SLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 167 -~~pG-d~Vlv~~P~y~~~~~~-~~~~G~~v~---~v~~~~~--~--~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
..+| ++|++.++.|...... ....|.... ..+...+ + .-|++.+++.++ +++++|++..+++++|....
T Consensus 107 ~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~ii~e~i~~~~G~~~~ 185 (377)
T PRK02936 107 RKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMN-EEVAAVMLEVVQGEGGVIPA 185 (377)
T ss_pred HHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhcc-CCeEEEEEecccCCCCCccC
Confidence 2244 6799999988733221 122222111 1111111 0 117899999997 67899999888999987743
Q ss_pred h-H--HHHHHHhhhhC
Q 025730 237 T-S--SWIWGISSEHN 249 (249)
Q Consensus 237 ~-~--e~i~~i~~~~~ 249 (249)
+ + +.+..+|++||
T Consensus 186 ~~~~l~~l~~l~~~~~ 201 (377)
T PRK02936 186 DPAFLQEVQTLCKKFG 201 (377)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3 2 55788999886
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.2e-05 Score=78.20 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=100.4
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHhc-cC--CCCC-CC---cC----hHHHHHHHHHHcCCCCCCEEEeC-CHHHHHHH-
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQL-KF--PYIY-PD---PE----SRRLRAALAKDSGLESDHILVGC-GADELIDL- 161 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~~-~~--~~~Y-p~---~g----~~~lr~~la~~~~~~~~~I~vt~-Ga~~~l~~- 161 (249)
..+|.|+.-.+.+. +.+...+... .. .+-| |. .| ..++.+.+++.+|.+ ++.+.. |++++...
T Consensus 499 ~~~i~lGsct~~~~--p~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d--~~sl~~~~ga~ge~ag 574 (954)
T PRK05367 499 RSMIPLGSCTMKLN--AAAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYD--AVSLQPNAGAQGEYAG 574 (954)
T ss_pred cceeeCCcCCCcCC--HHHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCC--CEEECccHHHHHHHHH
Confidence 34678888555543 3444443332 22 2334 31 12 356777888888965 455544 55444433
Q ss_pred --HHHHh-cCCCC----eEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC--CceEEEEcCCCCccc
Q 025730 162 --IMRCV-LDPGD----KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE--KPKCIFLTSPNNPDG 232 (249)
Q Consensus 162 --~~~~~-~~pGd----~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~--~~k~i~l~~PnNPTG 232 (249)
+++.+ .++|| +|++++..|......+...|.+++.++.+.++.+|+++|++++++. ++.+|++++|++- |
T Consensus 575 L~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~-G 653 (954)
T PRK05367 575 LLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTH-G 653 (954)
T ss_pred HHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCC-e
Confidence 23322 35665 5999999997777778889999999998778899999999999742 5778888999875 5
Q ss_pred cCCChHHHHHHHhhhhC
Q 025730 233 RFSWTSSWIWGISSEHN 249 (249)
Q Consensus 233 ~~~~~~e~i~~i~~~~~ 249 (249)
.+..+.+.+..+|+++|
T Consensus 654 ~~e~~I~eI~~i~h~~G 670 (954)
T PRK05367 654 VFEETIREICEIVHEHG 670 (954)
T ss_pred eecCCHHHHHHHHHHcC
Confidence 54356788888888875
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.1e-06 Score=80.02 Aligned_cols=119 Identities=10% Similarity=0.088 Sum_probs=91.8
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCC--
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDF-- 203 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~-- 203 (249)
|+.-..+..+.+|+.||.+ .-.+++||++.++..++++++.+||+|++...+|-.......+.|++++++... +.+
T Consensus 193 ~~G~i~eAe~~AA~~fgAd-~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi 271 (714)
T PRK15400 193 HSGPHKEAEEYIARVFNAD-RSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGI 271 (714)
T ss_pred CChHHHHHHHHHHHHhCCC-cEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCC
Confidence 3334678999999999965 356788999999999999999999999999999987777788899999999732 222
Q ss_pred --CCC-----HHHHHHhhccC-Cce---EEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 204 --SLN-----VELIADAVERE-KPK---CIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 204 --~id-----~e~l~~~i~~~-~~k---~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
+++ .+.+++++++. +.+ .++|++|+. .|.+++. +.+.++++.+
T Consensus 272 ~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd~-~~I~~~~~~~ 325 (714)
T PRK15400 272 LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLYNT-DFIKKTLDVK 325 (714)
T ss_pred ccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEecCH-HHHHHHhCCC
Confidence 345 89999998642 334 788999964 8999654 4555555543
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.5e-06 Score=76.88 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=94.6
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CC---
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KS--- 201 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~--- 201 (249)
|..-..+..+..|+.+|.+. -.+++||++.++..++++++.+||+|++..++|........+.|+.++++.. +.
T Consensus 68 p~G~i~eAqe~aA~~fgAd~-tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~g 146 (557)
T COG1982 68 PEGPIKEAQELAARVFGADH-TYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYG 146 (557)
T ss_pred CCccHHHHHHHHHHHhCCCc-eEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCcccc
Confidence 44447899999999999643 4678899999999999999999999999999998777777789999999873 22
Q ss_pred -CCCCCHHHHHHhhcc-CCc-eEEEEcCCCCccccCCChHHHHHHHh
Q 025730 202 -DFSLNVELIADAVER-EKP-KCIFLTSPNNPDGRFSWTSSWIWGIS 245 (249)
Q Consensus 202 -~~~id~e~l~~~i~~-~~~-k~i~l~~PnNPTG~~~~~~e~i~~i~ 245 (249)
-++++.+.+.+++.+ ... |+++|+||+. .|.+++.++++..+.
T Consensus 147 i~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n~~~i~~~~~ 192 (557)
T COG1982 147 IIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYNLRKIVELLH 192 (557)
T ss_pred ccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeecHHHHHHHHh
Confidence 257899999998753 345 8899888876 799987776665543
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-05 Score=78.69 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=89.5
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CC---
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SD--- 202 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~--- 202 (249)
|..-..+..+.+|+.||.+ .-.+++||++.++..++++++.+||+|++...+|-.......+.|++++++... +.
T Consensus 193 ~~G~i~eAe~~aA~~fgAd-~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi 271 (713)
T PRK15399 193 HTGPHLEAEEYIARTFGAE-QSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGI 271 (713)
T ss_pred CChHHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccccccCC
Confidence 3334678899999999965 356788999999999999999999999999999987777788899999999732 22
Q ss_pred -CCCCH-----HHHHHhhccC----CceEEEEcCCCCccccCCChHHHHH
Q 025730 203 -FSLNV-----ELIADAVERE----KPKCIFLTSPNNPDGRFSWTSSWIW 242 (249)
Q Consensus 203 -~~id~-----e~l~~~i~~~----~~k~i~l~~PnNPTG~~~~~~e~i~ 242 (249)
++++. +.+++++++. ++++++|++|+. .|.+++..++..
T Consensus 272 ~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd~~~I~~ 320 (713)
T PRK15399 272 LGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY-DGLLYNTDWIKQ 320 (713)
T ss_pred cCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC-CceeeCHHHHHH
Confidence 23455 8888888642 236899999964 899976555443
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-05 Score=67.93 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=103.6
Q ss_pred HHHHHhCCC-CCCeeeccCCCCCCC-----CCHHHHHHHHhc----cCCCCC-CCcChHHHHHHHHHHc-C-----CCCC
Q 025730 85 VLSIQLGRK-PEDIVKIDANENPYG-----PPPEVREALGQL----KFPYIY-PDPESRRLRAALAKDS-G-----LESD 147 (249)
Q Consensus 85 ~~~~~~g~~-~~~~I~L~~~~~~~~-----~p~~v~~al~~~----~~~~~Y-p~~g~~~lr~~la~~~-~-----~~~~ 147 (249)
.+...++.. .+..++|+.+.-... .-|.|.++-..+ ...+.| |-.|.+.++++.++.+ | +..+
T Consensus 19 ~~~~~y~~d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~lg~~s~a~kE~ 98 (410)
T KOG1412|consen 19 KLNASYGEDLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATELLLGADSPAIKED 98 (410)
T ss_pred hhHHHhcccCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHHHhcCCCchhhhhc
Confidence 344445543 334577777632111 113444433322 223667 7789999999988875 4 2233
Q ss_pred CE--EEeCCHHHHHHHHHHHh--cCCCCeEEEcCCCChhHHHHHHHCCC-EEEEec--CCCCCCCCHHHHHHhhccCCce
Q 025730 148 HI--LVGCGADELIDLIMRCV--LDPGDKIVDCPPTFTMYEFDAAVNGA-AVVKVP--RKSDFSLNVELIADAVEREKPK 220 (249)
Q Consensus 148 ~I--~vt~Ga~~~l~~~~~~~--~~pGd~Vlv~~P~y~~~~~~~~~~G~-~v~~v~--~~~~~~id~e~l~~~i~~~~~k 220 (249)
.+ +-+-+++.++.+...-+ .-+...|.+.+|+|.....+++..|. ++..++ ..+.-.+|++.+...++....+
T Consensus 99 Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~ 178 (410)
T KOG1412|consen 99 RVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEG 178 (410)
T ss_pred cccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCC
Confidence 32 23455566676665533 22457899999999999999999994 444455 3455679999999999865566
Q ss_pred EEEEcC-C-CCccccCCChHHH--HHHHhhh
Q 025730 221 CIFLTS-P-NNPDGRFSWTSSW--IWGISSE 247 (249)
Q Consensus 221 ~i~l~~-P-nNPTG~~~~~~e~--i~~i~~~ 247 (249)
.|++++ . |||||.--+.++| +..+.++
T Consensus 179 si~iLhaCAhNPTGmDPT~EQW~qia~vik~ 209 (410)
T KOG1412|consen 179 SIIILHACAHNPTGMDPTREQWKQIADVIKS 209 (410)
T ss_pred cEEeeeccccCCCCCCCCHHHHHHHHHHHHh
Confidence 666664 3 9999999888877 4444443
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-05 Score=73.57 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=98.4
Q ss_pred CCeeeccCCCCCCCCCHHHHH-HHHhccCCCCC-CC---cChHHHHHHHHHHc----CCCCCCEEEeCCHHH---HHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVRE-ALGQLKFPYIY-PD---PESRRLRAALAKDS----GLESDHILVGCGADE---LIDLI 162 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~-al~~~~~~~~Y-p~---~g~~~lr~~la~~~----~~~~~~I~vt~Ga~~---~l~~~ 162 (249)
..+|+|++-..-+.+--+.+- .+......+-| |. .|+.++...|.+|+ |.+.=.+-.-.|+.. +|.++
T Consensus 66 ~~m~PLGSCTMK~Np~~e~~~~~~p~f~~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~I 145 (496)
T COG1003 66 RGMIPLGSCTMKLNPKAEMKPATWPEFANIHPFQPEEQVQGYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAI 145 (496)
T ss_pred cCccCCcccccccCchhhcccccccchhhcCCCCChHHHHHHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHH
Confidence 356788877766643221110 11112223445 43 25555555555554 544322333444432 33332
Q ss_pred HHHhcCCC----CeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 163 MRCVLDPG----DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 163 ~~~~~~pG----d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
=...-..| +.+|+++-.+..-...+.+.|.+|+.|+.++++.+|+++|++++. +++.+++|+|||. .|..=...
T Consensus 146 r~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~-~~~AalMiTnPsT-~GvFE~~I 223 (496)
T COG1003 146 RAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAE-DNLAALMITNPST-LGVFEEDI 223 (496)
T ss_pred HHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhc-cceeEEEeccCcc-cccchhhH
Confidence 22223333 789999999998888899999999999999999999999999998 7899999999985 57663334
Q ss_pred HHHHHHhhhhC
Q 025730 239 SWIWGISSEHN 249 (249)
Q Consensus 239 e~i~~i~~~~~ 249 (249)
..+.+|.+++|
T Consensus 224 ~ei~~ivH~~G 234 (496)
T COG1003 224 REICEIVHEAG 234 (496)
T ss_pred HHHHHHHHHcC
Confidence 66777777764
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.9e-06 Score=74.74 Aligned_cols=102 Identities=12% Similarity=-0.035 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHcCCC-CCCEEEeCC-HHHHHHHHHHHhcCCCCeEEEcCCCCh--hHHHHHHHCCCEEEEecCC----CC
Q 025730 131 SRRLRAALAKDSGLE-SDHILVGCG-ADELIDLIMRCVLDPGDKIVDCPPTFT--MYEFDAAVNGAAVVKVPRK----SD 202 (249)
Q Consensus 131 ~~~lr~~la~~~~~~-~~~I~vt~G-a~~~l~~~~~~~~~pGd~Vlv~~P~y~--~~~~~~~~~G~~v~~v~~~----~~ 202 (249)
..++++.++++++.+ ..+|+++.| +|.+++.++..++.+||++++..-+.. .+...++..|. +..+..+ ..
T Consensus 39 ~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~ 117 (349)
T TIGR01364 39 ANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYT 117 (349)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCC
Confidence 456788888889974 346888877 999999999999999999887766653 56778888998 7666643 22
Q ss_pred CCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 203 ~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
..+|+++++. + .++++|.+++-.|.||...+
T Consensus 118 ~~~~~~~~~~--~-~~~~~v~~th~ETstGv~~~ 148 (349)
T TIGR01364 118 KIPDPSTWEI--S-EDAAYVHYCANETIHGVEFR 148 (349)
T ss_pred CCCCHHhcCC--C-CCCCEEEEcCCCCcccEecc
Confidence 3467776652 3 68999999999999999854
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.8e-05 Score=68.84 Aligned_cols=111 Identities=24% Similarity=0.301 Sum_probs=72.4
Q ss_pred HHHHHHHh--c-------cCCCCCCCcChHHHHHHHHHHcCCCCCCEEE---eCCHHHHHHHHHHHhcCCCCeEEE-cCC
Q 025730 112 EVREALGQ--L-------KFPYIYPDPESRRLRAALAKDSGLESDHILV---GCGADELIDLIMRCVLDPGDKIVD-CPP 178 (249)
Q Consensus 112 ~v~~al~~--~-------~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~v---t~Ga~~~l~~~~~~~~~pGd~Vlv-~~P 178 (249)
.|++|+++ + ..+++|.|.|-+.|.+..|+.|+.+. -++ --++|++|.+++..+++|||+++. ...
T Consensus 28 KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfgaE~--ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~ 105 (403)
T PF06838_consen 28 KVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGAED--ALVRPQFVSGTHAIALALFGVLRPGDELLSITGK 105 (403)
T ss_dssp HHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT-SE--EEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS
T ss_pred HHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCchh--hhhcccccchHHHHHHHHHhcCCCCCeEEEcCCC
Confidence 56677764 1 12355667788889999999998432 221 235799999999999999999994 333
Q ss_pred CChhHHHHH----------HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEc
Q 025730 179 TFTMYEFDA----------AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLT 225 (249)
Q Consensus 179 ~y~~~~~~~----------~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~ 225 (249)
-|....... ..+|.+...|++.+++.+|.+.++++++ .++|+|+|.
T Consensus 106 PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~-~~tk~v~IQ 161 (403)
T PF06838_consen 106 PYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALK-PNTKMVLIQ 161 (403)
T ss_dssp --CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH-TTEEEEEEE
T ss_pred chhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhc-cCceEEEEe
Confidence 455444444 2367899999988899999999999998 799999987
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.3e-05 Score=69.31 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=98.1
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+ .+.++ ..|.+.+++.+ +... ..|..+...+|.+.|+++.+ .+.++++++++++++.+++
T Consensus 37 dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sGseA~e~Alk 114 (406)
T PRK12381 37 QGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--ADRVFFCNSGAEANEAALK 114 (406)
T ss_pred CCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCC--CCeEEEcCCcHHHHHHHHH
Confidence 45567888764 22332 35778877765 3321 22333335678888888775 4689999999999999988
Q ss_pred Hhc--------CCCCeEEEcCCCChhHHHHHHHCCCEEEE----ecCCC----CCCCCHHHHHHhhccCCceEEEEcCCC
Q 025730 165 CVL--------DPGDKIVDCPPTFTMYEFDAAVNGAAVVK----VPRKS----DFSLNVELIADAVEREKPKCIFLTSPN 228 (249)
Q Consensus 165 ~~~--------~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~----v~~~~----~~~id~e~l~~~i~~~~~k~i~l~~Pn 228 (249)
... ....+|+..+..|..+...+...+..... .+... ....|++.+++.++ .++++|++ .|.
T Consensus 115 ~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~aavii-EPv 192 (406)
T PRK12381 115 LARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALID-DQTCAVIV-EPI 192 (406)
T ss_pred HHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhcc-CCeeEEEE-eCC
Confidence 641 13478999999997655433332221110 01000 11247899999997 57777776 799
Q ss_pred CccccCCC--hH--HHHHHHhhhhC
Q 025730 229 NPDGRFSW--TS--SWIWGISSEHN 249 (249)
Q Consensus 229 NPTG~~~~--~~--e~i~~i~~~~~ 249 (249)
|++|.++. .+ +.+.++|++||
T Consensus 193 ~~~gg~~~~~~~~l~~l~~l~~~~~ 217 (406)
T PRK12381 193 QGEGGVIPADKAFLQGLRELCDRHN 217 (406)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 99987653 33 55788999986
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3e-05 Score=72.64 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=100.4
Q ss_pred CCHHHHHHHHh-----ccCCCCCCCcC--hHHHHHHHHHHcCCCC-CCEEEeCCHHHHHHHHHHHhcC-----C---CC-
Q 025730 109 PPPEVREALGQ-----LKFPYIYPDPE--SRRLRAALAKDSGLES-DHILVGCGADELIDLIMRCVLD-----P---GD- 171 (249)
Q Consensus 109 ~p~~v~~al~~-----~~~~~~Yp~~g--~~~lr~~la~~~~~~~-~~I~vt~Ga~~~l~~~~~~~~~-----p---Gd- 171 (249)
+++...+.+.. +.....||... ..++...+++.++.+. -.=.+|.|+|+++.+.+.+.-. . +.
T Consensus 74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~ 153 (460)
T COG0076 74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGK 153 (460)
T ss_pred CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 33455555543 22224555321 2345555666667743 3567999999999987765411 1 11
Q ss_pred -----eEEEcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhccCCceE--EEEcCCCCccccCCChHHHHHH
Q 025730 172 -----KIVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVEREKPKC--IFLTSPNNPDGRFSWTSSWIWG 243 (249)
Q Consensus 172 -----~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~~~~k~--i~l~~PnNPTG~~~~~~e~i~~ 243 (249)
+|+++.-.|..+...+...|.+...++... ++.+|++++++++++ .+-. |+-+-.+.+||.+ ++.+.+..
T Consensus 154 ~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~-~t~~g~vV~~aGtT~~G~i-Ddi~~ia~ 231 (460)
T COG0076 154 PGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDE-NTIGGVVVGTAGTTDTGSI-DDIEELAD 231 (460)
T ss_pred cCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHh-hccCceEEEEecCCCCCcc-CCHHHHHH
Confidence 689999999999999999999999999655 799999999999984 4433 7767889999999 89999999
Q ss_pred HhhhhC
Q 025730 244 ISSEHN 249 (249)
Q Consensus 244 i~~~~~ 249 (249)
||++++
T Consensus 232 ia~~~~ 237 (460)
T COG0076 232 IAEEYG 237 (460)
T ss_pred HHHHcC
Confidence 999874
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.8e-05 Score=72.34 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=78.4
Q ss_pred EEEeCCHHHHHHHHHHHh----cC----------------------CCCeEEEcCCCChhHHHHHHHCCC---EEEEecC
Q 025730 149 ILVGCGADELIDLIMRCV----LD----------------------PGDKIVDCPPTFTMYEFDAAVNGA---AVVKVPR 199 (249)
Q Consensus 149 I~vt~Ga~~~l~~~~~~~----~~----------------------pGd~Vlv~~P~y~~~~~~~~~~G~---~v~~v~~ 199 (249)
-++|+|++++...++.+- +. ++..|++..-.|......++..|. +++.||.
T Consensus 162 G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~ 241 (522)
T TIGR03799 162 GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKT 241 (522)
T ss_pred eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEe
Confidence 577899999887765432 11 235688888889988888888888 7999998
Q ss_pred CCCCCCCHHHHHHhhcc---CCceEEEEc--CCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVER---EKPKCIFLT--SPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~---~~~k~i~l~--~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++++.+|+++|++++++ .+++.++|+ ..++.||.+ .+.+.+..+|+++|
T Consensus 242 d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGai-Dpl~eIa~i~~~~g 295 (522)
T TIGR03799 242 DANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNI-DPLDEMADIAQELG 295 (522)
T ss_pred CCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCc-CCHHHHHHHHHHcC
Confidence 88899999999999852 355666555 557799999 78888889999875
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00016 Score=66.44 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=94.8
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccC----CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKF----PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~----~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..+ ...++ ..|.+.+++.+ +.. ...|+.....+|.+.|+++++ .+.++++++++++.+.+++
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~~--~~~~~f~~SGseA~e~Alk 110 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATF--ADKVFFCNSGAEANEAALK 110 (397)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCC--CCEEEEeCCcHHHHHHHHH
Confidence 45678999775 23332 46788888765 332 123333335678888888876 4689999999999999998
Q ss_pred Hhc-------CCC-CeEEEcCCCChhHHH-HHHHCCCE------------EEEecCCCCCCCCHHHHHHhhccCCceEEE
Q 025730 165 CVL-------DPG-DKIVDCPPTFTMYEF-DAAVNGAA------------VVKVPRKSDFSLNVELIADAVEREKPKCIF 223 (249)
Q Consensus 165 ~~~-------~pG-d~Vlv~~P~y~~~~~-~~~~~G~~------------v~~v~~~~~~~id~e~l~~~i~~~~~k~i~ 223 (249)
... .+| ++|+..+-.|..... .....|.. +..++. .|++++++.++ .++++|+
T Consensus 111 ~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~-~~~aavi 184 (397)
T TIGR03246 111 LARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-----NDLAAAKALIS-DKTCAVI 184 (397)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-----CCHHHHHHHhc-cCeEEEE
Confidence 641 123 567777777764432 22323321 122221 37899999997 5788888
Q ss_pred EcCCCCccccCCCh-H--HHHHHHhhhhC
Q 025730 224 LTSPNNPDGRFSWT-S--SWIWGISSEHN 249 (249)
Q Consensus 224 l~~PnNPTG~~~~~-~--e~i~~i~~~~~ 249 (249)
+..++++.|...++ + +.+.++|++||
T Consensus 185 ~Epi~~~~G~~~~~~~~l~~l~~lc~~~g 213 (397)
T TIGR03246 185 VEPIQGEGGVVPADPAFLKGLRELCDRHN 213 (397)
T ss_pred EecccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 77545555655333 3 55788999986
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=3e-05 Score=70.46 Aligned_cols=130 Identities=17% Similarity=0.077 Sum_probs=89.4
Q ss_pred CCCCCCHHHHHHHHh-ccC-----------CCCCCC--cChHHHHHHHHHHcCCC-CCCEEE-eCCHHHHHHHHHHHhcC
Q 025730 105 NPYGPPPEVREALGQ-LKF-----------PYIYPD--PESRRLRAALAKDSGLE-SDHILV-GCGADELIDLIMRCVLD 168 (249)
Q Consensus 105 ~~~~~p~~v~~al~~-~~~-----------~~~Yp~--~g~~~lr~~la~~~~~~-~~~I~v-t~Ga~~~l~~~~~~~~~ 168 (249)
-|...|+.|++++.. +.. .++-++ .-..+.++.++++++.+ ..+|++ +++++.+++.++..++.
T Consensus 10 GP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~ 89 (360)
T PRK05355 10 GPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG 89 (360)
T ss_pred CCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC
Confidence 355678899999875 311 111121 12567889999999973 345655 46778889999999999
Q ss_pred CCCeEEEcCCCCh--hHHHHHHHCCCEEEEecCCC-CCCCCHHHHHH-hhccCCceEEEEcCCCCccccCCC
Q 025730 169 PGDKIVDCPPTFT--MYEFDAAVNGAAVVKVPRKS-DFSLNVELIAD-AVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 169 pGd~Vlv~~P~y~--~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~-~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
+||++++..-+.. .+...++.+|.. ..+..+. ....+..++++ +++ .++++|.+++-.|.||...+
T Consensus 90 ~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~-~~~~~V~~th~eTstGv~~~ 159 (360)
T PRK05355 90 GGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLS-DDAAYVHYTSNETIDGTEFH 159 (360)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCCCCCCChhhccCC-CCCCEEEEccCCCcceEecC
Confidence 9999887766653 566778888865 5555332 33344444444 676 57999999999999999963
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00026 Score=65.11 Aligned_cols=148 Identities=13% Similarity=0.241 Sum_probs=92.8
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCCCC----CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFPYI----YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~~~----Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
++...||+..| ...++ ..|.+.+++.+ +..... +......+|.+.|+++.+ .+.++++++++++...+++
T Consensus 38 dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~sGseA~e~a~k 115 (403)
T PRK05093 38 QGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATF--AERVFFANSGAEANEAAFK 115 (403)
T ss_pred CCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCC--CCEEEEeCchHHHHHHHHH
Confidence 45668898776 23333 56778877765 322111 122224578888888765 3689999999999999988
Q ss_pred Hhc--------CCCCeEEEcCCCChhHHH-HHHHCC------------CEEEEecCCCCCCCCHHHHHHhhccCCceEEE
Q 025730 165 CVL--------DPGDKIVDCPPTFTMYEF-DAAVNG------------AAVVKVPRKSDFSLNVELIADAVEREKPKCIF 223 (249)
Q Consensus 165 ~~~--------~pGd~Vlv~~P~y~~~~~-~~~~~G------------~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~ 223 (249)
... ...++|+..+-.|..... .....| ..++.++. -|++.+++.+. .++++|+
T Consensus 116 lar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~-~~~aaii 189 (403)
T PRK05093 116 LARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-----NDLAAVKAVID-DHTCAVV 189 (403)
T ss_pred HHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-----CCHHHHHHHhc-CCeEEEE
Confidence 541 123567777777754322 222111 11222221 27899999887 5788888
Q ss_pred EcCCCCccccCC--ChH--HHHHHHhhhhC
Q 025730 224 LTSPNNPDGRFS--WTS--SWIWGISSEHN 249 (249)
Q Consensus 224 l~~PnNPTG~~~--~~~--e~i~~i~~~~~ 249 (249)
++ |.||+|.++ +.+ +.+..+|++||
T Consensus 190 ie-p~~~~gg~~~~~~~~l~~l~~l~~~~g 218 (403)
T PRK05093 190 VE-PIQGEGGVIPATPEFLQGLRELCDQHN 218 (403)
T ss_pred Ee-cccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 66 888998765 333 55788999886
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.1e-05 Score=68.81 Aligned_cols=116 Identities=20% Similarity=0.175 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCCC-------CCEEEeCCHHHHHHHHHHHhc--------CCC-----C-eEEEcCCCChhHHHHHHHCC
Q 025730 133 RLRAALAKDSGLES-------DHILVGCGADELIDLIMRCVL--------DPG-----D-KIVDCPPTFTMYEFDAAVNG 191 (249)
Q Consensus 133 ~lr~~la~~~~~~~-------~~I~vt~Ga~~~l~~~~~~~~--------~pG-----d-~Vlv~~P~y~~~~~~~~~~G 191 (249)
++.+.+++++|++. ..=++|+|+++++...+.+.- ..| + .|++.+-+|......+...|
T Consensus 83 ~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lG 162 (373)
T PF00282_consen 83 EVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILG 162 (373)
T ss_dssp HHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTT
T ss_pred HHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcceee
Confidence 45556666677762 246789999999987765431 112 2 46677778888999999999
Q ss_pred CEEEEecCCCCCCCCHHHHHHhhccC--C--ce-EEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 192 AAVVKVPRKSDFSLNVELIADAVERE--K--PK-CIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 192 ~~v~~v~~~~~~~id~e~l~~~i~~~--~--~k-~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
..++.||.++++.+|+++|++++++. + +- +|+.+-.+..||.+ ++.+.+..||+++|
T Consensus 163 lg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~-D~l~~i~~i~~~~~ 224 (373)
T PF00282_consen 163 LGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI-DPLEEIADICEKYN 224 (373)
T ss_dssp SEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB--SHHHHHHHHHHCT
T ss_pred eEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccc-cCHHHHhhhccccc
Confidence 99999999888999999999987531 1 22 45555678889999 88899999999875
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=97.97 E-value=6e-05 Score=68.46 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=83.8
Q ss_pred CCCCCHHHHHHHHhcc--C---CCCCCC--cChHHHHHHHHHHcCCCCC-CEEEe-CCHHHHHHHHHHHhcCCCCeEEEc
Q 025730 106 PYGPPPEVREALGQLK--F---PYIYPD--PESRRLRAALAKDSGLESD-HILVG-CGADELIDLIMRCVLDPGDKIVDC 176 (249)
Q Consensus 106 ~~~~p~~v~~al~~~~--~---~~~Yp~--~g~~~lr~~la~~~~~~~~-~I~vt-~Ga~~~l~~~~~~~~~pGd~Vlv~ 176 (249)
|...++.+++++.... . .++-++ .-..+.|+.++++++++.+ +|+++ .++|.+++.++..++.+ +.+++.
T Consensus 11 P~~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~ 89 (361)
T TIGR01366 11 PSKVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLS 89 (361)
T ss_pred CcCCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEe
Confidence 4556788999986421 1 122232 1367889999999998544 78886 55999999999998743 344444
Q ss_pred CCCCh-hHHHHHHHC--CCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH
Q 025730 177 PPTFT-MYEFDAAVN--GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 177 ~P~y~-~~~~~~~~~--G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~ 240 (249)
.-.|. .+...+... +.++..++.+.+..++. .+. .++|+|.+++-.|.||.+.+.+++
T Consensus 90 ~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~lV~~~h~et~tG~~~pi~~I 150 (361)
T TIGR01366 90 FGEFSSKFAKAVKLAPWLGEPIIVTADPGSAPEP-----QAD-PGVDVIAWAHNETSTGVAVPVRRP 150 (361)
T ss_pred cCHHHHHHHHHHHhhhccCCceEEecCCCCCCCC-----ccC-CCCCEEEEcccCCccceecccccc
Confidence 55554 455555542 33666666443333333 233 689999999999999999765443
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00015 Score=68.35 Aligned_cols=150 Identities=14% Similarity=0.161 Sum_probs=96.7
Q ss_pred CCCCeeeccCCCCCCC---CCHHHHHHHHh-ccC---C-CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANENPYG---PPPEVREALGQ-LKF---P-YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~---~p~~v~~al~~-~~~---~-~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..+.-... ..|.+.+++.+ +.. . ..|..+...+|.+.|+++++ .+.++++++++++.+.+++
T Consensus 73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~--~~~~~f~~SGseA~e~Alk 150 (474)
T PLN02624 73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFG--YDMVLPMNTGAEGVETAIK 150 (474)
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcC--CCeEEEeCChHHHHHHHHH
Confidence 4566788877633222 36788888765 322 1 12344446789999999887 4589999999999999887
Q ss_pred HhcC--------C-CC-eEEEcCCCChhHHHHHHH-CCC------------EEEEecCCCCCCCCHHHHHHhhcc--CCc
Q 025730 165 CVLD--------P-GD-KIVDCPPTFTMYEFDAAV-NGA------------AVVKVPRKSDFSLNVELIADAVER--EKP 219 (249)
Q Consensus 165 ~~~~--------p-Gd-~Vlv~~P~y~~~~~~~~~-~G~------------~v~~v~~~~~~~id~e~l~~~i~~--~~~ 219 (249)
.... + ++ +|+...-.|......+.. .+- .+..++. -|++.+++.++. .++
T Consensus 151 lAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~i 225 (474)
T PLN02624 151 LARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-----GDLDALEKIFEEDGDRI 225 (474)
T ss_pred HHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-----CCHHHHHHHHHhCCCCE
Confidence 4321 1 33 577776666533222111 110 1122222 268889888853 457
Q ss_pred eEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 220 KCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 220 k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.+|++..++|++|.+++++ +.+.++|++||
T Consensus 226 aaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~g 258 (474)
T PLN02624 226 AAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHN 258 (474)
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 8899999999999998765 45788999886
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00015 Score=67.19 Aligned_cols=149 Identities=10% Similarity=0.069 Sum_probs=102.3
Q ss_pred eeeccCCCCCCCCCHHHHHHHHhccCCCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcC-CCCeEE
Q 025730 97 IVKIDANENPYGPPPEVREALGQLKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLD-PGDKIV 174 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~~~~~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~-pGd~Vl 174 (249)
.|||=+-.-.-.+++.+.++|..-+ ..| .++...+|.+.+++++| .+.++.|..+..+-.++++.+++ |||+++
T Consensus 43 ~IDLrSDTgT~apS~~m~aAM~~GD--D~Y~gdpSv~~Lee~vael~G--~E~alpthqGRgaE~Il~~~~~~~~g~e~g 118 (467)
T TIGR02617 43 FIDLLTDSGTGAVTQSMQAAMMRGD--EAYSGSRSYYALAESVKNIFG--YQYTIPTHQGRGAEQIYIPVLIKKREQEKG 118 (467)
T ss_pred EEECccCCCCCCCCHHHHHHHHcCC--cccccCchHHHHHHHHHHHhC--CceEEECCCCchHHHHHHHhhccccccccc
Confidence 5787553333236788888887522 457 56778999999999999 45688887778888888888888 788777
Q ss_pred EcCC-------C-ChhHHHHHHHCCCEEEEecC----------CCCCCCCHHHHHHhhccC---CceEEEEcCCCCc-cc
Q 025730 175 DCPP-------T-FTMYEFDAAVNGAAVVKVPR----------KSDFSLNVELIADAVERE---KPKCIFLTSPNNP-DG 232 (249)
Q Consensus 175 v~~P-------~-y~~~~~~~~~~G~~v~~v~~----------~~~~~id~e~l~~~i~~~---~~k~i~l~~PnNP-TG 232 (249)
+..+ . |......+...|+.+..++. ..++.+|+++++++++.. +...+...--+|- -|
T Consensus 119 ~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GG 198 (467)
T TIGR02617 119 LDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGG 198 (467)
T ss_pred ccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCC
Confidence 5543 1 22334566779998887642 234689999999999742 2333332222344 36
Q ss_pred cCCChH--HHHHHHhhhhC
Q 025730 233 RFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 233 ~~~~~~--e~i~~i~~~~~ 249 (249)
++++.+ +.+..+|++||
T Consensus 199 qpvslenlr~V~~la~~~G 217 (467)
T TIGR02617 199 QPVSLANLKAVYEIAKKYD 217 (467)
T ss_pred EEeCHHHHHHHHHHHHHcC
Confidence 777777 45888999986
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00022 Score=67.74 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=98.4
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-c--cCCCCCCC------c-ChHHH----HHHHHHHcCCCC----CCEEEeCCHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-L--KFPYIYPD------P-ESRRL----RAALAKDSGLES----DHILVGCGAD 156 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~--~~~~~Yp~------~-g~~~l----r~~la~~~~~~~----~~I~vt~Ga~ 156 (249)
..-|.|=..||. .++.+++++.. + .+..+||. . ..+++ .+...+.|+++. -+|-.- +++
T Consensus 148 ~~~l~LIASEN~--~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs 224 (586)
T PLN02271 148 FKGIELIASENF--VCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCT 224 (586)
T ss_pred hcCeeecccccc--CCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHH
Confidence 445788778885 46888888875 2 22233332 1 12333 233444567665 355554 567
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCChhHHHH---------HHHCCCEEEEec--C-CCCCCCCHHHHHHhhccCCceEEEE
Q 025730 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFD---------AAVNGAAVVKVP--R-KSDFSLNVELIADAVEREKPKCIFL 224 (249)
Q Consensus 157 ~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~---------~~~~G~~v~~v~--~-~~~~~id~e~l~~~i~~~~~k~i~l 224 (249)
.+...++.++++|||+|+..+..|..+... +...|..+..++ . .+++.+|.+++++.+...++|+|++
T Consensus 225 ~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~ 304 (586)
T PLN02271 225 SANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILIC 304 (586)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEE
Confidence 788888999999999999988877644332 233565544444 4 3567899999999555589999998
Q ss_pred cCCCCccccCCChHHHHHHHhhhhC
Q 025730 225 TSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 225 ~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
..-.|| .. .+.+.+.+||+++|
T Consensus 305 g~Sayp--r~-~D~~~i~eIAdevG 326 (586)
T PLN02271 305 GGSSYP--RE-WDYARFRQIADKCG 326 (586)
T ss_pred Cchhcc--Cc-CCHHHHHHHHHHcC
Confidence 777777 33 35567788898865
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00019 Score=71.87 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh----cCC----CCeEEEcCCCChhHHHHHHHCCCEEEEecCCCC
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV----LDP----GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD 202 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~----~~p----Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~ 202 (249)
..+|.+.+++.+|.+.-.+.-.+|+ ++-...++++ ..+ .++|+++.-.|......+...|++++.++.+++
T Consensus 545 i~elq~~l~eLtGmd~~Sl~p~sGA-~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~ 623 (954)
T PRK12566 545 IDELEAWLCAITGFDAICMQPNSGA-QGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVIVECDPD 623 (954)
T ss_pred HHHHHHHHHHHHCCCeEeecCCchH-HHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEEEEeccCCC
Confidence 3567788888888655433333443 3332333332 222 267888888885444557779999999998878
Q ss_pred CCCCHHHHHHhhcc--CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 FSLNVELIADAVER--EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 ~~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.+|+++|++++++ .++.+|++++|++-.+. ..+.+.+.++++++|
T Consensus 624 G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~-e~~V~eI~~iah~~G 671 (954)
T PRK12566 624 GNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVY-EEGIREICEVVHQHG 671 (954)
T ss_pred CCcCHHHHHHHhhccCCCEEEEEEEecCcCcee-cchHHHHHHHHHHcC
Confidence 89999999999863 46778888888875444 355677888888875
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=68.92 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCCCC-------CEEEeCCHHHHHHHHHHHh----cC-------CCCeEEEcCCCChhHHHHHHHCCC---
Q 025730 134 LRAALAKDSGLESD-------HILVGCGADELIDLIMRCV----LD-------PGDKIVDCPPTFTMYEFDAAVNGA--- 192 (249)
Q Consensus 134 lr~~la~~~~~~~~-------~I~vt~Ga~~~l~~~~~~~----~~-------pGd~Vlv~~P~y~~~~~~~~~~G~--- 192 (249)
+.+.+++.+|++.+ .=++++|++++...++.+. .+ +.-.|++.+-+|......+...|.
T Consensus 175 vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~ 254 (539)
T PLN02590 175 VLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEE 254 (539)
T ss_pred HHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHcCCCcc
Confidence 44555555677642 3567899998887655432 11 112556678888899999999888
Q ss_pred EEEEecCC--CCCCCCHHHHHHhhccC-----CceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 193 AVVKVPRK--SDFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 193 ~v~~v~~~--~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.++.||.+ +++.+|+++|+++|++. .+-+|+.+-.+..||.+ ++.+.+..||++||
T Consensus 255 ~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGai-Dpl~~Ia~i~~~~g 317 (539)
T PLN02590 255 NIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV-DPLVPLGNIAKKYG 317 (539)
T ss_pred cEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCccc-CCHHHHHHHHHHhC
Confidence 58888876 46789999999999631 23455555678889999 89999999999986
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00034 Score=64.93 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=97.8
Q ss_pred CCCCeeeccCCCCC--C-CCCHHHHHHHHh-ccCC-C-CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANENP--Y-GPPPEVREALGQ-LKFP-Y-IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~~~--~-~~p~~v~~al~~-~~~~-~-~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.+...+|+..+... + ..++.+.+++.+ +... . .++.....+|.+.|++.+. ..+.++++++++++++.+++..
T Consensus 48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~la~~L~~~~~-~~~~v~~~~sGseA~e~Aik~a 126 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELVP-SIEMVRMVNSGTEATMSAIRLA 126 (426)
T ss_pred CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCC-CCCEEEEecCHHHHHHHHHHHH
Confidence 45678999887532 2 356788887765 3322 2 2344556778888888763 2568999999999999999875
Q ss_pred cC--CCCeEEEcCCCChhHHHHHHHC-CC------------EEEEecCC--CCCCCCHHHHHHhhcc--CCceEEEEc-C
Q 025730 167 LD--PGDKIVDCPPTFTMYEFDAAVN-GA------------AVVKVPRK--SDFSLNVELIADAVER--EKPKCIFLT-S 226 (249)
Q Consensus 167 ~~--pGd~Vlv~~P~y~~~~~~~~~~-G~------------~v~~v~~~--~~~~id~e~l~~~i~~--~~~k~i~l~-~ 226 (249)
.. .+++|+..++.|..+...+... |. ....+... .....|++.+++.++. .++.+|++. -
T Consensus 127 ~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv 206 (426)
T PRK00062 127 RGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPV 206 (426)
T ss_pred HHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCC
Confidence 33 3589999999998765332221 11 00000000 0001378888888752 356677766 3
Q ss_pred CCCccccCCChH---HHHHHHhhhhC
Q 025730 227 PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 227 PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++| +|.+.++. +.+.++|++||
T Consensus 207 ~~~-~G~~~~~~~~l~~l~~l~~~~~ 231 (426)
T PRK00062 207 AGN-MGVVPPKPGFLEGLRELCDEHG 231 (426)
T ss_pred cCC-CCCcCCCHHHHHHHHHHHHHcC
Confidence 455 78886534 45788999886
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00031 Score=66.21 Aligned_cols=150 Identities=15% Similarity=0.122 Sum_probs=90.1
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-c--cCCCCCCC----cC---hHHHHH----HHHHHcCCCCCCEEE---eCCHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-L--KFPYIYPD----PE---SRRLRA----ALAKDSGLESDHILV---GCGADE 157 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~--~~~~~Yp~----~g---~~~lr~----~la~~~~~~~~~I~v---t~Ga~~ 157 (249)
.+.|.|=..||.. ++.+++++.. + .+..+||. .| ..++.+ ...+.|+...+.+++ ..+++.
T Consensus 34 ~~~l~liasen~~--s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~ 111 (475)
T PLN03226 34 WKGLELIASENFT--SRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSP 111 (475)
T ss_pred HcCeeEecCCccC--CHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHH
Confidence 3458888888864 5788888765 3 23333321 12 333333 244456666555543 356677
Q ss_pred HHHHHHHHhcCCCCeEEEcCC---CChhHHHH---HHHCCCEE--E--EecC-CCCCCCCHHHHHHhhccCCceEEEEcC
Q 025730 158 LIDLIMRCVLDPGDKIVDCPP---TFTMYEFD---AAVNGAAV--V--KVPR-KSDFSLNVELIADAVEREKPKCIFLTS 226 (249)
Q Consensus 158 ~l~~~~~~~~~pGd~Vlv~~P---~y~~~~~~---~~~~G~~v--~--~v~~-~~~~~id~e~l~~~i~~~~~k~i~l~~ 226 (249)
+...++.++++|||+|+..+. +|...... .+..+... . .+.. .+++.+|++++++.+.+.++|+|++ .
T Consensus 112 AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~-~ 190 (475)
T PLN03226 112 ANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIA-G 190 (475)
T ss_pred HHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEE-e
Confidence 888899999999999998553 22221111 11112221 1 2222 2567899999999987567887765 3
Q ss_pred CCCccccCCChHHHHHHHhhhhC
Q 025730 227 PNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 227 PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
-++ +|... +.+.+.++|+++|
T Consensus 191 ~S~-~s~~~-D~a~i~~ia~~~g 211 (475)
T PLN03226 191 ASA-YPRDW-DYARMRKIADKVG 211 (475)
T ss_pred cCc-CCCcc-CHHHHHHHHHHcC
Confidence 344 67664 5557778999875
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0004 Score=63.76 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=96.0
Q ss_pred CCCCeeeccCCCCCCC---CCHHHHHHHHh-ccC-C--C-CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANENPYG---PPPEVREALGQ-LKF-P--Y-IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~---~p~~v~~al~~-~~~-~--~-~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+-.... ..|.+.+++.+ +.. . . .+......+|.+.++++++ .+.++++++++++...++.
T Consensus 35 ~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~SGs~A~e~ai~ 112 (401)
T TIGR01885 35 EGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFG--YDKVLPMNTGAEAVETAIK 112 (401)
T ss_pred CCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhcC--CCEEEEeCccHHHHHHHHH
Confidence 3456788877633322 35788888765 321 1 1 1222335789999999987 3689999999999999988
Q ss_pred Hhc---------CC-CCeEEEcCCCChhH-HHHHHHCCC------------EEEEecCCCCCCCCHHHHHHhhcc--CCc
Q 025730 165 CVL---------DP-GDKIVDCPPTFTMY-EFDAAVNGA------------AVVKVPRKSDFSLNVELIADAVER--EKP 219 (249)
Q Consensus 165 ~~~---------~p-Gd~Vlv~~P~y~~~-~~~~~~~G~------------~v~~v~~~~~~~id~e~l~~~i~~--~~~ 219 (249)
... .+ .++|+...-.|... .......|. .+..++. .|++++++.+++ .++
T Consensus 113 ~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~ 187 (401)
T TIGR01885 113 LARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-----NNLEALEEALEDHGPNV 187 (401)
T ss_pred HHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-----CCHHHHHHHHHhcCCCE
Confidence 641 13 35677777776532 222222221 1222322 268889888853 356
Q ss_pred eEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 220 KCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 220 k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.+|++..+++++|.+.++. +.+.++|++||
T Consensus 188 ~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~ 220 (401)
T TIGR01885 188 CAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHN 220 (401)
T ss_pred EEEEEeCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 6787778899999997644 56888999885
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0004 Score=70.42 Aligned_cols=138 Identities=12% Similarity=0.075 Sum_probs=94.0
Q ss_pred ccCCCCCCCCCHHHHHHHHh-ccCC---CCC-CC--cC----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-c
Q 025730 100 IDANENPYGPPPEVREALGQ-LKFP---YIY-PD--PE----SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-L 167 (249)
Q Consensus 100 L~~~~~~~~~p~~v~~al~~-~~~~---~~Y-p~--~g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~ 167 (249)
++.|--+.-.|+.+.+++.+ .... ..| |+ .| ..+++..+++++|++++++.+..|++.+.+.+++++ +
T Consensus 108 iG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~ 187 (993)
T PLN02414 108 IGMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNI 187 (993)
T ss_pred cCCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhc
Confidence 34444455567788777765 3222 344 32 22 467899999999999999999999999999888766 4
Q ss_pred CCC--CeEEEcCCCChhHH----HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHH
Q 025730 168 DPG--DKIVDCPPTFTMYE----FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWI 241 (249)
Q Consensus 168 ~pG--d~Vlv~~P~y~~~~----~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i 241 (249)
.+| |+|++.+-.|+.+. ..++..|++++.++.+.. + ... ..+-.+++.+|| -+|.+. +.+.+
T Consensus 188 ~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~---~------~~~-~~v~~vlvq~P~-~~G~v~-dv~~I 255 (993)
T PLN02414 188 LKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF---D------YSS-GDVCGVLVQYPA-TDGEVL-DYAEF 255 (993)
T ss_pred ccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh---c------ccc-CceEEEEEecCC-CCeEEc-CHHHH
Confidence 544 78999999998554 344557999999986321 1 111 234345545565 499995 56667
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|+++|
T Consensus 256 ~~~ah~~G 263 (993)
T PLN02414 256 VKNAHANG 263 (993)
T ss_pred HHHHHHcC
Confidence 77788764
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00022 Score=67.50 Aligned_cols=116 Identities=14% Similarity=0.114 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCCCCC-------CEEEeCCHHHHHHHHHHHh----cC-------CCCeEEEcCCCChhHHHHHHHCCCE-
Q 025730 133 RLRAALAKDSGLESD-------HILVGCGADELIDLIMRCV----LD-------PGDKIVDCPPTFTMYEFDAAVNGAA- 193 (249)
Q Consensus 133 ~lr~~la~~~~~~~~-------~I~vt~Ga~~~l~~~~~~~----~~-------pGd~Vlv~~P~y~~~~~~~~~~G~~- 193 (249)
++.+.+++++|++.+ .-++|+|++++...++.+. ++ +.-.|++.+-+|......+...|..
T Consensus 126 ~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~ 205 (490)
T PLN02880 126 IVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHP 205 (490)
T ss_pred HHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCCH
Confidence 355566666687653 3678899999876655432 11 1124667788899999999999984
Q ss_pred --EEEecCC--CCCCCCHHHHHHhhccC-----CceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 194 --VVKVPRK--SDFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 194 --v~~v~~~--~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++.||.+ +++.+|+++|++++++. .+-+|+.+-.+..||.+ .+.+.+..+|++||
T Consensus 206 ~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~Gai-Dpl~eI~~i~~~~~ 269 (490)
T PLN02880 206 ENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAV-DPLLELGKIAKSNG 269 (490)
T ss_pred HHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCccc-CcHHHHHHHHHHcC
Confidence 7788865 36789999999998631 13455555678899999 78899999999986
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00039 Score=63.34 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=98.1
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccC----CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKF----PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~----~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+- ..++ ..|.+.+++.+ +.. ...|+.....+|.+.++++.+ .+.++++++++++++.+++
T Consensus 22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~SGseA~e~Alk 99 (364)
T PRK04013 22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWVN--YEYVYMGNSGTEAVEAALK 99 (364)
T ss_pred CCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhcC--CCEEEEeCchHHHHHHHHH
Confidence 456678887653 3343 34677777765 332 123554456778888888876 3589999999999999988
Q ss_pred Hh-cCCC-CeEEEcCCCChhHHHHHHH-CC-------CE-----EEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCC
Q 025730 165 CV-LDPG-DKIVDCPPTFTMYEFDAAV-NG-------AA-----VVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNN 229 (249)
Q Consensus 165 ~~-~~pG-d~Vlv~~P~y~~~~~~~~~-~G-------~~-----v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnN 229 (249)
.. ...| ++|+...-+|......+.. .+ .. +..++. .|++.+++.+. .++++|++.....
T Consensus 100 lar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~-~~~aAvivEpi~g 173 (364)
T PRK04013 100 FARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-----NDVEAAKEAIT-KETAAVIFEPIQG 173 (364)
T ss_pred HHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-----CCHHHHHHHhc-CCcEEEEEcCCcC
Confidence 54 2345 8999999888654322222 11 11 112221 26889999887 6788888776666
Q ss_pred ccccCCChH---HHHHHHhhhhC
Q 025730 230 PDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 230 PTG~~~~~~---e~i~~i~~~~~ 249 (249)
-.|....+. +.+.++|++||
T Consensus 174 ~gG~~~~~~~yl~~lr~lc~~~g 196 (364)
T PRK04013 174 EGGIVPAKEEFVKTLRDLTEDVG 196 (364)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcC
Confidence 667765563 55788899986
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00024 Score=64.95 Aligned_cols=119 Identities=10% Similarity=-0.016 Sum_probs=86.5
Q ss_pred HHHHHHh--ccCCCCCCCc--ChHHHHHHHHHHcCCCCCC--EEEeCCHHHHHHHHHHHhc-CCCCeEEEcCCCCh-hHH
Q 025730 113 VREALGQ--LKFPYIYPDP--ESRRLRAALAKDSGLESDH--ILVGCGADELIDLIMRCVL-DPGDKIVDCPPTFT-MYE 184 (249)
Q Consensus 113 v~~al~~--~~~~~~Yp~~--g~~~lr~~la~~~~~~~~~--I~vt~Ga~~~l~~~~~~~~-~pGd~Vlv~~P~y~-~~~ 184 (249)
..+++.+ +...++-|.- -..+.++.+.+.++.+.+. ++++.|++.+++.++..++ ++||+|++.. .|+ .+.
T Consensus 19 ~~~~~~~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~ 97 (374)
T TIGR01365 19 SIEELKNAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWV 97 (374)
T ss_pred hHHHHhhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHH
Confidence 6677764 3333333432 2567788888888874433 5679999999999999998 5899999876 665 445
Q ss_pred -HHHHHCCC-EEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 185 -FDAAVNGA-AVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 185 -~~~~~~G~-~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
.+++..|. ++..+..+.+..+|+++++. + +.|+++|-...||+..+.+
T Consensus 98 ~eia~~~g~~~v~~l~~~~g~~~~~~~ve~--~----~~v~~vhnETSTGv~npv~ 147 (374)
T TIGR01365 98 TDVTKQLKLPDVRVLEAEYGKLPDLKKVDF--K----NDVVFTWNGTTSGVRVPNG 147 (374)
T ss_pred HHHHHhcCCCCcEEEcCCCCCCCCHHHcCC--C----CCEEEecCCCchheecccc
Confidence 78888999 47777766677889999973 1 2367888888999996653
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00092 Score=67.85 Aligned_cols=137 Identities=13% Similarity=0.104 Sum_probs=95.7
Q ss_pred ccCCCCCCCCCHHHHHHHHh-ccCCCCC-CC-----cC----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-c
Q 025730 100 IDANENPYGPPPEVREALGQ-LKFPYIY-PD-----PE----SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-L 167 (249)
Q Consensus 100 L~~~~~~~~~p~~v~~al~~-~~~~~~Y-p~-----~g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~ 167 (249)
++.|--+.-.|..+.+.+.+ -.+...| |. +| ..++++.++++.|++..++.+..+++.+.+.+++++ .
T Consensus 81 ig~G~y~~~~P~vi~~~i~~~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~ 160 (954)
T PRK05367 81 IGQGYYGTHTPPVILRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRV 160 (954)
T ss_pred cCCCCCCCcCcHHHHHHHHhCcchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhh
Confidence 45555555566667565554 2322344 32 23 357889999999999999999999999999888776 4
Q ss_pred CCC--CeEEEcCCCChhHH----HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHH
Q 025730 168 DPG--DKIVDCPPTFTMYE----FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWI 241 (249)
Q Consensus 168 ~pG--d~Vlv~~P~y~~~~----~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i 241 (249)
.++ |+|++++-.|+.+. ..++..|++++.++.+.+ ++ . .++-++++.+|| -+|.+. +.+.+
T Consensus 161 ~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d--~~--------~-~~~~~vlvq~p~-~~G~i~-d~~~i 227 (954)
T PRK05367 161 SKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA--LD--------H-DDVFGVLLQYPG-TSGEVR-DYTAL 227 (954)
T ss_pred ccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC--CC--------c-ccEEEEEEecCC-CCeeec-cHHHH
Confidence 454 89999999998554 345668999999986432 11 1 355566666774 599996 56667
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|+++|
T Consensus 228 ~~~ah~~G 235 (954)
T PRK05367 228 IAAAHARG 235 (954)
T ss_pred HHHHHHcC
Confidence 77787764
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00046 Score=62.81 Aligned_cols=156 Identities=16% Similarity=0.238 Sum_probs=101.8
Q ss_pred CCCCCeeeccCC--CCCCC-CCHHHHHHHHh-c---c-CCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 92 RKPEDIVKIDAN--ENPYG-PPPEVREALGQ-L---K-FPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 92 ~~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~---~-~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
..+...|||..| .+.++ ..|.+.+++.+ . . ..+.|.++...+|-+.|++..+ ..+.|+++|+++|+++.++
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~-~~d~vff~NSGaEA~EaAi 117 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSP-FADRVFFCNSGAEANEAAL 117 (404)
T ss_pred CCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCc-cccEEEEcCCcHHHHHHHH
Confidence 346678888776 34443 56888888875 2 2 2355665556778888888887 6889999999999999998
Q ss_pred HHh---cC-CC-CeEEEcCCCChhHHHHHHHCCCEEEEe----cCCCCCC----CCHHHHHHhhccCCceEEEEcCCCCc
Q 025730 164 RCV---LD-PG-DKIVDCPPTFTMYEFDAAVNGAAVVKV----PRKSDFS----LNVELIADAVEREKPKCIFLTSPNNP 230 (249)
Q Consensus 164 ~~~---~~-pG-d~Vlv~~P~y~~~~~~~~~~G~~v~~v----~~~~~~~----id~e~l~~~i~~~~~k~i~l~~PnNP 230 (249)
... .. ++ .+|+...-.|..-...+-..+.+..+- |.-.++. =|+++++++++ +++.+|++---.--
T Consensus 118 KlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~-~~taAvivEPIQGE 196 (404)
T COG4992 118 KLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAID-EDTAAVIVEPIQGE 196 (404)
T ss_pred HHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhc-cCeEEEEEecccCC
Confidence 753 22 22 367766666642111111112221110 1111111 18999999999 58999987776788
Q ss_pred cccCCChHHH---HHHHhhhhC
Q 025730 231 DGRFSWTSSW---IWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~~e~---i~~i~~~~~ 249 (249)
.|+...+.+. +.+||++||
T Consensus 197 gGV~~~~~~fl~~lr~lCd~~g 218 (404)
T COG4992 197 GGVIPAPPEFLKALRELCDEHG 218 (404)
T ss_pred CCCCCCCHHHHHHHHHHHHHhC
Confidence 8888777654 688999986
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.004 Score=58.53 Aligned_cols=147 Identities=13% Similarity=0.044 Sum_probs=93.6
Q ss_pred CCeeeccCCCC-CCCCCHHHHHHHHh-cc-CCCCC-------CCc-ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANEN-PYGPPPEVREALGQ-LK-FPYIY-------PDP-ESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~~-~~~~p~~v~~al~~-~~-~~~~Y-------p~~-g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.++++|+.|+- -+...+.++++..+ +. ++.+. ... ...+|.++||+++| .+..++.+.+..+...++
T Consensus 102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g--~e~all~sSGy~AN~~~i 179 (476)
T PLN02955 102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK--KEDCLVCPTGFAANMAAM 179 (476)
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC--CCcEEEECChHHHHHHHH
Confidence 46788887753 23455677766543 21 21111 111 13679999999999 455666677777766666
Q ss_pred HHhc--------------CCCCeEEEcCCCChhHHHHHHHC----CCEEEEecCCCCCCCCHHHHHHhhcc--CCceEEE
Q 025730 164 RCVL--------------DPGDKIVDCPPTFTMYEFDAAVN----GAAVVKVPRKSDFSLNVELIADAVER--EKPKCIF 223 (249)
Q Consensus 164 ~~~~--------------~pGd~Vlv~~P~y~~~~~~~~~~----G~~v~~v~~~~~~~id~e~l~~~i~~--~~~k~i~ 223 (249)
.+++ ..+|.|+.-.-.|.....-++.. +++++.++- -|++.|++.+++ .+.++|+
T Consensus 180 ~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-----ND~~~Le~~L~~~~~~~~~Vv 254 (476)
T PLN02955 180 VAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-----CDMYHLNSLLSSCKMKRKVVV 254 (476)
T ss_pred HHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-----CCHHHHHHHHHhCCCCceEEE
Confidence 6652 45567777666777666666665 577777663 378888888753 2334555
Q ss_pred EcCCCCccccCCChHHHHHHHhhhhC
Q 025730 224 LTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 224 l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+...-++.|.+ .+.+.+..+|++||
T Consensus 255 ~EgV~SmdGdi-apL~eL~~L~~~~g 279 (476)
T PLN02955 255 TDSLFSMDGDF-APMEELSQLRKKYG 279 (476)
T ss_pred EeCCCCCCCCc-CCHHHHHHHHHHcC
Confidence 44557889998 45777777888875
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0014 Score=60.10 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=105.1
Q ss_pred CCCeeeccCCCCC-CCCCHHHHHHHHh-ccC-C-----CC--CCCc-ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANENP-YGPPPEVREALGQ-LKF-P-----YI--YPDP-ESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~~-~~~p~~v~~al~~-~~~-~-----~~--Yp~~-g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
...+++|..|+-. +...+.++++..+ +.. + .+ +... -..+|.+.||+|+|. +..++-+++-.+...+
T Consensus 38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~--e~al~f~SGy~AN~~~ 115 (388)
T COG0156 38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGA--EAALLFSSGFVANLGL 115 (388)
T ss_pred CceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCC--CcEEEEcccchhHHHH
Confidence 3567888887642 3445666666554 221 1 11 2222 257899999999994 4555556667788888
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC-----CceEEEEcCCCCccccCCCh
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~~ 237 (249)
+.+++++||.|+.-.-.|.....-++..+++++.+.- .|+++|++.+++. +.++|+....=.-.|.+ -+
T Consensus 116 i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-----nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdi-Ap 189 (388)
T COG0156 116 LSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-----NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDI-AP 189 (388)
T ss_pred HHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-----CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCc-CC
Confidence 9999999999999999998888888899999988874 4789999988641 23555555665557887 46
Q ss_pred HHHHHHHhhhhC
Q 025730 238 SSWIWGISSEHN 249 (249)
Q Consensus 238 ~e~i~~i~~~~~ 249 (249)
...+..|+++||
T Consensus 190 L~~l~~L~~ky~ 201 (388)
T COG0156 190 LPELVELAEKYG 201 (388)
T ss_pred HHHHHHHHHHhC
Confidence 667777888875
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.001 Score=64.38 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh---c------C----------------------------------
Q 025730 132 RRLRAALAKDSGLESDHILVGCGADELIDLIMRCV---L------D---------------------------------- 168 (249)
Q Consensus 132 ~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~---~------~---------------------------------- 168 (249)
.++-+.+++++|.+..+=.+|+|++++....+... . +
T Consensus 126 ~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~ 205 (608)
T TIGR03811 126 EEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQI 205 (608)
T ss_pred HHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccch
Confidence 34666677777887666678899998877654331 1 0
Q ss_pred ---------CC------CeEEEcCCCChhHHHHHHHCCC---EEEEecCCCCCCCCHHHHHHhhcc---CC--ceEEEEc
Q 025730 169 ---------PG------DKIVDCPPTFTMYEFDAAVNGA---AVVKVPRKSDFSLNVELIADAVER---EK--PKCIFLT 225 (249)
Q Consensus 169 ---------pG------d~Vlv~~P~y~~~~~~~~~~G~---~v~~v~~~~~~~id~e~l~~~i~~---~~--~k~i~l~ 225 (249)
+| -+++++.-.|..+...+...|. .++.||.++++.+|+++|++++++ .+ +-+|+-+
T Consensus 206 ~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVat 285 (608)
T TIGR03811 206 DEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGV 285 (608)
T ss_pred hhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 00 0578888889999999999998 589999989999999999998853 22 3345556
Q ss_pred CCCCccccCCChHHHHHHHhh
Q 025730 226 SPNNPDGRFSWTSSWIWGISS 246 (249)
Q Consensus 226 ~PnNPTG~~~~~~e~i~~i~~ 246 (249)
-.+..+|.+ ++.+.+..||+
T Consensus 286 aGTT~~Gai-Dpl~eI~~l~~ 305 (608)
T TIGR03811 286 VGSTEEGAV-DGIDKIVALRN 305 (608)
T ss_pred cCCcCCccc-CCHHHHHHHHH
Confidence 678899999 88888888883
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=97.53 E-value=2.7e-05 Score=69.16 Aligned_cols=96 Identities=23% Similarity=0.398 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHcC------CCCCCEEEeCCHHHHHHHHHHHhcCC------CCeEEEcCCCChhHHHHHHHCCCEEEEec
Q 025730 131 SRRLRAALAKDSG------LESDHILVGCGADELIDLIMRCVLDP------GDKIVDCPPTFTMYEFDAAVNGAAVVKVP 198 (249)
Q Consensus 131 ~~~lr~~la~~~~------~~~~~I~vt~Ga~~~l~~~~~~~~~p------Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~ 198 (249)
..+|.+.|.+++. .+...|++++|++++++.++.++... --+|+...|.|+.|...............
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~ 124 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWA 124 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEE
T ss_pred cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccc
Confidence 5789999999873 24458999999999999999988432 14899999999999988766443322222
Q ss_pred -CCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 199 -RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 199 -~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
....|. +- +...+-+=++|+||||.|.+
T Consensus 125 Gda~~~~-~~-------~~~~~~IElVTSPNNPDG~l 153 (363)
T PF04864_consen 125 GDASNFK-NS-------DNPSPYIELVTSPNNPDGQL 153 (363)
T ss_dssp EECCCGT-T--------S-CCGEEEEEESS-TTT---
T ss_pred ccHHhhc-cC-------CCCCCeEEEEeCCCCCcccc
Confidence 111121 10 00234455789999999987
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00051 Score=60.74 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=99.2
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHH----hcc-C---CCC--CCCc-C-hHHHHHHHHHHcCCCCCCEEEeCCHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALG----QLK-F---PYI--YPDP-E-SRRLRAALAKDSGLESDHILVGCGADELID 160 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~----~~~-~---~~~--Yp~~-g-~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~ 160 (249)
.+.++|.|+.|.--.-++....+..+ +.. . ... -++. + ...|-..++...|..+++++++.+++--|+
T Consensus 28 lp~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~ 107 (407)
T COG3844 28 LPGGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLF 107 (407)
T ss_pred CCCCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHH
Confidence 46778999887654433232222221 111 0 011 1221 2 345778888889999999999999998888
Q ss_pred HHHHHhcC--CCCeEEEcCCC-Ch----hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 161 LIMRCVLD--PGDKIVDCPPT-FT----MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 161 ~~~~~~~~--pGd~Vlv~~P~-y~----~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
.++.+.++ +|++|++++-. |+ .....+...|.. .+-...+.+++++++++ .++.+|++++.|.-||+
T Consensus 108 k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~-----~~~~~~~~P~~~~~~~~-dd~AvV~L~~V~y~TGq 181 (407)
T COG3844 108 KVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG-----YDLEGVIAPRALEEAIT-DDVAVVLLSHVNYKTGQ 181 (407)
T ss_pred HHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc-----ccceeeeChHHHHHhhc-cceEEEEeccccccccc
Confidence 88887754 58888887644 32 222333333322 22334567889999998 78999999999999999
Q ss_pred CCChHHHHHHHhhhhC
Q 025730 234 FSWTSSWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~i~~i~~~~~ 249 (249)
.+ +...+..++++|+
T Consensus 182 l~-dm~aiT~~AH~~g 196 (407)
T COG3844 182 LL-DMRAITALAHQHG 196 (407)
T ss_pred ee-eHHHHHHHHHhcC
Confidence 95 7777778888775
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00051 Score=63.09 Aligned_cols=149 Identities=19% Similarity=0.169 Sum_probs=84.6
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCC----cC---hHH----HHHHHHHHcCCCCCCEEE---eCCHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPD----PE---SRR----LRAALAKDSGLESDHILV---GCGADEL 158 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~----~g---~~~----lr~~la~~~~~~~~~I~v---t~Ga~~~ 158 (249)
.-|.|-..||.. ++.+++++.. +. +..+||. .| .++ ..+.+.+.|++++++..+ ..+++.+
T Consensus 21 ~~l~LiaSEN~~--Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~A 98 (399)
T PF00464_consen 21 STLNLIASENYM--SPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQA 98 (399)
T ss_dssp HSEE-CTT-------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHH
T ss_pred cCccccCccccc--CHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHH
Confidence 348888888864 5788888875 22 2222332 12 222 344555667887654322 4566779
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHH---H--H-----HHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCC
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEF---D--A-----AVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSP 227 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~---~--~-----~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~P 227 (249)
...++.++++|||+|+..++....+.. . . .....+.+.++.+ +++.+|.|++++.+++.++|+|++.--
T Consensus 99 n~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S 178 (399)
T PF00464_consen 99 NLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGAS 178 (399)
T ss_dssp HHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-S
T ss_pred HHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECch
Confidence 999999999999999998887753321 0 0 1133567777765 678999999999998889999996543
Q ss_pred CCccccCCChHHHHHHHhhhhC
Q 025730 228 NNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 228 nNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.|- . .+-+.+.+||++.|
T Consensus 179 ~y~~--~-~d~~~~reIad~vg 197 (399)
T PF00464_consen 179 SYPR--P-IDFKRFREIADEVG 197 (399)
T ss_dssp STSS------HHHHHHHHHHTT
T ss_pred hccC--c-cCHHHHHHHHHhcC
Confidence 3321 1 23466788888754
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0036 Score=57.63 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=91.1
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC-CCCCCcChHHHHHHHHHHcC-C-CCCCEEEeCCHHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP-YIYPDPESRRLRAALAKDSG-L-ESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~-~~Yp~~g~~~lr~~la~~~~-~-~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
.+...+|+..+ ...++ ..|.+.+++.+ +... +.+. ....++...+++++. . ..+.++++++++++.+.+++.
T Consensus 34 dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ 112 (395)
T PRK03715 34 NGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSP-AFYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKL 112 (395)
T ss_pred CCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHH
Confidence 35677888764 22333 35788888765 3221 1111 122345555666553 1 246899999999999999886
Q ss_pred hc------CCC-CeEEEcCCCChhHHHHH-HHCCCEEE---EecCCCCC----CCCHHHHHHhhccCCceEEEEcCCCCc
Q 025730 166 VL------DPG-DKIVDCPPTFTMYEFDA-AVNGAAVV---KVPRKSDF----SLNVELIADAVEREKPKCIFLTSPNNP 230 (249)
Q Consensus 166 ~~------~pG-d~Vlv~~P~y~~~~~~~-~~~G~~v~---~v~~~~~~----~id~e~l~~~i~~~~~k~i~l~~PnNP 230 (249)
.. ++| .+|+..+..|......+ ...|.... ..|...++ ..|++.+++.++ .++.+|++...++.
T Consensus 113 ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~aavi~Epv~~~ 191 (395)
T PRK03715 113 ARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLIT-DKTVAVMLEPVQGE 191 (395)
T ss_pred HHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcC-CCceEEEEeCCcCC
Confidence 63 133 67888888886543332 22332211 11111111 247899999887 56777776655555
Q ss_pred cccCCChH---HHHHHHhhhhC
Q 025730 231 DGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~~---e~i~~i~~~~~ 249 (249)
.|...++. +.+..+|++||
T Consensus 192 gG~~~~~~~~l~~l~~l~~~~~ 213 (395)
T PRK03715 192 GGVIPATREFMQQLRALTKQHG 213 (395)
T ss_pred CCCccCCHHHHHHHHHHHHHcC
Confidence 66664433 55778899886
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0044 Score=54.45 Aligned_cols=113 Identities=20% Similarity=0.238 Sum_probs=81.0
Q ss_pred HHHHHHHhc---------cCCCCCCCcChHHHHHHHHHHcCCCCC--CEEEeCCHHHHHHHHHHHhcCCCCeEEEc-CCC
Q 025730 112 EVREALGQL---------KFPYIYPDPESRRLRAALAKDSGLESD--HILVGCGADELIDLIMRCVLDPGDKIVDC-PPT 179 (249)
Q Consensus 112 ~v~~al~~~---------~~~~~Yp~~g~~~lr~~la~~~~~~~~--~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~-~P~ 179 (249)
.|+++++.- ..+++|-|-|.+.|.+-.|+.+|.+.. ..-+.+ +|++|.+++..+++|||+.+.. .--
T Consensus 39 kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf~aE~a~VRpq~is-GTHAI~~aLfg~LRpgDell~i~G~P 117 (416)
T COG4100 39 KVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVFGAEAALVRPQIIS-GTHAIACALFGILRPGDELLYITGSP 117 (416)
T ss_pred HHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHhccccceeeeeeec-chhHHHHHHHhccCCCCeEEEecCCc
Confidence 566777641 112445566788899999999985433 122334 5889999999999999998843 223
Q ss_pred ChhHHHHH----------HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcC
Q 025730 180 FTMYEFDA----------AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTS 226 (249)
Q Consensus 180 y~~~~~~~----------~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~ 226 (249)
|....... ..+|.+...+|+..++.+|.+.+.++++ .++|+|.|..
T Consensus 118 YDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~-~~tkli~IQR 173 (416)
T COG4100 118 YDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAIS-DRTKLIGIQR 173 (416)
T ss_pred chhHHHHhccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcC-ccceEEEEEe
Confidence 44444333 2366788888988889999999999998 7999999863
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0017 Score=59.20 Aligned_cols=138 Identities=14% Similarity=0.036 Sum_probs=91.4
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-c-c----------CCCCCCCc--ChHHHHHHHHHHcCCCCC-C-EEEeCCHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-L-K----------FPYIYPDP--ESRRLRAALAKDSGLESD-H-ILVGCGADELI 159 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~-~----------~~~~Yp~~--g~~~lr~~la~~~~~~~~-~-I~vt~Ga~~~l 159 (249)
.++.|.. -|...|+.|++++.. + . ..++-++- -..+.++.|.++++++.+ + +++..|++.++
T Consensus 7 ~~~~f~p--GP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ 84 (365)
T PLN02452 7 RVFNFSA--GPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQF 84 (365)
T ss_pred ceEeeeC--CCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHH
Confidence 3444543 355577889888764 2 1 22332321 256788888888998443 3 55678899999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCh--hHHHHHHHCCCEEEEecC-CCC--CCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 160 DLIMRCVLDPGDKIVDCPPTFT--MYEFDAAVNGAAVVKVPR-KSD--FSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vlv~~P~y~--~~~~~~~~~G~~v~~v~~-~~~--~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
+.++..++.+||++++..-+.. .+...++.+|...+.... ..+ ..+++++++. . .+.+.|++|+-...||+.
T Consensus 85 ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~~hnETstGv~ 161 (365)
T PLN02452 85 AAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWEL--T-PDAKFVHICANETIHGVE 161 (365)
T ss_pred HHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcCC--C-CCCcEEEECCCCCCCcEe
Confidence 9999999999999887776653 466677778864444421 111 2467777532 2 568899999999999996
Q ss_pred CChH
Q 025730 235 SWTS 238 (249)
Q Consensus 235 ~~~~ 238 (249)
+++.
T Consensus 162 ~~~~ 165 (365)
T PLN02452 162 FKDY 165 (365)
T ss_pred cCcc
Confidence 5543
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0037 Score=58.93 Aligned_cols=149 Identities=15% Similarity=0.054 Sum_probs=95.4
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-c--cCCCCCC------Cc-ChHH----HHHHHHHHcCCCCCCEEEeCCHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-L--KFPYIYP------DP-ESRR----LRAALAKDSGLESDHILVGCGADELID 160 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~--~~~~~Yp------~~-g~~~----lr~~la~~~~~~~~~I~vt~Ga~~~l~ 160 (249)
.+.|.|=..||.. ++.+++++.. + .+..+|| .. ...+ ..+...+.|+.+--+|-.-+| +.+..
T Consensus 49 ~~~l~LiasEN~~--s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg-~~An~ 125 (493)
T PRK13580 49 RSSLKLIASENYS--SLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSG-ADANL 125 (493)
T ss_pred hcCceEecccccC--CHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCc-HHHHH
Confidence 4458888888864 5788888875 2 1222332 11 1222 334444557766666666555 55777
Q ss_pred HHHHHhcCC-------------------------------CCeEEEcCCCChhHHH---HHHHCC--CEEEEecCC-CCC
Q 025730 161 LIMRCVLDP-------------------------------GDKIVDCPPTFTMYEF---DAAVNG--AAVVKVPRK-SDF 203 (249)
Q Consensus 161 ~~~~~~~~p-------------------------------Gd~Vlv~~P~y~~~~~---~~~~~G--~~v~~v~~~-~~~ 203 (249)
.++.++++| ||+|+..++..+.+.. .....| .+++.++.+ +++
T Consensus 126 ~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g 205 (493)
T PRK13580 126 VAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTG 205 (493)
T ss_pred HHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccC
Confidence 888888876 8999988776642211 111122 445555544 457
Q ss_pred CCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 204 SLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 204 ~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+|.+++++.++ .+++.|++++.+|-.+ . .+.+.+.+||+++|
T Consensus 206 ~iD~d~l~~~~~-~~~plvii~g~S~~~~-~-~dl~~i~eia~~~g 248 (493)
T PRK13580 206 LLDYDEIAALAR-EFKPLILVAGYSAYPR-R-VNFAKLREIADEVG 248 (493)
T ss_pred ccCHHHHHHHHh-hcCCEEEEeCccccCC-C-cCHHHHHHHHHHcC
Confidence 899999999998 5677777888877644 5 36777888898875
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0033 Score=56.94 Aligned_cols=147 Identities=21% Similarity=0.205 Sum_probs=93.6
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-c--cCCCCCCC------cC-hHH----HHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-L--KFPYIYPD------PE-SRR----LRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~--~~~~~Yp~------~g-~~~----lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
+.|.|=..||- .++.|++++.. + .+..+||. .. .++ ..+...++||.+--+|-..+|+ ++...
T Consensus 27 ~~ieLIASEN~--~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs-~AN~a 103 (413)
T COG0112 27 EHIELIASENF--TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGS-QANQA 103 (413)
T ss_pred hceeeeecccc--CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCch-HHHHH
Confidence 45788788885 46888888865 2 22233432 11 122 2344445678776777776765 57778
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHH---HHCC--CEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDA---AVNG--AAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~---~~~G--~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
++.++++|||+|+-.+-.+..+.... ...| .+++.++.+ +++.+|.|++++.+.+.++|+|+.-.--.|- .
T Consensus 104 v~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~SaY~r--~- 180 (413)
T COG0112 104 VYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAYSR--P- 180 (413)
T ss_pred HHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECcccccc--c-
Confidence 88899999999998877776443322 1123 345555655 5688999999999988999999853221111 1
Q ss_pred ChHHHHHHHhhhh
Q 025730 236 WTSSWIWGISSEH 248 (249)
Q Consensus 236 ~~~e~i~~i~~~~ 248 (249)
-+-+...+||++.
T Consensus 181 id~~~~reIad~V 193 (413)
T COG0112 181 IDFKRFREIADEV 193 (413)
T ss_pred cCHHHHHHHHHHh
Confidence 1235566777664
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0063 Score=56.38 Aligned_cols=157 Identities=12% Similarity=0.215 Sum_probs=91.8
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC---C--CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP---Y--IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~---~--~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...+|+..+ ...++ ..|.+.+++.+ +... . .|+.....+|.+.|++.+.-..+.++++++++++.+.++
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~ 119 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVAL 119 (423)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence 45667888766 33333 34777777765 3321 1 234333456777777776433468999999999999988
Q ss_pred HHhcC-------CC-CeEEEcCCCChhHHHHHHH-CCC------------EEEEecCCCC--CCCCHHHHHHhhcc--CC
Q 025730 164 RCVLD-------PG-DKIVDCPPTFTMYEFDAAV-NGA------------AVVKVPRKSD--FSLNVELIADAVER--EK 218 (249)
Q Consensus 164 ~~~~~-------pG-d~Vlv~~P~y~~~~~~~~~-~G~------------~v~~v~~~~~--~~id~e~l~~~i~~--~~ 218 (249)
+.... +| .+|+...-.|......+.. .+- .+..++...+ ...+++.+++.+.+ .+
T Consensus 120 klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~ 199 (423)
T PRK05964 120 KMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGE 199 (423)
T ss_pred HHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCc
Confidence 85421 33 5788888888643322221 111 1122332111 11227888887752 34
Q ss_pred ceEEEEcC-CCCccccCCChH---HHHHHHhhhhC
Q 025730 219 PKCIFLTS-PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 219 ~k~i~l~~-PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+.+|++.- .+...|...++. +.+..+|++||
T Consensus 200 iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g 234 (423)
T PRK05964 200 IAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHG 234 (423)
T ss_pred EEEEEEecccccCCCcccCCHHHHHHHHHHHHHcC
Confidence 55666543 367778776554 44788999886
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.012 Score=54.42 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=92.0
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCCCC----CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFPYI----YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~~~----Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..+. ..++ ..|.+.+++.+ +..... |......+|-+.|++..+. .+.++++++++++.+.+++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~-~~~v~f~~sGseA~e~Alk 116 (408)
T PRK04612 38 QGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRF-AEKVFLCNSGTEANEAAIK 116 (408)
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCC-CCEEEEcCchHHHHHHHHH
Confidence 456778887663 3333 45777777765 332111 2222234566666665432 2689999999999999887
Q ss_pred HhcC--------CC-CeEEEcCCCChhHHHHHH-HCCCEEEE---ecCCCC----CCCCHHHHHHhhccCCceEEEEcCC
Q 025730 165 CVLD--------PG-DKIVDCPPTFTMYEFDAA-VNGAAVVK---VPRKSD----FSLNVELIADAVEREKPKCIFLTSP 227 (249)
Q Consensus 165 ~~~~--------pG-d~Vlv~~P~y~~~~~~~~-~~G~~v~~---v~~~~~----~~id~e~l~~~i~~~~~k~i~l~~P 227 (249)
.... ++ .+|+....+|......+. ..|..... -+...+ ...|++.+++.++ .+..+.+|..|
T Consensus 117 lAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~aavi~eP 195 (408)
T PRK04612 117 LVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMA-GGDVAAVMLEP 195 (408)
T ss_pred HHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhC-CCCEEEEEECC
Confidence 5321 22 468888888864433222 22211100 010011 1127899999886 45566777889
Q ss_pred CCccccCCChH----HHHHHHhhhhC
Q 025730 228 NNPDGRFSWTS----SWIWGISSEHN 249 (249)
Q Consensus 228 nNPTG~~~~~~----e~i~~i~~~~~ 249 (249)
.+++|.+++.. +.+.++|++||
T Consensus 196 ~~~~gg~~~~~~~~l~~l~~l~~~~g 221 (408)
T PRK04612 196 IQGEGGVMPAAPGFLARVRALCDQHD 221 (408)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 98888776643 45788999886
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.01 Score=55.50 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=90.5
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCCCCC-----CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFPYIY-----PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~~~Y-----p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
++...||+..+ ...++ ..+.+.+++.+ +.....+ ..+...+|-+.|++..+..-+.++++++++|+.+.++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~Al 118 (443)
T PRK08360 39 EGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAI 118 (443)
T ss_pred CCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHH
Confidence 45667888776 33343 45777777765 3322111 1222355666676666543368999999999999998
Q ss_pred HHhc--CCCCeEEEcCCCChhHHH-HHHHCCC------------EEEEecCCCC----CC--------CCHHHHHHhhcc
Q 025730 164 RCVL--DPGDKIVDCPPTFTMYEF-DAAVNGA------------AVVKVPRKSD----FS--------LNVELIADAVER 216 (249)
Q Consensus 164 ~~~~--~pGd~Vlv~~P~y~~~~~-~~~~~G~------------~v~~v~~~~~----~~--------id~e~l~~~i~~ 216 (249)
+... ....+|+...-.|..... .....|. .+..++..+. +. -+++.+++.+++
T Consensus 119 klAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (443)
T PRK08360 119 KFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEG 198 (443)
T ss_pred HHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHh
Confidence 8532 223577777766653321 1111221 1233332111 10 124556666642
Q ss_pred ----CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 217 ----EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 217 ----~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.++++|++.--+||+|.++++. +.+.++|++||
T Consensus 199 ~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g 238 (443)
T PRK08360 199 EVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHG 238 (443)
T ss_pred ccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 4677887663359999988755 44777899886
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0022 Score=59.34 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=81.7
Q ss_pred CCCCCCCCCHHHHHHHH-hccCCCCC-C---C--cC----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh---c
Q 025730 102 ANENPYGPPPEVREALG-QLKFPYIY-P---D--PE----SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV---L 167 (249)
Q Consensus 102 ~~~~~~~~p~~v~~al~-~~~~~~~Y-p---~--~g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~---~ 167 (249)
.|.-..-.|+.+.+.+. +-.+...| | + .| .-++...+++..|++.-+.-+-.|++..-+.+.++. -
T Consensus 72 ~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~ 151 (429)
T PF02347_consen 72 AGSYTHYVPAVIDRNILSRPEFYTAYTPYQPEISQGRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATK 151 (429)
T ss_dssp CTTT-----HHHHH-HHCCHHCCCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHT
T ss_pred ccccCceeChhhcCccccChhhhccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcc
Confidence 33333445566666344 33333334 3 2 23 357888999999987655566567766655554433 2
Q ss_pred CCCCeEEEcCCCChhHHHHH----HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHH
Q 025730 168 DPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWG 243 (249)
Q Consensus 168 ~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~ 243 (249)
+..++|+++.-.|+.+.... ...|.+++.++.+++...| + .++.+|++.+||. .|.+- +.+.+.+
T Consensus 152 ~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~-~~~a~v~vq~Pn~-~G~~e-d~~~i~~ 220 (429)
T PF02347_consen 152 RKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------D-DDTAAVMVQNPNT-FGVFE-DIKEIAD 220 (429)
T ss_dssp T---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------S-TTEEEEEEESS-T-TSB---THHHHHH
T ss_pred cCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------c-cCeEEEEeecCCC-CceEe-eHHHHHH
Confidence 33469999999998777643 4489999999976665555 3 7899999999995 78884 4777888
Q ss_pred HhhhhC
Q 025730 244 ISSEHN 249 (249)
Q Consensus 244 i~~~~~ 249 (249)
+++++|
T Consensus 221 ~~h~~g 226 (429)
T PF02347_consen 221 IAHAAG 226 (429)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 888765
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0092 Score=54.35 Aligned_cols=133 Identities=13% Similarity=0.023 Sum_probs=83.4
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-c-c----------CCCCCCCc--ChHHHHHHHHHHcCCCC-CCEE-EeCCHHHHHHH
Q 025730 98 VKIDANENPYGPPPEVREALGQ-L-K----------FPYIYPDP--ESRRLRAALAKDSGLES-DHIL-VGCGADELIDL 161 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~-~----------~~~~Yp~~--g~~~lr~~la~~~~~~~-~~I~-vt~Ga~~~l~~ 161 (249)
+.|+.| |-..|++|++++++ + . ..+|-+.- -..+.++.+.+.++++. .+|+ +..|++.++..
T Consensus 6 ~nF~aG--Pa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea 83 (364)
T PRK12462 6 LNFSGG--PGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSM 83 (364)
T ss_pred ceecCC--CcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHH
Confidence 344443 33456788877763 2 1 11222221 24667778888889844 3555 56669999999
Q ss_pred HHHHhcCCCCeEE--EcCCCCh-hHHHHHHHCCCEEEEecC--C--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 162 IMRCVLDPGDKIV--DCPPTFT-MYEFDAAVNGAAVVKVPR--K--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 162 ~~~~~~~pGd~Vl--v~~P~y~-~~~~~~~~~G~~v~~v~~--~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
+...++.+||+++ +.+-.|. -+...++.+| ++..+.. . ....++++++ .+. .+.+.|++|+-...||+.
T Consensus 84 ~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~-~d~~~v~~t~NETstGv~ 159 (364)
T PRK12462 84 IPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWD-ARAPFRHYVSNETVEGLQ 159 (364)
T ss_pred HHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccC-CCCcEEEEccCCCCceEe
Confidence 9999999999665 5555565 4566666677 5444431 1 1234556665 222 467889999888899998
Q ss_pred CC
Q 025730 235 SW 236 (249)
Q Consensus 235 ~~ 236 (249)
++
T Consensus 160 ~~ 161 (364)
T PRK12462 160 FP 161 (364)
T ss_pred cC
Confidence 74
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.019 Score=52.54 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=90.0
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..+. ..++ ..|.+.+++.+ +... ..|......+|-+.|++..+ .+.|+++++++++.+.+++
T Consensus 13 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~f~~sGseA~e~Alk 90 (382)
T PLN00144 13 EGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSF--ADRVFFCNSGTEANEAAIK 90 (382)
T ss_pred CCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCC--CCeEEEeCCcHHHHHHHHH
Confidence 456678887663 2232 45777777765 3321 11222234556666666554 4689999999999999887
Q ss_pred Hhc---C------C------CCeEEEcCCCChhHHHHHHH-CCCE------------EEEecCCCCCCCCHHHHHHhhcc
Q 025730 165 CVL---D------P------GDKIVDCPPTFTMYEFDAAV-NGAA------------VVKVPRKSDFSLNVELIADAVER 216 (249)
Q Consensus 165 ~~~---~------p------Gd~Vlv~~P~y~~~~~~~~~-~G~~------------v~~v~~~~~~~id~e~l~~~i~~ 216 (249)
... . + ..+|+...-+|......+.. .+-. +..++. -|++.+++.+..
T Consensus 91 lAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~ 165 (382)
T PLN00144 91 FARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY-----GNLEAARKLIQK 165 (382)
T ss_pred HHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC-----CCHHHHHHhcCC
Confidence 542 1 0 24788888888654433332 2211 112221 278999988864
Q ss_pred CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 217 EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 217 ~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.++++|++.--+||.|....+. +.+.++|++||
T Consensus 166 ~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g 201 (382)
T PLN00144 166 GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAG 201 (382)
T ss_pred CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 5677777663378855543222 45788999886
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0035 Score=57.79 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=86.6
Q ss_pred HHHHHHHHHHcCCCCCCE-EEeCCHHHHHHHHHHHhc----C-CC---CeEEEcCCCChhHHHHHHHCCCEEEEecCC-C
Q 025730 132 RRLRAALAKDSGLESDHI-LVGCGADELIDLIMRCVL----D-PG---DKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-S 201 (249)
Q Consensus 132 ~~lr~~la~~~~~~~~~I-~vt~Ga~~~l~~~~~~~~----~-pG---d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~ 201 (249)
.+....++.+++-+++.+ ..|.|+++++.+.....- . .| -.++++.-.+..+...++.++.++..|+.+ .
T Consensus 123 ~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~ 202 (491)
T KOG1383|consen 123 AECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLDEG 202 (491)
T ss_pred HHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeecccc
Confidence 445566666777655432 368899999666554431 1 12 356666777778999999999999999976 7
Q ss_pred CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh
Q 025730 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 202 ~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
+|.+|+.++.+.++ +++.+|+..-|+.|+|.. .+.+.+.++..+
T Consensus 203 ~~~~D~~k~~~~i~-eNti~lv~~~~~~p~G~~-e~ve~l~~l~~e 246 (491)
T KOG1383|consen 203 DYRVDPGKVVRMID-ENTIMLVGSLPNFPTGEI-EDVEKLADLLLE 246 (491)
T ss_pred ceEecHHHHHHHhc-cceEEEEEEcCCCCccch-hhHHHHHHHHHH
Confidence 89999999999998 799999999999999999 777777666655
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.026 Score=52.36 Aligned_cols=155 Identities=10% Similarity=0.080 Sum_probs=81.0
Q ss_pred CCCCeeeccCCCCCCC---CCHHHHHHHHh-ccCC-CC-CC---CcChHHHHHHHHHHcCCCC-CCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANENPYG---PPPEVREALGQ-LKFP-YI-YP---DPESRRLRAALAKDSGLES-DHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~---~p~~v~~al~~-~~~~-~~-Yp---~~g~~~lr~~la~~~~~~~-~~I~vt~Ga~~~l~~~ 162 (249)
.++..+|+..+..... .++.+.+++.+ +... +. ++ .+...+|-+.+++..+... +.++++++++++++.+
T Consensus 39 dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~A 118 (425)
T PRK08088 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENA 118 (425)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHH
Confidence 4566788877643332 36777777765 3221 11 12 2223345555555555332 3566666666766655
Q ss_pred HHHh---cCCCCeEEEcCCCChhHHHHHHHCCCEE--------------EE--ecCCCCCCCC----HHHHHHhhc----
Q 025730 163 MRCV---LDPGDKIVDCPPTFTMYEFDAAVNGAAV--------------VK--VPRKSDFSLN----VELIADAVE---- 215 (249)
Q Consensus 163 ~~~~---~~pGd~Vlv~~P~y~~~~~~~~~~G~~v--------------~~--v~~~~~~~id----~e~l~~~i~---- 215 (249)
++.. .++ .+|+...++|......+...+... .. +|.+.. +.+ ++.+++.++
T Consensus 119 lklar~~~~r-~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~l~~~l~~~~~ 196 (425)
T PRK08088 119 VKIARAATKR-SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH-GVSEDDAIASIERIFKNDAA 196 (425)
T ss_pred HHHHHHHhCC-CeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCcccc-CccHHHHHHHHHHHHHhccC
Confidence 5432 333 567777999976554444332221 11 121111 122 456777774
Q ss_pred cCCceEEEEc-CCCCccccCCChH--HHHHHHhhhhC
Q 025730 216 REKPKCIFLT-SPNNPDGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 216 ~~~~k~i~l~-~PnNPTG~~~~~~--e~i~~i~~~~~ 249 (249)
..+..+|++. ..+|+.+...+++ +.+.++|++||
T Consensus 197 ~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~ 233 (425)
T PRK08088 197 PEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHG 233 (425)
T ss_pred CCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 2345666644 2367755554554 44788898875
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.036 Score=51.23 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=95.2
Q ss_pred CCCCeeeccCCCCCC---CCCHHHHHHHHh-ccCCCCCCCc--ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANENPY---GPPPEVREALGQ-LKFPYIYPDP--ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~---~~p~~v~~al~~-~~~~~~Yp~~--g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
++...||+-.+--+. -.+|.|.+++++ +..+..|..+ ..-++-+.+.+.++. .+.|-++|++||+...+++..
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~fg~Pte~Ei~~Aell~~~~p~-~e~vrfvnSGTEAtmsAiRlA 129 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGAPTELEVELAELLIERVPS-IEKVRFVNSGTEATMSAIRLA 129 (432)
T ss_pred CCCEeeehhccCcccccCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCc-ccEEEEecchhHHHHHHHHHH
Confidence 345566766554443 246789999987 6666777433 234456666666652 278999999999999887742
Q ss_pred --cCCCCeEEEcCCCChhHHHHHHH-CC--CEEEE------ecCC--CC---C-CCCHHHHHHhhccC--CceEEEEc-C
Q 025730 167 --LDPGDKIVDCPPTFTMYEFDAAV-NG--AAVVK------VPRK--SD---F-SLNVELIADAVERE--KPKCIFLT-S 226 (249)
Q Consensus 167 --~~pGd~Vlv~~P~y~~~~~~~~~-~G--~~v~~------v~~~--~~---~-~id~e~l~~~i~~~--~~k~i~l~-~ 226 (249)
...-|+|+..+-+|......+.. .| ..... +|.+ .+ . -=|++.+++++++. ++.+|++. -
T Consensus 130 Ra~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv 209 (432)
T COG0001 130 RAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPV 209 (432)
T ss_pred HHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccc
Confidence 12238999999999754444333 22 21111 1110 00 0 12789999998754 55566544 2
Q ss_pred CCCccccCCChHH---HHHHHhhhhC
Q 025730 227 PNNPDGRFSWTSS---WIWGISSEHN 249 (249)
Q Consensus 227 PnNPTG~~~~~~e---~i~~i~~~~~ 249 (249)
+.| -|.+.+.++ .+.+||++||
T Consensus 210 ~gn-~g~i~p~~~Fl~~Lr~lt~e~G 234 (432)
T COG0001 210 AGN-MGVVPPEPGFLEGLRELTEEHG 234 (432)
T ss_pred cCC-CCCCCCCHHHHHHHHHHHHHcC
Confidence 345 788766664 4788999886
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.018 Score=58.29 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=94.1
Q ss_pred ccCCCCCCCCCHHHHHHHHh-ccCCCCC-C---C--cC----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-c
Q 025730 100 IDANENPYGPPPEVREALGQ-LKFPYIY-P---D--PE----SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-L 167 (249)
Q Consensus 100 L~~~~~~~~~p~~v~~al~~-~~~~~~Y-p---~--~g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~ 167 (249)
++.|--+.-.|+.+.+.+.+ -.+...| | + +| .-+++..++++.|++..|.-+-.+++.+.+.++++. .
T Consensus 69 ig~G~y~~~~p~~i~r~v~~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~ 148 (939)
T TIGR00461 69 IGMGYYGTILPPVIQRNLLENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNV 148 (939)
T ss_pred CCCCcCCCcCChHHHHHHHhCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHh
Confidence 34555555567888766654 3322334 3 2 23 357888999999999888888889888888777653 2
Q ss_pred --CCCCeEEEcCCCChhHHH----HHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHH
Q 025730 168 --DPGDKIVDCPPTFTMYEF----DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWI 241 (249)
Q Consensus 168 --~pGd~Vlv~~P~y~~~~~----~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i 241 (249)
+++++|++++-.|+.+.. .++..|.+++.++ ++++++.+ ++.++++.+||. +|.+. +.+.+
T Consensus 149 ~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~--------~~~l~~~~---~~~~v~~q~Pn~-~G~ie-d~~~i 215 (939)
T TIGR00461 149 SKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD--------CSDIKKAV---DVFGCLLQYPAT-DGSIL-DYKQL 215 (939)
T ss_pred hcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc--------HHHHhhcC---CEEEEEEECCCC-CeEEe-cHHHH
Confidence 234899999999986663 4456899988874 34565544 467888889985 89985 55666
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++++++|
T Consensus 216 ~~~~h~~g 223 (939)
T TIGR00461 216 IDALHSHK 223 (939)
T ss_pred HHHHHHcC
Confidence 67777654
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.04 Score=51.10 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=91.2
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCCC--C---CCCcChHHHHHHHHHHcCC-CCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFPY--I---YPDPESRRLRAALAKDSGL-ESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~~--~---Yp~~g~~~lr~~la~~~~~-~~~~I~vt~Ga~~~l~~~ 162 (249)
+++..||+..+- ..++ ..|.+.+++.+ +.... . ++.+...+|-+.|++.... ..+.++++++++++.+.+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~A 117 (421)
T PRK09792 38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENA 117 (421)
T ss_pred CCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHH
Confidence 456678886652 2232 45677777765 33211 1 1222234666677766542 235789999999999988
Q ss_pred HHHhc-CCC-CeEEEcCCCChhHHHHH-HHCCC-------------EEEEecCCCC-CCC----CHHHHHHhhcc----C
Q 025730 163 MRCVL-DPG-DKIVDCPPTFTMYEFDA-AVNGA-------------AVVKVPRKSD-FSL----NVELIADAVER----E 217 (249)
Q Consensus 163 ~~~~~-~pG-d~Vlv~~P~y~~~~~~~-~~~G~-------------~v~~v~~~~~-~~i----d~e~l~~~i~~----~ 217 (249)
++... -.| .+|+...-+|......+ ...|. .+..+|...+ .++ +++.+++.+++ .
T Consensus 118 lklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (421)
T PRK09792 118 VKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAK 197 (421)
T ss_pred HHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCC
Confidence 87542 123 57888888876433222 11121 1233332111 112 34777777752 4
Q ss_pred CceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 218 KPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 218 ~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++.+|++.-.++++|..+.+. +.+.++|++||
T Consensus 198 ~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g 232 (421)
T PRK09792 198 QVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHG 232 (421)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 567887765589999876453 45788899886
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.035 Score=52.21 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=90.9
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC-----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP-----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~-----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..+- ..++ ..|.+.+++.+ +... ..|+.+...+|-+.|++...-..+.++++++++++.+.++
T Consensus 50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~Al 129 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAW 129 (460)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHH
Confidence 356678887762 3333 45778877765 3321 1233333456777777765433468999999999999888
Q ss_pred HHhcC-------C-CCeEEEcCCCChhHHHHHHH-CCC------------EEEEecCCCC-----CCCC--------HHH
Q 025730 164 RCVLD-------P-GDKIVDCPPTFTMYEFDAAV-NGA------------AVVKVPRKSD-----FSLN--------VEL 209 (249)
Q Consensus 164 ~~~~~-------p-Gd~Vlv~~P~y~~~~~~~~~-~G~------------~v~~v~~~~~-----~~id--------~e~ 209 (249)
+.... + ..+|+...-+|......+.. .|. .+..+|.... +.-+ ++.
T Consensus 130 klAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (460)
T PRK06541 130 KLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADR 209 (460)
T ss_pred HHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHH
Confidence 74321 1 36788887777543322211 111 1233332111 1112 366
Q ss_pred HHHhhcc--CCceEEEEcCC-CCccccCCChH---HHHHHHhhhhC
Q 025730 210 IADAVER--EKPKCIFLTSP-NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 210 l~~~i~~--~~~k~i~l~~P-nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+++.+++ .+..+.+|.-| .++.|.+.++. +.+.++|++||
T Consensus 210 l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g 255 (460)
T PRK06541 210 IEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYD 255 (460)
T ss_pred HHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 7777752 23445555666 88899886644 44788999886
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.094 Score=48.20 Aligned_cols=144 Identities=12% Similarity=0.062 Sum_probs=97.7
Q ss_pred eccCCCCCCCCCHHHHHHHH-hccCCCCC-C---C--cC----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-
Q 025730 99 KIDANENPYGPPPEVREALG-QLKFPYIY-P---D--PE----SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV- 166 (249)
Q Consensus 99 ~L~~~~~~~~~p~~v~~al~-~~~~~~~Y-p---~--~g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~- 166 (249)
-++.|.-+.-.|+.+.+.+. +-.+...| | + .| .-++...++++.|++-.|--+--|+|.+-+.+.++.
T Consensus 79 fiG~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r 158 (450)
T COG0403 79 FIGAGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKR 158 (450)
T ss_pred hccCcccCCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHH
Confidence 45556666667777774544 44443444 3 2 23 346778888888987777666677776666655543
Q ss_pred --cCCCCeEEEcCCCChhHHHHHHH----CCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH
Q 025730 167 --LDPGDKIVDCPPTFTMYEFDAAV----NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 167 --~~pGd~Vlv~~P~y~~~~~~~~~----~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~ 240 (249)
-++..+++++.-.|+.+....+. .|.+++.++.+ |+++++++ ++.++-++++.+|| -.|....+.+.
T Consensus 159 ~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~-~~~~~~gv~vQyP~-~~G~~~~d~~~ 231 (450)
T COG0403 159 VTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESA-DDGDVFGVLVQYPN-TFGIVEEDLRA 231 (450)
T ss_pred hhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhc-cccCeEEEEEecCC-CCCccchhHHH
Confidence 22358999999999866655444 67788877764 77888888 54578899999998 47866566677
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+..+++++|
T Consensus 232 l~~~~h~~~ 240 (450)
T COG0403 232 LIEAAHSAG 240 (450)
T ss_pred HHHHHhhcC
Confidence 777777654
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.072 Score=49.78 Aligned_cols=156 Identities=11% Similarity=0.126 Sum_probs=85.8
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCCCCC-----CCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFPYIY-----PDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~~~Y-----p~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..+- ..++ ..+.+.+++.+ +.....+ +.....+|-+.|++.+... .+.++++++++++.+.+
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~A 133 (443)
T PRK06058 54 DGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENA 133 (443)
T ss_pred CCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHH
Confidence 456778887763 3332 45778887765 3322111 2222345666666665422 25788889999999998
Q ss_pred HHHh--cCCCCeEEEcCCCChhHHHHHHH-CCC-------------EEEEecCCCCCC------C--------CHHHHHH
Q 025730 163 MRCV--LDPGDKIVDCPPTFTMYEFDAAV-NGA-------------AVVKVPRKSDFS------L--------NVELIAD 212 (249)
Q Consensus 163 ~~~~--~~pGd~Vlv~~P~y~~~~~~~~~-~G~-------------~v~~v~~~~~~~------i--------d~e~l~~ 212 (249)
++.. ....++|+....+|..+...+.. .+. .+..++....+. . .++.+++
T Consensus 134 lklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 213 (443)
T PRK06058 134 VKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEK 213 (443)
T ss_pred HHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHH
Confidence 8832 12237899999999765543322 111 122222111111 1 1233344
Q ss_pred hhccCCceEEEEcCCCCccccCC-ChH---HHHHHHhhhhC
Q 025730 213 AVEREKPKCIFLTSPNNPDGRFS-WTS---SWIWGISSEHN 249 (249)
Q Consensus 213 ~i~~~~~k~i~l~~PnNPTG~~~-~~~---e~i~~i~~~~~ 249 (249)
.+...++.+|+ .-|-+..|-++ ++. +.+.++|++||
T Consensus 214 ~~~~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~g 253 (443)
T PRK06058 214 QVGADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENG 253 (443)
T ss_pred hhCCCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 44324555555 67776665443 333 45788999986
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.066 Score=49.77 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=89.6
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC-----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP-----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~-----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..|- ..++ ..|.+.+++.+ +... ..|..+...+|.+.|++++.-..+.++++++++++.+.++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~Al 120 (433)
T PRK08117 41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGAL 120 (433)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHH
Confidence 456788887763 3333 45678877765 3221 1233334567888888887433468999999999999998
Q ss_pred HHhc--CCCCeEEEcCCCChhHHHHHH-HCCC-------------EEEEecCCCCCC------------CCHHHHHHhhc
Q 025730 164 RCVL--DPGDKIVDCPPTFTMYEFDAA-VNGA-------------AVVKVPRKSDFS------------LNVELIADAVE 215 (249)
Q Consensus 164 ~~~~--~pGd~Vlv~~P~y~~~~~~~~-~~G~-------------~v~~v~~~~~~~------------id~e~l~~~i~ 215 (249)
+... ....+|+...-.|......+. ..+. .+..+|....+. -|++.+++.++
T Consensus 121 klAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 200 (433)
T PRK08117 121 KLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFK 200 (433)
T ss_pred HHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHH
Confidence 8521 123678877777764332221 1110 122333211111 14566666654
Q ss_pred c----CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 216 R----EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 216 ~----~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+ .++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 201 ~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g 241 (433)
T PRK08117 201 HQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHG 241 (433)
T ss_pred hccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcC
Confidence 2 3455555544345567775544 44788999886
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.059 Score=50.42 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=89.6
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccC---CCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKF---PYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~---~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+ ...++ ..|.+.+++.+ +.. ..+| ..+...+|-+.|++.+.-..+.++++++++|+.+.+++
T Consensus 73 dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~Alk 152 (442)
T TIGR03372 73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALK 152 (442)
T ss_pred CCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHH
Confidence 45677888776 44443 45777777765 322 2223 33345567777777664333679999999999999987
Q ss_pred HhcC----CC-CeEEEcCCCChhHHHHHHH-CCCE------------EEEecCCCCCCCCHHHHHHhhcc-----CCceE
Q 025730 165 CVLD----PG-DKIVDCPPTFTMYEFDAAV-NGAA------------VVKVPRKSDFSLNVELIADAVER-----EKPKC 221 (249)
Q Consensus 165 ~~~~----pG-d~Vlv~~P~y~~~~~~~~~-~G~~------------v~~v~~~~~~~id~e~l~~~i~~-----~~~k~ 221 (249)
..-. .| .+|+...-.|......+.. .|-. +..+|. .|.+.+++.++. .++.+
T Consensus 153 lAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-----~d~~~~~~~l~~~~~~~~~vAa 227 (442)
T TIGR03372 153 LAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-----GDIEAMLKALNECKKTGDDVAA 227 (442)
T ss_pred HHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-----CCHHHHHHHHHHHhcCCCcEEE
Confidence 4321 23 6788888888644332222 2211 122221 256777776642 34556
Q ss_pred EEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 222 IFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 222 i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
|++.--..--|...++. +.+.++|++||
T Consensus 228 vIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g 258 (442)
T TIGR03372 228 IILEPIQGEGGVILPPEGYLPAVRALCDEFG 258 (442)
T ss_pred EEEeCccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 65544444457766554 45788999886
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.1 Score=48.48 Aligned_cols=156 Identities=13% Similarity=0.143 Sum_probs=88.0
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC-----CCCCCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP-----YIYPDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~-----~~Yp~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..+. ..++ ..|.+.+++.+ +... ..|+.+...+|-+.|++.+.-. .+.++++++++++.+.+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~A 117 (425)
T PRK07495 38 EGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENA 117 (425)
T ss_pred CCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHH
Confidence 456678887663 2232 45778888765 3321 1234344556777777766422 25899999999999998
Q ss_pred HHHhc--CCCCeEEEcCCCChhHHHHHHH-CCC-------------EEEEecCCC-CCCCC----HHHHHHhhc----cC
Q 025730 163 MRCVL--DPGDKIVDCPPTFTMYEFDAAV-NGA-------------AVVKVPRKS-DFSLN----VELIADAVE----RE 217 (249)
Q Consensus 163 ~~~~~--~pGd~Vlv~~P~y~~~~~~~~~-~G~-------------~v~~v~~~~-~~~id----~e~l~~~i~----~~ 217 (249)
++... ....+|+...-.|......+.. .|. .++.+|... ..+.+ ++.+++.++ ..
T Consensus 118 lklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 197 (425)
T PRK07495 118 VKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQ 197 (425)
T ss_pred HHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCC
Confidence 87432 2236788888877644322211 110 223344221 11222 445566653 23
Q ss_pred CceEEEEc-CCCCccccCC-ChH--HHHHHHhhhhC
Q 025730 218 KPKCIFLT-SPNNPDGRFS-WTS--SWIWGISSEHN 249 (249)
Q Consensus 218 ~~k~i~l~-~PnNPTG~~~-~~~--e~i~~i~~~~~ 249 (249)
++.+|++. ..+| +|... +++ +.+.++|++||
T Consensus 198 ~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g 232 (425)
T PRK07495 198 RVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHG 232 (425)
T ss_pred ceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcC
Confidence 56677655 2356 78553 333 44788899886
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.15 Score=47.46 Aligned_cols=156 Identities=12% Similarity=0.103 Sum_probs=90.9
Q ss_pred CCCCeeeccCCCC--CCC-CCHHHHHHHHh-ccCC--CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANEN--PYG-PPPEVREALGQ-LKFP--YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~~--~~~-~p~~v~~al~~-~~~~--~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.+...||+..+-. .++ ..|.+.+++.+ +... ..++.+...+|-+.|++.+. ..+.+.++++++++.+.+++..
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~l~~~~p-~~~~v~f~~sGseA~e~AlklA 129 (428)
T PRK12389 51 DGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTPTELEIEFAKMLKEAIP-SLEKVRFVNSGTEAVMTTIRVA 129 (428)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCHHHHHHHHHHHH
Confidence 4566788866632 232 34778888765 4322 23344445667777777664 2468999999999999998853
Q ss_pred c--CCCCeEEEcCCCChhHHHHHH-HCCCEEE--------Eec--CCCC----CCCCHHHHHHhhcc--CCceEEEEcCC
Q 025730 167 L--DPGDKIVDCPPTFTMYEFDAA-VNGAAVV--------KVP--RKSD----FSLNVELIADAVER--EKPKCIFLTSP 227 (249)
Q Consensus 167 ~--~pGd~Vlv~~P~y~~~~~~~~-~~G~~v~--------~v~--~~~~----~~id~e~l~~~i~~--~~~k~i~l~~P 227 (249)
. ....+|+...-.|......+. ..|.... .++ ...+ ..-|++.+++.+++ .++.+|++.-.
T Consensus 130 r~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv 209 (428)
T PRK12389 130 RAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPI 209 (428)
T ss_pred HHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCC
Confidence 2 123678888877765433222 2221111 000 0000 01268888888853 24555655544
Q ss_pred CCccccCCChH---HHHHHHhhhhC
Q 025730 228 NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 228 nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
..-.|.+.++. +.+.++|++||
T Consensus 210 ~g~~G~~~p~~~yl~~l~~lc~~~g 234 (428)
T PRK12389 210 VGNFGIVEPKPGFLEAVNELAHEAG 234 (428)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 45567775544 45788999886
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.16 Score=47.68 Aligned_cols=154 Identities=12% Similarity=0.107 Sum_probs=90.9
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC--CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP--YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~--~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
++...||+..+. ..++ ..|.+.+++.+ +..+ ..++.....+|-+.|++.++ .+.+.++++++|+.+.+++..
T Consensus 73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~lAe~l~~~~~--~~~v~F~nSGtEA~e~AlrlA 150 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLPSEDAAWVGEELARRFG--LPYWQVATTATDANRFVLRWA 150 (453)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHHHH
Confidence 456678876553 2232 34778887765 4332 23344445667788887775 578999999999999988753
Q ss_pred c--CCCCeEEEcCCCChhHHHHH--HHCCCEEE------Eec--CC-----CCCCCCHHHHHHhhccCCceEEEEcCCCC
Q 025730 167 L--DPGDKIVDCPPTFTMYEFDA--AVNGAAVV------KVP--RK-----SDFSLNVELIADAVEREKPKCIFLTSPNN 229 (249)
Q Consensus 167 ~--~pGd~Vlv~~P~y~~~~~~~--~~~G~~v~------~v~--~~-----~~~~id~e~l~~~i~~~~~k~i~l~~PnN 229 (249)
- ...++|+...-.|..+.... ...+.+.. .++ .. ..| -|++.+++.+...++.+|++.--..
T Consensus 151 R~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~~vAavi~EPi~g 229 (453)
T PRK07046 151 RAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALADGDVAAVLAEPAMT 229 (453)
T ss_pred HHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCCCCeEEEEECCCCC
Confidence 2 22378888888786542211 11111000 000 00 011 2789999988644566666542233
Q ss_pred ccccCCChH---HHHHHHhhhhC
Q 025730 230 PDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 230 PTG~~~~~~---e~i~~i~~~~~ 249 (249)
-.|.+.++. +.+.++|++||
T Consensus 230 ~~G~~~p~~~fl~~lr~lc~~~g 252 (453)
T PRK07046 230 NIGMVLPEPGFHEALRELTRRYG 252 (453)
T ss_pred CCCCcCCCHHHHHHHHHHHHHhC
Confidence 346665554 55788999986
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.11 Score=48.93 Aligned_cols=157 Identities=12% Similarity=0.080 Sum_probs=89.7
Q ss_pred CCCCeeeccCCCC--CCC-CCHHHHHHHHh-ccCC---C---CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANEN--PYG-PPPEVREALGQ-LKFP---Y---IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~~--~~~-~p~~v~~al~~-~~~~---~---~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
.++..||+..+-- .++ ..|.+.+++.+ ++.. . .|+.....+|-+.|++...-.-+.++++++++++++.+
T Consensus 48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~A 127 (461)
T PRK07482 48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQ 127 (461)
T ss_pred CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHH
Confidence 4567888877732 222 45778888765 3322 1 23333345666777766643346899999999999999
Q ss_pred HHHhc------C-CC-CeEEEcCCCChhHHHHHHH-CC------------CEEEEecCCCCCC-------------CCHH
Q 025730 163 MRCVL------D-PG-DKIVDCPPTFTMYEFDAAV-NG------------AAVVKVPRKSDFS-------------LNVE 208 (249)
Q Consensus 163 ~~~~~------~-pG-d~Vlv~~P~y~~~~~~~~~-~G------------~~v~~v~~~~~~~-------------id~e 208 (249)
++... . +| .+|+...-+|......+.. .| ..+..++....+. .+++
T Consensus 128 lKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 207 (461)
T PRK07482 128 IKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCAD 207 (461)
T ss_pred HHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHH
Confidence 88542 1 22 5788888878653322111 11 0112222111100 1457
Q ss_pred HHHHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 209 LIADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 209 ~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.+++.+.+ .++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 208 ~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~g 254 (461)
T PRK07482 208 ELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYD 254 (461)
T ss_pred HHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhC
Confidence 77777742 3456666553344457775555 45788999986
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.079 Score=49.83 Aligned_cols=157 Identities=14% Similarity=0.136 Sum_probs=90.2
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC---CC-CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP---YI-YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~---~~-Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+ ...++ ..|.+.+++.+ +... .+ ++.+...+|-+.|++.+.-..+.++++++++++.+.+++
T Consensus 80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~Alk 159 (459)
T PRK11522 80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALK 159 (459)
T ss_pred CCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHH
Confidence 45667888776 34443 45788888765 3321 22 234445567777777664334689999999999999988
Q ss_pred Hhc----CCC-CeEEEcCCCChhHHHHHH-HCCCEEEE---ecCCCCC----CCCHHHHHHhhcc-----CCceEEEEcC
Q 025730 165 CVL----DPG-DKIVDCPPTFTMYEFDAA-VNGAAVVK---VPRKSDF----SLNVELIADAVER-----EKPKCIFLTS 226 (249)
Q Consensus 165 ~~~----~pG-d~Vlv~~P~y~~~~~~~~-~~G~~v~~---v~~~~~~----~id~e~l~~~i~~-----~~~k~i~l~~ 226 (249)
... ..| .+|+...-.|......+. ..|-.... .|...++ -.|.+.+++.+++ .++.+|++.-
T Consensus 160 lAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEp 239 (459)
T PRK11522 160 LAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEP 239 (459)
T ss_pred HHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEec
Confidence 532 123 468888877764433222 22211110 1110010 1267788877752 2345555554
Q ss_pred CCCccccCCChH---HHHHHHhhhhC
Q 025730 227 PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 227 PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
...-.|.+.++. +.+.++|++||
T Consensus 240 v~g~~G~~~pp~~yl~~lr~lc~~~g 265 (459)
T PRK11522 240 IQGEGGVILPPEGYLTAVRKLCDEFG 265 (459)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 444567776655 45788999886
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.12 Score=48.54 Aligned_cols=157 Identities=11% Similarity=0.093 Sum_probs=90.7
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC-----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP-----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~-----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..+ ...++ ..|.+.+++.+ +... ..|+.....+|-+.|++..+..-+.++++++++++.+.++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~Al 131 (453)
T PRK06943 52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIAL 131 (453)
T ss_pred CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHH
Confidence 45667888766 33333 45777777765 3221 1234334556777777766533358999999999999998
Q ss_pred HHhc-------CCC-CeEEEcCCCChhHHHHHH-HCCC------------EEEEecCCCCCC------------CCHHHH
Q 025730 164 RCVL-------DPG-DKIVDCPPTFTMYEFDAA-VNGA------------AVVKVPRKSDFS------------LNVELI 210 (249)
Q Consensus 164 ~~~~-------~pG-d~Vlv~~P~y~~~~~~~~-~~G~------------~v~~v~~~~~~~------------id~e~l 210 (249)
+... .+| .+|+...-+|......+. ..|- .+..++...... -+++.+
T Consensus 132 KlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 211 (453)
T PRK06943 132 KMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADV 211 (453)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHH
Confidence 8641 123 678888888864332111 1110 122233211110 124667
Q ss_pred HHhhcc--CCceEEEEcC-CCCccccCCChH---HHHHHHhhhhC
Q 025730 211 ADAVER--EKPKCIFLTS-PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 211 ~~~i~~--~~~k~i~l~~-PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++.+++ .++.+|++.- ...-.|.+.++. +.+.++|++||
T Consensus 212 ~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~g 256 (453)
T PRK06943 212 RRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYG 256 (453)
T ss_pred HHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcC
Confidence 776642 3556666553 256668766665 44788999986
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.11 Score=48.71 Aligned_cols=157 Identities=13% Similarity=0.144 Sum_probs=90.1
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC---C---CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP---Y---IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~---~---~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..+- ..++ ..|.+.+++.+ +... . .|+.....+|-+.|++.+.-..+.++++++++++.+.+
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~A 123 (459)
T PRK05965 44 SGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSA 123 (459)
T ss_pred CCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHH
Confidence 456778887662 2222 35778888765 3321 1 23333345677777776643446899999999999999
Q ss_pred HHHhc------C-CC-CeEEEcCCCChhHHHHH-HHCCC------------EEEEecCCCC----CCCC--------HHH
Q 025730 163 MRCVL------D-PG-DKIVDCPPTFTMYEFDA-AVNGA------------AVVKVPRKSD----FSLN--------VEL 209 (249)
Q Consensus 163 ~~~~~------~-pG-d~Vlv~~P~y~~~~~~~-~~~G~------------~v~~v~~~~~----~~id--------~e~ 209 (249)
++... . +| .+|+...-+|......+ ...|. .+..++.... +.-| ++.
T Consensus 124 lKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (459)
T PRK05965 124 VRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAA 203 (459)
T ss_pred HHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHH
Confidence 87532 1 22 57888888886443221 11111 1122321110 1123 256
Q ss_pred HHHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 210 IADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 210 l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+++.+++ .++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 204 l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~g 249 (459)
T PRK05965 204 LRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELG 249 (459)
T ss_pred HHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcC
Confidence 7776652 3456666554455567776666 44788999986
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.044 Score=49.43 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=85.0
Q ss_pred CCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCC-----CCeEEEcCCCC-hhHHHHHHHCCCEEEE
Q 025730 124 YIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDP-----GDKIVDCPPTF-TMYEFDAAVNGAAVVK 196 (249)
Q Consensus 124 ~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~p-----Gd~Vlv~~P~y-~~~~~~~~~~G~~v~~ 196 (249)
--| .+.+...|.+++.+.+|. +.++.|.-+..+=++++..++++ |.+..+++..| .......+.+|+.+..
T Consensus 73 EAYagsrs~~~L~~avkdifGf--q~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n 150 (471)
T COG3033 73 EAYAGSRSYYALADAVKDIFGF--QYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRN 150 (471)
T ss_pred hhhcccccHHHHHHHHHHhcCc--eeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHhcCCcccc
Confidence 346 445688999999999995 56777776666666666666554 44444454444 5666677779998887
Q ss_pred ecCCC----------CCCCCHHHHHHhhcc---CCceEEEEcCCCC-ccccCCChH--HHHHHHhhhhC
Q 025730 197 VPRKS----------DFSLNVELIADAVER---EKPKCIFLTSPNN-PDGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 197 v~~~~----------~~~id~e~l~~~i~~---~~~k~i~l~~PnN-PTG~~~~~~--e~i~~i~~~~~ 249 (249)
++.++ .+.+|+++|++.+++ .++-.|+++--|| -.|+-.+.. +.+.+||++|+
T Consensus 151 ~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ 219 (471)
T COG3033 151 VYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYD 219 (471)
T ss_pred ccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcC
Confidence 76321 257899999999975 3455666664455 446665555 66888999885
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.24 Score=46.57 Aligned_cols=157 Identities=12% Similarity=0.112 Sum_probs=85.0
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC---CCC---CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP---YIY---PDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~---~~Y---p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
++...||+..+- ..++ ..|.+.+++.+ ++.. ..+ +.....+|.+.|+++++-..+.++++++++++.+.+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~A 131 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVL 131 (460)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHH
Confidence 456678876552 1232 44778887765 3321 111 222345678888887764346899999999999999
Q ss_pred HHHhc-------CCCCe-EEEcCCCChhHHH-HHHHCCCE-----------EEEecCCCCC----CC--------CHHHH
Q 025730 163 MRCVL-------DPGDK-IVDCPPTFTMYEF-DAAVNGAA-----------VVKVPRKSDF----SL--------NVELI 210 (249)
Q Consensus 163 ~~~~~-------~pGd~-Vlv~~P~y~~~~~-~~~~~G~~-----------v~~v~~~~~~----~i--------d~e~l 210 (249)
++... ++++. |+...-+|..... .....|.. +..+|....+ .+ +.+.+
T Consensus 132 iklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 211 (460)
T PRK12403 132 IRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQL 211 (460)
T ss_pred HHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHH
Confidence 88653 23333 4455556654322 22222221 2233311110 11 13455
Q ss_pred HHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 211 ADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 211 ~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++.+.+ .++.+|++.--..-.|.+.++. +.+.++|++||
T Consensus 212 e~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g 256 (460)
T PRK12403 212 EEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYD 256 (460)
T ss_pred HHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 555521 2345555543344457765554 55888999986
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.25 Score=46.71 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=87.0
Q ss_pred CCCeeeccCCCC--CCC-CCHHHHHHHHh-ccCCCCC--CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhc
Q 025730 94 PEDIVKIDANEN--PYG-PPPEVREALGQ-LKFPYIY--PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVL 167 (249)
Q Consensus 94 ~~~~I~L~~~~~--~~~-~p~~v~~al~~-~~~~~~Y--p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~ 167 (249)
+...||+..+-. .++ ..|.+.+++.+ +.....| +.....+|-+.|++.+.- .+.+.++++++|+.+.+++...
T Consensus 98 G~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~lAe~l~~~~p~-~~~v~f~~SGsEA~e~AlklAR 176 (474)
T PLN02482 98 GNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPS-VEMVRFVNSGTEACMGVLRLAR 176 (474)
T ss_pred CCEEEEecccccccccCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCC-CCEEEEeCChHHHHHHHHHHHH
Confidence 456677765532 222 45778888775 4433333 333344566666666542 4789999999999999887532
Q ss_pred --CCCCeEEEcCCCChhHHHH--HHH-CCC-----------------EEEEecCCCCCCCCHHHHHHhhcc--CCceEEE
Q 025730 168 --DPGDKIVDCPPTFTMYEFD--AAV-NGA-----------------AVVKVPRKSDFSLNVELIADAVER--EKPKCIF 223 (249)
Q Consensus 168 --~pGd~Vlv~~P~y~~~~~~--~~~-~G~-----------------~v~~v~~~~~~~id~e~l~~~i~~--~~~k~i~ 223 (249)
...++|+...-+|..+... ... .|. .++.++. -|++.+++.+++ .++.+|+
T Consensus 177 ~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~~~~~iAavI 251 (474)
T PLN02482 177 AYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-----NDLEAVKKLFEANKGEIAAVI 251 (474)
T ss_pred HhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-----CChHHHHHHHHhCCCceEEEE
Confidence 1236788877777654321 111 010 0111111 168888888853 2355555
Q ss_pred EcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 224 LTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 224 l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+.-...-.|.+.++. +.+.++|++||
T Consensus 252 ~Epv~g~~G~i~p~~~fl~~lr~lc~~~g 280 (474)
T PLN02482 252 LEPVVGNSGFIVPKKEFLEGLREITKENG 280 (474)
T ss_pred ECCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 443344467765554 35788999886
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.28 Score=46.02 Aligned_cols=157 Identities=12% Similarity=0.121 Sum_probs=89.9
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..+- ..++ ..|.+.+++.+ +... ..|..+...+|-+.|++...-..+.|+++++++++.+.+++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~Alk 130 (451)
T PRK06062 51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVR 130 (451)
T ss_pred CCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHH
Confidence 466788887763 3332 45677777765 3321 22333334567777777664334689999999999999988
Q ss_pred Hhc-CCC-CeEEEcCCCChhHHHHHHH-CCC-----------EEEEecCCCCCC------CC-------HHHHHHhhcc-
Q 025730 165 CVL-DPG-DKIVDCPPTFTMYEFDAAV-NGA-----------AVVKVPRKSDFS------LN-------VELIADAVER- 216 (249)
Q Consensus 165 ~~~-~pG-d~Vlv~~P~y~~~~~~~~~-~G~-----------~v~~v~~~~~~~------id-------~e~l~~~i~~- 216 (249)
... -.| .+|+...-.|......+.. .|. .+..++....+. -| ++.+++.++.
T Consensus 131 lAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 210 (451)
T PRK06062 131 MARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELE 210 (451)
T ss_pred HHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhc
Confidence 532 123 6788888777644322221 111 112222111111 12 5677777742
Q ss_pred --CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 217 --EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 217 --~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.++.+|++.--..--|.+.++. +.+.++|++||
T Consensus 211 ~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g 248 (451)
T PRK06062 211 GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHG 248 (451)
T ss_pred CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 3455666554344457775555 55788999886
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.26 Score=46.06 Aligned_cols=157 Identities=13% Similarity=0.193 Sum_probs=84.4
Q ss_pred CCCCeeeccCCC--CCC-CCCHHHHHHHHh-ccCC---C--CCCCcChHHHHHHHHHHcCCC--CCC-EEEeCCHHHHHH
Q 025730 93 KPEDIVKIDANE--NPY-GPPPEVREALGQ-LKFP---Y--IYPDPESRRLRAALAKDSGLE--SDH-ILVGCGADELID 160 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~-~~p~~v~~al~~-~~~~---~--~Yp~~g~~~lr~~la~~~~~~--~~~-I~vt~Ga~~~l~ 160 (249)
.+...||+..+. ..+ -..|.+.+++.+ +... + .|+.+...+|-+.|++.+.-. ... ++++++++|+.+
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e 116 (442)
T TIGR00709 37 EGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVE 116 (442)
T ss_pred CCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHH
Confidence 456778887763 222 245778888765 3321 1 134333456667777766421 124 455689999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCChhHHHHHHH-CC------------CEEEEecCCCCCCC--------CH----HHHHHh
Q 025730 161 LIMRCVL--DPGDKIVDCPPTFTMYEFDAAV-NG------------AAVVKVPRKSDFSL--------NV----ELIADA 213 (249)
Q Consensus 161 ~~~~~~~--~pGd~Vlv~~P~y~~~~~~~~~-~G------------~~v~~v~~~~~~~i--------d~----e~l~~~ 213 (249)
.+++... ....+|+...-.|......+.. .| ..+..++..+.+.. +. +.+++.
T Consensus 117 ~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (442)
T TIGR00709 117 AAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENF 196 (442)
T ss_pred HHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHH
Confidence 9887532 2236788888888644433322 22 11233332211111 11 123333
Q ss_pred hcc-----CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 214 VER-----EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 214 i~~-----~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++. .++.+|++....+..|.+.++. +.+.++|++||
T Consensus 197 ~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g 240 (442)
T TIGR00709 197 IEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHD 240 (442)
T ss_pred HHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 321 3566777665555556554444 44788999986
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.22 Score=46.83 Aligned_cols=157 Identities=12% Similarity=0.167 Sum_probs=89.9
Q ss_pred CCCCeeeccCCC--CCC-CCCHHHHHHHHh-ccC---CC--CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPY-GPPPEVREALGQ-LKF---PY--IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~-~~p~~v~~al~~-~~~---~~--~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..+- ..+ -..|.+.+++.+ +.. .. .++.....+|-+.|++.+.-..+.++++++++++.+.++
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~Al 133 (460)
T PRK06916 54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAI 133 (460)
T ss_pred CCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence 456678886652 222 245677777765 332 11 233333556777777776533468999999999999988
Q ss_pred HHhc-------CCC-CeEEEcCCCChhHHHHHHH-CCC------------EEEEecCCCC----CC--------CCHHHH
Q 025730 164 RCVL-------DPG-DKIVDCPPTFTMYEFDAAV-NGA------------AVVKVPRKSD----FS--------LNVELI 210 (249)
Q Consensus 164 ~~~~-------~pG-d~Vlv~~P~y~~~~~~~~~-~G~------------~v~~v~~~~~----~~--------id~e~l 210 (249)
+... .+| .+|+...-+|......+.. .|. .+..+|.... +. -+++.+
T Consensus 134 klAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l 213 (460)
T PRK06916 134 KMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEEL 213 (460)
T ss_pred HHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHH
Confidence 8542 233 6788888888653332222 121 1223331110 11 135666
Q ss_pred HHhhcc--CCceEEEEcC-CCCccccCCChH---HHHHHHhhhhC
Q 025730 211 ADAVER--EKPKCIFLTS-PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 211 ~~~i~~--~~~k~i~l~~-PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++.+++ .++.+|++.- ...-.|.+.++. +.+.++|++||
T Consensus 214 ~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g 258 (460)
T PRK06916 214 EELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYN 258 (460)
T ss_pred HHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 666642 3455666543 255567776555 44788999886
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.34 Score=45.55 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=88.4
Q ss_pred CCCCeeeccCC-CCCCC-CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN-ENPYG-PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 93 ~~~~~I~L~~~-~~~~~-~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
.+...||+..+ ...++ ..|.+.+++.+ +... .+|+.....+|.+.|+++++-..+.++++++++++.+.+++.
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~Alkl 149 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKL 149 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHH
Confidence 45667888633 22344 56788888765 3221 234444456788888887753346899999999999998875
Q ss_pred hc--CCCCeEEEcCCCChhHHHHHH-HCCC------------EEEEecCCCC----CC-C------CHHHHHHhhcc-CC
Q 025730 166 VL--DPGDKIVDCPPTFTMYEFDAA-VNGA------------AVVKVPRKSD----FS-L------NVELIADAVER-EK 218 (249)
Q Consensus 166 ~~--~pGd~Vlv~~P~y~~~~~~~~-~~G~------------~v~~v~~~~~----~~-i------d~e~l~~~i~~-~~ 218 (249)
.. ....+|+...-.|......+. ..|. .+..++.... +. . +++.+++.+++ .+
T Consensus 150 Ar~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 229 (459)
T PRK06082 150 ARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGG 229 (459)
T ss_pred HHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCC
Confidence 32 223678888877764332222 2221 1222331111 10 1 13557777652 24
Q ss_pred ceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 219 PKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 219 ~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+.+|++.-..+- |.++++. +.+.++|++||
T Consensus 230 vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g 262 (459)
T PRK06082 230 IGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHN 262 (459)
T ss_pred EEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcC
Confidence 555554433333 5544553 56888999986
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.34 Score=45.60 Aligned_cols=157 Identities=10% Similarity=0.077 Sum_probs=87.9
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC---C---CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP---Y---IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~---~---~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..+. ..++ .+|.+.+++.+ +... . .|......+|-+.|++.+.-+-+.++++++++++.+.+
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~A 125 (460)
T PRK06105 46 AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTV 125 (460)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHH
Confidence 456788987763 3332 45778888775 3321 1 23323345677777777653346899999999999999
Q ss_pred HHHhc------C-CC-CeEEEcCCCChhHHHHH-HHCCC------------EEEEecCCCCCCC-------------CHH
Q 025730 163 MRCVL------D-PG-DKIVDCPPTFTMYEFDA-AVNGA------------AVVKVPRKSDFSL-------------NVE 208 (249)
Q Consensus 163 ~~~~~------~-pG-d~Vlv~~P~y~~~~~~~-~~~G~------------~v~~v~~~~~~~i-------------d~e 208 (249)
++... . +| .+|+...-.|......+ ...|. .+..++....+.. .++
T Consensus 126 lKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 205 (460)
T PRK06105 126 VKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLAN 205 (460)
T ss_pred HHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHH
Confidence 88632 1 23 57887777775433221 11111 1122221111111 135
Q ss_pred HHHHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 209 LIADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 209 ~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++++.+.. .++.+|++.--..-.|.+.++. +.+.++|++||
T Consensus 206 ~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~ 252 (460)
T PRK06105 206 ELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYD 252 (460)
T ss_pred HHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 66666631 3455666544355557665554 45788999986
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.27 Score=46.29 Aligned_cols=157 Identities=9% Similarity=0.172 Sum_probs=88.6
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC---C--CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP---Y--IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~---~--~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..+- ..++ ..|.+.+++.+ +... . .|......+|-+.|++......+.++++++++++.+.++
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~Al 124 (466)
T PRK07030 45 EGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVAL 124 (466)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHH
Confidence 356678886662 2222 34677777765 3321 1 233333456777777766433468999999999999998
Q ss_pred HHhc-------CCC-CeEEEcCCCChhHHHHHHH-CCC------------EEEEecCCCCC----CC--------CHHHH
Q 025730 164 RCVL-------DPG-DKIVDCPPTFTMYEFDAAV-NGA------------AVVKVPRKSDF----SL--------NVELI 210 (249)
Q Consensus 164 ~~~~-------~pG-d~Vlv~~P~y~~~~~~~~~-~G~------------~v~~v~~~~~~----~i--------d~e~l 210 (249)
+... .+| .+|+...-+|......+.. .|. .+..+|....+ +. +++.+
T Consensus 125 KlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l 204 (466)
T PRK07030 125 KMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHM 204 (466)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHH
Confidence 8541 123 5788888888644332222 121 12333321111 11 24566
Q ss_pred HHhhcc--CCceEEEEcC-CCCccccCCChH---HHHHHHhhhhC
Q 025730 211 ADAVER--EKPKCIFLTS-PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 211 ~~~i~~--~~~k~i~l~~-PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++.+.+ .++.+|++.- ...-.|...++. +.+.++|++||
T Consensus 205 e~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g 249 (466)
T PRK07030 205 EQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYG 249 (466)
T ss_pred HHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcC
Confidence 776642 3455665443 245557766655 45788999886
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.45 Score=44.49 Aligned_cols=157 Identities=16% Similarity=0.193 Sum_probs=87.6
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccC---CC--CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKF---PY--IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~---~~--~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..+. ..++ ..|.+.+++.+ +.. .. .++.+...+|-+.|++.+.-..+.+.++++++++.+.++
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Al 123 (442)
T PRK13360 44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTAL 123 (442)
T ss_pred CCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence 456678887662 2232 45778877765 322 11 223333456677777766423468999999999999888
Q ss_pred HHhcC-------C-CCeEEEcCCCChhHHHHHH-HCC------------CEEEEecCCCC-----CCC--------CHHH
Q 025730 164 RCVLD-------P-GDKIVDCPPTFTMYEFDAA-VNG------------AAVVKVPRKSD-----FSL--------NVEL 209 (249)
Q Consensus 164 ~~~~~-------p-Gd~Vlv~~P~y~~~~~~~~-~~G------------~~v~~v~~~~~-----~~i--------d~e~ 209 (249)
+.... + ..+|+...-.|......+. ..| ..+..+|...+ +.. ..+.
T Consensus 124 klAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 203 (442)
T PRK13360 124 KIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADE 203 (442)
T ss_pred HHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHH
Confidence 74321 2 2578888888865432211 111 11233332111 111 1456
Q ss_pred HHHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 210 IADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 210 l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+++.+.. .++.+|++.-...-.|...++. +.+.++|++||
T Consensus 204 le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g 249 (442)
T PRK13360 204 LERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHG 249 (442)
T ss_pred HHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 7777642 3344555444344557665544 55788999886
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.51 Score=43.65 Aligned_cols=157 Identities=12% Similarity=0.175 Sum_probs=87.5
Q ss_pred CCCCeeeccCCC--CCC-CCCHHHHHHHHh-ccC-CCC----CCCcChHHHHHHHHHHcCCC--C-CCEEE-eCCHHHHH
Q 025730 93 KPEDIVKIDANE--NPY-GPPPEVREALGQ-LKF-PYI----YPDPESRRLRAALAKDSGLE--S-DHILV-GCGADELI 159 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~-~~p~~v~~al~~-~~~-~~~----Yp~~g~~~lr~~la~~~~~~--~-~~I~v-t~Ga~~~l 159 (249)
++...||+..+- ..+ -..|.+.+++.+ +.. ... +......+|-+.|++.+..+ . +.+++ +++++++.
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~ 112 (412)
T TIGR02407 33 DGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAV 112 (412)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHH
Confidence 456778887663 223 246788888875 432 111 11122344555665553111 1 24655 58999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCChhHHHHHHH-CC------------CEEEEecCCCCCC---CCHHHHHHhhcc-----
Q 025730 160 DLIMRCVL--DPGDKIVDCPPTFTMYEFDAAV-NG------------AAVVKVPRKSDFS---LNVELIADAVER----- 216 (249)
Q Consensus 160 ~~~~~~~~--~pGd~Vlv~~P~y~~~~~~~~~-~G------------~~v~~v~~~~~~~---id~e~l~~~i~~----- 216 (249)
+.+++... ....+|+...-+|......+.. .| ..+..+|..+... -+++.+++.+++
T Consensus 113 e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~ 192 (412)
T TIGR02407 113 ESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGV 192 (412)
T ss_pred HHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCC
Confidence 98887542 2236788888888644332221 11 1223344221111 246777877753
Q ss_pred CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 217 EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 217 ~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.++.+|++.--.+..|.+..+. +.+.++|++||
T Consensus 193 ~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g 228 (412)
T TIGR02407 193 DLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHD 228 (412)
T ss_pred CceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 2456676655577889865555 44788899886
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.57 Score=43.46 Aligned_cols=157 Identities=11% Similarity=0.078 Sum_probs=88.7
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCCC--C---CCCcChHHHHHHHHHHcCC-CCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFPY--I---YPDPESRRLRAALAKDSGL-ESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~~--~---Yp~~g~~~lr~~la~~~~~-~~~~I~vt~Ga~~~l~~~ 162 (249)
.+...+|+..+. ..++ ..|.+.+++.+ +.... . ++.+...+|-+.+++.... ..+.++++++++++.+.+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~A 117 (421)
T PRK06777 38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENA 117 (421)
T ss_pred CCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHH
Confidence 456678887663 2232 35677777765 33211 1 2333345666777776542 246899999999999988
Q ss_pred HHHhc--CCCCeEEEcCCCChhHHHHHHH-CCCE-------------EEEecCCC-CC----CCCHHHHHHhhcc----C
Q 025730 163 MRCVL--DPGDKIVDCPPTFTMYEFDAAV-NGAA-------------VVKVPRKS-DF----SLNVELIADAVER----E 217 (249)
Q Consensus 163 ~~~~~--~pGd~Vlv~~P~y~~~~~~~~~-~G~~-------------v~~v~~~~-~~----~id~e~l~~~i~~----~ 217 (249)
++... ....+|+...-+|......+.. .|.. +..++..+ .. ..+++.+++.+++ .
T Consensus 118 lklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (421)
T PRK06777 118 VKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPD 197 (421)
T ss_pred HHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCC
Confidence 87432 1235788888888644333221 2210 12222111 11 1235667776642 3
Q ss_pred CceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 218 KPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 218 ~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++.+|++.-..+..|....+. +.+.++|++||
T Consensus 198 ~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g 232 (421)
T PRK06777 198 QVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHG 232 (421)
T ss_pred ceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 466676655567788654443 44788899886
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.36 Score=45.16 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=88.4
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccC---C--CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKF---P--YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~---~--~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..+- ..++ ..|.+.+++.+ +.. . ..|..+...+|-+.|++.+.-..+.|.++++++++.+.++
T Consensus 47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Al 126 (445)
T PRK09221 47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTAL 126 (445)
T ss_pred CCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence 456788887662 2333 45777777765 322 1 1233333456777777766433468999999999999988
Q ss_pred HHhc------C-C-CCeEEEcCCCChhHHHHHHH-CC------------CEEEEecCCC-C----CCC--------CHHH
Q 025730 164 RCVL------D-P-GDKIVDCPPTFTMYEFDAAV-NG------------AAVVKVPRKS-D----FSL--------NVEL 209 (249)
Q Consensus 164 ~~~~------~-p-Gd~Vlv~~P~y~~~~~~~~~-~G------------~~v~~v~~~~-~----~~i--------d~e~ 209 (249)
+... . + ..+|+...-.|......+.. .| ..+..++... . +.. ..++
T Consensus 127 klAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (445)
T PRK09221 127 KIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADD 206 (445)
T ss_pred HHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHH
Confidence 7532 1 2 25788888888643322111 11 1122233211 0 111 1356
Q ss_pred HHHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 210 IADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 210 l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+++.++. .++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 207 l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g 252 (445)
T PRK09221 207 LERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHG 252 (445)
T ss_pred HHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 6666642 3455666554455567776554 55788999886
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.29 Score=46.17 Aligned_cols=157 Identities=8% Similarity=0.115 Sum_probs=89.3
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-cc---CCC--CCCCcChHHHHHHHHHHcCC-----CCCCEEEeCCHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LK---FPY--IYPDPESRRLRAALAKDSGL-----ESDHILVGCGADEL 158 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~---~~~--~Yp~~g~~~lr~~la~~~~~-----~~~~I~vt~Ga~~~ 158 (249)
++...||+..+ ...++ ..|.+.+++.+ +. ... .|+.....+|-+.|++.+.- +.+.++++++++++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEA 141 (472)
T PRK08742 62 DGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAG 141 (472)
T ss_pred CCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHH
Confidence 45667888766 33332 45677777765 32 211 23333345666777766532 23589999999999
Q ss_pred HHHHHHHhcC-------CC-CeEEEcCCCChhHHHHHHH-CCC------------EEEEecCCCCC----CC--------
Q 025730 159 IDLIMRCVLD-------PG-DKIVDCPPTFTMYEFDAAV-NGA------------AVVKVPRKSDF----SL-------- 205 (249)
Q Consensus 159 l~~~~~~~~~-------pG-d~Vlv~~P~y~~~~~~~~~-~G~------------~v~~v~~~~~~----~i-------- 205 (249)
.+.+++.... +| .+|+...-+|......+.. .|. .+..+|..+.+ +.
T Consensus 142 vE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (472)
T PRK08742 142 VEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQ 221 (472)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHH
Confidence 9998875421 22 6788888888644332222 111 12233321111 11
Q ss_pred CHHHHHHhhcc--CCceEEEEcC-CCCccccCCChH---HHHHHHhhhhC
Q 025730 206 NVELIADAVER--EKPKCIFLTS-PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 206 d~e~l~~~i~~--~~~k~i~l~~-PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+++.+++.+.+ .++.+|++.- ...-.|.+.++. +.+.++|++||
T Consensus 222 ~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~g 271 (472)
T PRK08742 222 AADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHG 271 (472)
T ss_pred HHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcC
Confidence 25666776642 3455665443 255668766665 44788999986
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.29 Score=45.96 Aligned_cols=157 Identities=15% Similarity=0.170 Sum_probs=87.2
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC------CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP------YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~------~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..+. ..++ ..|.+.+++.+ +... ..|+.+...+|-+.|++.+.-.-+.++++++++++.+.+
T Consensus 48 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~A 127 (456)
T PRK07480 48 EGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTV 127 (456)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHH
Confidence 456678887652 2232 35778777765 3321 123333456677777777653346899999999999998
Q ss_pred HHHhcC-------CC-CeEEEcCCCChhHHHHH-HHCCCE------------EEEecCCCCC----CCC--------HHH
Q 025730 163 MRCVLD-------PG-DKIVDCPPTFTMYEFDA-AVNGAA------------VVKVPRKSDF----SLN--------VEL 209 (249)
Q Consensus 163 ~~~~~~-------pG-d~Vlv~~P~y~~~~~~~-~~~G~~------------v~~v~~~~~~----~id--------~e~ 209 (249)
++.... +| .+|+...-+|......+ ...|.. +..++....+ ..+ ++.
T Consensus 128 lklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 207 (456)
T PRK07480 128 LRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQ 207 (456)
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHH
Confidence 875421 33 46887777775432211 111111 1122211100 011 255
Q ss_pred HHHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 210 IADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 210 l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+++.+.+ .++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 208 l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g 253 (456)
T PRK07480 208 LEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYD 253 (456)
T ss_pred HHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 5554421 3456666654444467766665 45788999986
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.54 Score=44.07 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=87.9
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..+- ..++ ..|.+.+++.+ +... ..|+.....+|-+.|++.++. .+.++++++++++.+.+++
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~lae~l~~~~~~-~~~v~f~~sGseA~e~Alk 123 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPLTQSHEPAIKLAEKLNEWLGG-EYVIFFSNSGSEANETAFK 123 (451)
T ss_pred CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHHhCCC-CCEEEEeCCcHHHHHHHHH
Confidence 456678886652 2232 35777777765 3321 123433456677888877754 2579999999999998887
Q ss_pred HhcC-------CC-CeEEEcCCCChhHHHHHHH-CCC------------EEEEecCCCCCCC---------C---HHHHH
Q 025730 165 CVLD-------PG-DKIVDCPPTFTMYEFDAAV-NGA------------AVVKVPRKSDFSL---------N---VELIA 211 (249)
Q Consensus 165 ~~~~-------pG-d~Vlv~~P~y~~~~~~~~~-~G~------------~v~~v~~~~~~~i---------d---~e~l~ 211 (249)
.... +| .+|+...-.|......+.. .|. .+..++..+.+.. | ++.++
T Consensus 124 lAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (451)
T PRK07678 124 IARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEID 203 (451)
T ss_pred HHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHH
Confidence 5421 23 5788888887644332221 111 1222332111111 1 22355
Q ss_pred Hhhc---cCCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 212 DAVE---REKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 212 ~~i~---~~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+.++ ..++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 204 ~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g 247 (451)
T PRK07678 204 RVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHG 247 (451)
T ss_pred HHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 5553 23566666553344467776665 45788999986
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.35 Score=45.19 Aligned_cols=157 Identities=10% Similarity=0.048 Sum_probs=89.4
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC--CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP--YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~--~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
++...||+..+- ..++ ..|.+.+++.+ +... ..++.....+|-+.|.+.++...+.+.++++++|+.+.+++..
T Consensus 51 dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklA 130 (433)
T PRK00615 51 LGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLA 130 (433)
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHH
Confidence 456678887663 2333 45788888765 3322 2234444566777777777543468999999999999998854
Q ss_pred c-CCC-CeEEEcCCCChhHHH---HH-HHCCCEEEEe------c-CCCC---C-CCCHHHHHHhhcc--CCceEEEEcCC
Q 025730 167 L-DPG-DKIVDCPPTFTMYEF---DA-AVNGAAVVKV------P-RKSD---F-SLNVELIADAVER--EKPKCIFLTSP 227 (249)
Q Consensus 167 ~-~pG-d~Vlv~~P~y~~~~~---~~-~~~G~~v~~v------~-~~~~---~-~id~e~l~~~i~~--~~~k~i~l~~P 227 (249)
. -.| .+|+...-+|..+.. .. ...+.....+ + .... + .-|++.+++.+.+ .++.+|++.-.
T Consensus 131 r~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv 210 (433)
T PRK00615 131 RGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPI 210 (433)
T ss_pred HHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCC
Confidence 2 123 578877777765431 11 1111000000 0 0000 0 1267888888753 23455554433
Q ss_pred CCccccCCChH---HHHHHHhhhhC
Q 025730 228 NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 228 nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
..-.|...++. +.+..+|++||
T Consensus 211 ~~~~G~~~p~~~yl~~l~~lc~~~g 235 (433)
T PRK00615 211 CANMGVVLPKPGFIEGIIQTCRRTG 235 (433)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHcC
Confidence 34457665554 45788999986
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.78 Score=42.47 Aligned_cols=157 Identities=10% Similarity=0.062 Sum_probs=88.1
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC--CC---CCCcChHHHHHHHHHHcCC-CCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP--YI---YPDPESRRLRAALAKDSGL-ESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~--~~---Yp~~g~~~lr~~la~~~~~-~~~~I~vt~Ga~~~l~~~ 162 (249)
++...||+..+. ..++ ..+.+.+++.+ +... .. ++.+...+|-+.|++...- ..+.++++++++++++.+
T Consensus 31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~A 110 (420)
T TIGR00700 31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENA 110 (420)
T ss_pred CCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHH
Confidence 456678887763 2222 45778888765 3321 11 2223345677777776642 235799999999999988
Q ss_pred HHHhc--CCCCeEEEcCCCChhHHHHHHH-CCC-------------EEEEecCCCCCC-------C----CHHHHHHhhc
Q 025730 163 MRCVL--DPGDKIVDCPPTFTMYEFDAAV-NGA-------------AVVKVPRKSDFS-------L----NVELIADAVE 215 (249)
Q Consensus 163 ~~~~~--~pGd~Vlv~~P~y~~~~~~~~~-~G~-------------~v~~v~~~~~~~-------i----d~e~l~~~i~ 215 (249)
++... ....+|+...-+|......+.. .|. .+..++....+. . +++.+++.+.
T Consensus 111 lklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (420)
T TIGR00700 111 VKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFV 190 (420)
T ss_pred HHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHH
Confidence 87432 2235788888888643322221 111 122233211110 1 2456666552
Q ss_pred ----cCCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 216 ----REKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 216 ----~~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
..++.+|++.--..-+|.++++. +.+.++|++||
T Consensus 191 ~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g 231 (420)
T TIGR00700 191 IDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHG 231 (420)
T ss_pred hhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 13456666554455578876665 44788999886
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=1 Score=42.39 Aligned_cols=157 Identities=15% Similarity=0.205 Sum_probs=88.6
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC----CCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP----YIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~----~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..+. ..++ ..|.+.+++.+ +... ..| +.+...+|-+.|++..+...+.+.++++++|+.+.++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~Al 130 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAI 130 (457)
T ss_pred CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHH
Confidence 456788887763 2332 45678877765 3321 122 2233456777777776543468999999999999998
Q ss_pred HHhc--CCCCeEEEcCCCChhHHHHHH-HCCC-------------EEEEecCCCCCC--------CCH--------HHHH
Q 025730 164 RCVL--DPGDKIVDCPPTFTMYEFDAA-VNGA-------------AVVKVPRKSDFS--------LNV--------ELIA 211 (249)
Q Consensus 164 ~~~~--~pGd~Vlv~~P~y~~~~~~~~-~~G~-------------~v~~v~~~~~~~--------id~--------e~l~ 211 (249)
+... ....+|+...-+|......+. ..|. .+..+|..+.+. -|. +.++
T Consensus 131 klAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le 210 (457)
T PRK05639 131 KVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLE 210 (457)
T ss_pred HHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHH
Confidence 7542 223678888887764332221 1111 133344221111 022 2344
Q ss_pred Hhhc-----cCCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 212 DAVE-----REKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 212 ~~i~-----~~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+.+. ..++.+|++.--..-.|.+.++. +.+.++|++||
T Consensus 211 ~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g 256 (457)
T PRK05639 211 NYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHG 256 (457)
T ss_pred HHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 4331 24566666554344567766666 44788899886
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.7 Score=44.02 Aligned_cols=157 Identities=11% Similarity=0.095 Sum_probs=86.1
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCCC------CCCCcChHHHHHHHHHHc-CCCCCCEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFPY------IYPDPESRRLRAALAKDS-GLESDHILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~~------~Yp~~g~~~lr~~la~~~-~~~~~~I~vt~Ga~~~l~~ 161 (249)
.+...||+..+ ...++ ..|.+.+++.+ +.... .++.....+|-+.|.+.+ +.+.+.++++++++++.+.
T Consensus 87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~ 166 (504)
T PLN02760 87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDT 166 (504)
T ss_pred CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHH
Confidence 45678898775 23333 45778888765 43211 112222345666666654 2233578999999999999
Q ss_pred HHHHhc-------CCC-CeEEEcCCCChhHHHHH-HHCCCE------------EEEecCCCCCC-------------CCH
Q 025730 162 IMRCVL-------DPG-DKIVDCPPTFTMYEFDA-AVNGAA------------VVKVPRKSDFS-------------LNV 207 (249)
Q Consensus 162 ~~~~~~-------~pG-d~Vlv~~P~y~~~~~~~-~~~G~~------------v~~v~~~~~~~-------------id~ 207 (249)
+++... .+| .+|+..+-.|......+ ...|.. +..++....+. ...
T Consensus 167 AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 246 (504)
T PLN02760 167 QVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLA 246 (504)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHH
Confidence 988652 133 67888888886543322 222221 11222111111 012
Q ss_pred HHHHHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 208 ELIADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 208 e~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+++++.+.. .++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 247 ~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g 294 (504)
T PLN02760 247 DNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYD 294 (504)
T ss_pred HHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 446665531 2355555444344457765553 66888999986
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.58 Score=44.09 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=86.6
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccC---CCC---CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKF---PYI---YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~---~~~---Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
++...||+..+. ..++ ..|.+.+++.+ +.. ... ++.....+|-+.|++...-.-+.++++++++++.+.+
T Consensus 49 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~A 128 (466)
T PRK07036 49 DGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSA 128 (466)
T ss_pred CCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHH
Confidence 456678887663 2232 45778887765 332 111 2322344566666666543346899999999999998
Q ss_pred HHHhc------C-CC-CeEEEcCCCChhHHHHHHH-CCC------------EEEEecCCCC----CCCC--------HHH
Q 025730 163 MRCVL------D-PG-DKIVDCPPTFTMYEFDAAV-NGA------------AVVKVPRKSD----FSLN--------VEL 209 (249)
Q Consensus 163 ~~~~~------~-pG-d~Vlv~~P~y~~~~~~~~~-~G~------------~v~~v~~~~~----~~id--------~e~ 209 (249)
++... . +| .+|+...-+|......+.. .|. .+..++.... ++.+ ++.
T Consensus 129 lklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 208 (466)
T PRK07036 129 LRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDE 208 (466)
T ss_pred HHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHH
Confidence 88531 1 22 5788888777644322221 111 1233332111 1111 234
Q ss_pred HHHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 210 IADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 210 l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+++.+.. .++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 209 ~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g 254 (466)
T PRK07036 209 FEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYD 254 (466)
T ss_pred HHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcC
Confidence 4454431 3456666554455567776655 55788999986
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.67 Score=43.39 Aligned_cols=157 Identities=15% Similarity=0.250 Sum_probs=88.5
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC----C-CCCCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP----Y-IYPDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~----~-~Yp~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..+. ..++ ..|.+.+++.+ +... . .|+.+...+|-+.|++.+.-. .+.|+++++++++.+.+
T Consensus 40 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~A 119 (445)
T PRK08593 40 DGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGI 119 (445)
T ss_pred CCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHH
Confidence 455678886652 2332 45777777765 3321 1 123334566777887776432 25799999999999999
Q ss_pred HHHhc-CCC-CeEEEcCCCChhHHHHHH-HCCC-------------EEEEecCCCCCC-----CC-------HHHHHHhh
Q 025730 163 MRCVL-DPG-DKIVDCPPTFTMYEFDAA-VNGA-------------AVVKVPRKSDFS-----LN-------VELIADAV 214 (249)
Q Consensus 163 ~~~~~-~pG-d~Vlv~~P~y~~~~~~~~-~~G~-------------~v~~v~~~~~~~-----id-------~e~l~~~i 214 (249)
++... -.| .+|+...-.|......+. ..+. .+..+|..+.+. .+ ++.+++.+
T Consensus 120 iklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
T PRK08593 120 IKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMF 199 (445)
T ss_pred HHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHH
Confidence 88431 123 568877777764332221 1221 123344221110 11 24444444
Q ss_pred c----cCCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 215 E----REKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 215 ~----~~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
. ..++.+|++.-.....|.+.++. +.+.++|++||
T Consensus 200 ~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g 241 (445)
T PRK08593 200 EKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHG 241 (445)
T ss_pred HhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 2 14566777666666678775554 45788899886
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.59 Score=42.84 Aligned_cols=134 Identities=15% Similarity=0.102 Sum_probs=86.6
Q ss_pred CHHHHHHHHh-ccC---CCCCCCcC--hHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHHHHHhcCCCCeEE-----EcC
Q 025730 110 PPEVREALGQ-LKF---PYIYPDPE--SRRLRAALAKDSGLE-SDHILVGCGADELIDLIMRCVLDPGDKIV-----DCP 177 (249)
Q Consensus 110 p~~v~~al~~-~~~---~~~Yp~~g--~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vl-----v~~ 177 (249)
.+++++++.. +.. ...|=..+ ..+++......+++. .+.+++++..+.++.++..++..++..|+ ++
T Consensus 40 ~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~~~EvVis~g~lV~- 118 (395)
T COG1921 40 SPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVE- 118 (395)
T ss_pred CHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhccCCeEEEEcccccc-
Confidence 3566676654 211 12222222 344554444445553 67889999999999999998876544443 33
Q ss_pred CCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcC-CCC-ccccCCChHHHHHHHhhhhC
Q 025730 178 PTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTS-PNN-PDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 178 P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~-PnN-PTG~~~~~~e~i~~i~~~~~ 249 (249)
+........++..|++++.+... ..-...+++.+|. +++++++-++ .|- -+|.+ ..+.+..|++++|
T Consensus 119 gg~~~v~d~~~~aG~~l~EvG~t--n~t~~~d~~~AIn-e~ta~llkV~s~~~~f~~~l--~~~~l~~ia~~~~ 187 (395)
T COG1921 119 GGAFRVPDIIRLAGAKLVEVGTT--NRTHLKDYELAIN-ENTALLLKVHSSNYGFTGML--SEEELVEIAHEKG 187 (395)
T ss_pred CCCCChhHHHHHcCCEEEEeccc--CcCCHHHHHHHhc-cCCeeEEEEeeccccccccc--cHHHHHHHHHHcC
Confidence 56678999999999999999742 2357889999998 6888777554 443 22333 3455677888775
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.92 Score=46.72 Aligned_cols=90 Identities=13% Similarity=0.124 Sum_probs=59.9
Q ss_pred CCCCeeeccCCCCCCC-CCHHHHHHHHh-ccC---CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-
Q 025730 93 KPEDIVKIDANENPYG-PPPEVREALGQ-LKF---PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV- 166 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~-~p~~v~~al~~-~~~---~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~- 166 (249)
.+...||+..|...++ ..|.+.+++.+ +.. ..+|......+|.+.|++.+.-..+.++++++++++.+.+++..
T Consensus 583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr 662 (972)
T PRK06149 583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAW 662 (972)
T ss_pred CCCEEEECCCCccccCCCCHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHH
Confidence 3567889987765565 66888888765 322 12233333567788888877433468999999999999998832
Q ss_pred -cCCCCeEEEcCCCChh
Q 025730 167 -LDPGDKIVDCPPTFTM 182 (249)
Q Consensus 167 -~~pGd~Vlv~~P~y~~ 182 (249)
.....+|+...-.|..
T Consensus 663 ~~tgr~~ii~~~~~yHG 679 (972)
T PRK06149 663 AASGRRDVVSVLEAYHG 679 (972)
T ss_pred HhcCCCeEEEEeCCCCC
Confidence 1223567777777764
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.68 Score=43.03 Aligned_cols=156 Identities=10% Similarity=0.156 Sum_probs=87.9
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC---C--CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP---Y--IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~---~--~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..+ ...++ ..+.+.+++.+ ++.. . .+......+|.+.|++...-.-+.++++++++++.+.++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~Al 117 (422)
T PRK05630 38 DGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAI 117 (422)
T ss_pred CCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHH
Confidence 45667888765 23332 35677777765 3321 1 122333456777777776433468999999999999888
Q ss_pred HHhcC-------CC-CeEEEcCCCChhHHHHHHH-CCC-------------EEEEecCCCCCCCC-------HHHHHHhh
Q 025730 164 RCVLD-------PG-DKIVDCPPTFTMYEFDAAV-NGA-------------AVVKVPRKSDFSLN-------VELIADAV 214 (249)
Q Consensus 164 ~~~~~-------pG-d~Vlv~~P~y~~~~~~~~~-~G~-------------~v~~v~~~~~~~id-------~e~l~~~i 214 (249)
+.... +| .+|+...-+|......+.. .+. ....+|.......+ .+.+++.+
T Consensus 118 klAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 197 (422)
T PRK05630 118 KMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLI 197 (422)
T ss_pred HHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHH
Confidence 75321 23 5788888888643222211 111 12333321111112 23445555
Q ss_pred ccCCceEEEEcC-CCCccccCCChH---HHHHHHhhhhC
Q 025730 215 EREKPKCIFLTS-PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 215 ~~~~~k~i~l~~-PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
. .++.+|++.- ...-.|...++. +.+.++|++||
T Consensus 198 ~-~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g 235 (422)
T PRK05630 198 D-ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHD 235 (422)
T ss_pred h-hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence 4 4666776553 255567776665 44788999886
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=1 Score=42.26 Aligned_cols=157 Identities=12% Similarity=0.101 Sum_probs=87.8
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC-C----CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP-Y----IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~-~----~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.++..||+..+- ..++ ..|.+.+++.+ +... + .|......+|-+.|++.+.-..+.++++++++++.+.++
T Consensus 29 dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~Al 108 (447)
T PRK06917 29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAM 108 (447)
T ss_pred CCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHH
Confidence 456678887662 2333 35788887765 3321 1 233333456777777766433457999999999999998
Q ss_pred HHhc-------CCC-CeEEEcCCCChhHHHHHH-HCCC------------EEEEecCCCCC----CC--------CHHHH
Q 025730 164 RCVL-------DPG-DKIVDCPPTFTMYEFDAA-VNGA------------AVVKVPRKSDF----SL--------NVELI 210 (249)
Q Consensus 164 ~~~~-------~pG-d~Vlv~~P~y~~~~~~~~-~~G~------------~v~~v~~~~~~----~i--------d~e~l 210 (249)
+... .+| .+|+...-.|..+...+. ..|. .+..++....+ .- +++.+
T Consensus 109 klAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 188 (447)
T PRK06917 109 KIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATEL 188 (447)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHH
Confidence 8541 133 678888888864433222 2221 11122211000 00 24566
Q ss_pred HHhhcc---CCceEEEEcCCC-CccccCCChH---HHHHHHhhhhC
Q 025730 211 ADAVER---EKPKCIFLTSPN-NPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 211 ~~~i~~---~~~k~i~l~~Pn-NPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++.+++ .++.+|++.-.. |--|.+.++. +.+.++|++||
T Consensus 189 e~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g 234 (447)
T PRK06917 189 ETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYD 234 (447)
T ss_pred HHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcC
Confidence 666652 245566654323 3345665555 44788999886
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=94.87 E-value=1 Score=41.86 Aligned_cols=157 Identities=14% Similarity=0.222 Sum_probs=85.9
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccC-CC----CCCCcChHHHHHHHHHHcCC--CCC-CEEE-eCCHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKF-PY----IYPDPESRRLRAALAKDSGL--ESD-HILV-GCGADELI 159 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~-~~----~Yp~~g~~~lr~~la~~~~~--~~~-~I~v-t~Ga~~~l 159 (249)
++...||+..+- ..++ ..|.+.+++.+ +.. .. .+......+|-+.+++.+.. ..+ .+++ +++++++.
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~ 116 (425)
T PRK09264 37 DGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAV 116 (425)
T ss_pred CCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHH
Confidence 456678886663 2232 45788888865 321 11 12222244566666665421 122 4655 58999999
Q ss_pred HHHHHHhc-CCC-CeEEEcCCCChhHHHHHHH-CC------------CEEEEecCCCCC--C-CCHHHHHHhhcc-----
Q 025730 160 DLIMRCVL-DPG-DKIVDCPPTFTMYEFDAAV-NG------------AAVVKVPRKSDF--S-LNVELIADAVER----- 216 (249)
Q Consensus 160 ~~~~~~~~-~pG-d~Vlv~~P~y~~~~~~~~~-~G------------~~v~~v~~~~~~--~-id~e~l~~~i~~----- 216 (249)
+.+++... -.| .+|+...-+|......+.. .| ..+..+|....+ . -|++.+++.+++
T Consensus 117 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~ 196 (425)
T PRK09264 117 EAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGV 196 (425)
T ss_pred HHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCC
Confidence 98887542 123 6788888877644322211 11 123444432111 1 267788888753
Q ss_pred CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 217 EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 217 ~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 197 ~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g 232 (425)
T PRK09264 197 DLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHD 232 (425)
T ss_pred CceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 1345665544344467655544 55788999986
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.1 Score=41.92 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=57.1
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCCC-----CCCCcChHHHHHHHHHHcCCCC-CCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFPY-----IYPDPESRRLRAALAKDSGLES-DHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~~-----~Yp~~g~~~lr~~la~~~~~~~-~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..+- ..++ ..|.+.+++.+ +.... .+..+...+|-+.|++.+.-.. +.++++++++++.+.+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~A 131 (451)
T PRK06918 52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENA 131 (451)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHH
Confidence 456678887763 2232 45678888765 33211 1222234567777777664222 5899999999999998
Q ss_pred HHHhc--CCCCeEEEcCCCChhHH
Q 025730 163 MRCVL--DPGDKIVDCPPTFTMYE 184 (249)
Q Consensus 163 ~~~~~--~pGd~Vlv~~P~y~~~~ 184 (249)
++... ....+|+...-+|....
T Consensus 132 lklAr~~tgr~~ii~~~~~yHG~t 155 (451)
T PRK06918 132 VKIARKYTKRQGIISFSRGFHGRT 155 (451)
T ss_pred HHHHHHHhCCCcEEEECCCcCccc
Confidence 87432 22367888888886443
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=1 Score=42.03 Aligned_cols=157 Identities=11% Similarity=0.131 Sum_probs=85.8
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC-----CCCCCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP-----YIYPDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~-----~~Yp~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..+- ..++ ..+.+.+++.+ +... ..|+.+...+|-+.|++...-. .+.++++++++++.+.+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~A 131 (441)
T PRK05769 52 DGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAA 131 (441)
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHH
Confidence 456778887763 2333 34677777765 3321 1233333456667777665421 36899999999999998
Q ss_pred HHHhc--CCCCeEEEcCCCChhHHHHH-HHCCC-------------EEEEecCCCCCC-----C--------CHHHHHH-
Q 025730 163 MRCVL--DPGDKIVDCPPTFTMYEFDA-AVNGA-------------AVVKVPRKSDFS-----L--------NVELIAD- 212 (249)
Q Consensus 163 ~~~~~--~pGd~Vlv~~P~y~~~~~~~-~~~G~-------------~v~~v~~~~~~~-----i--------d~e~l~~- 212 (249)
++... ...++|+...-+|......+ ...|. .+..++....+. - +++.+++
T Consensus 132 lklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 211 (441)
T PRK05769 132 IKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDY 211 (441)
T ss_pred HHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHH
Confidence 87431 22367888887776443322 11121 123333211111 0 1234555
Q ss_pred hhc----cCCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 213 AVE----REKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 213 ~i~----~~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.++ ..++.+|++.-...-.|...++. +.+..+|++||
T Consensus 212 ~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g 255 (441)
T PRK05769 212 LFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYG 255 (441)
T ss_pred HHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 222 13456666544445567765544 44778898876
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.11 Score=47.41 Aligned_cols=109 Identities=16% Similarity=0.016 Sum_probs=68.1
Q ss_pred HcCCC-CCCEEEeCCHHHHHHHHHHHhc---CCCCeEEEcCCCChhHHHHHHHCCCEEEEecC---CCCCCCCHHHHHHh
Q 025730 141 DSGLE-SDHILVGCGADELIDLIMRCVL---DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR---KSDFSLNVELIADA 213 (249)
Q Consensus 141 ~~~~~-~~~I~vt~Ga~~~l~~~~~~~~---~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~---~~~~~id~e~l~~~ 213 (249)
..|+. ....++.+.+|..-..+....+ ..++.|+.+.-.+..-...++.+|.+++.|+. .+....|++.+++.
T Consensus 68 ~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~ 147 (389)
T PF05889_consen 68 LAGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAK 147 (389)
T ss_dssp HTTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHH
T ss_pred HcCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHH
Confidence 34764 3456777777654443333333 35688888877776656667779999999982 23344578888888
Q ss_pred hcc--CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 214 VER--EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 214 i~~--~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+++ .+..+.++++++--.|..-++.+.+++||+++|
T Consensus 148 i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~ 185 (389)
T PF05889_consen 148 IEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYD 185 (389)
T ss_dssp HHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT
T ss_pred HHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcC
Confidence 864 345677788877666777334788999999986
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.77 Score=42.81 Aligned_cols=157 Identities=10% Similarity=0.119 Sum_probs=87.9
Q ss_pred CCCCeeeccCCC--CCC-CCCHHHHHHHHh-ccCCC-----CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPY-GPPPEVREALGQ-LKFPY-----IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~-~~p~~v~~al~~-~~~~~-----~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...+|+..+- ..+ -..|.+.+++.+ +.... .+..+...+|-+.|++..+-..+.++++++++++.+.++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~Al 120 (428)
T PRK07986 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAM 120 (428)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHH
Confidence 456678887652 333 245778888765 33211 123233455667777666533468999999999999988
Q ss_pred HHhcC-------CCCeEEEcCCCChhHHHHHHH-CCC-------------EEEEecCCC-C----C-CCCHHHHHHhhcc
Q 025730 164 RCVLD-------PGDKIVDCPPTFTMYEFDAAV-NGA-------------AVVKVPRKS-D----F-SLNVELIADAVER 216 (249)
Q Consensus 164 ~~~~~-------pGd~Vlv~~P~y~~~~~~~~~-~G~-------------~v~~v~~~~-~----~-~id~e~l~~~i~~ 216 (249)
+.... ...+|+...-+|......+.. .|. .+..++... . + .-|++++++.++.
T Consensus 121 klAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~ 200 (428)
T PRK07986 121 KMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAA 200 (428)
T ss_pred HHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHh
Confidence 75421 236788888888643222111 111 112232111 1 1 1256777777752
Q ss_pred --CCceEEEEcCC-CCccccCCChH---HHHHHHhhhhC
Q 025730 217 --EKPKCIFLTSP-NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 217 --~~~k~i~l~~P-nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.++.+|++.-. ..-.|...++. +.+.++|++||
T Consensus 201 ~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g 239 (428)
T PRK07986 201 HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREG 239 (428)
T ss_pred CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence 23455554432 44456654443 55788999886
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.7 Score=40.74 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=93.7
Q ss_pred CCCCeeeccCCCC--CCC-CCHHHHHHHHh-cc----CCCCC-CCcChHHHHHHHHHHcCC-CCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANEN--PYG-PPPEVREALGQ-LK----FPYIY-PDPESRRLRAALAKDSGL-ESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~~--~~~-~p~~v~~al~~-~~----~~~~Y-p~~g~~~lr~~la~~~~~-~~~~I~vt~Ga~~~l~~~ 162 (249)
.+...|||..+.+ .++ ..|.+.+++.+ +. ...+| .....-++-+.|.+.+.- ..+.++++++++++.+.+
T Consensus 54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~A 133 (447)
T COG0160 54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAA 133 (447)
T ss_pred CCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHH
Confidence 4567899988533 332 56888888875 32 12333 223345566666666654 456799999999999999
Q ss_pred HHHh--cCCCCeEEEcCCCCh-hHHHHHHHCC-------------CEEEEecCCCC----CCC--------CHHHHHHhh
Q 025730 163 MRCV--LDPGDKIVDCPPTFT-MYEFDAAVNG-------------AAVVKVPRKSD----FSL--------NVELIADAV 214 (249)
Q Consensus 163 ~~~~--~~pGd~Vlv~~P~y~-~~~~~~~~~G-------------~~v~~v~~~~~----~~i--------d~e~l~~~i 214 (249)
++.. ......|+...-.|. .......+.| ..+..+|.... +.. ..+.++..+
T Consensus 134 iKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i 213 (447)
T COG0160 134 IKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERAL 213 (447)
T ss_pred HHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHH
Confidence 8753 223366777777774 2222222222 22455553221 111 234455544
Q ss_pred cc-----CCceEEEEcCCCCccccCCChHHH---HHHHhhhhC
Q 025730 215 ER-----EKPKCIFLTSPNNPDGRFSWTSSW---IWGISSEHN 249 (249)
Q Consensus 215 ~~-----~~~k~i~l~~PnNPTG~~~~~~e~---i~~i~~~~~ 249 (249)
.. .++.++++---..-.|.+.++.++ +.++|++||
T Consensus 214 ~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~g 256 (447)
T COG0160 214 FDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHG 256 (447)
T ss_pred HhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 32 235667666667888988888855 678999986
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.6 Score=43.43 Aligned_cols=157 Identities=10% Similarity=0.137 Sum_probs=87.4
Q ss_pred CCCCeeeccCCC--CCC-CCCHHHHHHHHh-ccCC----C-CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPY-GPPPEVREALGQ-LKFP----Y-IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~-~~p~~v~~al~~-~~~~----~-~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...+|+..+. ..+ -..+.+.+++.+ +... . .+......++-+.+++.++-.-+.++++++++++.+.++
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Al 122 (427)
T TIGR00508 43 DGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVAL 122 (427)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHH
Confidence 345678887653 222 245677777765 3321 1 123333556777777776543468999999999999888
Q ss_pred HHhcC-------CC-CeEEEcCCCChhHHHHHHH-CCCE-------------EEEecCC-CCCC-----CCHHHHHHhhc
Q 025730 164 RCVLD-------PG-DKIVDCPPTFTMYEFDAAV-NGAA-------------VVKVPRK-SDFS-----LNVELIADAVE 215 (249)
Q Consensus 164 ~~~~~-------pG-d~Vlv~~P~y~~~~~~~~~-~G~~-------------v~~v~~~-~~~~-----id~e~l~~~i~ 215 (249)
+.... +| .+|+...-+|......+.. .|.. +..++.. ..+. -|++++++.+.
T Consensus 123 klAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~ 202 (427)
T TIGR00508 123 KMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLME 202 (427)
T ss_pred HHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHH
Confidence 75421 23 6788888888643322221 1211 1122210 1111 14667777775
Q ss_pred c--CCceEEEEcCC-CCccccCCChH---HHHHHHhhhhC
Q 025730 216 R--EKPKCIFLTSP-NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 216 ~--~~~k~i~l~~P-nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+ .+..+|++.-. .+-.|....+. +.+.++|++||
T Consensus 203 ~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~ 242 (427)
T TIGR00508 203 LHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYD 242 (427)
T ss_pred hcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence 2 24455554432 55556655444 44788999885
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.85 Score=42.50 Aligned_cols=157 Identities=12% Similarity=0.143 Sum_probs=88.6
Q ss_pred CCCCeeeccCC--CCCC-CCCHHHHHHHHh-ccCC---C--CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPY-GPPPEVREALGQ-LKFP---Y--IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~-~~p~~v~~al~~-~~~~---~--~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
++...+|+..+ ...+ -..|.+.+++.+ +... . .|..+...+|-+.|++.+....+.++++++++++.+.++
T Consensus 42 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~Al 121 (429)
T PRK06173 42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAM 121 (429)
T ss_pred CCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHH
Confidence 45667888665 2222 234677777765 3221 1 233334566777777776433468999999999999988
Q ss_pred HHhcC-------CC-CeEEEcCCCChhHHHHHH-HCCC-------------EEEEecCCC-CCC-----CCHHHHHHhhc
Q 025730 164 RCVLD-------PG-DKIVDCPPTFTMYEFDAA-VNGA-------------AVVKVPRKS-DFS-----LNVELIADAVE 215 (249)
Q Consensus 164 ~~~~~-------pG-d~Vlv~~P~y~~~~~~~~-~~G~-------------~v~~v~~~~-~~~-----id~e~l~~~i~ 215 (249)
+.... +| .+|+...-+|......+. ..|. .+..+|... .+. -+++.+++.++
T Consensus 122 klAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~ 201 (429)
T PRK06173 122 KMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLE 201 (429)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHH
Confidence 75421 33 578888887764322111 1110 112233111 111 13666777774
Q ss_pred c--CCceEEEEcCC-CCccccCCChH---HHHHHHhhhhC
Q 025730 216 R--EKPKCIFLTSP-NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 216 ~--~~~k~i~l~~P-nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
. .++.+|++.-- ..-.|...++. +.+.++|++||
T Consensus 202 ~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g 241 (429)
T PRK06173 202 QKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYG 241 (429)
T ss_pred hCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcC
Confidence 2 34666665532 56567775565 44778899886
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.2 Score=41.62 Aligned_cols=91 Identities=11% Similarity=0.197 Sum_probs=56.6
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC-----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP-----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~-----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..+ ...++ ..|.+.+++.+ +... ..|..+...+|-+.|++...-..+.++++++++++.+.++
T Consensus 28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~Al 107 (443)
T PRK07483 28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAAL 107 (443)
T ss_pred CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHH
Confidence 45677888776 33333 45677777765 3321 1133333456667777665433468999999999999888
Q ss_pred HHhcC-------CC-CeEEEcCCCChhH
Q 025730 164 RCVLD-------PG-DKIVDCPPTFTMY 183 (249)
Q Consensus 164 ~~~~~-------pG-d~Vlv~~P~y~~~ 183 (249)
+.... +| .+|+...-.|...
T Consensus 108 klAr~~~~~~g~~~r~~Ii~~~~~YHG~ 135 (443)
T PRK07483 108 KLARQYFVEIGQPQRRHFIARRQSYHGN 135 (443)
T ss_pred HHHHHHHHhcCCCCCcEEEEECCCcCCc
Confidence 75321 33 5688877777543
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.5 Score=41.11 Aligned_cols=157 Identities=13% Similarity=0.174 Sum_probs=85.7
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCCC------CCCCcChHHHHHHHHHHcC-CCCCCEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFPY------IYPDPESRRLRAALAKDSG-LESDHILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~~------~Yp~~g~~~lr~~la~~~~-~~~~~I~vt~Ga~~~l~~ 161 (249)
++...||+..+ ...++ ..|.+.+++.+ +.... .++.+...+|-+.|++.++ -..+.++++++++++.+.
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~ 119 (449)
T PRK07481 40 DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVET 119 (449)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHH
Confidence 45567888665 22332 44677777765 33211 2333334567777777763 123579999999999999
Q ss_pred HHHHhcC-------CC-CeEEEcCCCChhHHHHHHH-CCC------------EEEEecCCCC----CC-CCHHHH-----
Q 025730 162 IMRCVLD-------PG-DKIVDCPPTFTMYEFDAAV-NGA------------AVVKVPRKSD----FS-LNVELI----- 210 (249)
Q Consensus 162 ~~~~~~~-------pG-d~Vlv~~P~y~~~~~~~~~-~G~------------~v~~v~~~~~----~~-id~e~l----- 210 (249)
+++.... +| .+|+...-.|......+.. .|. .+..++.... +. .|++.+
T Consensus 120 AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~ 199 (449)
T PRK07481 120 ALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICA 199 (449)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHH
Confidence 8875321 33 5788888888654332211 110 1222321111 11 134333
Q ss_pred ---HHhhc---cCCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 211 ---ADAVE---REKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 211 ---~~~i~---~~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++.+. ..++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 200 ~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g 247 (449)
T PRK07481 200 RLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHG 247 (449)
T ss_pred HHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcC
Confidence 33332 13466666554344457765555 45788999886
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.35 Score=46.93 Aligned_cols=115 Identities=20% Similarity=0.212 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCCCCCEEEeCCH---HHHHHHHHHHhcCCC----CeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCC
Q 025730 134 LRAALAKDSGLESDHILVGCGA---DELIDLIMRCVLDPG----DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN 206 (249)
Q Consensus 134 lr~~la~~~~~~~~~I~vt~Ga---~~~l~~~~~~~~~pG----d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id 206 (249)
|.+.|+...|.+.-..-.-+|+ -.+|..+-..+...| ...+++...++.-...++++|.+++.|..+.++.+|
T Consensus 587 Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id 666 (1001)
T KOG2040|consen 587 LEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNID 666 (1001)
T ss_pred HHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCcc
Confidence 4444444446443223333333 334444333333444 357888888988888899999999999998999999
Q ss_pred HHHHHHhhccC--CceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 207 VELIADAVERE--KPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 207 ~e~l~~~i~~~--~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
..+|.+..++. +-.+++++-|+. -|+.-+..+.+-.+.++||
T Consensus 667 ~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehG 710 (1001)
T KOG2040|consen 667 MVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHG 710 (1001)
T ss_pred HHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcC
Confidence 99999988643 456888888874 4655333455555666664
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=1.2 Score=46.02 Aligned_cols=90 Identities=11% Similarity=-0.013 Sum_probs=60.0
Q ss_pred CCCCeeeccCCCCCCC-CCHHHHHHHHh-cc---CCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhc
Q 025730 93 KPEDIVKIDANENPYG-PPPEVREALGQ-LK---FPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVL 167 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~-~p~~v~~al~~-~~---~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~ 167 (249)
.+...||+..+...++ ..|.+.+++.+ +. ....|..+...+|-+.|++.+.-.-+.+.++++++|+.+.+++...
T Consensus 622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr 701 (1013)
T PRK06148 622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLAR 701 (1013)
T ss_pred CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcCCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHH
Confidence 3566788877754454 45778887765 33 2234554445667777777765334678999999999999988542
Q ss_pred --CCCCeEEEcCCCChh
Q 025730 168 --DPGDKIVDCPPTFTM 182 (249)
Q Consensus 168 --~pGd~Vlv~~P~y~~ 182 (249)
....+|+...-+|..
T Consensus 702 ~~tGr~~ii~~~~~YHG 718 (1013)
T PRK06148 702 AHTGQRDAIVLDHAYHG 718 (1013)
T ss_pred HhcCCCeEEEEcCCccC
Confidence 223678888877753
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=2.8 Score=42.87 Aligned_cols=138 Identities=10% Similarity=0.029 Sum_probs=84.0
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-ccCCCCC-C---C--cC----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHH---HHH
Q 025730 98 VKIDANENPYGPPPEVREALGQ-LKFPYIY-P---D--PE----SRRLRAALAKDSGLESDHILVGCGADELID---LIM 163 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~~~~~~Y-p---~--~g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~---~~~ 163 (249)
.-++.|.-+.-.|..+.+.+.+ -.+...| | + +| .-++...++++.|++-.|--+-.|++.+-+ ++.
T Consensus 82 ~fiG~G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~ 161 (954)
T PRK12566 82 SLIGMGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAK 161 (954)
T ss_pred ccccccccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHH
Confidence 4556666666677777566554 3333344 3 2 23 346788889999987655555456554444 333
Q ss_pred HHhcCCCCeEEEcCCCChhHHHHH----HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 164 RCVLDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 164 ~~~~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
+..-....+|+++.-.++.+.... +..|.+++. +++++.++ .++-+|++.+||. .|.+ .+.+
T Consensus 162 ~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-----------~~~~~~~~-~~~~~v~vq~P~~-~G~i-~d~~ 227 (954)
T PRK12566 162 RVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-----------DAVDNLAA-HAVFGALLQYPDT-HGEI-RDLR 227 (954)
T ss_pred HHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-----------cchhhcCC-CCEEEEEEECCCC-ceEE-ccHH
Confidence 321112468999999998666543 346777764 33344444 4688898999984 7888 4555
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+..+++++|
T Consensus 228 ~i~~~~h~~g 237 (954)
T PRK12566 228 PLIDQLHGQQ 237 (954)
T ss_pred HHHHHHHHcC
Confidence 6666676654
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=3 Score=39.30 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=84.4
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCCC-----CCCCcChHHHHHHHHHHcCCC--C-CCEEEe-CCHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFPY-----IYPDPESRRLRAALAKDSGLE--S-DHILVG-CGADELI 159 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~~-----~Yp~~g~~~lr~~la~~~~~~--~-~~I~vt-~Ga~~~l 159 (249)
.+...||+..+- ..++ ..|.+.+++.+ +.... .|+.+...+|-+.+.+.+.-. . +.++++ ++++++.
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAv 140 (464)
T PRK06938 61 EGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAV 140 (464)
T ss_pred CCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHH
Confidence 456778886663 2232 45778888765 32111 233333445556666554311 1 356554 7889999
Q ss_pred HHHHHHhc-CCC-CeEEEcCCCChhHHHHHHH-CCC------------EEEEecCCCCCC------------CCHHHHHH
Q 025730 160 DLIMRCVL-DPG-DKIVDCPPTFTMYEFDAAV-NGA------------AVVKVPRKSDFS------------LNVELIAD 212 (249)
Q Consensus 160 ~~~~~~~~-~pG-d~Vlv~~P~y~~~~~~~~~-~G~------------~v~~v~~~~~~~------------id~e~l~~ 212 (249)
+.+++... ..| .+|+...-+|......+.. .|. .+..++....+. .+++.+++
T Consensus 141 e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~ 220 (464)
T PRK06938 141 EAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLEN 220 (464)
T ss_pred HHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHH
Confidence 98887532 133 6788888777643322221 110 123343221111 13677777
Q ss_pred hhcc-----CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 213 AVER-----EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 213 ~i~~-----~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.+++ .++.+|++.--..--|.+.++. +.+.++|++||
T Consensus 221 ~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~g 265 (464)
T PRK06938 221 LLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAG 265 (464)
T ss_pred HHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 7753 1355665543233347665555 45788999986
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.063 Score=48.66 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=7.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh------hHHHHHHHCCCEEEEecCCCCCCC
Q 025730 132 RRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT------MYEFDAAVNGAAVVKVPRKSDFSL 205 (249)
Q Consensus 132 ~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~------~~~~~~~~~G~~v~~v~~~~~~~i 205 (249)
..+.+.++...| .+..+++|+...++.+++.+++ .|.+|++.--.-. .+..+.+..|++++.|-..+ .-
T Consensus 50 ~~v~~ll~~ltg--AeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN--~t 124 (367)
T PF03841_consen 50 AHVEELLCELTG--AEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN--RT 124 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc--cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc--cc
Confidence 345666777777 4567777888888888888775 5677776533221 34566677899999887432 34
Q ss_pred CHHHHHHhhccCCceEEEEcCCCCcc--ccC-CChHHHHHHHhhhhC
Q 025730 206 NVELIADAVEREKPKCIFLTSPNNPD--GRF-SWTSSWIWGISSEHN 249 (249)
Q Consensus 206 d~e~l~~~i~~~~~k~i~l~~PnNPT--G~~-~~~~e~i~~i~~~~~ 249 (249)
.+++++++++ ++|.+++-.|++|-. |.. ....+.+..++++||
T Consensus 125 ~~~Dye~AI~-e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~ 170 (367)
T PF03841_consen 125 HLSDYEKAIT-ENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHG 170 (367)
T ss_dssp -------------------------------------HHHHHHHHHT
T ss_pred cccccccccc-ccccccccccccccccccccccccHHHHHHHHhhcC
Confidence 5788999998 799999989988863 322 113356677888875
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=91.82 E-value=4 Score=38.51 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=86.5
Q ss_pred CCCCeeeccCCCC--CCC-CCHHHHHHHHhc--c----CCCCCCCcChHHHHHHHHH----HcCCCCCCEEEeCCHHHHH
Q 025730 93 KPEDIVKIDANEN--PYG-PPPEVREALGQL--K----FPYIYPDPESRRLRAALAK----DSGLESDHILVGCGADELI 159 (249)
Q Consensus 93 ~~~~~I~L~~~~~--~~~-~p~~v~~al~~~--~----~~~~Yp~~g~~~lr~~la~----~~~~~~~~I~vt~Ga~~~l 159 (249)
++...||+..+-. .++ ..+.+.+++.+- . ....|+.....+|-+.+++ ...-..+.++++++++|+.
T Consensus 56 dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAv 135 (464)
T TIGR00699 56 DGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDAN 135 (464)
T ss_pred CCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhcccccCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHH
Confidence 4567788877632 222 457777777641 1 1122333334445555544 3322236899999999999
Q ss_pred HHHHHHhcC--------------------------CC---CeEEEcCCCChhHHHHHH-HCCCE-----------EEEec
Q 025730 160 DLIMRCVLD--------------------------PG---DKIVDCPPTFTMYEFDAA-VNGAA-----------VVKVP 198 (249)
Q Consensus 160 ~~~~~~~~~--------------------------pG---d~Vlv~~P~y~~~~~~~~-~~G~~-----------v~~v~ 198 (249)
+.+++.... +| .+|+...-+|......+. ..|.. +..+|
T Consensus 136 E~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p 215 (464)
T TIGR00699 136 ELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAP 215 (464)
T ss_pred HHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecC
Confidence 999885411 11 268888888864333222 12211 11222
Q ss_pred CCC-C--C-----------CCCHHHHHHhhcc--CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 199 RKS-D--F-----------SLNVELIADAVER--EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 199 ~~~-~--~-----------~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
... . + .-+++.+++.+++ .++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 216 ~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g 285 (464)
T TIGR00699 216 FPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHN 285 (464)
T ss_pred CCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 110 0 0 0135667777742 3466666554455567776555 45788999886
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.36 E-value=3.5 Score=38.30 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCCCC--CCEEEeCCHHHHHHHHHHHhc--CC-----C-----C-eEEEcCCCChhHHHHHHHCC---CEE
Q 025730 133 RLRAALAKDSGLES--DHILVGCGADELIDLIMRCVL--DP-----G-----D-KIVDCPPTFTMYEFDAAVNG---AAV 194 (249)
Q Consensus 133 ~lr~~la~~~~~~~--~~I~vt~Ga~~~l~~~~~~~~--~p-----G-----d-~Vlv~~P~y~~~~~~~~~~G---~~v 194 (249)
++-..+.+..|.+. |.|+.-.|+..-++.+..+-- -| | + .+.+.+-+|......+...| -.+
T Consensus 145 ~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c 224 (510)
T KOG0629|consen 145 EVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHC 224 (510)
T ss_pred HHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCcee
Confidence 44445555556655 455554555544444433221 12 1 2 23355566667777788888 688
Q ss_pred EEecCCCCCCCCHHHHHHhhccCCce----E-EEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 195 VKVPRKSDFSLNVELIADAVEREKPK----C-IFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 195 ~~v~~~~~~~id~e~l~~~i~~~~~k----~-i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.|+.++.+.+++++|++.|-..+.+ . |-.+.-+...|.. ++.+.++.+|++|+
T Consensus 225 ~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAF-DdL~~iadiC~k~~ 283 (510)
T KOG0629|consen 225 IKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAF-DDLNGIADICEKHK 283 (510)
T ss_pred EEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeecc-CcHHHHHHHHHhcC
Confidence 99999899999999999988543333 2 2222335677888 88899999999985
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.23 E-value=4.7 Score=37.80 Aligned_cols=139 Identities=15% Similarity=0.209 Sum_probs=79.4
Q ss_pred HHHHHHHHh----ccCCCCC--CCcChHHHHHHHHHHcC-CCCCCEEEeCCHHHHHHHHHHHhc-------CCC-CeEEE
Q 025730 111 PEVREALGQ----LKFPYIY--PDPESRRLRAALAKDSG-LESDHILVGCGADELIDLIMRCVL-------DPG-DKIVD 175 (249)
Q Consensus 111 ~~v~~al~~----~~~~~~Y--p~~g~~~lr~~la~~~~-~~~~~I~vt~Ga~~~l~~~~~~~~-------~pG-d~Vlv 175 (249)
+++.+++.+ +.+...+ ......+|-+.|+++.. -+-++|++++|++++++.+++... +|+ .+++.
T Consensus 63 ~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Is 142 (449)
T COG0161 63 PEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFIS 142 (449)
T ss_pred HHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 566666654 3332222 11226678888888886 446799999999999999987652 233 34777
Q ss_pred cCCCChhHHHHHHH-----------CC---CEEEEecCCC--------CCC----CCHHHHHHhhccC--CceEEEEcCC
Q 025730 176 CPPTFTMYEFDAAV-----------NG---AAVVKVPRKS--------DFS----LNVELIADAVERE--KPKCIFLTSP 227 (249)
Q Consensus 176 ~~P~y~~~~~~~~~-----------~G---~~v~~v~~~~--------~~~----id~e~l~~~i~~~--~~k~i~l~~P 227 (249)
-..+|..-...+.. ++ ..+..++... .+. -..++|++.+... ..-+-+|.-|
T Consensus 143 r~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EP 222 (449)
T COG0161 143 RRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEP 222 (449)
T ss_pred eccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecc
Confidence 77777421111111 11 1122333111 111 2356777777642 2334445555
Q ss_pred -CC-ccccCCChH---HHHHHHhhhhC
Q 025730 228 -NN-PDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 228 -nN-PTG~~~~~~---e~i~~i~~~~~ 249 (249)
-. -.|..+++. +.+++||++||
T Consensus 223 v~g~agG~~~pp~~Yl~~vr~iC~ky~ 249 (449)
T COG0161 223 VVGGAGGMLVPPPGYLKRVREICDKYG 249 (449)
T ss_pred cccccCCcccCChHHHHHHHHHHHHcC
Confidence 33 378877776 56889999986
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.14 E-value=8.4 Score=36.24 Aligned_cols=93 Identities=9% Similarity=0.078 Sum_probs=55.0
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCCC-----CCCCcChHHHHHHHHHHcCCC-C--CCEEEeCCHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFPY-----IYPDPESRRLRAALAKDSGLE-S--DHILVGCGADELID 160 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~~-----~Yp~~g~~~lr~~la~~~~~~-~--~~I~vt~Ga~~~l~ 160 (249)
.+...||+..+- ..++ ..|.+.+++.+ +.... .|+.+...+|-+.|++.+.-. . ..++++++++++.+
T Consensus 56 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve 135 (459)
T PRK06931 56 EGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVE 135 (459)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHH
Confidence 456788887773 2222 45778888775 33211 123333455666666665421 1 23456688999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCChhHHH
Q 025730 161 LIMRCVL--DPGDKIVDCPPTFTMYEF 185 (249)
Q Consensus 161 ~~~~~~~--~pGd~Vlv~~P~y~~~~~ 185 (249)
.+++... ...++|+...-.|.....
T Consensus 136 ~AlklAr~~tgr~~Ii~~~~~yHG~t~ 162 (459)
T PRK06931 136 AAIKLAKTYTGRSNVISFSGGYHGMTH 162 (459)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCccH
Confidence 8887532 233678888888865443
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.54 E-value=5.4 Score=37.31 Aligned_cols=157 Identities=13% Similarity=0.163 Sum_probs=83.4
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHH--HHHh-cc-----CC--CCCCCcChHHHHHHHHHHc-CCCCCCEEEeCCHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVRE--ALGQ-LK-----FP--YIYPDPESRRLRAALAKDS-GLESDHILVGCGADEL 158 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~--al~~-~~-----~~--~~Yp~~g~~~lr~~la~~~-~~~~~~I~vt~Ga~~~ 158 (249)
.+...||+..+ ...++ ..|.+.+ ++.+ +. .. ..|......+|-+.|++.. .-..+.|+++++++|+
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEA 122 (443)
T PRK08297 43 TGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALA 122 (443)
T ss_pred CCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHH
Confidence 34556777655 22332 3456666 6654 32 11 1233333455666666665 2234689999999999
Q ss_pred HHHHHHHhc----------C---C-CCeEEEcCCCChhHHHHHHH-CCCEE-----------EEecCCC------CCC--
Q 025730 159 IDLIMRCVL----------D---P-GDKIVDCPPTFTMYEFDAAV-NGAAV-----------VKVPRKS------DFS-- 204 (249)
Q Consensus 159 l~~~~~~~~----------~---p-Gd~Vlv~~P~y~~~~~~~~~-~G~~v-----------~~v~~~~------~~~-- 204 (249)
.+.+++... . + ..+|+...-+|......+.. .|... ..++... +..
T Consensus 123 ve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (443)
T PRK08297 123 VENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLE 202 (443)
T ss_pred HHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccc
Confidence 999988641 1 1 25788888888644332222 22110 0011000 000
Q ss_pred -C------CHHHHHHhhcc--CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 205 -L------NVELIADAVER--EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 205 -i------d~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
. +++.+++.+.+ .++.+|++.-...-.|.+.++. +.+.++|++||
T Consensus 203 ~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g 259 (443)
T PRK08297 203 EVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHD 259 (443)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 0 23555566642 3566666543333346654554 45788999986
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.9 Score=39.82 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHh-cc-CC-----CCC-C--CcChHHHHHHHHHHcCCCC----CCEEEeCCHHHHHHHHHHHhcCCCCeE
Q 025730 108 GPPPEVREALGQ-LK-FP-----YIY-P--DPESRRLRAALAKDSGLES----DHILVGCGADELIDLIMRCVLDPGDKI 173 (249)
Q Consensus 108 ~~p~~v~~al~~-~~-~~-----~~Y-p--~~g~~~lr~~la~~~~~~~----~~I~vt~Ga~~~l~~~~~~~~~pGd~V 173 (249)
..-|.|.+|+.+ ++ ++ .+- . +.-..+|.+.||++++-+. ...++.|-++ |..+.+. -||-++
T Consensus 185 s~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDst--LftLak~--lpgcei 260 (570)
T KOG1360|consen 185 SRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDST--LFTLAKK--LPGCEI 260 (570)
T ss_pred cCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchH--HHHHHHH--CCCcEE
Confidence 345788888876 32 11 111 1 1124679999999987332 2334444443 3444442 366666
Q ss_pred EEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc---CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 174 VDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 174 lv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+-..--+.....-++..++.=....- -|++.|++.++. .-+|+|-+.+.+.-+|.+ .+.+++-.++++||
T Consensus 261 ~SD~gNHASMI~GIrns~v~K~IFrH-----ND~~hL~~lL~~~~~svPKivAFEtVhSM~Gav-cpleelcDvah~yG 333 (570)
T KOG1360|consen 261 FSDEGNHASMIQGIRNSRVPKHIFRH-----NDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAV-CPLEELCDVAHKYG 333 (570)
T ss_pred eccccchHHHHHHhhhcCCcceeecc-----CCHHHHHHHHHhCCCCCCceEEEeeeeccCCCc-CCHHHHHHHHHHhC
Confidence 55554454444444444433222221 268888888764 347899999999999999 67777777888875
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=89.18 E-value=5.4 Score=37.09 Aligned_cols=151 Identities=13% Similarity=0.152 Sum_probs=78.5
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCCCCCCCc--ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFPYIYPDP--ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~~~Yp~~--g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.+...||+..+- ..++ ..|.+.+++.+ +.....|... ...+|-+.|++.+.- .+.+.++++++++.+.+++..
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklA 124 (431)
T PRK06209 46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCNFTRPSAIELDAAESFLELIDG-ADMVKFCKNGSDATSAAVRLA 124 (431)
T ss_pred CCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHhCCc-cceEEEecCHHHHHHHHHHHH
Confidence 456678887663 2333 45778888775 4433333322 223567777777631 368999999999999998843
Q ss_pred c-CCC-CeEEEc-CCCChhHHHHHHHCCCEEE--Eec-----CCCCC-CCCHHHHHHhhcc--CCceEEEEcCCCCcccc
Q 025730 167 L-DPG-DKIVDC-PPTFTMYEFDAAVNGAAVV--KVP-----RKSDF-SLNVELIADAVER--EKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 167 ~-~pG-d~Vlv~-~P~y~~~~~~~~~~G~~v~--~v~-----~~~~~-~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~ 233 (249)
. -.| .+|+.. .-.|..+.... .|.... .++ ....+ .-|++.+++.+++ .++.+|+ .-|- .|.
T Consensus 125 r~~tgr~~i~~~~~~~~h~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi-~Epv--~g~ 199 (431)
T PRK06209 125 RAYTGRDLVARCADHPFFSTDDWF--IGTTPMSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVI-LEPA--TAD 199 (431)
T ss_pred HHHhCCCeEEEeccCccccccccc--cccCCCCCCCChhHhccccccCCCCHHHHHHHHHhCCCCEEEEE-Eccc--cCC
Confidence 2 124 345543 22221111000 111100 000 00001 1278899988853 2344555 4442 233
Q ss_pred CCCh--HHHHHHHhhhhC
Q 025730 234 FSWT--SSWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~--~e~i~~i~~~~~ 249 (249)
..+. .+.+.++|++||
T Consensus 200 ~~~~~~l~~l~~lc~~~g 217 (431)
T PRK06209 200 EPQDGFLHEVRRLCHENG 217 (431)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 3222 255788999886
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=88.61 E-value=6.1 Score=36.77 Aligned_cols=157 Identities=11% Similarity=0.140 Sum_probs=81.5
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHH--HHHHh-ccCC-----C--CCCCcChHHHHHHHHHHcC-CCCCCEEEeCCHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVR--EALGQ-LKFP-----Y--IYPDPESRRLRAALAKDSG-LESDHILVGCGADEL 158 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~--~al~~-~~~~-----~--~Yp~~g~~~lr~~la~~~~-~~~~~I~vt~Ga~~~ 158 (249)
.+...||+..+- ..++ ..|.+. +++.+ +... . .+......++-+.|++... -..+.++++++++++
T Consensus 36 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEA 115 (431)
T TIGR03251 36 DGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALA 115 (431)
T ss_pred CCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHH
Confidence 345567775552 2232 345666 66654 2211 1 1222223445555555542 123689999999999
Q ss_pred HHHHHHHhc----------C-C---CCeEEEcCCCChhHHHHHH-HCCCE-EE----------E--ec-----CCC-CCC
Q 025730 159 IDLIMRCVL----------D-P---GDKIVDCPPTFTMYEFDAA-VNGAA-VV----------K--VP-----RKS-DFS 204 (249)
Q Consensus 159 l~~~~~~~~----------~-p---Gd~Vlv~~P~y~~~~~~~~-~~G~~-v~----------~--v~-----~~~-~~~ 204 (249)
.+.+++... . + +.+|+...-+|......+. ..|.. .. . .| .+. +..
T Consensus 116 ve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 195 (431)
T TIGR03251 116 VENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLD 195 (431)
T ss_pred HHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccc
Confidence 999887542 0 1 3679888888864332222 22211 00 0 11 000 000
Q ss_pred -------CCHHHHHHhhcc--CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 205 -------LNVELIADAVER--EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 205 -------id~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
-+++++++.+.+ .++.+|++.-...-.|.+..+. +.+.++|++||
T Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g 252 (431)
T TIGR03251 196 QVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHD 252 (431)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcC
Confidence 124455555532 4567777664455567765554 45788999986
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=88.22 E-value=5.1 Score=36.00 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=85.2
Q ss_pred CCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC-C----CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 94 PEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP-Y----IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 94 ~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~-~----~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
+...+|+..+ ...++ ..|.+.+++.+ +... + .+..+...+|-+.|.+.++-..+.++++++++++++.+++
T Consensus 15 G~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alk 94 (339)
T PF00202_consen 15 GREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALK 94 (339)
T ss_dssp SEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHH
Confidence 4567888654 34443 34677777765 3221 1 1222234577778888774445789999999999999998
Q ss_pred Hhc-------CCC-CeEEEcCCCChhHHHHH-HHCC------------CEEEEecCCCCCC-----CCHHHHHH---hhc
Q 025730 165 CVL-------DPG-DKIVDCPPTFTMYEFDA-AVNG------------AAVVKVPRKSDFS-----LNVELIAD---AVE 215 (249)
Q Consensus 165 ~~~-------~pG-d~Vlv~~P~y~~~~~~~-~~~G------------~~v~~v~~~~~~~-----id~e~l~~---~i~ 215 (249)
... .+| .+|+...-+|......+ ...+ ..+..+|..+... -..+.+++ ...
T Consensus 95 la~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (339)
T PF00202_consen 95 LARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALN 174 (339)
T ss_dssp HHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhc
Confidence 655 223 78888888886322211 1111 2345555421110 00111222 222
Q ss_pred cCCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 216 REKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 216 ~~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
..++.+|++.--..-.|....+. +.+.++|++||
T Consensus 175 ~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~g 211 (339)
T PF00202_consen 175 ADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHG 211 (339)
T ss_dssp GGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT
T ss_pred CCcEEEEEEeccccccCccccccchhhehcccccccc
Confidence 24555666543344456665554 55788999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.29 E-value=8.4 Score=32.62 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=63.0
Q ss_pred EEEeCCHHHHHHHHHHHhcCCCCeEE--------------EcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhh
Q 025730 149 ILVGCGADELIDLIMRCVLDPGDKIV--------------DCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAV 214 (249)
Q Consensus 149 I~vt~Ga~~~l~~~~~~~~~pGd~Vl--------------v~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i 214 (249)
+.+-+|+.++...+..++ +.|-.|. .-.|........++..|..++.........-.++++.+++
T Consensus 4 ~aL~SGGKDS~~Al~~a~-~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l 82 (223)
T COG2102 4 IALYSGGKDSFYALYLAL-EEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEELKEAL 82 (223)
T ss_pred EEEEecCcHHHHHHHHHH-HcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHHHHHHH
Confidence 566788888877777654 4453332 1111112345566778999888886554555688998888
Q ss_pred ccCCceEEEEcCCCCccccCCChH--HHHHHHhhhhC
Q 025730 215 EREKPKCIFLTSPNNPDGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 215 ~~~~~k~i~l~~PnNPTG~~~~~~--e~i~~i~~~~~ 249 (249)
+.-+...|+ +|.+++.. +++..+|++.|
T Consensus 83 ~~l~~d~iv-------~GaI~s~yqk~rve~lc~~lG 112 (223)
T COG2102 83 RRLKVDGIV-------AGAIASEYQKERVERLCEELG 112 (223)
T ss_pred HhCcccEEE-------EchhhhHHHHHHHHHHHHHhC
Confidence 766667887 89888776 45888998754
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.44 E-value=11 Score=34.82 Aligned_cols=142 Identities=14% Similarity=0.112 Sum_probs=85.0
Q ss_pred CCCeeeccCCC-CCCCCCHHHHHH----HHhccCC-----CCCCCc-ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANE-NPYGPPPEVREA----LGQLKFP-----YIYPDP-ESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~-~~~~~p~~v~~a----l~~~~~~-----~~Yp~~-g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
+.++++|+... -.+...+.+++. +++...+ -.|.+. -..+|.+.||+++|.+ +.|+...| -..+..+
T Consensus 93 G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E-~aivYs~g-F~ti~S~ 170 (467)
T KOG1358|consen 93 GKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTE-DAIVYSYG-FSTIESA 170 (467)
T ss_pred CceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCc-ceeeeccc-cchhhhc
Confidence 44666666532 223344555543 3332211 235543 3567999999999963 56777666 4577778
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC-----------Cc-eEEEEcCCCCc
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE-----------KP-KCIFLTSPNNP 230 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~-----------~~-k~i~l~~PnNP 230 (249)
+.++++.||.+.+..-.......-.+...-++++... .|.+.++..+.+. .+ +.|++.----+
T Consensus 171 ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkh-----ndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N 245 (467)
T KOG1358|consen 171 IPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKH-----NDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYAN 245 (467)
T ss_pred chhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecC-----CCHHHHHHhccCcchhhhhccccccceEEEEEEeeccC
Confidence 8899999999998876665555555656666666653 2556666554311 11 23333334456
Q ss_pred cccCCChHHHHH
Q 025730 231 DGRFSWTSSWIW 242 (249)
Q Consensus 231 TG~~~~~~e~i~ 242 (249)
||.+.+..++++
T Consensus 246 ~g~i~pl~~iv~ 257 (467)
T KOG1358|consen 246 TGDICPLPEIVK 257 (467)
T ss_pred CCcccccHHHHH
Confidence 898866555543
|
|
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.67 E-value=13 Score=33.05 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=55.3
Q ss_pred CCCCCEEE-eCCHHHHHHHHHHHhcCCCCeEEEcCC-CCh-hHHHHHHHCCCEEEEecCCCCCCC-CHHHHHHhhccCCc
Q 025730 144 LESDHILV-GCGADELIDLIMRCVLDPGDKIVDCPP-TFT-MYEFDAAVNGAAVVKVPRKSDFSL-NVELIADAVEREKP 219 (249)
Q Consensus 144 ~~~~~I~v-t~Ga~~~l~~~~~~~~~pGd~Vlv~~P-~y~-~~~~~~~~~G~~v~~v~~~~~~~i-d~e~l~~~i~~~~~ 219 (249)
+.+...++ .+++.-+|-+++-+-. .|=++++.-| +.. ......+.+|++++.+|...++.. -.+.+++...+..-
T Consensus 59 l~pG~tIVE~TSGNTGI~LA~vaa~-~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~ 137 (300)
T COG0031 59 LKPGGTIVEATSGNTGIALAMVAAA-KGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPG 137 (300)
T ss_pred CCCCCEEEEcCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCC
Confidence 55554443 4444557776665543 3533333333 443 677788889999999996333111 23333334442222
Q ss_pred eEEEE---cCCCCccccCCChHHHHHH
Q 025730 220 KCIFL---TSPNNPDGRFSWTSSWIWG 243 (249)
Q Consensus 220 k~i~l---~~PnNPTG~~~~~~e~i~~ 243 (249)
+++++ .||.||-.+......+++.
T Consensus 138 ~~~~~~Qf~NpaN~~aH~~tT~~EI~~ 164 (300)
T COG0031 138 YAVWLNQFENPANPEAHYETTGPEIWQ 164 (300)
T ss_pred ceEchhhcCCCccHHHHHhhhHHHHHH
Confidence 46765 4788887777555555544
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.04 E-value=8.6 Score=36.01 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=69.1
Q ss_pred CCCCCCHHHHHHHHhccC--C-CCC--CCc-ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCC
Q 025730 105 NPYGPPPEVREALGQLKF--P-YIY--PDP-ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178 (249)
Q Consensus 105 ~~~~~p~~v~~al~~~~~--~-~~Y--p~~-g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P 178 (249)
+..+..+.+.+++..... . .+- ... ...++.+.+|+++|. ++.+++.-| -..-...+-+++.||.-|+-..-
T Consensus 152 ~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~-e~a~vF~mG-f~TNs~~~p~l~~~gsLIiSDel 229 (519)
T KOG1357|consen 152 SVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGV-EDAIVFSMG-FATNSMNIPSLLGKGSLIISDEL 229 (519)
T ss_pred cCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCC-cceEEEecc-ccccccCcceeecCCcceeeccc
Confidence 334456777788776321 1 111 111 256899999999996 456777666 44455567778899988888888
Q ss_pred CChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhh
Q 025730 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAV 214 (249)
Q Consensus 179 ~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i 214 (249)
-+.....-++..|+++.....+ |.+.||+.+
T Consensus 230 NHaSi~~GaRLSgAtiRVfkHN-----dm~~LEr~L 260 (519)
T KOG1357|consen 230 NHASLITGARLSGATTRVFRHN-----DMQGLERLL 260 (519)
T ss_pred cchheeccccccCceEEEEecC-----CHHHHHHHH
Confidence 8888888888899988777643 345555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 249 | ||||
| 3ffh_A | 363 | The Crystal Structure Of Histidinol-phosphate Amino | 7e-17 | ||
| 3get_A | 365 | Crystal Structure Of Putative Histidinol-Phosphate | 3e-16 | ||
| 3euc_A | 367 | Crystal Structure Of Histidinol-Phosphate Aminotran | 4e-15 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 3e-14 | ||
| 3hdo_A | 360 | Crystal Structure Of A Histidinol-Phosphate Aminotr | 5e-14 | ||
| 1fg3_A | 356 | Crystal Structure Of L-Histidinol Phosphate Aminotr | 2e-13 | ||
| 3cq4_A | 376 | Histidinol-Phosphate Aminotransferase From Coryneba | 7e-10 | ||
| 3cq5_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 7e-10 | ||
| 3cq6_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 7e-10 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-07 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 2e-07 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 3e-07 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 4e-07 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 6e-07 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 6e-07 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 7e-07 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 7e-07 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 8e-07 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 1e-06 | ||
| 1uu1_A | 335 | Complex Of Histidinol-Phosphate Aminotransferase (H | 2e-05 | ||
| 2f8j_A | 347 | Crystal Structure Of Histidinol-phosphate Aminotran | 2e-05 | ||
| 3ly1_A | 354 | Crystal Structure Of Putative Histidinol-Phosphate | 3e-05 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 2e-04 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 3e-04 | ||
| 1h1c_A | 335 | Histidinol-Phosphate Aminotransferase (Hisc) From T | 3e-04 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 4e-04 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 4e-04 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 4e-04 | ||
| 2egy_A | 397 | Crystal Structure Of Lysn, Alpha-Aminoadipate Amino | 6e-04 |
| >pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363 | Back alignment and structure |
|
| >pdb|3GET|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate Aminotransferase (Np_281508.1) From Campylobacter Jejuni At 2.01 A Resolution Length = 365 | Back alignment and structure |
|
| >pdb|3EUC|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase (Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A Resolution Length = 367 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
| >pdb|3HDO|A Chain A, Crystal Structure Of A Histidinol-Phosphate Aminotransferase From Geobacter Metallireducens Length = 360 | Back alignment and structure |
|
| >pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356 | Back alignment and structure |
|
| >pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Length = 376 | Back alignment and structure |
|
| >pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum In Complex With Pmp Length = 369 | Back alignment and structure |
|
| >pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Holo-Form (Plp Covalently Bound ) Length = 369 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1UU1|A Chain A, Complex Of Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima (Apo-Form) Length = 335 | Back alignment and structure |
|
| >pdb|2F8J|A Chain A, Crystal Structure Of Histidinol-phosphate Aminotransferase (ec 2.6.1.9) (imidazole Acetol-phosphate Transferase) (tm1040) From Thermotoga Maritima At 2.40 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|3LY1|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate Aminotransferase (Yp_050345.1) From Erwinia Carotovora Atroseptica Scri1043 At 1.80 A Resolution Length = 354 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|1H1C|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima Length = 335 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 7e-68
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 4/167 (2%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
+ L L Y+P E + +LG I K+ +NENP G +V I
Sbjct: 6 WKKSLAGLSSYKPGKREEEVMAELGLT--KITKLSSNENPLGTSKKVAAIQANSSVETEI 63
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD + LR +A LE + ++ G DELI+L+ R +LD V PTF Y
Sbjct: 64 YPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQ 123
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+A + GA V ++P D ++E + +A+ EK +++ +PNNP G
Sbjct: 124 NALIEGAEVREIPLLQDGEHDLEGMLNAI-DEKTTIVWICNPNNPTG 169
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 6e-66
Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 4/167 (2%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
L L Y+P EV++ + G K +++K+ +NENP+G PP+ E L Q ++
Sbjct: 4 FNEFLNNLSNYEPGKDIEVIAKEYGVK--EVIKLASNENPFGTPPKAIECLRQNANKAHL 61
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD L++ LA+ +++++I++G G+D++I+ + L+ + + TF MYE
Sbjct: 62 YPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEI 121
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A GA K + + + + +++ K IFL PNNP G
Sbjct: 122 YAKQCGAKCYKTQSITHNLDEFKKLYETH-KDEIKLIFLCLPNNPLG 167
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 1e-64
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQL--K 121
+ IR +R + Y +VK+DA ENPY PP +R L +
Sbjct: 11 ERIIRDDVRAMGAYHV------------PDSHGLVKLDAMENPYRLPPALRSELAARLGE 58
Query: 122 FPY-IYPDPESRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
YP P S LRA L + + + +L+G G+DE+I ++ PG K++ P
Sbjct: 59 VALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPG 118
Query: 180 FTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F MY A G V VP ++DF+L+ + A+ +P ++L PNNP G
Sbjct: 119 FVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTG 171
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 8e-63
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 21/172 (12%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKP--EDIVKIDANENPYGPPPEVREALGQLK 121
R ++R L PYQ R+ V ++ANE P ++ +
Sbjct: 7 TDLARENVRNLTPYQS-----------ARRLGGNGDVWLNANEYPTAVEFQLTQQTLN-- 53
Query: 122 FPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTF 180
YP+ + + + A+ +G++ + +LV GADE I+L++R +PG D I+ CPPT+
Sbjct: 54 ---RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTY 110
Query: 181 TMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
MY A G VP ++ L+++ I+D + + K +++ SPNNP G
Sbjct: 111 GMYSVSAETIGVECRTVPTLDNWQLDLQGISDKL--DGVKVVYVCSPNNPTG 160
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 6e-60
Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 23/180 (12%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ---- 119
D +R LR Y + ++++ NENPY P + L
Sbjct: 11 DLPLREELRGEHAYGA------------PQLNVDIRLNTNENPYPPSEALVADLVATVDK 58
Query: 120 -LKFPYIYPDPESRRLRAALAK------DSGLESDHILVGCGADELIDLIMRCVLDPGDK 172
YP+ ++ LR LA + D++ G++E++ +++ PG
Sbjct: 59 IATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRT 118
Query: 173 IVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+ P+++M+ A + V R +DF +++++ + + ++P +F+T+PNNP G
Sbjct: 119 ALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTG 178
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 4e-56
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 91 GRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHI 149
K +++ +N NP G P + + +K +YPD RRL ++ L+ I
Sbjct: 22 VFKGRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDVNYRRLNKSIENYLKLKDIGI 81
Query: 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL 209
++G GA E+I+L + +KI+ P++ YE +A +G +VV + ++ E
Sbjct: 82 VLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYED 137
Query: 210 IADAVEREKPKCIFLTSPNNPDGRF 234
I + + + + +PNNP+G
Sbjct: 138 IISKI--DDVDSVIIGNPNNPNGGL 160
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 8e-55
Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 5/164 (3%)
Query: 73 KLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYIYPDPES 131
L + LG P+ ++ AN NP G P V+ AL L YPD +
Sbjct: 2 ALFNTAHGGNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDADY 61
Query: 132 RRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNG 191
L ALA+ + + IL G G E I + + + + P F Y A +G
Sbjct: 62 FHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQSG 119
Query: 192 AAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
+ + R++D + I +A+ C+FL +PNNP G
Sbjct: 120 CEIRRWSLREADGWQLTDAILEALT-PDLDCLFLCTPNNPTGLL 162
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 1e-54
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPED---IVKIDANENPYGPPPEVREALGQLKFP 123
+R ++ +K Y P G +P D +K++ NENPY P PEV +A+ + P
Sbjct: 6 LRQNIASMKGYIP-----------GYQPPDIASWIKLNTNENPYPPSPEVVKAILEELGP 54
Query: 124 Y-----IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
IYP S++LR + G + I++ G+DE+++ ++R G++I P
Sbjct: 55 DGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHP 114
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
+++ Y A V GA V DF + R + K FLT+PN P G
Sbjct: 115 SYSYYGTLAEVQGARVRTFGLTGDFRIAGFPE-----RYEGKVFFLTTPNAPLGPS 165
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 1e-52
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 6/155 (3%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALA 139
+ R V + NENP P V+ A+ YP R+ LA
Sbjct: 2 MSVGEAMDTEVRAAAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVMRKLA 61
Query: 140 KDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR 199
+ D++++ G DE D I + V P F Y AV+G ++
Sbjct: 62 EHFSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGL 119
Query: 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
D L+ +A + C+ L +P+NP G+
Sbjct: 120 TDDLLLDPNDLAQV---SRDDCVVLANPSNPTGQA 151
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 2e-52
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 29/174 (16%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPY 124
+ + ++ PY+ + D + NENP+ P ++ + + +
Sbjct: 2 NPLDLIAKRAYPYET-------------EKRDKTYLALNENPFPFPEDLVDEVFRRLNSD 48
Query: 125 ---IYPDPESRRLRAALAK---DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
IY D L + L +++ VG GADE+I ++M D+ V PP
Sbjct: 49 ALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM----FDRSVFFPP 104
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
T++ Y A GA ++VP D + V + +F+ +PNNP G
Sbjct: 105 TYSCYRIFAKAVGAKFLEVPLTKDLRI------PEVNVGEGDVVFIPNPNNPTG 152
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 3e-51
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Query: 90 LGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDH 148
+ +IV G + + L + L YP+P++ LR LAK + ++++
Sbjct: 10 ITPLSSEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPDAGTLRQMLAKRNSVDNNA 69
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
ILV G I + G + + P+F YE + V P D
Sbjct: 70 ILVTNGPTAAFYQIAQAF--RGSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI----- 122
Query: 209 LIADAVEREKPKCIFLTSPNNPDGRF 234
+ +L +PNNPDGR
Sbjct: 123 ---GEADFSNMDFCWLCNPNNPDGRL 145
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 6e-50
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 4/158 (2%)
Query: 79 PILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAA 137
P ++ ++I+ NENP G P+ + A + Y E L
Sbjct: 2 ETQPESAAFTAPS--TDNPIRINFNENPLGMSPKAQAAARDAVVKANRYAKNEILMLGNK 59
Query: 138 LAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKV 197
LA +E+ IL+ G+ E I + ++V T+ E A + G V KV
Sbjct: 60 LAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKV 119
Query: 198 PRKSDFSLNVELIADAV-EREKPKCIFLTSPNNPDGRF 234
+++ ++E + AV P ++L +PNNP G
Sbjct: 120 KMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTI 157
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 95.8 bits (238), Expect = 3e-23
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 126 YPDPESRRLRAALAK------DSGLESDHILVGCGADELIDLIMRCVLDPGD----KIVD 175
L A+ ++ E +I+VG G+ +L + + +V
Sbjct: 65 LCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVA 124
Query: 176 CPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
P ++ Y + + + K E A +++ P +TSPNNPDG
Sbjct: 125 AAPFYSTYVEETTYVRSGMYK----------WEGDAWGFDKKGPYIELVTSPNNPDG 171
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 8e-19
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 13/132 (9%)
Query: 110 PPEVREAL------GQLKFPYIYPDPESRRLRAALA-KDSGLESDHILVGCGADELIDLI 162
E +L + +I P + +++ +G++ + IL GA L+
Sbjct: 41 SGTNPEDFYKKLQGTKLNYGWIEGSPA---FKKSVSQLYTGVKPEQILQTNGATGANLLV 97
Query: 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPK 220
+ +++PGD ++ PT+ GA V ++ + ++E + + R K
Sbjct: 98 LYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLI-RPTTK 156
Query: 221 CIFLTSPNNPDG 232
I + + NNP G
Sbjct: 157 MICINNANNPTG 168
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 6e-18
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 107 YGPPPEVREALGQ-LKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164
PPP + EA+ + L Y P LR ALA++ +E + ++V GA E + ++++
Sbjct: 37 NPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQ 96
Query: 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP---RKSDFSLNVELIADAVEREKPKC 221
++ PGD++V P F +Y DA + GA V F L++ + A+ + +
Sbjct: 97 SLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKAL-TPRTRA 155
Query: 222 IFLTSPNNPDG 232
+ L +P NP G
Sbjct: 156 LLLNTPMNPTG 166
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-16
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 114 REALGQLKFPYIYPDPE-SRRLRAALAK--------DSGLESDHILVGCGADELIDLIMR 164
E + K + D R A+AK + + +++ GA + I+
Sbjct: 67 SEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIF 126
Query: 165 CVLDPGDKIVDCPPTFTMYEFDAAV-NGAAVVKVPRKS--DFSLNVELIADAVERE---- 217
C+ DPGD + P + + D G ++ + +S +F + + + +A E
Sbjct: 127 CLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSN 186
Query: 218 -KPKCIFLTSPNNPDGR 233
K K + LT+P+NP G
Sbjct: 187 IKVKGLILTNPSNPLGT 203
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 7e-16
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 134 LRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTMYEFD 186
RAA+A G +D++ + GA + + R + D+ + P F Y+
Sbjct: 81 TRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVF 140
Query: 187 AAVNGAAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
GA +V+VP F ++ + + + + + + + SPNNP G
Sbjct: 141 VNAAGARLVEVPADTEHFQIDFDALEERIN-AHTRGVIINSPNNPSG 186
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-15
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 109 PPPEVREALGQ--LKFPYIY-PDPESRRLRAALA----KDSGLESD---HILVGCGADEL 158
P ++E L + Y P + LR A+A + G + D I V GA E
Sbjct: 44 GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEA 103
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVELIADAVERE 217
+ + ++ GD+++ P++ Y A++G V ++ + F ++ + A + E
Sbjct: 104 LYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALL-SE 162
Query: 218 KPKCIFLTSPNNPDG 232
+ + + L +P+NP
Sbjct: 163 RTRLVILNTPHNPSA 177
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 1e-15
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 134 LRAALA----KDSGLE---SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
+R LA +G D +++ G + L + + GDK+ P +
Sbjct: 83 IRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL 142
Query: 187 AAVNGAAVVKVPRKS------DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+V V L++ + +A + + ++PNNP G
Sbjct: 143 VEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF-KAGARVFLFSNPNNPAG 193
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-15
Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 126 YPDPE-SRRLRAALAK------DSGL--ESDHILVGCGADELIDLIMRCVLDPGDKIVDC 176
+ D + A+ + + + +H+++ GA + + C+ DPG+ ++
Sbjct: 82 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIP 141
Query: 177 PPTFTMYEFDAAV-NGAAVVKVPRKS--DFSLNVELIADAVERE-----KPKCIFLTSPN 228
P + ++ D G +V + S F + + +A + + K + +T+P+
Sbjct: 142 TPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPS 201
Query: 229 NPDGR 233
NP G
Sbjct: 202 NPLGT 206
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 3e-15
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 100 IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE---SDHILVGC 153
+D YGP E+REA+ + K K +G+E I+V
Sbjct: 52 LDKGLTHYGPNIGLLELREAIAE-KL----------------KKQNGIEADPKTEIMVLL 94
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIA 211
GA++ + + L G++++ P F Y + G V+VP + +F LNV+ +
Sbjct: 95 GANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELK 154
Query: 212 DAVEREKPKCIFLTSPNNPDG 232
V +K + + + SP NP G
Sbjct: 155 KYVT-DKTRALIINSPCNPTG 174
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 4e-15
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 107 YGPPPEVREALGQ--LKFPYIY-PDPESRRLRAALA----KDSGLESD---HILVGCGAD 156
PP++ +A Y P P S LR A+A + G++ D +LV GA
Sbjct: 37 EDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGAT 96
Query: 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP---RKSDFSLNVELIADA 213
E I + +++PG +++ P + Y A+ GA V VP F+L+ + + A
Sbjct: 97 EAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRA 156
Query: 214 VEREKPKCIFLTSPNNPDG 232
V + + + + SP+NP G
Sbjct: 157 V-TPRTRALIINSPHNPTG 174
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 5e-15
Identities = 18/156 (11%), Positives = 43/156 (27%), Gaps = 35/156 (22%)
Query: 94 PEDIVK-----IDANENPYGPP----PEVREALGQLKFPYIYPDPESRRLRAALAKDSGL 144
P+ ++ + P PE+++ SR + +
Sbjct: 59 PQIGIETEIQKLREGVASIYPNLDGLPELKQEA-------------SRFAK----LFVNI 101
Query: 145 E--SDHILVGCGADELIDLIM----RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP 198
+ + + G+ + + R + + P F + + + G
Sbjct: 102 DIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFD 161
Query: 199 --RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
L +L + + I ++PNNP
Sbjct: 162 LFEYRGEKLREKLESYLQT-GQFCSIIYSNPNNPTW 196
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-14
Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 34/176 (19%)
Query: 80 ILPFEVLSI-----QLGRKPEDIVKIDANENPYGPPPEVREAL------GQLKFPYIYPD 128
+ PF V+ + + I+ ++ + G P EAL L Y
Sbjct: 11 VDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALG----YTV 66
Query: 129 ----PESRRLRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
P LR +A + G++ +++ G+ L + D GD++ P
Sbjct: 67 ALGLPA---LRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAP 123
Query: 179 TFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+ Y G V +P ++ + + SP NP G
Sbjct: 124 GYPSYRQILRALGLVPVDLPTAPENRLQPVPA----DFAGLDLAGLMVASPANPTG 175
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 3e-14
Identities = 33/149 (22%), Positives = 52/149 (34%), Gaps = 24/149 (16%)
Query: 107 YGPPPEVREALGQ-----LKFPYIY-PDPESRRLRAALA----KDSGLESD---HILVGC 153
Y P AL Y RL AL+ + + +LV
Sbjct: 49 YHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTV 108
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP----------RKSDF 203
GA E + ++ +D GD+++ P F YE G +P +D+
Sbjct: 109 GAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADW 168
Query: 204 SLNVELIADAVEREKPKCIFLTSPNNPDG 232
L+ + EK K I + +P+NP G
Sbjct: 169 VLDNNELEALF-NEKTKMIIINTPHNPLG 196
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 3e-14
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Query: 109 PPPEVREALGQ-LKFP--YIYPDPE-SRRLRAALA----KDSGLESD---HILVGCGADE 157
PP +AL + L P Y Y + A G+ D L G+ E
Sbjct: 39 PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE 217
+ ++ + +P D ++ + Y A V +P + D +++ + + V
Sbjct: 99 GLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGV-WR 157
Query: 218 KPKCIFLTSPNNPDG 232
+ K + L PNNP G
Sbjct: 158 EAKVLLLNYPNNPTG 172
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 4e-14
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 34/149 (22%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
P+ IV + + Y E+RE + S + +
Sbjct: 44 PKPIVDEGIKSLKEGKTHYTDSRGILELREKI-------------SELYK----DKYKAD 86
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDF 203
D+I++ G+ + + ++D GD+++ P + Y+ GA V
Sbjct: 87 IIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD----- 141
Query: 204 SLNVELIADAVEREKPKCIFLTSPNNPDG 232
VE + +A+ +K K I + SP+NP G
Sbjct: 142 -FTVESLEEAL-SDKTKAIIINSPSNPLG 168
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 5e-14
Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 24/204 (11%)
Query: 44 MSSTLPVEQQVNEGQRRLTGDSFIRSHLRKLKPYQPILPF-EVLSIQLGRKPEDIVKID- 101
M S+ + R G I + L + F + + ++ P + I+
Sbjct: 1 MGSSHHHHHHSSGLVPR--GSHMISNKLANIPDS----YFGKTMGRKIEHGPLPL--INM 52
Query: 102 ANENP-YGPPPEVREALGQ-LKFP--YIYPDPE-SRRLRAALA----KDSGLESD---HI 149
A P P + + + L P Y + A+ + + D +
Sbjct: 53 AVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEV 112
Query: 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVE 208
+ G + + CV++PGD ++ P +T Y + V + + +
Sbjct: 113 CILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWS 172
Query: 209 LIADAVEREKPKCIFLTSPNNPDG 232
+ + +K K I+LT PNNP G
Sbjct: 173 KVDSQI-IDKTKLIYLTYPNNPTG 195
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 8e-14
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 18/118 (15%)
Query: 126 YPDPESRRLRAALAKDSGL---ESDHILVGCGADELIDLIMR--------CVLDPGDKIV 174
+ E + L + G + +I+ G G +LI ++ P K+V
Sbjct: 100 FISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVV 159
Query: 175 DCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
P + ++ ++ N + + +TSPNNP+G
Sbjct: 160 AHAPFYPVFREQTKYFDKKGYV------WAGNAANYVNVS-NPEQYIEMVTSPNNPEG 210
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-13
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 25/150 (16%)
Query: 107 YGPPPEVREALGQ-LKFPYIY----PDPESRRLRAALA----KDSGLESD---HILVGCG 154
+ PP EA + ++ L LA + G E D ++LV G
Sbjct: 40 FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVG 99
Query: 155 ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP------------RKSD 202
+ + ++D GD+++ P F YE + G V V S+
Sbjct: 100 GYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSN 159
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+ L+ +A + K + L +PNNP G
Sbjct: 160 WQLDPMELAGKF-TSRTKALVLNTPNNPLG 188
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-13
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Query: 107 YGPPPEVREALGQ---LKFPYIYPDPESR-RLRAALA----KDSGLESD---HILVGCGA 155
PP V+E L + + Y L AL+ K + D ILV GA
Sbjct: 35 ISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGA 94
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-----------RKSDFS 204
+ ++ ++DPGD+++ P + YE + GA V +P SD++
Sbjct: 95 YGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWT 154
Query: 205 LNVELIADAVEREKPKCIFLTSPNNPDG 232
+ + K K I L +P+NP G
Sbjct: 155 FDPRELESKF-SSKTKAIILNTPHNPLG 181
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-13
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 110 PPEVREALGQLKFPYI-YPD----PESRRLRAALA----KDSGLE--SDHILVGCGADEL 158
P E + + K + Y E LR A A + ++ +++LV G E
Sbjct: 58 PEVFFERIYENKPEVVYYSHSAGIWE---LREAFASYYKRRQRVDVKPENVLVTNGGSEA 114
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVER 216
I + +PGD+I+ P + Y A + G ++ V + F++ + + +
Sbjct: 115 ILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN- 172
Query: 217 EKPKCIFLTSPNNPDG 232
E+ K I L++P NP G
Sbjct: 173 ERTKGIVLSNPCNPTG 188
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-13
Identities = 40/210 (19%), Positives = 81/210 (38%), Gaps = 34/210 (16%)
Query: 45 SSTLPVEQQVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANE 104
SS + + + Q S S + K PI + ++ + +
Sbjct: 8 SSGVDLGTENLYFQSMW---SVRPSDMAKKTFN-PIRAIVDNMKVKPNPNKTMISLSIGD 63
Query: 105 -NPYG---PPPEVREAL------GQLKFPYIYPD----PESRRLRAALA-----KDSGLE 145
+G PEV +A+ G+ Y R +A ++ LE
Sbjct: 64 PTVFGNLPTDPEVTQAMKDALDSGKYNG---YAPSIGFLS---SREEIASYYHCPEAPLE 117
Query: 146 SDHILVGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVNGAAVVKVP--RKSD 202
+ +++ G + IDL + + +PG I+ P P F++Y+ A G V +
Sbjct: 118 AKDVILTSGCSQAIDLCLAVLANPGQNIL-VPRPGFSLYKTLAESMGIEVKLYNLLPEKS 176
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+ ++++ + ++ EK C+ + +P+NP G
Sbjct: 177 WEIDLKQLEYLID-EKTACLIVNNPSNPCG 205
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 5e-13
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 15/137 (10%)
Query: 101 DANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADE 157
N Y P PE REA+ + S + D++++ G
Sbjct: 65 SQECNGYFPTVGSPEAREAVAT-WW--------RNSFVHKEELKSTIVKDNVVLCSGGSH 115
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVE 215
I + + + D GD + P F YE G + ++D+ +++ I +
Sbjct: 116 GILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD 175
Query: 216 REKPKCIFLTSPNNPDG 232
+K K + +T+P+NP G
Sbjct: 176 -DKTKLLIVTNPSNPCG 191
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 6e-13
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Query: 109 PPPEVREALGQ-LKFP--YIYPDPE-SRRLRAALA----KDSGLESD---HILVGCGADE 157
PP + E L + + Y RLR A++ ++ D +V G+ E
Sbjct: 51 TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVE 215
+ +M LD GD I+ P++ ++ + A + GA V VP DF +E
Sbjct: 111 GLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRES- 169
Query: 216 REKPKCIFLTSPNNPDG 232
KP+ + L P+NP
Sbjct: 170 IPKPRMMILGFPSNPTA 186
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-12
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 30/151 (19%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE + + I N YG PE+R+A+ + + + +G++
Sbjct: 56 PEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVE-RE----------------KRKNGVD 98
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
D + V E + LI +LDPGD+I+ P++ Y G V+ +
Sbjct: 99 ITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEE 158
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
D+ +++ I + ++ K I + +PNNP G
Sbjct: 159 DWQPDIDDIRKKIT-DRTKAIAVINPNNPTG 188
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 1e-12
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 30/151 (19%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE +V+ + E Y P E+RE + + + + +
Sbjct: 56 PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAK-RI----------------GERYKKD 98
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
D ++V GA + + +LDPGD+++ P + Y + G V V
Sbjct: 99 ISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSK 158
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+F ++E + + K K + + SPNNP G
Sbjct: 159 NFQPSLEEVEGLL-VGKTKAVLINSPNNPTG 188
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 6e-12
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 107 YGPPPEVREALGQ---LKFPYIY-PDPESRRLRAALA----KDSGLE--SDHILVGCGAD 156
Y PP + + + Y P L +L E ++++ V GA+
Sbjct: 69 YSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGAN 128
Query: 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP------------RKSDFS 204
E I + +L+ GD+++ P F Y + + G VV VP R +++
Sbjct: 129 EGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWT 188
Query: 205 LNVELIADAVEREKPKCIFLTSPNNPDG 232
++ E A+ K K + + +P+NP G
Sbjct: 189 IDFEQFEKAI-TSKTKAVIINTPHNPIG 215
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 1e-11
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 134 LRAALA-----KDSGLESD--HILVGCGADELIDLIMRCVLDPGDKIVD---CP-PTFTM 182
+R +A +D G+ +D +I + GA + I I++ ++ G K P P + +
Sbjct: 134 IREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPL 193
Query: 183 YEFDAAVNGAAVVKVPRK--SDFSLNVE----LIADAVEREKPKCIFLTSPNNPDG 232
Y + A V + ++LNV + +A + PK + + +P NP G
Sbjct: 194 YSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTG 249
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-11
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 22/175 (12%)
Query: 73 KLKPYQPILPFEVLS--IQLGRKPEDIVKIDANE-NPYGPPPE-VREALGQ-LKFPYIYP 127
+PY PFE L ++ + +D P P+ +++AL IYP
Sbjct: 3 TFEPY----PFERLRALLKEITPKKRG--LDLGIGEPQFETPKFIQDALKNHTHSLNIYP 56
Query: 128 DPE-SRRLRAALAK------DSGLESDHILVGCGADELIDLIMRCVLD--PGDKIVDCPP 178
LRAA L+ + ++ G+ E++ VL I P
Sbjct: 57 KSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNP 116
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233
+ +YE A A + +P + L + E ++ + L SPNNP GR
Sbjct: 117 FYQIYEGAAKFIKAKSLLMPLTKENDFTPSL--NEKELQEVDLVILNSPNNPTGR 169
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 6e-11
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
Query: 134 LRAALA----KDSGLESD--HILVGCGADELIDLIMRCVL-DPGDKIVDCPPTFTMYEFD 186
LR A+A G ++ I + GA + L+M+ ++ + D I+ P + +Y
Sbjct: 139 LRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSAS 198
Query: 187 AAVNGAAVVKVPRK--SDFSLNVELIADAVERE-----KPKCIFLTSPNNPDG 232
A++G A+V + + L + +E + + + +P NP G
Sbjct: 199 IALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTG 251
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 7e-11
Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 18/159 (11%)
Query: 92 RKPEDIVKIDANENPYGPPPEVREA-LGQLKFPYIYPD--PESRR--LRAALAKDSGL-- 144
R + ++ P + E G L Y P +R + ++ G
Sbjct: 101 RFLGKSLSYVRDQLGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADA 160
Query: 145 ---ESDHILVGCGADELI-----DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVK 196
ES ++ G + L + +L GDK+ P FT Y + A+ +
Sbjct: 161 IPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEE 220
Query: 197 VPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDG 232
V +D SLN + +++ K F +P+NP
Sbjct: 221 VAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPS 259
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 7e-11
Identities = 32/164 (19%), Positives = 49/164 (29%), Gaps = 22/164 (13%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPE-VREA-LGQLKFPYIYPDPESRRLRAALAK------ 140
+ D V E + V E G + Y PD +
Sbjct: 97 DEDKFLIDAVNYCHTE-LGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELS 155
Query: 141 --DSGLESDH-ILVGCGADELI-----DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGA 192
D+ L + G I L +L GDKI P FT Y +
Sbjct: 156 YKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDY 215
Query: 193 AVVKVP----RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+V+V K+D+ + I + K + + +P NP
Sbjct: 216 ELVEVDLHSYEKNDWEIEPNEIEKLKD-PSIKALIVVNPTNPTS 258
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-10
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 126 YPDPE-SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
Y E LRA +A+ G+ + +L+ G+ + +DL+ + LD G ++ P++
Sbjct: 70 YSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYM--- 126
Query: 185 FDAAVN-----GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPN--NPDGR 233
A+ G + VP + +++ + + ++RE+P+ ++ P+ NP G
Sbjct: 127 --GAIQAFRLQGPRFLTVPAGEE-GPDLDALEEVLKRERPRFLY-LIPSFQNPTGG 178
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-10
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 30/151 (19%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE + + + + Y PP PE+REAL + KF +++GL
Sbjct: 46 PEHVKEAARRALAQGKTKYAPPAGIPELREALAE-KF----------------RRENGLS 88
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
+ +V G + + + + +LDPGD+++ P + Y G VV+V +
Sbjct: 89 VTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEE 148
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F + E + A+ + K + + SPNNP G
Sbjct: 149 GFVPDPERVRRAI-TPRTKALVVNSPNNPTG 178
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-09
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 30/151 (19%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
P+ IV+ ++ + YGP P +REA+ Q K +D+GL
Sbjct: 45 PKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQ-KL----------------QRDNGLC 87
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
+D+ILV G + I +M +++PGD+++ P + Y + V +P ++
Sbjct: 88 YGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVET 147
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F ++ E I A+ K K + +P+NP G
Sbjct: 148 QFKVSPEQIRQAI-TPKTKLLVFNTPSNPTG 177
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 3e-08
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 35/188 (18%)
Query: 71 LRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANE-------NPYGPPPE-VREALGQ-LK 121
L++LKPY PF +L + I + E P P P+ + +AL L
Sbjct: 6 LKQLKPY----PFA----RLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLH 57
Query: 122 FPYIYPDPE-SRRLRAALA-------KDSGLESD-HILVGCGADELIDLIMRCVLDP--- 169
YP LR A A +++D IL G+ E + ++ VL+P
Sbjct: 58 ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSD 117
Query: 170 --GDKIVDCP-PTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLT 225
IV P P + +YE + G + F+ + I++ V ++ K +F+
Sbjct: 118 GIKPAIV-SPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEV-WKRTKLVFVC 175
Query: 226 SPNNPDGR 233
SPNNP G
Sbjct: 176 SPNNPSGS 183
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-08
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 23/144 (15%)
Query: 109 PPPEVREAL-------GQLKFPYIYPDPES--RRLRAALA----KDSGLESDHILVGCGA 155
P + +A+ + Y E LR A+A +G +D I + G+
Sbjct: 83 LPKYIADAMAKAAAGLATREGYSGYG-AEQGQGALREAVASTFYGHAGRAADEIFISDGS 141
Query: 156 DELIDLI-MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIA--- 211
D+ ++ + + P++ +Y + + G D +
Sbjct: 142 KC--DIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNH 199
Query: 212 ---DAVEREKPKCIFLTSPNNPDG 232
D + ++ IF SPNNP G
Sbjct: 200 FFPDLSKAKRTDIIFFCSPNNPTG 223
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 7e-08
Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 25/140 (17%)
Query: 109 PPPEVREAL-------GQLKFPYIYPDPES--RRLRAALA---KDSGLESDHILVGCGAD 156
V EA Y P+ LR L+ +++ I + GA
Sbjct: 47 LNASVAEAFASSIARLSSPTTCRGYG-PDFGLPALRQKLSEDFYRGFVDAKEIFISDGAK 105
Query: 157 ELIDLI-MRCVLDPGDKIVDCPPTFTMYEFDAAVNGA-AVVKVP--RKSDFSLNVELIAD 212
DL + P + P++ Y A + GA ++ +P +++ F +
Sbjct: 106 V--DLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAF------FPE 157
Query: 213 AVEREKPKCIFLTSPNNPDG 232
E + L SPNNP G
Sbjct: 158 FPEDTHIDILCLCSPNNPTG 177
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 36/144 (25%)
Query: 107 YGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE--SDHILVGCGADELIDL 161
Y P + AL L L + G + +I + G+
Sbjct: 71 YDGPQGKTALLNALAVL-----------------LRETLGWDIEPQNIALTNGSQSAFFY 113
Query: 162 IMRCVLDPGDKIVDCPPTFTMY-EFDAAVN-----------GAAVVKVPRKSDFSLNVEL 209
+ F + E+ + + +P + F +V+
Sbjct: 114 LFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLP-EGQFKYHVDF 172
Query: 210 IADAVEREKPKCIFLTSPNNPDGR 233
+ E+ I ++ P NP G
Sbjct: 173 EHLHI-GEETGMICVSRPTNPTGN 195
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 23/145 (15%)
Query: 109 PPPEVREAL-------GQLKFPYIYPDPES--RRLRAALA----KDSGLESDHILVGCGA 155
P + A+ ++ Y E + LRAA+A G+ D + V GA
Sbjct: 70 IPEVITSAMAKKAHELSTIEGYSGYG-AEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA 128
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL------ 209
I + + + I P++ Y + + G + +
Sbjct: 129 KCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPEN 187
Query: 210 --IADAVEREKPKCIFLTSPNNPDG 232
D + IF SPNNP G
Sbjct: 188 GFFPDLSTVGRTDIIFFCSPNNPTG 212
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 126 YPDPE-SRRLRAALA---KDSGL--ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
Y + LR L + + I++ G+ + +DLI R L+PGD +V PT
Sbjct: 114 YGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPT 173
Query: 180 FTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVER-----EKPKCIFLTSPN- 228
+ AA+ +++P + + VE++ + ++ +K K ++ T P
Sbjct: 174 YL-----AALQAFNFYEPQYIQIPLDDE-GMKVEILEEKLKELKSQGKKVKVVY-TVPTF 226
Query: 229 -NPDGR 233
NP G
Sbjct: 227 QNPAGV 232
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 26/127 (20%)
Query: 126 YPDPE-SRRLRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
Y LR LA K LE ++I++ G +DL+ R ++DPGD ++ P
Sbjct: 71 YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENP 130
Query: 179 TFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVER-----EKPKCIFLTSPN 228
++ + GA + VP +D + V+L+ + ++ +K K I+ T P
Sbjct: 131 SYI-----NTLLAFEQLGAKIEGVPVDND-GMRVDLLEEKIKELKAKGQKVKLIY-TIPT 183
Query: 229 --NPDGR 233
NP G
Sbjct: 184 GQNPMGV 190
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 29/130 (22%)
Query: 126 YPDPE-SRRLRAALAK-------DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCP 177
Y E L+ + K +GL+ D+++ G+ + +DLI + LD V
Sbjct: 81 YSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDD 140
Query: 178 PTFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVER-------EKPKCIFLT 225
P + A+N A V VP + D +++ ++ + ++ K I+
Sbjct: 141 PAYL-----GAINAFRQYLANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIY-V 193
Query: 226 SPN--NPDGR 233
N NP G
Sbjct: 194 VSNFHNPAGV 203
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 17/101 (16%)
Query: 142 SGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVN-----GAAVV 195
S LE +++ + L K++ P +D G ++
Sbjct: 96 SSLELQGLVLTFALLHGVRGSTGPWLSQTPKMI-VTVPG-----YDRHFLLLQTLGFELL 149
Query: 196 KVPRKSDFSLNVELIADAV-EREKPKCIFLTSPN--NPDGR 233
V +SD +V+ + K I P NP G
Sbjct: 150 TVDMQSD-GPDVDAVERLAGTDPSVKGIL-FVPTYSNPGGE 188
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 45/202 (22%)
Query: 65 SFIRSHLRKLKPYQP-------------ILPFEVLSIQLGRKPEDIVKIDANENP--YGP 109
S IR+ L + PF+ I + + + Y P
Sbjct: 17 SPIRTMTDILSRGPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMKRALQYSP 76
Query: 110 P---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166
PE+ L QL+ + + V G+ + + + +
Sbjct: 77 SAGIPELLSWLKQLQ--------IKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI 128
Query: 167 LDPGDKIVDCPPTF--TMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-------- 216
++PGD ++ P + T+ G ++ V + + + D + R
Sbjct: 129 INPGDNVLLDEPAYSGTLQSLHPL--GCNIINVASDES-GIVPDSLRDILSRWKPEDAKN 185
Query: 217 ---EKPKCIFLTSPN--NPDGR 233
PK ++ T PN NP G
Sbjct: 186 PQKNTPKFLY-TVPNGNNPTGN 206
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 5e-06
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 109 PPPEVREALGQ-LKFP-YIYPDPESRRLRAALAK------DSGLESDHILVGCGADELID 160
P + EAL Q L + Y ++ AA+A + ++S ++ G ++
Sbjct: 42 TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVS 101
Query: 161 LIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADAVE 215
++R + G+ +V P + F A+ N V+ V + + ++ + +
Sbjct: 102 ELIRQWSETGEGVVIHTPAY--DAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLA 159
Query: 216 REKPKCIFLTSPNNPDGRFSWT 237
+ + K + L SP NP G+ WT
Sbjct: 160 KPECKIMLLCSPQNPTGK-VWT 180
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 30/122 (24%)
Query: 134 LRAALAKDSGLESDHILVGCGADELI--DLIMRCVL------------DPGDKIVDCP-P 178
+R A+ GL +D ++ G+ I DLI + K + CP P
Sbjct: 81 IRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWL-CPVP 139
Query: 179 TFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPN--NPD 231
+D G ++ VP + ++ ++ + V+ + K ++ T P NP
Sbjct: 140 G-----YDRHFTITEHFGFEMINVPMTDE-GPDMGVVRELVKDPQVKGMW-TVPVFGNPT 192
Query: 232 GR 233
G
Sbjct: 193 GV 194
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 6e-06
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 22/120 (18%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLG--RKPEDIVKIDANENPYGPPPEVREALGQLKF 122
S I HL+ ++ + + F ++ + + KI + + + L QLKF
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKF 529
Query: 123 --PYIYP-DPESRRLRAALAKDSGLESDHILVGCGADELI----DLIMRCVLDPGDKIVD 175
PYI DP+ RL A+ L + + DL+ ++ + I +
Sbjct: 530 YKPYICDNDPKYERLVNAIL--------DFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-06
Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 17/146 (11%)
Query: 103 NENPYGPPPEVREALGQLK----FPYIYPD--PESRRLRAALAK--DSGLESDH---ILV 151
N++ + L FPY P E R L + L D+ +V
Sbjct: 59 NKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIV 118
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVEL 209
+ L+ ++ D I+ + Y+ A ++ D +
Sbjct: 119 TNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDS 178
Query: 210 IADAVEREKPKC---IFLTSPNNPDG 232
+ +A++ K + L PNNP G
Sbjct: 179 LVEALQ-SYNKDKVIMILNYPNNPTG 203
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 9e-06
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 30/122 (24%)
Query: 134 LRAALAKDSGLESDHILVGCGADELI--------------DLIMRCVLDPGDKIVDCP-P 178
+R A G+ + +L G + I D + + K + CP P
Sbjct: 83 IRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWI-CPVP 141
Query: 179 TFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPN--NPD 231
+D + G ++ VP D +++ + + V+ + K ++ P NP
Sbjct: 142 G-----YDRHFSITERFGFEMISVPMNED-GPDMDAVEELVKNPQVKGMW-VVPVFSNPT 194
Query: 232 GR 233
G
Sbjct: 195 GF 196
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 1e-05
Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 21/144 (14%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
PE+ ++ + LK Y E A+A + + D + G
Sbjct: 41 IAPEIMASMEEKLKVAAFGYESVPAE---YYKAVADWEEIEHRARPKEDWCVFASGVVPA 97
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
I ++R PGD+I+ P + F + + NG V+ + +S+N + +
Sbjct: 98 ISAMVRQFTSPGDQILVQEPVY--NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEK 155
Query: 214 VEREKPKCIFLTSPNNPDGRFSWT 237
+ + + +P+NP G +W+
Sbjct: 156 LATPSVRMMVFCNPHNPIGY-AWS 178
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 2e-05
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
PEV++A+ + Y Y E L A+ + + I+ G
Sbjct: 45 VMPEVKQAIHDYAEQLVYGYTYASDE---LLQAVLDWEKSEHQYSFDKEDIVFVEGVVPA 101
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
I + ++ G+ ++ P + F +V N +V K + F ++ E + +
Sbjct: 102 ISIAIQAFTKEGEAVLINSPVY--PPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLEND 159
Query: 214 VEREKPKCIFLTSPNNPDGRFSWT 237
+ K L +P+NP GR W
Sbjct: 160 IVENDVKLYLLCNPHNPGGR-VWE 182
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 21/144 (14%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
P PE++EA+ + Y Y + + L A+ D + + IL G
Sbjct: 75 PVPEIKEAIINYGREHIFGYNYFNDD---LYQAVIDWERKEHDYAVVKEDILFIDGVVPA 131
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
I + ++ + GD ++ P + Y F + N +V+ + F ++ E +
Sbjct: 132 ISIALQAFSEKGDAVLINSPVY--YPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKD 189
Query: 214 VEREKPKCIFLTSPNNPDGRFSWT 237
+ K L SP+NP GR W
Sbjct: 190 IIDNNVKIYLLCSPHNPGGR-VWD 212
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 21/144 (14%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
PPE+ E L + L Y P E + + K +++D I+ G
Sbjct: 45 NPPELIEGLKKYLDETVLGYTGPTEE---YKKTVKKWMKDRHQWDIQTDWIINTAGVVPA 101
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
+ +R PGD ++ P + Y F A+ +++ ++++ + +
Sbjct: 102 VFNAVREFTKPGDGVIIITPVY--YPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKL 159
Query: 214 VEREKPKCIFLTSPNNPDGRFSWT 237
+ + K + SP+NP GR W
Sbjct: 160 SKDKNNKALLFCSPHNPVGR-VWK 182
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 8e-05
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 21/141 (14%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
P V +A+ ++ Y L A A+ + I
Sbjct: 37 TCPAVLQAITDAVQREAFGYQPDGSL---LSQATAEFYADRYGYQARPEWIFPIPDVVRG 93
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSDFSLNVELIADAVER 216
+ + + K++ P + F + + + +N+ + +
Sbjct: 94 LYIAIDHFTPAQSKVIVPTPAY--PPFFHLLSATQREGIFIDAT--GGINLHDVEKGF-Q 148
Query: 217 EKPKCIFLTSPNNPDGRFSWT 237
+ I L +P NP G +
Sbjct: 149 AGARSILLCNPYNPLGM-VFA 168
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 34/134 (25%)
Query: 134 LRAALA----KDSGLE--SDHILVGCGA----DELIDLIMRCVLDPGDKIVDCP------ 177
AL + S++I + G+ L +L ++ + +
Sbjct: 88 FIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSI 147
Query: 178 -----PTFTMYEFDAAVNGA------AVVKVPRKSD-----FSLNVELIADAVE--REKP 219
P + Y + +V + + ++ E + + +
Sbjct: 148 LLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRI 207
Query: 220 KCIFLTSPNNPDGR 233
I + P NP G
Sbjct: 208 GAICCSRPTNPTGN 221
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 249 | |||
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.94 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.94 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.93 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.93 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.92 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.92 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.92 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.91 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.9 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.9 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.9 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.9 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.9 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.9 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.9 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.9 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.9 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.9 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.89 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.89 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.89 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.89 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.89 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.88 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.88 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.88 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.88 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.88 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.88 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.88 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.88 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.88 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.88 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.88 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.88 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.87 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.87 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.87 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.87 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.87 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.87 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.87 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.86 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.86 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.86 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.86 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.86 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.86 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.85 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.85 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.85 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.85 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.85 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.84 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.84 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.84 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.84 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.84 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.84 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.83 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.83 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.83 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.83 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.83 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.83 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.83 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.83 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.82 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.82 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.82 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.82 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.82 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.82 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.82 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.82 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.82 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.82 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.81 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.81 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.81 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.81 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.8 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.8 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.8 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.79 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.67 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.79 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.79 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.79 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.79 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.78 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.78 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.78 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.78 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.77 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.77 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.77 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.77 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.76 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.76 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.76 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.76 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.75 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.75 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.75 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.75 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.75 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.75 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.74 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.74 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.74 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.73 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.73 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.72 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.7 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.7 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.7 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.7 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.69 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.69 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.67 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.66 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.66 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.66 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.66 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.66 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.66 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.65 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.64 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.64 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.64 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.64 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.64 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.63 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.62 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.61 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.61 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.61 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.61 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.6 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.6 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.6 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.6 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.6 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.59 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.59 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.59 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.59 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.59 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.59 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.58 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.57 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.57 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.57 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.57 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.57 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.57 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.56 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.56 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.55 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.55 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.55 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.54 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.54 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.54 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.54 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.54 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.54 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.53 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.53 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.51 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.51 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.51 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.5 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.5 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.49 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.49 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.49 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.48 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.47 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.47 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.44 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.43 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.4 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.39 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.39 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.39 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.38 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.38 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.36 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.36 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.35 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.35 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.35 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.35 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.34 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.33 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.33 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.32 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.29 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.29 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.27 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.27 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.26 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.26 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.26 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.25 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.24 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.22 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.22 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.22 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.22 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.21 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.21 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.2 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.2 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.19 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.19 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.18 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.18 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.18 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.13 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.09 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.05 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 98.98 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 98.87 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 98.74 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 98.73 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 98.05 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 98.54 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.36 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 96.95 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 96.86 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 95.35 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 93.99 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 88.87 |
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=202.96 Aligned_cols=178 Identities=30% Similarity=0.463 Sum_probs=150.7
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCC
Q 025730 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLE 145 (249)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~ 145 (249)
++++++.+.+|.++.....+...+|. +++|+|+.|++++++++.+.+++.+ +.....||+.+..++|++++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~lr~~la~~~~~~ 83 (363)
T 3ffh_A 6 WKKSLAGLSSYKPGKREEEVMAELGL--TKITKLSSNENPLGTSKKVAAIQANSSVETEIYPDGWASSLRKEVADFYQLE 83 (363)
T ss_dssp CCGGGTTCCC----CHHHHHHHTTTC--SCCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC----CHHHHHHHHHHHTCC
T ss_pred hhHHHHhCCCCCCCCCHHHHHHhcCC--CceEEccCCCCCCCCCHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHhCCC
Confidence 46677888889888877777777765 5789999999999999999999987 55557788888999999999999999
Q ss_pred CCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEc
Q 025730 146 SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLT 225 (249)
Q Consensus 146 ~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~ 225 (249)
+++|++|+|+++++.+++++++++||+|+++.|+|..|...++..|++++.++.+.++.+|+++++++++ .++++|+++
T Consensus 84 ~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~ 162 (363)
T 3ffh_A 84 EEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAID-EKTTIVWIC 162 (363)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCC-TTEEEEEEE
T ss_pred hhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcc-cCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999999987789999999999998 689999999
Q ss_pred CCCCccccCCChHHHHHHHhhhh
Q 025730 226 SPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 226 ~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
+||||||.+++.++ +..+++.+
T Consensus 163 ~p~nptG~~~~~~~-l~~l~~~~ 184 (363)
T 3ffh_A 163 NPNNPTGNYIELAD-IQAFLDRV 184 (363)
T ss_dssp SSCTTTCCCCCHHH-HHHHHTTS
T ss_pred CCCCCcCCCcCHHH-HHHHHHhC
Confidence 99999999976554 55555543
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=201.44 Aligned_cols=174 Identities=28% Similarity=0.496 Sum_probs=154.3
Q ss_pred HHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCC
Q 025730 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLES 146 (249)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~ 146 (249)
+++++.+.+|.++.....++..+|. +++|+|+.|++++++++.+.+++.+ +....+|++....+||+++++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~ 82 (365)
T 3get_A 5 NEFLNNLSNYEPGKDIEVIAKEYGV--KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQN 82 (365)
T ss_dssp CGGGGGSCCCCCCCCHHHHHHHTTC--SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHTCCG
T ss_pred chhHhhcCCCCCCCCHHHHHHhcCC--CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHhCCCc
Confidence 4677888999888888888888876 6789999999999999999999986 555578887655899999999999999
Q ss_pred CCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC-CCCCCCCHHHHHHhhccCCceEEEEc
Q 025730 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR-KSDFSLNVELIADAVEREKPKCIFLT 225 (249)
Q Consensus 147 ~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~-~~~~~id~e~l~~~i~~~~~k~i~l~ 225 (249)
++|++|+|+++++.+++.+++++||+|+++.|+|..+...++..|++++.++. ++++ +|+++++++++ .++++|+++
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~-~~~~~v~~~ 160 (365)
T 3get_A 83 ENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHK-DEIKLIFLC 160 (365)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT-TTEEEEEEE
T ss_pred ceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC-CCCCEEEEc
Confidence 99999999999999999999999999999999999999999999999999997 6778 99999999998 789999999
Q ss_pred CCCCccccCCChHHHHHHHhh
Q 025730 226 SPNNPDGRFSWTSSWIWGISS 246 (249)
Q Consensus 226 ~PnNPTG~~~~~~e~i~~i~~ 246 (249)
+||||||.+++.++ +.++++
T Consensus 161 ~p~nptG~~~~~~~-l~~l~~ 180 (365)
T 3get_A 161 LPNNPLGECLDASE-ATEFIK 180 (365)
T ss_dssp SSCTTTCCCCCHHH-HHHHHH
T ss_pred CCCCCCCCCcCHHH-HHHHHH
Confidence 99999999986664 344443
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=199.07 Aligned_cols=172 Identities=32% Similarity=0.551 Sum_probs=150.2
Q ss_pred hHHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCCcChHHHHHHHHHH
Q 025730 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPDPESRRLRAALAKD 141 (249)
Q Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~~g~~~lr~~la~~ 141 (249)
.++++.+..+.+|.+. .++++|+|+.|++++++++.+.+++.+ +. ...+|++.+..+||++++++
T Consensus 12 ~~~~~~~~~~~~~~~~------------~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~l~~~la~~ 79 (367)
T 3euc_A 12 RIIRDDVRAMGAYHVP------------DSHGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPVPSSEALRAKLKEV 79 (367)
T ss_dssp HHSCHHHHHSCCSSCC------------CCTTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCC------------CCCCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCCcHHHHHHHHHHH
Confidence 4556778888888643 236789999999999999999999876 33 34788888899999999999
Q ss_pred cCC-CCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCce
Q 025730 142 SGL-ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPK 220 (249)
Q Consensus 142 ~~~-~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k 220 (249)
+|+ ++++|++|+|+++++.+++++++++||+|+++.|+|..+...++..|++++.++.+.++.+|++++++++++.+++
T Consensus 80 ~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 159 (367)
T 3euc_A 80 MQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPA 159 (367)
T ss_dssp HTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCS
T ss_pred hCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCC
Confidence 998 7789999999999999999999999999999999999999999999999999998888899999999999844899
Q ss_pred EEEEcCCCCccccCCChHHH--HHHHhhhh
Q 025730 221 CIFLTSPNNPDGRFSWTSSW--IWGISSEH 248 (249)
Q Consensus 221 ~i~l~~PnNPTG~~~~~~e~--i~~i~~~~ 248 (249)
+|++++||||||.+++.+++ +.++|++|
T Consensus 160 ~v~~~~~~nptG~~~~~~~l~~i~~~~~~~ 189 (367)
T 3euc_A 160 IVYLAYPNNPTGNLFDAADMEAIVRAAQGS 189 (367)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHTBTT
T ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHhhhhc
Confidence 99999999999999876644 66678876
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=198.45 Aligned_cols=159 Identities=30% Similarity=0.561 Sum_probs=137.6
Q ss_pred HHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHHcCCC
Q 025730 66 FIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145 (249)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~~~~~ 145 (249)
++++.+..+.+|.++... ...++|+|+.|+|++++|+.+ .+....+||+.+..+||++++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~---------~~~~~i~l~~~~~~~~~~~~v-----a~~~~~~Y~~~~~~~lr~~la~~~~~~ 74 (356)
T 1fg7_A 9 LARENVRNLTPYQSARRL---------GGNGDVWLNANEYPTAVEFQL-----TQQTLNRYPECQPKAVIENYAQYAGVK 74 (356)
T ss_dssp HSCHHHHHCCCCCCCCCC---------TTTCSEECSSCCCSSCCCCCC-----CCCCTTSCCCSSCHHHHHHHHHHHTSC
T ss_pred HhhHHHHhcCCCCCCccc---------CCCceEEeeCCCCCCCCCHhH-----hhhhhccCCCccHHHHHHHHHHHhCCC
Confidence 456788888888654322 124679999999999988776 233447898877899999999999999
Q ss_pred CCCEEEeCCHHHHHHHHHHHhcCCC-CeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEE
Q 025730 146 SDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFL 224 (249)
Q Consensus 146 ~~~I~vt~Ga~~~l~~~~~~~~~pG-d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l 224 (249)
+++|++|+|+++++.+++++++++| |+|+++.|+|..|...++..|++++.++.++++.+|+++++++++ ++++|++
T Consensus 75 ~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--~~~~v~l 152 (356)
T 1fg7_A 75 PEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD--GVKVVYV 152 (356)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT--TEEEEEE
T ss_pred hHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc--CCCEEEE
Confidence 9999999999999999999999999 999999999999999999999999999987778999999999886 7899999
Q ss_pred cCCCCccccCCChHHH
Q 025730 225 TSPNNPDGRFSWTSSW 240 (249)
Q Consensus 225 ~~PnNPTG~~~~~~e~ 240 (249)
++||||||.+++.+++
T Consensus 153 ~~p~nptG~~~~~~~l 168 (356)
T 1fg7_A 153 CSPNNPTGQLINPQDF 168 (356)
T ss_dssp ESSCTTTCCCCCHHHH
T ss_pred eCCCCCCCCCCCHHHH
Confidence 9999999999876544
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=192.32 Aligned_cols=153 Identities=25% Similarity=0.329 Sum_probs=137.7
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCC
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGD 171 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd 171 (249)
.++++|+|+.|++++++++.+.+++.+ +....+||+.+..+||+++++++++++++|++|+|+++++.+++.+++++||
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd 93 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDAVVKANRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEA 93 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHTGGGTTSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCCTTC
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHhhCcCCCCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhCCCC
Confidence 356789999999999999999999986 5555788887889999999999999999999999999999999999999999
Q ss_pred eEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-CCceEEEEcCCCCccccCCChHHHHHHHhh
Q 025730 172 KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-EKPKCIFLTSPNNPDGRFSWTSSWIWGISS 246 (249)
Q Consensus 172 ~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~ 246 (249)
+|+++.|+|..+...++..|++++.++.+.++.+|++++++++++ .++++|++++||||||.+++.++ +.+|++
T Consensus 94 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~-l~~l~~ 168 (354)
T 3ly1_A 94 QLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADV-IEPWIA 168 (354)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHH-HHHHHH
T ss_pred eEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHH-HHHHHH
Confidence 999999999999999999999999999877899999999999975 58999999999999999986665 444444
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-25 Score=196.76 Aligned_cols=155 Identities=26% Similarity=0.420 Sum_probs=134.9
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCCC-cChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYPD-PESRRLRAALAKDS----G--LESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp~-~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
+.++|+|+.|++++++++.+.+++.+ +. ....|+. .|..+||+++++++ | +++++|++|+|+++++.++++
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~ 109 (385)
T 1b5p_A 30 GVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQ 109 (385)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHH
Confidence 45789999999999999999888765 32 2357865 47899999999997 3 467899999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH--H
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS--W 240 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e--~ 240 (249)
+++++||+|++++|+|..|...++..|++++.++.+ +++.+|+++++++++ .++|+|+++|||||||.+++.++ .
T Consensus 110 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~p~NPtG~~~~~~~l~~ 188 (385)
T 1b5p_A 110 AILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT-PRTKALVVNSPNNPTGAVYPKEVLEA 188 (385)
T ss_dssp HHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC-TTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcC-CCCEEEEEeCCCCCCCCCcCHHHHHH
Confidence 999999999999999999999999999999999975 367899999999997 67999999999999999988764 4
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+..+|++||
T Consensus 189 i~~~~~~~~ 197 (385)
T 1b5p_A 189 LARLAVEHD 197 (385)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 677888875
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=189.40 Aligned_cols=151 Identities=23% Similarity=0.310 Sum_probs=134.1
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCC
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGD 171 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd 171 (249)
...+.|+|+.|+|++++++.+.+++.+ .....+||+.+..+||+++++++++++++|++|+|+++++.+++..+ +||
T Consensus 14 ~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~--~gd 91 (337)
T 3p1t_A 14 AAAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF--SSM 91 (337)
T ss_dssp CCCCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--TTS
T ss_pred CCCCceEeeCCCCCCCCCHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--CCC
Confidence 345789999999999999999999987 44557898888999999999999999999999999999999999987 999
Q ss_pred eEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 172 KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 172 ~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|+++.|+|..|...++..|++++.++.++++.+|+++++++ .++++|++++||||||.+++.+ .+.+++++++
T Consensus 92 ~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~---~~~~~v~i~~p~nptG~~~~~~-~l~~l~~~~~ 165 (337)
T 3p1t_A 92 RFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQV---SRDDCVVLANPSNPTGQALSAG-ELDQLRQRAG 165 (337)
T ss_dssp EEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTC---CTTEEEEEESSCTTTCCCCCHH-HHHHHHHHCS
T ss_pred eEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhh---cCCCEEEEeCCCCCCCCCCCHH-HHHHHHHhCC
Confidence 999999999999999999999999999878889999999876 3679999999999999997655 4566677653
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=186.13 Aligned_cols=172 Identities=26% Similarity=0.361 Sum_probs=145.0
Q ss_pred cCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEe
Q 025730 74 LKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVG 152 (249)
Q Consensus 74 l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt 152 (249)
+.+|.++..+..++..++..+.++|+|+.|++++++++.+.+++.+ +....+|++.+..++|+++++++++++++|++|
T Consensus 3 ~~~~~~g~~~~~~~~~~~~~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~l~~~la~~~~~~~~~v~~~ 82 (364)
T 1lc5_A 3 LFNTAHGGNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDADYFHLHQALARHHQVPASWILAG 82 (364)
T ss_dssp CCCCSSSCCCHHHHHHHTSCGGGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCCTTCHHHHHHHHHHHTSCGGGEEEE
T ss_pred CcccCCCccHHHHHHhcCCCccceEEeccccCCCCCCHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHCcCHHHEEEC
Confidence 4567777777777777887777899999999999999999999876 433467887788999999999999988999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCc
Q 025730 153 CGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNP 230 (249)
Q Consensus 153 ~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNP 230 (249)
+|+++++.+++..+ +||+|+++.|+|..|...++..|++++.++.+. ++.+ ++++.+.++ .++++|++++||||
T Consensus 83 ~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~-~~~~~v~i~~p~np 158 (364)
T 1lc5_A 83 NGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALT-PDLDCLFLCTPNNP 158 (364)
T ss_dssp SSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCC-TTCCEEEEESSCTT
T ss_pred CCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhcc-CCCCEEEEeCCCCC
Confidence 99999999999988 789999999999999999999999999999753 3333 566666665 67899999999999
Q ss_pred cccCCChH--HHHHHHhhhhC
Q 025730 231 DGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~~--e~i~~i~~~~~ 249 (249)
||.+++.+ +.+.++|++||
T Consensus 159 tG~~~~~~~l~~i~~~~~~~~ 179 (364)
T 1lc5_A 159 TGLLPERPLLQAIADRCKSLN 179 (364)
T ss_dssp TCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhhhcC
Confidence 99998765 44777888875
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=184.46 Aligned_cols=170 Identities=28% Similarity=0.447 Sum_probs=141.7
Q ss_pred HHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC----CCCCCCcChHHHHHHHHH
Q 025730 66 FIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF----PYIYPDPESRRLRAALAK 140 (249)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~----~~~Yp~~g~~~lr~~la~ 140 (249)
++++.++.+.+|.++.. ...+.++|+|+.|++++++++.+.+++.+ +.. ..+||+.+..+||+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~--------~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~ 76 (360)
T 3hdo_A 5 PLRQNIASMKGYIPGYQ--------PPDIASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGE 76 (360)
T ss_dssp CCCHHHHHCCCCCCCCC--------CSCCTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHH
T ss_pred hhHHHHHhcCCcCCCCC--------CccccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHH
Confidence 46788888899975432 01345789999999999999999999876 433 467887778999999999
Q ss_pred HcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCce
Q 025730 141 DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPK 220 (249)
Q Consensus 141 ~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k 220 (249)
++|+++++|++|+|+++++.+++.+++++||+|+++.|+|..+...++..|++++.++.++++.+ +++++. .++|
T Consensus 77 ~~g~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~l~~~---~~~~ 151 (360)
T 3hdo_A 77 LYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRI--AGFPER---YEGK 151 (360)
T ss_dssp HHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSB--TTCCSS---BCSS
T ss_pred HhCcCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCH--HHHHhh---cCCC
Confidence 99999999999999999999999999999999999999999999999999999999998766666 444333 3467
Q ss_pred EEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 221 CIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 221 ~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|++++||||||.+++. +.+.++|+++|
T Consensus 152 ~v~i~~p~nptG~~~~~-~~l~~l~~~~~ 179 (360)
T 3hdo_A 152 VFFLTTPNAPLGPSFPL-EYIDELARRCA 179 (360)
T ss_dssp EEEEESSCTTTCCCCCH-HHHHHHHHHBS
T ss_pred EEEEeCCCCCCCCCcCH-HHHHHHHHHCC
Confidence 99999999999999755 45667787764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=187.60 Aligned_cols=156 Identities=24% Similarity=0.350 Sum_probs=135.2
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-cChHHHHHHHHHHc----C---CCCC-CEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-PESRRLRAALAKDS----G---LESD-HILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-~g~~~lr~~la~~~----~---~~~~-~I~vt~Ga~~~l~~~ 162 (249)
+++++|+|+.|++++++++.+.+++.+ +.....|++ .+..++|+++++++ | ++++ +|++|+|+++++.++
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~ 107 (396)
T 3jtx_A 28 EGMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSF 107 (396)
T ss_dssp TTCCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHH
T ss_pred cCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHH
Confidence 356799999999999999999999986 444467865 46899999999987 5 4588 999999999999999
Q ss_pred HHHhcCCC-----CeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 163 MRCVLDPG-----DKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 163 ~~~~~~pG-----d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
+++++++| |+|+++.|+|..|...++..|++++.++.+ +++.+|+++++++++ .++++|++++||||||.+++
T Consensus 108 ~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~-~~~~~v~l~~p~nptG~~~~ 186 (396)
T 3jtx_A 108 VQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVW-KRTKLVFVCSPNNPSGSVLD 186 (396)
T ss_dssp HHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH-HTEEEEEEESSCTTTCCCCC
T ss_pred HHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhc-cCcEEEEEECCCCCCCCcCC
Confidence 99999997 799999999999999999999999999963 456789999999997 58999999999999999988
Q ss_pred hHHH--HHHHhhhhC
Q 025730 237 TSSW--IWGISSEHN 249 (249)
Q Consensus 237 ~~e~--i~~i~~~~~ 249 (249)
.+++ +.++|++||
T Consensus 187 ~~~l~~i~~~~~~~~ 201 (396)
T 3jtx_A 187 LDGWKEVFDLQDKYG 201 (396)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC
Confidence 7754 667888875
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.1e-23 Score=182.80 Aligned_cols=179 Identities=23% Similarity=0.358 Sum_probs=145.7
Q ss_pred HHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCC-cChHHHHHHHHHHc---
Q 025730 69 SHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPD-PESRRLRAALAKDS--- 142 (249)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~-~g~~~lr~~la~~~--- 142 (249)
+++..+.++ +...+.....+....+.++|+|+.|++++++++.+.+++.+ +.. ...|+. .+..++|+++++++
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 83 (388)
T 1j32_A 5 ARVESVSPS-MTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRD 83 (388)
T ss_dssp HHHHTSCCC-SSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hHhHhCCcc-HHHHHHHHHHHHHhcCCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 344445444 23344444444434456789999999999989999988875 322 357865 47899999999997
Q ss_pred -C--CCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccC
Q 025730 143 -G--LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVERE 217 (249)
Q Consensus 143 -~--~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~ 217 (249)
| +++++|++|+|+++++.+++++++++||+|++++|+|..+...++..|++++.++.+. ++.+|+++++++++ .
T Consensus 84 ~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~ 162 (388)
T 1j32_A 84 NGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT-P 162 (388)
T ss_dssp HCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC-T
T ss_pred cCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcC-c
Confidence 4 4678999999999999999999999999999999999999999999999999999753 67899999999998 6
Q ss_pred CceEEEEcCCCCccccCCChH--HHHHHHhhhhC
Q 025730 218 KPKCIFLTSPNNPDGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 218 ~~k~i~l~~PnNPTG~~~~~~--e~i~~i~~~~~ 249 (249)
++++|++++||||||.+++.+ +.+.++|++||
T Consensus 163 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~ 196 (388)
T 1j32_A 163 KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAG 196 (388)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 899999999999999998755 45778888875
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-23 Score=184.32 Aligned_cols=174 Identities=17% Similarity=0.257 Sum_probs=138.8
Q ss_pred hhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCC-cChHHHHHHHHHHcC----
Q 025730 71 LRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPD-PESRRLRAALAKDSG---- 143 (249)
Q Consensus 71 ~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~-~g~~~lr~~la~~~~---- 143 (249)
+..+.++ ....+...+.++...++++|+|+.|++++++++.+.+++.+ +.. ...|+. .+..++|++++++++
T Consensus 8 ~~~~~~~-~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g 86 (391)
T 3h14_A 8 RSAVDPF-IVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYG 86 (391)
T ss_dssp TTCCCCC-TTHHHHHHHHHHHHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHC
T ss_pred HhhcCcc-hHHHHHHHHHHHHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhC
Confidence 3444444 23344445555555667899999999999999999999876 432 367854 468999999999974
Q ss_pred --CCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCc
Q 025730 144 --LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKP 219 (249)
Q Consensus 144 --~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~ 219 (249)
+++++|++|+|+++++.+++.+++++||+|+++.|+|..+...++..|++++.++.+. ++.+|+++++++ ++
T Consensus 87 ~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~----~~ 162 (391)
T 3h14_A 87 VDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL----DL 162 (391)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS----CC
T ss_pred CCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc----CC
Confidence 6789999999999999999999999999999999999999999999999999999753 467899999875 68
Q ss_pred eEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 220 KCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 220 k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++|++++||||||.+++.+++ +.++|++||
T Consensus 163 ~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 194 (391)
T 3h14_A 163 AGLMVASPANPTGTMLDHAAMGALIEAAQAQG 194 (391)
T ss_dssp SEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 999999999999999886644 677888875
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=186.40 Aligned_cols=181 Identities=23% Similarity=0.338 Sum_probs=136.9
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCC-CcChHHHHHHHHHHc
Q 025730 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF--PYIYP-DPESRRLRAALAKDS 142 (249)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp-~~g~~~lr~~la~~~ 142 (249)
+++++..+.++. ...+.....+++..+.++|+|+.|++++++++.+.+++.+ +.. ...|+ ..+..+||+++++++
T Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~ 88 (412)
T 2x5d_A 10 RFARIDRLPPYV-FNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWY 88 (412)
T ss_dssp -----------C-HHHHHHHHHHHHHTTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHH
T ss_pred hhHHHhhcCchH-HHHHHHHHHHHhhcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHH
Confidence 344555555552 2223333444444556789999999999989999999876 432 35684 568899999999998
Q ss_pred ----CC--CC-CCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHh
Q 025730 143 ----GL--ES-DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADA 213 (249)
Q Consensus 143 ----~~--~~-~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~ 213 (249)
|+ ++ ++|++|+|+++++.+++.+++++||+|+++.|+|..|...++..|++++.++.+. ++.+|+++++++
T Consensus 89 ~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~ 168 (412)
T 2x5d_A 89 RDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRE 168 (412)
T ss_dssp HHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHT
T ss_pred HHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHh
Confidence 74 66 6999999999999999999999999999999999999999999999999999754 344789999999
Q ss_pred hccCCceEEEEcCCCCccccCCChH--HHHHHHhhhhC
Q 025730 214 VEREKPKCIFLTSPNNPDGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 214 i~~~~~k~i~l~~PnNPTG~~~~~~--e~i~~i~~~~~ 249 (249)
++ .++++|++++||||||.+++.+ +.+.++|++||
T Consensus 169 i~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~ 205 (412)
T 2x5d_A 169 SI-PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYD 205 (412)
T ss_dssp EE-SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred cc-cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence 98 6899999999999999998865 44778888875
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=182.84 Aligned_cols=152 Identities=19% Similarity=0.382 Sum_probs=133.4
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC-----CCCC-CCcChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF-----PYIY-PDPESRRLRAALAKDS----G--LESDHILVGCGADELIDL 161 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~-----~~~Y-p~~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~ 161 (249)
+++|+|+.|.+++++++.+.+++.+ +.. ...| +..+..+||+++++++ | +++++|++|+|+++++.+
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~ 114 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSI 114 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHH
Confidence 5789999999988899999998876 322 3578 4567899999999987 3 678999999999999999
Q ss_pred HHHHhcCCC-CeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 162 IMRCVLDPG-DKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 162 ~~~~~~~pG-d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
++++++++| |+|+++.|+|..|...++..|++++.++.+ +++.+|+++++++++ .++++|++++||||||.+++.++
T Consensus 115 ~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~p~nptG~~~~~~~ 193 (398)
T 3ele_A 115 CFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERIN-AHTRGVIINSPNNPSGTVYSEET 193 (398)
T ss_dssp HHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCC-TTEEEEEECSSCTTTCCCCCHHH
T ss_pred HHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhC-cCCCEEEEcCCCCCCCCCCCHHH
Confidence 999999999 999999999999999999999999999975 367999999999998 68999999999999999988775
Q ss_pred H--HHHHhhh
Q 025730 240 W--IWGISSE 247 (249)
Q Consensus 240 ~--i~~i~~~ 247 (249)
+ +.++|++
T Consensus 194 l~~l~~~~~~ 203 (398)
T 3ele_A 194 IKKLSDLLEK 203 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4 5567876
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=182.27 Aligned_cols=182 Identities=23% Similarity=0.357 Sum_probs=145.6
Q ss_pred HHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCC-cChHHHHHHHHHHc
Q 025730 66 FIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPD-PESRRLRAALAKDS 142 (249)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~-~g~~~lr~~la~~~ 142 (249)
+++.++..+.++. ...+.....+....++++|+|+.|+++++.++.+.+++.+ +.. ...|+. .+..+||+++++++
T Consensus 13 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~ 91 (389)
T 1o4s_A 13 MVSRRISEIPISK-TMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRI 91 (389)
T ss_dssp -CCHHHHHSCCCS-SHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHhhcCccH-HHHHHHHHHHHHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHH
Confidence 3455555555442 2333333333322345789999999998889999998876 332 357865 47899999999998
Q ss_pred ----CC--CCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhh
Q 025730 143 ----GL--ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAV 214 (249)
Q Consensus 143 ----~~--~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i 214 (249)
|+ ++++|++|+|+++++.+++.+++++||+|++++|+|..+...++..|++++.++.+. ++.+|++++++++
T Consensus 92 ~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 171 (389)
T 1o4s_A 92 GERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLL 171 (389)
T ss_dssp HHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTC
T ss_pred HHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhc
Confidence 65 678999999999999999999999999999999999999999999999999999753 5789999999999
Q ss_pred ccCCceEEEEcCCCCccccCCChH--HHHHHHhhhhC
Q 025730 215 EREKPKCIFLTSPNNPDGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 215 ~~~~~k~i~l~~PnNPTG~~~~~~--e~i~~i~~~~~ 249 (249)
+ .++++|++++||||||.+++.+ +.+.++|++||
T Consensus 172 ~-~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 207 (389)
T 1o4s_A 172 V-GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRN 207 (389)
T ss_dssp C-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred c-cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7 5899999999999999998765 44777888875
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=183.71 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=135.9
Q ss_pred CCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCCcChHHHHHHHHHHcC------CCCCCEEEeCCHHHHHHHHH
Q 025730 92 RKPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPDPESRRLRAALAKDSG------LESDHILVGCGADELIDLIM 163 (249)
Q Consensus 92 ~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~~g~~~lr~~la~~~~------~~~~~I~vt~Ga~~~l~~~~ 163 (249)
..++++|+|+.|++++++++.+.+++.+ +.. ...|++.+ .++|++++++++ +++++|++|+|+++++.+++
T Consensus 20 ~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~ 98 (377)
T 3fdb_A 20 RYGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAI 98 (377)
T ss_dssp SSCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHH
T ss_pred ccCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHH
Confidence 3467899999999999999999999876 433 46786655 889999999987 78899999999999999999
Q ss_pred HHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 164 RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 164 ~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
.+++++||+|+++.|+|..+...++..|++++.++.+.+ +|+++++++++ .++++|++++||||||.+++.+++ +
T Consensus 99 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~-~~~~~v~i~~p~nptG~~~~~~~l~~l 175 (377)
T 3fdb_A 99 DHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG--INLHDVEKGFQ-AGARSILLCNPYNPLGMVFAPEWLNEL 175 (377)
T ss_dssp HHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS--CCHHHHHHHHH-TTCCEEEEESSBTTTTBCCCHHHHHHH
T ss_pred HHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC--CCHHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999997665 99999999998 579999999999999999887654 6
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|++||
T Consensus 176 ~~~~~~~~ 183 (377)
T 3fdb_A 176 CDLAHRYD 183 (377)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 66788875
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-23 Score=181.68 Aligned_cols=151 Identities=25% Similarity=0.467 Sum_probs=132.6
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCC
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGD 171 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd 171 (249)
.++++|+|+.|++++++++.+.+++.+ +....+||+.+..++|+++++++++++++|++|+|+++++.+++..+ |
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~----d 99 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF----E 99 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC----S
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc----C
Confidence 456789999999999999999988876 44457788888999999999999999999999999999999999977 9
Q ss_pred eEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 172 KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 172 ~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+|+++.|+|..+...++..|++++.++.+.+..+++++++++++ . +++|++++||||||.+++.+++ +.++|++||
T Consensus 100 ~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 177 (361)
T 3ftb_A 100 KILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKID-D-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKK 177 (361)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTT-T-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHT
T ss_pred cEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhcc-C-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999987777889999999998 4 9999999999999999887654 677888875
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.5e-23 Score=182.43 Aligned_cols=153 Identities=27% Similarity=0.434 Sum_probs=136.2
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCc-ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeE
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDP-ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKI 173 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~-g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~V 173 (249)
++|+|+.|++++++++.+.+++.+ +.....|+.. +..+||+++++++++++++|++|+|+++++.+++.+++++||+|
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~V 105 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEV 105 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEE
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEE
Confidence 469999999999999999999876 4334678654 78999999999999988999999999999999999999999999
Q ss_pred EEcCCCChhHHHHHHHCCCEEEEecCC---CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH--HHHHHHhhhh
Q 025730 174 VDCPPTFTMYEFDAAVNGAAVVKVPRK---SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS--SWIWGISSEH 248 (249)
Q Consensus 174 lv~~P~y~~~~~~~~~~G~~v~~v~~~---~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~--e~i~~i~~~~ 248 (249)
++++|+|..+...++..|++++.++.+ +++.+|+++++++++ .++++|++++||||||.+++.+ +.+.++|++|
T Consensus 106 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~ 184 (381)
T 1v2d_A 106 VVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT-PRTRALLLNTPMNPTGLVFGERELEAIARLARAH 184 (381)
T ss_dssp EEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred EEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC-cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHc
Confidence 999999999999999999999999975 567899999999997 6899999999999999998765 4577888887
Q ss_pred C
Q 025730 249 N 249 (249)
Q Consensus 249 ~ 249 (249)
|
T Consensus 185 ~ 185 (381)
T 1v2d_A 185 D 185 (381)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-23 Score=184.40 Aligned_cols=180 Identities=22% Similarity=0.334 Sum_probs=142.9
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCC---CCCCCHHHHHHHHh-ccCC-CCCCC-cChHHHHHHHHH
Q 025730 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANEN---PYGPPPEVREALGQ-LKFP-YIYPD-PESRRLRAALAK 140 (249)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~---~~~~p~~v~~al~~-~~~~-~~Yp~-~g~~~lr~~la~ 140 (249)
+++++..+.++ ++..+. .+.+++..++++|+|+.+++ ++++++.+.+++.+ +... ..|+. .+..++|+++++
T Consensus 12 ~~~~~~~~~~~-~~~~~~-~~~~~~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~ 89 (406)
T 1xi9_A 12 ASKRALSVEYA-IRDVVL-PARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVE 89 (406)
T ss_dssp CCHHHHTCCC---------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHH
T ss_pred HHHHHhcCChh-HHHHHH-HHHHHHHcCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH
Confidence 34555555544 333344 44444444567899999999 88888999888865 3322 46865 478999999999
Q ss_pred Hc------CCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHH
Q 025730 141 DS------GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIAD 212 (249)
Q Consensus 141 ~~------~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~ 212 (249)
++ ++++++|++|+|+++++.+++.+++++||+|++++|+|..|...++..|++++.++.+ +++.+|++++++
T Consensus 90 ~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 169 (406)
T 1xi9_A 90 REKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRK 169 (406)
T ss_dssp HHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHH
T ss_pred HHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHH
Confidence 98 4677899999999999999999999999999999999999999999999999999865 356789999999
Q ss_pred hhccCCceEEEEcCCCCccccCCChH--HHHHHHhhhhC
Q 025730 213 AVEREKPKCIFLTSPNNPDGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 213 ~i~~~~~k~i~l~~PnNPTG~~~~~~--e~i~~i~~~~~ 249 (249)
+++ .++++|++++|+||||.+++.+ +.+.++|++||
T Consensus 170 ~l~-~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~ 207 (406)
T 1xi9_A 170 KIT-DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYE 207 (406)
T ss_dssp HCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred hhC-cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcC
Confidence 998 5899999999999999998755 44778888875
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=179.93 Aligned_cols=154 Identities=25% Similarity=0.403 Sum_probs=134.3
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCC-cChHHHHHHHHHHc----C--CCCCC-EEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPD-PESRRLRAALAKDS----G--LESDH-ILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~-~g~~~lr~~la~~~----~--~~~~~-I~vt~Ga~~~l~~~~~ 164 (249)
+++|+|+.|++++++++.+.+++.+ +.. ...|+. .+..++|+++++++ | +++++ |++|+|+++++.+++.
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~ 105 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLS 105 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHT
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHH
Confidence 5689999999999889999988875 332 356865 47899999999998 7 56788 9999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH--HH
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS--SW 240 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~--e~ 240 (249)
+++++||+|++++|+|..+...++..|++++.++.+. ++.+|+++++++++ .++++|++++||||||.+++.+ +.
T Consensus 106 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~l~~ 184 (389)
T 1gd9_A 106 AFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT-DKTRALIINSPCNPTGAVLTKKDLEE 184 (389)
T ss_dssp TTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcC-cCceEEEEECCCCCCCcCCCHHHHHH
Confidence 9999999999999999999999999999999999754 57899999999998 5899999999999999998755 45
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.++|++||
T Consensus 185 l~~~~~~~~ 193 (389)
T 1gd9_A 185 IADFVVEHD 193 (389)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 778888875
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=179.08 Aligned_cols=148 Identities=22% Similarity=0.340 Sum_probs=130.9
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCC-cChHHHHHHHHHHcC------CCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPD-PESRRLRAALAKDSG------LESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~-~g~~~lr~~la~~~~------~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+.++|+|+.|++++++++.+.+++.+ +.. ...|+. .+..+||++++++++ +++++|++|+|+++++.+++
T Consensus 27 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~ 106 (370)
T 2z61_A 27 EGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFAL 106 (370)
T ss_dssp TTCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHH
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHH
Confidence 345789999999999888999988875 332 357865 478999999999984 67789999999999999999
Q ss_pred HHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHH
Q 025730 164 RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWG 243 (249)
Q Consensus 164 ~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~ 243 (249)
.+++++||+|++++|+|..+...++..|++++.++ +|+++++++++ .++++|++++||||||.+++.+ +.+
T Consensus 107 ~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~------~d~~~l~~~l~-~~~~~v~~~~p~nptG~~~~~~--l~~ 177 (370)
T 2z61_A 107 SSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD------FTVESLEEALS-DKTKAIIINSPSNPLGEVIDRE--IYE 177 (370)
T ss_dssp HHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC------SSHHHHHHHCC-SSEEEEEEESSCTTTCCCCCHH--HHH
T ss_pred HHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC------CCHHHHHHhcc-cCceEEEEcCCCCCcCcccCHH--HHH
Confidence 99999999999999999999999999999999997 78999999997 5899999999999999998777 888
Q ss_pred HhhhhC
Q 025730 244 ISSEHN 249 (249)
Q Consensus 244 i~~~~~ 249 (249)
+|++||
T Consensus 178 ~~~~~~ 183 (370)
T 2z61_A 178 FAYENI 183 (370)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 999875
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=180.09 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=135.1
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCCC-cChHHHHHHHHHHc----CCC--CC-CEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LKF--PYIYPD-PESRRLRAALAKDS----GLE--SD-HILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp~-~g~~~lr~~la~~~----~~~--~~-~I~vt~Ga~~~l~~ 161 (249)
++.++|+|+.|++++++++.+.+++.+ +.. ...|++ .+..+||+++++++ |++ ++ +|++|+|+++++.+
T Consensus 23 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (376)
T 2dou_A 23 RGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAH 102 (376)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHH
T ss_pred cCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHH
Confidence 345789999999999989999999876 432 367876 47889999999998 764 45 99999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH--
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS-- 239 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e-- 239 (249)
++++++++||+|+++.|+|..|...++..|++++.++.++++.+|+++++++++ .++++|++++||||||.+++.++
T Consensus 103 ~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~ 181 (376)
T 2dou_A 103 LLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVW-REAKVLLLNYPNNPTGAVADWGYFE 181 (376)
T ss_dssp HHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHH-HHEEEEEECSSCTTTCCCCCHHHHH
T ss_pred HHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhc-cCceEEEECCCCCCcCccCCHHHHH
Confidence 999999999999999999999999999999999999985566789999999886 67899999999999999988654
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+.++|++||
T Consensus 182 ~l~~~~~~~~ 191 (376)
T 2dou_A 182 EALGLARKHG 191 (376)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 4677888875
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=184.78 Aligned_cols=155 Identities=23% Similarity=0.383 Sum_probs=134.9
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCCC-cChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LKF--PYIYPD-PESRRLRAALAKDS----G--LESDHILVGCGADELIDLIM 163 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp~-~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~~~ 163 (249)
..++|+|+.|.+++++|+.+.+++.+ +.. ...|+. .|..+||+++++++ | +++++|++|+|+++++.+++
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~ 135 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCL 135 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHH
Confidence 45789999999999999999999876 433 357854 47899999999997 3 56689999999999999999
Q ss_pred HHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC------------CCCCCHHHHHHhhccCCceEEEEcCCCCcc
Q 025730 164 RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS------------DFSLNVELIADAVEREKPKCIFLTSPNNPD 231 (249)
Q Consensus 164 ~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~------------~~~id~e~l~~~i~~~~~k~i~l~~PnNPT 231 (249)
++++++||+|++++|+|..|...++..|++++.++.+. ++.+|+++|+++++ .++++|++++|||||
T Consensus 136 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~l~~p~npt 214 (447)
T 3b46_A 136 MGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT-SKTKAVIINTPHNPI 214 (447)
T ss_dssp HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC-TTEEEEEEESSCTTT
T ss_pred HHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc-cCCeEEEEeCCCCCC
Confidence 99999999999999999999999999999999998532 47899999999997 689999999999999
Q ss_pred ccCCChH--HHHHHHhhhhC
Q 025730 232 GRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~--e~i~~i~~~~~ 249 (249)
|.+++.+ +.+.++|++||
T Consensus 215 G~~~~~~~l~~i~~l~~~~~ 234 (447)
T 3b46_A 215 GKVFTREELTTLGNICVKHN 234 (447)
T ss_dssp CCCCCHHHHHHHHHHHHHTT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 9998865 44778898875
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-23 Score=181.64 Aligned_cols=152 Identities=20% Similarity=0.251 Sum_probs=131.0
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-cChHHHHHHHHHHc----CC--CCCCEEEeCCHHHHHHHHHHHhc
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-PESRRLRAALAKDS----GL--ESDHILVGCGADELIDLIMRCVL 167 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-~g~~~lr~~la~~~----~~--~~~~I~vt~Ga~~~l~~~~~~~~ 167 (249)
++|+|+.|++++++|+.+.+++.+ +.....|++ .+..++|+++++++ |+ ++++|++|+|+++++.++++.++
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~ 103 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL 103 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc
Confidence 789999999999999999999987 444467865 46899999999987 76 78999999999999999999999
Q ss_pred CC--CCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--HHH
Q 025730 168 DP--GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--IWG 243 (249)
Q Consensus 168 ~p--Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i~~ 243 (249)
++ ||+|+++.|+|..|...++..|++++.++.+++.++++ +++++++ .++++|++++||||||.+++.+++ +.+
T Consensus 104 ~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~-~~~~~v~~~~p~nptG~~~~~~~l~~i~~ 181 (376)
T 3ezs_A 104 FDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKEL-QEVDLVILNSPNNPTGRTLSLEELISWVK 181 (376)
T ss_dssp TTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHH-HHCSEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred CCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhc-cCCCEEEEcCCCCCcCCCCCHHHHHHHHH
Confidence 99 99999999999999999999999999999765545555 6666666 478999999999999999887654 566
Q ss_pred HhhhhC
Q 025730 244 ISSEHN 249 (249)
Q Consensus 244 i~~~~~ 249 (249)
+|++||
T Consensus 182 ~~~~~~ 187 (376)
T 3ezs_A 182 LALKHD 187 (376)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 788875
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=184.23 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=136.5
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-cc-CC-CCCCC-cChHHHHHHHHHHcC------CCCCCEEEeCCHHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LK-FP-YIYPD-PESRRLRAALAKDSG------LESDHILVGCGADELIDLIM 163 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~-~~Yp~-~g~~~lr~~la~~~~------~~~~~I~vt~Ga~~~l~~~~ 163 (249)
++++|+|+.|++++++++.+.+++.+ +. .. ..|+. .+..++|++++++++ +++++|++|+|+++++.+++
T Consensus 43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~ 122 (437)
T 3g0t_A 43 GTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSF 122 (437)
T ss_dssp TCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred CCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHH
Confidence 35789999999999999999999876 33 33 67865 467999999999986 67889999999999999999
Q ss_pred HHhc--CCCC--eEEEcCCCChhHHHHHHHCCCEEEEecC-CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 164 RCVL--DPGD--KIVDCPPTFTMYEFDAAVNGAAVVKVPR-KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 164 ~~~~--~pGd--~Vlv~~P~y~~~~~~~~~~G~~v~~v~~-~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
.+++ ++|| +|+++.|+|..|...++..|++++.++. ++++.+|++++++++++.++++|++++||||||.+++.+
T Consensus 123 ~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~ 202 (437)
T 3g0t_A 123 LVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDE 202 (437)
T ss_dssp HHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHH
T ss_pred HHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHH
Confidence 9998 9999 9999999999999999999999999996 355678999999999447899999999999999998876
Q ss_pred HH--HHHHhhhhC
Q 025730 239 SW--IWGISSEHN 249 (249)
Q Consensus 239 e~--i~~i~~~~~ 249 (249)
++ +.++|++||
T Consensus 203 ~l~~i~~~a~~~~ 215 (437)
T 3g0t_A 203 ELRIIGELATKHD 215 (437)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 54 777898875
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=180.62 Aligned_cols=154 Identities=25% Similarity=0.383 Sum_probs=134.8
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCCC-cChHHHHHHHHHHcC------CCC-CCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF--PYIYPD-PESRRLRAALAKDSG------LES-DHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp~-~g~~~lr~~la~~~~------~~~-~~I~vt~Ga~~~l~~~~ 163 (249)
.++|+|+.|++++++++.+.+++.+ +.. ..+|+. .+..++|++++++++ +++ ++|++|+|+++++.+++
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~ 102 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSI 102 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHH
Confidence 5689999999999999999999886 332 357865 468999999999985 677 79999999999999999
Q ss_pred HHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-----------CCCCCCHHHHHHhhccCCceEEEEcCCCCccc
Q 025730 164 RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-----------SDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232 (249)
Q Consensus 164 ~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-----------~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG 232 (249)
..++++||+|+++.|+|..|...++..|.+++.++.+ .++.+|+++++++++ .++++|++++||||||
T Consensus 103 ~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~-~~~~~v~~~~p~nptG 181 (410)
T 3e2y_A 103 QGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS-SKTKAIILNTPHNPLG 181 (410)
T ss_dssp HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC-TTEEEEEEESSCTTTC
T ss_pred HHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcC-CCceEEEEeCCCCCCC
Confidence 9999999999999999999999999999999999864 356689999999997 6899999999999999
Q ss_pred cCCChHH--HHHHHhhhhC
Q 025730 233 RFSWTSS--WIWGISSEHN 249 (249)
Q Consensus 233 ~~~~~~e--~i~~i~~~~~ 249 (249)
.+++.++ .+.++|++||
T Consensus 182 ~~~~~~~l~~l~~~~~~~~ 200 (410)
T 3e2y_A 182 KVYTRQELQVIADLCVKHD 200 (410)
T ss_dssp CCCCHHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHHHcC
Confidence 9987664 4777888875
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=181.53 Aligned_cols=178 Identities=16% Similarity=0.222 Sum_probs=141.3
Q ss_pred HHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCCC-cChHHHHHHHHHHc-
Q 025730 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF--PYIYPD-PESRRLRAALAKDS- 142 (249)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp~-~g~~~lr~~la~~~- 142 (249)
++++..+.+|. ...+...... .++.++|+|+.|++++++++.+.+++.+ +.. ...|++ .+..+||+++++++
T Consensus 23 ~~~~~~~~~~~-~~~~~~~~~~--~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~ 99 (404)
T 2o1b_A 23 SNKLANIPDSY-FGKTMGRKIE--HGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQ 99 (404)
T ss_dssp CHHHHTSCCCT-TC-------C--CCSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred hhHhhhCCchH-HHHHHHHHHh--cCCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 44555566553 2222222211 2345689999999999989999999876 432 246876 57899999999998
Q ss_pred ---CCC--C-CCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhc
Q 025730 143 ---GLE--S-DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVE 215 (249)
Q Consensus 143 ---~~~--~-~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~ 215 (249)
|++ + ++|++|+|+++++.+++++++++||+|+++.|+|..|...++..|++++.++.+. ++.+|+++++++++
T Consensus 100 ~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~ 179 (404)
T 2o1b_A 100 RQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQII 179 (404)
T ss_dssp HHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH
T ss_pred HHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhc
Confidence 864 4 7999999999999999999999999999999999999999999999999999754 56689999999886
Q ss_pred cCCceEEEEcCCCCccccCCChH--HHHHHHhhhhC
Q 025730 216 REKPKCIFLTSPNNPDGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 216 ~~~~k~i~l~~PnNPTG~~~~~~--e~i~~i~~~~~ 249 (249)
.++++|++++||||||.+++.+ +.+.++|++||
T Consensus 180 -~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~ 214 (404)
T 2o1b_A 180 -DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTD 214 (404)
T ss_dssp -HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSS
T ss_pred -cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 5789999999999999998765 44777888875
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=181.38 Aligned_cols=154 Identities=23% Similarity=0.342 Sum_probs=134.4
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC---CCCCCC-cChHHHHHHHHHHcC------CCC-CCEEEeCCHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF---PYIYPD-PESRRLRAALAKDSG------LES-DHILVGCGADELIDLI 162 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~---~~~Yp~-~g~~~lr~~la~~~~------~~~-~~I~vt~Ga~~~l~~~ 162 (249)
.++|+|+.|++++++++.+.+++.+ +.. ...|+. .+..++|++++++++ +++ ++|++|+|+++++.++
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~ 107 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTA 107 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHH
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHH
Confidence 4689999999999999999999876 333 257865 478999999999985 666 6999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC------------CCCCCHHHHHHhhccCCceEEEEcCCCCc
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS------------DFSLNVELIADAVEREKPKCIFLTSPNNP 230 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~------------~~~id~e~l~~~i~~~~~k~i~l~~PnNP 230 (249)
+..++++||+|+++.|+|..|...++..|++++.++.+. ++.+|+++++++++ .++++|++++||||
T Consensus 108 ~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~-~~~~~v~~~~p~np 186 (422)
T 3fvs_A 108 FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT-SRTKALVLNTPNNP 186 (422)
T ss_dssp HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC-TTEEEEEEESSCTT
T ss_pred HHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcC-CCceEEEECCCCCC
Confidence 999999999999999999999999999999999999653 45689999999998 68999999999999
Q ss_pred cccCCChH--HHHHHHhhhhC
Q 025730 231 DGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~~--e~i~~i~~~~~ 249 (249)
||.+++.+ +.+..+|++||
T Consensus 187 tG~~~~~~~l~~i~~~~~~~~ 207 (422)
T 3fvs_A 187 LGKVFSREELELVASLCQQHD 207 (422)
T ss_dssp TCCCCCHHHHHHHHHHHHHHT
T ss_pred CCcCCCHHHHHHHHHHHHHcC
Confidence 99998765 44778888875
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=174.56 Aligned_cols=154 Identities=20% Similarity=0.408 Sum_probs=134.4
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCC-cChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPD-PESRRLRAALAKDS----G--LESD-HILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~-~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~~~~ 164 (249)
.++|+|+.|++++++++.+.+++.+ +.. ...|+. .+..+||+++++++ | ++++ +|++|+|+++++.++++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~ 109 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAIT 109 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHH
Confidence 3579999999999889999999876 433 367865 47899999999995 5 5678 99999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH--HHH
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS--SWI 241 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~--e~i 241 (249)
+++++||+|+++.|+|..+...++..|++++.++.+. ++.+|+++++++++ .++++|++++||||||.+++.+ +.+
T Consensus 110 ~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~i 188 (386)
T 1u08_A 110 ALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS-ERTRLVILNTPHNPSATVWQQADFAAL 188 (386)
T ss_dssp HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhc-ccCEEEEEeCCCCCCCccCCHHHHHHH
Confidence 9999999999999999999999999999999999754 57899999999997 6899999999999999998765 447
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|++||
T Consensus 189 ~~~~~~~~ 196 (386)
T 1u08_A 189 WQAIAGHE 196 (386)
T ss_dssp HHHHTTSC
T ss_pred HHHHHHcC
Confidence 78888875
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=182.66 Aligned_cols=156 Identities=21% Similarity=0.360 Sum_probs=135.7
Q ss_pred CCCCeeeccCCCCC----CCCCHHHHHHHHh-cc--CCCCC-CCcChHHHHHHHHHHcC-----CCCCCEEEeCCHHHHH
Q 025730 93 KPEDIVKIDANENP----YGPPPEVREALGQ-LK--FPYIY-PDPESRRLRAALAKDSG-----LESDHILVGCGADELI 159 (249)
Q Consensus 93 ~~~~~I~L~~~~~~----~~~p~~v~~al~~-~~--~~~~Y-p~~g~~~lr~~la~~~~-----~~~~~I~vt~Ga~~~l 159 (249)
+.+++|+|+.|.+. +++++.+.+++.+ +. ....| +..+..++|++++++++ +++++|++|+|+++++
T Consensus 52 ~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al 131 (427)
T 3dyd_A 52 PNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAI 131 (427)
T ss_dssp TTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHH
T ss_pred CCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHH
Confidence 34578999999864 6888999999876 32 23578 55789999999999998 7889999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
.+++..++++||+|+++.|+|..|...++..|++++.++.+ .++.+|+++++++++ .++++|++++||||||.+++.
T Consensus 132 ~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~i~~p~nptG~~~~~ 210 (427)
T 3dyd_A 132 DLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLID-EKTACLIVNNPSNPCGSVFSK 210 (427)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCC-TTEEEEEEESSCTTTCCCCCH
T ss_pred HHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhc-cCCCEEEEECCCCCCCCCCCH
Confidence 99999999999999999999999999999999999999853 467899999999997 579999999999999999887
Q ss_pred HH--HHHHHhhhhC
Q 025730 238 SS--WIWGISSEHN 249 (249)
Q Consensus 238 ~e--~i~~i~~~~~ 249 (249)
++ .+.++|+++|
T Consensus 211 ~~l~~i~~~~~~~~ 224 (427)
T 3dyd_A 211 RHLQKILAVAARQC 224 (427)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 64 4777888875
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=177.57 Aligned_cols=165 Identities=11% Similarity=0.055 Sum_probs=131.6
Q ss_pred HHHHHHHhCC-CCCCeeeccCCCC-----CCCCCHHHHHHHHhc----cCCCCC-CCcChHHHHHHHHHHc-C-----CC
Q 025730 83 FEVLSIQLGR-KPEDIVKIDANEN-----PYGPPPEVREALGQL----KFPYIY-PDPESRRLRAALAKDS-G-----LE 145 (249)
Q Consensus 83 ~~~~~~~~g~-~~~~~I~L~~~~~-----~~~~p~~v~~al~~~----~~~~~Y-p~~g~~~lr~~la~~~-~-----~~ 145 (249)
+..+...+.. ..+++|+|+.|++ ++++++.+.++.. + ...+.| |..|.++||+++++++ + ++
T Consensus 16 i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~ 94 (405)
T 3k7y_A 16 ILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIE 94 (405)
T ss_dssp HHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTT
T ss_pred HHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCcccc
Confidence 4444444433 3467899999973 2456788888855 3 233679 5679999999999997 2 24
Q ss_pred CCC--EEEeCCHHHHHHHHHHHhcC--CCCeEEEcCCCChhHHHHHHHCCCEEEEecC-C-CCCCCCHHHHHHhhcc-CC
Q 025730 146 SDH--ILVGCGADELIDLIMRCVLD--PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR-K-SDFSLNVELIADAVER-EK 218 (249)
Q Consensus 146 ~~~--I~vt~Ga~~~l~~~~~~~~~--pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~-~-~~~~id~e~l~~~i~~-~~ 218 (249)
+++ |++|.|+++++.+++..++. | |+|++++|+|..|...++..|++++.++. + +++++|++++++++++ .+
T Consensus 95 ~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 173 (405)
T 3k7y_A 95 DKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPN 173 (405)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCS
T ss_pred ccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCC
Confidence 454 59999999999999999887 9 99999999999999999999999999996 3 3589999999999974 35
Q ss_pred ceEEEEcCC-CCccccCCChHHH--HHHHhhhhC
Q 025730 219 PKCIFLTSP-NNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 219 ~k~i~l~~P-nNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+++|++++| |||||.+++.+++ +..+|++||
T Consensus 174 ~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~ 207 (405)
T 3k7y_A 174 GSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKK 207 (405)
T ss_dssp SCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 688888765 8999999998865 667888775
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=174.74 Aligned_cols=156 Identities=20% Similarity=0.275 Sum_probs=133.3
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCCcChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPDPESRRLRAALAKDS----G--LESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+.++|+|+.+++++++++.+.+++.+ +.. ...|+.. ..++++++++++ | +++++|++|+|+++++.+++.
T Consensus 25 ~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~-~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~ 103 (391)
T 3dzz_A 25 LKEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESV-PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVR 103 (391)
T ss_dssp CCTTCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCC-CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHH
T ss_pred cCCCceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCC-CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHH
Confidence 345789999999999999999999986 433 3567544 577888777775 5 678899999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC---CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH--
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK---SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS-- 239 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~---~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e-- 239 (249)
+++++||+|+++.|+|..+...++..|++++.++.+ .++.+|++++++++++.++++|++++||||||.+++.++
T Consensus 104 ~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~ 183 (391)
T 3dzz_A 104 QFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVK 183 (391)
T ss_dssp HHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHH
T ss_pred HhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHH
Confidence 999999999999999999999999999999999973 334599999999997568999999999999999988764
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+.++|++||
T Consensus 184 ~i~~~~~~~~ 193 (391)
T 3dzz_A 184 RIAELCAKHQ 193 (391)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 4677888875
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=175.75 Aligned_cols=159 Identities=17% Similarity=0.291 Sum_probs=135.3
Q ss_pred hCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCCCcChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHH
Q 025730 90 LGRKPEDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYPDPESRRLRAALAKDS----G--LESDHILVGCGADELIDL 161 (249)
Q Consensus 90 ~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp~~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~ 161 (249)
+|..+.++|+|+.+++++++++.+.+++.+ +. ....|+.. ..++|+++++++ | +++++|++|+|+++++.+
T Consensus 26 ~g~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~ 104 (399)
T 1c7n_A 26 NPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP-TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFN 104 (399)
T ss_dssp CTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC-CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred ccccCCCceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC-cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHH
Confidence 443335789999999999999999999876 32 33678765 899999999985 6 678899999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-C--CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-S--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
++++++++||+|+++.|+|..+...++..|++++.++.+ + ++.+|++++++++++.++++|++++||||||.+++.+
T Consensus 105 ~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~ 184 (399)
T 1c7n_A 105 AVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKD 184 (399)
T ss_dssp HHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHH
T ss_pred HHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHH
Confidence 999999999999999999999999999999999999864 2 3459999999999756899999999999999998765
Q ss_pred --HHHHHHhhhhC
Q 025730 239 --SWIWGISSEHN 249 (249)
Q Consensus 239 --e~i~~i~~~~~ 249 (249)
+.+.++|++||
T Consensus 185 ~l~~i~~~~~~~~ 197 (399)
T 1c7n_A 185 ELQKIKDIVLKSD 197 (399)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHcC
Confidence 44777888875
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=175.54 Aligned_cols=154 Identities=18% Similarity=0.282 Sum_probs=132.0
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCCcChHH-HHHHHHHHc----C--CCCCCEEEeCCHHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPDPESRR-LRAALAKDS----G--LESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~~g~~~-lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
+++|+|+.+++++++++.+.+++.+ +.. ...|+.. ..+ ||+++++++ | +++++|++|+|+++++.+++++
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~-~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~ 106 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRW-KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ 106 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCS-CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCCCCC-ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHH
Confidence 4689999999999999999999876 332 3678765 677 999999986 5 6788999999999999999999
Q ss_pred hcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC---CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH--HH
Q 025730 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS---DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS--SW 240 (249)
Q Consensus 166 ~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~---~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~--e~ 240 (249)
++++||+|+++.|+|..+...++..|++++.++.+. +|.+|++++++++++.++++|++++||||||.+++.+ +.
T Consensus 107 l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~ 186 (390)
T 1d2f_A 107 WSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEI 186 (390)
T ss_dssp SSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred hcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHH
Confidence 999999999999999999999999999999999642 3468999999999744799999999999999998765 44
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.++|++||
T Consensus 187 l~~~~~~~~ 195 (390)
T 1d2f_A 187 MADLCERHG 195 (390)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 778888875
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=174.52 Aligned_cols=151 Identities=23% Similarity=0.446 Sum_probs=130.8
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-cc----CCCCCCCcChHHHHHHHHHH------cCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LK----FPYIYPDPESRRLRAALAKD------SGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~----~~~~Yp~~g~~~lr~~la~~------~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
.|+|+.|++++++++.+.+++.+ +. ...+|++....+++++++++ +++++++|++|+|+++++.+++.+
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~ 111 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQA 111 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHH
Confidence 39999999999999999988875 32 14678765457999999999 567788999999999999999999
Q ss_pred hcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHh
Q 025730 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGIS 245 (249)
Q Consensus 166 ~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~ 245 (249)
++++||+|++++|+|..+...++..|++++.++.++++.+|++++++++++.++++|++++||||||.+++ .+.+..++
T Consensus 112 l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-~~~l~~l~ 190 (369)
T 3cq5_A 112 FGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTS-LDDVERII 190 (369)
T ss_dssp HCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCC-HHHHHHHH
T ss_pred hcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCC-HHHHHHHH
Confidence 99999999999999999999999999999999987778999999999997337899999999999999975 56666666
Q ss_pred hhh
Q 025730 246 SEH 248 (249)
Q Consensus 246 ~~~ 248 (249)
+.+
T Consensus 191 ~~~ 193 (369)
T 3cq5_A 191 NVA 193 (369)
T ss_dssp HHC
T ss_pred HhC
Confidence 654
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=176.68 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=133.0
Q ss_pred CCeeeccCCCC----CCCCCHHHHHHHHh-ccC--CCCCCC-cChHHHHHHHHHHcC------------CCCCCEEEeCC
Q 025730 95 EDIVKIDANEN----PYGPPPEVREALGQ-LKF--PYIYPD-PESRRLRAALAKDSG------------LESDHILVGCG 154 (249)
Q Consensus 95 ~~~I~L~~~~~----~~~~p~~v~~al~~-~~~--~~~Yp~-~g~~~lr~~la~~~~------------~~~~~I~vt~G 154 (249)
.++|+|+.|.+ .+++++.+.+++.+ +.. ...|+. .+..+||++++++++ +++++|++|+|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 56899999986 57888999998876 322 357854 578999999999998 77899999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCCCccc
Q 025730 155 ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232 (249)
Q Consensus 155 a~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG 232 (249)
+++++.+++.+++++||+|++++|+|..|...++..|++++.++.+. ++.+|+++++++++ .++++|++++||||||
T Consensus 113 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~v~i~~p~nptG 191 (416)
T 1bw0_A 113 GSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD-DKTKLLIVTNPSNPCG 191 (416)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC-TTEEEEEEESSCTTTC
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhc-cCCeEEEEeCCCCCCC
Confidence 99999999999999999999999999999999999999999998543 47799999999997 6789999999999999
Q ss_pred cCCChH--HHHHHHhhhhC
Q 025730 233 RFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 233 ~~~~~~--e~i~~i~~~~~ 249 (249)
.+++.+ +.+.++|++||
T Consensus 192 ~~~~~~~l~~i~~~~~~~~ 210 (416)
T 1bw0_A 192 SNFSRKHVEDIVRLAEELR 210 (416)
T ss_dssp CCCCHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHcC
Confidence 998765 44777888875
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=175.93 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=130.6
Q ss_pred CCCeeeccCC---CCCCCCC--HHHHHHHHh-cc--CCCCCC-CcChHHHHHHHHHHcCC------CCC--CEEEeCCHH
Q 025730 94 PEDIVKIDAN---ENPYGPP--PEVREALGQ-LK--FPYIYP-DPESRRLRAALAKDSGL------ESD--HILVGCGAD 156 (249)
Q Consensus 94 ~~~~I~L~~~---~~~~~~p--~~v~~al~~-~~--~~~~Yp-~~g~~~lr~~la~~~~~------~~~--~I~vt~Ga~ 156 (249)
.+++|+|+.| +++..+| +.+.+++.+ +. ....|+ ..|..+||+++++++.- +++ +|++|+|++
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t 127 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGT 127 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccH
Confidence 3578999999 5666555 889998876 33 235784 46899999999999832 567 899999999
Q ss_pred HHHHHHH--HHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhcc--CCceEEEEcCCCCc
Q 025730 157 ELIDLIM--RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVER--EKPKCIFLTSPNNP 230 (249)
Q Consensus 157 ~~l~~~~--~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~--~~~k~i~l~~PnNP 230 (249)
+++.+++ ..++++||+|++++|+|..|...++..|++++.++. ++++.+|++.+++++++ .+++++++++||||
T Consensus 128 ~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NP 207 (420)
T 4f4e_A 128 GALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNP 207 (420)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTT
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 9999994 466899999999999999999999999999999997 45789999999999974 46789999999999
Q ss_pred cccCCChHHH--HHHHhhhhC
Q 025730 231 DGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~~e~--i~~i~~~~~ 249 (249)
||.+++.+++ +.++|++||
T Consensus 208 tG~~~~~~~l~~i~~~~~~~~ 228 (420)
T 4f4e_A 208 TGVDLNDAQWAQVVEVVKARR 228 (420)
T ss_dssp TCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 9999987754 677888875
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-21 Score=172.25 Aligned_cols=157 Identities=15% Similarity=0.082 Sum_probs=130.2
Q ss_pred CCCCeeeccCC---CCCCCCC--HHHHHHHHh-c-c--CCCCCCC-cChHHHHHHHHHHcCC------CCC--CEEEeCC
Q 025730 93 KPEDIVKIDAN---ENPYGPP--PEVREALGQ-L-K--FPYIYPD-PESRRLRAALAKDSGL------ESD--HILVGCG 154 (249)
Q Consensus 93 ~~~~~I~L~~~---~~~~~~p--~~v~~al~~-~-~--~~~~Yp~-~g~~~lr~~la~~~~~------~~~--~I~vt~G 154 (249)
..+++|+|+.| +++..+| +.+.+++.+ . . ....|+. .|..++|++++++++. +++ +|++|+|
T Consensus 24 ~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g 103 (397)
T 3fsl_A 24 PRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLG 103 (397)
T ss_dssp CCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred CCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCC
Confidence 34678999999 4555554 889988865 3 2 2357854 6889999999999842 678 8999999
Q ss_pred HHHHHHHHH--HHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhcc--CCceEEEEcCCC
Q 025730 155 ADELIDLIM--RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVER--EKPKCIFLTSPN 228 (249)
Q Consensus 155 a~~~l~~~~--~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~--~~~k~i~l~~Pn 228 (249)
+++++.+++ ..++++||+|+++.|+|..|...++..|++++.++. ++++.+|++++++++++ .+++++++++||
T Consensus 104 ~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~ 183 (397)
T 3fsl_A 104 GSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCH 183 (397)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSC
T ss_pred cHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 999999995 456799999999999999999999999999999997 46788999999999974 467899999999
Q ss_pred CccccCCChHHH--HHHHhhhhC
Q 025730 229 NPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 229 NPTG~~~~~~e~--i~~i~~~~~ 249 (249)
||||.+++.+++ +..+|++||
T Consensus 184 nptG~~~~~~~l~~l~~~~~~~~ 206 (397)
T 3fsl_A 184 NPTGADLTNDQWDAVIEILKARE 206 (397)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCCCHHHHHHHHHHHHhCC
Confidence 999999887744 677888875
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=175.62 Aligned_cols=153 Identities=24% Similarity=0.308 Sum_probs=133.5
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC----CCCCCC-cChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF----PYIYPD-PESRRLRAALAKDS----G--LESD-HILVGCGADELIDLI 162 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~----~~~Yp~-~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~~ 162 (249)
++|+|+.|++++++++.+.+++.+ +.. ...|+. .+..+|++++++++ | ++++ +|++|+|+++++.++
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 117 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT 117 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHH
Confidence 579999999999999999999876 332 357865 47899999999996 6 5678 999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC----------CCCCCHHHHHHhhccCCceEEEEcCCCCccc
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS----------DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~----------~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG 232 (249)
+++++++||+|+++.|+|..|...++..|++++.++.+. ++.+|+++++++++ .++++|++++||||||
T Consensus 118 ~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~p~nptG 196 (429)
T 1yiz_A 118 IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN-EKTKMIIINTPHNPLG 196 (429)
T ss_dssp HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC-TTEEEEEEESSCTTTC
T ss_pred HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc-cCceEEEECCCCCCCC
Confidence 999999999999999999999999999999999999654 46799999999997 6899999999999999
Q ss_pred cCCChH--HHHHHHhhhhC
Q 025730 233 RFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 233 ~~~~~~--e~i~~i~~~~~ 249 (249)
.+++.+ +.+.++|++||
T Consensus 197 ~~~~~~~l~~i~~~~~~~~ 215 (429)
T 1yiz_A 197 KVMDRAELEVVANLCKKWN 215 (429)
T ss_dssp CCCCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHcC
Confidence 998755 45778898875
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=174.92 Aligned_cols=168 Identities=13% Similarity=0.108 Sum_probs=131.2
Q ss_pred cHHHHHHHhCCC-CCCeeeccCCCC-CCCCC----HHHHHHHHhc-c--CCCCCCC-cChHHHHHHHHHHcC------CC
Q 025730 82 PFEVLSIQLGRK-PEDIVKIDANEN-PYGPP----PEVREALGQL-K--FPYIYPD-PESRRLRAALAKDSG------LE 145 (249)
Q Consensus 82 ~~~~~~~~~g~~-~~~~I~L~~~~~-~~~~p----~~v~~al~~~-~--~~~~Yp~-~g~~~lr~~la~~~~------~~ 145 (249)
.+..+...+... .+++|+|+.|.+ ++..+ +.+.+++... . ....|+. .|.++||++++++++ ++
T Consensus 14 ~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~ 93 (401)
T 7aat_A 14 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFK 93 (401)
T ss_dssp HHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccc
Confidence 344444443322 345899999996 55332 3577776652 2 3467854 689999999999984 34
Q ss_pred CCCEEE--eCCHHHHHHHHHHHhc---CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhcc--
Q 025730 146 SDHILV--GCGADELIDLIMRCVL---DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVER-- 216 (249)
Q Consensus 146 ~~~I~v--t~Ga~~~l~~~~~~~~---~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~-- 216 (249)
+++|++ |+|+++++.+++..+. +|||+|++++|+|..|...++..|++++.++.+ +++++|++.+++.+++
T Consensus 94 ~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 173 (401)
T 7aat_A 94 SGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP 173 (401)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC
T ss_pred cCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCC
Confidence 889977 9999999999887654 899999999999999999999999999999963 4688999988877753
Q ss_pred CCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 217 EKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 217 ~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
.++++|++++||||||.+++.+++ +.++|++||
T Consensus 174 ~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~ 208 (401)
T 7aat_A 174 EKSIILLHACAHNPTGVDPRQEQWKELASVVKKRN 208 (401)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCC
Confidence 568999999999999999887754 677888875
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=174.58 Aligned_cols=153 Identities=27% Similarity=0.430 Sum_probs=133.1
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCC-cChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPD-PESRRLRAALAKDS----G--LESD-HILVGCGADELIDLIMRC 165 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~-~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~~~~~ 165 (249)
+.|+|+.|++++++++.+.+++.+ +.. ...|+. .+..+||+++++++ | ++++ +|++|+|+++++.+++++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~ 105 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLG 105 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHH
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHH
Confidence 579999999999889999999876 433 367865 46899999999997 6 4677 999999999999999999
Q ss_pred hcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC---CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH--HH
Q 025730 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS---DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS--SW 240 (249)
Q Consensus 166 ~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~---~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~--e~ 240 (249)
++++||+|+++.|+|..+...++..|++++.++.+. ++.+|+++++++++ .++++|++++|+||||.+++.+ +.
T Consensus 106 ~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~-~~~~~v~l~~~~nptG~~~~~~~l~~ 184 (411)
T 2o0r_A 106 LVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT-PRTRALIINSPHNPTGAVLSATELAA 184 (411)
T ss_dssp HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred hcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc-cCceEEEEeCCCCCCCCCCCHHHHHH
Confidence 999999999999999999999999999999999653 36799999999997 6899999999999999998765 45
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.++|++||
T Consensus 185 i~~~~~~~~ 193 (411)
T 2o0r_A 185 IAEIAVAAN 193 (411)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 778888875
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-21 Score=170.07 Aligned_cols=152 Identities=18% Similarity=0.331 Sum_probs=129.2
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCCcChHHHHHHHHHH----cC--CCCCCEEEeCCHHHHHHHHHHHh
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPDPESRRLRAALAKD----SG--LESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~~g~~~lr~~la~~----~~--~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.++|+|+.+++++++++.+.+++.+ +.. .+.|+. +..+++++++++ +| +++++|++|+|+++++.+++.++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~ 110 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT-RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINEL 110 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC-CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC-CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHh
Confidence 6789999999999999999999976 432 356654 346666666665 56 67889999999999999999999
Q ss_pred cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC----CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--
Q 025730 167 LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK----SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW-- 240 (249)
Q Consensus 167 ~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~----~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~-- 240 (249)
+++||+|+++.|+|..+...++..|++++.++.+ .++.+|+++++++++ . +++|++++||||||.+++.+++
T Consensus 111 ~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~-~-~~~v~i~~p~nptG~~~~~~~l~~ 188 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK-D-VKLFILCNPHNPVGRVWTKDELKK 188 (391)
T ss_dssp SCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT-T-EEEEEEESSBTTTTBCCCHHHHHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh-c-CCEEEEECCCCCCCcCcCHHHHHH
Confidence 9999999999999999999999999999999975 335589999999998 4 9999999999999999887644
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.++|++||
T Consensus 189 i~~~~~~~~ 197 (391)
T 4dq6_A 189 LGDICLKHN 197 (391)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 677888875
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=171.32 Aligned_cols=142 Identities=26% Similarity=0.376 Sum_probs=122.8
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-c--cCCCCCCCcChHHHHHHHHHHcC---CCCCCEEEeCCHHHHHHHHHHHhcC
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-L--KFPYIYPDPESRRLRAALAKDSG---LESDHILVGCGADELIDLIMRCVLD 168 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~--~~~~~Yp~~g~~~lr~~la~~~~---~~~~~I~vt~Ga~~~l~~~~~~~~~ 168 (249)
++.|+|+.|++++++++.+.+++.+ + ....+|++.+..++|++++++++ +++++|++|+|+++++.++++.+
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~-- 96 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF-- 96 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS--
T ss_pred CcceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh--
Confidence 4679999999999999999999886 4 22367887778999999999999 88899999999999999999987
Q ss_pred CCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh
Q 025730 169 PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 169 pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
||+|+++ |+|..|...++..|++++.++.++++.+|++++ .++++|++++||||||.+++.+ .+.++++.
T Consensus 97 -gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l------~~~~~v~l~~p~nptG~~~~~~-~l~~l~~~ 166 (335)
T 1uu1_A 97 -DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV------GEGDVVFIPNPNNPTGHVFERE-EIERILKT 166 (335)
T ss_dssp -SEEEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC------CTTEEEEEESSCTTTCCCCCHH-HHHHHHHT
T ss_pred -CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc------CCCCEEEEeCCCCCCCCCCCHH-HHHHHHHh
Confidence 8999999 999999999999999999999877778888776 3689999999999999997555 55555543
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=175.02 Aligned_cols=179 Identities=21% Similarity=0.323 Sum_probs=143.7
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCC-cChHHHHHHHHHHcC
Q 025730 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPD-PESRRLRAALAKDSG 143 (249)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~-~g~~~lr~~la~~~~ 143 (249)
.++++..+.++ +...+..........+.++|+|+.|++++++++.+.+++ + +.. ...|+. .+..+++++++++++
T Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~ 93 (409)
T 2gb3_A 16 FSDRVLLTEES-PIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYK 93 (409)
T ss_dssp CCHHHHSCCCC-TTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHhhcCCcc-HHHHHHHHHHHHHhcCCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHH
Confidence 45556655555 233444444443334567899999999988888999998 6 543 356865 478999999999973
Q ss_pred ------CCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC--CCCCCHHHHHHhhc
Q 025730 144 ------LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVE 215 (249)
Q Consensus 144 ------~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~--~~~id~e~l~~~i~ 215 (249)
+++++|++|+|+++++.+++.+++++||+|+++.|+|..+...++..|++++.++.+. ++.+ +++|+++++
T Consensus 94 ~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~ 172 (409)
T 2gb3_A 94 RRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN 172 (409)
T ss_dssp HTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC
T ss_pred HHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC
Confidence 5678999999999999999999999999999999999999999999999999999753 4555 889999987
Q ss_pred cCCceEEEEcCCCCccccCCChH--HHHHHHhhhhC
Q 025730 216 REKPKCIFLTSPNNPDGRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 216 ~~~~k~i~l~~PnNPTG~~~~~~--e~i~~i~~~~~ 249 (249)
.++++|++++||||||.+++.+ +.+.++|++||
T Consensus 173 -~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~ 207 (409)
T 2gb3_A 173 -ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHG 207 (409)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred -cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcC
Confidence 5899999999999999998765 45778888875
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-21 Score=170.15 Aligned_cols=141 Identities=24% Similarity=0.365 Sum_probs=121.1
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeE
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKI 173 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~V 173 (249)
+++|||+.|++++++++.+.+++.+ +....+||+....+||+++++++++++++|++|+|+++++.++++++. ||+|
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--gd~V 92 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--GSRS 92 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT--TCEE
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC--CCEE
Confidence 6789999999999999999999886 444467877656899999999999999999999999999999999887 9999
Q ss_pred EEcCCCChhHHHHHHHCCCEEEEecC-CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh
Q 025730 174 VDCPPTFTMYEFDAAVNGAAVVKVPR-KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 174 lv~~P~y~~~~~~~~~~G~~v~~v~~-~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
+++.|+|..+...++..|++++.++. ++..++++ .++++|++++||||||.+++.++ +.+|++.
T Consensus 93 i~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~---------~~~~~v~i~~p~nptG~~~~~~~-l~~l~~~ 157 (350)
T 3fkd_A 93 LIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF---------SNMDFCWLCNPNNPDGRLLQRTE-ILRLLND 157 (350)
T ss_dssp EEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC---------TTCSEEEEESSCTTTCCCCCHHH-HHHHHHH
T ss_pred EEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc---------CCCCEEEEeCCCCCcCCCCCHHH-HHHHHHh
Confidence 99999999999999999999999997 55444543 47899999999999999987665 4445543
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-22 Score=179.42 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=131.0
Q ss_pred CCeeeccCCCC-CCCCCHHH--HHHHHh-cc--CCCCCCCc-ChHHHHHHHHHHc-----CCCCCC---EEEeCCHHHHH
Q 025730 95 EDIVKIDANEN-PYGPPPEV--REALGQ-LK--FPYIYPDP-ESRRLRAALAKDS-----GLESDH---ILVGCGADELI 159 (249)
Q Consensus 95 ~~~I~L~~~~~-~~~~p~~v--~~al~~-~~--~~~~Yp~~-g~~~lr~~la~~~-----~~~~~~---I~vt~Ga~~~l 159 (249)
+++|+|+.|++ +++.++.+ .+++.+ +. ....|++. |..+||+++++++ ++++++ |++|+|+++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al 126 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGL 126 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHH
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHH
Confidence 46799999999 88877766 666654 32 23678654 7999999999999 888888 99999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCChhHHHHHHH-CCCEEEEecCCC-CCCCCHHHHHHhhcc--CCceEEEEcCCCCccccCC
Q 025730 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDAAV-NGAAVVKVPRKS-DFSLNVELIADAVER--EKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~-~G~~v~~v~~~~-~~~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~ 235 (249)
.+++++++++||+|++++|+|..|...++. .|++++.++.+. ++.+|++++++++++ .++++|++++||||||.++
T Consensus 127 ~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~ 206 (430)
T 2x5f_A 127 SLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTP 206 (430)
T ss_dssp HHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCC
T ss_pred HHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcC
Confidence 999999999999999999999999999999 999999999654 478999999999973 2789999999999999998
Q ss_pred ChH--HHHHHHhhh
Q 025730 236 WTS--SWIWGISSE 247 (249)
Q Consensus 236 ~~~--e~i~~i~~~ 247 (249)
+.+ +.+.++|++
T Consensus 207 ~~~~l~~i~~~~~~ 220 (430)
T 2x5f_A 207 THKEVTTIVEAIKA 220 (430)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 765 346778877
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=173.95 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=137.4
Q ss_pred hhccCCCCCCCcHHHHHHHhCCCC-CCeeeccCCCC-CCCC----CHHHHHHHHhc-----cCCCCC-CCcChHHHHHHH
Q 025730 71 LRKLKPYQPILPFEVLSIQLGRKP-EDIVKIDANEN-PYGP----PPEVREALGQL-----KFPYIY-PDPESRRLRAAL 138 (249)
Q Consensus 71 ~~~l~~~~~~~~~~~~~~~~g~~~-~~~I~L~~~~~-~~~~----p~~v~~al~~~-----~~~~~Y-p~~g~~~lr~~l 138 (249)
+..+.+. +..++..+...+...+ +.+|+|+.|.+ ++.. .+.+.+++..+ .....| +..|..+||+++
T Consensus 25 ~~~~~~~-~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~i 103 (448)
T 3meb_A 25 FSGFPAS-PPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAA 103 (448)
T ss_dssp TTTCCCC-CCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHH
T ss_pred HhcCCCC-CCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHH
Confidence 3444444 3344555555444333 45799999987 5533 35677774432 223678 456899999999
Q ss_pred HHHc-CCC-----CCCEEE--eCCHHHHHHH--HHHHhcCCCCeEEEcCCCChhHHHHHH----HCCCEEEEecC-CC--
Q 025730 139 AKDS-GLE-----SDHILV--GCGADELIDL--IMRCVLDPGDKIVDCPPTFTMYEFDAA----VNGAAVVKVPR-KS-- 201 (249)
Q Consensus 139 a~~~-~~~-----~~~I~v--t~Ga~~~l~~--~~~~~~~pGd~Vlv~~P~y~~~~~~~~----~~G~~v~~v~~-~~-- 201 (249)
++++ |.+ +++|++ |+|+++++.+ .+..++.+||+|++++|+|..|...++ ..|++++.++. +.
T Consensus 104 a~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ 183 (448)
T 3meb_A 104 QFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDG 183 (448)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTS
T ss_pred HHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEecccccc
Confidence 9998 876 689999 9999999988 456678899999999999999999999 89999999996 54
Q ss_pred CCCCCHHHHHHhhcc--CCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 202 DFSLNVELIADAVER--EKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 202 ~~~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++.+|++++++++++ .+++++++++||||||.+++.+++ +.++|++||
T Consensus 184 ~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~ 235 (448)
T 3meb_A 184 ELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKK 235 (448)
T ss_dssp CSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCC
Confidence 489999999999974 357888899999999999887755 778888875
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-21 Score=174.56 Aligned_cols=154 Identities=20% Similarity=0.346 Sum_probs=128.0
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHhcc-------------CCCCCCCc-ChHHHHHHHHHHcC--------CCCCCEEEe
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQLK-------------FPYIYPDP-ESRRLRAALAKDSG--------LESDHILVG 152 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~~~-------------~~~~Yp~~-g~~~lr~~la~~~~--------~~~~~I~vt 152 (249)
..+|+|+.|+|++++ +.+.+++.... ...+|+++ |..+||++++++++ +++++|++|
T Consensus 36 ~~~i~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~ 114 (428)
T 1iay_A 36 NGVIQMGLAENQLCL-DLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMA 114 (428)
T ss_dssp TSBEECSSCCCCSSH-HHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEE
T ss_pred CceeeeccccchhhH-HHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEc
Confidence 467999999999975 47777776421 12578765 68999999999986 778999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH-HHCCCEEEEecCC--CCCCCCHHHHHHhhcc-----CCceEEEE
Q 025730 153 CGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA-AVNGAAVVKVPRK--SDFSLNVELIADAVER-----EKPKCIFL 224 (249)
Q Consensus 153 ~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~-~~~G~~v~~v~~~--~~~~id~e~l~~~i~~-----~~~k~i~l 224 (249)
+|+++++.+++++++++||+|+++.|+|..|...+ ...|++++.++.+ ++|.+|++++++++++ .++++|++
T Consensus 115 ~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 194 (428)
T 1iay_A 115 GGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLIL 194 (428)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEE
Confidence 99999999999999999999999999999887644 4689999999965 4578999999999863 36899999
Q ss_pred cCCCCccccCCChHHH--HHHHhhhhC
Q 025730 225 TSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 225 ~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++||||||.+++.+++ +..+|++||
T Consensus 195 ~~p~nptG~~~~~~~l~~l~~~~~~~~ 221 (428)
T 1iay_A 195 TNPSNPLGTTLDKDTLKSVLSFTNQHN 221 (428)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHCC
Confidence 9999999999876543 667888775
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=170.78 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=128.1
Q ss_pred CCeeeccCCCC-----CCCCCHHHHHHHHhcc--CCCCCC-CcChHHHHHHHHHHc-CC-CCC---CEEEeCCHHHHHHH
Q 025730 95 EDIVKIDANEN-----PYGPPPEVREALGQLK--FPYIYP-DPESRRLRAALAKDS-GL-ESD---HILVGCGADELIDL 161 (249)
Q Consensus 95 ~~~I~L~~~~~-----~~~~p~~v~~al~~~~--~~~~Yp-~~g~~~lr~~la~~~-~~-~~~---~I~vt~Ga~~~l~~ 161 (249)
.++|+|+.|++ ++++++.+.+++.... ....|+ ..|..+||+++++++ +. .++ +|++|+|+++++.+
T Consensus 38 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~ 117 (418)
T 3rq1_A 38 ENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHH 117 (418)
T ss_dssp GGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHH
T ss_pred CCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHH
Confidence 47899999976 8889999999987742 225674 468999999999987 22 356 99999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC-CCCCCCCHHHHHHhhccC---Cce-EEEEcCC-CCccccCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR-KSDFSLNVELIADAVERE---KPK-CIFLTSP-NNPDGRFS 235 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~-~~~~~id~e~l~~~i~~~---~~k-~i~l~~P-nNPTG~~~ 235 (249)
++++++++||+|++++|+|..|...++..|++++.++. ++++.+|++++++++++. +++ ++++++| |||||.++
T Consensus 118 ~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~ 197 (418)
T 3rq1_A 118 LIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSI 197 (418)
T ss_dssp HHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCC
T ss_pred HHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCC
Confidence 99999999999999999999999999999999999996 355799999999999741 566 8889999 99999998
Q ss_pred ChHHH--HHHHhh
Q 025730 236 WTSSW--IWGISS 246 (249)
Q Consensus 236 ~~~e~--i~~i~~ 246 (249)
+.+++ +.++|+
T Consensus 198 ~~~~l~~l~~~~~ 210 (418)
T 3rq1_A 198 EDKDWDSILNFLK 210 (418)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 87764 455665
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=169.36 Aligned_cols=154 Identities=16% Similarity=0.236 Sum_probs=128.9
Q ss_pred CCeeeccCCCC-CCCCCHHHHHHHHh-ccC--CCCC-CCcChHHHHHHHHHHc----CCC--C-CCEEEeCCHHHHHHHH
Q 025730 95 EDIVKIDANEN-PYGPPPEVREALGQ-LKF--PYIY-PDPESRRLRAALAKDS----GLE--S-DHILVGCGADELIDLI 162 (249)
Q Consensus 95 ~~~I~L~~~~~-~~~~p~~v~~al~~-~~~--~~~Y-p~~g~~~lr~~la~~~----~~~--~-~~I~vt~Ga~~~l~~~ 162 (249)
..+|+|+.|.+ ++++++.+++++.+ +.. ...| +..+..++++++++++ |++ + ++|++|+|+++++.++
T Consensus 39 ~~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~ 118 (407)
T 3nra_A 39 GRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLA 118 (407)
T ss_dssp SCCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred CceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHH
Confidence 35899999754 48888999988876 332 1357 4457778888777764 653 4 7999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC------CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR------KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~------~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
+.+++++||+|+++.|+|..+...++..|++++.++. ++++.+|+++++++++ .++++|++++||||||.+++
T Consensus 119 ~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~p~nptG~~~~ 197 (407)
T 3nra_A 119 VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVFLFSNPNNPAGVVYS 197 (407)
T ss_dssp HHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH-TTCCEEEEESSCTTTCCCCC
T ss_pred HHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh-hCCcEEEEcCCCCCCCcccC
Confidence 9999999999999999999999999999999999996 4778999999999998 58999999999999999988
Q ss_pred hHH--HHHHHhhhhC
Q 025730 237 TSS--WIWGISSEHN 249 (249)
Q Consensus 237 ~~e--~i~~i~~~~~ 249 (249)
.++ .+.++|++||
T Consensus 198 ~~~l~~i~~~~~~~~ 212 (407)
T 3nra_A 198 AEEIGQIAALAARYG 212 (407)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 664 4677888875
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=178.22 Aligned_cols=153 Identities=15% Similarity=0.119 Sum_probs=127.6
Q ss_pred CeeeccCCCCC---CCCCHHHHHHHHh-c---c--CCCCCCCc-ChHHHHHHHHHHcCCCCCCEEEeCCHHHHH--HHHH
Q 025730 96 DIVKIDANENP---YGPPPEVREALGQ-L---K--FPYIYPDP-ESRRLRAALAKDSGLESDHILVGCGADELI--DLIM 163 (249)
Q Consensus 96 ~~I~L~~~~~~---~~~p~~v~~al~~-~---~--~~~~Yp~~-g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l--~~~~ 163 (249)
.+|+|+.|+++ +++++.+.+++.+ + . ...+|++. |..+||+++++++++++++|++|+|+++++ .+++
T Consensus 33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~ 112 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLIS 112 (422)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHH
T ss_pred CeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHH
Confidence 37999999998 8888788887754 2 1 23579654 699999999999999999999999999997 6777
Q ss_pred HHhcCC------------CCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEE-EcCCCCc
Q 025730 164 RCVLDP------------GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIF-LTSPNNP 230 (249)
Q Consensus 164 ~~~~~p------------Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~-l~~PnNP 230 (249)
+.+..+ ||+|++++|+|..|...++..|++++.++.+++ ++|++++++++++.++++|+ +++||||
T Consensus 113 ~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-g~d~~~l~~~l~~~~~~~v~~~~~~~NP 191 (422)
T 3d6k_A 113 WSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE-GPDMGVVRELVKDPQVKGMWTVPVFGNP 191 (422)
T ss_dssp HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT-EECHHHHHHHHTSTTEEEEEECCSSCTT
T ss_pred HHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC-CCCHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 877766 357999999999999999999999999997554 59999999999744789988 6899999
Q ss_pred cccCCChHH--HHHHHhh-hhC
Q 025730 231 DGRFSWTSS--WIWGISS-EHN 249 (249)
Q Consensus 231 TG~~~~~~e--~i~~i~~-~~~ 249 (249)
||.+++.++ .+.++|+ +||
T Consensus 192 tG~~~~~~~l~~l~~~~~~~~~ 213 (422)
T 3d6k_A 192 TGVTFSEQTCRELAEMSTAAPD 213 (422)
T ss_dssp TCCCCCHHHHHHHHHCCCSSTT
T ss_pred CCCCCCHHHHHHHHHHHhhccC
Confidence 999988773 4667777 664
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=173.66 Aligned_cols=154 Identities=22% Similarity=0.396 Sum_probs=129.5
Q ss_pred CCeeeccCCCCCCC--CCHHHHHHHHh-ccC----CCCCCC-cChHHHHHHHHHHc----CC-CCCCEEEeCCHHHHHHH
Q 025730 95 EDIVKIDANENPYG--PPPEVREALGQ-LKF----PYIYPD-PESRRLRAALAKDS----GL-ESDHILVGCGADELIDL 161 (249)
Q Consensus 95 ~~~I~L~~~~~~~~--~p~~v~~al~~-~~~----~~~Yp~-~g~~~lr~~la~~~----~~-~~~~I~vt~Ga~~~l~~ 161 (249)
+++|+|+.|.+... +++.+.+++.+ +.. ..+|+. .|..+||+++++++ |+ ++++|++|+|+++++++
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~ 155 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDL 155 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHH
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHH
Confidence 46899999987543 66778877765 321 246854 58999999999999 88 78899999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhc----c-CCceEEE-EcCCCCccccCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVE----R-EKPKCIF-LTSPNNPDGRFS 235 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~----~-~~~k~i~-l~~PnNPTG~~~ 235 (249)
++++++++||+|+++.|+|..|...++..|++++.++.+++ ++|+++|+++++ + .++++|+ +++||||||.++
T Consensus 156 ~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~ 234 (448)
T 3aow_A 156 IGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE-GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTM 234 (448)
T ss_dssp HHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCC
T ss_pred HHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC-CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCC
Confidence 99999999999999999999999999999999999997554 599999999986 3 3789985 679999999998
Q ss_pred ChH--HHHHHHhhhhC
Q 025730 236 WTS--SWIWGISSEHN 249 (249)
Q Consensus 236 ~~~--e~i~~i~~~~~ 249 (249)
+.+ +.+.++|++||
T Consensus 235 ~~~~l~~i~~la~~~~ 250 (448)
T 3aow_A 235 NEDRRKYLLELASEYD 250 (448)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 876 45778898875
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=167.68 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=128.2
Q ss_pred CCCCeeeccCCCC-CCCCCHHHHHHHHhc-c-CCCCC-CCcChHHHHHHHHHHc-CCC-----CCCEE--EeCCHHHHHH
Q 025730 93 KPEDIVKIDANEN-PYGPPPEVREALGQL-K-FPYIY-PDPESRRLRAALAKDS-GLE-----SDHIL--VGCGADELID 160 (249)
Q Consensus 93 ~~~~~I~L~~~~~-~~~~p~~v~~al~~~-~-~~~~Y-p~~g~~~lr~~la~~~-~~~-----~~~I~--vt~Ga~~~l~ 160 (249)
..+++|+|+.|++ ++..++.+.+++.+. . ....| +..|..+||+++++++ +.. +++|. .+.|+++++.
T Consensus 39 ~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~ 118 (409)
T 4eu1_A 39 PAKRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALR 118 (409)
T ss_dssp CCSSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHH
T ss_pred CCcCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHH
Confidence 3467899999997 887777777887763 2 23677 5578899999999987 655 67884 5899999888
Q ss_pred HH---HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhcc--CCceEEEEcCCCCcccc
Q 025730 161 LI---MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVER--EKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 161 ~~---~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~ 233 (249)
++ ++.++++||+|++++|+|..|...++..|++++.++. ++++.+|++++++++++ .+++++++++||||||.
T Consensus 119 ~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~ 198 (409)
T 4eu1_A 119 IGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGV 198 (409)
T ss_dssp HHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCC
Confidence 75 4456789999999999999999999999999999996 45688999999999963 35667777999999999
Q ss_pred CCChHHH--HHHHhhhhC
Q 025730 234 FSWTSSW--IWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~--i~~i~~~~~ 249 (249)
+++.+++ +.++|++||
T Consensus 199 ~~~~~~l~~i~~~~~~~~ 216 (409)
T 4eu1_A 199 DPTHDDWRQVCDVIKRRN 216 (409)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 9987754 777888875
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-20 Score=165.40 Aligned_cols=155 Identities=10% Similarity=0.075 Sum_probs=127.3
Q ss_pred CCeeeccCCC---CC--CCCCHHHHHHHHh-cc--CCCCC-CCcChHHHHHHHHHHc---C---CCCCCEEE--eCCHHH
Q 025730 95 EDIVKIDANE---NP--YGPPPEVREALGQ-LK--FPYIY-PDPESRRLRAALAKDS---G---LESDHILV--GCGADE 157 (249)
Q Consensus 95 ~~~I~L~~~~---~~--~~~p~~v~~al~~-~~--~~~~Y-p~~g~~~lr~~la~~~---~---~~~~~I~v--t~Ga~~ 157 (249)
+++|+|+.|+ +. .++++.+.+++.+ +. ..+.| +..+..+||+++++++ + +++++|++ |+|+++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~ 105 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTG 105 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchh
Confidence 4679999998 32 2566888888875 22 33578 6678999999999998 2 35789998 999999
Q ss_pred HHHHHHHHh--cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccC--CceEEEEcCCCCcc
Q 025730 158 LIDLIMRCV--LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVERE--KPKCIFLTSPNNPD 231 (249)
Q Consensus 158 ~l~~~~~~~--~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~--~~k~i~l~~PnNPT 231 (249)
+++++++.+ +.+||+|+++.|+|..|...++..|++++.++.+ +++.+|++++++++++. +++++++++|||||
T Consensus 106 a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~npt 185 (396)
T 2q7w_A 106 ALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPT 185 (396)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTT
T ss_pred hHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCC
Confidence 999998765 4699999999999999999999999999999974 57889999999999742 47788889999999
Q ss_pred ccCCChHH--HHHHHhhhhC
Q 025730 232 GRFSWTSS--WIWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~e--~i~~i~~~~~ 249 (249)
|.+++.++ .+.++|++||
T Consensus 186 G~~~~~~~l~~l~~~~~~~~ 205 (396)
T 2q7w_A 186 GIDPTLEQWQTLAQLSVEKG 205 (396)
T ss_dssp CCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 99988764 4777888875
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=169.04 Aligned_cols=155 Identities=19% Similarity=0.288 Sum_probs=131.3
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCCCcChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYPDPESRRLRAALAKDS----G--LESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp~~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
++++|+|+.+++++++++.+.+++.+ +. ..+.|+.. ..++++++++++ + +++++|++|+|+++++..+++.
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~-~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~ 138 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYF-NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQA 138 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCC-CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCC-CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHH
Confidence 46789999999999999999999876 33 23567543 266777777664 5 6788999999999999999999
Q ss_pred hcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC---CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH--H
Q 025730 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK---SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS--W 240 (249)
Q Consensus 166 ~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~---~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e--~ 240 (249)
++++||+|+++.|+|..+...++..|.+++.+|.+ .++.+|+++|++++++.++++|++++|+||||.+++.++ .
T Consensus 139 ~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~ 218 (421)
T 3l8a_A 139 FSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIK 218 (421)
T ss_dssp HSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred hcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHH
Confidence 99999999999999999999999999999999863 345689999999997568999999999999999987764 4
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.++|++||
T Consensus 219 l~~l~~~~~ 227 (421)
T 3l8a_A 219 IAELCKKHG 227 (421)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 778899875
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=170.14 Aligned_cols=150 Identities=17% Similarity=0.274 Sum_probs=125.8
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-cc------CCCCCC-CcChHHHHHHHHHHc----CCCCCCEEEeCCHHHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LK------FPYIYP-DPESRRLRAALAKDS----GLESDHILVGCGADELID 160 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~------~~~~Yp-~~g~~~lr~~la~~~----~~~~~~I~vt~Ga~~~l~ 160 (249)
++.++|+|+.|++++++++.+.+++.+ +. ....|+ ..+..+||+++++++ ++++++|++|+|+++++.
T Consensus 67 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~ 146 (449)
T 3qgu_A 67 PDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIA 146 (449)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHH
T ss_pred CCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHH
Confidence 356789999999999999999988865 32 235784 468899999999998 788899999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCE----------EEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCCC
Q 025730 161 LIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAA----------VVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPN 228 (249)
Q Consensus 161 ~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~----------v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~Pn 228 (249)
++ ..++++||+|++++|+|..|...++..|++ ++.++.+. ++..|++++ .++++|++++||
T Consensus 147 ~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~l~~p~ 219 (449)
T 3qgu_A 147 RI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------KRTDIIFFCSPN 219 (449)
T ss_dssp HH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC------CCCSEEEEESSC
T ss_pred HH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc------CCCCEEEEeCCC
Confidence 99 888999999999999999999999999998 99998654 344454321 578999999999
Q ss_pred CccccCCChHHH--HHHHhhhhC
Q 025730 229 NPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 229 NPTG~~~~~~e~--i~~i~~~~~ 249 (249)
||||.+++.+++ +.++|++||
T Consensus 220 NPtG~~~~~~~l~~l~~l~~~~~ 242 (449)
T 3qgu_A 220 NPTGAAATRAQLTELVNFARKNG 242 (449)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHHHHHCC
Confidence 999999887644 677888875
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-20 Score=164.87 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=129.0
Q ss_pred CCCeeeccCCCC---C--CCCCHHHHHHHHhc-c--CCCCCC-CcChHHHHHHHHHHc-CC--CCCCEEE--eCCHHHHH
Q 025730 94 PEDIVKIDANEN---P--YGPPPEVREALGQL-K--FPYIYP-DPESRRLRAALAKDS-GL--ESDHILV--GCGADELI 159 (249)
Q Consensus 94 ~~~~I~L~~~~~---~--~~~p~~v~~al~~~-~--~~~~Yp-~~g~~~lr~~la~~~-~~--~~~~I~v--t~Ga~~~l 159 (249)
.+++|+|+.|++ . .++++.+.+++.+. . ....|+ ..+..+||+++++++ +. ++++|++ |+|+++++
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~ 104 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGAL 104 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHH
Confidence 456899999984 2 35678898888762 2 346785 467899999999997 55 7889999 99999999
Q ss_pred HHHHHHhcC--CCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccC--CceEEEEcCCCCcccc
Q 025730 160 DLIMRCVLD--PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVERE--KPKCIFLTSPNNPDGR 233 (249)
Q Consensus 160 ~~~~~~~~~--pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~--~~k~i~l~~PnNPTG~ 233 (249)
.++++.+.. +||+|+++.|+|..|...++..|++++.++.+ +++.+|++++++++++. +++++++++||||||.
T Consensus 105 ~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~ 184 (394)
T 2ay1_A 105 RQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGA 184 (394)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCC
T ss_pred HHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCC
Confidence 999987754 99999999999999999999999999999974 56889999999999743 3677778999999999
Q ss_pred CCChHH--HHHHHhhhhC
Q 025730 234 FSWTSS--WIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e--~i~~i~~~~~ 249 (249)
+++.++ .+.++|++||
T Consensus 185 ~~~~~~l~~i~~~~~~~~ 202 (394)
T 2ay1_A 185 NLTLDQWAEIASILEKTG 202 (394)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 988764 4777888875
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=169.40 Aligned_cols=154 Identities=20% Similarity=0.358 Sum_probs=128.6
Q ss_pred CCeeeccCCCCCC--CCCHHHHHHHHh-ccC----CCCCCC-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 95 EDIVKIDANENPY--GPPPEVREALGQ-LKF----PYIYPD-PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 95 ~~~I~L~~~~~~~--~~p~~v~~al~~-~~~----~~~Yp~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
+++|+|+.+.+.. .+++.+.+++.+ +.. ...|+. .+..+||+++++++|+++++|++|+|+++++.+++.++
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~ 111 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVF 111 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHh
Confidence 4679999887543 256778887765 221 257754 47899999999999988899999999999999999999
Q ss_pred cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEE-EcCCCCccccCCChHH--HHHH
Q 025730 167 LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIF-LTSPNNPDGRFSWTSS--WIWG 243 (249)
Q Consensus 167 ~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~-l~~PnNPTG~~~~~~e--~i~~ 243 (249)
+++||+|+++.|+|..+...++..|++++.++.+++ ++|++++++++++.++++|+ +++||||||.+++.++ .+.+
T Consensus 112 ~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~ 190 (397)
T 2zyj_A 112 LDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE-GPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQ 190 (397)
T ss_dssp CCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-EECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC-CCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHH
Confidence 999999999999999999999999999999996544 49999999999744789885 6899999999987663 4777
Q ss_pred HhhhhC
Q 025730 244 ISSEHN 249 (249)
Q Consensus 244 i~~~~~ 249 (249)
+|++||
T Consensus 191 ~~~~~~ 196 (397)
T 2zyj_A 191 MVMERG 196 (397)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 888875
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=168.07 Aligned_cols=153 Identities=22% Similarity=0.368 Sum_probs=126.9
Q ss_pred CCeeeccCCCCCCC--CCHHHHHHHHh-cc----CCCCCCC-cChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHH
Q 025730 95 EDIVKIDANENPYG--PPPEVREALGQ-LK----FPYIYPD-PESRRLRAALAKDS----G--LESDHILVGCGADELID 160 (249)
Q Consensus 95 ~~~I~L~~~~~~~~--~p~~v~~al~~-~~----~~~~Yp~-~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~ 160 (249)
.++|+|+.+.++.. +++.+.+++.+ +. ... |+. .+..++|+++++++ | +++++|++|+|+++++.
T Consensus 34 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~ 112 (407)
T 2zc0_A 34 VKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALD 112 (407)
T ss_dssp CCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHH
T ss_pred CceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHH
Confidence 36799999876543 56778887764 22 124 854 47899999999998 7 56789999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhc----c-CCceEEE-EcCCCCccccC
Q 025730 161 LIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVE----R-EKPKCIF-LTSPNNPDGRF 234 (249)
Q Consensus 161 ~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~----~-~~~k~i~-l~~PnNPTG~~ 234 (249)
+++.+++++||+|+++.|+|..+...++..|++++.++.+.+ ++|+++++++++ + .++++|+ +++||||||.+
T Consensus 113 ~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~ 191 (407)
T 2zc0_A 113 LLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDND-GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVT 191 (407)
T ss_dssp HHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC
T ss_pred HHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC-CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcC
Confidence 999999999999999999999999999999999999996544 499999999987 4 3788875 67999999999
Q ss_pred CChH--HHHHHHhhhhC
Q 025730 235 SWTS--SWIWGISSEHN 249 (249)
Q Consensus 235 ~~~~--e~i~~i~~~~~ 249 (249)
++.+ +.+.++|++||
T Consensus 192 ~~~~~l~~i~~~~~~~~ 208 (407)
T 2zc0_A 192 MSMERRKALLEIASKYD 208 (407)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 8776 35778888875
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=172.00 Aligned_cols=126 Identities=21% Similarity=0.342 Sum_probs=111.0
Q ss_pred CCCC-CcChHHHHHHHHHHcC------CCCCCEEEeCCHHHHHHHHHHHhc-CCCCeEEEcCCCChhHHHHHHHCCCEEE
Q 025730 124 YIYP-DPESRRLRAALAKDSG------LESDHILVGCGADELIDLIMRCVL-DPGDKIVDCPPTFTMYEFDAAVNGAAVV 195 (249)
Q Consensus 124 ~~Yp-~~g~~~lr~~la~~~~------~~~~~I~vt~Ga~~~l~~~~~~~~-~pGd~Vlv~~P~y~~~~~~~~~~G~~v~ 195 (249)
..|+ ..|..+||++++++++ +++++|++|+|+++++.+++.+++ ++||+|+++.|+|..|...++..|++++
T Consensus 128 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 207 (500)
T 3tcm_A 128 GAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALV 207 (500)
T ss_dssp SSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHTTCEEE
T ss_pred CCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHcCCEEE
Confidence 5785 4689999999999973 678999999999999999999998 8999999999999999999999999999
Q ss_pred EecCCC--CCCCCHHHHHHhhccC-----CceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 196 KVPRKS--DFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 196 ~v~~~~--~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
.++.++ +|.+|+++|++++++. ++|+|+++|||||||.+++.+++ +.++|++||
T Consensus 208 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~ 270 (500)
T 3tcm_A 208 PYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEG 270 (500)
T ss_dssp EEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred EEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcC
Confidence 999643 4799999999999742 78999999999999999988755 666788875
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=169.46 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=128.5
Q ss_pred CCeeeccCCCCCCC--CCHHHHHHHHh-ccC----CCCCCC-cChHHHHHHHHHHc----C---CCCCCEEEeCCHHHHH
Q 025730 95 EDIVKIDANENPYG--PPPEVREALGQ-LKF----PYIYPD-PESRRLRAALAKDS----G---LESDHILVGCGADELI 159 (249)
Q Consensus 95 ~~~I~L~~~~~~~~--~p~~v~~al~~-~~~----~~~Yp~-~g~~~lr~~la~~~----~---~~~~~I~vt~Ga~~~l 159 (249)
+++|+|+.|.++.. +++.+.+++.+ +.. ...|+. .+..+||+++++++ | +++++|++|+|+++++
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al 122 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQAL 122 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHH
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHH
Confidence 46899999876543 66788888765 321 257854 47899999999999 8 6678999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-------CCceEEE-EcCCCCcc
Q 025730 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-------EKPKCIF-LTSPNNPD 231 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-------~~~k~i~-l~~PnNPT 231 (249)
.+++++++++||+|+++.|+|..|...++..|++++.++.+++ ++|++++++++++ .++++|+ +++|||||
T Consensus 123 ~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~npt 201 (425)
T 1vp4_A 123 DLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPA 201 (425)
T ss_dssp HHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTT
T ss_pred HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC-CCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCC
Confidence 9999999999999999999999999999999999999996544 4999999999874 2789985 78999999
Q ss_pred ccCCChHH--HHHHHhhhhC
Q 025730 232 GRFSWTSS--WIWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~e--~i~~i~~~~~ 249 (249)
|.+++.++ .+.++|++||
T Consensus 202 G~~~~~~~l~~l~~~~~~~~ 221 (425)
T 1vp4_A 202 GVTTSLEKRKALVEIAEKYD 221 (425)
T ss_dssp CCCCCHHHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHHcC
Confidence 99988764 4778888875
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.7e-20 Score=161.57 Aligned_cols=152 Identities=20% Similarity=0.150 Sum_probs=128.1
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCC----------CC-CCCcChHHHHHH-HHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFP----------YI-YPDPESRRLRAA-LAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~----------~~-Yp~~g~~~lr~~-la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
+++++|+.+.+..++++.+.+++.+ +... .. ++..+..+++++ ++++++.+ +|++|+|+++++.+
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~ 84 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFA 84 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHHH
Confidence 4678999977777788999999886 3221 11 255678999999 99999986 99999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEec--CCCCCCCCHHHHHHhhcc----CCceEEEEcCCCCccccCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVER----EKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~--~~~~~~id~e~l~~~i~~----~~~k~i~l~~PnNPTG~~~ 235 (249)
++.+++++||+|++++|+|..+...++..|++++.++ .++++.+|++++++++++ .++++|++++|+||||.++
T Consensus 85 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~ 164 (371)
T 2e7j_A 85 VMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLP 164 (371)
T ss_dssp HHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCC
T ss_pred HHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccC
Confidence 9999999999999999999998888999999999999 777789999999999973 4789999999999999997
Q ss_pred ChHHHHHHHhhhhC
Q 025730 236 WTSSWIWGISSEHN 249 (249)
Q Consensus 236 ~~~e~i~~i~~~~~ 249 (249)
+ .+.+.++|++||
T Consensus 165 ~-~~~i~~~~~~~~ 177 (371)
T 2e7j_A 165 D-VKKIAKVCSEYD 177 (371)
T ss_dssp C-HHHHHHHHHTTT
T ss_pred C-HHHHHHHHHHcC
Confidence 5 477788898875
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-20 Score=166.56 Aligned_cols=177 Identities=16% Similarity=0.255 Sum_probs=134.3
Q ss_pred hHHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHH--H-------------HHHHHhccCCCCCC-C
Q 025730 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPE--V-------------REALGQLKFPYIYP-D 128 (249)
Q Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~--v-------------~~al~~~~~~~~Yp-~ 128 (249)
.+++.++..+.++ ++..+...+... .+++|+|+.|.++...++. . .++... ...|+ .
T Consensus 5 ~~~s~~~~~~~~~-~~~~~~~~~~~~---~~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~ 77 (425)
T 2r2n_A 5 RFITAASAARNPS-PIRTMTDILSRG---PKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMKR---ALQYSPS 77 (425)
T ss_dssp GGSCHHHHTCCCC-SGGGHHHHHHHS---CTTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHHHH---HTSCCCT
T ss_pred HHHHHHHhcCCCc-hHHHHHHHhhcC---CCCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccchhh---hcCCCCC
Confidence 4556677766665 334444444432 2568999999987654431 0 011111 14674 4
Q ss_pred cChHHHHHHHHHHc----CCCC---------CCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEE
Q 025730 129 PESRRLRAALAKDS----GLES---------DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVV 195 (249)
Q Consensus 129 ~g~~~lr~~la~~~----~~~~---------~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~ 195 (249)
.|..+||+++++++ |++. ++|++|+|+++++.+++++++++||+|++++|+|..|...++..|++++
T Consensus 78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 157 (425)
T 2r2n_A 78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNII 157 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEE
Confidence 68899999999986 6643 6899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCHHHHHHhhcc-----------CCceEEEE-cCCCCccccCCChHH--HHHHHhhhhC
Q 025730 196 KVPRKSDFSLNVELIADAVER-----------EKPKCIFL-TSPNNPDGRFSWTSS--WIWGISSEHN 249 (249)
Q Consensus 196 ~v~~~~~~~id~e~l~~~i~~-----------~~~k~i~l-~~PnNPTG~~~~~~e--~i~~i~~~~~ 249 (249)
.++.++ .++|++++++++++ .++++|++ ++||||||.+++.++ .+.++|++||
T Consensus 158 ~v~~~~-~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~ 224 (425)
T 2r2n_A 158 NVASDE-SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYD 224 (425)
T ss_dssp EECEET-TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred EeCcCC-CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcC
Confidence 999754 36999999999862 35888876 589999999988763 4677888875
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=160.04 Aligned_cols=147 Identities=21% Similarity=0.207 Sum_probs=124.0
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC------------cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 98 VKIDANENPYGPPPEVREALGQ-LKFPYIYPD------------PESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~------------~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
+.|+.+.+. ++++.+.+++.+ +.. .|++ .+..++++++++++|+++++|++|+|+++++.+++.
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~ 79 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYRE--KYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILK 79 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHT--CCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHh--cCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHH
Confidence 678888776 678889888876 332 2211 235789999999999988999999999999999999
Q ss_pred Hhc----CCCCeEEEcCCCChhHHHHH---HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 165 CVL----DPGDKIVDCPPTFTMYEFDA---AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 165 ~~~----~pGd~Vlv~~P~y~~~~~~~---~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
++. ++||+|++++|+|..+...+ +..|++++.++.+.++.+|+++++++++ .++++|++++|+||||.+++
T Consensus 80 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~nptG~~~~- 157 (384)
T 1eg5_A 80 TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD-EDTFLVSIMAANNEVGTIQP- 157 (384)
T ss_dssp HHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC-TTEEEEEEESBCTTTCBBCC-
T ss_pred hhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhC-CCCeEEEEECCCCCcccccC-
Confidence 987 79999999999998776555 6789999999987778899999999998 68999999999999999976
Q ss_pred HHHHHHHhhhhC
Q 025730 238 SSWIWGISSEHN 249 (249)
Q Consensus 238 ~e~i~~i~~~~~ 249 (249)
.+.+..+|++||
T Consensus 158 ~~~i~~l~~~~~ 169 (384)
T 1eg5_A 158 VEDVTRIVKKKN 169 (384)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 567778888875
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=166.22 Aligned_cols=151 Identities=21% Similarity=0.192 Sum_probs=129.4
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC--------CCCCCC---cChHHHHHHHHHHcCC-CCCCEEEeCCHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF--------PYIYPD---PESRRLRAALAKDSGL-ESDHILVGCGADELIDLI 162 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~--------~~~Yp~---~g~~~lr~~la~~~~~-~~~~I~vt~Ga~~~l~~~ 162 (249)
++|+|+.+++. +.|+.+.+++.+ +.. .+.|+. .+..+++++++++++. ++++|++|+|+++++.++
T Consensus 28 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~ 106 (420)
T 1t3i_A 28 PLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLV 106 (420)
T ss_dssp ECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHH
T ss_pred ceEEecCCccC-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHH
Confidence 47999999998 678888888865 221 123542 4578899999999998 778999999999999999
Q ss_pred HHHh----cCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 163 MRCV----LDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 163 ~~~~----~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
+.++ +++||+|+++.|+|.. |...++..|++++.++.++++.+|+++++++++ .++++|++++|+||||.+
T Consensus 107 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~ 185 (420)
T 1t3i_A 107 AYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS-EKTKLVTVVHISNTLGCV 185 (420)
T ss_dssp HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC-TTEEEEEEESBCTTTCBB
T ss_pred HHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhC-CCceEEEEeCCcccccCc
Confidence 9999 8999999999999986 667777889999999987788899999999998 689999999999999999
Q ss_pred CChHHHHHHHhhhhC
Q 025730 235 SWTSSWIWGISSEHN 249 (249)
Q Consensus 235 ~~~~e~i~~i~~~~~ 249 (249)
++ .+.+.++|++||
T Consensus 186 ~~-l~~i~~l~~~~~ 199 (420)
T 1t3i_A 186 NP-AEEIAQLAHQAG 199 (420)
T ss_dssp CC-HHHHHHHHHHTT
T ss_pred CC-HHHHHHHHHHcC
Confidence 76 677788898875
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=161.67 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=129.5
Q ss_pred CCCeeeccCCCC--C---CCCCHHHHHHHHhcc----CCCCC-CCcChHHHHHHHHHHc-CC-----CCCCEEE--eCCH
Q 025730 94 PEDIVKIDANEN--P---YGPPPEVREALGQLK----FPYIY-PDPESRRLRAALAKDS-GL-----ESDHILV--GCGA 155 (249)
Q Consensus 94 ~~~~I~L~~~~~--~---~~~p~~v~~al~~~~----~~~~Y-p~~g~~~lr~~la~~~-~~-----~~~~I~v--t~Ga 155 (249)
..++|+|+.|.+ + ..+++.+.+++.+.. ..++| +..+..+||+++++++ +. ++++|++ |+|+
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg 108 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGG 108 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCc
Confidence 467899999984 2 346688888887631 33578 6678999999999999 54 6789999 9999
Q ss_pred HHHHHHHHH--HhcCCC-----CeEEEcCCCChhHHHHHHHCCCE-EEEecCC--CCCCCCHHHHHHhhcc--CCceEEE
Q 025730 156 DELIDLIMR--CVLDPG-----DKIVDCPPTFTMYEFDAAVNGAA-VVKVPRK--SDFSLNVELIADAVER--EKPKCIF 223 (249)
Q Consensus 156 ~~~l~~~~~--~~~~pG-----d~Vlv~~P~y~~~~~~~~~~G~~-v~~v~~~--~~~~id~e~l~~~i~~--~~~k~i~ 223 (249)
++++.++++ .++++| |+|+++.|+|..|...++..|++ ++.++.. +++.+|++++++++++ .++++|+
T Consensus 109 ~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~ 188 (412)
T 1ajs_A 109 TGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVL 188 (412)
T ss_dssp HHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEE
Confidence 999999964 456899 99999999999999999999999 9999863 6688999999999874 2677888
Q ss_pred EcCCCCccccCCChHH--HHHHHhhhhC
Q 025730 224 LTSPNNPDGRFSWTSS--WIWGISSEHN 249 (249)
Q Consensus 224 l~~PnNPTG~~~~~~e--~i~~i~~~~~ 249 (249)
+++||||||.+++.++ .+.++|++||
T Consensus 189 ~~~p~nptG~~~~~~~l~~l~~~~~~~~ 216 (412)
T 1ajs_A 189 HACAHNPTGTDPTPEQWKQIASVMKRRF 216 (412)
T ss_dssp ESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999988764 4778888875
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=171.36 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=128.7
Q ss_pred CeeeccCCCCC---CCCCHHHHHHHH--h-ccC---CCCC-CC-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHH--HH
Q 025730 96 DIVKIDANENP---YGPPPEVREALG--Q-LKF---PYIY-PD-PESRRLRAALAKDSGLESDHILVGCGADELID--LI 162 (249)
Q Consensus 96 ~~I~L~~~~~~---~~~p~~v~~al~--~-~~~---~~~Y-p~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~--~~ 162 (249)
..|+|+.|.+. ++.++.+.+++. . +.. ...| +. .|..+||+++++++++++++|++|+|+++++. ++
T Consensus 26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred ceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence 45999999998 778878888874 3 222 2678 43 57899999999999999999999999999998 88
Q ss_pred HHHhcC--C---------CCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhc-cCCceEEEEc-CCCC
Q 025730 163 MRCVLD--P---------GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVE-REKPKCIFLT-SPNN 229 (249)
Q Consensus 163 ~~~~~~--p---------Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~-~~~~k~i~l~-~PnN 229 (249)
+++++. + ||+|++++|+|..|...++..|++++.++.+.+ ++|+++++++++ ..++++|++. +|||
T Consensus 106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-g~d~~~l~~~l~~~~~~~~v~~~~~~~N 184 (423)
T 3ez1_A 106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD-GPDVDAVERLAGTDPSVKGILFVPTYSN 184 (423)
T ss_dssp HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT-EECHHHHHHHHHSCTTEEEEEECSSSCT
T ss_pred HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC-CCCHHHHHHHHhhCCCceEEEECCCCCC
Confidence 888888 8 599999999999999999999999999997554 599999999995 3689999755 8999
Q ss_pred ccccCCChHHH--HHHHh-hhhC
Q 025730 230 PDGRFSWTSSW--IWGIS-SEHN 249 (249)
Q Consensus 230 PTG~~~~~~e~--i~~i~-~~~~ 249 (249)
|||.+++.+++ +.++| ++||
T Consensus 185 PtG~~~~~~~l~~l~~~a~~~~~ 207 (423)
T 3ez1_A 185 PGGETISLEKARRLAGLQAAAPD 207 (423)
T ss_dssp TTCCCCCHHHHHHHHTCCCSSTT
T ss_pred CCCcCCCHHHHHHHHHHHHhccC
Confidence 99999988743 55677 6664
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-20 Score=167.16 Aligned_cols=149 Identities=19% Similarity=0.299 Sum_probs=121.2
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-cc------CCCCCC-CcChHHHHHHHHHHc----CCCCCCEEEeCCHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LK------FPYIYP-DPESRRLRAALAKDS----GLESDHILVGCGADELIDL 161 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~------~~~~Yp-~~g~~~lr~~la~~~----~~~~~~I~vt~Ga~~~l~~ 161 (249)
++++|+|+.|++++++++.+.+++.+ +. ...+|+ ..+..+|++++++++ ++++++|++|+|+++++.+
T Consensus 55 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~ 134 (432)
T 3ei9_A 55 DAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR 134 (432)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH
Confidence 45789999999999999999998865 22 224674 467899999999997 7888999999999999998
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCC------------EEEEecCCC--CCCCCHHHHHHhhccCCceEEEEcCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGA------------AVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSP 227 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~------------~v~~v~~~~--~~~id~e~l~~~i~~~~~k~i~l~~P 227 (249)
+ ..++++||+|++++|+|..|...++..|. +++.++.+. ++..|+++ ..++++|++|+|
T Consensus 135 l-~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~v~l~~p 207 (432)
T 3ei9_A 135 L-QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST------VGRTDIIFFCSP 207 (432)
T ss_dssp H-HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG------CCCCSEEEEESS
T ss_pred H-HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh------CCCCCEEEEeCC
Confidence 5 67789999999999999999998888774 677777643 34445432 257899999999
Q ss_pred CCccccCCChHHH--HHHHhhhhC
Q 025730 228 NNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 228 nNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
|||||.+++.+++ +.++|++||
T Consensus 208 ~NPtG~~~~~~~l~~l~~la~~~~ 231 (432)
T 3ei9_A 208 NNPTGAAATREQLTQLVEFAKKNG 231 (432)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999887754 566788875
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-20 Score=161.32 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=122.3
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHhc-cCCCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCe
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQL-KFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK 172 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~~-~~~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~ 172 (249)
.++|+|+.+++++ +++.+.+++... .....| ++++..+|++++++++|. +++++++|+++++.+++.+++++||+
T Consensus 3 ~~~i~~~~~~~~~-p~~~~~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~~~~~~~~~gd~ 79 (347)
T 1jg8_A 3 HMMIDLRSDTVTK-PTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGK--EAALFVPSGTMGNQVSIMAHTQRGDE 79 (347)
T ss_dssp --CEECSCGGGCC-CCHHHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHCCTTCE
T ss_pred ceEEEeccccCCC-CCHHHHHHHhcCCCCCcccCCChHHHHHHHHHHHHhCC--ceEEEecCcHHHHHHHHHHhcCCCCE
Confidence 4579999999998 678899998763 222345 667788999999999996 46788888899999999999999999
Q ss_pred EEEcCCCChh-HH--HHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-----CCceEEEEcCCCCcc-ccCCChH--HHH
Q 025730 173 IVDCPPTFTM-YE--FDAAVNGAAVVKVPRKSDFSLNVELIADAVER-----EKPKCIFLTSPNNPD-GRFSWTS--SWI 241 (249)
Q Consensus 173 Vlv~~P~y~~-~~--~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-----~~~k~i~l~~PnNPT-G~~~~~~--e~i 241 (249)
|++++|+|.. |. ..+...|++++.+ .++++.+|++++++++++ .++++|++++||||| |.+++.+ +.+
T Consensus 80 Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i 158 (347)
T 1jg8_A 80 VILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEI 158 (347)
T ss_dssp EEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHH
T ss_pred EEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHH
Confidence 9999999964 43 2567789999999 555666899999999974 268999999999999 9998766 456
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|++||
T Consensus 159 ~~~a~~~~ 166 (347)
T 1jg8_A 159 CTIAKEHG 166 (347)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHCC
Confidence 78888875
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=174.64 Aligned_cols=126 Identities=21% Similarity=0.335 Sum_probs=107.6
Q ss_pred CCCC-CcChHHHHHHHHHHc-----CC--CCCCEEEeCCHHHHHHHHHHHhcCCCC----eEEEcCCCChhHHHHHHHCC
Q 025730 124 YIYP-DPESRRLRAALAKDS-----GL--ESDHILVGCGADELIDLIMRCVLDPGD----KIVDCPPTFTMYEFDAAVNG 191 (249)
Q Consensus 124 ~~Yp-~~g~~~lr~~la~~~-----~~--~~~~I~vt~Ga~~~l~~~~~~~~~pGd----~Vlv~~P~y~~~~~~~~~~G 191 (249)
..|+ ..|..+||+++++++ |+ ++++|++|+|+++++.+++++++++|| +|+++.|+|..|...++..|
T Consensus 123 ~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g 202 (498)
T 3ihj_A 123 GSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELD 202 (498)
T ss_dssp -----CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHHcC
Confidence 5685 458899999999987 44 688999999999999999999999875 99999999999999999999
Q ss_pred CEEEEecCC--CCCCCCHHHHHHhhccC----CceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 192 AAVVKVPRK--SDFSLNVELIADAVERE----KPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 192 ~~v~~v~~~--~~~~id~e~l~~~i~~~----~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++++.++.+ .+|++|+++|++++++. ++|+|+++|||||||.+++.+++ +.++|++||
T Consensus 203 ~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~ 268 (498)
T 3ihj_A 203 AIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEK 268 (498)
T ss_dssp CEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred CEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence 999999964 35799999999999742 58999999999999999988754 677888875
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-20 Score=165.99 Aligned_cols=152 Identities=24% Similarity=0.203 Sum_probs=112.9
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcC----------hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPE----------SRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g----------~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+.+.|+.+.+. ++|+.+.+++.+ +.....||... ..++|+++++++|+++++|++|+|+++++.+++
T Consensus 17 ~~~~~Ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~ 95 (432)
T 3a9z_A 17 NRKVYMDYNATT-PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVI 95 (432)
T ss_dssp -CCEECBTTTCC-CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHH
T ss_pred CCcEEeeCCccC-CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHH
Confidence 456899999887 678889988876 33234455432 268999999999998889999999999999999
Q ss_pred HHhc--------CCCCeEEEcCCCChhH-----------------HHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhccC
Q 025730 164 RCVL--------DPGDKIVDCPPTFTMY-----------------EFDAAVNGAAVVKVPRKS-DFSLNVELIADAVERE 217 (249)
Q Consensus 164 ~~~~--------~pGd~Vlv~~P~y~~~-----------------~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~~ 217 (249)
.+++ ++||+|+++.|+|..| ...++..|++++.++.+. ++.+|+++|+++++ .
T Consensus 96 ~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~-~ 174 (432)
T 3a9z_A 96 HSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR-P 174 (432)
T ss_dssp HHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC-T
T ss_pred HHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc-C
Confidence 9886 5899999999999765 344555799999999764 67799999999998 6
Q ss_pred CceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 218 KPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 218 ~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++++|++++||||||.+++. +.+.++|+++|
T Consensus 175 ~~~~v~~~~~~nptG~~~~~-~~i~~l~~~~~ 205 (432)
T 3a9z_A 175 TTCLVTIMLANNETGVIMPI-SEISRRIKALN 205 (432)
T ss_dssp TEEEEECCSBCTTTCBBCCH-HHHHHHHHHHH
T ss_pred CceEEEEECcccCcccccCH-HHHHHHHHhcC
Confidence 89999999999999999765 55777888764
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=165.67 Aligned_cols=155 Identities=17% Similarity=0.322 Sum_probs=130.1
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHhccC--C------------CCCCC-cChHHHHHHHHHHcC--------CCCCCEE
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQLKF--P------------YIYPD-PESRRLRAALAKDSG--------LESDHIL 150 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~~~~--~------------~~Yp~-~g~~~lr~~la~~~~--------~~~~~I~ 150 (249)
+..+|.|+.+++++. .+.+.+++.+... . .+|++ .|..+||++++++++ +++++|+
T Consensus 37 p~~~i~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~ 115 (435)
T 3piu_A 37 TNGIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLV 115 (435)
T ss_dssp TTSBEECSSCCCCSS-HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEE
T ss_pred CCCeEEecccccccc-HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEE
Confidence 456899999999986 5677777765211 0 35754 578999999999987 6789999
Q ss_pred EeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHH-HCCCEEEEecCCC--CCCCCHHHHHHhhcc-----CCceEE
Q 025730 151 VGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAA-VNGAAVVKVPRKS--DFSLNVELIADAVER-----EKPKCI 222 (249)
Q Consensus 151 vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~-~~G~~v~~v~~~~--~~~id~e~l~~~i~~-----~~~k~i 222 (249)
+|+|+++++..++.+++++||.|+++.|+|..+...+. ..|++++.++.+. +|.+|++++++++++ .++++|
T Consensus 116 ~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 195 (435)
T 3piu_A 116 LTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGV 195 (435)
T ss_dssp EEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999998888777 6899999999653 467999999999873 278999
Q ss_pred EEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 223 FLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 223 ~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++++||||||.+++.+++ +.++|++||
T Consensus 196 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 224 (435)
T 3piu_A 196 LVTNPSNPLGTTMTRNELYLLLSFVEDKG 224 (435)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999987744 667888875
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-19 Score=160.15 Aligned_cols=156 Identities=16% Similarity=0.165 Sum_probs=125.6
Q ss_pred CCCeeeccCCCC-CC----CCCHHHHHHHHh-cc---CCCCC-CCcChHHHHHHHHHHc-C-----CCCCCEEE--eCCH
Q 025730 94 PEDIVKIDANEN-PY----GPPPEVREALGQ-LK---FPYIY-PDPESRRLRAALAKDS-G-----LESDHILV--GCGA 155 (249)
Q Consensus 94 ~~~~I~L~~~~~-~~----~~p~~v~~al~~-~~---~~~~Y-p~~g~~~lr~~la~~~-~-----~~~~~I~v--t~Ga 155 (249)
..++|+|+.|.+ ++ .+++.+.+++.+ .. ....| +..+..+||+++++++ + +++++|++ |+|+
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~ 107 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSG 107 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccch
Confidence 457899999974 22 467888888876 32 23568 5678999999999998 4 36789999 9999
Q ss_pred HHHHHHHH--HHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC-C-CCCCCCHHHHHHhhccC--CceEEEEcCCCC
Q 025730 156 DELIDLIM--RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR-K-SDFSLNVELIADAVERE--KPKCIFLTSPNN 229 (249)
Q Consensus 156 ~~~l~~~~--~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~-~-~~~~id~e~l~~~i~~~--~~k~i~l~~PnN 229 (249)
++++.+++ ...+.+||+|++++|+|..|...++..|++++.++. + +++.+|++++++++++. ++.++++++|||
T Consensus 108 ~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~n 187 (412)
T 1yaa_A 108 TGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHN 187 (412)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCT
T ss_pred HhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 99999984 344679999999999999999999999999999997 3 36889999999998743 234555599999
Q ss_pred ccccCCChHHH--HHHHhhhhC
Q 025730 230 PDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 230 PTG~~~~~~e~--i~~i~~~~~ 249 (249)
|||.+++.+++ +..+|++||
T Consensus 188 PtG~~~~~~~l~~l~~~~~~~~ 209 (412)
T 1yaa_A 188 PTGLDPTSEQWVQIVDAIASKN 209 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCC
Confidence 99999887754 777888875
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-20 Score=170.05 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=125.5
Q ss_pred CCeeeccCCCCCCCCC---HHHHHHH--Hh-cc----CCCCCCC-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHH--HH
Q 025730 95 EDIVKIDANENPYGPP---PEVREAL--GQ-LK----FPYIYPD-PESRRLRAALAKDSGLESDHILVGCGADELI--DL 161 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p---~~v~~al--~~-~~----~~~~Yp~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l--~~ 161 (249)
...|+|..|.++.... +.+.+++ .+ +. ...+|++ .|..+||+++++++++++++|++|+|+++++ ++
T Consensus 33 ~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~ 112 (427)
T 3ppl_A 33 NLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDV 112 (427)
T ss_dssp CCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHH
T ss_pred CceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHH
Confidence 3569999998875432 2355555 33 22 2367865 5899999999999999999999999999999 58
Q ss_pred HHHHhcC--C----------CCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEc-CCC
Q 025730 162 IMRCVLD--P----------GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLT-SPN 228 (249)
Q Consensus 162 ~~~~~~~--p----------Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~-~Pn 228 (249)
+++++++ | ||+|++++|+|..|...++..|++++.++.+++ ++|++++++++++.++++|+++ +||
T Consensus 113 ~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~-g~d~~~l~~~l~~~~~~~v~~~p~~~ 191 (427)
T 3ppl_A 113 ISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED-GPDMDAVEELVKNPQVKGMWVVPVFS 191 (427)
T ss_dssp HHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT-EECHHHHHHHTTSTTEEEEEECCSSC
T ss_pred HHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC-CCCHHHHHHHHhcCCCeEEEECCCCC
Confidence 8888877 6 999999999999999999999999999997654 5999999999964689999866 889
Q ss_pred CccccCCChHH--HHHHHh-hhhC
Q 025730 229 NPDGRFSWTSS--WIWGIS-SEHN 249 (249)
Q Consensus 229 NPTG~~~~~~e--~i~~i~-~~~~ 249 (249)
||||.+++.++ .+.++| ++||
T Consensus 192 NPtG~~~~~~~~~~l~~~a~~~~~ 215 (427)
T 3ppl_A 192 NPTGFTVTEDVAKRLSAMETAAPD 215 (427)
T ss_dssp TTTCCCCCHHHHHHHHHCCCSSTT
T ss_pred CCCCccCCHHHHHHHHHHHhhcCC
Confidence 99999998874 356677 7764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-19 Score=159.89 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=128.4
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCCc-----------ChHHHHHHHHHHcCCCCCCEEEeCCHHHH
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPDP-----------ESRRLRAALAKDSGLESDHILVGCGADEL 158 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~~-----------g~~~lr~~la~~~~~~~~~I~vt~Ga~~~ 158 (249)
..++.|.|+.+.+. ++++.+.+++.+ +. ....+|.. ...++++.+++++++++++|++|+|++++
T Consensus 19 ~~~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a 97 (423)
T 3lvm_A 19 AMKLPIYLDYSATT-PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATES 97 (423)
T ss_dssp -CCSSEECBTTTCC-CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHH
T ss_pred ccCCCEeecCCCcC-CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHH
Confidence 45678999988876 678999999986 44 22222221 23689999999999988999999999999
Q ss_pred HHHHHHHhcC----CCCeEEEcCCCChhHHHHH---HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcc
Q 025730 159 IDLIMRCVLD----PGDKIVDCPPTFTMYEFDA---AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPD 231 (249)
Q Consensus 159 l~~~~~~~~~----pGd~Vlv~~P~y~~~~~~~---~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPT 231 (249)
+.+++.++.+ +||+|+++.|+|..+...+ +..|++++.++.+.++.+|+++++++++ .++++|++++|+|||
T Consensus 98 ~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~npt 176 (423)
T 3lvm_A 98 DNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR-DDTILVSIMHVNNEI 176 (423)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC-TTEEEEECCSBCTTT
T ss_pred HHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcC-CCcEEEEEeCCCCCC
Confidence 9999998874 8999999999999877666 4469999999988888999999999998 689999999999999
Q ss_pred ccCCChHHHHHHHhhhhC
Q 025730 232 GRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~e~i~~i~~~~~ 249 (249)
|.+++ .+.+.++|++||
T Consensus 177 G~~~~-l~~i~~l~~~~~ 193 (423)
T 3lvm_A 177 GVVQD-IAAIGEMCRARG 193 (423)
T ss_dssp CBBCC-HHHHHHHHHHHT
T ss_pred ccccC-HHHHHHHHHHcC
Confidence 99976 566888899875
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-20 Score=165.51 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=125.4
Q ss_pred ccCCCCCCCCCHHHHHHHHhccCCCCC-CC--cChHHHHHHHHHHcCCCCC-CEEEeCCHHHHHHHHHHHhcCCCCeEEE
Q 025730 100 IDANENPYGPPPEVREALGQLKFPYIY-PD--PESRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVD 175 (249)
Q Consensus 100 L~~~~~~~~~p~~v~~al~~~~~~~~Y-p~--~g~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv 175 (249)
+..++++.++++.+.+++.+.... .| +. ....+++++++++++.+++ +|++|+|+++++.+++.+++++||+|++
T Consensus 20 ~~~~~~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~ 98 (396)
T 2ch1_A 20 IMMGPGPSNCSKRVLTAMTNTVLS-NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLI 98 (396)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCCCC-TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEE
T ss_pred eeecCCCCCCCHHHHHHhcccccc-CCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEE
Confidence 556788888999999998863221 23 32 2378899999999999888 8999999999999999999999999999
Q ss_pred cCCCChhHH--HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 176 CPPTFTMYE--FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 176 ~~P~y~~~~--~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++|+|..|. ..++..|++++.++.+.++.+|++++++++++.++++|++++||||||.+++ .+.+.++|+++|
T Consensus 99 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~-~~~i~~l~~~~~ 173 (396)
T 2ch1_A 99 AVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP-LEGVGQICHQHD 173 (396)
T ss_dssp EESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC-CTTHHHHHHHTT
T ss_pred EcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC-HHHHHHHHHHcC
Confidence 999999885 3678899999999987778899999999997337999999999999999976 556777888875
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=162.25 Aligned_cols=149 Identities=21% Similarity=0.323 Sum_probs=121.3
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-cc------CCCCC-CCcChHHHHHHHHHH--cC-CCCCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LK------FPYIY-PDPESRRLRAALAKD--SG-LESDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~------~~~~Y-p~~g~~~lr~~la~~--~~-~~~~~I~vt~Ga~~~l~~~ 162 (249)
+.++|+|+.|++++++++.+.+++.+ +. ....| +..+..+||++++++ +| +++++|++|+|+++++.++
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~ 111 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRL 111 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHH
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHH
Confidence 45789999999999899998888765 21 13568 456889999999999 57 7889999999999999997
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCE-EEEecCCCC--CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAA-VVKVPRKSD--FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~-v~~v~~~~~--~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
+. ++.+||+|+++.|+|..|...++..|.+ ++.++.+++ +..|+++ + .++++|++++||||||.+++.++
T Consensus 112 ~~-~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~----~--~~~~~v~l~~p~nptG~~~~~~~ 184 (400)
T 3asa_A 112 LS-FFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE----D--THIDILCLCSPNNPTGTVLNKDQ 184 (400)
T ss_dssp HH-HHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCT----T--CCCSEEEEESSCTTTCCCCCHHH
T ss_pred HH-HcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhh----c--cCccEEEEeCCCCCCCCcCCHHH
Confidence 65 5689999999999999999999999998 999986533 3344321 1 47899999999999999988764
Q ss_pred H--HHHHhhhhC
Q 025730 240 W--IWGISSEHN 249 (249)
Q Consensus 240 ~--i~~i~~~~~ 249 (249)
+ +.++|+++|
T Consensus 185 l~~l~~~~~~~~ 196 (400)
T 3asa_A 185 LRAIVHYAIEHE 196 (400)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 4 677888875
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=157.75 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=121.4
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCc----------ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 98 VKIDANENPYGPPPEVREALGQ-LKFPYIYPDP----------ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~----------g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
|.|+.+.+ .++++.+.+++.+ +.....+|.. ...++++.+++++++++++|++|+|+++++.++++++
T Consensus 2 iyld~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~ 80 (382)
T 4hvk_A 2 AYFDYTSA-KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp CBCBTTTC-CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHH
T ss_pred EeecCCCc-CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHh
Confidence 45665544 3567888888876 3332333322 1348999999999998889999999999999999998
Q ss_pred c----CCCCeEEEcCCCChhHHHHHHH---CCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 167 L----DPGDKIVDCPPTFTMYEFDAAV---NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 167 ~----~pGd~Vlv~~P~y~~~~~~~~~---~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
+ ++||+|+++.++|+.+...+.. .|++++.++.++++.+|+++++++++ +++++|++++||||||.+++ .+
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~nptG~~~~-~~ 158 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR-DDTILVSVQHANNEIGTIQP-VE 158 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCC-TTEEEEECCSBCTTTCBBCC-HH
T ss_pred hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhc-cCceEEEEECCCCCceeeCC-HH
Confidence 7 9999999999999977665444 69999999988888999999999998 68999999999999999965 56
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+.++|++||
T Consensus 159 ~i~~l~~~~~ 168 (382)
T 4hvk_A 159 EISEVLAGKA 168 (382)
T ss_dssp HHHHHHSSSS
T ss_pred HHHHHHHHcC
Confidence 7788898875
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-20 Score=162.88 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=125.5
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC-----CC---CCCC--cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF-----PY---IYPD--PESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~-----~~---~Yp~--~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
+.++|+.+.. .+.|+.+.+++.+ +.. .. .|++ .+..++++++++++|+++++|++|+|+++++.++++
T Consensus 16 ~~i~l~~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~ 94 (390)
T 1elu_A 16 NKTYFNFGGQ-GILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLW 94 (390)
T ss_dssp TSEECCTTTC-CCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHH
T ss_pred CeEEecCCcc-CCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHh
Confidence 4689988873 4567788888765 221 11 4654 567899999999999988899999999999999999
Q ss_pred Hh-cCCCCeEEEcCCCChhHHHH----HHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 165 CV-LDPGDKIVDCPPTFTMYEFD----AAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 165 ~~-~~pGd~Vlv~~P~y~~~~~~----~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
++ +++||+|+++.|+|..+... ++..|++++.++.+ +++.+|+++++++++ .++++|++++|+||||.+++
T Consensus 95 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~nptG~~~~- 172 (390)
T 1elu_A 95 GLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG-PKTRLVILSHLLWNTGQVLP- 172 (390)
T ss_dssp HSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC-TTEEEEEEESBCTTTCCBCC-
T ss_pred CCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC-CCceEEEEeccccCCceecC-
Confidence 99 89999999999999976543 56689999999975 578899999999998 68999999999999999976
Q ss_pred HHHHHHHhh----hhC
Q 025730 238 SSWIWGISS----EHN 249 (249)
Q Consensus 238 ~e~i~~i~~----~~~ 249 (249)
.+.+.++|+ +||
T Consensus 173 ~~~i~~l~~~~~~~~~ 188 (390)
T 1elu_A 173 LAEIMAVCRRHQGNYP 188 (390)
T ss_dssp HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHhhhhhhcC
Confidence 667778888 765
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-19 Score=160.97 Aligned_cols=182 Identities=15% Similarity=0.101 Sum_probs=133.2
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCC---CCC--CCCHHHHHHHHhc---cCCCCC-CCcChHHHHHH
Q 025730 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANE---NPY--GPPPEVREALGQL---KFPYIY-PDPESRRLRAA 137 (249)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~---~~~--~~p~~v~~al~~~---~~~~~Y-p~~g~~~lr~~ 137 (249)
..+++.++... |..++..++..+..+..+.|+|++|. ..- +..+.|++|...+ ...+.| |..|.++||++
T Consensus 17 ~~~~~~~v~~~-p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~a 95 (420)
T 4h51_A 17 TAERWQKIQAQ-APDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDE 95 (420)
T ss_dssp HHHHHHTCCCC-CCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHH
T ss_pred hhHHHhCCCCC-CCChHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHH
Confidence 45667777666 44566667666655555689999993 222 2347888876542 233569 77899999999
Q ss_pred HHHHc-C--CCCCC--EEEeCCHHHHHHHHHHH----hcCCCCeEEEcCCCChhHHHHHHHCCCEEEE-ec--CCCCCCC
Q 025730 138 LAKDS-G--LESDH--ILVGCGADELIDLIMRC----VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVK-VP--RKSDFSL 205 (249)
Q Consensus 138 la~~~-~--~~~~~--I~vt~Ga~~~l~~~~~~----~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~-v~--~~~~~~i 205 (249)
+++++ | ...+. .+.|.|++.++...+.. +++|||+|++++|+|+.|..+++..|++.+. ++ ..+.+.+
T Consensus 96 ia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~ 175 (420)
T 4h51_A 96 AVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSL 175 (420)
T ss_dssp HHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEE
T ss_pred HHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCC
Confidence 99986 3 33333 34588888887766554 4579999999999999999999999997543 33 2355788
Q ss_pred CHHHHHHhhcc--CCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 206 NVELIADAVER--EKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 206 d~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
|++.+.+.++. ++++++++++||||||.+++.+++ +..+|++++
T Consensus 176 d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~ 223 (420)
T 4h51_A 176 NFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKH 223 (420)
T ss_dssp CHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 99998887742 567788888999999999999866 677888765
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-20 Score=171.28 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=117.0
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-c-cC-CCC--CCC-c-C---hHHHHHHHHHHcC------CCCCCEEEeCCHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-L-KF-PYI--YPD-P-E---SRRLRAALAKDSG------LESDHILVGCGADE 157 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~-~~-~~~--Yp~-~-g---~~~lr~~la~~~~------~~~~~I~vt~Ga~~ 157 (249)
+..+|+|+.|++++++++.+.+++.+ + .. ..+ |++ . | ..+||++++++++ +++++|++|+|+++
T Consensus 55 ~~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~ 134 (427)
T 2hox_A 55 QGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQ 134 (427)
T ss_dssp TTCCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHH
T ss_pred CCceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHH
Confidence 45679999999999888888888775 3 22 233 865 3 6 8999999999985 67899999999999
Q ss_pred HHHHHHHHh--------cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCC
Q 025730 158 LIDLIMRCV--------LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNN 229 (249)
Q Consensus 158 ~l~~~~~~~--------~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnN 229 (249)
+|.+++.++ +++||+|++++|+|..|...++..|++++. +.+|+++|+++++ .++|+|+++||||
T Consensus 135 al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~------~~~d~~~l~~~~~-~~~k~v~l~~p~N 207 (427)
T 2hox_A 135 LIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV------WAGNAANYVNVSN-PEQYIEMVTSPNN 207 (427)
T ss_dssp HHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE------EEEEGGGGTTCSC-GGGEEEEEESSCT
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeee------ecCCHHHHHHhhc-CCceEEEEcCCCC
Confidence 999999999 999999999999999999999999998764 3567888888887 5789999999999
Q ss_pred ccccCCC
Q 025730 230 PDGRFSW 236 (249)
Q Consensus 230 PTG~~~~ 236 (249)
|||.+++
T Consensus 208 PtG~~~~ 214 (427)
T 2hox_A 208 PEGLLRH 214 (427)
T ss_dssp TTCCCCC
T ss_pred CcccccH
Confidence 9999987
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-19 Score=156.93 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=122.5
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-ccCC----C-CCCC-----cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 98 VKIDANENPYGPPPEVREALGQ-LKFP----Y-IYPD-----PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~~~~----~-~Yp~-----~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
+.|+.+.+. ++++.+++++.+ +... . .|+. ....++++++++++|+++++|++|+|+++++.+++.++
T Consensus 2 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l 80 (382)
T 4eb5_A 2 AYFDYTSAK-PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp CBCBTTTCC-CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHH
T ss_pred eeeccCCCC-CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHH
Confidence 456666654 578888888875 3221 1 2431 24678999999999998889999999999999999998
Q ss_pred c----CCCCeEEEcCCCChhHHHHHHH---CCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 167 L----DPGDKIVDCPPTFTMYEFDAAV---NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 167 ~----~pGd~Vlv~~P~y~~~~~~~~~---~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
. ++||+|++++|+|..+...+.. .|++++.++.++++.+|+++++++++ .++++|++++|+||||.+++ .+
T Consensus 81 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~nptG~~~~-l~ 158 (382)
T 4eb5_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR-DDTILVSVQHANNEIGTIQP-VE 158 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCC-TTEEEEECCSBCTTTCBBCC-HH
T ss_pred HhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhc-CCCeEEEEeccCCCccccCC-HH
Confidence 7 8999999999999877666553 69999999987778899999999998 68999999999999999965 56
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+..+|++||
T Consensus 159 ~i~~l~~~~~ 168 (382)
T 4eb5_A 159 EISEVLAGKA 168 (382)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHHHHCC
Confidence 7788898875
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-19 Score=156.94 Aligned_cols=125 Identities=21% Similarity=0.258 Sum_probs=111.2
Q ss_pred CCC-CCcChHHHHHHHHHHc-CCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-
Q 025730 124 YIY-PDPESRRLRAALAKDS-GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK- 200 (249)
Q Consensus 124 ~~Y-p~~g~~~lr~~la~~~-~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~- 200 (249)
..| +..+..+||+++++++ ++++++|++|+|+++++.+++++++++||+|+++.|+|..+...++..|++++.++.+
T Consensus 57 ~~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 136 (375)
T 3op7_A 57 LNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEE 136 (375)
T ss_dssp CSSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEG
T ss_pred cCCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccc
Confidence 456 5567899999999998 5788999999999999999999999999999999999999999999999999999854
Q ss_pred -CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH--HHHHHhhhhC
Q 025730 201 -SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS--WIWGISSEHN 249 (249)
Q Consensus 201 -~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e--~i~~i~~~~~ 249 (249)
+++.+|+++++++++ .++++|++++||||||.+++.++ .+.++|++||
T Consensus 137 ~~~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~ 187 (375)
T 3op7_A 137 ENGWLPDLEKLRQLIR-PTTKMICINNANNPTGAVMDRTYLEELVEIASEVG 187 (375)
T ss_dssp GGTTEECHHHHHHHCC-TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTT
T ss_pred cCCCCCCHHHHHHhhc-cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 456689999999998 68999999999999999987654 4677888875
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-21 Score=172.62 Aligned_cols=153 Identities=18% Similarity=0.290 Sum_probs=130.6
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCCcChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHHHHHHhc
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPDPESRRLRAALAKDS----G--LESDHILVGCGADELIDLIMRCVL 167 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~~~~~~~ 167 (249)
++|+|+.+++++++++.+.+++.+ +.. ...|++. ..++++++++++ | +++++|++|+|+++++.+++++++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~ 110 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTYA-SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT 110 (392)
Confidence 789999999999999999999876 432 3678765 788999999986 4 567899999999999999999999
Q ss_pred CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-C--CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH--HHHH
Q 025730 168 DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-S--DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS--SWIW 242 (249)
Q Consensus 168 ~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~--~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~--e~i~ 242 (249)
++||+|+++.|+|..+...++..|++++.++.+ + +|.+|++++++++++.++++|++++||||||.+++.+ +.+.
T Consensus 111 ~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~ 190 (392)
T 3b1d_A 111 KEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIG 190 (392)
Confidence 999999999999999999998899999999863 2 3569999999998755789999999999999998765 3467
Q ss_pred HHhhhhC
Q 025730 243 GISSEHN 249 (249)
Q Consensus 243 ~i~~~~~ 249 (249)
++|++||
T Consensus 191 ~~~~~~~ 197 (392)
T 3b1d_A 191 HLCQKHH 197 (392)
Confidence 7787764
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-19 Score=159.15 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=124.1
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccCC-----CCCC-----CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKFP-----YIYP-----DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~~-----~~Yp-----~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
+.+.|+.+.+. ++++.+.+++.+ +... ..|+ .....++++++++++|+++++|++|+|+++++.+++.
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~ 104 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAE 104 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHH
Confidence 47899998887 678888888865 3211 2343 2346789999999999988899999999999999999
Q ss_pred Hh---cCCCCeEEEcCCCChhHHHHH----HHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 165 CV---LDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 165 ~~---~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
++ +++||+|+++.|+|..+...+ +..|++++.++.+ +++.+|+++|+++++ .++++|++++|+||||.+++
T Consensus 105 ~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~~~ 183 (406)
T 3cai_A 105 ASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLIS-KSTRLVAVNSASGTLGGVTD 183 (406)
T ss_dssp HTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCC-TTEEEEEEESBCTTTCBBCC
T ss_pred HHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhC-CCceEEEEeCCcCCccccCC
Confidence 87 789999999999998644333 3379999999976 677899999999997 68999999999999999965
Q ss_pred hHHHHHHHhhhhC
Q 025730 237 TSSWIWGISSEHN 249 (249)
Q Consensus 237 ~~e~i~~i~~~~~ 249 (249)
.+.+.++|+++|
T Consensus 184 -l~~i~~l~~~~~ 195 (406)
T 3cai_A 184 -LRAMTKLVHDVG 195 (406)
T ss_dssp -CHHHHHHHHHTT
T ss_pred -HHHHHHHHHHcC
Confidence 667788898875
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-19 Score=157.55 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=126.5
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC----CCCC-------CCcChHHHHHHHHHHcCC-CCCCEEEeCCHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF----PYIY-------PDPESRRLRAALAKDSGL-ESDHILVGCGADELIDLI 162 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~----~~~Y-------p~~g~~~lr~~la~~~~~-~~~~I~vt~Ga~~~l~~~ 162 (249)
++++|+.+.+. +.|+.+.+++.+ +.. .++| +..+..+++++++++++. ++++|++|+|+++++.++
T Consensus 23 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~ 101 (406)
T 1kmj_A 23 PLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLV 101 (406)
T ss_dssp ECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHH
T ss_pred ceEEecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHH
Confidence 57999999988 577888888865 321 1222 233568899999999998 678999999999999999
Q ss_pred HHHh----cCCCCeEEEcCCCCh----hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 163 MRCV----LDPGDKIVDCPPTFT----MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 163 ~~~~----~~pGd~Vlv~~P~y~----~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
+.++ +++||+|+++.|+|. .|...++..|++++.++.++++.+|+++++++++ .++++|++++|+||||.+
T Consensus 102 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~ 180 (406)
T 1kmj_A 102 ANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD-EKTRLLAITHVSNVLGTE 180 (406)
T ss_dssp HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCC-TTEEEEEEESBCTTTCCB
T ss_pred HHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhc-cCCeEEEEeCCCccccCc
Confidence 9999 899999999999985 3555677789999999987778899999999998 689999999999999999
Q ss_pred CChHHHHHHHhhhhC
Q 025730 235 SWTSSWIWGISSEHN 249 (249)
Q Consensus 235 ~~~~e~i~~i~~~~~ 249 (249)
++ .+.+.++|++||
T Consensus 181 ~~-l~~i~~l~~~~~ 194 (406)
T 1kmj_A 181 NP-LAEMITLAHQHG 194 (406)
T ss_dssp CC-HHHHHHHHHHTT
T ss_pred CC-HHHHHHHHHHcC
Confidence 76 677788898875
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-19 Score=164.34 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=122.2
Q ss_pred CCee-eccCCCCCCCCC--HHHHHHHHh-ccC-------C------CCCC-CcChHHHHHHHHHHc------CCCCCCEE
Q 025730 95 EDIV-KIDANENPYGPP--PEVREALGQ-LKF-------P------YIYP-DPESRRLRAALAKDS------GLESDHIL 150 (249)
Q Consensus 95 ~~~I-~L~~~~~~~~~p--~~v~~al~~-~~~-------~------~~Yp-~~g~~~lr~~la~~~------~~~~~~I~ 150 (249)
+++| +|+.+.+...++ +.+.+++.+ +.. . ..|+ ..+..+||+++|+++ ++++++|+
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~ 110 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIA 110 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEE
Confidence 5789 999998887433 345555554 222 2 4685 457899999999998 57889999
Q ss_pred EeCCHHHHHHHHHHHhcCCCC--------------eEEEc-CCCChhHHHH------HHHCCCEEEEecCCC-----CCC
Q 025730 151 VGCGADELIDLIMRCVLDPGD--------------KIVDC-PPTFTMYEFD------AAVNGAAVVKVPRKS-----DFS 204 (249)
Q Consensus 151 vt~Ga~~~l~~~~~~~~~pGd--------------~Vlv~-~P~y~~~~~~------~~~~G~~v~~v~~~~-----~~~ 204 (249)
+|+|+++++.+++.+++++|| +|+++ +|+|..|... ....|.+++.++.+. ++.
T Consensus 111 ~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 190 (444)
T 3if2_A 111 LTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYR 190 (444)
T ss_dssp EESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEE
T ss_pred EecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccC
Confidence 999999999999999999998 78876 9999988763 334688888888653 257
Q ss_pred CCHHHHHHh---hccCCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 205 LNVELIADA---VEREKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 205 id~e~l~~~---i~~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+|+++|+++ ++ .++++|++++||||||.+++.+++ +..+|++||
T Consensus 191 ~d~~~l~~~l~~~~-~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~ 239 (444)
T 3if2_A 191 VDFEALENLPALKE-GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYD 239 (444)
T ss_dssp CCHHHHHTCHHHHT-TCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhcC-CCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCC
Confidence 999999998 55 689999999999999999887654 667888875
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=152.07 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=122.7
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCC
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF-PYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGD 171 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd 171 (249)
+.+|+|+.+.+. ++++.+.+++.+ +.. ...+ ...-..++++.+++++|.++++|++|+|+++++.++++.++++||
T Consensus 13 p~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~gd 91 (359)
T 1svv_A 13 PKPYSFVNDYSV-GMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWE 91 (359)
T ss_dssp --CEECSCSCSS-CCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTE
T ss_pred CeeEEecCCCcC-CCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhCCCC
Confidence 357999998877 678899999887 432 1111 111245677788888898888999999999999999999999999
Q ss_pred eEEEcCCCChhHHH--HHHHCCCEEEEecCCCCCCCCHHHHHHhhccC------CceEEEEcCCCCccccCCChH--HHH
Q 025730 172 KIVDCPPTFTMYEF--DAAVNGAAVVKVPRKSDFSLNVELIADAVERE------KPKCIFLTSPNNPDGRFSWTS--SWI 241 (249)
Q Consensus 172 ~Vlv~~P~y~~~~~--~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~------~~k~i~l~~PnNPTG~~~~~~--e~i 241 (249)
+|++++|+|..+.. .++..|++++.++.+ ++.+|++++++++++. ++++|++++| ||||.+++.+ +.+
T Consensus 92 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i 169 (359)
T 1svv_A 92 AVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDI 169 (359)
T ss_dssp EEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHH
T ss_pred EEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHH
Confidence 99999999998776 477899999999975 7889999999999743 3899999999 7999998764 347
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|++||
T Consensus 170 ~~~~~~~~ 177 (359)
T 1svv_A 170 SASCKEHG 177 (359)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 78888875
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=169.80 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=119.8
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCc-ChHHHHHHHHHHc-------CC---CCCCEEEeCCHHHHHHHHHH
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LKFPYIYPDP-ESRRLRAALAKDS-------GL---ESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~-g~~~lr~~la~~~-------~~---~~~~I~vt~Ga~~~l~~~~~ 164 (249)
+|+|+.|++.++ ++.+.+++.+ +. ...||++ |..++|+++++++ ++ ++++|++|+|+++++.++++
T Consensus 106 ~i~l~~g~~~~~-~~~~~~al~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~ 183 (546)
T 2zy4_A 106 SLSYVRDQLGLD-PAAFLHEMVDGIL-GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFE 183 (546)
T ss_dssp HHHHHHHTSCCC-HHHHHHHHHHHHH-TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHH
T ss_pred hhecccCCCCCC-ChHHHHHHHHhhh-cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHH
Confidence 689999998874 4556566654 33 3689765 7888999887754 22 35799999999999999998
Q ss_pred H-----hcCCCCeEEEcCCCChhHHHHHHH--CCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 165 C-----VLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 165 ~-----~~~pGd~Vlv~~P~y~~~~~~~~~--~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
+ ++++||+|++++|+|..|...+.. .|++++.++.+ .+|.+|+++++++++ .++++|++||||||||.++
T Consensus 184 ~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~v~l~~p~NPtG~~~ 262 (546)
T 2zy4_A 184 SLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD-PAIKIFFCVNPSNPPSVKM 262 (546)
T ss_dssp HHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS-TTEEEEEEESSCSSSCBCC
T ss_pred HhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC-CCCeEEEEECCCCCCCccC
Confidence 7 578999999999999999987665 46899999864 347799999998876 6899999999999999999
Q ss_pred ChHHH--HHHHh--hhhC
Q 025730 236 WTSSW--IWGIS--SEHN 249 (249)
Q Consensus 236 ~~~e~--i~~i~--~~~~ 249 (249)
+.+++ +..+| +++|
T Consensus 263 ~~~~l~~l~~~a~~~~~~ 280 (546)
T 2zy4_A 263 DQRSLERVRNIVAEHRPD 280 (546)
T ss_dssp CHHHHHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHhccCC
Confidence 88765 55666 5553
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-19 Score=157.01 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=123.1
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-ccC----CC-CCC-----CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LKF----PY-IYP-----DPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~~----~~-~Yp-----~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
.++.|.|+.+.+. ++++.+.+++.+ +.. .. .|. .....++++++++++++++++|++|+|+++++.++
T Consensus 18 ~~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~ 96 (400)
T 3vax_A 18 GSHMTYLDAAATT-RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIA 96 (400)
T ss_dssp ----CCCCCCCCS-SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHH
T ss_pred cCCcEEecCCCCC-CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHH
Confidence 4567889888776 677888888765 321 11 121 12257899999999999889999999999999999
Q ss_pred HHHhc----CCCC-eEEEcCCCChhHHHHHHH---CCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 163 MRCVL----DPGD-KIVDCPPTFTMYEFDAAV---NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 163 ~~~~~----~pGd-~Vlv~~P~y~~~~~~~~~---~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
+++++ ++|| +|+++.++|+.+...+.. .|++++.++.+.++.+|+++++++++ .++++|++++||||||.+
T Consensus 97 ~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~nptG~~ 175 (400)
T 3vax_A 97 LLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLR-PDTLLVSLMHVNNETGVI 175 (400)
T ss_dssp HHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCC-TTEEEEECCSBCTTTCBB
T ss_pred HHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcC-CCceEEEEECCCCCceee
Confidence 99987 8999 999999999876555444 69999999988888999999999998 689999999999999999
Q ss_pred CChHHHHHHHhhhhC
Q 025730 235 SWTSSWIWGISSEHN 249 (249)
Q Consensus 235 ~~~~e~i~~i~~~~~ 249 (249)
++ .+.+.++|++||
T Consensus 176 ~~-l~~i~~la~~~~ 189 (400)
T 3vax_A 176 QP-VAELAQQLRATP 189 (400)
T ss_dssp CC-HHHHHHHHTTSS
T ss_pred Cc-HHHHHHHHHhcC
Confidence 65 567788898875
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-19 Score=156.31 Aligned_cols=146 Identities=12% Similarity=0.022 Sum_probs=121.0
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCCCC--CcChHHHHHHHHHHcCCCC--CCEEEeCCHHHHHHHHHHHhcCCCCeEEEcC
Q 025730 102 ANENPYGPPPEVREALGQLKFPYIYP--DPESRRLRAALAKDSGLES--DHILVGCGADELIDLIMRCVLDPGDKIVDCP 177 (249)
Q Consensus 102 ~~~~~~~~p~~v~~al~~~~~~~~Yp--~~g~~~lr~~la~~~~~~~--~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~ 177 (249)
.+..+.++++.+.+++.+....+.++ .....++++.+++++++++ ++|++|+|+++++. ++..++++||+|++++
T Consensus 6 ~~~gp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~ 84 (384)
T 3zrp_A 6 LHVGPTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVS 84 (384)
T ss_dssp CCSSCSCCCHHHHHHTTCCSCCTTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEEC
T ss_pred ccCCCCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEec
Confidence 34456778899999987632212222 2346789999999999887 88999999999999 9999999999999999
Q ss_pred CCChh--HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 178 PTFTM--YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 178 P~y~~--~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+|.. +...++..|++++.++.+.++.+|++++++++++.++++|++++|+||||.+++ .+.+.++|++||
T Consensus 85 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 157 (384)
T 3zrp_A 85 NGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP-VKDVINKIRKYV 157 (384)
T ss_dssp SSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC-HHHHHHHHGGGE
T ss_pred CCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc-HHHHHHHHHhcC
Confidence 99954 666677789999999988888899999999998558999999999999999965 666888899875
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-19 Score=157.89 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=121.8
Q ss_pred eeeccCCCCCCCCCHHHHHHHHhccCCCCCC--CcChHHHHHHHHHHcCCCCC-CEEEeCCHHHHHHHHHHHhcCCCCeE
Q 025730 97 IVKIDANENPYGPPPEVREALGQLKFPYIYP--DPESRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDPGDKI 173 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp--~~g~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~~~~~~~~pGd~V 173 (249)
.+.++. .++++++.+.+++.+......++ .....++++++++++|++++ +|++|+|+++++.+++.+++++||+|
T Consensus 20 ~~~~~~--g~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v 97 (393)
T 2huf_A 20 KLLMGP--GPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVI 97 (393)
T ss_dssp CEECSS--SCCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEE
T ss_pred eEEecC--CCCCCCHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEE
Confidence 455544 46778899999988632212122 23578999999999999876 89999999999999999999999999
Q ss_pred EEcCCCChhH--HHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 174 VDCPPTFTMY--EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 174 lv~~P~y~~~--~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++++|+|..+ ...++..|++++.++.+.++.+|++++++++++.++++|++++||||||.+++ .+.+..+|++||
T Consensus 98 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-l~~i~~~~~~~~ 174 (393)
T 2huf_A 98 LIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQG-LEGVGALCHQHN 174 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC-CTTHHHHHHHTT
T ss_pred EEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCC-HHHHHHHHHHcC
Confidence 9999999764 33456689999999987777899999999997327999999999999999975 566778888875
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-19 Score=169.70 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=123.6
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhccCCCCC--CCcChHHHHHHHHHHc-----C-CC---CCCEEEeCCHHHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQLKFPYIY--PDPESRRLRAALAKDS-----G-LE---SDHILVGCGADELIDLIMR 164 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Y--p~~g~~~lr~~la~~~-----~-~~---~~~I~vt~Ga~~~l~~~~~ 164 (249)
++|+|+.|.+.+++++.+.++...+.. ..| |..|..++|+++++++ + +. +++|++|+|+++++.+++.
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a~~~~~~~-~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~ 182 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAEWVNGAVA-NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFH 182 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHH
T ss_pred hheeccCCCCCcCCcHHHHHHHHHHHh-CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHH
Confidence 468999999988644444444444433 344 4568899999999997 2 22 3699999999999999999
Q ss_pred H-----hcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC----CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 165 C-----VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR----KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 165 ~-----~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~----~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
+ ++++||+|+++.|+|..|...++..|++++.++. +.++++|+++++++++ .++++|++++||||||.++
T Consensus 183 ~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~-~~~k~v~l~~p~NPtG~~~ 261 (533)
T 3f6t_A 183 SLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD-PSIKALIVVNPTNPTSKEF 261 (533)
T ss_dssp HHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC-TTEEEEEEESSCTTTCBCC
T ss_pred HhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC-CCCeEEEEeCCCCCCcccc
Confidence 8 7899999999999999999988889999999986 3568899999999997 7899999999999999998
Q ss_pred ChHHH--HHHHhh-hhC
Q 025730 236 WTSSW--IWGISS-EHN 249 (249)
Q Consensus 236 ~~~e~--i~~i~~-~~~ 249 (249)
+.+++ +..+|+ +||
T Consensus 262 ~~~~l~~l~~la~~~~~ 278 (533)
T 3f6t_A 262 DTNALNAIKQAVEKNPK 278 (533)
T ss_dssp CHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 87754 666777 454
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=154.67 Aligned_cols=150 Identities=13% Similarity=0.161 Sum_probs=123.7
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC--cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeE
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LKFPYIYPD--PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKI 173 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~--~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~V 173 (249)
.+.|+.+. +.++++.+.+++.+ +.. +.|+. ....++++++++++|+++++|++|+|+++++.+++++++++||+|
T Consensus 9 ~~yl~~~~-~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~V 86 (392)
T 2z9v_A 9 PVITLTAG-PVNAYPEVLRGLGRTVLY-DYDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVV 86 (392)
T ss_dssp CSEECSSS-CCCCCHHHHHHTTSCCCC-TTSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCE
T ss_pred cceeecCC-CcCCCHHHHHHHhccccc-cccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEE
Confidence 46777664 56788999999887 333 33332 246789999999999988999999999999999999999999999
Q ss_pred EEcCCCChhH--HHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 174 VDCPPTFTMY--EFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 174 lv~~P~y~~~--~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+++.|+|..+ ...++..|++++.++.+.++.+|++++++++++ .++++|++++|+||||.+++ .+.+.++|++||
T Consensus 87 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 164 (392)
T 2z9v_A 87 LNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP-IDAIGALVSAHG 164 (392)
T ss_dssp EEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC-HHHHHHHHHHTT
T ss_pred EEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc-HHHHHHHHHHcC
Confidence 9999999764 344555899999999877778999999999952 57899999999999999965 567788898875
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-19 Score=160.19 Aligned_cols=152 Identities=15% Similarity=0.214 Sum_probs=114.3
Q ss_pred CCeeeccCCCCCCCCC--HHHHHHHHhc-cC------CCCCC-CcChHHHHHHHHHHc------CCCCCCEEEeCCHHHH
Q 025730 95 EDIVKIDANENPYGPP--PEVREALGQL-KF------PYIYP-DPESRRLRAALAKDS------GLESDHILVGCGADEL 158 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p--~~v~~al~~~-~~------~~~Yp-~~g~~~lr~~la~~~------~~~~~~I~vt~Ga~~~ 158 (249)
+++|+|+.+.++..++ +.+.+++.+. .. ...|+ ..|..+||+++++++ ++++++|++|+|++++
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~a 110 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSA 110 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHH
Confidence 5789999999887443 4555666542 11 13685 457899999999997 5788999999999999
Q ss_pred HHHHHHHhcCCCC-----eEEEc-CCCChhHHHHHHH------CCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEc
Q 025730 159 IDLIMRCVLDPGD-----KIVDC-PPTFTMYEFDAAV------NGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLT 225 (249)
Q Consensus 159 l~~~~~~~~~pGd-----~Vlv~-~P~y~~~~~~~~~------~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~ 225 (249)
+++++++++++|| +|+++ +|+|..|...+.. .+..+..++.+ .++.+|+++++ ++ .++++|+++
T Consensus 111 l~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~-~~~~~v~~~ 187 (417)
T 3g7q_A 111 FFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG-EETGMICVS 187 (417)
T ss_dssp HHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CC-TTEEEEEEE
T ss_pred HHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cc-cCceEEEEC
Confidence 9999999999988 99997 9999988766532 34455566543 24678998887 55 689999999
Q ss_pred CCCCccccCCChHHH--HHHHhhhhC
Q 025730 226 SPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 226 ~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+||||||.+++.+++ +.++|++||
T Consensus 188 ~p~NptG~~~~~~~~~~l~~~a~~~~ 213 (417)
T 3g7q_A 188 RPTNPTGNVITDEELMKLDRLANQHN 213 (417)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHcC
Confidence 999999999887654 667888875
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=154.08 Aligned_cols=145 Identities=15% Similarity=0.132 Sum_probs=121.9
Q ss_pred CCCCCCCCHHHHHHHHhccCCCCCCCc---ChHHHHHHHHHHcCCCCC-CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCC
Q 025730 103 NENPYGPPPEVREALGQLKFPYIYPDP---ESRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPP 178 (249)
Q Consensus 103 ~~~~~~~p~~v~~al~~~~~~~~Yp~~---g~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P 178 (249)
+.++.++++.+.+++.+... ..|+.. ...++++.+++++|++++ +|++|+|+++++.+++.+++++||+|++++|
T Consensus 39 ~~~~~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~ 117 (393)
T 1vjo_A 39 GPGPSNAHPSVLQAMNVSPV-GHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVA 117 (393)
T ss_dssp SSSCCCCCHHHHHHHSSCCC-CTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred cCCCCCCCHHHHHHHhcccc-cccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcC
Confidence 34566788999999987322 256432 245678888888899888 9999999999999999999999999999999
Q ss_pred CChh--HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 179 TFTM--YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 179 ~y~~--~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|.. |...++..|++++.++.+.++.+|++++++++++.++++|++++|+||||.+++ .+.+.++|+++|
T Consensus 118 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 189 (393)
T 1vjo_A 118 GYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQP-LEGVGELCREFG 189 (393)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC-CTTHHHHHHHHT
T ss_pred ChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc-HHHHHHHHHHcC
Confidence 9998 888889999999999987778899999999997327899999999999999965 566778888875
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=153.54 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=117.0
Q ss_pred CCCCCCCCHHHHHHHHhccCCCCCCC--cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCC
Q 025730 103 NENPYGPPPEVREALGQLKFPYIYPD--PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF 180 (249)
Q Consensus 103 ~~~~~~~p~~v~~al~~~~~~~~Yp~--~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y 180 (249)
+-.+.++++.+.+++.+....+.|+. ....++++++++++|+++++|++|+|+++++.+++.+++++||+|++++|+|
T Consensus 6 ~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~ 85 (352)
T 1iug_A 6 TPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGK 85 (352)
T ss_dssp SSSSCCCCHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSH
T ss_pred cCCCCCCCHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCc
Confidence 34567788999999987322234443 2468899999999999888999999999999999999999999999999999
Q ss_pred hhHH--HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 181 TMYE--FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 181 ~~~~--~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
..+. ..++..|++++.++.+.++.+|++++++ .++++|++++||||||.+++ .+.+.++|++|
T Consensus 86 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~ 150 (352)
T 1iug_A 86 FSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK----EGYAGLLLVHSETSTGALAD-LPALARAFKEK 150 (352)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC----SSCSEEEEESEETTTTEECC-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc----cCCcEEEEEEecCCcceecC-HHHHHHHHHhh
Confidence 8764 4456689999999987777789888866 47899999999999999965 56778889887
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=150.23 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=122.4
Q ss_pred eeeccCCCCCCCCCHHHHHHHHhccCCCCCCC---cChHHHHHHHHHHcCCC--CCCEEEeCCHHHHHHHHHHHhcCCCC
Q 025730 97 IVKIDANENPYGPPPEVREALGQLKFPYIYPD---PESRRLRAALAKDSGLE--SDHILVGCGADELIDLIMRCVLDPGD 171 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~---~g~~~lr~~la~~~~~~--~~~I~vt~Ga~~~l~~~~~~~~~pGd 171 (249)
+++|+.| |+.+++.+.+++.+. ..+.|+. .+..++++++++++|.+ ++++++|+|+++++.+++++++++||
T Consensus 5 ~~~~~~g--p~~~~~~v~~a~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd 81 (366)
T 1m32_A 5 YLLLTPG--PLTTSRTVKEAMLFD-SCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQD 81 (366)
T ss_dssp CEECSSS--SCCCCHHHHHTTCCC-CCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTC
T ss_pred cccccCC--CcCCCHHHHHHHhhh-hcCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCC
Confidence 5788877 667889999998763 2244543 56889999999999932 24799999999999999999999999
Q ss_pred eEEEcC-CCChh-HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC-CceEEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 172 KIVDCP-PTFTM-YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE-KPKCIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 172 ~Vlv~~-P~y~~-~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~-~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
+|++.+ ++|.. +...++..|++++.++.+.++.+|++++++++++. ++++|++++|+||||.+++ .+.+.++|++|
T Consensus 82 ~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~ 160 (366)
T 1m32_A 82 KVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP-IDEVGALAHRY 160 (366)
T ss_dssp CEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC-HHHHHHHHHHH
T ss_pred eEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecC-HHHHHHHHHHc
Confidence 988776 66653 66777888999999998777789999999999753 5899999999999999975 66778889887
Q ss_pred C
Q 025730 249 N 249 (249)
Q Consensus 249 ~ 249 (249)
|
T Consensus 161 ~ 161 (366)
T 1m32_A 161 G 161 (366)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-18 Score=154.24 Aligned_cols=143 Identities=14% Similarity=0.097 Sum_probs=117.5
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-c------cCCCCCCCcChH---HHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhc
Q 025730 98 VKIDANENPYGPPPEVREALGQ-L------KFPYIYPDPESR---RLRAALAKDSGLESDHILVGCGADELIDLIMRCVL 167 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~------~~~~~Yp~~g~~---~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~ 167 (249)
..++.++++|.+++.+.+++.+ . ...+.|+..+.+ +|++++++++|.+ ++++++|+++++.+++.+++
T Consensus 21 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l~ 98 (404)
T 1e5e_A 21 QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL 98 (404)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHh
Confidence 5688999999887765544322 1 123567554444 8999999999974 77888888999999999999
Q ss_pred CCCCeEEEcCCCChhHHH----HHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHH
Q 025730 168 DPGDKIVDCPPTFTMYEF----DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWG 243 (249)
Q Consensus 168 ~pGd~Vlv~~P~y~~~~~----~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~ 243 (249)
++||+|++++|+|..+.. .++..|++++.++.+ |+++++++++ .++++|++++||||||.++ +.+.+.+
T Consensus 99 ~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-~~t~~v~l~~p~NptG~v~-~l~~i~~ 171 (404)
T 1e5e_A 99 KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-----IPGEVKKHMK-PNTKIVYFETPANPTLKII-DMERVCK 171 (404)
T ss_dssp CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCC-TTEEEEEEESSCTTTCCCC-CHHHHHH
T ss_pred CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcC-CCCcEEEEECCCCCCCccc-CHHHHHH
Confidence 999999999999998877 678899999999874 7889999998 6899999999999999996 5677888
Q ss_pred Hhhh-hC
Q 025730 244 ISSE-HN 249 (249)
Q Consensus 244 i~~~-~~ 249 (249)
+|++ +|
T Consensus 172 la~~~~~ 178 (404)
T 1e5e_A 172 DAHSQEG 178 (404)
T ss_dssp HHHTSTT
T ss_pred HHHhhcC
Confidence 8988 75
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-18 Score=149.28 Aligned_cols=141 Identities=18% Similarity=0.161 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHh-ccCCCCCCC--c----ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCC-----------
Q 025730 108 GPPPEVREALGQ-LKFPYIYPD--P----ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDP----------- 169 (249)
Q Consensus 108 ~~p~~v~~al~~-~~~~~~Yp~--~----g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~p----------- 169 (249)
++++.+.+++.+ +.....++. + ...++++.+++++++++++|++|+|+++++.+++.++..+
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 455678888876 432211111 1 1346888999999999999999999999999999998776
Q ss_pred --CCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh
Q 025730 170 --GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 170 --Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
||+|+++.|+|..+...++..|++++.++.++++.+|++++++++++.++++|++++|+||||.+. +.+.+.++|++
T Consensus 121 ~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~ 199 (397)
T 3f9t_A 121 NEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTID-NIEELSKIAKE 199 (397)
T ss_dssp CSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBC-CHHHHHHHHHH
T ss_pred CCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCC-CHHHHHHHHHH
Confidence 999999999999999999999999999998888899999999999833899999999999999995 56668889998
Q ss_pred hC
Q 025730 248 HN 249 (249)
Q Consensus 248 ~~ 249 (249)
||
T Consensus 200 ~~ 201 (397)
T 3f9t_A 200 NN 201 (397)
T ss_dssp HT
T ss_pred hC
Confidence 86
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-18 Score=149.22 Aligned_cols=153 Identities=15% Similarity=0.169 Sum_probs=122.3
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCC-CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCC
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYP-DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDP 169 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp-~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~p 169 (249)
..+.+|+|+.+ ++.++++.+.+++.+ ... ...|+ +....++++.+++++| .+++|++|+|+++++.+++.+++++
T Consensus 5 ~~~~~id~~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~~~~ 82 (356)
T 1v72_A 5 SRPPALGFSSD-NIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAMTPP 82 (356)
T ss_dssp -CCCCCBCSCG-GGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTSCCT
T ss_pred CCCceEeeccC-CccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHhcCC
Confidence 34568999986 456788999999986 322 34564 3456789999999999 4445999999999999999999999
Q ss_pred CCeEEEcCCCChhHHHH--HHHC--CCEEEEecCCCCCCCCHHHHHH-hhccC------CceEEEEcCCCCccccCCChH
Q 025730 170 GDKIVDCPPTFTMYEFD--AAVN--GAAVVKVPRKSDFSLNVELIAD-AVERE------KPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 170 Gd~Vlv~~P~y~~~~~~--~~~~--G~~v~~v~~~~~~~id~e~l~~-~i~~~------~~k~i~l~~PnNPTG~~~~~~ 238 (249)
||+|+++.|+|..+... +... |++++.++.+ ++.+|++++++ ++++. ++++|++++||| ||.+++.+
T Consensus 83 gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~ 160 (356)
T 1v72_A 83 WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLD 160 (356)
T ss_dssp TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHH
T ss_pred CCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHH
Confidence 99999999999765443 5555 9999999974 57899999999 88731 689999999987 99988776
Q ss_pred --HHHHHHhhhhC
Q 025730 239 --SWIWGISSEHN 249 (249)
Q Consensus 239 --e~i~~i~~~~~ 249 (249)
+.+.++|++||
T Consensus 161 ~l~~i~~~~~~~~ 173 (356)
T 1v72_A 161 EIEAIGDVCKSSS 173 (356)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 44778898875
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-18 Score=152.82 Aligned_cols=147 Identities=16% Similarity=0.094 Sum_probs=123.1
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCCCCC--cChHHHHHHHHHHcCCCCCC-EEEeCCHHHHHHHHHHHhcCCCCeEEEcCC
Q 025730 102 ANENPYGPPPEVREALGQLKFPYIYPD--PESRRLRAALAKDSGLESDH-ILVGCGADELIDLIMRCVLDPGDKIVDCPP 178 (249)
Q Consensus 102 ~~~~~~~~p~~v~~al~~~~~~~~Yp~--~g~~~lr~~la~~~~~~~~~-I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P 178 (249)
.+..|.++++.+.+++.+....+.++. ....++++.++++++.+.++ |++++|+++++.+++.+++++||+|+++.|
T Consensus 17 ~~pgp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~ 96 (411)
T 3nnk_A 17 MGPGPINADPRVLRAMSSQLIGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVF 96 (411)
T ss_dssp ESSSCCCCCHHHHHHHTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ecCCCCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecC
Confidence 445678888999999986322222232 23578999999999987765 788999999999999999999999999999
Q ss_pred CChh--HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 179 TFTM--YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 179 ~y~~--~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|.. +...++..|++++.++.+.++.+|++++++++++.++++|++++||||||.+++ .+.+.++|++||
T Consensus 97 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 168 (411)
T 3nnk_A 97 GRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP-LAELGEICRRYD 168 (411)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC-CTTHHHHHHHHT
T ss_pred CchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc-HHHHHHHHHHcC
Confidence 9965 888888999999999988888899999999997448999999999999999965 567788898875
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-18 Score=151.81 Aligned_cols=145 Identities=14% Similarity=0.073 Sum_probs=121.0
Q ss_pred CCCCCCCCHHHHHHHHhccCCCCCCC---cChHHHHHHHHHHcCCCCCCEE-EeCCHHHHHHHHHHHhcCCCCeEEEcCC
Q 025730 103 NENPYGPPPEVREALGQLKFPYIYPD---PESRRLRAALAKDSGLESDHIL-VGCGADELIDLIMRCVLDPGDKIVDCPP 178 (249)
Q Consensus 103 ~~~~~~~p~~v~~al~~~~~~~~Yp~---~g~~~lr~~la~~~~~~~~~I~-vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P 178 (249)
+..|.+.++.+.+++.+... ..|+. ....++++.+++++++++++++ +++|+++++.+++.+++++||+|++++|
T Consensus 16 ~p~p~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~ 94 (416)
T 3isl_A 16 TPGPVEVDPRVLRVMSTPVV-GQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIY 94 (416)
T ss_dssp SSSSCCCCHHHHHHTTSCCC-CTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred cCCCcCcCHHHHHHhcccCC-CCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecC
Confidence 34566678888888876322 23321 2367899999999999887766 8899999999999999999999999999
Q ss_pred CChh--HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 179 TFTM--YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 179 ~y~~--~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|.. +...++..|++++.++.+.++.+|++++++++++.++++|++++||||||.+++ .+.+.++|++||
T Consensus 95 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 166 (416)
T 3isl_A 95 GRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHP-LKAIGEACRTED 166 (416)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC-CHHHHHHHHHTT
T ss_pred CcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecC-HHHHHHHHHHcC
Confidence 9986 777788899999999988888899999999997457899999999999999965 667888899886
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=148.88 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=121.8
Q ss_pred eeccCCCCCCCCCHHHHHHHHhccCCCCCCC---cChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHHHHHhcCCCCeE
Q 025730 98 VKIDANENPYGPPPEVREALGQLKFPYIYPD---PESRRLRAALAKDSGLE-SDHILVGCGADELIDLIMRCVLDPGDKI 173 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~---~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~~~~~~~pGd~V 173 (249)
+.|+. ..+...++.+.+++.+... ..|+. ....++++.+++++|++ +++|++|+|+++++.+++.+++++||+|
T Consensus 21 ~~l~~-~~~~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~v 98 (386)
T 2dr1_A 21 YKLFT-AGPVACFPEVLEIMKVQMF-SHRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKV 98 (386)
T ss_dssp SEECC-SSSCCCCHHHHHHTTSCCC-CTTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEE
T ss_pred ceeec-CCCcCCcHHHHHHHhcccc-cccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeE
Confidence 34444 3345677889898876322 24532 23466788888888987 6789999999999999999999999999
Q ss_pred EEcCCCChh--HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc-CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 174 VDCPPTFTM--YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 174 lv~~P~y~~--~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++++|+|.. |...++..|++++.++.+.++.+|++++++++++ .++++|++++|+||||.+. +.+.+.++|++||
T Consensus 99 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~ 176 (386)
T 2dr1_A 99 LVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLN-PLPELAKVAKEHD 176 (386)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC-CHHHHHHHHHHTT
T ss_pred EEEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhC-CHHHHHHHHHHcC
Confidence 999999987 8888889999999999877788999999999952 5899999999999999995 4677788898875
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.75 E-value=9e-18 Score=149.27 Aligned_cols=146 Identities=8% Similarity=0.029 Sum_probs=117.4
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCCCCC--cChHHHHHHHHHHcCCCCC-C-EEEeCCHHHHHHHHHHHhcCCCCeEEEcC
Q 025730 102 ANENPYGPPPEVREALGQLKFPYIYPD--PESRRLRAALAKDSGLESD-H-ILVGCGADELIDLIMRCVLDPGDKIVDCP 177 (249)
Q Consensus 102 ~~~~~~~~p~~v~~al~~~~~~~~Yp~--~g~~~lr~~la~~~~~~~~-~-I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~ 177 (249)
.+..|.++|+.+.+++.+....+.|+. ....++++.+++++|++.+ + +++|+|+++++.+++++++++||+|+++.
T Consensus 23 ~~pgp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~ 102 (376)
T 3f0h_A 23 FTVGPVMSSEEVRAIGAEQVPYFRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVID 102 (376)
T ss_dssp CSSSSCCCCHHHHHHHTSCCCCCSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred ecCCCCCCcHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEe
Confidence 345567788999999987222233332 2356788999999998653 4 55599999999999999999999999999
Q ss_pred CCChhHH--HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 178 PTFTMYE--FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 178 P~y~~~~--~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+|..+. ..+...|++++.++.+.++.+|+++++++++ .++++|++++||||||.+++ .+.+.++|++||
T Consensus 103 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~-~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 174 (376)
T 3f0h_A 103 GGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDN-QNFTGLLVNVDETSTAVLYD-TMMIGEFCKKNN 174 (376)
T ss_dssp SSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTT-SCCCEEEEESEETTTTEECC-HHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhc-cCceEEEEecccCCcceecC-HHHHHHHHHHcC
Confidence 8765433 3566789999999988888999999999886 78999999999999999975 777888999886
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=149.20 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=119.7
Q ss_pred CCCeeeccCCCC-CCCCCHHHHHHHHh-ccC------CCCCCC---cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANEN-PYGPPPEVREALGQ-LKF------PYIYPD---PESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~-~~~~p~~v~~al~~-~~~------~~~Yp~---~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
+...|||+.|++ .+++++.+.+++.+ +.. ..+|+. .+..+|++++++++|++ +.|++++| ++++..+
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~-~~i~~~sG-t~a~~~~ 115 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYS-RALLFISG-FAANQAV 115 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS-EEEEESCH-HHHHHHH
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-cEEEeCCc-HHHHHHH
Confidence 356899999986 55678888888765 221 134543 45789999999999985 55666666 8999999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC--CceEEEEcCCCCccccCCChHHH
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE--KPKCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~--~~k~i~l~~PnNPTG~~~~~~e~ 240 (249)
+++++++||.|+++.|+|..+...++..|++++.+|. .|++++++++++. ++++|++++||||||.+++ .+.
T Consensus 116 ~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~-l~~ 189 (384)
T 1bs0_A 116 IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP-LAE 189 (384)
T ss_dssp HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC-HHH
T ss_pred HHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC-HHH
Confidence 9999999999999999999999999999999999984 4799999998743 3789999999999999976 567
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.++|++||
T Consensus 190 i~~l~~~~~ 198 (384)
T 1bs0_A 190 IQQVTQQHN 198 (384)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 778898875
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=148.10 Aligned_cols=148 Identities=13% Similarity=0.031 Sum_probs=120.7
Q ss_pred CCCeeeccCCCC-CCCCCHHHHHHHHh-cc---CC-CCCCC-cC----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANEN-PYGPPPEVREALGQ-LK---FP-YIYPD-PE----SRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~-~~~~p~~v~~al~~-~~---~~-~~Yp~-~g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
+.++|+|+.|++ .+++++.+.+++.+ +. .. ..|+. .| ..++++.+++++|. +++++|+|+++++.++
T Consensus 42 g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~v~~~~ggt~a~~~~ 119 (398)
T 3a2b_A 42 GRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK--EAAILFSTGFQSNLGP 119 (398)
T ss_dssp TEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHH
T ss_pred CceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHH
Confidence 356899999988 66678888888765 21 11 22322 23 35677777777785 5899999999999999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC---CceEEEEcCCCCccccCCChHH
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE---KPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~---~~k~i~l~~PnNPTG~~~~~~e 239 (249)
+++++++||.|+++.|+|..+...++..|++++.++. +|++++++++++. ++++|++++|+||||.+++ .+
T Consensus 120 ~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~-~~ 193 (398)
T 3a2b_A 120 LSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN-LP 193 (398)
T ss_dssp HHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC-HH
T ss_pred HHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC-HH
Confidence 9999999999999999999999999999999999985 5899999998742 7899999999999999964 67
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+.++|++||
T Consensus 194 ~l~~~~~~~~ 203 (398)
T 3a2b_A 194 ELTSIANEFD 203 (398)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 7778888875
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-18 Score=151.39 Aligned_cols=147 Identities=13% Similarity=0.121 Sum_probs=121.3
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCCCCC--cChHHHHHHHHHHcCCCCC-CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCC
Q 025730 102 ANENPYGPPPEVREALGQLKFPYIYPD--PESRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPP 178 (249)
Q Consensus 102 ~~~~~~~~p~~v~~al~~~~~~~~Yp~--~g~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P 178 (249)
.+..|.++++.+.+++.+....+.|+. ....++++.++++++.+.+ +|++|+|+++++..++++++++||+|+++.+
T Consensus 27 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~ 106 (393)
T 3kgw_A 27 LGPGPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTN 106 (393)
T ss_dssp CSSSCCCCCHHHHHHTTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEES
T ss_pred ccCCCCCCCHHHHHHhcccccCcccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeC
Confidence 445677888999999876222233332 2357899999999998655 5999999999999999999999999999998
Q ss_pred CCh--hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 179 TFT--MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 179 ~y~--~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|. .+...++..|++++.++.+.++.+|++++++++++.++++|++++||||||.+++ .+.+.++|++||
T Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 178 (393)
T 3kgw_A 107 GIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP-LDGFGELCHRYQ 178 (393)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC-CTTHHHHHHHTT
T ss_pred CchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc-HHHHHHHHHHcC
Confidence 874 3467778899999999987778899999999998448999999999999999975 567788899885
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-18 Score=154.75 Aligned_cols=134 Identities=18% Similarity=0.255 Sum_probs=110.1
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHh-c--c---CCCCCCC-cCh-----HHHHHHHHHHcC-----CCC-CCEEEeCC
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQ-L--K---FPYIYPD-PES-----RRLRAALAKDSG-----LES-DHILVGCG 154 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~-~--~---~~~~Yp~-~g~-----~~lr~~la~~~~-----~~~-~~I~vt~G 154 (249)
...++|+|+.|++++++|+.+.+++.. . . ....|++ .|. .+||+++|++++ +.+ ++|++|+|
T Consensus 20 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~G 99 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTG 99 (391)
T ss_dssp TTTSCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEEH
T ss_pred CCCCeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeCC
Confidence 346789999999998877777777633 1 1 2356865 466 999999999986 245 69999999
Q ss_pred HHHHHHHHHHHhcCCCC----eEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCc
Q 025730 155 ADELIDLIMRCVLDPGD----KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNP 230 (249)
Q Consensus 155 a~~~l~~~~~~~~~pGd----~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNP 230 (249)
++++|.+++++++++|| +|++++|+|..|...++..|++++.++.+.+ +++ ..++|+|+++|||||
T Consensus 100 ~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~l~---------~~~~k~v~l~~p~NP 169 (391)
T 3bwn_A 100 STQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAW-GFD---------KKGPYIELVTSPNNP 169 (391)
T ss_dssp HHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEEST-TCC---------CCSCEEEEEESSCTT
T ss_pred hHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHH-HcC---------CCCCEEEEECCCCCC
Confidence 99999999999999999 9999999999999999999999988885432 222 157899999999999
Q ss_pred cccCCC
Q 025730 231 DGRFSW 236 (249)
Q Consensus 231 TG~~~~ 236 (249)
||.+++
T Consensus 170 tG~~~~ 175 (391)
T 3bwn_A 170 DGTIRE 175 (391)
T ss_dssp TCCCCC
T ss_pred CchhHH
Confidence 999985
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=146.43 Aligned_cols=140 Identities=21% Similarity=0.311 Sum_probs=116.5
Q ss_pred CCCCCCC-C---HHHHHHHHh-ccCC-CCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEE
Q 025730 103 NENPYGP-P---PEVREALGQ-LKFP-YIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIV 174 (249)
Q Consensus 103 ~~~~~~~-p---~~v~~al~~-~~~~-~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vl 174 (249)
.+++|++ | +.+.+++.+ +... ..| +..+..+|+++++++++.+ ++|++++| ++++.+++.++ +++||+|+
T Consensus 5 ~~p~f~~~p~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~~~-~~i~~~sG-t~al~~~l~~l~~~~gd~Vi 82 (388)
T 1b9h_A 5 KAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAA-HALAVTNG-THALELALQVMGVGPGTEVI 82 (388)
T ss_dssp CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCS-EEEEESCH-HHHHHHHHHHTTCCTTCEEE
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhCCC-eEEEeCCH-HHHHHHHHHHcCCCCcCEEE
Confidence 4667776 6 788888765 4332 234 5667899999999999975 67777777 89999999998 89999999
Q ss_pred EcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 175 DCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 175 v~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++.|+|..+...++..|++++.++.+. ++.+|+++++++++ .++++|+ |+||||.+. +.+.+.++|++||
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~-~~~~~v~---~~n~tG~~~-~l~~i~~la~~~~ 153 (388)
T 1b9h_A 83 VPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVT-PRTKVIM---PVHMAGLMA-DMDALAKISADTG 153 (388)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC-TTEEEEC---CBCGGGCCC-CHHHHHHHHHHHT
T ss_pred ECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcC-cCceEEE---EeCCccCcC-CHHHHHHHHHHcC
Confidence 999999999999999999999999764 48899999999997 6788877 999999994 6677888898875
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=146.96 Aligned_cols=143 Identities=14% Similarity=0.078 Sum_probs=118.8
Q ss_pred CCCCCCCCHHHHHHHHh-ccCCCCCCC--cChHHHHHHHHHHcCCC--CCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcC
Q 025730 103 NENPYGPPPEVREALGQ-LKFPYIYPD--PESRRLRAALAKDSGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCP 177 (249)
Q Consensus 103 ~~~~~~~p~~v~~al~~-~~~~~~Yp~--~g~~~lr~~la~~~~~~--~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~ 177 (249)
+..++++++.+.+++.+ +.. +.|+. ....++++++++++|++ +++|++|+|+++++.+++..+++ |+|++++
T Consensus 5 ~~gp~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~ 81 (353)
T 2yrr_A 5 TPGPTPIPERVQKALLRPMRG-HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLV 81 (353)
T ss_dssp SSSSCCCCHHHHGGGGSCCCC-TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEE
T ss_pred CCCCCCCCHHHHHHHhccccc-ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEc
Confidence 44567788999999887 333 45553 34788999999999985 67899999999999999998876 8999999
Q ss_pred CCChhH--HHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 178 PTFTMY--EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 178 P~y~~~--~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+|..+ ...++..|++++.++.++++.+|++++++++++.++++|++++|+||||.+++ .+.+.++|++||
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~-~~~i~~l~~~~~ 154 (353)
T 2yrr_A 82 NGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP-AEAIGALAKEAG 154 (353)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC-HHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC-HHHHHHHHHHcC
Confidence 998864 45567789999999987778899999999997337999999999999999965 567778898875
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.5e-17 Score=146.91 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=121.8
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhccCCCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEE
Q 025730 96 DIVKIDANENPYGPPPEVREALGQLKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIV 174 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vl 174 (249)
..+|+..+.++.+.++.+.+++... ...| ++.+..+|+++++++++. +++++|+|+++++.+++.+++++|| +
T Consensus 43 ~ylD~~~~~~~~~~~~~~~~a~~~~--~~~y~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~al~~l~~~gd--i 116 (456)
T 2ez2_A 43 IYIDLLTDSGTNAMSDKQWAGMMMG--DEAYAGSENFYHLERTVQELFGF--KHIVPTHQGRGAENLLSQLAIKPGQ--Y 116 (456)
T ss_dssp CSEECSCSSSCCCCCHHHHHHHTTC--CCCSSSCHHHHHHHHHHHHHHCC--SEEEEESSHHHHHHHHHHHHCCTTC--E
T ss_pred ceeeeccccCCccCCHHHHHHhhcc--hhhcccChhHHHHHHHHHHHhCC--CcEEEeCCcHHHHHHHHHHhCCCCC--E
Confidence 3578888777777788888888742 2356 456788999999999985 4899999999999999999999999 7
Q ss_pred EcCCCC-hhHHHHHHHCCCEEEEecCCC----------CCCCCHHHHHHhhccCCc----eEEEEcCCCC-ccccCCChH
Q 025730 175 DCPPTF-TMYEFDAAVNGAAVVKVPRKS----------DFSLNVELIADAVEREKP----KCIFLTSPNN-PDGRFSWTS 238 (249)
Q Consensus 175 v~~P~y-~~~~~~~~~~G~~v~~v~~~~----------~~~id~e~l~~~i~~~~~----k~i~l~~PnN-PTG~~~~~~ 238 (249)
++.|+| ..|...+...|++++.++.+. ++.+|+++|++++++ ++ ++|++++||| |||.+++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~-~t~~~~~~v~l~~p~n~ptG~~~~~~ 195 (456)
T 2ez2_A 117 VAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDE-KGAENIAYICLAVTVNLAGGQPVSMA 195 (456)
T ss_dssp EEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHH-HCGGGEEEEEEESSBTTTTSBCCCHH
T ss_pred eccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHh-ccccceeEEEEeccCCCCCCccCCHH
Confidence 889999 888888889999999998652 368899999999973 34 8999999999 999987754
Q ss_pred --HHHHHHhhhhC
Q 025730 239 --SWIWGISSEHN 249 (249)
Q Consensus 239 --e~i~~i~~~~~ 249 (249)
+.+.++|++||
T Consensus 196 ~l~~i~~la~~~~ 208 (456)
T 2ez2_A 196 NMRAVRELTEAHG 208 (456)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 55788999886
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-17 Score=145.43 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=117.8
Q ss_pred CCCeeeccCCCCCCC--CCHHHHHHHHh-ccC-C-----CCCC---CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 94 PEDIVKIDANENPYG--PPPEVREALGQ-LKF-P-----YIYP---DPESRRLRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~--~p~~v~~al~~-~~~-~-----~~Yp---~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
+...|||+.+ ++++ +++.+.+++.+ +.. . ..|+ ..+..+|++++++++|++ ++|++++| ++++..
T Consensus 44 g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~-~~i~~~sG-s~a~~~ 120 (401)
T 1fc4_A 44 GSHVINFCAN-NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME-DAILYSSC-FDANGG 120 (401)
T ss_dssp SCEEEECCCS-CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS-EEEEESCH-HHHHHT
T ss_pred CccEEEeecc-CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCC-cEEEeCCh-HHHHHH
Confidence 4568999999 5676 48888888865 321 2 1332 345789999999999987 66766666 668888
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC-----CceEEEEcCCCCccccCCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~ 236 (249)
++++++++||.|+++.|+|..+...++..|++++.++. .|++++++++++. ++++|++++||||||.+++
T Consensus 121 ~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~ 195 (401)
T 1fc4_A 121 LFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN 195 (401)
T ss_dssp THHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC
T ss_pred HHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC
Confidence 99999999999999999998877788889999999973 4789999888631 7899999999999999976
Q ss_pred hHHHHHHHhhhhC
Q 025730 237 TSSWIWGISSEHN 249 (249)
Q Consensus 237 ~~e~i~~i~~~~~ 249 (249)
.+.+.++|++||
T Consensus 196 -~~~i~~l~~~~~ 207 (401)
T 1fc4_A 196 -LKGVCDLADKYD 207 (401)
T ss_dssp -HHHHHHHHHHTT
T ss_pred -HHHHHHHHHHcC
Confidence 677788898875
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=145.36 Aligned_cols=142 Identities=16% Similarity=0.156 Sum_probs=122.8
Q ss_pred eccCCCCCCCCCHHHHHHHHh-ccCCCCCCC--cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEE
Q 025730 99 KIDANENPYGPPPEVREALGQ-LKFPYIYPD--PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVD 175 (249)
Q Consensus 99 ~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~--~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv 175 (249)
+|+.+++++++|+.+.+++.+ +.. ..|+. .+..+|+++++++++. ++|++|+|+++++.+++.++. +||+|++
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~-~~y~~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~l~~l~-~gd~Vlv 95 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDS-QWLSNGGPLVREFEERVAGLAGV--RHAVATCNATAGLQLLAHAAG-LTGEVIM 95 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHH-TCCSSSCHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHHT-CCSEEEE
T ss_pred cccccCCCCCChHHHHHHHHHHHhc-CCcccCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-CCCEEEE
Confidence 688999999999999988876 433 35865 5789999999999985 589999999999999999874 8999999
Q ss_pred cCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 176 CPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 176 ~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++|+|..+...++..|++++.++.+. ++.+|+++++++++ .++++|+++| |||.. .+.+.+..+|+++|
T Consensus 96 ~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-~~~~~v~~~~---~tG~~-~~l~~i~~la~~~~ 165 (424)
T 2po3_A 96 PSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVT-PRTSAVVGVH---LWGRP-CAADQLRKVADEHG 165 (424)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCC-TTEEEEEEEC---GGGCC-CCHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhC-cCCcEEEEEC---CCCCc-CCHHHHHHHHHHcC
Confidence 99999999999999999999999754 67899999999997 6899999864 89997 56677888898875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-17 Score=144.24 Aligned_cols=148 Identities=16% Similarity=0.071 Sum_probs=117.5
Q ss_pred eeccCCCCCCCCCHHHHHHHHhccCCCCCCCc--ChHHHHHHHHHHcCC----CCCCEEEeCCHHHHHHHHHHHhc---C
Q 025730 98 VKIDANENPYGPPPEVREALGQLKFPYIYPDP--ESRRLRAALAKDSGL----ESDHILVGCGADELIDLIMRCVL---D 168 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~--g~~~lr~~la~~~~~----~~~~I~vt~Ga~~~l~~~~~~~~---~ 168 (249)
+.|..+ |...++.+.+++.+....+++|.. ...+++++++++++. ++++|++|+|+++++.+++.++. +
T Consensus 7 ~~~~p~--p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~ 84 (385)
T 2bkw_A 7 TLLIPG--PIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKA 84 (385)
T ss_dssp EECSSS--SCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTC
T ss_pred eeecCC--CcCchHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCC
Confidence 444443 566778998888763222334432 356789999999864 46899999999999999999987 8
Q ss_pred CCCeEEEc-CCCChhH-HHHHHHCCCEEEEecC-CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHh
Q 025730 169 PGDKIVDC-PPTFTMY-EFDAAVNGAAVVKVPR-KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGIS 245 (249)
Q Consensus 169 pGd~Vlv~-~P~y~~~-~~~~~~~G~~v~~v~~-~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~ 245 (249)
+||+|+++ .|+|..+ ...++..|++++.++. +.++.+|++++++++++.++++|++++|+||||.+++ .+.+.++|
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~-l~~i~~~~ 163 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD-LKAISQAI 163 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC-HHHHHHHH
T ss_pred CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC-HHHHHHHH
Confidence 99999888 5566655 3567779999999998 7788899999999997447999999999999999965 56778889
Q ss_pred hhh
Q 025730 246 SEH 248 (249)
Q Consensus 246 ~~~ 248 (249)
++|
T Consensus 164 ~~~ 166 (385)
T 2bkw_A 164 KQT 166 (385)
T ss_dssp HHH
T ss_pred Hhh
Confidence 887
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-17 Score=145.15 Aligned_cols=144 Identities=13% Similarity=0.045 Sum_probs=118.6
Q ss_pred ccCCCCCCCCCHHHHHHHHh-ccCCCCCC-CcChHHHHHHH-HHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEE
Q 025730 100 IDANENPYGPPPEVREALGQ-LKFPYIYP-DPESRRLRAAL-AKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVD 175 (249)
Q Consensus 100 L~~~~~~~~~p~~v~~al~~-~~~~~~Yp-~~g~~~lr~~l-a~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv 175 (249)
+..+++++++++.+.+++.+ +..+..++ .+...+|++++ |+++| ..+++++++|+++++.+++.++ +++||+|++
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~ 83 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDASHIYTNYGPINQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKKRKKGKYALM 83 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHHTCCSSSCHHHHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHSCTTCCEEEE
T ss_pred eeccCCCCCCcHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEE
Confidence 44568899999988888876 43333223 45578999999 99999 3567899999999999999998 899999999
Q ss_pred cCCCChhHHHHHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCC--ceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 176 CPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREK--PKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 176 ~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~--~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.|+|..+...+...|++++.++.+ +++.+|++++++++.+.+ +|+|+ |+||+|... +.+.+.++|+ ||
T Consensus 84 ~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~-~~~~i~~la~-~~ 155 (377)
T 3ju7_A 84 PSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWM-NLEEYEELEK-KG 155 (377)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCC-CCHHHHHHHH-TT
T ss_pred CCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCcc-CHHHHHHHHh-cC
Confidence 9999999999999999999999975 578999999999983245 88887 788999984 5667778887 65
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-17 Score=145.26 Aligned_cols=144 Identities=18% Similarity=0.267 Sum_probs=121.7
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeE
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKI 173 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~V 173 (249)
++++|+.+.+++.. +.+++.+ +.....|++++..+|+++++++++.+ ++++++|+++++.+++.++ +++||+|
T Consensus 7 ~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~~~gd~v 81 (374)
T 3uwc_A 7 PYSYLERQFADIEP---YLNDLREFIKTADFTLGAELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNIGAGDEV 81 (374)
T ss_dssp CSCCHHHHTSSCHH---HHHHHHHHHHHTCCSSCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred eeeccccCCCCchH---HHHHHHHHHHcCCcccChhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCCCCCEE
Confidence 45788888887743 7777765 33323336677899999999999965 7889999999999999999 9999999
Q ss_pred EEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 174 VDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 174 lv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+++.|+|..+...++..|++++.++.++++.+|+++++++++ .++++|+ |+||||.+. +.+.+.++|++||
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~---~~n~~G~~~-~~~~i~~~~~~~~ 152 (374)
T 3uwc_A 82 ITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAIT-DKTKAIM---PVHYTGNIA-DMPALAKIAKKHN 152 (374)
T ss_dssp EEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCC-TTEEEEC---CBCGGGCCC-CHHHHHHHHHHTT
T ss_pred EECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCC-CCceEEE---EeCCcCCcC-CHHHHHHHHHHcC
Confidence 999999999999999999999999987788999999999998 5788887 999999984 5677888899875
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=142.79 Aligned_cols=147 Identities=15% Similarity=0.145 Sum_probs=115.7
Q ss_pred CCCeeeccCCCCCCC--CCHHHHHHHHh-cc---C---CCCCC---CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 94 PEDIVKIDANENPYG--PPPEVREALGQ-LK---F---PYIYP---DPESRRLRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~--~p~~v~~al~~-~~---~---~~~Yp---~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
+.++|||+.| ++++ +++.+.+++.+ +. . ..+|+ .....++++.++++++.+ ++|++++| ++++..
T Consensus 42 g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~-~~i~~~sG-t~a~~~ 118 (399)
T 3tqx_A 42 EKEVLNFCAN-NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTD-DTILYSSC-FDANGG 118 (399)
T ss_dssp TEEEEECSSC-CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCS-EEEEESCH-HHHHHT
T ss_pred CeeEEEeecc-CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCC-cEEEECch-HHHHHH
Confidence 3468999999 4443 57888887764 21 1 12332 123689999999999975 56666665 679999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC-----CceEEEEcCCCCccccCCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~ 236 (249)
++.+++++||.|+++.|+|..+...++..|++++.++. .|++++++++++. ++++|++++|+||||.+++
T Consensus 119 ~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~ 193 (399)
T 3tqx_A 119 LFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD 193 (399)
T ss_dssp THHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC
T ss_pred HHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC
Confidence 99999999999999999999999999999999999985 3667888877631 7999999999999999976
Q ss_pred hHHHHHHHhhhhC
Q 025730 237 TSSWIWGISSEHN 249 (249)
Q Consensus 237 ~~e~i~~i~~~~~ 249 (249)
.+.+.++|++||
T Consensus 194 -l~~i~~l~~~~~ 205 (399)
T 3tqx_A 194 -LKSICDLADKYN 205 (399)
T ss_dssp -HHHHHHHHHHTT
T ss_pred -HHHHHHHHHHcC
Confidence 667788898875
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=143.13 Aligned_cols=145 Identities=18% Similarity=0.272 Sum_probs=121.2
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCC
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGD 171 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd 171 (249)
.++|||+.++++++ +.+.+++.+ +.. ..| +..+..+++++++++++.+ ++++++|+++++.+++.++ +++||
T Consensus 30 ~~~id~~~~~~~~~--~~v~~a~~~~~~~-~~y~~~~~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~~~~gd 104 (399)
T 2oga_A 30 VPFLDLKAAYEELR--AETDAAIARVLDS-GRYLLGPELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLGIGPGD 104 (399)
T ss_dssp BCSCCHHHHHHHTH--HHHHHHHHHHHHH-TCCSSSHHHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTTCCTTC
T ss_pred CcccccCcCCCCCC--HHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhCCCCcC
Confidence 35689999888775 788888876 332 356 4456889999999999965 6777788899999999998 89999
Q ss_pred eEEEcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 172 KIVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 172 ~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|+++.|+|..+...++..|++++.++.+. ++.+|+++++++++ .++++|+ |+||||.+. +.+.+.++|+++|
T Consensus 105 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-~~~~~v~---~~n~tG~~~-~l~~i~~l~~~~~ 178 (399)
T 2oga_A 105 EVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAIT-PRTRALL---PVHLYGHPA-DMDALRELADRHG 178 (399)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCC-TTEEEEC---CBCGGGCCC-CHHHHHHHHHHHT
T ss_pred EEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcC-CCCeEEE---EeCCcCCcc-CHHHHHHHHHHcC
Confidence 999999999999999999999999999754 57899999999998 5788887 688999985 5677788898875
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=140.79 Aligned_cols=145 Identities=17% Similarity=0.261 Sum_probs=116.8
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCC--CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCC
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYP--DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPG 170 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp--~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pG 170 (249)
.+++.|..+.+.++ +.+.+++.+ +.. ..|+ ..+..+|+++++++++.+ ++++++|+++++.+++.++ +++|
T Consensus 22 ~~~~~l~~~~p~~~--~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~~~~g 96 (391)
T 3dr4_A 22 SDLPRISVAAPRLD--GNERDYVLECMDT-TWISSVGRFIVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMGIGPG 96 (391)
T ss_dssp ------CCCCCCCC--SSHHHHHHHHHHH-TCCSSCSHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHTCCTT
T ss_pred CCCceeccCCCCCC--HHHHHHHHHHHHc-CCccCCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCCCc
Confidence 46788888888764 566676665 322 2343 567899999999999965 7888899999999999999 9999
Q ss_pred CeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 171 DKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 171 d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+|+++.|+|..+...++..|++++.++.+ +++.+|+++++++++ .++++|+ |+||||.. .+.+.+.++|+++|
T Consensus 97 d~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~---~~n~tG~~-~~~~~i~~l~~~~~ 171 (391)
T 3dr4_A 97 DEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALIT-PRTKAIM---PVHLYGQI-CDMDPILEVARRHN 171 (391)
T ss_dssp CEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCC-TTEEEEC---CBCGGGCC-CCHHHHHHHHHHTT
T ss_pred CEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcC-CCceEEE---EECCCCCh-hhHHHHHHHHHHcC
Confidence 999999999999999999999999999976 678999999999998 6888888 67899998 46677888898875
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=137.39 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=115.0
Q ss_pred CCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh---cCCCCeEEEcCCCChhHH
Q 025730 109 PPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV---LDPGDKIVDCPPTFTMYE 184 (249)
Q Consensus 109 ~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~---~~pGd~Vlv~~P~y~~~~ 184 (249)
+++.+.+++.+ +.....+|.....++++++++++|.+ ++++|+|+++++.+++.++ +++||+|+++.|+|..+.
T Consensus 11 ~~~~v~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~ 88 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQLTQGKRSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATA 88 (375)
T ss_dssp CCHHHHHHHHHHHTSSCCSSSHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHH
T ss_pred CCHHHHHHHHHHHHcCcccCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHH
Confidence 56788888876 44333346566789999999999975 8999999999999999999 899999999999999999
Q ss_pred HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 185 FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 185 ~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
..++..|++++.++.+.++.+|+++++++++ +++++|++++| ||.+. +.+.+.++|++||
T Consensus 89 ~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~---tG~~~-~l~~i~~l~~~~~ 148 (375)
T 2fnu_A 89 NMLLESGYTPVFAGIKNDGNIDELALEKLIN-ERTKAIVSVDY---AGKSV-EVESVQKLCKKHS 148 (375)
T ss_dssp HHHHHTTCEEEECCBCTTSSBCGGGSGGGCC-TTEEEEEEECG---GGCCC-CHHHHHHHHHHHT
T ss_pred HHHHHCCCEEEEeccCCCCCCCHHHHHhhcC-cCceEEEEeCC---cCCcc-CHHHHHHHHHHcC
Confidence 9999999999999976666899999999997 68999988877 99985 5677888898875
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=136.07 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=117.2
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeE
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKI 173 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~V 173 (249)
++|+|+. +.+ |+.+.+++.+ +.....++..+..+++++++++++. +++++++|+++++.+++.++ +++||+|
T Consensus 9 ~~i~~~~--p~~--~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~al~~~~~~~~~~~gd~V 82 (393)
T 1mdo_A 9 DFLPFSR--PAM--GAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGN--QYAVAVSSATAGMHIALMALGIGEGDEV 82 (393)
T ss_dssp CCBCSCC--CCC--CHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred cccccCC--CCC--CHHHHHHHHHHHhcCCcCCChHHHHHHHHHHHHhCC--CcEEEecChHHHHHHHHHHcCCCCCCEE
Confidence 4678876 443 4677777765 3332223556788999999999996 48999999999999999999 8999999
Q ss_pred EEcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 174 VDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 174 lv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+++.|+|..+...++..|++++.++.+. ++.+|+++++++++ .++++|+++ ||||.+. +.+.+.++|+++|
T Consensus 83 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-~~~~~v~~~---~~~G~~~-~~~~i~~l~~~~~ 154 (393)
T 1mdo_A 83 ITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAIT-PQTKAIIPV---HYAGAPA-DLDAIYALGERYG 154 (393)
T ss_dssp EEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC-TTEEEECCB---CGGGCCC-CHHHHHHHHHHHT
T ss_pred EeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcC-CCceEEEEe---CCCCCcC-CHHHHHHHHHHcC
Confidence 9999999999999999999999999654 37799999999998 588999875 4899984 5677788888875
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=140.65 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=111.2
Q ss_pred eccCCCCCCCCCHH----HHHHHHhc---cCCCC---CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcC
Q 025730 99 KIDANENPYGPPPE----VREALGQL---KFPYI---YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLD 168 (249)
Q Consensus 99 ~L~~~~~~~~~p~~----v~~al~~~---~~~~~---Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~ 168 (249)
.++.+++++.+++. +.+++... ...+. |+++...++++.+++++|.+ ++++++++++++.+++.++++
T Consensus 24 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~~ 101 (398)
T 2rfv_A 24 TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLCQ 101 (398)
T ss_dssp TCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCC
T ss_pred CCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhC
Confidence 57778888776654 33443311 11223 34556789999999999975 455555566999999999999
Q ss_pred CCCeEEEcCCCChhHHHHH----HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHH
Q 025730 169 PGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGI 244 (249)
Q Consensus 169 pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i 244 (249)
+||+|+++.|+|..+...+ +..|.+++.++.+ |+++++++++ +++++|++++|+||||.++ +.+.+.++
T Consensus 102 ~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-~~~~~v~~~~~~nptG~~~-~l~~i~~l 174 (398)
T 2rfv_A 102 QGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMR-PETKVVYIETPANPTLSLV-DIETVAGI 174 (398)
T ss_dssp TTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCC-TTEEEEEEESSBTTTTBCC-CHHHHHHH
T ss_pred CCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcC-CCCeEEEEECCCCCCCccc-CHHHHHHH
Confidence 9999999999999877665 7789999999863 8999999998 6899999999999999996 46777888
Q ss_pred hhhhC
Q 025730 245 SSEHN 249 (249)
Q Consensus 245 ~~~~~ 249 (249)
|++||
T Consensus 175 ~~~~~ 179 (398)
T 2rfv_A 175 AHQQG 179 (398)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 99875
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-16 Score=139.39 Aligned_cols=147 Identities=20% Similarity=0.168 Sum_probs=115.2
Q ss_pred CCeeeccCCCC-CCCCCHHHHHHHHh-ccC--------CCCCCC-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANEN-PYGPPPEVREALGQ-LKF--------PYIYPD-PESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~~-~~~~p~~v~~al~~-~~~--------~~~Yp~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+++++..|++ .++.++.+.+++.+ +.. ...|+. .+..++|++++++++. +++|++++|++ ++..++
T Consensus 46 ~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~~sG~~-a~~~~~ 123 (401)
T 2bwn_A 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAALVFSSAYN-ANDATL 123 (401)
T ss_dssp EEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEEEESCHHH-HHHHHH
T ss_pred CcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEEEECCcHH-HHHHHH
Confidence 34688888776 56667788888765 211 123443 3578999999999996 57888888877 666666
Q ss_pred HHhc--CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc---CCceEEEEcCCCCccccCCChH
Q 025730 164 RCVL--DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 164 ~~~~--~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
..+. .+||+|+++.|+|..+...++..|++++.++.+ |++++++.++. .++++|++++|+||||.+++ .
T Consensus 124 ~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~-l 197 (401)
T 2bwn_A 124 STLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP-I 197 (401)
T ss_dssp HHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC-H
T ss_pred HHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC-H
Confidence 6543 599999999999999988888999999999864 78888888753 47899999999999999965 6
Q ss_pred HHHHHHhhhhC
Q 025730 239 SWIWGISSEHN 249 (249)
Q Consensus 239 e~i~~i~~~~~ 249 (249)
+.+.++|++||
T Consensus 198 ~~i~~l~~~~~ 208 (401)
T 2bwn_A 198 KEICDIAEEFG 208 (401)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 77788898875
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=140.11 Aligned_cols=149 Identities=13% Similarity=0.188 Sum_probs=115.3
Q ss_pred CCCeeeccCCC--CCCC-CCHHHHHHHHh-cc----CCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 94 PEDIVKIDANE--NPYG-PPPEVREALGQ-LK----FPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 94 ~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~----~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
+...+||+.+. ++++ +++.+.+++.+ +. ....|+..+..+|++++++++|+ +++|++|+|+++++.+++..
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~-~~~v~~~~g~t~a~~~~~~~ 105 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWT-EGKVFFANSGTESVEAAIKL 105 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSS-CEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCC-CCeEEEeCchHHHHHHHHHH
Confidence 34678998886 4677 78888888865 22 12467776788999999999998 48999999999999999875
Q ss_pred ---hc---CCC-CeEEEcCCCChhHHHHHHHCCCE-------------EEEecCCCCCCCCHHHHHHhhccCCceEEEEc
Q 025730 166 ---VL---DPG-DKIVDCPPTFTMYEFDAAVNGAA-------------VVKVPRKSDFSLNVELIADAVEREKPKCIFLT 225 (249)
Q Consensus 166 ---~~---~pG-d~Vlv~~P~y~~~~~~~~~~G~~-------------v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~ 225 (249)
+. +|| |+|++++|+|..+...+...+.. +..++. .|+++++++++ +++++|+++
T Consensus 106 ~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~-~~~~~v~~~ 179 (375)
T 2eh6_A 106 ARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLD-EETAGIIIE 179 (375)
T ss_dssp HHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCC-TTEEEEEEC
T ss_pred HHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhc-CCeEEEEEe
Confidence 35 788 99999999998776655443322 333332 58999999998 689999999
Q ss_pred CCCCccccCCC-h--HHHHHHHhhhhC
Q 025730 226 SPNNPDGRFSW-T--SSWIWGISSEHN 249 (249)
Q Consensus 226 ~PnNPTG~~~~-~--~e~i~~i~~~~~ 249 (249)
+||||||.+++ . .+.+.++|++||
T Consensus 180 ~~~~~tG~~~~~~~~l~~i~~~~~~~~ 206 (375)
T 2eh6_A 180 VIQGEGGVNEASEDFLSKLQEICKEKD 206 (375)
T ss_dssp SEETTTTSEECCHHHHHHHHHHHHHHT
T ss_pred CccCCCCCcCCCHHHHHHHHHHHHHhC
Confidence 99999999855 3 245777888875
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-16 Score=143.65 Aligned_cols=124 Identities=13% Similarity=0.183 Sum_probs=104.3
Q ss_pred CCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcC----CCCe---EEEcCCCChhHHHHHHHCCCEEE
Q 025730 124 YIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLD----PGDK---IVDCPPTFTMYEFDAAVNGAAVV 195 (249)
Q Consensus 124 ~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~----pGd~---Vlv~~P~y~~~~~~~~~~G~~v~ 195 (249)
..| +..+..+|+++++++++. ++|++|+|+++++.+++.++++ +||+ |+++.+.|..+...+...|++++
T Consensus 70 ~~y~~~~~~~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~ 147 (467)
T 1ax4_A 70 EAYAGSRNYYDLKDKAKELFNY--DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAI 147 (467)
T ss_dssp CCSSSCHHHHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEE
T ss_pred cccccCccHHHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHhccCCcee
Confidence 356 445788999999999985 6899999999999999999988 9999 99997777888888888999998
Q ss_pred EecCC----------CCCCCCHHHHHHhhcc---CCceEEEEcCCCCcc-ccCCChH--HHHHHHhhhhC
Q 025730 196 KVPRK----------SDFSLNVELIADAVER---EKPKCIFLTSPNNPD-GRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 196 ~v~~~----------~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPT-G~~~~~~--e~i~~i~~~~~ 249 (249)
.++.. .++.+|+++|++++++ .++++|++++||||| |.+++.+ +.+.++|++||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~g 217 (467)
T 1ax4_A 148 NIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217 (467)
T ss_dssp ECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred cccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcC
Confidence 87632 1356899999999974 268999999999999 8887766 45888999986
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=136.65 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=101.8
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHH----CCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV----NGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~----~G~~v~~v~~ 199 (249)
.+|+++...+|++.+++++|. +++++++|+++++.+++++++++||+|++++|+|..+...++. .|++++.++.
T Consensus 76 ~r~~~p~~~~l~~~la~~~g~--~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 153 (414)
T 3ndn_A 76 SRYGNPTVSVFEERLRLIEGA--PAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDG 153 (414)
T ss_dssp TTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred CCCCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCC
Confidence 345666678899999999984 5788999999999999999999999999999999987766544 8999999986
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ |+++++++++ .++++|++++|+||||.+. +.+.+.++|+++|
T Consensus 154 ~-----d~~~l~~ai~-~~t~~v~le~p~NptG~~~-~l~~i~~la~~~g 196 (414)
T 3ndn_A 154 D-----DLSQWERALS-VPTQAVFFETPSNPMQSLV-DIAAVTELAHAAG 196 (414)
T ss_dssp T-----CHHHHHHHTS-SCCSEEEEESSCTTTCCCC-CHHHHHHHHHHTT
T ss_pred C-----CHHHHHHhcC-CCCeEEEEECCCCCCCccc-cHHHHHHHHHHcC
Confidence 4 8999999998 6899999999999999994 6677888999875
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=137.02 Aligned_cols=139 Identities=10% Similarity=0.003 Sum_probs=109.4
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHHHHHhcCCCCeEE
Q 025730 96 DIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLIMRCVLDPGDKIV 174 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vl 174 (249)
++++++.++++.++++.+++++.. . ..|..-..++++.+++++|.+ ++++++++|+++++.+++.++ +||+|+
T Consensus 29 ~v~~~~~~~~~~~~~~~v~~a~~~--~--~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl 102 (374)
T 2aeu_A 29 ALYDLSGLSGGFLIDEKDKALLNT--Y--IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKVI 102 (374)
T ss_dssp GCEECSSCCCCCCCCHHHHHHHTS--T--THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEEE
T ss_pred ceeeecccCCCCCCCHHHHHHHHH--h--cCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEEE
Confidence 578999999999999999999872 1 112111245666677778873 478999999999999999987 999999
Q ss_pred EcCCCChhHH---HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceE-EEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 175 DCPPTFTMYE---FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKC-IFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 175 v~~P~y~~~~---~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~-i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++.|+|..+. ..++..|++++.+ .|+++++++ + .++++ |++++||||||....+.+.+.++|++||
T Consensus 103 ~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~-~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~ 172 (374)
T 2aeu_A 103 HYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-I-DKDTLVIITGSTMDLKVIELENFKKVINTAKNKE 172 (374)
T ss_dssp EECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-C-CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHT
T ss_pred EecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-C-CCccEEEEEccCCCCCCCCcccHHHHHHHHHHcC
Confidence 9999875422 2667789999988 389999988 5 78999 9999999999942245677888999875
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-16 Score=138.90 Aligned_cols=149 Identities=13% Similarity=0.089 Sum_probs=115.2
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCe
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK 172 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~ 172 (249)
...+.+..++|++++++.+.+++.+ ... ..| ++++..+|+++++++++.+. .++++|+++++.+++++++.+||+
T Consensus 13 ~~~~~~~~~~~~~g~~p~v~~ai~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~--~i~~~~g~~a~~~a~~~~~~~g~~ 89 (359)
T 3pj0_A 13 TPYKLGGNGPRNVGVLTEALQNIDDNLES-DIYGNGAVIEDFETKIAKILGKQS--AVFFPSGTMAQQIALRIWADRKEN 89 (359)
T ss_dssp CSEESSSSSCCBHHHHHHHTTTSCTTCBC-CBTTBSHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHHHHHTC
T ss_pred cchhhcCCCccccCCCHHHHHHHHhhccc-CcccCCHHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHHhcCCC
Confidence 3457788889999889999998876 333 345 56678999999999999754 355578889999999999989887
Q ss_pred --EEEcCCCChhHH---HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcc-ccCCChHHH--HHHH
Q 025730 173 --IVDCPPTFTMYE---FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPD-GRFSWTSSW--IWGI 244 (249)
Q Consensus 173 --Vlv~~P~y~~~~---~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPT-G~~~~~~e~--i~~i 244 (249)
|++..++|..+. ......|++++.++. +++.+|+++++++ . .++++|++++||||+ |.+++.+++ +.++
T Consensus 90 ~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~-~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~ 166 (359)
T 3pj0_A 90 RRVAYHPLSHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-R-EPVSSVLIELPQREIGGQLPAFEELEKISEY 166 (359)
T ss_dssp CEEEECTTCHHHHSSTTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-S-SCCSEEEEESSBGGGTSBCCCHHHHHHHHHH
T ss_pred cEEEEeccceeeehhcchHHHhcCceEEecCC-cCCCcCHHHHHhc-c-CCceEEEEEecccCCCcccCCHHHHHHHHHH
Confidence 555555543221 223457999999987 5678999999998 4 789999999999998 688776644 5788
Q ss_pred hhhhC
Q 025730 245 SSEHN 249 (249)
Q Consensus 245 ~~~~~ 249 (249)
|++||
T Consensus 167 ~~~~~ 171 (359)
T 3pj0_A 167 CHEQG 171 (359)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 98875
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-15 Score=133.60 Aligned_cols=149 Identities=15% Similarity=0.126 Sum_probs=117.7
Q ss_pred CCCCeeeccCCCC-CCCCCHHHHHHHHh-ccC-C---CCC----CC-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANEN-PYGPPPEVREALGQ-LKF-P---YIY----PD-PESRRLRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~-~~~~p~~v~~al~~-~~~-~---~~Y----p~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
++..++||+.+.. .++.++.+.+++.+ +.. . ..| .. ....+++++++++++.+. .++++++++++..
T Consensus 57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~--~i~~~sGt~a~~~ 134 (409)
T 3kki_A 57 ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE--CLLSQSGWNANVG 134 (409)
T ss_dssp CCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSE--EEEESCHHHHHHH
T ss_pred CCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCe--EEEecchHHHHHH
Confidence 3567899988753 25567888888765 322 1 111 11 235689999999999653 4445555799999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHH
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWI 241 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i 241 (249)
++.+++++||.|++++|+|..+...+...|++++.++. .|++++++++++.++++|++++|+||||.+++ .+.+
T Consensus 135 ~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~-l~~l 208 (409)
T 3kki_A 135 LLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAP-LAEL 208 (409)
T ss_dssp HHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCC-HHHH
T ss_pred HHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCC-HHHH
Confidence 99999999999999999999999999999999998874 58999999998556899999999999999965 6678
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|++||
T Consensus 209 ~~la~~~~ 216 (409)
T 3kki_A 209 VNISKEFG 216 (409)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 88899886
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=136.40 Aligned_cols=133 Identities=20% Similarity=0.276 Sum_probs=112.8
Q ss_pred CHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHH
Q 025730 110 PPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDA 187 (249)
Q Consensus 110 p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~ 187 (249)
++++.+++.+ +.....++.++..+|+++++++++.+ ++++++|+++++.+++.++ +++||+|+++.|+|..+...+
T Consensus 15 ~~~v~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~ 92 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGAK--YCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETV 92 (367)
T ss_dssp HHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH
T ss_pred CHHHHHHHHHHHhcCCccCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHH
Confidence 4567777765 33323336667899999999999964 8999999999999999998 899999999999999999999
Q ss_pred HHCCCEEEEecCCCC-CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 188 AVNGAAVVKVPRKSD-FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 188 ~~~G~~v~~v~~~~~-~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+..|++++.++.+.+ +.+|+++++++++ +++++|+ |+||||.. .+.+.+.++|+++|
T Consensus 93 ~~~G~~~~~~~~~~~~~~~d~~~l~~~i~-~~~~~v~---~~~~~G~~-~~~~~i~~la~~~~ 150 (367)
T 3nyt_A 93 ALLGAKPVYVDIDPRTYNLDPQLLEAAIT-PRTKAII---PVSLYGQC-ADFDAINAIASKYG 150 (367)
T ss_dssp HHTTCEEEEECBCTTTCSBCGGGTGGGCC-TTEEEEC---CBCGGGCC-CCHHHHHHHHHHTT
T ss_pred HHcCCEEEEEecCCccCCcCHHHHHHhcC-cCCcEEE---eeCCccCh-hhHHHHHHHHHHcC
Confidence 999999999997644 8899999999997 6888888 89999987 56777888999875
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=135.36 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=111.1
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCC--------C--cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYP--------D--PESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp--------~--~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
++.+.|+.+.+. +.|+.+.+++.+ +.....++ . ....++++.+++++|+++++|++|+|+++++.+++
T Consensus 27 ~~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al 105 (416)
T 1qz9_A 27 EGVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVL 105 (416)
T ss_dssp TTCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHH
T ss_pred CCeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHH
Confidence 356899988876 567778888765 33211111 1 23578999999999998899999999999999888
Q ss_pred HHhc------CCCCe-EEEcCCCChhHHHH----HHHC--CCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCc
Q 025730 164 RCVL------DPGDK-IVDCPPTFTMYEFD----AAVN--GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNP 230 (249)
Q Consensus 164 ~~~~------~pGd~-Vlv~~P~y~~~~~~----~~~~--G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNP 230 (249)
.+++ ++||+ |++..++|..+... ++.. |++++.++. +++++++++ .++++|++++|+||
T Consensus 106 ~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~-~~~~~v~~~~~~np 177 (416)
T 1qz9_A 106 SAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAID-QDTAVVMLTHVNYK 177 (416)
T ss_dssp HHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCS-TTEEEEEEESBCTT
T ss_pred HhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhC-CCceEEEEeccccC
Confidence 8776 89997 45556688754332 3334 999999986 688888887 68999999999999
Q ss_pred cccCCChHHHHHHHhhhhC
Q 025730 231 DGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~~e~i~~i~~~~~ 249 (249)
||.+++ .+.+.++|++||
T Consensus 178 tG~~~~-l~~i~~l~~~~~ 195 (416)
T 1qz9_A 178 TGYMHD-MQALTALSHECG 195 (416)
T ss_dssp TCBBCC-HHHHHHHHHHHT
T ss_pred cccccC-HHHHHHHHHHcC
Confidence 999965 677888899875
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-16 Score=137.34 Aligned_cols=141 Identities=16% Similarity=0.066 Sum_probs=108.6
Q ss_pred CCCCCCCHHHHHHHHh-ccC-----CCCCCC--cChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHHHHHhcCCCCeEE
Q 025730 104 ENPYGPPPEVREALGQ-LKF-----PYIYPD--PESRRLRAALAKDSGLE-SDHILVGCGADELIDLIMRCVLDPGDKIV 174 (249)
Q Consensus 104 ~~~~~~p~~v~~al~~-~~~-----~~~Yp~--~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vl 174 (249)
..|.++|+.+.+++.+ +.. .+.|+. ....++++.+++++|++ +++|++|+|+++++.+++++++++ +.++
T Consensus 10 p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~ 88 (362)
T 3ffr_A 10 PGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFH 88 (362)
T ss_dssp SSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEE
T ss_pred CCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEE
Confidence 3355667777755543 221 123332 12567889999999874 578999999999999999999988 6666
Q ss_pred EcCCCCh-hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhh-C
Q 025730 175 DCPPTFT-MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEH-N 249 (249)
Q Consensus 175 v~~P~y~-~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~-~ 249 (249)
+..+.|. .+...++..|++++.++.+.++.+|+++++ ++ +++|+|++++||||||.+++ .+.+.++|++| |
T Consensus 89 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~-~~~~~v~~~~~~nptG~~~~-l~~i~~la~~~p~ 161 (362)
T 3ffr_A 89 CVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--VP-ADAEIICLTHNETSSGVSMP-VEDINTFRDKNKD 161 (362)
T ss_dssp EECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CC-TTCCEEEEESEETTTTEECC-HHHHTTSGGGSTT
T ss_pred EcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--cc-CCccEEEEEcCCCCcceeCC-HHHHHHHHHhCCC
Confidence 7777776 344567778999999998778899999998 55 78999999999999999965 66677889887 5
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.2e-16 Score=142.01 Aligned_cols=144 Identities=18% Similarity=0.268 Sum_probs=113.1
Q ss_pred CeeeccCC-CCCCCCCHHHHHHHHh-----ccC-CCCCC---CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 96 DIVKIDAN-ENPYGPPPEVREALGQ-----LKF-PYIYP---DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 96 ~~I~L~~~-~~~~~~p~~v~~al~~-----~~~-~~~Yp---~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
++|+|+.+ ++.+++|+.+.++... ... .+.|. ++...++++.+++++|.+ ++++++|+++++.+++.
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l~- 166 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKAD--RAFCFTSGMAALSAVTH- 166 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHT-
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-
Confidence 46888886 7777777777766542 111 24453 333567888888888864 67777888899998886
Q ss_pred hcCCCCeEEEcCCCChhHHHH----HHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHH
Q 025730 166 VLDPGDKIVDCPPTFTMYEFD----AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWI 241 (249)
Q Consensus 166 ~~~pGd~Vlv~~P~y~~~~~~----~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i 241 (249)
++++||+|++++|+|..|... ++..|++++.++.+ |+++++++++ .++++|++++||||||.++ +.+.+
T Consensus 167 ~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~-~~tk~v~l~~p~NptG~v~-~l~~i 239 (464)
T 1ibj_A 167 LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIG-PQTKLVWLESPTNPRQQIS-DIRKI 239 (464)
T ss_dssp TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCC-SSEEEEEECSSCTTTCCCC-CHHHH
T ss_pred HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhc-cCceEEEEeCCCCCCCEee-cHHHH
Confidence 789999999999999988654 45589999999863 8999999998 6899999999999999996 56778
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
.++|++||
T Consensus 240 ~~la~~~g 247 (464)
T 1ibj_A 240 SEMAHAQG 247 (464)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHcC
Confidence 88899875
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-15 Score=133.82 Aligned_cols=148 Identities=14% Similarity=0.031 Sum_probs=116.7
Q ss_pred CCCeeeccCCCC-CCCCCHHHHHHHHh-ccC-CCCCC--------CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANEN-PYGPPPEVREALGQ-LKF-PYIYP--------DPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~-~~~~p~~v~~al~~-~~~-~~~Yp--------~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
+.++|+|+.|.+ .+.+++.+.+++.+ +.. +..|+ .....+|++.+++++|.+ +.++++++++++..+
T Consensus 63 g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~a 140 (427)
T 2w8t_A 63 GKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTT--GAIVFSTGYMANLGI 140 (427)
T ss_dssp TEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHH
T ss_pred CceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCC--ceEEecCcHHHHHHH
Confidence 356789999975 33477888888765 221 21121 123578999999999974 455556666799999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC---CceEEEEcCCCCccccCCChHH
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE---KPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~---~~k~i~l~~PnNPTG~~~~~~e 239 (249)
+.+++++||.|++..|+|..+...++..|++++.++. .|++++++++++. ++++|++++|+||||.+++ .+
T Consensus 141 l~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~-l~ 214 (427)
T 2w8t_A 141 ISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP-LK 214 (427)
T ss_dssp HHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC-HH
T ss_pred HHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC-HH
Confidence 9999999999999999999999999999999999873 5899999998742 7899999999999999965 67
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+.++|++||
T Consensus 215 ~l~~l~~~~g 224 (427)
T 2w8t_A 215 EMVAVAKKHG 224 (427)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 7888899875
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=135.88 Aligned_cols=133 Identities=18% Similarity=0.230 Sum_probs=111.7
Q ss_pred CHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHH
Q 025730 110 PPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDA 187 (249)
Q Consensus 110 p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~ 187 (249)
++.+.+++.+ +.....++.++..+++++++++++.+ ++++++|+++++.+++.++ +++||+|+++.|+|..+...+
T Consensus 16 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~ 93 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNWFILGDEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAV 93 (373)
T ss_dssp HHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHH
T ss_pred CHHHHHHHHHHHHCCCccCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH
Confidence 3566676665 33322235667899999999999964 8999999999999999999 899999999999999999989
Q ss_pred HHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 188 AVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 188 ~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+..|++++.++.+ +++.+|+++++++++ .++++|+ |+||||.. .+.+.+.++|+++|
T Consensus 94 ~~~g~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~---~~n~~G~~-~~l~~i~~l~~~~~ 151 (373)
T 3frk_A 94 SYTGAKPIFVEPDIRTYNIDPSLIESAIT-EKTKAII---AVHLYGQP-ADMDEIKRIAKKYN 151 (373)
T ss_dssp HHHSCEEEEECEETTTTEECGGGTGGGCC-TTEEEEE---EECCTTCC-CCHHHHHHHHHHHT
T ss_pred HHcCCEEEEEeccccccCcCHHHHHHhcC-CCCeEEE---EECCCcCc-ccHHHHHHHHHHcC
Confidence 9999999999965 668899999999998 6888888 78899998 56677888899875
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-15 Score=133.40 Aligned_cols=149 Identities=11% Similarity=0.124 Sum_probs=113.4
Q ss_pred CCCCeeeccCCCCCCC---CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANENPYG---PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~---~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+.++.. .++.+.+++.+ +... ..|+++...++++.+++++| .+++++++|+++++.+++.
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~ 111 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIK 111 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHH
Confidence 3456899988865544 57888888875 3221 22455567899999999998 7899999999999999998
Q ss_pred HhcCC----------CCeEEEcCCCChhHHHHHHHCCC-------------EEEEecCCCCCCCCHHHHHHhhccCCceE
Q 025730 165 CVLDP----------GDKIVDCPPTFTMYEFDAAVNGA-------------AVVKVPRKSDFSLNVELIADAVEREKPKC 221 (249)
Q Consensus 165 ~~~~p----------Gd~Vlv~~P~y~~~~~~~~~~G~-------------~v~~v~~~~~~~id~e~l~~~i~~~~~k~ 221 (249)
.+..+ ||+|++..|+|..+...+...+. .+..++.+ |+++++++++ .++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~-~~~~~ 185 (392)
T 3ruy_A 112 TARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAIT-PNTAA 185 (392)
T ss_dssp HHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCC-TTEEE
T ss_pred HHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhc-cCeEE
Confidence 77644 68999999999755544433322 24444432 7999999998 78999
Q ss_pred EEEcCCCCccccCCCh---HHHHHHHhhhhC
Q 025730 222 IFLTSPNNPDGRFSWT---SSWIWGISSEHN 249 (249)
Q Consensus 222 i~l~~PnNPTG~~~~~---~e~i~~i~~~~~ 249 (249)
|++++||||||.+++. .+.+.++|++||
T Consensus 186 v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~ 216 (392)
T 3ruy_A 186 FILEPIQGEAGINIPPAGFLKEALEVCKKEN 216 (392)
T ss_dssp EEECSSBSTTTSBCCCTTHHHHHHHHHHTTT
T ss_pred EEEeCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 9999999999999764 455778898875
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-15 Score=134.99 Aligned_cols=118 Identities=16% Similarity=0.208 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCe---EEEcCCCChh----HHHHHHHCCCEE-----EEec
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK---IVDCPPTFTM----YEFDAAVNGAAV-----VKVP 198 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~---Vlv~~P~y~~----~~~~~~~~G~~v-----~~v~ 198 (249)
..++++.+++++|.++++|++|+|+++++++++.+++++||+ |+++.|+|.. +...++..|+++ ..++
T Consensus 113 ~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~ 192 (465)
T 3e9k_A 113 DESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKP 192 (465)
T ss_dssp THHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECC
T ss_pred HHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEec
Confidence 467999999999999999999999999999999999887665 9999999986 344667789885 3345
Q ss_pred CCCCCCCCHHHHHHhhcc--CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 199 RKSDFSLNVELIADAVER--EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 199 ~~~~~~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.++++.+|++++++++++ +++++|++++||||||.+++ .+.+.++|++||
T Consensus 193 ~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~-l~~i~~la~~~g 244 (465)
T 3e9k_A 193 REGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN-IPAITKAGQAKG 244 (465)
T ss_dssp CTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC-HHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeec-HHHHHHHHHHcC
Confidence 667788999999999962 47899999999999999964 566778899886
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=137.61 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=95.4
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHH----HHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD----AAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~----~~~~G~~v~~v~~ 199 (249)
.+|++++..+|+++++++++.+ +.|++++| ++++.+++. ++++||+|++++|+|...... ++..|++++.++.
T Consensus 62 ~r~~~p~~~~l~~~la~~~g~~-~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 138 (403)
T 3cog_A 62 SRSGNPTRNCLEKAVAALDGAK-YCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDC 138 (403)
T ss_dssp ----CHHHHHHHHHHHHHHTCS-EEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred cCCCCchHHHHHHHHHHHhCCC-cEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECC
Confidence 4678888899999999999975 66777766 589999999 899999999999999853332 3468999999986
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ |+++++++++ +++++|++++|+||||.++ +.+.+.++|+++|
T Consensus 139 ~-----d~~~l~~~i~-~~t~~v~~~~p~nptG~~~-~l~~i~~la~~~g 181 (403)
T 3cog_A 139 S-----KIKLLEAAIT-PETKLVWIETPTNPTQKVI-DIEGCAHIVHKHG 181 (403)
T ss_dssp T-----SHHHHHHHCC-TTEEEEEEESSCTTTCCCC-CHHHHHHHHTSSS
T ss_pred C-----CHHHHHHhcC-cCCeEEEEECCCCCCCeee-CHHHHHHHHHHcC
Confidence 4 8999999998 6899999999999999996 5677778898875
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=133.05 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=110.5
Q ss_pred HHHHHHHHh-ccCCCCCCCcC--hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHH
Q 025730 111 PEVREALGQ-LKFPYIYPDPE--SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFD 186 (249)
Q Consensus 111 ~~v~~al~~-~~~~~~Yp~~g--~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~ 186 (249)
+++.+++.+ +.. ..|+..| ..+|+++++++++. ++|++|+|+++++.+++.++ +++||+|+++.|+|..+...
T Consensus 12 ~~v~~a~~~~~~~-~~~~~~g~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~ 88 (394)
T 1o69_A 12 GNELKYIEEVFKS-NYIAPLGEFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAP 88 (394)
T ss_dssp CCHHHHHHHHHHH-TTTSCTTHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHH
T ss_pred HHHHHHHHHHHHc-CCccCCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHH
Confidence 355566654 322 2234345 88999999999996 68999999999999999999 89999999999999999999
Q ss_pred HHHCCCEEEEecCCCCCCCCHHHHHHhhccC--CceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 187 AAVNGAAVVKVPRKSDFSLNVELIADAVERE--KPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 187 ~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~--~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++..|++++.++.++++.+|++++++++++. ++++|++++ |||.. .+.+.+.++|+++|
T Consensus 89 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~-~~l~~i~~l~~~~~ 149 (394)
T 1o69_A 89 ICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNA-AKMDEIVEICKEND 149 (394)
T ss_dssp HHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCC-CCHHHHHHHHHHTT
T ss_pred HHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCCh-hhHHHHHHHHHHcC
Confidence 9999999999998777889999999999743 689999886 89977 56777888898875
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-15 Score=139.45 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=102.7
Q ss_pred HHHHHHHHHcCCCC--CCE--EEeCCHHHHHHHHHHHhcCCC--------CeEEEcCCCChhHHHHHHHCCCEEEEecCC
Q 025730 133 RLRAALAKDSGLES--DHI--LVGCGADELIDLIMRCVLDPG--------DKIVDCPPTFTMYEFDAAVNGAAVVKVPRK 200 (249)
Q Consensus 133 ~lr~~la~~~~~~~--~~I--~vt~Ga~~~l~~~~~~~~~pG--------d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~ 200 (249)
++++.+++++|++. +++ ++|+|+++++.++++++.++| |+|+++.|+|..|...++..|++++.++.+
T Consensus 143 ~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~ 222 (514)
T 3mad_A 143 EVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLD 222 (514)
T ss_dssp HHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBC
T ss_pred HHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeC
Confidence 45566688888764 678 999999999999999998776 999999999999999999999999999988
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.++.+|+++|+++++ .++++|++++||||||.+. +.+.+.++|++||
T Consensus 223 ~~~~~d~~~Le~~i~-~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~ 269 (514)
T 3mad_A 223 ADYRADVAAMREAIT-PNTVVVAGSAPGYPHGVVD-PIPEIAALAAEHG 269 (514)
T ss_dssp TTSCBCHHHHHHHCC-TTEEEEEEETTCTTTCCCC-CHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHhc-cCCEEEEEeCCCCCCcccc-CHHHHHHHHHHhC
Confidence 889999999999998 6899999999999999995 5677888999886
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-14 Score=130.77 Aligned_cols=137 Identities=12% Similarity=0.019 Sum_probs=110.4
Q ss_pred CCHHHHHHHHh-ccC-CCCC-CCcCh----HHHHHHHHHHcCCCCCC-----EEEeCCHHHHHHHHHHHhcC--------
Q 025730 109 PPPEVREALGQ-LKF-PYIY-PDPES----RRLRAALAKDSGLESDH-----ILVGCGADELIDLIMRCVLD-------- 168 (249)
Q Consensus 109 ~p~~v~~al~~-~~~-~~~Y-p~~g~----~~lr~~la~~~~~~~~~-----I~vt~Ga~~~l~~~~~~~~~-------- 168 (249)
.++.+.+++.. +.. ...| ..++. .++++.+++++|++.++ +++|+|+++++.+++.++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888875 432 2233 22333 34666678888988765 99999999999999887754
Q ss_pred CC-----CeEEEcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHH
Q 025730 169 PG-----DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIW 242 (249)
Q Consensus 169 pG-----d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~ 242 (249)
+| ++|++++ +|..|...++..|++++.|+.+. ++.+|+++|+++++ .++++|++++|+||||.+ .+.+.+.
T Consensus 134 ~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~-~~t~~v~~~~~~n~tG~~-~~l~~I~ 210 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACD-ENTIGVVPTFGVTYTGNY-EFPQPLH 210 (452)
T ss_dssp TTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCC-TTEEEEECBBSCTTTCBB-CCHHHHH
T ss_pred cCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHh-hCCEEEEEEcCCcCCccc-CCHHHHH
Confidence 55 5999999 99999999999999999999765 78999999999998 689999999999999999 5777788
Q ss_pred HHhhhh
Q 025730 243 GISSEH 248 (249)
Q Consensus 243 ~i~~~~ 248 (249)
.+|+++
T Consensus 211 ~ia~~~ 216 (452)
T 2dgk_A 211 DALDKF 216 (452)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888884
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=133.72 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=98.5
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH----HHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF----DAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~----~~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+++++|.+ ..++++++++++.+++.+++++||+|++++|+|..+.. .++..|++++.++.
T Consensus 77 ~r~~~p~~~~le~~lA~l~g~~--~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~ 154 (430)
T 3ri6_A 77 SRSSNPTVEDLEQRLKNLTGAL--GVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDV 154 (430)
T ss_dssp ---CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred cCCCCHHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence 3456677889999999999964 35566666899999999999999999999999987666 56679999999986
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ |+++++++++ .++++|++++|+||||.+. +.+.+.++|+++|
T Consensus 155 ~-----d~~~l~~ai~-~~t~~v~~e~p~NptG~~~-dl~~i~~la~~~g 197 (430)
T 3ri6_A 155 M-----DSLAVEHACD-ETTKLLFLETISNPQLQVA-DLEALSKVVHAKG 197 (430)
T ss_dssp T-----CHHHHHHHCC-TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTTT
T ss_pred C-----CHHHHHHhhC-CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcC
Confidence 4 8999999998 6899999999999999995 5667888899875
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=131.53 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=100.8
Q ss_pred CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH----HHCCCEEEEecCC
Q 025730 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPRK 200 (249)
Q Consensus 125 ~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~~ 200 (249)
+|+++...+|++.++++++.+ ++++++|+++++..++..++++||+|+++.|+|..+...+ +..|.+++.++.+
T Consensus 62 r~~~~~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 139 (392)
T 3qhx_A 62 RTGNPTRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA 139 (392)
T ss_dssp TTCCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred CCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC
Confidence 445566789999999999964 7888999999999999999999999999999998666555 5589999999864
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++++++++ +++++|++++|+||||.+. +.+.+.++|++||
T Consensus 140 -----d~~~l~~~i~-~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~g 181 (392)
T 3qhx_A 140 -----DLDAVRAAIR-PTTRLIWVETPTNPLLSIA-DIAGIAQLGADSS 181 (392)
T ss_dssp -----CHHHHHHHCC-TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT
T ss_pred -----CHHHHHHhhC-CCCeEEEEECCCCCCcEEe-cHHHHHHHHHHcC
Confidence 8999999998 6899999999999999994 6777888999885
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-14 Score=129.43 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=111.7
Q ss_pred CCCCCCC-CHHHHHHHHh-ccC--CCCCC-CcC----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCe
Q 025730 103 NENPYGP-PPEVREALGQ-LKF--PYIYP-DPE----SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDK 172 (249)
Q Consensus 103 ~~~~~~~-p~~v~~al~~-~~~--~~~Yp-~~g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~ 172 (249)
+.+.+++ ++.+.+++.+ +.. ..+|+ ..| ..++++.+++++|++ ++++++++++++.+++.++ +++||+
T Consensus 7 g~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~~~gd~ 84 (418)
T 2c81_A 7 HWPEWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGIGEGDE 84 (418)
T ss_dssp -CCCSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCCCcCE
Confidence 4444544 6788888765 321 12364 234 688999999999976 5666777789999999999 899999
Q ss_pred EEEcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 173 IVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 173 Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++.|+|..+...++..|++++.++.+. ++.+|+++++++++ .++++|+++ ||||.. .+.+.+.++|+++|
T Consensus 85 Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-~~~~~v~~~---~~~G~~-~~~~~i~~~~~~~~ 157 (418)
T 2c81_A 85 VIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAIT-DKTKAIIPV---HLFGSM-ANMDEINEIAQEHN 157 (418)
T ss_dssp EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCC-TTEEEECCB---CCTTCC-CCHHHHHHHHHHTT
T ss_pred EEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhC-CCCeEEEEe---CCcCCc-ccHHHHHHHHHHCC
Confidence 99999999999999999999999999764 78899999999998 688998864 589987 56677888898875
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-15 Score=134.77 Aligned_cols=122 Identities=17% Similarity=0.126 Sum_probs=105.6
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEE---eCCHHHHHHHHHHHhcCCCCeEEEcC-CCChhHHHHH----------HH
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILV---GCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDA----------AV 189 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~v---t~Ga~~~l~~~~~~~~~pGd~Vlv~~-P~y~~~~~~~----------~~ 189 (249)
+.|++.+..+|++.+|+++|.+ ..++ ++|+++++.+++.++++|||+|++.. |.|..+...+ +.
T Consensus 54 ~~y~~~~~~~Le~~lA~l~g~e--~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~ 131 (409)
T 3jzl_A 54 YGYDDEGRDTLERVYATVFKTE--AALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKD 131 (409)
T ss_dssp TCTTCHHHHHHHHHHHHHHTCS--EEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGG
T ss_pred CCCChhHHHHHHHHHHHHhCCC--cEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHH
Confidence 5677777889999999999964 3444 88899999999999999999999998 9999877543 55
Q ss_pred CCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcC----CCCccccCCChHHHHHHHhhh--hC
Q 025730 190 NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTS----PNNPDGRFSWTSSWIWGISSE--HN 249 (249)
Q Consensus 190 ~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~----PnNPTG~~~~~~e~i~~i~~~--~~ 249 (249)
.|++++.++.++++.+|+++++++++ +++|+|++++ |+||||.+ .+.+.+.++|++ ||
T Consensus 132 ~G~~~~~v~~~~~g~~d~e~l~~ai~-~~tklV~i~~s~g~p~nptg~v-~~l~~I~~la~~~~~~ 195 (409)
T 3jzl_A 132 FHIGYSSVPLLENGDVDFPRIAKKMT-PKTKMIGIQRSRGYADRPSFTI-EKIKEMIVFVKNINPE 195 (409)
T ss_dssp GTCEEEECCCCTTSCCCHHHHHHHCC-TTEEEEEEECSCTTSSSCCCCH-HHHHHHHHHHHHHCTT
T ss_pred cCCEEEEeCCCCCCCcCHHHHHHhcc-CCCeEEEEECCCCCCCCCcCcc-ccHHHHHHHHHhhCCC
Confidence 79999999987788899999999998 6899999999 99999999 567778888988 64
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-15 Score=134.82 Aligned_cols=133 Identities=16% Similarity=0.084 Sum_probs=109.9
Q ss_pred HHHHHHHHhc---------cCCCCCCCcChHHHHHHHHHHcCCCCCCEEE---eCCHHHHHHHHHHHhcCCCCeEEEcC-
Q 025730 111 PEVREALGQL---------KFPYIYPDPESRRLRAALAKDSGLESDHILV---GCGADELIDLIMRCVLDPGDKIVDCP- 177 (249)
Q Consensus 111 ~~v~~al~~~---------~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~v---t~Ga~~~l~~~~~~~~~pGd~Vlv~~- 177 (249)
+.|++++.+. ..++.|++.+..+|++.+|+++|.+ ..++ ++|+++++..++.++++|||+|++.+
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e--~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~ 124 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTE--SAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICG 124 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCS--EEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSS
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCC--ceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 5677777652 1235667777889999999999964 3455 78889999999999999999999999
Q ss_pred CCChhHHHH-----------HHHCCCEEEEecCCCCCCCCHHHHHHhhcc-CCceEEEEcC----CCCccccCCChHHHH
Q 025730 178 PTFTMYEFD-----------AAVNGAAVVKVPRKSDFSLNVELIADAVER-EKPKCIFLTS----PNNPDGRFSWTSSWI 241 (249)
Q Consensus 178 P~y~~~~~~-----------~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-~~~k~i~l~~----PnNPTG~~~~~~e~i 241 (249)
|.|..+... ++..|++++.++. +++.+|++++++++++ .++|+|++++ |+||||.+ .+.+.+
T Consensus 125 ~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v-~dl~~i 202 (427)
T 3hvy_A 125 MPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRI-AEIAEI 202 (427)
T ss_dssp SCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCH-HHHHHH
T ss_pred CCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccH-HHHHHH
Confidence 999877633 3457999999998 6788999999999974 5899999999 99999998 567778
Q ss_pred HHHhhh
Q 025730 242 WGISSE 247 (249)
Q Consensus 242 ~~i~~~ 247 (249)
.++|++
T Consensus 203 ~~ia~~ 208 (427)
T 3hvy_A 203 IKSIRE 208 (427)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888988
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.9e-15 Score=131.55 Aligned_cols=117 Identities=25% Similarity=0.263 Sum_probs=99.0
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH----HHHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF----DAAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~----~~~~~G~~v~~v~~ 199 (249)
.+|++++..+|+++++++++.+ +.|++++| ++++.++++.++++||+|+++.|+|..... .++..|.+++.++.
T Consensus 47 ~~~~~~~~~~l~~~la~~~~~~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 124 (386)
T 1cs1_A 47 SRRGNPTRDVVQRALAELEGGA-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 124 (386)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT
T ss_pred eCCCCccHHHHHHHHHHHhCCC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCC
Confidence 4567777899999999999976 66777666 899999999999999999999999985332 34568999999986
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ |+++++++++ .++++|++++|+||||.++ +.+.+.++|++||
T Consensus 125 ~-----d~~~l~~~i~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~ 167 (386)
T 1cs1_A 125 G-----DEQALRAALA-EKPKLVLVESPSNPLLRVV-DIAKICHLAREVG 167 (386)
T ss_dssp T-----CHHHHHHHHH-TCCSEEEEECSCTTTCCCC-CHHHHHHHHHHTT
T ss_pred C-----CHHHHHHhhc-cCCcEEEEeCCCCCCCccc-CHHHHHHHHHHcC
Confidence 3 8999999998 6899999999999999996 5677888898875
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-14 Score=128.11 Aligned_cols=134 Identities=19% Similarity=0.229 Sum_probs=108.2
Q ss_pred CCCCCCHHHHHHHHhccCCCCCCC---cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh
Q 025730 105 NPYGPPPEVREALGQLKFPYIYPD---PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT 181 (249)
Q Consensus 105 ~~~~~p~~v~~al~~~~~~~~Yp~---~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~ 181 (249)
..++.++.+.+++.. ...+.|.. +...++++.++++++.+ ++++++|+++++.+++.+++++||+|+++.|+|.
T Consensus 30 ~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~ 106 (412)
T 2cb1_A 30 YGFKTLEEGQERFAT-GEGYVYARQKDPTAKALEERLKALEGAL--EAVVLASGQAATFAALLALLRPGDEVVAAKGLFG 106 (412)
T ss_dssp CCCSSHHHHHHHHHH-CCSCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCH
T ss_pred eecCChHHHHHHhcc-ccCcCcCCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCch
Confidence 345666677666652 22355642 34788999999999964 8999999999999999999999999999999998
Q ss_pred hHHHH----HHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 182 MYEFD----AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 182 ~~~~~----~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+... ++..|++++.++. |+++++++++ +++++|++++|+||||.++ +.+.+.++|++||
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~~------~~~~l~~~i~-~~~~~v~~~~~~n~~G~~~-~l~~i~~l~~~~~ 170 (412)
T 2cb1_A 107 QTIGLFGQVLSLMGVTVRYVDP------EPEAVREALS-AKTRAVFVETVANPALLVP-DLEALATLAEEAG 170 (412)
T ss_dssp HHHHHHHHTTTTTTCEEEEECS------SHHHHHHHCC-TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCEEEEECC------CHHHHHHHhc-cCCeEEEEeCCCCCCcccc-cHHHHHHHHHHcC
Confidence 54443 3447999999975 3899999998 6899999999999999996 5777888999875
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.8e-15 Score=135.26 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=100.9
Q ss_pred HHHHHHHHHcCCC--CCCEEEeCCHHHHHHHHHHHhcC-----CC---CeEEEcCCCChhHHHHHHHCCCEEEEecCCC-
Q 025730 133 RLRAALAKDSGLE--SDHILVGCGADELIDLIMRCVLD-----PG---DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS- 201 (249)
Q Consensus 133 ~lr~~la~~~~~~--~~~I~vt~Ga~~~l~~~~~~~~~-----pG---d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~- 201 (249)
++++.+++++|++ ++++++++|+++++.++++++.+ +| |+|+++.|+|..+...++..|++++.|+.++
T Consensus 111 ~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~ 190 (497)
T 3mc6_A 111 EVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPT 190 (497)
T ss_dssp HHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTT
T ss_pred HHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCcc
Confidence 4556677778877 78999999999999999998865 56 8999999999999999999999999999766
Q ss_pred CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 202 ~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++.+|+++|+++++ .++++|++++||||||.+. +.+.+.++|++||
T Consensus 191 ~~~~d~~~l~~~i~-~~~~~v~~~~p~nptG~~~-~l~~i~~la~~~g 236 (497)
T 3mc6_A 191 TYQVDLGKVKKFIN-KNTVLLVGSAPNFPHGIAD-DIEGLGKIAQKYK 236 (497)
T ss_dssp TCSBCTTTTGGGCC-SSEEEEEEETTCTTTCCCC-SCTTTTTHHHHTT
T ss_pred cCcCCHHHHHHHHh-hCCEEEEEECCCCCCCcCC-CHHHHHHHHHHhC
Confidence 78899999999998 6899999999999999994 5667778898875
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.3e-15 Score=131.89 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=113.4
Q ss_pred CCCeeeccCC--CCCCC-CCHHHHHHHHh-ccC----CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 94 PEDIVKIDAN--ENPYG-PPPEVREALGQ-LKF----PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 94 ~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~----~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
+...+|++.+ .++++ +++.+.+++.+ +.. ...|+.....++++.+++++| .++|++|+|+++++.+++..
T Consensus 39 g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~v~~~~gg~~a~~~al~~ 116 (397)
T 2ord_A 39 GNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF--GGKVFFANTGTEANEAAIKI 116 (397)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT--SCEEEEESSHHHHHHHHHHH
T ss_pred CCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHH
Confidence 3457898877 25554 47888888765 221 123544456889999999998 67999999999999999998
Q ss_pred hcC------C-CCeEEEcCCCChh-HHHHHHHCCCE------------EEEecCCCCCCCCHHHHHHhhccCCceEEEEc
Q 025730 166 VLD------P-GDKIVDCPPTFTM-YEFDAAVNGAA------------VVKVPRKSDFSLNVELIADAVEREKPKCIFLT 225 (249)
Q Consensus 166 ~~~------p-Gd~Vlv~~P~y~~-~~~~~~~~G~~------------v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~ 225 (249)
+.. + +|+|++.+|+|.. +...+...|.+ ++.++. .|+++++++++ .++++|+++
T Consensus 117 ~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~l~-~~~~~v~~~ 190 (397)
T 2ord_A 117 ARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-----NNVEDLRRKMS-EDVCAVFLE 190 (397)
T ss_dssp HHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-----TCHHHHHHHCC-TTEEEEEEC
T ss_pred HHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-----CCHHHHHHHhh-cCeEEEEEe
Confidence 753 5 4789999999964 44466677776 777764 28999999998 689999999
Q ss_pred CCCCcccc-CCChH--HHHHHHhhhhC
Q 025730 226 SPNNPDGR-FSWTS--SWIWGISSEHN 249 (249)
Q Consensus 226 ~PnNPTG~-~~~~~--e~i~~i~~~~~ 249 (249)
+||||||. +++.+ +.+.++|++||
T Consensus 191 ~~~nptG~~~~~~~~l~~l~~l~~~~~ 217 (397)
T 2ord_A 191 PIQGESGIVPATKEFLEEARKLCDEYD 217 (397)
T ss_dssp SEECTTTCEECCHHHHHHHHHHHHHHT
T ss_pred cccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 99999999 77665 45788898875
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-14 Score=126.31 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=109.7
Q ss_pred CCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-------cCCCCeEEEcCCCC
Q 025730 109 PPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-------LDPGDKIVDCPPTF 180 (249)
Q Consensus 109 ~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-------~~pGd~Vlv~~P~y 180 (249)
.++.+.+++.+ +.....|+..+..+++++++++++.+ ++++++++++++.+++.++ +++||+|+++.|+|
T Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~ 90 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSW 90 (390)
T ss_dssp CCHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSC
T ss_pred CCHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCc
Confidence 35677777765 33333346667899999999999975 5677777778999999998 78999999999999
Q ss_pred hhHHHHHHHCCCEEEEecCCCC-CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 181 TMYEFDAAVNGAAVVKVPRKSD-FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 181 ~~~~~~~~~~G~~v~~v~~~~~-~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
..+...++..|++++.++.+.+ +.+|+++++++++ .++++|+++| ++|.. .+.+.+.++|++||
T Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-~~~~~v~~~~---~~g~~-~~~~~i~~l~~~~~ 155 (390)
T 3b8x_A 91 STTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVT-DSTKAILTVN---LLGNP-NNFDEINKIIGGRD 155 (390)
T ss_dssp HHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCC-TTEEEEEEEC---GGGCC-CCHHHHHHHHTTSC
T ss_pred HHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhC-cCCeEEEEEC---CccCh-hhHHHHHHHHHHcC
Confidence 9999999999999999997654 8899999999998 6899999885 45655 56778888898875
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=129.14 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=99.2
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHH----HHHCCCEEEEecC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD----AAVNGAAVVKVPR 199 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~----~~~~G~~v~~v~~ 199 (249)
.+|+++...+|++.+++++|.+ ++++++++++++.+++.+++++||+|+++.|+|..+... ++..|++++.++.
T Consensus 54 ~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 131 (389)
T 3acz_A 54 SRLGNPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT 131 (389)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC
Confidence 3456666889999999999975 566666777999999999999999999999999865444 5779999999986
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 200 ~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|+++++++++ +++++|++++|+||||.++ +.+.+.++|+++|
T Consensus 132 -----~d~~~l~~~i~-~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~ 174 (389)
T 3acz_A 132 -----SDVEKVKAAWK-PNTKMVYLESPANPTCKVS-DIKGIAVVCHERG 174 (389)
T ss_dssp -----TCHHHHHHTCC-TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT
T ss_pred -----CCHHHHHHhcC-CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcC
Confidence 38999999998 6899999999999999996 5677888898875
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-15 Score=130.91 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=114.2
Q ss_pred CCCeeeccCCC--CCCC-CCHHHHHHHHh-ccC----CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 94 PEDIVKIDANE--NPYG-PPPEVREALGQ-LKF----PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 94 ~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~----~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
+...+|++.+. ++++ +++.+.+++.+ +.. ...|+.....++++.+++++++++++|++|+|+++++.+++++
T Consensus 44 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~ 123 (395)
T 1vef_A 44 GNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKF 123 (395)
T ss_dssp SCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHH
Confidence 34578998886 6776 88888888875 321 1235555678999999999988888999999999999999987
Q ss_pred hc--CCCCeEEEcCCCChh-HHHHHHHCCCE------------EEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCc
Q 025730 166 VL--DPGDKIVDCPPTFTM-YEFDAAVNGAA------------VVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNP 230 (249)
Q Consensus 166 ~~--~pGd~Vlv~~P~y~~-~~~~~~~~G~~------------v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNP 230 (249)
+. .+||+|++.+|+|.. +...+...|.+ +..++. .|+++++++++ .++++|+++.++||
T Consensus 124 ~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~-~~~~~v~~~~~~~~ 197 (395)
T 1vef_A 124 ARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVD-EETAAVILEPVQGE 197 (395)
T ss_dssp HHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCC-TTEEEEEECSEETT
T ss_pred HHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhc-cCEEEEEEeCccCC
Confidence 63 678999999999964 44455666765 333332 48999999998 68898887666899
Q ss_pred cccCCCh---HHHHHHHhhhhC
Q 025730 231 DGRFSWT---SSWIWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~---~e~i~~i~~~~~ 249 (249)
||.+++. .+.+.++|++||
T Consensus 198 tG~~~~~~~~l~~i~~l~~~~~ 219 (395)
T 1vef_A 198 GGVRPATPEFLRAAREITQEKG 219 (395)
T ss_dssp TTSEECCHHHHHHHHHHHHHHT
T ss_pred CCccCCCHHHHHHHHHHHHHcC
Confidence 9987653 355778898875
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=133.33 Aligned_cols=137 Identities=16% Similarity=0.082 Sum_probs=111.2
Q ss_pred HHHHHHHHhc---------cCCCCCCCcChHHHHHHHHHHcCCCCCCEEE--eCCHHHHHHHHHHHhcCCCCeEEEcC-C
Q 025730 111 PEVREALGQL---------KFPYIYPDPESRRLRAALAKDSGLESDHILV--GCGADELIDLIMRCVLDPGDKIVDCP-P 178 (249)
Q Consensus 111 ~~v~~al~~~---------~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~v--t~Ga~~~l~~~~~~~~~pGd~Vlv~~-P 178 (249)
+.|++++.+. ..++.|++.+..+|++.+|+++|.+.. ++. ++|+++++..++.++++|||+|++.+ |
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~a-lv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~ 124 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESA-LVRPHFVNGTHALGAALFGNLRPGNTMLSVCGE 124 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHHCCTTCEEEESSSS
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcce-EEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4577777541 123567777788999999999996543 332 78889999999999999999999999 9
Q ss_pred CChhHHHH-----------HHHCCCEEEEecCCCCCCCCHHHHHHhhcc-CCceEEEEcC----CCCccccCCChHHHHH
Q 025730 179 TFTMYEFD-----------AAVNGAAVVKVPRKSDFSLNVELIADAVER-EKPKCIFLTS----PNNPDGRFSWTSSWIW 242 (249)
Q Consensus 179 ~y~~~~~~-----------~~~~G~~v~~v~~~~~~~id~e~l~~~i~~-~~~k~i~l~~----PnNPTG~~~~~~e~i~ 242 (249)
.|..+... ++..|++++.++.++++.+|++++++++++ +++|+|++++ |+||||.+ .+.+.+.
T Consensus 125 ~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i-~dl~~i~ 203 (427)
T 3i16_A 125 PYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLI-EDIKSIV 203 (427)
T ss_dssp CCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCH-HHHHHHH
T ss_pred ccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccH-HHHHHHH
Confidence 99877633 345799999999877888999999999974 5899999999 99999998 5677788
Q ss_pred HHhhh--hC
Q 025730 243 GISSE--HN 249 (249)
Q Consensus 243 ~i~~~--~~ 249 (249)
++|++ +|
T Consensus 204 ~la~~~~~g 212 (427)
T 3i16_A 204 DCVKNIRKD 212 (427)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCCC
Confidence 88988 64
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-15 Score=134.39 Aligned_cols=149 Identities=20% Similarity=0.283 Sum_probs=112.6
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCCc----ChH---HHH----HHHHHHcCCCCCCEEEeCCHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPDP----ESR---RLR----AALAKDSGLESDHILVGCGADELID 160 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~~----g~~---~lr----~~la~~~~~~~~~I~vt~Ga~~~l~ 160 (249)
.+.|+|..+++++ ++.+.+++.+ +. ...+||+. |.+ .+. +.+++++|+++++|++++|+ +++.
T Consensus 23 ~~~i~~~~~~~~~--~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt-~a~~ 99 (407)
T 2dkj_A 23 REGLELIASENFV--SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGS-QANM 99 (407)
T ss_dssp HTSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHH-HHHH
T ss_pred hcceeeccCCCCC--CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchH-HHHH
Confidence 3569999999998 7899999976 43 23566542 322 232 48889999887667777876 5999
Q ss_pred HHHHHhcCCCCeEEEcCCCChhH---HHHHHHCCC--EEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 161 LIMRCVLDPGDKIVDCPPTFTMY---EFDAAVNGA--AVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 161 ~~~~~~~~pGd~Vlv~~P~y~~~---~~~~~~~G~--~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
+++.+++++||+|+++.|+|..+ ...++..|. .++.++.+ +++.+|++++++++++.++++|++++|+|| ..
T Consensus 100 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~ 177 (407)
T 2dkj_A 100 AVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RF 177 (407)
T ss_dssp HHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SC
T ss_pred HHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CC
Confidence 99999999999999999999876 333344455 55555543 468899999999997447899999999998 44
Q ss_pred CChHHHHHHHhhhhC
Q 025730 235 SWTSSWIWGISSEHN 249 (249)
Q Consensus 235 ~~~~e~i~~i~~~~~ 249 (249)
.+.+.+.++|++||
T Consensus 178 -~~l~~i~~l~~~~~ 191 (407)
T 2dkj_A 178 -WDFKAFREIADEVG 191 (407)
T ss_dssp -CCHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHcC
Confidence 45677888999875
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-14 Score=131.00 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHh-ccCC-CCC-CCcChH----HHHHHHHHHcCCC--CCCEE---EeCCHHHHHHHHHHHhcCC-----
Q 025730 107 YGPPPEVREALGQ-LKFP-YIY-PDPESR----RLRAALAKDSGLE--SDHIL---VGCGADELIDLIMRCVLDP----- 169 (249)
Q Consensus 107 ~~~p~~v~~al~~-~~~~-~~Y-p~~g~~----~lr~~la~~~~~~--~~~I~---vt~Ga~~~l~~~~~~~~~p----- 169 (249)
..+++.+.+++.. +... ..| ..++.. ++++.+++++|++ +++++ +|+|+++++.+++.++..+
T Consensus 66 ~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~ 145 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (502)
T ss_dssp CCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHH
Confidence 3456788888876 3221 122 122222 5667788888987 55554 4899999999998887655
Q ss_pred ---CC-----eEEEcCCCChhHHHHHHHCCCEEEEecCCCC-CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH
Q 025730 170 ---GD-----KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD-FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 170 ---Gd-----~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~-~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~ 240 (249)
|| +|+++.++|..|...++..|++++.|+.+++ +.+|+++++++++ +++++|++++|+||||.+ .+.+.
T Consensus 146 ~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-~~t~~v~~~~~~n~tG~~-~~l~~ 223 (502)
T 3hbx_A 146 KAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVD-ENTICVAAILGSTLNGEF-EDVKL 223 (502)
T ss_dssp HHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCC-TTEEEEEEEBSCTTTCCB-CCHHH
T ss_pred HhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHh-hCCEEEEEecCCCCCCcc-cCHHH
Confidence 76 9999999999999999999999999997655 8999999999998 689999999999999999 56777
Q ss_pred HHHHhhhh
Q 025730 241 IWGISSEH 248 (249)
Q Consensus 241 i~~i~~~~ 248 (249)
+..+|+++
T Consensus 224 I~~ia~~~ 231 (502)
T 3hbx_A 224 LNDLLVEK 231 (502)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888876
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=127.84 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=111.7
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC----cC----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD----PE----SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~----~g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.++.|+ +...... +.+.+++.. ....+.|+. .| ..++++.+++++|++. .+++++|+++++..++.++
T Consensus 67 ~~~~lg-~~~~~~~-p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~ 143 (474)
T 1wyu_B 67 TFYPLG-SCTMKYN-PKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILII 143 (474)
T ss_dssp SCCCBT-TTCCCCC-CHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHH
T ss_pred Cccccc-cccccCC-HHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHH
Confidence 467787 4433333 345555544 222234432 22 3456667777778764 4678899999998755543
Q ss_pred ----cCCCC-----eEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 167 ----LDPGD-----KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 167 ----~~pGd-----~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
.++|| +|+++.|+|..+...++..|++++.++.++++.+|+++|+++++ .++++|++++| ||||.+..+
T Consensus 144 ~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~-~~t~~v~~~~p-n~~G~~~~~ 221 (474)
T 1wyu_B 144 RAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELG-PHVAALMLTNP-NTLGLFERR 221 (474)
T ss_dssp HHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCS-TTEEEEEECSS-CTTSCCCTT
T ss_pred HHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhC-CCceEEEEECC-CCCcccCCC
Confidence 35888 99999999999999999999999999987788999999999998 68999999998 589988556
Q ss_pred HHHHHHHhhhhC
Q 025730 238 SSWIWGISSEHN 249 (249)
Q Consensus 238 ~e~i~~i~~~~~ 249 (249)
.+.+.++|++||
T Consensus 222 l~~i~~l~~~~g 233 (474)
T 1wyu_B 222 ILEISRLCKEAG 233 (474)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 788899999875
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=134.28 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=95.9
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHH----HHHCCCEEEEecCCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD----AAVNGAAVVKVPRKSD 202 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~----~~~~G~~v~~v~~~~~ 202 (249)
+++...+|++.+++++|.+ +.|++++|+ +++.+++.+++++||+|+++.|+|..+... ++..|++++.++.+
T Consensus 112 ~~~~~~~l~~~lA~l~g~~-~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-- 187 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEGAE-STLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA-- 187 (445)
T ss_dssp CCHHHHHHHHHHHHHHTCS-EEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS--
T ss_pred CChHHHHHHHHHHHHhCCC-cEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC--
Confidence 4455779999999999975 566666665 999999999999999999999999865553 44589999999863
Q ss_pred CCCCHHHHHHhhccCCc-eEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 FSLNVELIADAVEREKP-KCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 ~~id~e~l~~~i~~~~~-k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++++++++ +++ ++|++++|+||||.+. +.+.+.++|++||
T Consensus 188 ---d~~~l~~ai~-~~tv~lV~le~p~NptG~v~-dl~~I~~la~~~g 230 (445)
T 1qgn_A 188 ---DVGALELALN-QKKVNLFFTESPTNPFLRCV-DIELVSKLCHEKG 230 (445)
T ss_dssp ---CHHHHHHHHH-HSCEEEEEEESSCTTTCCCC-CHHHHHHHHHHTT
T ss_pred ---CHHHHHHHhc-cCCCCEEEEeCCCCCCCccc-CHHHHHHHHHHcC
Confidence 8999999998 578 9999999999999995 5677888999875
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=129.68 Aligned_cols=148 Identities=19% Similarity=0.136 Sum_probs=107.0
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCCC-------cChH----HHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF--PYIYPD-------PESR----RLRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp~-------~g~~----~lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
+.|+|..++++. ++.+.+++.+ +.. ...||. .... .+++.+++++|+++++|++++| ++++.+
T Consensus 26 ~~i~l~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sG-t~a~~~ 102 (417)
T 3n0l_A 26 EGLEMIASENFT--LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSG-SQANQG 102 (417)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHH
T ss_pred cCeeeecccCCC--CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccH-HHHHHH
Confidence 458998888875 7889999876 322 123432 1122 3455888899998888988888 799999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHH---HHHH--CCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEF---DAAV--NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~---~~~~--~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
++.+++++||+|+++.|+|..+.. .... .+..++.++.++++.+|++++++++++.++++|++++||| |.+++
T Consensus 103 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~ 180 (417)
T 3n0l_A 103 VYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVID 180 (417)
T ss_dssp HHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCCC
T ss_pred HHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccCC
Confidence 999999999999999999976543 2222 4556777777677889999999999755899999989887 77754
Q ss_pred hHHHHHHHhhhhC
Q 025730 237 TSSWIWGISSEHN 249 (249)
Q Consensus 237 ~~e~i~~i~~~~~ 249 (249)
.+.+.++|++||
T Consensus 181 -l~~i~~l~~~~~ 192 (417)
T 3n0l_A 181 -FAKFREIADEIG 192 (417)
T ss_dssp -HHHHHHHHHHHT
T ss_pred -HHHHHHHHHHcC
Confidence 677888999886
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=124.99 Aligned_cols=108 Identities=14% Similarity=0.106 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH----HHCCCEEEEecCCCCCCCCHH
Q 025730 133 RLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPRKSDFSLNVE 208 (249)
Q Consensus 133 ~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~~~~~~id~e 208 (249)
+|++.+++++|.+ +.|++++| ++++.+++.+++++||+|+++.|+|..+...+ +..|++++.++. .|++
T Consensus 2 ~l~~~la~~~g~~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~ 74 (331)
T 1pff_A 2 ALEGKIAKLEHAE-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-----AVPG 74 (331)
T ss_dssp HHHHHHHHHHTCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----TSTT
T ss_pred hHHHHHHHHhCCC-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----CCHH
Confidence 6899999999976 55655555 89999999999999999999999999776554 458999999975 4788
Q ss_pred HHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh-hC
Q 025730 209 LIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE-HN 249 (249)
Q Consensus 209 ~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~-~~ 249 (249)
+++++++ +++++|++++||||||.++ +.+.+.++|++ +|
T Consensus 75 ~l~~~i~-~~~~~v~~~~~~nptG~~~-~~~~i~~~~~~~~~ 114 (331)
T 1pff_A 75 NIEKHLK-PNTRIVYFETPANPTLKVI-DIEDAVKQARKQKD 114 (331)
T ss_dssp HHHHTCC-TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSSS
T ss_pred HHHHhhc-CCCeEEEEECCCCCcCccc-CHHHHHHHHhhhcC
Confidence 9999998 6899999999999999996 56777888888 65
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-15 Score=133.25 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=102.5
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccCC-----------CCCCCc--ChHHHHHHHHHHcCCC-CCCEEEeCCH-HHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKFP-----------YIYPDP--ESRRLRAALAKDSGLE-SDHILVGCGA-DELI 159 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~~-----------~~Yp~~--g~~~lr~~la~~~~~~-~~~I~vt~Ga-~~~l 159 (249)
.++.++.|.. ++|+.+++++.+ +... ++|+.. ...++++.+++++|++ +++|++|+|+ ++++
T Consensus 3 ~~~~~~~g~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al 80 (360)
T 1w23_A 3 QVFNFNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF 80 (360)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred ceEeecCCCc--CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHH
Confidence 3566666643 778999999876 3210 112211 2568999999999986 4699999999 9999
Q ss_pred HHHHHHhcCC---CCeEEEcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHH-hhccCCceEEEEcCCCCccccC
Q 025730 160 DLIMRCVLDP---GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIAD-AVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 160 ~~~~~~~~~p---Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~-~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
.+++..++.+ ||.|+++.++|..+ ..++..| +++.++.+. ++.+|++++++ +++ +++|+|++++||||||.+
T Consensus 81 ~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~-~~~k~v~~~~~~nptG~~ 157 (360)
T 1w23_A 81 TMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLLG-ETHIAASTKANSYQSIPDFSEFQLN-ENDAYLHITSNNTIYGTQ 157 (360)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC-TTEEEEEEESEETTTTEE
T ss_pred HHHHHHhcCCCCcccEEEecchhHHHH-HHHHHhC-CeEEeecccccCcCCccchHhhccC-CCCCEEEEeCCCCCccee
Confidence 9999998865 56677766666543 3456689 999999653 44589999998 886 789999999999999998
Q ss_pred CC
Q 025730 235 SW 236 (249)
Q Consensus 235 ~~ 236 (249)
++
T Consensus 158 ~~ 159 (360)
T 1w23_A 158 YQ 159 (360)
T ss_dssp CS
T ss_pred cc
Confidence 75
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-14 Score=130.49 Aligned_cols=116 Identities=11% Similarity=0.035 Sum_probs=97.8
Q ss_pred CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH----HHCCCEEEEecCC
Q 025730 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPRK 200 (249)
Q Consensus 125 ~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~~ 200 (249)
+|+++...+|++.+|+++|.+ ++++++|+++++.+++.+++++||+|+++.+.|......+ +..|+++..++.+
T Consensus 78 r~~~p~~~~le~~lA~l~g~~--~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~ 155 (415)
T 2fq6_A 78 RRGTLTHFSLQQAMCELEGGA--GCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL 155 (415)
T ss_dssp TTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred CCCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC
Confidence 345556788999999999963 5777789999999999999999999999999998655443 3479999999753
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh--hC
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE--HN 249 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~--~~ 249 (249)
|+++++++++ +++|+|++++|+||||.++ +.+.+.++|++ +|
T Consensus 156 -----d~~~le~ai~-~~tklV~~e~~~NptG~v~-dl~~I~~la~~~~~g 199 (415)
T 2fq6_A 156 -----IGADIVKHLQ-PNTKIVFLESPGSITMEVH-DVPAIVAAVRSVVPD 199 (415)
T ss_dssp -----CGGGGGGGCC-TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHCTT
T ss_pred -----CHHHHHHhhc-cCCcEEEEECCCCCCCEee-cHHHHHHHHHhhcCC
Confidence 7899999998 6899999999999999995 56778888988 75
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=130.77 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=93.5
Q ss_pred CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH----HHHHCCCEEEEecCC
Q 025730 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF----DAAVNGAAVVKVPRK 200 (249)
Q Consensus 125 ~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~----~~~~~G~~v~~v~~~ 200 (249)
+|+++...++|++++++++.+ ++++++++++++.+++. ++++||+|+++.|+|..... .++..|++++.++.+
T Consensus 51 ~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 127 (393)
T 1n8p_A 51 RSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL 127 (393)
T ss_dssp TTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH
T ss_pred cCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC
Confidence 455666789999999999975 45555556999999999 89999999999999984332 345579999999864
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
| ++++++++ .++++|++++||||||.++ +.+.+.++|+++
T Consensus 128 -----d-~~l~~~i~-~~t~lv~~~~~~nptG~~~-~l~~i~~la~~~ 167 (393)
T 1n8p_A 128 -----L-NDLPQLIK-ENTKLVWIETPTNPTLKVT-DIQKVADLIKKH 167 (393)
T ss_dssp -----H-HHHHHHSC-SSEEEEEECSSCTTTCCCC-CHHHHHHHHHHH
T ss_pred -----h-HHHHHhcc-cCceEEEEECCCCCcceec-CHHHHHHHHHHh
Confidence 7 89999997 6899999999999999996 567778889887
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.9e-14 Score=126.64 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=97.0
Q ss_pred CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH----HHCCCEEEEecCC
Q 025730 125 IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPRK 200 (249)
Q Consensus 125 ~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~~ 200 (249)
+|+++...++++.+++++|.+ +.++++++++++.+++.+++++||+|+++.|+|..+...+ ...|.+++.++..
T Consensus 61 r~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 138 (398)
T 1gc0_A 61 RISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA 138 (398)
T ss_dssp --CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT
T ss_pred CCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC
Confidence 445666889999999999975 4455555579999999999999999999999998776655 5679999999852
Q ss_pred CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 201 ~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++++++++ +++++|++++|+||||.++ +.+.+.++|++||
T Consensus 139 -----d~~~l~~~i~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~ 180 (398)
T 1gc0_A 139 -----DLQALEAAMT-PATRVIYFESPANPNMHMA-DIAGVAKIARKHG 180 (398)
T ss_dssp -----CHHHHHHHCC-TTEEEEEEESSCTTTCCCC-CHHHHHHHHGGGT
T ss_pred -----CHHHHHHhcC-CCCeEEEEECCCCCCcccc-cHHHHHHHHHHcC
Confidence 8999999998 6899999999999999996 5677888899875
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=132.67 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=103.0
Q ss_pred HHHHHHHHh-ccCC-CCCC-CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCC-----C----CeEEEcCC
Q 025730 111 PEVREALGQ-LKFP-YIYP-DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDP-----G----DKIVDCPP 178 (249)
Q Consensus 111 ~~v~~al~~-~~~~-~~Yp-~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~p-----G----d~Vlv~~P 178 (249)
+.+.+++.+ +..+ ..|. .++..+|+++++++++. +++++|+|+++++.+++.++.++ | |+|++..+
T Consensus 53 ~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~~~--~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~ 130 (467)
T 2oqx_A 53 GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIFGY--QYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNY 130 (467)
T ss_dssp SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHHCC--SEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESS
T ss_pred HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHhCc--CcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEeccc
Confidence 455566554 3332 3574 45678999999999985 68999999999999999998888 9 99888754
Q ss_pred CChhHHHHHHHCCCEEEEec------CC----CCCCCCHHHHHHhhcc---CCceEEEEcCCCCcc-ccCCChH--HHHH
Q 025730 179 TFTMYEFDAAVNGAAVVKVP------RK----SDFSLNVELIADAVER---EKPKCIFLTSPNNPD-GRFSWTS--SWIW 242 (249)
Q Consensus 179 ~y~~~~~~~~~~G~~v~~v~------~~----~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPT-G~~~~~~--e~i~ 242 (249)
.|..|.......|+.++... .+ .++.+|+++|++++++ .++++|++++||||| |.+++.+ +.+.
T Consensus 131 h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~ 210 (467)
T 2oqx_A 131 FFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMY 210 (467)
T ss_dssp CCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHH
T ss_pred ccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHH
Confidence 44556666666788776642 11 2456899999999974 378999999999998 8887665 5588
Q ss_pred HHhhhhC
Q 025730 243 GISSEHN 249 (249)
Q Consensus 243 ~i~~~~~ 249 (249)
++|++||
T Consensus 211 ~la~~~g 217 (467)
T 2oqx_A 211 SIAKKYD 217 (467)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9999986
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-14 Score=126.85 Aligned_cols=148 Identities=15% Similarity=0.221 Sum_probs=112.0
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccC----CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKF----PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~----~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+ .++++ .++.+.+++.+ +.. ...|+.+...++++.++++++. ++|++|+|+++++.++++
T Consensus 37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~v~~~~gg~~a~~~al~ 114 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFA--DRVFFCNSGAEANEAALK 114 (406)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSC--SEEEEESSHHHHHHHHHH
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCC--CeEEEeCcHHHHHHHHHH
Confidence 34567899887 24444 47888888865 322 1345555578899999999984 599999999999999999
Q ss_pred HhcC-------CC-CeEEEcCCCChhHHHHHHHCCC-------------EEEEecCCCCCCCCHHHHHHhhccCCceEEE
Q 025730 165 CVLD-------PG-DKIVDCPPTFTMYEFDAAVNGA-------------AVVKVPRKSDFSLNVELIADAVEREKPKCIF 223 (249)
Q Consensus 165 ~~~~-------pG-d~Vlv~~P~y~~~~~~~~~~G~-------------~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~ 223 (249)
.+.. +| |+|++.+|+|..+...+...+. .+..++. .|+++++++++ .++++|+
T Consensus 115 ~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~-~~~~~v~ 188 (406)
T 4adb_A 115 LARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-----NDINSASALID-DSTCAVI 188 (406)
T ss_dssp HHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----TCHHHHHTTCS-TTEEEEE
T ss_pred HHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----CcHHHHHHHhc-CCeEEEE
Confidence 8765 66 9999999999877555544443 3444432 37999999998 7899999
Q ss_pred EcCCCCccccCC--ChH--HHHHHHhhhhC
Q 025730 224 LTSPNNPDGRFS--WTS--SWIWGISSEHN 249 (249)
Q Consensus 224 l~~PnNPTG~~~--~~~--e~i~~i~~~~~ 249 (249)
++ |+||||.++ +.+ +.+.++|++||
T Consensus 189 ~~-p~np~g~~~~~~~~~l~~l~~l~~~~~ 217 (406)
T 4adb_A 189 VE-PIQGEGGVVPASNAFLQGLRELCNRHN 217 (406)
T ss_dssp EC-SEETTTTSEECCHHHHHHHHHHHHHTT
T ss_pred Ee-CCcCCCCCccCCHHHHHHHHHHHHHcC
Confidence 88 999999987 554 55788999886
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=126.88 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=98.9
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-ccC-----------CCCCCCc--ChHHHHHHHHHHcCCCCC-C-EEEeCCHHHHHH
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LKF-----------PYIYPDP--ESRRLRAALAKDSGLESD-H-ILVGCGADELID 160 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~~-----------~~~Yp~~--g~~~lr~~la~~~~~~~~-~-I~vt~Ga~~~l~ 160 (249)
++.+..+ ++++|+.+++++.+ +.. .++|++. -..++++.+++++|++++ + +++|+|+++++.
T Consensus 5 ~~l~~~~--~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~ 82 (362)
T 2c0r_A 5 AYNFNAG--PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA 82 (362)
T ss_dssp CEECCSS--SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred eeeccCC--CCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHH
Confidence 3455544 47788999999876 321 2233322 246788999999999764 6 467899999999
Q ss_pred HHHHHhcCCCCeEEEcCCC-Chh-HHHHHHHCCCEEEEecCC--CCCC--CCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 161 LIMRCVLDPGDKIVDCPPT-FTM-YEFDAAVNGAAVVKVPRK--SDFS--LNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 161 ~~~~~~~~pGd~Vlv~~P~-y~~-~~~~~~~~G~~v~~v~~~--~~~~--id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
+++.++++|||+|++.++. |.. +...++..| +++.++.+ .+++ +|.++++ ++ +++|+|++++|+||||.+
T Consensus 83 ~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~-~~t~~v~~~~~~n~tG~~ 158 (362)
T 2c0r_A 83 MIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ-DNAAYLHLTSNETIEGAQ 158 (362)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC-TTEEEEEEESEETTTTEE
T ss_pred HHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC-CCcCEEEEeCCcCcccee
Confidence 9999999999999988766 443 345667789 99999864 2233 4666553 55 689999999999999997
Q ss_pred CCh
Q 025730 235 SWT 237 (249)
Q Consensus 235 ~~~ 237 (249)
+++
T Consensus 159 ~~~ 161 (362)
T 2c0r_A 159 FKA 161 (362)
T ss_dssp CSS
T ss_pred ccc
Confidence 553
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.1e-14 Score=126.15 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=109.3
Q ss_pred CCCeeeccCCC--CCCCC--CHHHHHHHHh-ccCC-----CCCCCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANE--NPYGP--PPEVREALGQ-LKFP-----YIYPDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~--~~~~~--p~~v~~al~~-~~~~-----~~Yp~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~ 162 (249)
+...+|+..+. ++++. ++.+.+++.+ +... ..|+.....++++.++++++++ +++|++|+|+++++.++
T Consensus 41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~a 120 (419)
T 2eo5_A 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEAS 120 (419)
T ss_dssp SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHH
T ss_pred CCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHH
Confidence 34678998887 56654 6899998875 3322 2355555678999999999987 78999999999999999
Q ss_pred HHHhcC-CCCeEEEcCCCChhHHHH-HHHCC-------------CEEEEecCCCCCC----------------CCHHHHH
Q 025730 163 MRCVLD-PGDKIVDCPPTFTMYEFD-AAVNG-------------AAVVKVPRKSDFS----------------LNVELIA 211 (249)
Q Consensus 163 ~~~~~~-pGd~Vlv~~P~y~~~~~~-~~~~G-------------~~v~~v~~~~~~~----------------id~e~l~ 211 (249)
++.+.. +||+|++.+|+|..+... ....| ..++.++.++++. +|+++++
T Consensus 121 i~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~ 200 (419)
T 2eo5_A 121 IKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIE 200 (419)
T ss_dssp HHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHH
Confidence 987544 489999999999744332 22222 3577777654432 4688999
Q ss_pred -Hhhcc----CCceEEEEcCCC-CccccCCC-hH--HHHHHHhhhhC
Q 025730 212 -DAVER----EKPKCIFLTSPN-NPDGRFSW-TS--SWIWGISSEHN 249 (249)
Q Consensus 212 -~~i~~----~~~k~i~l~~Pn-NPTG~~~~-~~--e~i~~i~~~~~ 249 (249)
+++++ .+++ +++++|+ ||||.+.+ .+ +.+.++|++||
T Consensus 201 ~~~i~~~~~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~ 246 (419)
T 2eo5_A 201 DYIFVNLVPPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKYG 246 (419)
T ss_dssp HTHHHHTCCGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHT
T ss_pred HHHHhhccCCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 88863 2344 5557776 57897544 33 45778888875
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-14 Score=127.85 Aligned_cols=154 Identities=13% Similarity=0.138 Sum_probs=110.9
Q ss_pred CCCeeeccCCCC--CCC-CCHHHHHHHHh-ccCC-----CCCCCcChHHHHHHHHHHc-CCCCCCEEEeCCHHHHHHHHH
Q 025730 94 PEDIVKIDANEN--PYG-PPPEVREALGQ-LKFP-----YIYPDPESRRLRAALAKDS-GLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 94 ~~~~I~L~~~~~--~~~-~p~~v~~al~~-~~~~-----~~Yp~~g~~~lr~~la~~~-~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
+...+|+..+.+ +++ +++.+.+++.+ +... ..|+..+..+|+++|++++ +-.+++|++|+|+++++.+++
T Consensus 40 g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~ 119 (426)
T 1sff_A 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAV 119 (426)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHH
T ss_pred CCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHH
Confidence 356789988764 554 67888888876 4321 1236667899999999999 522389999999999999998
Q ss_pred H---HhcCCCCeEEEcCCCChhHH-HHHHHCCCE-------------EEEecCCC-----CCCCCHHHHHHhhcc----C
Q 025730 164 R---CVLDPGDKIVDCPPTFTMYE-FDAAVNGAA-------------VVKVPRKS-----DFSLNVELIADAVER----E 217 (249)
Q Consensus 164 ~---~~~~pGd~Vlv~~P~y~~~~-~~~~~~G~~-------------v~~v~~~~-----~~~id~e~l~~~i~~----~ 217 (249)
+ .+.++| +|++.+|+|..+. ......|.+ ++.++.+. ++.+|++++++++++ .
T Consensus 120 ~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (426)
T 1sff_A 120 KIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPE 198 (426)
T ss_dssp HHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCC
Confidence 8 677776 8999999997544 455556653 67777543 234789999998863 3
Q ss_pred CceEEEEc-CCCCccc-cCCChH--HHHHHHhhhhC
Q 025730 218 KPKCIFLT-SPNNPDG-RFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 218 ~~k~i~l~-~PnNPTG-~~~~~~--e~i~~i~~~~~ 249 (249)
++++|+++ +++| || .+.+.+ +.+.++|++||
T Consensus 199 ~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~ 233 (426)
T 1sff_A 199 DIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHG 233 (426)
T ss_dssp GEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcC
Confidence 56777764 5678 99 454444 44777888875
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-14 Score=127.13 Aligned_cols=155 Identities=10% Similarity=0.132 Sum_probs=108.2
Q ss_pred CCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC-----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 94 PEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP-----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 94 ~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~-----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
+...+|+..+. ++++ .++.+.+++.+ +... ..|+.....++++.+++++++++++|++|+|+++++.++++
T Consensus 42 g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~ 121 (429)
T 1s0a_A 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMK 121 (429)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Confidence 34578888887 4565 57888888865 3211 24554446789999999999889999999999999999988
Q ss_pred Hhc---C----CCCeEEEcCCCChhHHHHHHH-C---------------CCEEEEecCC---CCC-CCCHHHHHHhhcc-
Q 025730 165 CVL---D----PGDKIVDCPPTFTMYEFDAAV-N---------------GAAVVKVPRK---SDF-SLNVELIADAVER- 216 (249)
Q Consensus 165 ~~~---~----pGd~Vlv~~P~y~~~~~~~~~-~---------------G~~v~~v~~~---~~~-~id~e~l~~~i~~- 216 (249)
.+. + |||+|++.+|+|..+...+.. . +...+.++.. ..+ .+|++++++++++
T Consensus 122 ~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 201 (429)
T 1s0a_A 122 MALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH 201 (429)
T ss_dssp HHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH
T ss_pred HHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC
Confidence 653 2 699999999999865443322 1 2334433321 134 4899999999873
Q ss_pred -CCceEEEEcCC--CCccccCCChH---HHHHHHhhhhC
Q 025730 217 -EKPKCIFLTSP--NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 217 -~~~k~i~l~~P--nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.++++| +++| |||||.++++. +.+.++|++||
T Consensus 202 ~~~~~~v-i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~ 239 (429)
T 1s0a_A 202 RHEIAAV-IIEPIVQGAGGMRMYHPEWLKRIRKICDREG 239 (429)
T ss_dssp TTTEEEE-EECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred CCCEEEE-EEeecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 345555 4666 58999765433 45777888875
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-14 Score=127.69 Aligned_cols=124 Identities=19% Similarity=0.148 Sum_probs=103.3
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCC--EEEeCCHHHHHHHHHHHhcCCCCeEEEcC-CCChhHHHHHH----------HC
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDH--ILVGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAA----------VN 190 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~--I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~-P~y~~~~~~~~----------~~ 190 (249)
+.|++.+..++++.+++++|.+... ++++ |+++++..++.+++++||+|++.. |.|..+...+. ..
T Consensus 60 ~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~ 138 (431)
T 3ht4_A 60 YGYDDIGRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEY 138 (431)
T ss_dssp TCCSCHHHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGG
T ss_pred CCCChhhHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHc
Confidence 5566667788999999999975432 2345 668999999999999999999998 99998876553 37
Q ss_pred CCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEc-CCCCccccCCChHH--HHHHHhhh--hC
Q 025730 191 GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLT-SPNNPDGRFSWTSS--WIWGISSE--HN 249 (249)
Q Consensus 191 G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~-~PnNPTG~~~~~~e--~i~~i~~~--~~ 249 (249)
|++++.++.++++.+|+++++++++ .++++|+++ +||||+|...+..+ .+.++|++ +|
T Consensus 139 G~~~~~v~~~~~~~~d~e~l~~~l~-~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~ 201 (431)
T 3ht4_A 139 NIGYNAVPLTEGGLVDFEAVAAAIH-SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPD 201 (431)
T ss_dssp TCEEEECCBCTTSSBCHHHHHHHCC-TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTT
T ss_pred CCEEEEeCCCCCCCcCHHHHHhhcC-CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCC
Confidence 9999999987788999999999998 689999999 59999999887764 47788888 64
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=122.17 Aligned_cols=120 Identities=15% Similarity=0.093 Sum_probs=93.0
Q ss_pred CCCC-CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCC--eEEEcCCCChhH-H--HHHHHCCCEEEEe
Q 025730 124 YIYP-DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGD--KIVDCPPTFTMY-E--FDAAVNGAAVVKV 197 (249)
Q Consensus 124 ~~Yp-~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd--~Vlv~~P~y~~~-~--~~~~~~G~~v~~v 197 (249)
..|+ +++..+|+++++++++.+ ..++++|+++++.+++++++.+|| .|+++.++|..+ . ......|++++.+
T Consensus 41 ~~y~~~~~~~~l~~~la~~~~~~--~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v 118 (357)
T 3lws_A 41 DQYGTGAIIEPFEQKFADVLGMD--DAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILV 118 (357)
T ss_dssp EETTEETTHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEEC
T ss_pred ccccCChHHHHHHHHHHHHhCCC--cEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhccCcEEEEe
Confidence 4575 467899999999999973 345557778899999999999998 677766665432 2 2455679999999
Q ss_pred cCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcc-ccCCChH--HHHHHHhhhhC
Q 025730 198 PRKSDFSLNVELIADAVEREKPKCIFLTSPNNPD-GRFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 198 ~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPT-G~~~~~~--e~i~~i~~~~~ 249 (249)
+. +++.+|+++++++. ++++|++++||||| |.+++.+ +.+.++|++||
T Consensus 119 ~~-~~~~~d~~~l~~~~---~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~ 169 (357)
T 3lws_A 119 GA-ADRLMTLDEIKALP---DIACLLLELPQREIGGVAPAFSELETISRYCRERG 169 (357)
T ss_dssp SC-TTSCCCHHHHHTCC---SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTT
T ss_pred cC-CCCCcCHHHHhcCc---CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcC
Confidence 85 55789999999873 38999999999998 9987765 44778898875
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=124.87 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=95.5
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHH----HHCCCEEEEe-cCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKV-PRKS 201 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v-~~~~ 201 (249)
+++...+|++++++++|.+ +.|++ +++++++.+++.+++++||+|+++.++|..+...+ +..|++++.+ +.+
T Consensus 56 ~~~~~~~l~~~la~~~g~~-~~v~~-~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 132 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEGGK-AALAT-ASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE- 132 (421)
T ss_dssp BCHHHHHHHHHHHHHHTCS-EEEEE-SSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-
T ss_pred CChHHHHHHHHHHHHhCCC-ceEEe-cCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-
Confidence 3444688999999999965 34554 55599999999999999999999999998765554 6789999999 753
Q ss_pred CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 202 ~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++++++++ .++++|++++|+||||.+.+ .+.+.++|++||
T Consensus 133 ----d~~~l~~~i~-~~~~~v~~~~~~n~~G~~~~-l~~i~~~a~~~g 174 (421)
T 2ctz_A 133 ----RPEEFLALTD-EKTRAWWVESIGNPALNIPD-LEALAQAAREKG 174 (421)
T ss_dssp ----CHHHHHHHCC-TTEEEEEEESSCTTTCCCCC-HHHHHHHHHHHT
T ss_pred ----CHHHHHHhhc-cCCeEEEEECCCCCCCcccC-HHHHHHHHHHcC
Confidence 8999999998 68999999999999999964 777888999875
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-14 Score=130.65 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=111.0
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCC--CCCCc-------ChHH----HHHHHHHHcCCCCCC----EEEeCCHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPY--IYPDP-------ESRR----LRAALAKDSGLESDH----ILVGCGAD 156 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~--~Yp~~-------g~~~----lr~~la~~~~~~~~~----I~vt~Ga~ 156 (249)
.+.|+|..++++ +++.+++++.+ +...+ +||.. ...+ +++.+++++|+++++ |++++|+
T Consensus 44 ~~~i~L~a~e~~--~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs- 120 (483)
T 1rv3_A 44 RVGLELIASENF--ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS- 120 (483)
T ss_dssp HSSEECCTTCCC--CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-
T ss_pred hcCeEEEcCCCC--CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-
Confidence 356999888875 67899999976 43322 34421 1234 448888889987654 8888888
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCChhHHH--------HHHHCC--CEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEc
Q 025730 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEF--------DAAVNG--AAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLT 225 (249)
Q Consensus 157 ~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~--------~~~~~G--~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~ 225 (249)
+++..++.++++|||+|++++|+|..+.. .+...| .+++.++.+ +++.+|+++|++++++.++|+|++
T Consensus 121 ~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~- 199 (483)
T 1rv3_A 121 PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA- 199 (483)
T ss_dssp HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-
T ss_pred HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-
Confidence 88888889999999999999999875532 122334 566666544 568899999999997568999999
Q ss_pred CCCCccccCCChHHHHHHHhhhhC
Q 025730 226 SPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 226 ~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+++||+ .+ .+.+.+.+||+++|
T Consensus 200 ~~sn~~-~~-~dl~~i~~ia~~~g 221 (483)
T 1rv3_A 200 GTSCYS-RN-LDYGRLRKIADENG 221 (483)
T ss_dssp CCSSCC-SC-CCHHHHHHHHHHTT
T ss_pred eCCcCC-Cc-CCHHHHHHHHHHcC
Confidence 999998 66 46778889999886
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-13 Score=121.94 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=95.7
Q ss_pred CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh-HHHH----HHHCCCEEEEec
Q 025730 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM-YEFD----AAVNGAAVVKVP 198 (249)
Q Consensus 124 ~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~-~~~~----~~~~G~~v~~v~ 198 (249)
.+|+++...+|++.++++++.+ ++++++++++++.. +..++++||+|+++.|+|.. +... +...|.+++.++
T Consensus 62 ~r~~~p~~~~l~~~la~l~g~~--~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 138 (400)
T 3nmy_A 62 SRTHNPTRFAYERCVAALEGGT--RAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138 (400)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHhCCC--CEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence 3456666789999999999854 56777777999998 56789999999999999984 4333 334699999998
Q ss_pred CCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 199 RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 199 ~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+ |+++++++++ +++++|++++|+||||.++ +.+.+.++|++||
T Consensus 139 ~~-----d~~~l~~~i~-~~~~~v~~e~~~np~G~~~-~l~~i~~la~~~g 182 (400)
T 3nmy_A 139 LT-----DPAAFKAAIR-ADTKMVWIETPTNPMLKLV-DIAAIAVIARKHG 182 (400)
T ss_dssp TT-----SHHHHHHHCC-TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHTT
T ss_pred CC-----CHHHHHHHhc-cCCCEEEEECCCCCCCeee-cHHHHHHHHHHcC
Confidence 64 8999999998 6899999999999999996 5777888999886
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=124.49 Aligned_cols=148 Identities=15% Similarity=0.144 Sum_probs=98.2
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCC------CcC----hHH-HHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF--PYIYP------DPE----SRR-LRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp------~~g----~~~-lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
+.++|..++++. ++.+.+++.+ +.. ...|+ ... ..+ .++.++++++.+.. .++++|+++++..
T Consensus 33 ~~i~l~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~v~~~~Gs~a~~~ 109 (425)
T 3ecd_A 33 SQVELIASENIV--SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHA-NVQPHSGAQANGA 109 (425)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHH
T ss_pred cceeeecccCCC--CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCc-eeecCchHHHHHH
Confidence 458998888876 7899999876 422 12222 111 122 33667788887543 2457888899999
Q ss_pred HHHHhcCCCCeEEEcCCCChh---HHHHHHHCCC--EEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTM---YEFDAAVNGA--AVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~---~~~~~~~~G~--~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
++.+++++||+|+++.|+|.. +.......|. +++.++.+ +++.+|++++++++++.++++|++++|+||+.
T Consensus 110 al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~--- 186 (425)
T 3ecd_A 110 VMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRK--- 186 (425)
T ss_dssp HHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCCCSC---
T ss_pred HHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccCCCc---
Confidence 999999999999999999976 3333223444 56666654 45889999999999755899999999999743
Q ss_pred ChHHHHHHHhhhhC
Q 025730 236 WTSSWIWGISSEHN 249 (249)
Q Consensus 236 ~~~e~i~~i~~~~~ 249 (249)
.+.+.+.++|++||
T Consensus 187 ~~l~~i~~l~~~~~ 200 (425)
T 3ecd_A 187 LDFARFRAIADSVG 200 (425)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcC
Confidence 34467888999886
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=124.32 Aligned_cols=147 Identities=16% Similarity=0.094 Sum_probs=102.7
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCCC------c-C----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LKF--PYIYPD------P-E----SRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp~------~-g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
.+.+..+++. .++.+.+++.+ +.. ...||. . . ....++.+++++++++++|++++| ++++..+
T Consensus 32 ~~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sG-s~a~~~a 108 (420)
T 3gbx_A 32 HIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSG-SQANFAV 108 (420)
T ss_dssp SEECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHH
T ss_pred ceeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCc-HHHHHHH
Confidence 4777777776 57899999876 422 123332 1 1 123446888889988777777777 7899999
Q ss_pred HHHhcCCCCeEEEcCCCChhHH---HH--HHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYE---FD--AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~---~~--~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
+.+++++||+|+++.|+|..+. .. ....+...+.++.+.++.+|++++++++++.++++|++++||||+ . .+
T Consensus 109 ~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~--~-~~ 185 (420)
T 3gbx_A 109 YTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYSG--V-VD 185 (420)
T ss_dssp HHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCCS--C-CC
T ss_pred HHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccCC--c-cC
Confidence 9999999999999999997632 11 112345666667667788999999999985579999999999974 4 35
Q ss_pred HHHHHHHhhhhC
Q 025730 238 SSWIWGISSEHN 249 (249)
Q Consensus 238 ~e~i~~i~~~~~ 249 (249)
.+.+.++|++||
T Consensus 186 l~~l~~l~~~~~ 197 (420)
T 3gbx_A 186 WAKMREIADSIG 197 (420)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 677888999886
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.44 E-value=7e-13 Score=121.97 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEeCCHHH-HHHHHHHHhcC--CCCeEEEcCCCChhHHHHHHHCCCEEEEecC---CCCCCC
Q 025730 132 RRLRAALAKDSGLESDHILVGCGADE-LIDLIMRCVLD--PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR---KSDFSL 205 (249)
Q Consensus 132 ~~lr~~la~~~~~~~~~I~vt~Ga~~-~l~~~~~~~~~--pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~---~~~~~i 205 (249)
.++++.+++++|++++ +++|+|+++ ++.+++.++.. +|+.|+++.++|..+...++..|++++.++. ++++.+
T Consensus 136 ~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~ 214 (456)
T 2z67_A 136 NKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYV 214 (456)
T ss_dssp HHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEEC
T ss_pred HHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCCc
Confidence 4588999999998877 999999995 55444444333 6788999999999999999999999999986 667889
Q ss_pred CHHHHHHhh-cc---CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 206 NVELIADAV-ER---EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 206 d~e~l~~~i-~~---~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++|++++ +. .++.+|++++||||||.+ .+.+.+.++|+++|
T Consensus 215 d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i-~~l~~I~~la~~~g 261 (456)
T 2z67_A 215 PVEDIENAIKKEIELGNRPCVLSTLTFFPPRNS-DDIVEIAKICENYD 261 (456)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCC-CCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCc-CCHHHHHHHHHHcC
Confidence 999999999 42 477888889999999999 57778888999875
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=124.99 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=99.7
Q ss_pred CCCCeeeccCC--CCCCCC-CHHHHHHHHh-ccCC-----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYGP-PPEVREALGQ-LKFP-----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~~-p~~v~~al~~-~~~~-----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...+|+..+ .++++. ++.+.+++.+ +... ..|++....+|++.++++++.+.++|++|+|+++++..++
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al 106 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAV 106 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHH
Confidence 34567999887 667764 7888888765 3221 1344445678899999999888899999999999999999
Q ss_pred HHhc--------CCCCeEEEcCCCChhHHHHHHHCCC---------------EEEEecCCCC---CCCCHHHHHHhhcc-
Q 025730 164 RCVL--------DPGDKIVDCPPTFTMYEFDAAVNGA---------------AVVKVPRKSD---FSLNVELIADAVER- 216 (249)
Q Consensus 164 ~~~~--------~pGd~Vlv~~P~y~~~~~~~~~~G~---------------~v~~v~~~~~---~~id~e~l~~~i~~- 216 (249)
+.+. ..+|+|++.+|+|..+...+...+. .+..++..+. +..|+++|++++++
T Consensus 107 ~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 186 (430)
T 3i4j_A 107 KLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLERE 186 (430)
T ss_dssp HHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhc
Confidence 9876 3478999999999887765544433 2223332222 12366888888863
Q ss_pred -CCceEEEEcCC-CC-ccccCCChH---HHHHHHhhhhC
Q 025730 217 -EKPKCIFLTSP-NN-PDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 217 -~~~k~i~l~~P-nN-PTG~~~~~~---e~i~~i~~~~~ 249 (249)
.+...+++++| || ++|...++. +.+.++|++||
T Consensus 187 ~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~ 225 (430)
T 3i4j_A 187 GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAG 225 (430)
T ss_dssp CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcC
Confidence 13334455565 56 888754443 45778899886
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-13 Score=122.18 Aligned_cols=142 Identities=16% Similarity=0.120 Sum_probs=106.3
Q ss_pred eeccCCCCCCCCCHHHHHHHHh---ccCCCCCC---CcC----hHHHHHHHHHHcCCCCCCEEEeCCHH---HHHHHHHH
Q 025730 98 VKIDANENPYGPPPEVREALGQ---LKFPYIYP---DPE----SRRLRAALAKDSGLESDHILVGCGAD---ELIDLIMR 164 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~---~~~~~~Yp---~~g----~~~lr~~la~~~~~~~~~I~vt~Ga~---~~l~~~~~ 164 (249)
..++.+.++...|+.+.+.+.. ......|. ..+ ..++++.+++++|++++++++++|++ +++.+++.
T Consensus 67 ~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~ 146 (438)
T 1wyu_A 67 AFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR 146 (438)
T ss_dssp CCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH
T ss_pred cccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh
Confidence 4677777777778777555422 12223331 122 45889999999999888899999999 55544432
Q ss_pred HhcCCCCeEEEcCCCChhHHHHH----HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDA----AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~----~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~ 240 (249)
+++||+|+++.++|..+...+ +..|++++.++. +++.+|+++ ++ .++++|++++| ||||.+. +.+.
T Consensus 147 --~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~-~~t~~v~i~~p-n~tG~~~-~l~~ 216 (438)
T 1wyu_A 147 --ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VG-EEVGAVVVQNP-NFLGALE-DLGP 216 (438)
T ss_dssp --HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CC-TTEEEEEEESS-CTTSBCC-CHHH
T ss_pred --cCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hC-CCeEEEEEECC-CCCeEEe-cHHH
Confidence 578999999999998776444 558999999997 456778766 55 68999999999 9999995 6677
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.++|+++|
T Consensus 217 i~~la~~~g 225 (438)
T 1wyu_A 217 FAEAAHGAG 225 (438)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 888898875
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=120.27 Aligned_cols=137 Identities=13% Similarity=0.009 Sum_probs=108.2
Q ss_pred HHHHHHHh-cc-CCCCC-CCcChHHHHHHHH----HHcCCC--CCCEEEeCCHHHHHHHHHHHhcC--------------
Q 025730 112 EVREALGQ-LK-FPYIY-PDPESRRLRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLD-------------- 168 (249)
Q Consensus 112 ~v~~al~~-~~-~~~~Y-p~~g~~~lr~~la----~~~~~~--~~~I~vt~Ga~~~l~~~~~~~~~-------------- 168 (249)
.+.+.+.. +. ....| ..++..++++.++ +++|.+ .+++++|+|+++++..++.+..+
T Consensus 111 ~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~ 190 (511)
T 3vp6_A 111 LAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAV 190 (511)
T ss_dssp HHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGS
T ss_pred HHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccC
Confidence 34455554 32 23456 3455666666554 456876 46899999999999988876644
Q ss_pred CCCeEEEcCCCChhHHHHHHHCCC---EEEEecCCCCCCCCHHHHHHhhccCC-----ceEEEEcCCCCccccCCChHHH
Q 025730 169 PGDKIVDCPPTFTMYEFDAAVNGA---AVVKVPRKSDFSLNVELIADAVEREK-----PKCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 169 pGd~Vlv~~P~y~~~~~~~~~~G~---~v~~v~~~~~~~id~e~l~~~i~~~~-----~k~i~l~~PnNPTG~~~~~~e~ 240 (249)
+++.|+++.++|..+...++..|. +++.++.+.++.+|+++|++++++.+ +++|++++|+||||.+ .+.+.
T Consensus 191 ~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~v-d~l~~ 269 (511)
T 3vp6_A 191 PKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF-DPIQE 269 (511)
T ss_dssp CCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCB-CCHHH
T ss_pred CCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccc-ccHHH
Confidence 578999999999999999999998 99999988889999999999997321 8899999999999999 67788
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+..+|++||
T Consensus 270 I~~ia~~~~ 278 (511)
T 3vp6_A 270 IADICEKYN 278 (511)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 999999986
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-12 Score=116.05 Aligned_cols=149 Identities=15% Similarity=0.242 Sum_probs=110.3
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..+. ++++ .++.+.+++.+ +... ..|+.....+|++.++++++ .++|++|+|+++++.++++
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~v~~~~ggteA~~~al~ 132 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATF--AERVLFMNSGTEANETAFK 132 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCC--CCeEEEeCCHHHHHHHHHH
Confidence 345678998773 5554 57888888875 3221 23544456789999999988 5799999999999999999
Q ss_pred HhcC-------CC-CeEEEcCCCChhHH-HHHHHCCCE------------EEEecCCCCCCCCHHHHHHhhccCCceEEE
Q 025730 165 CVLD-------PG-DKIVDCPPTFTMYE-FDAAVNGAA------------VVKVPRKSDFSLNVELIADAVEREKPKCIF 223 (249)
Q Consensus 165 ~~~~-------pG-d~Vlv~~P~y~~~~-~~~~~~G~~------------v~~v~~~~~~~id~e~l~~~i~~~~~k~i~ 223 (249)
.+.. +| ++|++.+|+|..+. ......|.+ +..++. .|+++++++++ .++++|+
T Consensus 133 ~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~le~~i~-~~~~~vi 206 (420)
T 2pb2_A 133 LARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-----NDLHAVKAVMD-DHTCAVV 206 (420)
T ss_dssp HHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-----TCHHHHHHHCC-TTEEEEE
T ss_pred HHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-----CCHHHHHHHhc-cCceEEE
Confidence 8765 77 59999999997543 334445543 555553 28999999998 6899999
Q ss_pred EcCCCCcccc-CCChH--HHHHHHhhhhC
Q 025730 224 LTSPNNPDGR-FSWTS--SWIWGISSEHN 249 (249)
Q Consensus 224 l~~PnNPTG~-~~~~~--e~i~~i~~~~~ 249 (249)
+++++|++|. +++.+ +.+.++|++||
T Consensus 207 ~~p~~~~gG~~~~~~~~l~~l~~l~~~~g 235 (420)
T 2pb2_A 207 VEPIQGEGGVQAATPEFLKGLRDLCDEHQ 235 (420)
T ss_dssp ECSEETTTTSEECCHHHHHHHHHHHHHTT
T ss_pred EeCCcCCCCeecCCHHHHHHHHHHHHHcC
Confidence 8888888885 45554 55788999886
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=121.05 Aligned_cols=116 Identities=11% Similarity=-0.009 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCCC--CCCEEEeCCHHHHHHHHHHHhcC--------CC-----C-eEEEcCCCChhHHHHHHHCCC---E
Q 025730 133 RLRAALAKDSGLE--SDHILVGCGADELIDLIMRCVLD--------PG-----D-KIVDCPPTFTMYEFDAAVNGA---A 193 (249)
Q Consensus 133 ~lr~~la~~~~~~--~~~I~vt~Ga~~~l~~~~~~~~~--------pG-----d-~Vlv~~P~y~~~~~~~~~~G~---~ 193 (249)
++++.+++++|++ .+++++|+|+++++.+++.++.. +| + .|+++.++|..+...++..|. +
T Consensus 136 ~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~ 215 (504)
T 2okj_A 136 ITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDN 215 (504)
T ss_dssp HHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCccc
Confidence 3456668888987 77999999999999999887642 56 6 799999999999999888877 8
Q ss_pred EEEecCCCCCCCCHHHHHHhhccC-----CceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 194 VVKVPRKSDFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 194 v~~v~~~~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++.+|.++++.+|+++|++++++. ++++|++++|+||||.+ .+.+.+..+|++||
T Consensus 216 v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i-~~l~~I~~la~~~g 275 (504)
T 2okj_A 216 VILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF-DPIQEIADICEKYN 275 (504)
T ss_dssp EEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCB-CCHHHHHHHHHHHT
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCc-CCHHHHHHHHHHcC
Confidence 999998778999999999999732 58999999999999998 57778889999886
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=115.19 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=110.9
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...+|+..| .++++ .++.+.+++.+ +... ..|+++...++++.++++++ .++|++|+|+++++..+++
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~ea~~~al~ 111 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA--LERVFFTNSGTESIEGAMK 111 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHH
Confidence 34568999988 66776 46888888875 3321 22444456789999999988 6899999999999999998
Q ss_pred Hhc-------CCCCeEEEcCCCChhHHHHHHHCC-------------CEEEEecCCCCCCCCHHHHHHhhccCCceEEEE
Q 025730 165 CVL-------DPGDKIVDCPPTFTMYEFDAAVNG-------------AAVVKVPRKSDFSLNVELIADAVEREKPKCIFL 224 (249)
Q Consensus 165 ~~~-------~pGd~Vlv~~P~y~~~~~~~~~~G-------------~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l 224 (249)
.+. .++|+|++.+|+|..+...+...+ ..+..++.+ |+++++++++ .++++|++
T Consensus 112 ~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~-~~~~~v~~ 185 (395)
T 3nx3_A 112 TARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVN-EKTCAIIL 185 (395)
T ss_dssp HHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCC-TTEEEEEE
T ss_pred HHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhcc-CCeEEEEE
Confidence 765 457999999999976554433322 345555432 7999999997 67889988
Q ss_pred cCCCCccccCCChH---HHHHHHhhhhC
Q 025730 225 TSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 225 ~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+.++|++|.+.++. +.+.++|++||
T Consensus 186 ~~~~~~~G~~~~~~~~l~~l~~l~~~~~ 213 (395)
T 3nx3_A 186 ESVQGEGGINPANKDFYKALRKLCDEKD 213 (395)
T ss_dssp ESEECTTSCEECCHHHHHHHHHHHHHHT
T ss_pred eCccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 88888888875543 44778898886
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-13 Score=124.02 Aligned_cols=116 Identities=12% Similarity=0.030 Sum_probs=94.6
Q ss_pred CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCC-
Q 025730 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSD- 202 (249)
Q Consensus 126 Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~- 202 (249)
++.....++++.+++ +|.+ +++++|+|+++++.+++++++++||+|+++.|+|..+...+...|++++.++. +++
T Consensus 54 ~~~~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~ 131 (446)
T 2x3l_A 54 HPEEVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLT 131 (446)
T ss_dssp SCSSHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTT
T ss_pred CcchHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeecccc
Confidence 355567899999999 9986 78999999999999999999999999999999999999888889999999986 554
Q ss_pred ---CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 ---FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 ---~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.+|++++ +. .++++|++++| |+||.++ +.+.+.++|++||
T Consensus 132 ~~~~~~d~~~l---~~-~~~~~v~~~~~-n~~G~~~-~l~~I~~l~~~~~ 175 (446)
T 2x3l_A 132 NHYNKVNLSRL---NN-DGHKLVVLTYP-NYYGETF-NVEEVIKSLHQLN 175 (446)
T ss_dssp SSEEEEEC-----------CCEEEEESS-CTTSCCC-CHHHHHHHHHHTT
T ss_pred CcCCCCCHHHH---cC-CCceEEEEECC-CCCeEec-CHHHHHHHHHhcC
Confidence 56788887 33 67999999995 5599996 4667888898875
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=117.63 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=106.7
Q ss_pred CCCeeeccCCC--CCCCC-CHHHHHHHHh-ccCC----C-CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 94 PEDIVKIDANE--NPYGP-PPEVREALGQ-LKFP----Y-IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 94 ~~~~I~L~~~~--~~~~~-p~~v~~al~~-~~~~----~-~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
+...+|+..+. ++++. ++.+.+++.+ +... . .|+.....++++.++++++.++++|++|+|++++++++++
T Consensus 49 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~ 128 (449)
T 3a8u_X 49 GRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVK 128 (449)
T ss_dssp CCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHH
Confidence 34578887665 45543 6899999876 4332 1 4554446789999999988778899999999999999998
Q ss_pred HhcC--------CCCeEEEcCCCChhHHH-HHHHCCC------------EEEEecCCCCC-----CCC--------HHHH
Q 025730 165 CVLD--------PGDKIVDCPPTFTMYEF-DAAVNGA------------AVVKVPRKSDF-----SLN--------VELI 210 (249)
Q Consensus 165 ~~~~--------pGd~Vlv~~P~y~~~~~-~~~~~G~------------~v~~v~~~~~~-----~id--------~e~l 210 (249)
.+.. +||+|++.+|+|..+.. .....|. .+..++....+ ++| +++|
T Consensus 129 ~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~l 208 (449)
T 3a8u_X 129 MVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADEL 208 (449)
T ss_dssp HHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHH
Confidence 8764 67999999999975433 3343331 23444432211 256 9999
Q ss_pred HHhhcc---CCceEEEEcCCC-CccccCCCh---HHHHHHHhhhhC
Q 025730 211 ADAVER---EKPKCIFLTSPN-NPDGRFSWT---SSWIWGISSEHN 249 (249)
Q Consensus 211 ~~~i~~---~~~k~i~l~~Pn-NPTG~~~~~---~e~i~~i~~~~~ 249 (249)
++++++ .++++|+ ++|+ |+||.+.++ .+.+.++|++||
T Consensus 209 e~~l~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~~ 253 (449)
T 3a8u_X 209 LKLIELHDASNIAAVF-VEPLAGSAGVLVPPEGYLKRNREICNQHN 253 (449)
T ss_dssp HHHHHHHCGGGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCEEEEE-EcCccCCCCCccCCHHHHHHHHHHHHHhC
Confidence 999863 2455554 6665 679976543 355788899875
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-12 Score=117.94 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=104.3
Q ss_pred CHHHHHHHHh-ccC-CCCCC-CcChHHHHHH----HHHHcCCCC---------CCEEEeCCHHHHHHHHHHHhcCC----
Q 025730 110 PPEVREALGQ-LKF-PYIYP-DPESRRLRAA----LAKDSGLES---------DHILVGCGADELIDLIMRCVLDP---- 169 (249)
Q Consensus 110 p~~v~~al~~-~~~-~~~Yp-~~g~~~lr~~----la~~~~~~~---------~~I~vt~Ga~~~l~~~~~~~~~p---- 169 (249)
+..+.+.+.. +.. ...|. .++..++++. +++++|++. .++++|+|+++++.+++.+...+
T Consensus 87 ~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~ 166 (486)
T 1js3_A 87 PAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRR 166 (486)
T ss_dssp HHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhh
Confidence 3445566655 222 23442 3344555554 456668764 35899999999999888765321
Q ss_pred -----CC--------e--EEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCc------eEEEEcCCC
Q 025730 170 -----GD--------K--IVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKP------KCIFLTSPN 228 (249)
Q Consensus 170 -----Gd--------~--Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~------k~i~l~~Pn 228 (249)
|| + |+++.++|..+...++..|++++.||.++++.+|+++|+++++ .++ .+|++++|+
T Consensus 167 ~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~-~~~~~g~~p~~vv~~~~~ 245 (486)
T 1js3_A 167 LQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALE-RDKAAGLIPFFVVATLGT 245 (486)
T ss_dssp HHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHH-HHHHTTCEEEEEEEEBSC
T ss_pred hhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHH-HHHhCCCCceEEEEeCCC
Confidence 43 4 7889999999999999999999999988889999999999997 344 388899999
Q ss_pred CccccCCChHHHHHHHhhhhC
Q 025730 229 NPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 229 NPTG~~~~~~e~i~~i~~~~~ 249 (249)
||||.+ .+.+.+..+|++||
T Consensus 246 n~tG~~-~~l~~I~~la~~~~ 265 (486)
T 1js3_A 246 TSCCSF-DNLLEVGPICHEED 265 (486)
T ss_dssp TTTCCB-CCHHHHHHHHHHTT
T ss_pred CCCCCC-CCHHHHHHHHHHcC
Confidence 999988 77888999999986
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=119.60 Aligned_cols=117 Identities=15% Similarity=0.031 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhc-------C-CCC------eEEEcCCCChhHHHHHHHCCC---EE
Q 025730 132 RRLRAALAKDSGLESDHILVGCGADELIDLIMRCVL-------D-PGD------KIVDCPPTFTMYEFDAAVNGA---AV 194 (249)
Q Consensus 132 ~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~-------~-pGd------~Vlv~~P~y~~~~~~~~~~G~---~v 194 (249)
.++++.+++++|++.+++++|+|+++++.+++.++. + +|| +|+++.++|..+...++..|. ++
T Consensus 151 ~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v 230 (515)
T 2jis_A 151 EEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSV 230 (515)
T ss_dssp HHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred HHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcE
Confidence 457778899999988899999999999988887652 2 576 899999999999888888888 89
Q ss_pred EEecCCCCCCCCHHHHHHhhccC-----CceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 195 VKVPRKSDFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 195 ~~v~~~~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.+|.++++.+|+++|++++++. ++++|++++|+||||.+ .+.+.+..+|+++|
T Consensus 231 ~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i-~~l~~I~~la~~~g 289 (515)
T 2jis_A 231 RVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAF-DPLEAIADVCQRHG 289 (515)
T ss_dssp EEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB-CCHHHHHHHHHHHT
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCc-cCHHHHHHHHHHcC
Confidence 99998778999999999999731 48999999999999999 56778889999886
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.35 E-value=8.4e-12 Score=113.95 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=101.2
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..| .++++ .++.+.+++.+ +... ..|+.....+|++.++++++ .++|++++|+++++..+++
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~ 140 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYK 140 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCCHHHHHHHHHHHhhcC--CCeEEEeCCHHHHHHHHHH
Confidence 34567898875 45777 88999998876 3322 23444446789999999997 5789999999999999998
Q ss_pred Hhc---------CCC-CeEEEcCCCChhHHH-HHHHCC------------CEEEEecCCCCCCCCHHHHHHhhccCCceE
Q 025730 165 CVL---------DPG-DKIVDCPPTFTMYEF-DAAVNG------------AAVVKVPRKSDFSLNVELIADAVEREKPKC 221 (249)
Q Consensus 165 ~~~---------~pG-d~Vlv~~P~y~~~~~-~~~~~G------------~~v~~v~~~~~~~id~e~l~~~i~~~~~k~ 221 (249)
.+. .+| |+|++.+|+|..+.. .....| ..+..++. .|+++++++++..++++
T Consensus 141 ~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-----~d~~~le~~l~~~~~~~ 215 (433)
T 1z7d_A 141 LCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-----DDLEALEEELKDPNVCA 215 (433)
T ss_dssp HHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-----TCHHHHHHHHTSTTEEE
T ss_pred HHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCCCEEE
Confidence 753 478 999999999976543 223333 24445543 28999999994356777
Q ss_pred EEEcCCCCccccCC-Ch--HHHHHHHhhhhC
Q 025730 222 IFLTSPNNPDGRFS-WT--SSWIWGISSEHN 249 (249)
Q Consensus 222 i~l~~PnNPTG~~~-~~--~e~i~~i~~~~~ 249 (249)
|+++..+|++|.+. +. .+.+.++|++||
T Consensus 216 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 246 (433)
T 1z7d_A 216 FIVEPIQGEAGVIVPSDNYLQGVYDICKKYN 246 (433)
T ss_dssp EEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCccCCCHHHHHHHHHHHHHcC
Confidence 66544457789764 33 366888999886
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-12 Score=116.48 Aligned_cols=157 Identities=11% Similarity=0.119 Sum_probs=107.5
Q ss_pred CCCCeeeccCCCC--CCC-CCHHHHHHHHh-ccCCCCC-----CCcChHHHHHHHHHHcCCCC-CCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANEN--PYG-PPPEVREALGQ-LKFPYIY-----PDPESRRLRAALAKDSGLES-DHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~~--~~~-~p~~v~~al~~-~~~~~~Y-----p~~g~~~lr~~la~~~~~~~-~~I~vt~Ga~~~l~~~ 162 (249)
.+...+|+..+.+ +++ .++.+.+++.+ +.....| ++....+|++.++++++... ++|++|+|+++++..+
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~a 120 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAA 120 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHH
Confidence 3456899998876 455 77888888865 3332223 33345678888888886656 7999999999999999
Q ss_pred HHHh--cCCCCeEEEcCCCChhHHHHHHHCCCE-E--------------EEecCCCCCCC-----CHHHHHHhhc---cC
Q 025730 163 MRCV--LDPGDKIVDCPPTFTMYEFDAAVNGAA-V--------------VKVPRKSDFSL-----NVELIADAVE---RE 217 (249)
Q Consensus 163 ~~~~--~~pGd~Vlv~~P~y~~~~~~~~~~G~~-v--------------~~v~~~~~~~i-----d~e~l~~~i~---~~ 217 (249)
++.+ ..++++|++.+|+|..+...+...+.. . ..++.+..+.. |+++|+++++ ..
T Consensus 121 l~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 200 (439)
T 3dxv_A 121 YRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAG 200 (439)
T ss_dssp HHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCC
Confidence 9875 346688999999996544444333222 1 22333222222 6999999983 35
Q ss_pred CceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 218 KPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 218 ~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++++|+++.++|++|.+.+++ +.+.++|++||
T Consensus 201 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 235 (439)
T 3dxv_A 201 SIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHG 235 (439)
T ss_dssp CEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 678888888888899886544 55778899886
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=116.68 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=104.5
Q ss_pred CCCeeeccCCCC--CCC-CCHHHHHHHHh-ccC----CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 94 PEDIVKIDANEN--PYG-PPPEVREALGQ-LKF----PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 94 ~~~~I~L~~~~~--~~~-~p~~v~~al~~-~~~----~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
+...+|+..+.+ +++ .++.+.+++.+ +.. ...|+.....++++.+++++++++++|++|+|+++++..+++.
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~ 121 (433)
T 1zod_A 42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRM 121 (433)
T ss_dssp CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHH
Confidence 345788877654 444 37888888865 321 1345554567899999999998889999999999999999986
Q ss_pred hc--CCCCeEEEcCCCChhHHHHHHHC--------------CCEEEEecCC--CCCC--------CCHHHHHHhhcc---
Q 025730 166 VL--DPGDKIVDCPPTFTMYEFDAAVN--------------GAAVVKVPRK--SDFS--------LNVELIADAVER--- 216 (249)
Q Consensus 166 ~~--~pGd~Vlv~~P~y~~~~~~~~~~--------------G~~v~~v~~~--~~~~--------id~e~l~~~i~~--- 216 (249)
+. ..+|+|++.+|+|..+...+... |...+.++.. ..++ +|++++++++++
T Consensus 122 ~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 201 (433)
T 1zod_A 122 AKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSS 201 (433)
T ss_dssp HHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCC
T ss_pred HHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCC
Confidence 43 23589999999997554433321 3333333321 1122 369999999873
Q ss_pred CCceEEEEcCCC-CccccCCC-hH--HHHHHHhhhhC
Q 025730 217 EKPKCIFLTSPN-NPDGRFSW-TS--SWIWGISSEHN 249 (249)
Q Consensus 217 ~~~k~i~l~~Pn-NPTG~~~~-~~--e~i~~i~~~~~ 249 (249)
.++++|+ ++|+ ||||...+ .+ +.+.++|++||
T Consensus 202 ~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 237 (433)
T 1zod_A 202 GNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEARG 237 (433)
T ss_dssp SCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHHT
T ss_pred CCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhC
Confidence 3455554 6774 88996544 33 55788898875
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-12 Score=115.80 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=107.5
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCCc----Ch------HHHH-HHHHHHcCCCCCCEEE-eCCHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPDP----ES------RRLR-AALAKDSGLESDHILV-GCGADELID 160 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~~----g~------~~lr-~~la~~~~~~~~~I~v-t~Ga~~~l~ 160 (249)
+.|+|..++++. ++.+.+++.+ +. +...||.. +. .++. +.+++++|++. +.+ ++|+++++.
T Consensus 46 ~~i~l~~~~~~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~--~~v~~~sGs~a~~ 121 (447)
T 3h7f_A 46 DTLEMIASENFV--PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEF--ANVQPHSGAQANA 121 (447)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHH
T ss_pred CceeEecCCCCC--CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCc--eEEEeCCHHHHHH
Confidence 458998888765 7899999876 32 22234321 21 2333 78888889764 333 777788999
Q ss_pred HHHHHhcCCCCeEEEcCCCChhH-HH----HHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccC
Q 025730 161 LIMRCVLDPGDKIVDCPPTFTMY-EF----DAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234 (249)
Q Consensus 161 ~~~~~~~~pGd~Vlv~~P~y~~~-~~----~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~ 234 (249)
.++.+++++||+|++++|+|..+ .. .....+..++.++.+ +++.+|++++++++++.++++|++++|+||++.
T Consensus 122 ~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~- 200 (447)
T 3h7f_A 122 AVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL- 200 (447)
T ss_dssp HHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC-
T ss_pred HHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc-
Confidence 99999999999999999998652 11 111235667777754 557899999999996567899999999999987
Q ss_pred CChHHHHHHHhhhhC
Q 025730 235 SWTSSWIWGISSEHN 249 (249)
Q Consensus 235 ~~~~e~i~~i~~~~~ 249 (249)
+.+.+.++|++||
T Consensus 201 --~l~~i~~l~~~~g 213 (447)
T 3h7f_A 201 --DFAAFRSIADEVG 213 (447)
T ss_dssp --CHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHcC
Confidence 4577888999885
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-12 Score=116.03 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=104.2
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccC--CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKF--PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~--~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.+...+|+..+. ++++ .++.+.+++.+ +.. .+.||+....+|+++++++++ .+++|++|+|+++++..+++.+
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a 131 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVA 131 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHH
Confidence 356688998775 5665 47888888875 322 245777778899999999997 6889999999999999999876
Q ss_pred cC--CCCeEEEcCCCChhHHHHHHHCCC--------------------EEEEecCCCCCCCCHHHHHHhhcc--CCceEE
Q 025730 167 LD--PGDKIVDCPPTFTMYEFDAAVNGA--------------------AVVKVPRKSDFSLNVELIADAVER--EKPKCI 222 (249)
Q Consensus 167 ~~--pGd~Vlv~~P~y~~~~~~~~~~G~--------------------~v~~v~~~~~~~id~e~l~~~i~~--~~~k~i 222 (249)
.. ++|+|++.+|+|..+...+...+. .++.++. -|++++++++++ .++++|
T Consensus 132 ~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~v 206 (434)
T 3l44_A 132 RAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF-----NNVETLKEALDKWGHEVAAI 206 (434)
T ss_dssp HHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEE
T ss_pred HHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc-----ccHHHHHHHHHhCCCCEEEE
Confidence 54 679999999999765443322222 1222221 189999998863 234455
Q ss_pred EEcCCC-CccccCCCh---HHHHHHHhhhhC
Q 025730 223 FLTSPN-NPDGRFSWT---SSWIWGISSEHN 249 (249)
Q Consensus 223 ~l~~Pn-NPTG~~~~~---~e~i~~i~~~~~ 249 (249)
+ ++|+ |++|.+.++ .+.+.++|++||
T Consensus 207 i-~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 236 (434)
T 3l44_A 207 L-VEPIVGNFGIVEPKPGFLEKVNELVHEAG 236 (434)
T ss_dssp E-ECSSBCTTSCBCCCTTHHHHHHHHHHTTT
T ss_pred E-EcCCCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 4 5554 555665433 255788999886
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.3e-12 Score=113.82 Aligned_cols=155 Identities=11% Similarity=0.064 Sum_probs=109.2
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..| .++++ .++.+.+++.+ +... ..|+.....+|++.++++++.+.+ |++|+|++++++.+++
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~ 125 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFK 125 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHH
Confidence 45678999888 45554 46889888875 4322 224444467888899998887666 9999999999999999
Q ss_pred Hhc-----C---CCCeEEEcCCCChhHHHHHHHCCCE-------------EEEecCCCCCCC---C---------HHHHH
Q 025730 165 CVL-----D---PGDKIVDCPPTFTMYEFDAAVNGAA-------------VVKVPRKSDFSL---N---------VELIA 211 (249)
Q Consensus 165 ~~~-----~---pGd~Vlv~~P~y~~~~~~~~~~G~~-------------v~~v~~~~~~~i---d---------~e~l~ 211 (249)
.+. . ++|+|++.+|+|..+...+...+.. +..++....+.. | +++|+
T Consensus 126 ~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 205 (452)
T 3n5m_A 126 IARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVD 205 (452)
T ss_dssp HHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHH
Confidence 876 5 7899999999998766555544332 334442111111 1 89999
Q ss_pred Hhhc---cCCceEEEEcCC-CCccccCCChH---HHHHHHhhhhC
Q 025730 212 DAVE---REKPKCIFLTSP-NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 212 ~~i~---~~~~k~i~l~~P-nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++++ ..++++|+++.+ +| ||.++++. +.+.++|++||
T Consensus 206 ~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~ 249 (452)
T 3n5m_A 206 RVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHG 249 (452)
T ss_dssp HHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcC
Confidence 9886 245677777766 89 99876443 45788899886
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-11 Score=111.00 Aligned_cols=150 Identities=10% Similarity=0.020 Sum_probs=108.4
Q ss_pred CCCCeeeccCCCC--CCC-CCHHHHHHHHh-ccCC----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDANEN--PYG-PPPEVREALGQ-LKFP----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~~~--~~~-~p~~v~~al~~-~~~~----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..|.+ +++ .++.+.+++.+ +... ..|+.....++++.++++++ .++|++++|+++++..++.
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~ 151 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACK 151 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHhcC--CCEEEEeCCHHHHHHHHHH
Confidence 3456789988744 566 88999999876 3321 23444557899999999998 5789999999999999998
Q ss_pred Hhc---------CCC-CeEEEcCCCChhHH-HHHHHCC------------CEEEEecCCCCCCCCHHHHHHhhccCCceE
Q 025730 165 CVL---------DPG-DKIVDCPPTFTMYE-FDAAVNG------------AAVVKVPRKSDFSLNVELIADAVEREKPKC 221 (249)
Q Consensus 165 ~~~---------~pG-d~Vlv~~P~y~~~~-~~~~~~G------------~~v~~v~~~~~~~id~e~l~~~i~~~~~k~ 221 (249)
.+. .+| |+|++.+|+|..+. ......| ..++.++. .|++++++++++.++++
T Consensus 152 ~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-----~d~~~le~~l~~~~~~~ 226 (439)
T 2oat_A 152 LARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-----NDLPALERALQDPNVAA 226 (439)
T ss_dssp HHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-----SCHHHHHHHTTSTTEEE
T ss_pred HHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-----CCHHHHHHHhCCCCEEE
Confidence 764 367 89999999997543 3333334 45666664 28999999995356766
Q ss_pred EEEcCCCCccccCCC---hHHHHHHHhhhhC
Q 025730 222 IFLTSPNNPDGRFSW---TSSWIWGISSEHN 249 (249)
Q Consensus 222 i~l~~PnNPTG~~~~---~~e~i~~i~~~~~ 249 (249)
|+++..+|++|.+.. ..+.+.++|++||
T Consensus 227 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 257 (439)
T 2oat_A 227 FMVEPIQGEAGVVVPDPGYLMGVRELCTRHQ 257 (439)
T ss_dssp EEECSSBTTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 664444567897643 3366888999986
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-12 Score=121.62 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=99.1
Q ss_pred cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC-CCC---
Q 025730 129 PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFS--- 204 (249)
Q Consensus 129 ~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~--- 204 (249)
....++++.+++++|.+ +.+++++|+++++..++.++++|||+|++..|+|..+...+...|++++.++.+. +++
T Consensus 205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~~g 283 (755)
T 2vyc_A 205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIG 283 (755)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSCBC
T ss_pred cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCcccccc
Confidence 34678999999999975 4688999999999999999999999999999999988877888999999998643 233
Q ss_pred -C-----CHHHHHHhhcc-CCce--------EEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 205 -L-----NVELIADAVER-EKPK--------CIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 205 -i-----d~e~l~~~i~~-~~~k--------~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+ |++++++++++ .++| ++++||| ||+|.+. +.+.+.++|++||
T Consensus 284 ~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~-dl~~I~~ia~~~~ 341 (755)
T 2vyc_A 284 PIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCY-NAKEAQDLLEKTS 341 (755)
T ss_dssp CCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEE-CHHHHHHHHTTTC
T ss_pred ccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceec-CHHHHHHHHHHcC
Confidence 5 99999999964 2444 9999999 6999995 5667788899875
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-12 Score=118.43 Aligned_cols=154 Identities=13% Similarity=0.127 Sum_probs=109.2
Q ss_pred CeeeccCC--CCCCC-CCHHHHHHHHh-ccC---C--CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 96 DIVKIDAN--ENPYG-PPPEVREALGQ-LKF---P--YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 96 ~~I~L~~~--~~~~~-~p~~v~~al~~-~~~---~--~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
..||+..| .+.++ .++.+.+++.+ +.. . ..|+.....+|++.++++++...++|++++|++++++.+++.+
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a 155 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMA 155 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHH
Confidence 67888877 56665 57888888765 321 1 2345555778999999999877889999999999999999887
Q ss_pred cC-------CC-CeEEEcCCCChhHHHHHHHCC--------------CEEEEec--CCCCCCCCHHHHHHhhcc--CCce
Q 025730 167 LD-------PG-DKIVDCPPTFTMYEFDAAVNG--------------AAVVKVP--RKSDFSLNVELIADAVER--EKPK 220 (249)
Q Consensus 167 ~~-------pG-d~Vlv~~P~y~~~~~~~~~~G--------------~~v~~v~--~~~~~~id~e~l~~~i~~--~~~k 220 (249)
.. +| ++|++.+++|..+...+...+ ..+..++ .......|+++|++++++ .+++
T Consensus 156 ~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~a 235 (457)
T 3tfu_A 156 LQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELA 235 (457)
T ss_dssp HHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEE
Confidence 64 55 589999999976554443331 1222333 211122478999998863 4577
Q ss_pred EEEEcC-CCCccccCCChH---HHHHHHhhhhC
Q 025730 221 CIFLTS-PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 221 ~i~l~~-PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+|++.. ++|++|.++++. +.+.++|++||
T Consensus 236 avi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~g 268 (457)
T 3tfu_A 236 AVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYE 268 (457)
T ss_dssp EEEECSSEECTTTCEECCTHHHHHHHHHHHHHT
T ss_pred EEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcC
Confidence 787777 799999887543 55788999886
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-12 Score=124.19 Aligned_cols=120 Identities=8% Similarity=0.031 Sum_probs=98.2
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHH-HHHCCCEEEEecCC-CCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD-AAVNGAAVVKVPRK-SDFS 204 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~-~~~~G~~v~~v~~~-~~~~ 204 (249)
++....++++.+|+++|.+. .+++++|+++++..++.+++++||+|++..++|..+... +...|++++.++.. ++++
T Consensus 171 ~~~~i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~~ 249 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYG 249 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTC
T ss_pred ChHHHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCccccC
Confidence 44447899999999999764 488999999999999999999999999999999877766 77899999998743 2333
Q ss_pred ----CCHHHH-----HHhhccCC-----c----eEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 205 ----LNVELI-----ADAVEREK-----P----KCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 205 ----id~e~l-----~~~i~~~~-----~----k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+|++++ ++++++.. + |+|+++|| ||+|.++ +.+.+.++|++||
T Consensus 250 i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~-dl~~I~~la~~~g 310 (730)
T 1c4k_A 250 FIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIY-NAHEVVKRIGHLC 310 (730)
T ss_dssp CEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEE-CHHHHHHHHGGGB
T ss_pred ccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeec-CHHHHHHHHHHcC
Confidence 688888 88887321 4 89999999 5899995 5677888898875
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-12 Score=115.51 Aligned_cols=147 Identities=18% Similarity=0.137 Sum_probs=103.2
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-cc-C-CCCCC------C-cChHHH----HHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LK-F-PYIYP------D-PESRRL----RAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~-~-~~~Yp------~-~g~~~l----r~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
.++++ .+++++ ++.+.+++.+ +. . ...|+ . ....++ |+++++++|.++++|++++| ++++.+
T Consensus 25 ~~~~~-~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sG-t~a~~~ 100 (405)
T 2vi8_A 25 KIELI-ASENFV--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSG-AQANMA 100 (405)
T ss_dssp SEECC-TTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHH
T ss_pred ceeec-cCcccC--CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCc-HHHHHH
Confidence 44555 555666 7899999976 42 2 22222 1 223344 46999999987655556777 999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHH-H--HHHC--CCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEF-D--AAVN--GAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~-~--~~~~--G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
++.+++++||+|+++.|+|..+.. . .... +.+++.++.+ +++.+|++++++++++.++++|++ +|+|. |..
T Consensus 101 a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~~~- 177 (405)
T 2vi8_A 101 VYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA-AAAAY-PRI- 177 (405)
T ss_dssp HHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-CSC-
T ss_pred HHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-Ccc-
Confidence 999999999999999999986632 1 1122 3478888754 568899999999997437888886 55554 444
Q ss_pred ChHHHHHHHhhhhC
Q 025730 236 WTSSWIWGISSEHN 249 (249)
Q Consensus 236 ~~~e~i~~i~~~~~ 249 (249)
.+.+.+.++|++||
T Consensus 178 ~~l~~i~~l~~~~~ 191 (405)
T 2vi8_A 178 IDFAKFREIADEVG 191 (405)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcC
Confidence 34677888899875
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=113.23 Aligned_cols=157 Identities=10% Similarity=0.035 Sum_probs=106.9
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccC-C-----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKF-P-----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~-~-----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..| .++++ .++.+.+++.+ +.. . ..|+.....+|.+.++++++.+.++|++|+|++++++.+
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~a 128 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETN 128 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHH
Confidence 45678999887 55565 45888888764 321 1 234444456788889988877788999999999999999
Q ss_pred HHHhcC--------CCCeEEEcCCCChhHHHHHHHCCC-------------EEEEecCC-----CCCCCC--------HH
Q 025730 163 MRCVLD--------PGDKIVDCPPTFTMYEFDAAVNGA-------------AVVKVPRK-----SDFSLN--------VE 208 (249)
Q Consensus 163 ~~~~~~--------pGd~Vlv~~P~y~~~~~~~~~~G~-------------~v~~v~~~-----~~~~id--------~e 208 (249)
++.+.. ++++|++.+|+|..+...+...+. .+..++.. ++++.+ ++
T Consensus 129 l~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 208 (460)
T 3gju_A 129 IKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCAD 208 (460)
T ss_dssp HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHH
Confidence 998764 469999999999866554443221 34445422 222344 58
Q ss_pred HHHHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 209 LIADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 209 ~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+|++++++ .++++|+++.++|++|.+.++. +.+.++|++||
T Consensus 209 ~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 255 (460)
T 3gju_A 209 KLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYD 255 (460)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 88888863 3456666555567777754443 55788999986
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-11 Score=110.89 Aligned_cols=156 Identities=14% Similarity=0.166 Sum_probs=105.7
Q ss_pred CCCCeeeccCC--CCCCCC-CHHHHHHHHh-ccC-C-----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYGP-PPEVREALGQ-LKF-P-----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~~-p~~v~~al~~-~~~-~-----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..| .++++. ++.+.+++.+ +.. . ..|+.....+|.+.++++++.+.++|++|+|++++++.+
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~a 127 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTM 127 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHH
Confidence 35568999887 666654 5888888765 321 1 234444567889999999888888999999999999999
Q ss_pred HHHhcC--------CCCeEEEcCCCChhHHHHHHHCCC-------------EEEEecCC-----CCCCCC--------HH
Q 025730 163 MRCVLD--------PGDKIVDCPPTFTMYEFDAAVNGA-------------AVVKVPRK-----SDFSLN--------VE 208 (249)
Q Consensus 163 ~~~~~~--------pGd~Vlv~~P~y~~~~~~~~~~G~-------------~v~~v~~~-----~~~~id--------~e 208 (249)
++.+.. ++|+|++.+|+|..+...+...+. .+..++.. .++ .| ++
T Consensus 128 l~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~ 206 (459)
T 4a6r_A 128 IRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAAR 206 (459)
T ss_dssp HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHH
Confidence 998875 579999999999876655544322 23334321 112 45 78
Q ss_pred HHHHhhcc--CCceEEEEcCCCC-ccccCCC-hH--HHHHHHhhhhC
Q 025730 209 LIADAVER--EKPKCIFLTSPNN-PDGRFSW-TS--SWIWGISSEHN 249 (249)
Q Consensus 209 ~l~~~i~~--~~~k~i~l~~PnN-PTG~~~~-~~--e~i~~i~~~~~ 249 (249)
+|++++++ .+..++++++|+| ++|.+.+ .+ +.+.++|++||
T Consensus 207 ~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 253 (459)
T 4a6r_A 207 WLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYD 253 (459)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 88888863 1233455566654 4555443 33 55788999986
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-12 Score=113.25 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=94.7
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhc--c-C--CCCCCCc--ChHHHHHHHHHHcCCC-CCCEEE-eCCHHHHHHHHHHHh
Q 025730 96 DIVKIDANENPYGPPPEVREALGQL--K-F--PYIYPDP--ESRRLRAALAKDSGLE-SDHILV-GCGADELIDLIMRCV 166 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~--~-~--~~~Yp~~--g~~~lr~~la~~~~~~-~~~I~v-t~Ga~~~l~~~~~~~ 166 (249)
.++.++. .+.++|+.+++++.+. . . .++|++. ...++++.+++++|++ +++|++ |+|+++++.+++.++
T Consensus 40 ~~~~~~~--~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l 117 (398)
T 2fyf_A 40 RDGRFGS--GPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGL 117 (398)
T ss_dssp SSCBCCS--SSCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHT
T ss_pred CCccccC--CCCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHh
Confidence 3455554 4557889999998762 1 1 1344432 3578999999999997 468998 999999999999999
Q ss_pred cCCCCeEEEcCCCChh-HHHHHHHC--CCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH
Q 025730 167 LDPGDKIVDCPPTFTM-YEFDAAVN--GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 167 ~~pGd~Vlv~~P~y~~-~~~~~~~~--G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~ 240 (249)
+++| .+.+..+.|.. +...+... |++++.++.++++..+. .++ .++++|++++||||||.+++.+++
T Consensus 118 ~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g~~~~~-----~i~-~~~~~v~~~~~~nptG~~~~~~~i 187 (398)
T 2fyf_A 118 IDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEP-----QTD-PSVDVIAWAHNETSTGVAVAVRRP 187 (398)
T ss_dssp CSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCTTCCCCC-----CCC-TTCSEEEEESEETTTTEECCCCCC
T ss_pred cCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecCCCCCCCc-----ccc-CCCCEEEEeCcCCCcceecchHHh
Confidence 9887 22333444431 22245555 88888888764433332 244 689999999999999999766543
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-11 Score=108.50 Aligned_cols=117 Identities=8% Similarity=0.053 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHH--HHHHHCC--CEEEEecCCC-----
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE--FDAAVNG--AAVVKVPRKS----- 201 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~--~~~~~~G--~~v~~v~~~~----- 201 (249)
..++++.++++++.+ +.|++|+|++++++.++.. +.+||+|++.+++|..+. ..++..| .+++.++.+.
T Consensus 37 ~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 114 (379)
T 3ke3_A 37 MNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTE 114 (379)
T ss_dssp HHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCS
T ss_pred HHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecccccccc
Confidence 457888889999987 7889999999999998864 579999999999987543 3445555 4778877532
Q ss_pred ---C-CCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh--HHHHHHHhhhhC
Q 025730 202 ---D-FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT--SSWIWGISSEHN 249 (249)
Q Consensus 202 ---~-~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~--~e~i~~i~~~~~ 249 (249)
. ..+|++++++++++.++++|++++++||||.+++. .+.+.++|++||
T Consensus 115 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~ 168 (379)
T 3ke3_A 115 APKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVG 168 (379)
T ss_dssp SCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcC
Confidence 1 25899999999964579999999999999999764 456788898876
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=112.30 Aligned_cols=155 Identities=13% Similarity=0.123 Sum_probs=103.4
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC--CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP--YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~--~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.+...+|+..|. ++++ .++.+.+++.+ +... +.||+....+|+++++++++ ..++|++|+|+++++..+++.+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a 129 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLA 129 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHH
Confidence 456789998875 5666 48899988875 3322 45677778899999999996 5789999999999999999876
Q ss_pred cC--CCCeEEEcCCCChhHHHHHHH-CCCEE--EEecCCCCCC------------CCHHHHHHhhcc--CCceEEEEcCC
Q 025730 167 LD--PGDKIVDCPPTFTMYEFDAAV-NGAAV--VKVPRKSDFS------------LNVELIADAVER--EKPKCIFLTSP 227 (249)
Q Consensus 167 ~~--pGd~Vlv~~P~y~~~~~~~~~-~G~~v--~~v~~~~~~~------------id~e~l~~~i~~--~~~k~i~l~~P 227 (249)
.. ++++|++.+|+|..+...+.. .|..+ ..++....+. -|++++++++++ .++++|+ ++|
T Consensus 130 ~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi-~ep 208 (429)
T 3k28_A 130 RGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVI-VEP 208 (429)
T ss_dssp HHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEE-ECS
T ss_pred HHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEE-EcC
Confidence 54 668999999999754332221 22111 1122111110 179999998863 2344554 555
Q ss_pred C-CccccCCCh---HHHHHHHhhhhC
Q 025730 228 N-NPDGRFSWT---SSWIWGISSEHN 249 (249)
Q Consensus 228 n-NPTG~~~~~---~e~i~~i~~~~~ 249 (249)
+ |++|.+.++ .+.+.++|++||
T Consensus 209 ~~~~~G~~~~~~~~l~~l~~l~~~~~ 234 (429)
T 3k28_A 209 VAGNMGVVPPQPGFLEGLREVTEQNG 234 (429)
T ss_dssp SBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHcC
Confidence 5 455665443 355788999886
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-11 Score=111.93 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=105.6
Q ss_pred CCHHHHHHHHh--cc-CCCCCC-CcChHH----HHHHHHHHcCCCC-CCEEEeCCHHHHHHHHHHHh----c--------
Q 025730 109 PPPEVREALGQ--LK-FPYIYP-DPESRR----LRAALAKDSGLES-DHILVGCGADELIDLIMRCV----L-------- 167 (249)
Q Consensus 109 ~p~~v~~al~~--~~-~~~~Yp-~~g~~~----lr~~la~~~~~~~-~~I~vt~Ga~~~l~~~~~~~----~-------- 167 (249)
.++.+.+++.. .. ....|. .+...+ +++.+++++|+++ +++++|+|+++++..++.+. +
T Consensus 112 ~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~ 191 (497)
T 2qma_A 112 LMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSI 191 (497)
T ss_dssp BHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccch
Confidence 45666666543 22 123342 223333 4666888899865 78999999999999988873 3
Q ss_pred -CC------CC-eEEEcCCCChhHHHHHHHCCC---EEEEecCCCCCCCCHHHHHHhhccC---Cce--EEEEcCCCCcc
Q 025730 168 -DP------GD-KIVDCPPTFTMYEFDAAVNGA---AVVKVPRKSDFSLNVELIADAVERE---KPK--CIFLTSPNNPD 231 (249)
Q Consensus 168 -~p------Gd-~Vlv~~P~y~~~~~~~~~~G~---~v~~v~~~~~~~id~e~l~~~i~~~---~~k--~i~l~~PnNPT 231 (249)
.+ || .|+++.++|..+...+...|. +++.+|.++++.+|+++|++++++. +++ +|++++++|||
T Consensus 192 ~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~t 271 (497)
T 2qma_A 192 QKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDH 271 (497)
T ss_dssp HHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTT
T ss_pred hhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCC
Confidence 13 46 899999999988888888876 8999998788999999999998732 244 88889999999
Q ss_pred ccCCChHHHHHHHhhhhC
Q 025730 232 GRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~e~i~~i~~~~~ 249 (249)
|.+ .+.+.+..+|++||
T Consensus 272 G~~-~~l~~I~~l~~~~~ 288 (497)
T 2qma_A 272 GAI-DDLDFIADMAVKHD 288 (497)
T ss_dssp CCB-CCHHHHHHHHHHHT
T ss_pred CCC-CCHHHHHHHHHHcC
Confidence 997 67788889999986
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.4e-11 Score=108.52 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=106.8
Q ss_pred HHHHHHHHh-cc-CCCCC-CCcChHHHHHHHHHH----cCCCCC----------CEEEeCCHHHHHHHHHHHhcC-----
Q 025730 111 PEVREALGQ-LK-FPYIY-PDPESRRLRAALAKD----SGLESD----------HILVGCGADELIDLIMRCVLD----- 168 (249)
Q Consensus 111 ~~v~~al~~-~~-~~~~Y-p~~g~~~lr~~la~~----~~~~~~----------~I~vt~Ga~~~l~~~~~~~~~----- 168 (249)
..+.+.+.. +. ....| ..++..++++.++++ +|++.+ ..++|+|+++++..++.+..+
T Consensus 93 ~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~ 172 (481)
T 4e1o_A 93 SLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILE 172 (481)
T ss_dssp HHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHH
Confidence 344444443 22 23456 345677777777655 576542 578999999999888775532
Q ss_pred --------------CCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCC-----ceEEEEcCCCC
Q 025730 169 --------------PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREK-----PKCIFLTSPNN 229 (249)
Q Consensus 169 --------------pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~-----~k~i~l~~PnN 229 (249)
+++.|+++.++|..+...+...|++++.|+.++++.+|+++|++++++.+ +.+|+++.++|
T Consensus 173 ~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t 252 (481)
T 4e1o_A 173 MKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTT 252 (481)
T ss_dssp HHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCT
T ss_pred hhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 57899999999999999999999999999988889999999999997321 67788889999
Q ss_pred ccccCCChHHHHHHHhhhhC
Q 025730 230 PDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 230 PTG~~~~~~e~i~~i~~~~~ 249 (249)
+||.+ .+.+.+..+|++||
T Consensus 253 ~~G~i-d~l~~I~~la~~~~ 271 (481)
T 4e1o_A 253 GVCAF-DCLSELGPICAREG 271 (481)
T ss_dssp TTCCB-CCHHHHHHHHHHHT
T ss_pred CCcCc-CCHHHHHHHHHHcC
Confidence 99988 77888999999986
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.1e-11 Score=111.55 Aligned_cols=149 Identities=13% Similarity=0.072 Sum_probs=94.5
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCCCc----C---hHHHH----HHHHHHcCCCCCC---EEEeCCHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF--PYIYPDP----E---SRRLR----AALAKDSGLESDH---ILVGCGADEL 158 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp~~----g---~~~lr----~~la~~~~~~~~~---I~vt~Ga~~~ 158 (249)
+.|.|-.++|. +++.|++++.. +.. ..+||.. | ..+|+ +.+++++|.+.++ .+++++++++
T Consensus 55 ~~i~lias~n~--~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~A 132 (490)
T 2a7v_A 55 RGLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 132 (490)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred cCceEECCCCC--CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHH
Confidence 34777776665 57999999976 322 2345421 1 23555 8899999987753 3455678999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHH--------HHHHCCCEE--EEecCC-CCCCCCHHHHHHhhccCCceEEEEcCC
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEF--------DAAVNGAAV--VKVPRK-SDFSLNVELIADAVEREKPKCIFLTSP 227 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~--------~~~~~G~~v--~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~P 227 (249)
+..++.++++|||+|++.++.|..+.. .+...|..+ +.++.+ +++.+|+++++++++..++|+|+++.+
T Consensus 133 n~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s 212 (490)
T 2a7v_A 133 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 212 (490)
T ss_dssp HHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCC
Confidence 999999999999999999998864321 223455544 344433 467899999999986557899999999
Q ss_pred CCccccCCChHHHHHHHhhhhC
Q 025730 228 NNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 228 nNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+||+ . .+.+.+.+||++||
T Consensus 213 ~~~~--~-~dl~~i~~ia~~~g 231 (490)
T 2a7v_A 213 AYAR--L-IDYARMREVCDEVK 231 (490)
T ss_dssp SCCS--C-CCHHHHHHHHHHTT
T ss_pred CCCC--c-ccHHHHHHHHHHcC
Confidence 9985 3 35677888999886
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-11 Score=106.93 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=101.9
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC--CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP--YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~--~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.+...+|+..+. ++++ .++.+.+++.+ +... +.||+....+|.+.++++++ ..++|++++|++++++.+++..
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a 129 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLA 129 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHH
Confidence 456789998875 4454 57889998876 4332 34677667889999999997 6789999999999999998854
Q ss_pred c--CCCCeEEEcCCCChhHHHHHHH-C--CCEEEEecCCCCC------------CCCHHHHHHhhccC-CceEEEEcCCC
Q 025730 167 L--DPGDKIVDCPPTFTMYEFDAAV-N--GAAVVKVPRKSDF------------SLNVELIADAVERE-KPKCIFLTSPN 228 (249)
Q Consensus 167 ~--~pGd~Vlv~~P~y~~~~~~~~~-~--G~~v~~v~~~~~~------------~id~e~l~~~i~~~-~~k~i~l~~Pn 228 (249)
. ..+++|++.+++|..+...+.. . +......+...+. .-|++++++++++. +...+++++|+
T Consensus 130 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~ 209 (429)
T 4e77_A 130 RGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPV 209 (429)
T ss_dssp HHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSS
T ss_pred HHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCc
Confidence 2 3568999999999755432111 1 1111111111110 11899999998742 23455568888
Q ss_pred CccccCCCh----HHHHHHHhhhhC
Q 025730 229 NPDGRFSWT----SSWIWGISSEHN 249 (249)
Q Consensus 229 NPTG~~~~~----~e~i~~i~~~~~ 249 (249)
|++|.++.+ .+.+.++|++||
T Consensus 210 ~~~~g~~~~~~~~l~~l~~l~~~~~ 234 (429)
T 4e77_A 210 AGNMNCIPPLPEFLPGLRALCDEFG 234 (429)
T ss_dssp BCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 777655555 477888999986
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-11 Score=115.58 Aligned_cols=119 Identities=10% Similarity=0.097 Sum_probs=97.2
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSL 205 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~i 205 (249)
|..-..++++.+|+++|.+ ..+++++|++.++..++.++++|||+|+++.++|..+...+...|+++++++.. +.+++
T Consensus 193 ~~g~i~eaE~~lA~~fGa~-~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi 271 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNAD-RSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGI 271 (715)
T ss_dssp TBTHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHhCCC-CceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecccccccc
Confidence 4334789999999999964 357788999999999999999999999999999999888899999999999843 23443
Q ss_pred ---------CHHHHHHhhcc-CCce---EEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 206 ---------NVELIADAVER-EKPK---CIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 206 ---------d~e~l~~~i~~-~~~k---~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
|+++|++++++ .++| ++++++| ||+|.++ +.+.+.++|+++
T Consensus 272 ~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~-dl~~I~ela~~~ 325 (715)
T 3n75_A 272 LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLY-NTDFIKKTLDVK 325 (715)
T ss_dssp BCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEE-CHHHHHHHCCCS
T ss_pred ccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccC-CHHHHHHHhCcC
Confidence 89999999974 2344 8999999 9999996 455566666553
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-11 Score=107.73 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=104.4
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC--CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP--YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~--~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.+...||+..|. ++++ .++.+.+++.+ +... +.|++....+|.+.++++++ .+++|++++|++++++.+++..
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a 128 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIM 128 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHH
Confidence 346689998885 5565 48899998875 4332 33455556789999999987 6889999999999999999532
Q ss_pred c--CCCCeEEEcCCCChhHHHHHHHC-CC-------------------EEEEecCCCCCCCCHHHHHHhhccC--CceEE
Q 025730 167 L--DPGDKIVDCPPTFTMYEFDAAVN-GA-------------------AVVKVPRKSDFSLNVELIADAVERE--KPKCI 222 (249)
Q Consensus 167 ~--~pGd~Vlv~~P~y~~~~~~~~~~-G~-------------------~v~~v~~~~~~~id~e~l~~~i~~~--~~k~i 222 (249)
. ..+++|++.+|+|..+...+... |. .++.++.+ |++++++++++. ++++|
T Consensus 129 ~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~v 203 (427)
T 3fq8_A 129 RAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGV 203 (427)
T ss_dssp HHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEE
T ss_pred HHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEE
Confidence 1 23589999999996433222111 11 12333321 899999998742 56777
Q ss_pred EEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 223 FLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 223 ~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+++.++|++|.+.++. +.+.++|++||
T Consensus 204 i~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 233 (427)
T 3fq8_A 204 ILEPIVGNSGFIVPDAGFLEGLREITLEHD 233 (427)
T ss_dssp EECSSBCTTSCBCCCTTHHHHHHHHHHHTT
T ss_pred EEcCCcCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 7666677888876543 55788899886
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6e-11 Score=107.78 Aligned_cols=149 Identities=16% Similarity=0.112 Sum_probs=103.3
Q ss_pred CCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC--CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-
Q 025730 94 PEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP--YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV- 166 (249)
Q Consensus 94 ~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~--~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~- 166 (249)
+...|||..+. ++++ .++.+.+++.+ +... ..|+.....++++.++++++ ..++|++++|+++++..+++..
T Consensus 55 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar 133 (434)
T 2epj_A 55 GARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLAR 133 (434)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 45678998886 4454 57888888875 3332 44555556789999999985 5789999999999999999861
Q ss_pred -cCCCCeEEEcCCCChhHHHHHH--------------HCCC------EEEEecCCCCCCCCHHHHHHhhcc--CCceEEE
Q 025730 167 -LDPGDKIVDCPPTFTMYEFDAA--------------VNGA------AVVKVPRKSDFSLNVELIADAVER--EKPKCIF 223 (249)
Q Consensus 167 -~~pGd~Vlv~~P~y~~~~~~~~--------------~~G~------~v~~v~~~~~~~id~e~l~~~i~~--~~~k~i~ 223 (249)
+.++|+|++.+|+|..+...+. ..|. .++.++. .|++++++++++ .++++|+
T Consensus 134 ~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi 208 (434)
T 2epj_A 134 GYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-----NDVEALERVFAEYGDRIAGVI 208 (434)
T ss_dssp HHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHHGGGEEEEE
T ss_pred HhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-----CCHHHHHHHHHhCCCCEEEEE
Confidence 3356889999999975432111 1232 3555553 389999999873 2555655
Q ss_pred EcCC-CCccccCCChH---HHHHHHhhhhC
Q 025730 224 LTSP-NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 224 l~~P-nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++| +|+||.++++. +.+.++|++||
T Consensus 209 -~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 237 (434)
T 2epj_A 209 -VEPVIANAGVIPPRREFLAALQRLSRESG 237 (434)
T ss_dssp -ECSSBCSSSCBCCCHHHHHHHHHHHHHHT
T ss_pred -EeCCcCCCCccCCCHHHHHHHHHHHHHcC
Confidence 555 56799876533 45788899886
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.9e-11 Score=108.54 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=98.0
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCCC-----CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFPY-----IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~~-----~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..+ .+.++ .++.+.+++.+ +.... .|+.....+|.+.++++++...++|++|+|+++++..++
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al 121 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIAL 121 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHH
Confidence 34567898876 44444 46888888875 43321 233334567888888888766789999999999999999
Q ss_pred HHhcC----CC----CeEEEcCCCChhHHHHHHHCCC-------------EEEEecCCCCCCC-----------CHHHHH
Q 025730 164 RCVLD----PG----DKIVDCPPTFTMYEFDAAVNGA-------------AVVKVPRKSDFSL-----------NVELIA 211 (249)
Q Consensus 164 ~~~~~----pG----d~Vlv~~P~y~~~~~~~~~~G~-------------~v~~v~~~~~~~i-----------d~e~l~ 211 (249)
+.+.. +| |+|++.+|+|..+...+...+. .+..++....+.. |+++|+
T Consensus 122 ~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 201 (448)
T 3dod_A 122 KMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELA 201 (448)
T ss_dssp HHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHH
Confidence 98765 44 9999999999766544333222 2334444333333 488899
Q ss_pred Hhhc--cCCceEEEEcCCC-CccccCCChH---HHHHHHhhhhC
Q 025730 212 DAVE--REKPKCIFLTSPN-NPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 212 ~~i~--~~~~k~i~l~~Pn-NPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++++ ..++++|++..++ |++|.+.++. +.+.++|++||
T Consensus 202 ~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~ 245 (448)
T 3dod_A 202 QLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYD 245 (448)
T ss_dssp HHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTT
T ss_pred HHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhC
Confidence 9886 2355666665556 8888665543 55788999886
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=106.77 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=105.6
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCCC-----CCCCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFPY-----IYPDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~~-----~Yp~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..| .++++ .++.+.+++.+ +.... .|+.....+|++.++++++.. .++|++|+|++++++.+
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~a 141 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENA 141 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHH
Confidence 45668999887 66676 37888888765 32211 234444577888888888754 57999999999999999
Q ss_pred HHHhcC--CCCeEEEcCCCChhHHHHHHHCCC--------------EEEEecCC----CCCCCC--------HHHHHHhh
Q 025730 163 MRCVLD--PGDKIVDCPPTFTMYEFDAAVNGA--------------AVVKVPRK----SDFSLN--------VELIADAV 214 (249)
Q Consensus 163 ~~~~~~--pGd~Vlv~~P~y~~~~~~~~~~G~--------------~v~~v~~~----~~~~id--------~e~l~~~i 214 (249)
++.... .+++|++.+++|..+...+...+. .+..++.. +.++.+ ++.+++.+
T Consensus 142 lk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i 221 (453)
T 4ffc_A 142 IKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI 221 (453)
T ss_dssp HHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhc
Confidence 976542 458999999999865554443221 34555533 223333 46666666
Q ss_pred ccCCceEEEEcCCCCccccCCCh----HHHHHHHhhhhC
Q 025730 215 EREKPKCIFLTSPNNPDGRFSWT----SSWIWGISSEHN 249 (249)
Q Consensus 215 ~~~~~k~i~l~~PnNPTG~~~~~----~e~i~~i~~~~~ 249 (249)
. .+..+++|+.|+|++|.++.. .+.+.++|++||
T Consensus 222 ~-~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~ 259 (453)
T 4ffc_A 222 G-AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENG 259 (453)
T ss_dssp C-GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHT
T ss_pred C-CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcC
Confidence 5 345677778998888744333 355888999986
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=106.08 Aligned_cols=148 Identities=12% Similarity=0.091 Sum_probs=90.6
Q ss_pred CCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC--CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH--
Q 025730 94 PEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP--YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC-- 165 (249)
Q Consensus 94 ~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~--~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~-- 165 (249)
+...|||..+. ++++ .++.+.+++.+ +... +.|+.....++.+.++++++ ..++|++++|+++++..+++.
T Consensus 56 g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar 134 (453)
T 2cy8_A 56 GNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVAR 134 (453)
T ss_dssp CCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCSSCSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 45678998886 4443 67889998876 4332 23333223445555555555 578999999999999999987
Q ss_pred -hcCCCCeEEEcCCCChhHHHHHHH-----------CCC------EEEEecCCCCCCCCHHHHHHhhcc--CCceEEEEc
Q 025730 166 -VLDPGDKIVDCPPTFTMYEFDAAV-----------NGA------AVVKVPRKSDFSLNVELIADAVER--EKPKCIFLT 225 (249)
Q Consensus 166 -~~~pGd~Vlv~~P~y~~~~~~~~~-----------~G~------~v~~v~~~~~~~id~e~l~~~i~~--~~~k~i~l~ 225 (249)
+.+ +|+|++.+|+|..+...+.. .|. .++.++. .|++++++++++ .++++|+ +
T Consensus 135 ~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi-~ 207 (453)
T 2cy8_A 135 AFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFI-A 207 (453)
T ss_dssp HHHC-CCEEEEECC----------------------------CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEE-E
T ss_pred HhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEE-E
Confidence 555 47889999999865443221 132 1333332 389999999863 2556655 5
Q ss_pred CC-CCccccCCCh-H--HHHHHHhhhhC
Q 025730 226 SP-NNPDGRFSWT-S--SWIWGISSEHN 249 (249)
Q Consensus 226 ~P-nNPTG~~~~~-~--e~i~~i~~~~~ 249 (249)
+| +||||.++++ + +.+.++|++||
T Consensus 208 ep~~~~tG~~~~~~~~l~~l~~l~~~~g 235 (453)
T 2cy8_A 208 EPVGSHFGVTPVSDSFLREGAELARQYG 235 (453)
T ss_dssp CSSEHHHHTEECCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 55 4779987553 3 45788899886
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-11 Score=112.21 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=107.7
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccC-C-----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKF-P-----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~-~-----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..| .++++ .++.+.+++.+ +.. . ..|+.+...+|.+.|+++++...++|++++|++++++.+
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~a 132 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTN 132 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHH
Confidence 45678999887 66676 56888888865 321 1 234444467899999999887778999999999999999
Q ss_pred HHHhcC--------CCCeEEEcCCCChhHHHHHHHCCC------------EEEEecCCC-----CCCCC--------HHH
Q 025730 163 MRCVLD--------PGDKIVDCPPTFTMYEFDAAVNGA------------AVVKVPRKS-----DFSLN--------VEL 209 (249)
Q Consensus 163 ~~~~~~--------pGd~Vlv~~P~y~~~~~~~~~~G~------------~v~~v~~~~-----~~~id--------~e~ 209 (249)
++.+.. ++++|++.+|+|..+...+...+. .+..++... ++ .| +++
T Consensus 133 ik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~ 211 (472)
T 3hmu_A 133 IRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARE 211 (472)
T ss_dssp HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHH
Confidence 998764 468999999999876655544333 244455322 12 34 788
Q ss_pred HHHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 210 IADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 210 l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
|++++++ .++++|++..++|++|.+.++. +.+.++|++||
T Consensus 212 le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~g 257 (472)
T 3hmu_A 212 LEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYD 257 (472)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 8888853 3445555445566777765443 55788899886
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-11 Score=110.69 Aligned_cols=156 Identities=10% Similarity=0.104 Sum_probs=103.4
Q ss_pred CCCeeeccCCC--CCCC-CCHHHH-H-HHHh----ccCC----CCCCCcChHHHHHHHHHHcC-CCCCCEEEeCCHHHHH
Q 025730 94 PEDIVKIDANE--NPYG-PPPEVR-E-ALGQ----LKFP----YIYPDPESRRLRAALAKDSG-LESDHILVGCGADELI 159 (249)
Q Consensus 94 ~~~~I~L~~~~--~~~~-~p~~v~-~-al~~----~~~~----~~Yp~~g~~~lr~~la~~~~-~~~~~I~vt~Ga~~~l 159 (249)
+...+|+..+. ++++ .++.+. + ++.+ +... ..|+.....++++.++++++ ...++|++++|+++++
T Consensus 53 g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~ 132 (449)
T 2cjg_A 53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAV 132 (449)
T ss_dssp CCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHH
T ss_pred CcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHH
Confidence 34577876653 4555 378888 7 7654 2221 23544446789999999997 5678999999999999
Q ss_pred HHHHHHhc---C----------C-CCeEEEcCCCChhHHHHHHH---------CCC-----EEEEecCCC--CC------
Q 025730 160 DLIMRCVL---D----------P-GDKIVDCPPTFTMYEFDAAV---------NGA-----AVVKVPRKS--DF------ 203 (249)
Q Consensus 160 ~~~~~~~~---~----------p-Gd~Vlv~~P~y~~~~~~~~~---------~G~-----~v~~v~~~~--~~------ 203 (249)
+.+++.+. . + ||+|++.+|+|..+...+.. .+. .++.++.++ ..
T Consensus 133 ~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 212 (449)
T 2cjg_A 133 ENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAA 212 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccch
Confidence 99987542 2 2 89999999999754332111 122 566666533 11
Q ss_pred --CCCHHHHHHhhcc--CCceEEEEcCCCCcccc-CCChH--HHHHHHhhhhC
Q 025730 204 --SLNVELIADAVER--EKPKCIFLTSPNNPDGR-FSWTS--SWIWGISSEHN 249 (249)
Q Consensus 204 --~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~-~~~~~--e~i~~i~~~~~ 249 (249)
..++++|++++++ .++++|+++..+||||. +.+.+ +.+.++|++||
T Consensus 213 ~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 265 (449)
T 2cjg_A 213 LEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFD 265 (449)
T ss_dssp HHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCC
Confidence 2466778888852 46777665444689995 54444 44788899886
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.6e-11 Score=106.12 Aligned_cols=148 Identities=12% Similarity=0.040 Sum_probs=101.5
Q ss_pred CCCeeeccCCC--CCCC-CCHHHHHHHHh-ccCC--CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH--
Q 025730 94 PEDIVKIDANE--NPYG-PPPEVREALGQ-LKFP--YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC-- 165 (249)
Q Consensus 94 ~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~~--~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~-- 165 (249)
+...|||..|. ++++ .++.+.+++.+ +... +.|+.....+|.+.++++++ .+++|++++|+++++..+++.
T Consensus 51 g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar 129 (424)
T 2e7u_A 51 GNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLAR 129 (424)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 45678998876 5554 57889888875 4332 34555556789999999986 678999999999999999885
Q ss_pred -hcCCCCeEEEcCCCChhHHHHHH--------------HCCC------EEEEecCCCCCCCCHHHHHHhhccC-CceEEE
Q 025730 166 -VLDPGDKIVDCPPTFTMYEFDAA--------------VNGA------AVVKVPRKSDFSLNVELIADAVERE-KPKCIF 223 (249)
Q Consensus 166 -~~~pGd~Vlv~~P~y~~~~~~~~--------------~~G~------~v~~v~~~~~~~id~e~l~~~i~~~-~~k~i~ 223 (249)
+. .+|+|++.+|+|..+...+. ..|. +++.++. .|++++++++++. +...++
T Consensus 130 ~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~v 203 (424)
T 2e7u_A 130 GYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRGEEIAAI 203 (424)
T ss_dssp HHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEE
T ss_pred Hhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCCCCEEEE
Confidence 44 45889999999976443221 1122 3445543 3899999988631 223455
Q ss_pred EcCCCCc-cccCCChH---HHHHHHhhhhC
Q 025730 224 LTSPNNP-DGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 224 l~~PnNP-TG~~~~~~---e~i~~i~~~~~ 249 (249)
+++|+|+ ||.++++. +.+.++ ++||
T Consensus 204 i~ep~~~~~G~~~~~~~~l~~l~~l-~~~g 232 (424)
T 2e7u_A 204 IFEPVVGNAGVLVPTEDFLKALHEA-KAYG 232 (424)
T ss_dssp EECSSBCTTSCBCCCHHHHHHHHHG-GGGT
T ss_pred EEeCCCCCCCCcCCCHHHHHHHHHH-HHcC
Confidence 5788765 89876543 345666 7765
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-10 Score=105.78 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=103.4
Q ss_pred HHHHHHHh-cc-CCCCC-CCcChHHHHHHH----HHHcCCCCC---------CEEEeCCHHHHHHHHHHHhc--------
Q 025730 112 EVREALGQ-LK-FPYIY-PDPESRRLRAAL----AKDSGLESD---------HILVGCGADELIDLIMRCVL-------- 167 (249)
Q Consensus 112 ~v~~al~~-~~-~~~~Y-p~~g~~~lr~~l----a~~~~~~~~---------~I~vt~Ga~~~l~~~~~~~~-------- 167 (249)
.+.+.+.. +. ....| ..++..++++.+ ++++|.+.+ ..++|+|++++..+++.+..
T Consensus 89 ~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~ 168 (475)
T 3k40_A 89 IVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVK 168 (475)
T ss_dssp HHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhh
Confidence 34444443 22 22445 345566677665 455677643 58999999999887776542
Q ss_pred -----------CCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC-----CceEEEEcCCCCcc
Q 025730 168 -----------DPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE-----KPKCIFLTSPNNPD 231 (249)
Q Consensus 168 -----------~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPT 231 (249)
.+++.|+++..+|..+...+...|++++.||.++++ +|+++|++++++. .+.+|+++.++|+|
T Consensus 169 ~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~ 247 (475)
T 3k40_A 169 ELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNS 247 (475)
T ss_dssp HHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTT
T ss_pred ccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCC
Confidence 134789999999999999999999999999988888 9999999999732 16678889999999
Q ss_pred ccCCChHHHHHHHhhhhC
Q 025730 232 GRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~e~i~~i~~~~~ 249 (249)
|.+ .+.+.+..+|++||
T Consensus 248 G~~-~~l~~I~~la~~~~ 264 (475)
T 3k40_A 248 CAF-DYLDECGPVGNKHN 264 (475)
T ss_dssp CCB-CCHHHHHHHHHHTT
T ss_pred cCc-CCHHHHHHHHHHhC
Confidence 998 77788899999986
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=104.94 Aligned_cols=157 Identities=13% Similarity=0.127 Sum_probs=106.4
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccC-CC----CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKF-PY----IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~-~~----~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..| .++++ .++.+.+++.+ +.. .+ .|+.....+|.+.++++++...++|++++|+++++..++
T Consensus 52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Ai 131 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSAL 131 (476)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHH
Confidence 45668999887 66676 57888888865 322 11 234444567777777777767789999999999999999
Q ss_pred HHhcC--------CCCeEEEcCCCChhHHHHHHHCCCE-------------EEEecCCCC---CCCC--------HHHHH
Q 025730 164 RCVLD--------PGDKIVDCPPTFTMYEFDAAVNGAA-------------VVKVPRKSD---FSLN--------VELIA 211 (249)
Q Consensus 164 ~~~~~--------pGd~Vlv~~P~y~~~~~~~~~~G~~-------------v~~v~~~~~---~~id--------~e~l~ 211 (249)
+.+.. .+++|++.+|+|..+...+...+.. +..++.... +..| +++|+
T Consensus 132 k~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le 211 (476)
T 3i5t_A 132 RFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFE 211 (476)
T ss_dssp HHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHH
Confidence 98753 3579999999998776655543332 223331110 1222 78888
Q ss_pred Hhhcc---CCceEEEEcCCCCccccCCCh-H--HHHHHHhhhhC
Q 025730 212 DAVER---EKPKCIFLTSPNNPDGRFSWT-S--SWIWGISSEHN 249 (249)
Q Consensus 212 ~~i~~---~~~k~i~l~~PnNPTG~~~~~-~--e~i~~i~~~~~ 249 (249)
+.+++ .++++|+++.++|++|.+.++ + +.+.++|++||
T Consensus 212 ~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~g 255 (476)
T 3i5t_A 212 DRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHD 255 (476)
T ss_dssp HHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 88863 356777777777888864444 3 55788999986
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5.6e-10 Score=102.30 Aligned_cols=157 Identities=10% Similarity=0.097 Sum_probs=102.0
Q ss_pred CCCCeeeccCC--CCCCCC-CHHHHHHHHh-ccCCCC-----CCCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYGP-PPEVREALGQ-LKFPYI-----YPDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~~-p~~v~~al~~-~~~~~~-----Yp~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..| .++++. ++.+.+++.+ +..... |+.....+|.+.++++++.. .++|++|+|++++++.+
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~A 138 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENA 138 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHH
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHH
Confidence 45668999887 666654 7888888875 433222 33334567888888887643 57899999999999999
Q ss_pred HHHhcC--CCCeEEEcCCCChhHHHHHHHCCC--------------EEEEecCCCCC-----CC--------CHHHHHHh
Q 025730 163 MRCVLD--PGDKIVDCPPTFTMYEFDAAVNGA--------------AVVKVPRKSDF-----SL--------NVELIADA 213 (249)
Q Consensus 163 ~~~~~~--pGd~Vlv~~P~y~~~~~~~~~~G~--------------~v~~v~~~~~~-----~i--------d~e~l~~~ 213 (249)
++.... .+++|++.+++|..+...+...+. .+..++....+ +. +++.+++.
T Consensus 139 lk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 218 (451)
T 3oks_A 139 VKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITV 218 (451)
T ss_dssp HHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHH
Confidence 987653 448999999999865554443221 34555543110 11 24444444
Q ss_pred hcc---CCceEEEEcCCCCccccCCCh----HHHHHHHhhhhC
Q 025730 214 VER---EKPKCIFLTSPNNPDGRFSWT----SSWIWGISSEHN 249 (249)
Q Consensus 214 i~~---~~~k~i~l~~PnNPTG~~~~~----~e~i~~i~~~~~ 249 (249)
+++ .+..+++++.|+|++|.++.. .+.+.++|++||
T Consensus 219 l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g 261 (451)
T 3oks_A 219 IDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKND 261 (451)
T ss_dssp HHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTT
T ss_pred HHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcC
Confidence 431 245566678888777644333 366888999986
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-10 Score=102.63 Aligned_cols=132 Identities=7% Similarity=-0.073 Sum_probs=98.7
Q ss_pred CCCCCCHHHHHHHHh-ccC----CCC----C-CC----cChHHHHHHHHHHcCCCC-CCEEE-eCCHHHHHHHHHHHhcC
Q 025730 105 NPYGPPPEVREALGQ-LKF----PYI----Y-PD----PESRRLRAALAKDSGLES-DHILV-GCGADELIDLIMRCVLD 168 (249)
Q Consensus 105 ~~~~~p~~v~~al~~-~~~----~~~----Y-p~----~g~~~lr~~la~~~~~~~-~~I~v-t~Ga~~~l~~~~~~~~~ 168 (249)
...+.|+.|++++.. +.. +.. + -. .-..+.|+.++++++++. ++|++ |.|+|+++++++..++.
T Consensus 20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~ 99 (377)
T 3e77_A 20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIG 99 (377)
T ss_dssp CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGG
T ss_pred ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccC
Confidence 456788999999986 321 100 1 01 124678999999999865 57888 58999999999999986
Q ss_pred C--CCeEEEcCCCCh--hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 169 P--GDKIVDCPPTFT--MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 169 p--Gd~Vlv~~P~y~--~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
+ ||+|++..-++. .+...++..|..++.++.++++..+++.++.+++ +++++|.++|-.|.||.+.+.
T Consensus 100 ~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~-~~t~lV~~~h~et~tG~~~pi 171 (377)
T 3e77_A 100 LKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLN-PDASYVYYCANETVHGVEFDF 171 (377)
T ss_dssp GSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCC-TTCSCEEEESEETTTTEECSS
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhccC-CCccEEEEeCccCchheEchh
Confidence 5 999987766553 3445556678888878876667788887777776 789999999988999999654
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-09 Score=98.32 Aligned_cols=129 Identities=12% Similarity=-0.048 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHh-ccC-----------CCCCCC--cChHHHHHHHHHHcCCCC-CCEEE-eCCHHHHHHHHHHHhcCCC
Q 025730 107 YGPPPEVREALGQ-LKF-----------PYIYPD--PESRRLRAALAKDSGLES-DHILV-GCGADELIDLIMRCVLDPG 170 (249)
Q Consensus 107 ~~~p~~v~~al~~-~~~-----------~~~Yp~--~g~~~lr~~la~~~~~~~-~~I~v-t~Ga~~~l~~~~~~~~~pG 170 (249)
.+.|+.|++++.. +.. .++-+. .-..+.|+.++++++++. ++|++ |.|+|+++++++..++++|
T Consensus 36 t~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~g 115 (386)
T 3qm2_A 36 AMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDK 115 (386)
T ss_dssp CCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCC
Confidence 4577899999875 311 011111 236789999999999854 47888 6999999999999999999
Q ss_pred CeEEEcCCCC-h-hHHHHHHHCCCEEEEecCC--CCC-CCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 171 DKIVDCPPTF-T-MYEFDAAVNGAAVVKVPRK--SDF-SLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 171 d~Vlv~~P~y-~-~~~~~~~~~G~~v~~v~~~--~~~-~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
|+|++..-++ . .+...++..| ++..++.+ +.+ .+++++++.+++ +++++|+++|-.|.||.++++
T Consensus 116 d~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~-~~t~lV~~~h~et~tG~~i~p 185 (386)
T 3qm2_A 116 TTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS-DNAAYLHYCPNETIDGIAIDE 185 (386)
T ss_dssp CEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC-TTCSCEEECSEETTTTEECCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC-CCCcEEEEECCcCCcCEecCc
Confidence 9987554433 3 3445556678 89888876 333 378888888887 789999999888999996443
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=5.1e-08 Score=89.94 Aligned_cols=157 Identities=11% Similarity=0.131 Sum_probs=103.4
Q ss_pred CCCCeeeccCCCC--CCC-CCHHHHHHHHh-cc-----CCCCCCCcChHHHHHHHHHH----cCCCCCCEEEeCCHHHHH
Q 025730 93 KPEDIVKIDANEN--PYG-PPPEVREALGQ-LK-----FPYIYPDPESRRLRAALAKD----SGLESDHILVGCGADELI 159 (249)
Q Consensus 93 ~~~~~I~L~~~~~--~~~-~p~~v~~al~~-~~-----~~~~Yp~~g~~~lr~~la~~----~~~~~~~I~vt~Ga~~~l 159 (249)
.+...||+..|.. .++ .++.+.+++.+ +. ....|+.....++++++++. ++...+.|++++|+++++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~ 140 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSN 140 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHH
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHH
Confidence 3566889877643 344 47889999875 21 22234433456788887773 344678999999999999
Q ss_pred HHHHHHhc-------C------------------CC---CeEEEcCCCChhHHHHHH-HCCCE-------------EEEe
Q 025730 160 DLIMRCVL-------D------------------PG---DKIVDCPPTFTMYEFDAA-VNGAA-------------VVKV 197 (249)
Q Consensus 160 ~~~~~~~~-------~------------------pG---d~Vlv~~P~y~~~~~~~~-~~G~~-------------v~~v 197 (249)
+.+++.+. + || ++|++.++.|..+...+. ..|.. .+.+
T Consensus 141 ~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 220 (472)
T 1ohv_A 141 ENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPF 220 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECC
T ss_pred HHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCC
Confidence 99998763 1 46 899999999976554442 33321 1122
Q ss_pred cCCC-C------C-----CCCHHHHHHhhccC-----CceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 198 PRKS-D------F-----SLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 198 ~~~~-~------~-----~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
|... . + ..|+++|++++++. ++++|++...+|++|.+.++. +.+.++|++||
T Consensus 221 p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g 292 (472)
T 1ohv_A 221 PRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHG 292 (472)
T ss_dssp CCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTT
T ss_pred CcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 2100 0 0 12688999988731 788888776688899865543 55788898886
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-08 Score=89.57 Aligned_cols=134 Identities=14% Similarity=0.042 Sum_probs=95.0
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC----C-C----CCCC----cChHHHHHHHHHHcCCC-CCCEEE-eCCHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF----P-Y----IYPD----PESRRLRAALAKDSGLE-SDHILV-GCGADELI 159 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~----~-~----~Yp~----~g~~~lr~~la~~~~~~-~~~I~v-t~Ga~~~l 159 (249)
+++.|+.+- .+.|+.|++++.. +.. + . .+-. .-..+.|+.++++++++ +++|++ |.|+|+++
T Consensus 5 ~~~~f~pgp--t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~ 82 (361)
T 3m5u_A 5 RKINFSAGP--STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQF 82 (361)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred ceEeecCCC--CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHH
Confidence 445665554 4567899999886 321 0 0 1111 12567899999999986 457887 99999999
Q ss_pred HHHHHHhcCCCCeEE-EcCCCCh-hHHHHHHHCCCEEEEecCCCCCC--CCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 160 DLIMRCVLDPGDKIV-DCPPTFT-MYEFDAAVNGAAVVKVPRKSDFS--LNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 160 ~~~~~~~~~pGd~Vl-v~~P~y~-~~~~~~~~~G~~v~~v~~~~~~~--id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
++++..++ +||+++ +..-.|. .+...++..|+++..++.+.+.. ++++. + ++ +++++|.++|..|.||.++
T Consensus 83 n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~-~~t~lv~~~~~e~~tG~~~ 157 (361)
T 3m5u_A 83 AMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FS-DNADYAYICSNNTIYGTQY 157 (361)
T ss_dssp HHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CC-TTSSEEEEESEETTTTEEC
T ss_pred HHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh--h-cC-CCCCEEEEeCCCCCcceeC
Confidence 99999988 888763 3333443 44556677899999998765543 56665 3 76 7899999999999999985
Q ss_pred C
Q 025730 236 W 236 (249)
Q Consensus 236 ~ 236 (249)
+
T Consensus 158 ~ 158 (361)
T 3m5u_A 158 Q 158 (361)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.3e-09 Score=97.33 Aligned_cols=151 Identities=14% Similarity=0.099 Sum_probs=104.9
Q ss_pred CCCCeeeccCCCCC--CC-CCHHHHHHHHh-ccC--CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDANENP--YG-PPPEVREALGQ-LKF--PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~~~~--~~-~p~~v~~al~~-~~~--~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
++...||+..|..+ ++ .+|.+.+++.+ +.. ...|+.+...+|.+.|+++++ ..+.+++++++++++..+++..
T Consensus 98 dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~a 176 (465)
T 2yky_A 98 DGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQTENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATA 176 (465)
Confidence 45678898887653 33 36788888865 333 245677777889999999985 4678999999999999998864
Q ss_pred --cCCCCeEEEcCCCChhHHHHHH----HCCC--EEEEecCCCCCCCCHHHHHHhhcc--CCceEEEEcCCCCccccCCC
Q 025730 167 --LDPGDKIVDCPPTFTMYEFDAA----VNGA--AVVKVPRKSDFSLNVELIADAVER--EKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 167 --~~pGd~Vlv~~P~y~~~~~~~~----~~G~--~v~~v~~~~~~~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~ 236 (249)
...+|+|++.+++|..+...+. ..|. .++.++. -|++++++++++ .++++|++...+|++|.+.+
T Consensus 177 r~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~ 251 (465)
T 2yky_A 177 TAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-----NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPA 251 (465)
Confidence 2345999999999976554332 1233 2233332 378899988874 46788876544566997755
Q ss_pred hH---HHHHHHhhhhC
Q 025730 237 TS---SWIWGISSEHN 249 (249)
Q Consensus 237 ~~---e~i~~i~~~~~ 249 (249)
+. +.+.++|++||
T Consensus 252 ~~~~l~~l~~l~~~~g 267 (465)
T 2yky_A 252 ERAFLDLLRAEASRCG 267 (465)
Confidence 43 44677888875
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=4.8e-07 Score=83.02 Aligned_cols=116 Identities=9% Similarity=-0.051 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCCCC-CEEEeCCHHHHHHHHHHHhcCC----CCeEEEcCCCChhHHHHHHHCCCEEEEecC---CCCCC
Q 025730 133 RLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDP----GDKIVDCPPTFTMYEFDAAVNGAAVVKVPR---KSDFS 204 (249)
Q Consensus 133 ~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~~~~~~~~p----Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~---~~~~~ 204 (249)
.+...+.+++|++.. ..++++|+|.+...++.+.+++ |+.|+++.-+|......+...|+.++.++. ++.+.
T Consensus 102 ~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~ 181 (450)
T 3bc8_A 102 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELR 181 (450)
T ss_dssp HHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEE
T ss_pred HHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCC
Confidence 455566666798654 3588899986666666666665 899999999999999999999999999974 55688
Q ss_pred CCHHHHHHhhccC--CceEEEEcCCCC-ccccCCChHHHHHHHhhhhC
Q 025730 205 LNVELIADAVERE--KPKCIFLTSPNN-PDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 205 id~e~l~~~i~~~--~~k~i~l~~PnN-PTG~~~~~~e~i~~i~~~~~ 249 (249)
+|++++++++++. +.+++++.+|++ .+|.+ .+.+.+.++|++||
T Consensus 182 id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~-ddl~~Ia~ia~~~g 228 (450)
T 3bc8_A 182 TDLKAVEAKIQELGPEHILCLHSTTACFAPRVP-DRLEELAVICANYD 228 (450)
T ss_dssp CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCC-CCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHhcCCCCEEEEEEECCcCCCcee-cCHHHHHHHHHHCC
Confidence 9999999999753 256777777764 45566 78899999999986
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-06 Score=80.02 Aligned_cols=107 Identities=9% Similarity=-0.044 Sum_probs=83.2
Q ss_pred CCCC-CCEEEeCCHHHHHHHHHHHhcCC----CCeEEEcCCCChhHHHHHHHCCCEEEEecC---CCCCCCCHHHHHHhh
Q 025730 143 GLES-DHILVGCGADELIDLIMRCVLDP----GDKIVDCPPTFTMYEFDAAVNGAAVVKVPR---KSDFSLNVELIADAV 214 (249)
Q Consensus 143 ~~~~-~~I~vt~Ga~~~l~~~~~~~~~p----Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~---~~~~~id~e~l~~~i 214 (249)
|++. ...++++|+|.++..++.+.+++ ||+|+++.-+|......+...|+++++++. ++.+++|++++++++
T Consensus 130 G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI 209 (501)
T 3hl2_A 130 GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV 209 (501)
T ss_dssp TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHH
T ss_pred CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHH
Confidence 8765 35888999998888888877774 499999999999888888999999999983 446789999999999
Q ss_pred ccCC--ceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 215 EREK--PKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 215 ~~~~--~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++.+ ..++++.+|++--|.+..+.+.+.++|++||
T Consensus 210 ~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~g 246 (501)
T 3hl2_A 210 QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYD 246 (501)
T ss_dssp HHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHT
T ss_pred HhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcC
Confidence 7532 3344444443223445578899999999986
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0035 Score=57.51 Aligned_cols=151 Identities=12% Similarity=0.118 Sum_probs=95.3
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCCCCC--CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFPYIY--PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~~~Y--p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
++...||+..+ ...++ ..|.|.+++.+ +.....+ +.....+|.+.|++.+. ..+.+.++++++++.+.+++..
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~lae~l~~~~p-~~~~v~f~~SGsEA~e~AiklA 163 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGRLARLICERFP-QIEQLRFTNSGTEANLMALTAA 163 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCCCSEESSHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCccCCcHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHH
Confidence 45677888655 33443 46788888765 4433333 33446788899999885 3578999999999999988754
Q ss_pred c--CCCCeEEEcCCCChhHHHHHHH------CCCEEEEecCCCCCCCCHHHHHHhhccC--CceEEEEcCCCCccccCCC
Q 025730 167 L--DPGDKIVDCPPTFTMYEFDAAV------NGAAVVKVPRKSDFSLNVELIADAVERE--KPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 167 ~--~pGd~Vlv~~P~y~~~~~~~~~------~G~~v~~v~~~~~~~id~e~l~~~i~~~--~~k~i~l~~PnNPTG~~~~ 236 (249)
. ...++|+...-+|......+.. .......+|. -|++.+++.+++. ++.+|++.-...-.|.+.+
T Consensus 164 r~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-----nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p 238 (454)
T 4ao9_A 164 LHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-----NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPG 238 (454)
T ss_dssp HHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-----TCHHHHHHHHHHTGGGEEEEEECSEESTTTCEEC
T ss_pred HhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-----chHHHHHHHHhhcCCceEEEEeccccCCCCccCC
Confidence 2 1237888888887532211100 1122333332 2688888888642 4556655433455787766
Q ss_pred hH---HHHHHHhhhhC
Q 025730 237 TS---SWIWGISSEHN 249 (249)
Q Consensus 237 ~~---e~i~~i~~~~~ 249 (249)
+. +.+.++|++||
T Consensus 239 ~~~fL~~lr~lc~~~g 254 (454)
T 4ao9_A 239 QPDFLQALRESATQVG 254 (454)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHhhcC
Confidence 54 45788999986
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0054 Score=56.17 Aligned_cols=147 Identities=13% Similarity=0.096 Sum_probs=83.8
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCCc----C---hHHH----HHHHHHHcCCCCC----CEEEeCCHHHH
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LK--FPYIYPDP----E---SRRL----RAALAKDSGLESD----HILVGCGADEL 158 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~~----g---~~~l----r~~la~~~~~~~~----~I~vt~Ga~~~ 158 (249)
-|.|=..||- .++.|++++.. +. +.-+||.. | .+++ .+...+.||++.. +|-. .+++++
T Consensus 56 ~ieLIASEN~--~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP-~SGs~A 132 (490)
T 3ou5_A 56 GLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQP-YSGSPA 132 (490)
T ss_dssp SEECCTTCCC--CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCC-SSHHHH
T ss_pred CceEecCCCc--CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCc-CCHHHH
Confidence 3788788886 56899999876 32 23344421 1 2222 3344556787765 4444 455678
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHHHH--------HHCCC--EEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCC
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDA--------AVNGA--AVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSP 227 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~--------~~~G~--~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~P 227 (249)
...++.++++|||+|+..+.....+...- ...|. +.+.++.+ +++.+|.|++++...+.++|+|++---
T Consensus 133 N~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~S 212 (490)
T 3ou5_A 133 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 212 (490)
T ss_dssp HHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCc
Confidence 88999999999999999888776443211 11222 23333333 557799999999988789999996543
Q ss_pred CCccccCCChHHHHHHHhhhhC
Q 025730 228 NNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 228 nNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+|-= .+-+.+.+||++.|
T Consensus 213 aY~r~---id~~~~reIAd~vG 231 (490)
T 3ou5_A 213 AYARL---IDYARMREVCDEVK 231 (490)
T ss_dssp SCCSC---CCHHHHHHHHHHHT
T ss_pred cCccc---cCHHHHHHHHhhcc
Confidence 33321 23466777777643
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.27 Score=44.84 Aligned_cols=157 Identities=11% Similarity=0.118 Sum_probs=90.3
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-c---cCCCCC--CCcChHHHHHHHHHHcCC-CCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-L---KFPYIY--PDPESRRLRAALAKDSGL-ESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~---~~~~~Y--p~~g~~~lr~~la~~~~~-~~~~I~vt~Ga~~~l~~~ 162 (249)
++...||+..+ ...++ ..|.+.+++.+ + .+...+ |.....+|-+.|++.... ..+.++++++++++.+.+
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~A 141 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENA 141 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHH
Confidence 45667888766 44554 45788888764 2 222122 333345677888888754 346789999999999999
Q ss_pred HHHh--cCCCCeEEEcCCCChhHHHHH-HHCC-------------CEEEEecCCC-----C-CCCCHHHHHHh-------
Q 025730 163 MRCV--LDPGDKIVDCPPTFTMYEFDA-AVNG-------------AAVVKVPRKS-----D-FSLNVELIADA------- 213 (249)
Q Consensus 163 ~~~~--~~pGd~Vlv~~P~y~~~~~~~-~~~G-------------~~v~~v~~~~-----~-~~id~e~l~~~------- 213 (249)
++.. .....+|+...-+|......+ ...+ ..+..+|... . ..-+.+.+++.
T Consensus 142 lklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 221 (456)
T 4atq_A 142 VKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQ 221 (456)
T ss_dssp HHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHh
Confidence 8743 223478888888886433222 1111 1344555211 1 11223333332
Q ss_pred hccCCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 214 VEREKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 214 i~~~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+...++.+|++.--..-.|.+.++. +.+.++|++||
T Consensus 222 ~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~g 260 (456)
T 4atq_A 222 IGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKG 260 (456)
T ss_dssp TCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHT
T ss_pred hcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcC
Confidence 2223455666543344567765554 55889999986
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=93.99 E-value=0.36 Score=44.19 Aligned_cols=157 Identities=12% Similarity=0.117 Sum_probs=87.6
Q ss_pred CCCCeeeccCCC--CCCC-CCHHHHHHHHh-ccC---CCCC---CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDANE--NPYG-PPPEVREALGQ-LKF---PYIY---PDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~~--~~~~-~p~~v~~al~~-~~~---~~~Y---p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..+- +.++ ..|.+.+++.+ +.. ...+ +.....+|-+.|++....+.+.|+++++++++.+.+
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~A 144 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTM 144 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHH
Confidence 456678886663 3333 45777777764 322 1122 122244677788887766667899999999999999
Q ss_pred HHHhc-------CCC-CeEEEcCCCChhHHH-HHHHCCC-----------EEEEecCC------CCCCC-------CHHH
Q 025730 163 MRCVL-------DPG-DKIVDCPPTFTMYEF-DAAVNGA-----------AVVKVPRK------SDFSL-------NVEL 209 (249)
Q Consensus 163 ~~~~~-------~pG-d~Vlv~~P~y~~~~~-~~~~~G~-----------~v~~v~~~------~~~~i-------d~e~ 209 (249)
++... +++ .+|+...-+|..... .....|- ....++.. ..... ..++
T Consensus 145 iKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 224 (473)
T 4e3q_A 145 VKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARE 224 (473)
T ss_dssp HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHH
Confidence 88532 233 578888888753222 2222221 12233211 11111 1234
Q ss_pred HHHhhcc---CCceEEEEcCCCCccccCCChH---HHHHHHhhhhC
Q 025730 210 IADAVER---EKPKCIFLTSPNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 210 l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
+++.+.+ .++.+|++.--..-.|.+.++. +.+.++|++||
T Consensus 225 l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~g 270 (473)
T 4e3q_A 225 LEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYD 270 (473)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred HHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccc
Confidence 4444432 2344555443345567776655 55888999986
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=88.87 E-value=3.7 Score=40.24 Aligned_cols=86 Identities=10% Similarity=0.146 Sum_probs=53.8
Q ss_pred CeeeccCC--CCCCCC--CHHHHHHHHh-cc---CCC--CCCCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHHHH
Q 025730 96 DIVKIDAN--ENPYGP--PPEVREALGQ-LK---FPY--IYPDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLIMR 164 (249)
Q Consensus 96 ~~I~L~~~--~~~~~~--p~~v~~al~~-~~---~~~--~Yp~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~~~ 164 (249)
..||+..+ .+.++- .|++.+++.+ +. +.. .+......+|-+.|+++.+-. .+.++++++++++.+.+++
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK 460 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALK 460 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHH
Confidence 35666554 344443 4788888764 32 211 122222456778888777633 4689999999999998887
Q ss_pred Hhc-----CCC------------CeEEEcCCCCh
Q 025730 165 CVL-----DPG------------DKIVDCPPTFT 181 (249)
Q Consensus 165 ~~~-----~pG------------d~Vlv~~P~y~ 181 (249)
... ..| .+|+...-.|.
T Consensus 461 ~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syH 494 (831)
T 4a0g_A 461 MAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYH 494 (831)
T ss_dssp HHHHHHHHTTTC---------CCEEEEEETTCCC
T ss_pred HHHHHHHhhcCCCccccccccCccEEEEecCCcc
Confidence 642 122 36888888885
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 249 | ||||
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 5e-21 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 1e-20 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 1e-18 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 2e-18 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 4e-18 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 7e-18 | |
| d2f8ja1 | 334 | c.67.1.1 (A:1-334) Histidinol-phosphate aminotrans | 1e-09 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 5e-09 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 7e-09 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-08 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 3e-08 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 4e-08 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 5e-08 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 1e-06 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 6e-06 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 8e-06 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 3e-05 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 2e-04 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 5e-04 |
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 88.3 bits (217), Expect = 5e-21
Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 3/155 (1%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESD 147
LG P+ ++ AN NP G P V+ AL L YPD + L ALA+ + +
Sbjct: 16 VLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDADYFHLHQALARHHQVPAS 75
Query: 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207
IL G G E I + + + + P F Y A +G + + + +
Sbjct: 76 WILAGNGETESIFTVASGLKPR--RAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL 133
Query: 208 ELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIW 242
C+FL +PNNP G
Sbjct: 134 TDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQA 168
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 87.5 bits (216), Expect = 1e-20
Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 19/186 (10%)
Query: 71 LRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL------GQLKFPY 124
+ + P L + + + + D+ A E + P + EA G+ ++
Sbjct: 7 VESVSPS-MTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGP 65
Query: 125 IYPDPESRRLRAALAKDSG------LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
+P LR A+A+ +D+ILV G + I +M +++PGD+++ P
Sbjct: 66 AAGEPR---LREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAP 122
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSD--FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236
+ Y + V +P + F ++ E I A+ K K + +P+NP G
Sbjct: 123 FWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI-TPKTKLLVFNTPSNPTGMVYT 181
Query: 237 TSSWIW 242
Sbjct: 182 PDEVRA 187
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 82.1 bits (202), Expect = 1e-18
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 24/129 (18%)
Query: 123 PYIYPD---PESRRLRAALAKDSGL------ESDHILVGCGADELIDLIMR--------C 165
Y + S L + + + + +I+ G G +LI ++
Sbjct: 91 SYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTAT 150
Query: 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLT 225
P K+V P + ++ ++ N + + +T
Sbjct: 151 PDAPESKVVAHAPFYPVFREQTKYFDKKGY------VWAGNAANYVNVSN-PEQYIEMVT 203
Query: 226 SPNNPDGRF 234
SPNNP+G
Sbjct: 204 SPNNPEGLL 212
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 81.4 bits (199), Expect = 2e-18
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKP--EDIVKIDANENPYGPPPEVREALGQLK 121
R ++R L PYQ R+ V ++ANE P ++ +
Sbjct: 5 TDLARENVRNLTPYQS-----------ARRLGGNGDVWLNANEYPTAVEFQLTQQTLNR- 52
Query: 122 FPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT 181
YP+ + + + A+ +G++ + +LV GADE I+L++R +PG + P
Sbjct: 53 ----YPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTY 108
Query: 182 MY-EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW 240
A G VP ++ L+++ I+D + + K +++ SPNNP G+ +
Sbjct: 109 GMYSVSAETIGVECRTVPTLDNWQLDLQGISD--KLDGVKVVYVCSPNNPTGQLINPQDF 166
Query: 241 IW 242
Sbjct: 167 RT 168
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 80.3 bits (197), Expect = 4e-18
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 19/160 (11%)
Query: 90 LGRKPEDIVKIDANENPYGPPPEVREAL------GQLKFPYIYPDPESRRLRAALAK--- 140
+ +D++ + E + P ++E G + E LR A+A+
Sbjct: 20 IAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLE---LREAIAEKLK 76
Query: 141 ----DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVK 196
I+V GA++ + + L G++++ P F Y + G V+
Sbjct: 77 KQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVE 136
Query: 197 VPRKSD--FSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
VP + F LNV+ + V +K + + + SP NP G
Sbjct: 137 VPTYEEDEFRLNVDELKKYV-TDKTRALIINSPCNPTGAV 175
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 79.8 bits (196), Expect = 7e-18
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 13/180 (7%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFP 123
+ ++ +KP + +++L R+ D+V + A E + P V+EA + L
Sbjct: 2 RGLSRRVQAMKPS-ATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQG 60
Query: 124 YI-YPDPE-SRRLRAALAKDS------GLESDHILVGCGADELIDLIMRCVLDPGDKIVD 175
Y P LR ALA+ + + +V G + + + + +LDPGD+++
Sbjct: 61 KTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIV 120
Query: 176 CPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233
P + Y G VV+V F + E + A+ + K + + SPNNP G
Sbjct: 121 LSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAI-TPRTKALVVNSPNNPTGA 179
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Score = 55.6 bits (132), Expect = 1e-09
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 21/102 (20%)
Query: 71 LRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREA----LGQLKFPYIY 126
++ PY+ + D + NENP+ P ++ + L Y
Sbjct: 8 AKRAYPYET-------------EKRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRI-Y 53
Query: 127 PDPESRRLRAALAK---DSGLESDHILVGCGADELIDLIMRC 165
D L + L +++ VG GADE+I ++M
Sbjct: 54 YDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM 95
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 53.6 bits (127), Expect = 5e-09
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 12/185 (6%)
Query: 71 LRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDP 129
K F +S L ++ V + PPP + EA+ + L Y P
Sbjct: 7 TEAAKES----IFPRMS-GLAQRL-GAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPP 60
Query: 130 E-SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAA 188
LR ALA++ +E + ++V GA E + ++++ ++ PGD++V P F +Y DA
Sbjct: 61 AGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF 120
Query: 189 VNG--AAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--IWGI 244
+ G A +V++ + + + + + L +P NP G I +
Sbjct: 121 LAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARL 180
Query: 245 SSEHN 249
+ H+
Sbjct: 181 ARAHD 185
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 53.1 bits (126), Expect = 7e-09
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 16/125 (12%)
Query: 88 IQLG----RKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPE-SRRLRAALAK-- 140
IQ+G + D+++ NP E + K + D R A+AK
Sbjct: 39 IQMGLAENQLCLDLIEDWIKRNP--KGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFM 96
Query: 141 ------DSGLESDHILVGCGADELIDLIMRCVLDPGDK-IVDCPPTFTMYEFDAAVNGAA 193
+ + +++ GA + I+ C+ DPGD +V P G
Sbjct: 97 EKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQ 156
Query: 194 VVKVP 198
++ +
Sbjct: 157 LIPIH 161
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 52.7 bits (125), Expect = 1e-08
Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 22/126 (17%)
Query: 92 RKPEDIVKIDANENPY-----------GPPPEVREALGQLKFPYI--YPDPE-SRRLRAA 137
I+++ EN P + G+ F + + D + A
Sbjct: 33 HNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKA 92
Query: 138 LAK--------DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV 189
+ + +H+++ GA + + C+ DPG+ ++ P + ++ D
Sbjct: 93 MVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKW 152
Query: 190 NGAAVV 195
+
Sbjct: 153 RTGVEI 158
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 51.5 bits (121), Expect = 3e-08
Identities = 8/85 (9%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Query: 102 ANENPYGPPPEVREALGQ--LKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADEL 158
N+ G P++ + + + + Y D + + + + G +
Sbjct: 5 VNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQT 64
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMY 183
+ L P + ++
Sbjct: 65 NLIACSLALRPWEAVIATQLGHIST 89
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 51.0 bits (120), Expect = 4e-08
Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 9/180 (5%)
Query: 69 SHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYP 127
+ + PI + ++ I ++ + P E + + Y
Sbjct: 3 DRVLLTEES-PIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYS 61
Query: 128 DPE-SRRLRAALAK------DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF 180
LR A A ++ +++LV G E I + +PGD+I+ P +
Sbjct: 62 HSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFY 121
Query: 181 TMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW 240
Y A + G ++ V R+ + + ++ E+ K I L++P NP G
Sbjct: 122 ANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEM 181
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 50.8 bits (120), Expect = 5e-08
Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 11/174 (6%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQL--KFPY 124
+ + ++ + + + L +K ED++ + A E + P V E + K
Sbjct: 1 VSRRISEIPIS-KTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEV 59
Query: 125 IYPDPE-SRRLRAALAKD------SGLESDHILVGCGADELIDLIMRCVLDPGDK-IVDC 176
Y DP LR +AK + D ++V GA + + +LDPGD+ IV
Sbjct: 60 KYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFS 119
Query: 177 PPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNP 230
P + G V S + + K K + + SPNNP
Sbjct: 120 PVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNP 173
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 46.0 bits (107), Expect = 1e-06
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 107 YGPPPEVREALGQ-LKFP-YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
+ P + EAL Q L + Y ++ AA+A + ++S ++ G +
Sbjct: 11 FATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYM 70
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP 198
+ ++R + G+ +V P + + N V+ V
Sbjct: 71 VSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVA 110
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 44.2 bits (103), Expect = 6e-06
Identities = 17/146 (11%), Positives = 36/146 (24%), Gaps = 14/146 (9%)
Query: 97 IVKIDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGC 153
I + + Y P E R +L P + +R+ +
Sbjct: 60 IANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQS------LGGTGALR 113
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADA 213
E + + + PT+ + G ++ R D +
Sbjct: 114 IGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGF 173
Query: 214 VEREK-----PKCIFLTSPNNPDGRF 234
+ + + +NP G
Sbjct: 174 LSDLENAPEFSIFVLHACAHNPTGTD 199
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 43.7 bits (101), Expect = 8e-06
Identities = 19/151 (12%), Positives = 42/151 (27%), Gaps = 3/151 (1%)
Query: 102 ANENPYGPPPEVREALGQ--LKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADEL 158
+++N G PEV +AL + Y D + +++ + + + LV G
Sbjct: 8 SSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAAN 67
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREK 218
+ G+ E A + K+ + ++++ +
Sbjct: 68 ALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTRE 127
Query: 219 PKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249
T+ T E
Sbjct: 128 KVGDVHTTQPACVSITQATEVGSIYTLDEIE 158
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 3e-05
Identities = 37/173 (21%), Positives = 57/173 (32%), Gaps = 23/173 (13%)
Query: 95 EDIVKIDANENPYGPPPEVREALGQL----KFPYIYPDPE-SRRLRAALA----KDSGLE 145
D+V + + PP EA Y L LA + G E
Sbjct: 25 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQE 84
Query: 146 SD---HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD 202
D ++LV G + + ++D GD+++ P F YE + G V V K
Sbjct: 85 IDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPG 144
Query: 203 FSLNVELIADA-----------VEREKPKCIFLTSPNNPDGRFSWTSSWIWGI 244
N EL + + + K + L +PNNP G+
Sbjct: 145 PIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVA 197
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 40.1 bits (92), Expect = 2e-04
Identities = 33/184 (17%), Positives = 70/184 (38%), Gaps = 19/184 (10%)
Query: 72 RKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL------GQLKFPYI 125
KL + F +S L ++ + + + P ++E L G ++ +
Sbjct: 6 SKLPQLGTTI-FTQMS-ALAQQH-QAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPM 62
Query: 126 YPDPESRRLRAALA----KDSGLESD---HILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
LR A+A + G + D I V GA E + + ++ GD+++ P
Sbjct: 63 TGVQA---LREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDP 119
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238
++ Y A++G V ++ + A+ E+ + + L +P+NP +
Sbjct: 120 SYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQA 179
Query: 239 SWIW 242
+
Sbjct: 180 DFAA 183
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 38.2 bits (87), Expect = 5e-04
Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 9/149 (6%)
Query: 108 GPPPEVREALGQLKF--PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165
P E+R+A+ Q + DP L A+ G E + V G IM
Sbjct: 11 KPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKE-AALFVPSGTMGNQVSIMAH 69
Query: 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN------VELIADAVEREKP 219
+ I++ YE A + V+ P + + +
Sbjct: 70 TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRT 129
Query: 220 KCIFLTSPNNPDGRFSWTSSWIWGISSEH 248
I + + +N G I I +
Sbjct: 130 SLIAIENTHNRSGGRVVPLENIKEICTIA 158
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 249 | |||
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.96 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.96 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.95 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.94 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.94 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.94 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.94 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.94 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.93 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.93 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.93 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.92 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.91 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.91 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.9 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.9 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.87 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.87 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.86 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.86 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.85 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.85 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.84 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.82 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.8 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.78 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.75 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.66 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.64 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.55 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.54 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.46 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.43 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.39 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.27 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.25 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.24 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.24 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.22 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.19 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.19 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.13 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.09 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.09 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.07 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.04 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.04 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.0 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.99 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 98.98 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.96 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.95 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 98.92 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 98.92 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.91 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 98.88 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 98.86 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 98.85 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 98.81 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 98.69 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 98.63 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 98.59 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 98.58 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 98.58 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 98.36 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 98.32 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 98.31 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 98.05 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 97.9 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 97.79 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 97.78 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 97.59 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 97.44 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 97.3 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 96.92 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 96.85 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 96.58 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 96.44 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 96.34 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 95.99 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 95.85 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 94.22 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 93.5 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 91.34 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 91.04 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 90.98 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.96 E-value=1.9e-29 Score=226.34 Aligned_cols=180 Identities=23% Similarity=0.347 Sum_probs=156.4
Q ss_pred HHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCC-CcChHHHHHHHHHHc--
Q 025730 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYP-DPESRRLRAALAKDS-- 142 (249)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp-~~g~~~lr~~la~~~-- 142 (249)
+++++.++++ ++..+...++++...+.++|+|+.|++++++|+.+++++.+ +.. .++|+ ..|.++||+++++++
T Consensus 4 ~~~~~~~~~s-~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~ 82 (388)
T d1j32a_ 4 AARVESVSPS-MTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQR 82 (388)
T ss_dssp CHHHHTSCCC-SSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhHhhcCCcC-HHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3567778888 55667778888877778999999999999999999999876 433 36784 568999999999986
Q ss_pred ----CCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhcc
Q 025730 143 ----GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVER 216 (249)
Q Consensus 143 ----~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~ 216 (249)
.+++++|++|+|++++|.++++++++|||+|++++|+|..|...++..|++++.++.. ++|.+|+++++++++
T Consensus 83 ~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~- 161 (388)
T d1j32a_ 83 DNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT- 161 (388)
T ss_dssp HHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC-
T ss_pred hcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC-
Confidence 4678999999999999999999999999999999999999999999999999999843 567899999999998
Q ss_pred CCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 217 EKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 217 ~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
.+++++++||||||||.+++.+++ +.++|++||
T Consensus 162 ~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~ 196 (388)
T d1j32a_ 162 PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAG 196 (388)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCCCcccchhhhhhhhcccccCC
Confidence 789999999999999999998865 666788875
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=7.1e-30 Score=228.24 Aligned_cols=181 Identities=24% Similarity=0.419 Sum_probs=155.3
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCC-CcChHHHHHHHHHHc-
Q 025730 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYP-DPESRRLRAALAKDS- 142 (249)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp-~~g~~~lr~~la~~~- 142 (249)
+++++.+++|+ +...+...++++...+.++|+|+.|+++|++|+.+++++.+ +.. .++|+ ..|.++||+++++++
T Consensus 4 ~~~r~~~~~~s-~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~ 82 (382)
T d1b5pa_ 4 LSRRVQAMKPS-ATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFR 82 (382)
T ss_dssp CCHHHHHCCCC-HHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhh
Confidence 35667777777 34455666666666678899999999999999999999876 433 47895 468999999999987
Q ss_pred -----CCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhc
Q 025730 143 -----GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVE 215 (249)
Q Consensus 143 -----~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~ 215 (249)
++++++|++|+|++++|.+++++++++||.|++++|+|..|...++..|++++.++.. +++.+|+++++++++
T Consensus 83 ~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 162 (382)
T d1b5pa_ 83 RENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT 162 (382)
T ss_dssp HTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC
T ss_pred hhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC
Confidence 4688999999999999999999999999999999999999999999999999999843 567899999999997
Q ss_pred cCCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 216 REKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 216 ~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
.+++++++||||||||.+++.+++ +.++|++||
T Consensus 163 -~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~ 197 (382)
T d1b5pa_ 163 -PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHD 197 (382)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred -CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcC
Confidence 789999999999999999998855 677888875
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.95 E-value=6.5e-28 Score=215.23 Aligned_cols=176 Identities=22% Similarity=0.343 Sum_probs=145.1
Q ss_pred HHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCC-CcChHHHHHHHHHHcC-
Q 025730 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYP-DPESRRLRAALAKDSG- 143 (249)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp-~~g~~~lr~~la~~~~- 143 (249)
+.+++.++++. +..+..++.. .+++|+|+.|++++++|+.+++++.+ +.. ..+|+ ..|..+||+++|++++
T Consensus 3 s~~~~~~~~s~-ir~~~~~~~~----~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~ 77 (388)
T d1gdea_ 3 SDRLELVSASE-IRKLFDIAAG----MKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKK 77 (388)
T ss_dssp HHHHHHSCCCH-HHHHHHHHHH----CTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhhhhCCccH-HHHHHHHHhC----CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHh
Confidence 45555555542 2222222322 36799999999999999999999876 433 36795 5689999999999862
Q ss_pred ------CCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhc
Q 025730 144 ------LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVE 215 (249)
Q Consensus 144 ------~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~ 215 (249)
.++++|++|+|+++++.++++++++|||+|++++|+|..|...++..|++++.++.. ++|++|+++++++++
T Consensus 78 ~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 157 (388)
T d1gdea_ 78 QNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT 157 (388)
T ss_dssp HHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred hccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCc
Confidence 456789999999999999999999999999999999999999999999999999953 568999999999998
Q ss_pred cCCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 216 REKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 216 ~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++++++++||||||||.+++.+++ +.++|++||
T Consensus 158 -~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~ 192 (388)
T d1gdea_ 158 -DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHD 192 (388)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred -cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcC
Confidence 689999999999999999998855 666788875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.2e-27 Score=209.95 Aligned_cols=164 Identities=30% Similarity=0.562 Sum_probs=141.8
Q ss_pred CCCChHHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHH
Q 025730 61 LTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAK 140 (249)
Q Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~ 140 (249)
+....+.|+.++++.||.+... .| ....|+|+.||||+++++.+.+ ...++||+++..+||+++|+
T Consensus 2 ~~~~~l~~~~i~~~~~y~~~~~-------~~--~~~~i~L~~ne~p~~~~~~~~~-----~~l~rYPd~~~~~Lr~~ia~ 67 (354)
T d1fg7a_ 2 VTITDLARENVRNLTPYQSARR-------LG--GNGDVWLNANEYPTAVEFQLTQ-----QTLNRYPECQPKAVIENYAQ 67 (354)
T ss_dssp CCHHHHSCHHHHHCCCCCCCCC-------CT--TTCSEECSSCCCSSCCCCCCCC-----CCTTSCCCSSCHHHHHHHHH
T ss_pred cChHHhhChhhccCCCCCchhh-------cC--CCCCEEeeCCCCCCCCCHHHHH-----HHHhcCCCCcHHHHHHHHHH
Confidence 3456678899999999975432 22 3457999999999988754322 23478999988999999999
Q ss_pred HcCCCCCCEEEeCCHHHHHHHHHHHhcCCCC-eEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCc
Q 025730 141 DSGLESDHILVGCGADELIDLIMRCVLDPGD-KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKP 219 (249)
Q Consensus 141 ~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd-~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~ 219 (249)
++|+++++|++|+|++++|.++++++++||| .|++++|+|..|...++..|.+++.++.+++|.+|+++++.++. ++
T Consensus 68 ~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~d~~~l~~~~~--~~ 145 (354)
T d1fg7a_ 68 YAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD--GV 145 (354)
T ss_dssp HHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT--TE
T ss_pred HhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhhhhccCceeeccccccccccchhhhhhccc--cc
Confidence 9999999999999999999999999999998 58899999999999999999999999988899999999998774 79
Q ss_pred eEEEEcCCCCccccCCChHHH
Q 025730 220 KCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 220 k~i~l~~PnNPTG~~~~~~e~ 240 (249)
++|++||||||||.+++.+++
T Consensus 146 ~~v~~~~pnNPtG~~~~~~~~ 166 (354)
T d1fg7a_ 146 KVVYVCSPNNPTGQLINPQDF 166 (354)
T ss_dssp EEEEEESSCTTTCCCCCHHHH
T ss_pred ceeeccCCCccceeEeeeccc
Confidence 999999999999999887654
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=7.6e-27 Score=206.99 Aligned_cols=173 Identities=25% Similarity=0.388 Sum_probs=146.2
Q ss_pred HhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-cChHHHHHHHHHHcCCCCC
Q 025730 70 HLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-PESRRLRAALAKDSGLESD 147 (249)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-~g~~~lr~~la~~~~~~~~ 147 (249)
+.+.++++ ....+..++.+.| +|+|+.|.+.+++|+.+++++++ +...++|++ .|..+||+++|++++++++
T Consensus 6 ~~~~~~~~-~~~~~~~la~~~~-----~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~~~~~~~ 79 (368)
T d1v2da_ 6 RTEAAKES-IFPRMSGLAQRLG-----AVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPE 79 (368)
T ss_dssp GGGGC----CHHHHHHHHHHHT-----CEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGG
T ss_pred hhhhcCCC-HHHHHHHHhccCC-----CEEecCCCCCCCCCHHHHHHHHHHhhcccCCCCCcCCHHHHHHHHhhcccCCc
Confidence 34444443 2223455666654 59999999999999999999987 665678965 5799999999999999999
Q ss_pred CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC---CCCCCCCHHHHHHhhccCCceEEEE
Q 025730 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR---KSDFSLNVELIADAVEREKPKCIFL 224 (249)
Q Consensus 148 ~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~---~~~~~id~e~l~~~i~~~~~k~i~l 224 (249)
+|++|+|+++++..++..++++||.|++++|+|..|...++..|.+++.++. .+.+.+|++.++++++ ++++++++
T Consensus 80 ~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~~ 158 (368)
T d1v2da_ 80 SVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT-PRTRALLL 158 (368)
T ss_dssp GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC-TTEEEEEE
T ss_pred ceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhc-cCceEEEE
Confidence 9999999999999999999999999999999999999999999999988875 3557899999999998 68999999
Q ss_pred cCCCCccccCCChHHH--HHHHhhhhC
Q 025730 225 TSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 225 ~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+|||||||.+++.+++ +.++|++||
T Consensus 159 ~~p~NPtG~~~~~~~l~~l~~~a~~~~ 185 (368)
T d1v2da_ 159 NTPMNPTGLVFGERELEAIARLARAHD 185 (368)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCcccccCCHHHHHHHHHHHHHcC
Confidence 9999999999988755 667888875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.94 E-value=1.7e-26 Score=206.97 Aligned_cols=166 Identities=16% Similarity=0.291 Sum_probs=142.3
Q ss_pred HHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCCcChHHHHHHHHHHc----C--CCCCCEEEeCC
Q 025730 83 FEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKF-PYIYPDPESRRLRAALAKDS----G--LESDHILVGCG 154 (249)
Q Consensus 83 ~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~~g~~~lr~~la~~~----~--~~~~~I~vt~G 154 (249)
++.+.......+.++|+|+.|+++|++|+.+++++.+ ++. .++|++ +..+||+++++++ | +++++|++|+|
T Consensus 19 ~~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~-g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G 97 (394)
T d1c7na_ 19 WDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTG-PTEEYKKTVKKWMKDRHQWDIQTDWIINTAG 97 (394)
T ss_dssp HHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBC-CCHHHHHHHHHHHHHHHCCCCCGGGEEEESS
T ss_pred HHHHHHHhHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCCC-CCHHHHHHHHHHHHHhcCCCCCCcceEeecc
Confidence 4455556666677899999999999999999999876 433 367875 5789999999997 3 57899999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC---CCCCCCCHHHHHHhhccCCceEEEEcCCCCcc
Q 025730 155 ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR---KSDFSLNVELIADAVEREKPKCIFLTSPNNPD 231 (249)
Q Consensus 155 a~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~---~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPT 231 (249)
++++|.++++++++|||.|++++|.|.+|....+..|++.+.++. +..+.+|.+.++..+..++++++++|||||||
T Consensus 98 ~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPT 177 (394)
T d1c7na_ 98 VVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPV 177 (394)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTT
T ss_pred chhhhhhhhccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEeccccccc
Confidence 999999999999999999999999999999999999999999884 34466899999988876789999999999999
Q ss_pred ccCCChHHH--HHHHhhhhC
Q 025730 232 GRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~e~--i~~i~~~~~ 249 (249)
|.+++.+++ +..+|++||
T Consensus 178 G~v~s~~~l~~l~~~a~~~~ 197 (394)
T d1c7na_ 178 GRVWKKDELQKIKDIVLKSD 197 (394)
T ss_dssp TBCCCHHHHHHHHHHHHHSS
T ss_pred ceeccHHHhhhhhccccccc
Confidence 999998865 677888775
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.94 E-value=1.4e-26 Score=207.96 Aligned_cols=162 Identities=24% Similarity=0.433 Sum_probs=140.1
Q ss_pred HHHhCCCCCCeeeccCCCC---CCCCCHHHHHHHHh-ccCC-CCCCC-cChHHHHHHHHHHc------CCCCCCEEEeCC
Q 025730 87 SIQLGRKPEDIVKIDANEN---PYGPPPEVREALGQ-LKFP-YIYPD-PESRRLRAALAKDS------GLESDHILVGCG 154 (249)
Q Consensus 87 ~~~~g~~~~~~I~L~~~~~---~~~~p~~v~~al~~-~~~~-~~Yp~-~g~~~lr~~la~~~------~~~~~~I~vt~G 154 (249)
++++...+.++|+|+.|+| +|++|+.+++++.+ +..+ ++|++ .|.++||+++++++ .+++++|++|+|
T Consensus 22 a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G 101 (395)
T d1xi9a_ 22 ARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAA 101 (395)
T ss_dssp HHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred HHHHHHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccc
Confidence 4444445568999999986 78999999999876 4333 57954 58999999999986 367889999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEec--CCCCCCCCHHHHHHhhccCCceEEEEcCCCCccc
Q 025730 155 ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232 (249)
Q Consensus 155 a~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~--~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG 232 (249)
+++++.+++.+++++||+|++++|+|..|...++..|++++.++ ..++|.+|++++++.+. .+++++++||||||||
T Consensus 102 ~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~-~~~~~v~l~~P~NPTG 180 (395)
T d1xi9a_ 102 VTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT-DRTKAIAVINPNNPTG 180 (395)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC-TTEEEEEEESSCTTTC
T ss_pred cchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhc-ccccEEEecCCCCCcc
Confidence 99999999999999999999999999999999999999999998 34578899999999997 7899999999999999
Q ss_pred cCCChHHH--HHHHhhhhC
Q 025730 233 RFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 233 ~~~~~~e~--i~~i~~~~~ 249 (249)
.+++.+++ +..+|++||
T Consensus 181 ~~~s~~~~~~l~~~~~~~~ 199 (395)
T d1xi9a_ 181 ALYDKKTLEEILNIAGEYE 199 (395)
T ss_dssp CCCCHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHhhhhhcC
Confidence 99999855 677888775
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=4.6e-26 Score=201.36 Aligned_cols=153 Identities=18% Similarity=0.278 Sum_probs=133.7
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-ccC-CCCCCCcChHHHHHHHHHHc----C--CCCCCEEEeCCHHHHHHHHHHHhcC
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LKF-PYIYPDPESRRLRAALAKDS----G--LESDHILVGCGADELIDLIMRCVLD 168 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Yp~~g~~~lr~~la~~~----~--~~~~~I~vt~Ga~~~l~~~~~~~~~ 168 (249)
+|+|++|+++|++|+.+.+++.+ +.. .++|+..+..++|+++++++ | +++++|++|+|+++++..++.++++
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~ 80 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE 80 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccc
Confidence 58999999999999999999987 433 36796654478999999986 4 5789999999999999999999999
Q ss_pred CCCeEEEcCCCChhHHHHHHHCCCEEEEecC---CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--HHH
Q 025730 169 PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR---KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--IWG 243 (249)
Q Consensus 169 pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~---~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i~~ 243 (249)
|||+|++++|+|..|...++..|.+++.++. ++++.+|++.+++.+.+.++|+|+++|||||||.+++.+++ +.+
T Consensus 81 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~ 160 (361)
T d1d2fa_ 81 TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMAD 160 (361)
T ss_dssp TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHH
T ss_pred cccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhh
Confidence 9999999999999999999999999998884 34566899999999987899999999999999999988754 677
Q ss_pred HhhhhC
Q 025730 244 ISSEHN 249 (249)
Q Consensus 244 i~~~~~ 249 (249)
+|+++|
T Consensus 161 ~~~~~~ 166 (361)
T d1d2fa_ 161 LCERHG 166 (361)
T ss_dssp HHHHTT
T ss_pred hhhhhh
Confidence 888775
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=7.9e-26 Score=200.85 Aligned_cols=179 Identities=23% Similarity=0.373 Sum_probs=150.9
Q ss_pred HHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-cc-CCCCCCC-cChHHHHHHHHHHc---
Q 025730 69 SHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LK-FPYIYPD-PESRRLRAALAKDS--- 142 (249)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~-~~~~Yp~-~g~~~lr~~la~~~--- 142 (249)
+++..+..+.. ..+...++++...++++|+|+.|++++++|+.+++++.+ +. ..++|++ .|.++||+++++++
T Consensus 3 ~r~~~~~~~~~-~~~~~~a~~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~ 81 (375)
T d1o4sa_ 3 RRISEIPISKT-MELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGER 81 (375)
T ss_dssp HHHHHSCCCSS-HHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhhhhCCCCHH-HHHHHHHHHHHHCCCCeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhc
Confidence 45555555533 456777777777778899999999999999999999876 33 3367955 58999999999987
Q ss_pred ---CCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhccC
Q 025730 143 ---GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVERE 217 (249)
Q Consensus 143 ---~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~~ 217 (249)
.+++++|++|+|+++++.+++++++++||+|++++|+|..|.......|...+.++. ++++.+|.+.++.... .
T Consensus 82 ~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 160 (375)
T d1o4sa_ 82 YKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV-G 160 (375)
T ss_dssp HTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC-T
T ss_pred cccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhc-c
Confidence 367899999999999999999999999999999999999999999999999988874 3567889999988877 7
Q ss_pred CceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 218 KPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 218 ~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++++++++|||||||.+++.+++ +.++|++|+
T Consensus 161 ~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~ 194 (375)
T d1o4sa_ 161 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRN 194 (375)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcC
Confidence 89999999999999999998855 566788875
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=3.8e-26 Score=203.82 Aligned_cols=180 Identities=19% Similarity=0.267 Sum_probs=148.0
Q ss_pred HHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-cChHHHHHHHHHHc---
Q 025730 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-PESRRLRAALAKDS--- 142 (249)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-~g~~~lr~~la~~~--- 142 (249)
++++...+++ ++..+..++......+.++|+|+.|+|++++|+.+.+++.+ .....+||+ .|..+||+++++++
T Consensus 2 ~~r~~~~~~~-~i~~l~~~a~~~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 80 (389)
T d2gb3a1 2 SDRVLLTEES-PIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRR 80 (389)
T ss_dssp CHHHHSCCCC-TTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHT
T ss_pred ChhhhcCCCC-HHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHh
Confidence 3566666766 45666555555555567899999999999999999999987 344578965 58999999999987
Q ss_pred -C--CCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCC-CCCCHHHHHHhhccCC
Q 025730 143 -G--LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD-FSLNVELIADAVEREK 218 (249)
Q Consensus 143 -~--~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~-~~id~e~l~~~i~~~~ 218 (249)
| +++++|++|+|++++|.+++.+++++||.|++++|+|..|...++..|++++.++.+.+ +..+.+.+...+. ++
T Consensus 81 ~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 159 (389)
T d2gb3a1 81 QRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFIN-ER 159 (389)
T ss_dssp SCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCC-TT
T ss_pred cCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccccccCccccccccccccccchhhhhhhhcc-cC
Confidence 3 57899999999999999999999999999999999999999999999999999986433 3444555666565 78
Q ss_pred ceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 219 PKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 219 ~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+++++++|||||||.+++.+++ +.++|++||
T Consensus 160 ~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~ 192 (389)
T d2gb3a1 160 TKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHG 192 (389)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred ccEEEeCCCCccccccchHHHHHHHHhhcccCC
Confidence 9999999999999999988844 677888875
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.93 E-value=5.3e-25 Score=198.04 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=132.0
Q ss_pred CCCeeeccCCCCCCCC----CHHHHHHHHh-c--cCCCCCC-CcChHHHHHHHHHHc------------CCCCCCEEEeC
Q 025730 94 PEDIVKIDANENPYGP----PPEVREALGQ-L--KFPYIYP-DPESRRLRAALAKDS------------GLESDHILVGC 153 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~----p~~v~~al~~-~--~~~~~Yp-~~g~~~lr~~la~~~------------~~~~~~I~vt~ 153 (249)
++++|+|+.|+|++++ ++.+.+++.+ + ...++|+ ..|.++||+++|+++ ++++++|++|+
T Consensus 29 ~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~ 108 (412)
T d1bw0a_ 29 PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCS 108 (412)
T ss_dssp CSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEES
T ss_pred CCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEec
Confidence 4578999999987654 4667777764 2 2336795 568999999999986 26789999999
Q ss_pred CHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhccCCceEEEEcCCCCcc
Q 025730 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVEREKPKCIFLTSPNNPD 231 (249)
Q Consensus 154 Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPT 231 (249)
|++++|.+++++++++||+|++++|+|..|...++..|++++.++. ++++.++++.+++.+. .+++++++|||||||
T Consensus 109 G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~-~~~~~~~l~np~NPt 187 (412)
T d1bw0a_ 109 GGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD-DKTKLLIVTNPSNPC 187 (412)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC-TTEEEEEEESSCTTT
T ss_pred ccccchhhhhhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhh-ccccccccccccccc
Confidence 9999999999999999999999999999999999999999999984 3567899999999887 789999999999999
Q ss_pred ccCCChHHH--HHHHhhhhC
Q 025730 232 GRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~e~--i~~i~~~~~ 249 (249)
|.+++.+++ +.++|++||
T Consensus 188 G~~~~~~~~~~i~~~~~~~~ 207 (412)
T d1bw0a_ 188 GSNFSRKHVEDIVRLAEELR 207 (412)
T ss_dssp CCCCCHHHHHHHHHHHHHHT
T ss_pred cccchhhhccccccccccCC
Confidence 999988855 666777764
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.92 E-value=4.6e-25 Score=194.63 Aligned_cols=169 Identities=26% Similarity=0.367 Sum_probs=143.7
Q ss_pred CCCCCcHHHHHHHhCCCCCCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCH
Q 025730 77 YQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGA 155 (249)
Q Consensus 77 ~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga 155 (249)
..|++.+.+.++++|.++.++|||+.|+|++++|+.+++++.+ .....+||+++..+||+++|+++++++++|++|+|+
T Consensus 4 ~~hgg~~~~~~~~~g~~p~~~idls~~~np~~~p~~~~~a~~~~~~~~~~Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~ 83 (355)
T d1lc5a_ 4 TAHGGNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDADYFHLHQALARHHQVPASWILAGNGE 83 (355)
T ss_dssp CSSSCCCHHHHHHHTSCGGGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCCTTCHHHHHHHHHHHTSCGGGEEEESSH
T ss_pred CCCCCHHHHHHHHhCCChhheEEccCCCCCCCCCHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHhCCCHHHEEecccH
Confidence 3477888899999999999999999999999999999999987 445578998888999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 156 ~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
++++.+++..+. |+.+++..|.|..|.......+++++.++.. +++.++ +.+++++. .++|+|+++|||||||.
T Consensus 84 ~~~~~~~~~~~~--~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~-~~~~~v~l~nP~NPtG~ 159 (355)
T d1lc5a_ 84 TESIFTVASGLK--PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALT-PDLDCLFLCTPNNPTGL 159 (355)
T ss_dssp HHHHHHHHHHHC--CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCC-TTCCEEEEESSCTTTCC
T ss_pred HHHHHHHHhhhc--cccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccc-cccceeeeecccCcccc
Confidence 999998887653 4666777899999999999999999999853 345555 55666666 78999999999999999
Q ss_pred CCChHHH--HHHHhhhhC
Q 025730 234 FSWTSSW--IWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~--i~~i~~~~~ 249 (249)
+++.+++ +.++|++|+
T Consensus 160 ~~~~e~l~~i~~~a~~~~ 177 (355)
T d1lc5a_ 160 LPERPLLQAIADRCKSLN 177 (355)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhccccc
Confidence 9988755 666777765
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.91 E-value=1.7e-24 Score=195.27 Aligned_cols=153 Identities=24% Similarity=0.316 Sum_probs=131.8
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-ccC----CCCCC-CcChHHHHHHHHHHc----C--CC-CCCEEEeCCHHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LKF----PYIYP-DPESRRLRAALAKDS----G--LE-SDHILVGCGADELIDLI 162 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~~----~~~Yp-~~g~~~lr~~la~~~----~--~~-~~~I~vt~Ga~~~l~~~ 162 (249)
++|+|+.|++++++|+.+++++.+ +.. .++|+ ..|.++||++||+++ | ++ .++|++|+|++++|.++
T Consensus 27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~ 106 (418)
T d2r5ea1 27 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT 106 (418)
T ss_dssp CCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhh
Confidence 569999999999999999998875 322 25795 468999999999986 4 45 47999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCC----------CCCCCHHHHHHhhccCCceEEEEcCCCCccc
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS----------DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~----------~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG 232 (249)
++++++|||.|++++|+|..|...+...|++++.|+.+. .+.++++++.+... .++++++|||||||||
T Consensus 107 ~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~p~NPtG 185 (418)
T d2r5ea1 107 IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN-EKTKMIIINTPHNPLG 185 (418)
T ss_dssp HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC-TTEEEEEEESSCTTTC
T ss_pred hhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhh-ccccceecCCcCcccc
Confidence 999999999999999999999999999999999998532 25678999988886 7899999999999999
Q ss_pred cCCChHHH--HHHHhhhhC
Q 025730 233 RFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 233 ~~~~~~e~--i~~i~~~~~ 249 (249)
.+++.+++ +..+|++||
T Consensus 186 ~~~s~e~~~~l~~~a~~~~ 204 (418)
T d2r5ea1 186 KVMDRAELEVVANLCKKWN 204 (418)
T ss_dssp CCCCHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHhhhhhcCC
Confidence 99999855 667788875
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.2e-23 Score=185.86 Aligned_cols=153 Identities=21% Similarity=0.429 Sum_probs=131.0
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC-CCCC-CCcChHHHHHHHHHHc----C--CCCC-CEEEeCCHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF-PYIY-PDPESRRLRAALAKDS----G--LESD-HILVGCGADELIDLIMR 164 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~-~~~Y-p~~g~~~lr~~la~~~----~--~~~~-~I~vt~Ga~~~l~~~~~ 164 (249)
.++|+|+.|.|++++|+.+++++.+ +.. .++| |..|..+||+++|+++ | ++++ +|++|+|++++|.++++
T Consensus 26 ~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~ 105 (382)
T d1u08a_ 26 HQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAIT 105 (382)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHH
T ss_pred CCCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHh
Confidence 3679999999999999999998875 333 3679 5578999999999986 4 3455 59999999999999999
Q ss_pred HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC-CCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHH--H
Q 025730 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR-KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSW--I 241 (249)
Q Consensus 165 ~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~-~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~--i 241 (249)
+++++||.|++++|+|..|.......|+.++.++. +..+.+|++++++.++ .++++++++|||||||.+++.+++ +
T Consensus 106 ~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~v~~~~~~~~l 184 (382)
T d1u08a_ 106 ALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS-ERTRLVILNTPHNPSATVWQQADFAAL 184 (382)
T ss_dssp HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred hcccccceEEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhc-cCccEEEECCCCcccccccccccchhh
Confidence 99999999999999999999999999998888874 4567789999999988 689999999999999999988754 4
Q ss_pred HHHhhhh
Q 025730 242 WGISSEH 248 (249)
Q Consensus 242 ~~i~~~~ 248 (249)
..++.++
T Consensus 185 ~~~~~~~ 191 (382)
T d1u08a_ 185 WQAIAGH 191 (382)
T ss_dssp HHHHTTS
T ss_pred hhhhccc
Confidence 5555554
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=2.1e-23 Score=182.90 Aligned_cols=144 Identities=27% Similarity=0.394 Sum_probs=120.2
Q ss_pred CCCCCeeeccCCCCCCCCCHHHHHHHHh-ccC--CCCCCCcChHHHHHHHHHHcC---CCCCCEEEeCCHHHHHHHHHHH
Q 025730 92 RKPEDIVKIDANENPYGPPPEVREALGQ-LKF--PYIYPDPESRRLRAALAKDSG---LESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 92 ~~~~~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~~Yp~~g~~~lr~~la~~~~---~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
....++|+|+.|||||++|+.+.+++.+ +.. .+.||+.|.++||+++|++++ +++++|++|+|++++|.++++
T Consensus 16 ~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~~- 94 (334)
T d2f8ja1 16 TEKRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMML- 94 (334)
T ss_dssp CCCCCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHHH-
T ss_pred ccCCCceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHhh-
Confidence 3567899999999999999999998875 433 256788899999999999984 688999999999999988766
Q ss_pred hcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHh
Q 025730 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGIS 245 (249)
Q Consensus 166 ~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~ 245 (249)
+||+|++++|+|..|...++..|++++.+|.++++..+ +... .+++++++||||||||.+++.+++ .+++
T Consensus 95 ---~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~-----~~~~-~~~~~l~l~nP~NPtG~~~s~~~l-~~~~ 164 (334)
T d2f8ja1 95 ---MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIP-----EVNV-GEGDVVFIPNPNNPTGHVFEREEI-ERIL 164 (334)
T ss_dssp ---HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCC-----CCCC-CTTEEEEEESSCTTTCCCCCHHHH-HHHH
T ss_pred ---hccccccccccccccccchhccCCcccccccccccccc-----cccc-ccceEEEecccccccceeecHHHh-hccc
Confidence 46999999999999999999999999999987665543 1222 678999999999999999876554 4444
Q ss_pred h
Q 025730 246 S 246 (249)
Q Consensus 246 ~ 246 (249)
+
T Consensus 165 ~ 165 (334)
T d2f8ja1 165 K 165 (334)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.5e-23 Score=187.63 Aligned_cols=155 Identities=24% Similarity=0.334 Sum_probs=133.1
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-ccC---CCCCC-CcChHHHHHHHHHHc----CCC--C-CCEEEeCCHHHHHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-LKF---PYIYP-DPESRRLRAALAKDS----GLE--S-DHILVGCGADELIDL 161 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~~~---~~~Yp-~~g~~~lr~~la~~~----~~~--~-~~I~vt~Ga~~~l~~ 161 (249)
..++|+|+.|+|++++|+.+.+++.+ +.. .++|+ ..|.++||+++++++ |++ + ++|++|+|++++|.+
T Consensus 24 ~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~ 103 (418)
T d1w7la_ 24 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFT 103 (418)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHH
T ss_pred CCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHH
Confidence 35789999999999999999999876 432 25795 468999999999986 543 3 589999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC------------CCCCCCHHHHHHhhccCCceEEEEcCCCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK------------SDFSLNVELIADAVEREKPKCIFLTSPNN 229 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~------------~~~~id~e~l~~~i~~~~~k~i~l~~PnN 229 (249)
++++++++||.|++++|+|+.|...+...|++++.++.. .++.+|.+++..... .++++|+++||||
T Consensus 104 ~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~i~~~~p~N 182 (418)
T d1w7la_ 104 AFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT-SRTKALVLNTPNN 182 (418)
T ss_dssp HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC-TTEEEEEEESSCT
T ss_pred HHHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhcccc-ccccceeccCcCC
Confidence 999999999999999999999999999999999988732 346788888888877 7889999999999
Q ss_pred ccccCCChHHH--HHHHhhhhC
Q 025730 230 PDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 230 PTG~~~~~~e~--i~~i~~~~~ 249 (249)
|||.+++.+++ +.++|++||
T Consensus 183 PtG~~~s~~~~~~i~~~a~~~~ 204 (418)
T d1w7la_ 183 PLGKVFSREELELVASLCQQHD 204 (418)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHHhcC
Confidence 99999998855 667888875
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.87 E-value=9e-22 Score=177.95 Aligned_cols=156 Identities=21% Similarity=0.374 Sum_probs=125.4
Q ss_pred CCCCeeeccCCCCCCCCCHHHHHHHHhc-------------cCCCCCCC-cChHHHHHHHHHHc--------CCCCCCEE
Q 025730 93 KPEDIVKIDANENPYGPPPEVREALGQL-------------KFPYIYPD-PESRRLRAALAKDS--------GLESDHIL 150 (249)
Q Consensus 93 ~~~~~I~L~~~~~~~~~p~~v~~al~~~-------------~~~~~Yp~-~g~~~lr~~la~~~--------~~~~~~I~ 150 (249)
.+.++|+|+++||.+ ..+.+.+.+... ....+|++ .|.++||++||+|+ .+++++|+
T Consensus 34 np~G~i~l~~aen~l-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Iv 112 (428)
T d1iaya_ 34 NPNGVIQMGLAENQL-CLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp STTSBEECSSCCCCS-SHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred CCCceEEeecccCcc-chHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEE
Confidence 356799999999976 335555555431 01146865 48999999999986 25688999
Q ss_pred EeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHH-CCCEEEEecCC--CCCCCCHHHHHHhhc-----cCCceEE
Q 025730 151 VGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV-NGAAVVKVPRK--SDFSLNVELIADAVE-----REKPKCI 222 (249)
Q Consensus 151 vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~-~G~~v~~v~~~--~~~~id~e~l~~~i~-----~~~~k~i 222 (249)
+|+|++++|.+++.++++|||+|++++|+|..|...+.. .|++++.++.+ ++|.+|+++++.+++ ..+++++
T Consensus 113 it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 192 (428)
T d1iaya_ 113 MAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGL 192 (428)
T ss_dssp EEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEE
Confidence 999999999999999999999999999999998877765 58999999853 568899998876542 2578899
Q ss_pred EEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 223 FLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 223 ~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+++|||||||.+++.+++ +.++|++||
T Consensus 193 ~l~nP~NPtG~~~s~~~~~~i~~~a~~~~ 221 (428)
T d1iaya_ 193 ILTNPSNPLGTTLDKDTLKSVLSFTNQHN 221 (428)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHTTT
T ss_pred EEccCCCcccccccccccchhheeeccCc
Confidence 999999999999998754 677888875
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.87 E-value=1.1e-21 Score=175.74 Aligned_cols=169 Identities=14% Similarity=0.094 Sum_probs=129.6
Q ss_pred CcHHHHHHHhCC-CCCCeeeccCCC---CCC--CCCHHHHHHHHhc---cCCCCC-CCcChHHHHHHHHHHcC------C
Q 025730 81 LPFEVLSIQLGR-KPEDIVKIDANE---NPY--GPPPEVREALGQL---KFPYIY-PDPESRRLRAALAKDSG------L 144 (249)
Q Consensus 81 ~~~~~~~~~~g~-~~~~~I~L~~~~---~~~--~~p~~v~~al~~~---~~~~~Y-p~~g~~~lr~~la~~~~------~ 144 (249)
.++..+...+.. +.+++|+|+.|. +.. +..+.|++++..+ ...+.| |..|.++||+++++++. +
T Consensus 13 d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~ 92 (401)
T d7aata_ 13 DPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAF 92 (401)
T ss_dssp CHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHH
T ss_pred ChHHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCccc
Confidence 344445443322 335679999993 222 3457888887652 223579 56799999999999972 3
Q ss_pred CCCCEEEeCCH-----HHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhc--
Q 025730 145 ESDHILVGCGA-----DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVE-- 215 (249)
Q Consensus 145 ~~~~I~vt~Ga-----~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~-- 215 (249)
+++.|+++.|+ .+++.++++++++|||+|++++|+|..|...++.+|++++.++. ++++.+|++.+.+.+.
T Consensus 93 ~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (401)
T d7aata_ 93 KSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI 172 (401)
T ss_dssp HTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS
T ss_pred CcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcC
Confidence 56777665443 35788888899999999999999999999999999999999994 4567789999888774
Q ss_pred cCCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 216 REKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 216 ~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
.++++++++++||||||.+++.+++ +.++|++||
T Consensus 173 ~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~ 208 (401)
T d7aata_ 173 PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRN 208 (401)
T ss_dssp CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred CCceEEEEecCCCCCccccCCHHHHHHHHHHHhcce
Confidence 2578999999999999999999865 777898875
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.86 E-value=1.8e-21 Score=176.12 Aligned_cols=155 Identities=16% Similarity=0.307 Sum_probs=124.7
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh-c-------------cCCCCCCCc-ChHHHHHHHHHHc--------CCCCCCEE
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ-L-------------KFPYIYPDP-ESRRLRAALAKDS--------GLESDHIL 150 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~-~-------------~~~~~Yp~~-g~~~lr~~la~~~--------~~~~~~I~ 150 (249)
+.++|+|+++||.+- .+.+.+-+.. . .....|++. |.++||+++|+++ .+++++|+
T Consensus 35 p~G~i~l~~~en~l~-~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~ 113 (431)
T d1m7ya_ 35 TNGIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLV 113 (431)
T ss_dssp TTSBEECSSCCCCSC-HHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEE
T ss_pred CCcEEEeeccccccc-HHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEE
Confidence 456899999999873 3444444432 1 011358664 8999999999986 25788999
Q ss_pred EeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHH-CCCEEEEecCC--CCCCCCHHHHHHhhcc-----CCceEE
Q 025730 151 VGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV-NGAAVVKVPRK--SDFSLNVELIADAVER-----EKPKCI 222 (249)
Q Consensus 151 vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~-~G~~v~~v~~~--~~~~id~e~l~~~i~~-----~~~k~i 222 (249)
+|+|++++|.++++++++|||+|++++|+|..|...+.. .|++++.++.+ ++|.+|++.+++.+++ .+++++
T Consensus 114 it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 193 (431)
T d1m7ya_ 114 LTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGV 193 (431)
T ss_dssp EEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred ECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEE
Confidence 999999999999999999999999999999988887765 58999999854 4578999999887742 467899
Q ss_pred EEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 223 FLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 223 ~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++||||||||.+++.+++ +.++|++||
T Consensus 194 ~~~nP~NPtG~~~s~~~l~~i~~~a~~~~ 222 (431)
T d1m7ya_ 194 LVTNPSNPLGTTMTRNELYLLLSFVEDKG 222 (431)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred EecCccccccccccccccccccccccccC
Confidence 999999999999998855 677888775
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=3.4e-21 Score=172.32 Aligned_cols=178 Identities=16% Similarity=0.113 Sum_probs=132.4
Q ss_pred hhccCCCCCCCcHHHHHHHhC-CCCCCeeeccCCC---CC--CCCCHHHHHHHHhc----cCCCCC-CCcChHHHHHHHH
Q 025730 71 LRKLKPYQPILPFEVLSIQLG-RKPEDIVKIDANE---NP--YGPPPEVREALGQL----KFPYIY-PDPESRRLRAALA 139 (249)
Q Consensus 71 ~~~l~~~~~~~~~~~~~~~~g-~~~~~~I~L~~~~---~~--~~~p~~v~~al~~~----~~~~~Y-p~~g~~~lr~~la 139 (249)
|+++.+|. ..++..+..++. .+.++.|+|+.|. +. .+.++.|.+|...+ ...+.| |..|.++||++++
T Consensus 2 ~~~~~~~~-~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia 80 (397)
T d3tata_ 2 FQKVDAYA-GDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA 80 (397)
T ss_dssp CCCCCCCC-CCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHH
T ss_pred cccCCCCC-CCcHHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHH
Confidence 34556663 344444443332 2235569999993 33 23457888887642 123569 6679999999999
Q ss_pred HHcC------CCCCCEEEeCCHHHH----HHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCH
Q 025730 140 KDSG------LESDHILVGCGADEL----IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNV 207 (249)
Q Consensus 140 ~~~~------~~~~~I~vt~Ga~~~----l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~ 207 (249)
+++. +++++|+++.|++++ +.+++..++.|||+|++++|+|..|...++..|++++.+|.. ..+..|.
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~ 160 (397)
T d3tata_ 81 PLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRF 160 (397)
T ss_dssp HHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCH
T ss_pred HHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccch
Confidence 9973 357788887776664 666677778999999999999999999999999999999953 4466788
Q ss_pred HHHHHhhcc--CCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 208 ELIADAVER--EKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 208 e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+.+.+.+.. .++++++++|||||||.+++.+++ +.++|++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~ 206 (397)
T d3tata_ 161 NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARE 206 (397)
T ss_dssp HHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcC
Confidence 888877642 467889999999999999999865 777888875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=1.9e-21 Score=174.93 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=122.5
Q ss_pred CCCeeeccCCCCCCC--CCHHHHHHHHh-cc----CCCCCC-CcChHHHHHHHHHHc----C---CCCCCEEEeCCHHHH
Q 025730 94 PEDIVKIDANENPYG--PPPEVREALGQ-LK----FPYIYP-DPESRRLRAALAKDS----G---LESDHILVGCGADEL 158 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~--~p~~v~~al~~-~~----~~~~Yp-~~g~~~lr~~la~~~----~---~~~~~I~vt~Ga~~~ 158 (249)
.+++|+|+.|.|+.. |.+.+.++++. +. ...+|+ ..|.++||++||+++ | +++++|++|+|++++
T Consensus 37 ~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~a 116 (420)
T d1vp4a_ 37 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQA 116 (420)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHH
T ss_pred CCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhh
Confidence 467999999987643 34455555543 21 225795 468999999999986 3 578999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc--------CCceEEEEcCCCCc
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER--------EKPKCIFLTSPNNP 230 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~--------~~~k~i~l~~PnNP 230 (249)
+.+++.++++|||.|++++|+|..|...++..|++++.++.++ .++|++.+...+.+ ....++++++||||
T Consensus 117 l~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NP 195 (420)
T d1vp4a_ 117 LDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED-DGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 195 (420)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-TEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTT
T ss_pred HHHHHHhhhccccccccccccccchhHHHHHHhhhcccccccc-cccccchhhhhhhhhHHHhhccccceeeEecCCCCc
Confidence 9999999999999999999999999999999999999999743 46788877654321 22345667899999
Q ss_pred cccCCChHHH--HHHHhhhhC
Q 025730 231 DGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 231 TG~~~~~~e~--i~~i~~~~~ 249 (249)
||.+++.+++ +..+|++|+
T Consensus 196 tG~~~s~~~~~~i~~~a~~~~ 216 (420)
T d1vp4a_ 196 AGVTTSLEKRKALVEIAEKYD 216 (420)
T ss_dssp TCCCCCHHHHHHHHHHHHHTT
T ss_pred cchhhhhhhhhhhhhhhhccc
Confidence 9999988854 777888875
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.85 E-value=4.5e-21 Score=172.32 Aligned_cols=177 Identities=14% Similarity=0.146 Sum_probs=126.3
Q ss_pred hccCCCCCCCcHHHHHHHhCCC-CCCeeeccCCC---CC--CCCCHHHHHHHHhc----cCCCCC-CCcChHHHHHHHHH
Q 025730 72 RKLKPYQPILPFEVLSIQLGRK-PEDIVKIDANE---NP--YGPPPEVREALGQL----KFPYIY-PDPESRRLRAALAK 140 (249)
Q Consensus 72 ~~l~~~~~~~~~~~~~~~~g~~-~~~~I~L~~~~---~~--~~~p~~v~~al~~~----~~~~~Y-p~~g~~~lr~~la~ 140 (249)
.++.+.++ .++..++.++... .+++|+|++|. +. .+.++.|.++.+.+ ...++| |..|.++||+++++
T Consensus 7 ~~~~~~~~-~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~ 85 (412)
T d1ajsa_ 7 AEVPQAQP-VLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASR 85 (412)
T ss_dssp TTCCCCCC-CHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHH
T ss_pred hhCCcCCC-ChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHH
Confidence 33444433 4455666666543 45679999992 32 23447777775542 223679 67899999999999
Q ss_pred Hc-C-----CCCCC--EEEeCCHHHHHHHHHH-------HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEec---CCCC
Q 025730 141 DS-G-----LESDH--ILVGCGADELIDLIMR-------CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP---RKSD 202 (249)
Q Consensus 141 ~~-~-----~~~~~--I~vt~Ga~~~l~~~~~-------~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~---~~~~ 202 (249)
++ + ++.++ ++.|.|++.++..+.. .+++|||+|++++|+|..|...++..|++++.++ .++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~ 165 (412)
T d1ajsa_ 86 LALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEK 165 (412)
T ss_dssp HHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTT
T ss_pred HHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeeccccccc
Confidence 97 1 33454 4456665555554443 3479999999999999999999999999876654 2345
Q ss_pred CCCCHHHHHHhhc--cCCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 203 FSLNVELIADAVE--REKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 203 ~~id~e~l~~~i~--~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+..|++.+++.+. ..+++++++|+||||||.+++.+++ +..+|++||
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~ 216 (412)
T d1ajsa_ 166 RGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRF 216 (412)
T ss_dssp TEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCC
Confidence 6788888877653 2678999999999999999999855 778898886
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.84 E-value=1e-20 Score=169.07 Aligned_cols=180 Identities=19% Similarity=0.260 Sum_probs=130.8
Q ss_pred CChHHHHHhhccCCCCCCCcHHHHHHHhCCCCCCeeeccCCCCCCC--CCHHHHHHHHh-cc----CCCCCCC-cChHHH
Q 025730 63 GDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYG--PPPEVREALGQ-LK----FPYIYPD-PESRRL 134 (249)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~I~L~~~~~~~~--~p~~v~~al~~-~~----~~~~Yp~-~g~~~l 134 (249)
...+++++...++.+. +.++...... +++|+|+.|.|... |.+.+.+++.+ +. ...+|++ .|.++|
T Consensus 3 ~~~~~~~~~~~~~~s~----ire~~~~~~~--~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~l 76 (403)
T d1wsta1 3 FDSFFSEKAMLMKASE----VRELLKLVET--SDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPL 76 (403)
T ss_dssp GGGGCCHHHHHCCCHH----HHHHHHHHTS--SSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHH
T ss_pred HHHHHHHHHhcCCCcH----HHHHHHHhCC--CCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHH
Confidence 3455566666665432 3334333333 57899999987543 33455555554 21 1257954 689999
Q ss_pred HHHHHHHc------CCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHH
Q 025730 135 RAALAKDS------GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208 (249)
Q Consensus 135 r~~la~~~------~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e 208 (249)
|+++|+++ .+++++|++|+|+++++.+++.+++++||+|++++|+|..|...+...|++++.|+.+++ ..+..
T Consensus 77 R~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~ 155 (403)
T d1wsta1 77 RLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDK-GMRVD 155 (403)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-EECHH
T ss_pred HHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhccccceeEeeccc-CCccc
Confidence 99999996 378999999999999999999999999999999999999999999999999999996433 22222
Q ss_pred HHH----Hhhc--cCCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 209 LIA----DAVE--REKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 209 ~l~----~~i~--~~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
.+. +... +....++++++||||||.+++.+++ +..+|++||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~ 204 (403)
T d1wsta1 156 LLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYD 204 (403)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcC
Confidence 222 1111 1345677888999999999998854 677888885
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=8.2e-20 Score=162.73 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=126.9
Q ss_pred hhccCCCCCCCcHHHHHHHhCC-CCCCeeeccCCC---CC--CCCCHHHHHHHHhc---cCCCCC-CCcChHHHHHHHHH
Q 025730 71 LRKLKPYQPILPFEVLSIQLGR-KPEDIVKIDANE---NP--YGPPPEVREALGQL---KFPYIY-PDPESRRLRAALAK 140 (249)
Q Consensus 71 ~~~l~~~~~~~~~~~~~~~~g~-~~~~~I~L~~~~---~~--~~~p~~v~~al~~~---~~~~~Y-p~~g~~~lr~~la~ 140 (249)
|.++++..+ .++..+..++.. +.++.|+|+.|. ++ .++++.|.++++.+ ...+.| |..|.++||+++++
T Consensus 2 ~~~~~~~~~-d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~ 80 (394)
T d2ay1a_ 2 LGNLKPQAP-DKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE 80 (394)
T ss_dssp GGGCCCCCC-CSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCC-ChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHH
Confidence 455666644 455566554432 335679999993 22 23457888887653 223579 67799999999999
Q ss_pred Hc---CC--CCCCEEEeCCH--HHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHH
Q 025730 141 DS---GL--ESDHILVGCGA--DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIA 211 (249)
Q Consensus 141 ~~---~~--~~~~I~vt~Ga--~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~ 211 (249)
++ +. .....+++.|+ ...+.+.+..+.++||.|++++|+|..|...++.+|++++.++. +..+..+.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (394)
T d2ay1a_ 81 LILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMK 160 (394)
T ss_dssp HHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHH
T ss_pred HHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHH
Confidence 96 11 12233333444 44466666777899999999999999999999999999999985 344556777766
Q ss_pred Hhhcc--CCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 212 DAVER--EKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 212 ~~i~~--~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
+.... .+++++++++||||||.+++.+++ +..+|++|+
T Consensus 161 ~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~ 202 (394)
T d2ay1a_ 161 ADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTG 202 (394)
T ss_dssp HHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcce
Confidence 65432 567788889999999999998855 777888875
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=4.2e-19 Score=158.41 Aligned_cols=155 Identities=10% Similarity=0.096 Sum_probs=116.0
Q ss_pred CCeeeccCC---CCC--CCCCHHHHHHHHhc---cCCCCC-CCcChHHHHHHHHHHcC------CCCCC--EEEeCCHHH
Q 025730 95 EDIVKIDAN---ENP--YGPPPEVREALGQL---KFPYIY-PDPESRRLRAALAKDSG------LESDH--ILVGCGADE 157 (249)
Q Consensus 95 ~~~I~L~~~---~~~--~~~p~~v~~al~~~---~~~~~Y-p~~g~~~lr~~la~~~~------~~~~~--I~vt~Ga~~ 157 (249)
++.|+|+.| ++. .+.++.|.+++..+ ...+.| |..|.++||+++++++. +.++. ++++.|+..
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (396)
T d2q7wa1 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTG 105 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred CCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHH
Confidence 456999999 232 34557888887652 233579 56799999999999861 22333 446777776
Q ss_pred HHHHHHH--HhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhcc--CCceEEEEcCCCCcc
Q 025730 158 LIDLIMR--CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVER--EKPKCIFLTSPNNPD 231 (249)
Q Consensus 158 ~l~~~~~--~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~--~~~k~i~l~~PnNPT 231 (249)
++.+++. ..+.+||.|++++|+|+.|...+..+|++++.++. ++++..+.+.+++.... .+++++++++|||||
T Consensus 106 ~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPT 185 (396)
T d2q7wa1 106 ALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPT 185 (396)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTT
T ss_pred HHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCc
Confidence 6665554 44789999999999999999999999999999994 34455677776665432 567899999999999
Q ss_pred ccCCChHHH--HHHHhhhhC
Q 025730 232 GRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 232 G~~~~~~e~--i~~i~~~~~ 249 (249)
|.+++.+++ +..+|++|+
T Consensus 186 G~~~s~e~~~~l~~la~~~~ 205 (396)
T d2q7wa1 186 GIDPTLEQWQTLAQLSVEKG 205 (396)
T ss_dssp CCCCCHHHHHHHHHHHHHHT
T ss_pred CeecCHHHHHHHHHHHhcCC
Confidence 999999855 777888875
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.78 E-value=2.1e-18 Score=154.89 Aligned_cols=168 Identities=16% Similarity=0.192 Sum_probs=122.2
Q ss_pred cHHHHHHHhCCC-CCCeeeccCC---CCCC--CCCHHHHHHHHhc----cCCCCC-CCcChHHHHHHHHHHc-C-----C
Q 025730 82 PFEVLSIQLGRK-PEDIVKIDAN---ENPY--GPPPEVREALGQL----KFPYIY-PDPESRRLRAALAKDS-G-----L 144 (249)
Q Consensus 82 ~~~~~~~~~g~~-~~~~I~L~~~---~~~~--~~p~~v~~al~~~----~~~~~Y-p~~g~~~lr~~la~~~-~-----~ 144 (249)
++..++.++..+ .+++|+|+.| ++.. +.++.|+++.+.+ ...+.| |..|.++||+++++++ + +
T Consensus 15 ~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~ 94 (412)
T d1yaaa_ 15 ALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDAL 94 (412)
T ss_dssp TTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccc
Confidence 445566665543 4557999998 3333 2347788776542 223679 5679999999999986 2 1
Q ss_pred CCCCEE--EeCCHHHHHHHHH--HHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC--CCCCCCCHHHHHHhhcc--
Q 025730 145 ESDHIL--VGCGADELIDLIM--RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVER-- 216 (249)
Q Consensus 145 ~~~~I~--vt~Ga~~~l~~~~--~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~--~~~~~id~e~l~~~i~~-- 216 (249)
..+.++ .+.|+..++..++ ..++.|||.|++++|+|..|...++..|++++.++. ++.+.+|.+.+++.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (412)
T d1yaaa_ 95 QEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAP 174 (412)
T ss_dssp HTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSC
T ss_pred cccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccCC
Confidence 233333 3445555554443 445789999999999999999999999999999994 45677888888887752
Q ss_pred CCceEEEEcCCCCccccCCChHHH--HHHHhhhhC
Q 025730 217 EKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEHN 249 (249)
Q Consensus 217 ~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~~ 249 (249)
++++++++++||||||.+++.+++ +..+|++++
T Consensus 175 ~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~ 209 (412)
T d1yaaa_ 175 EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKN 209 (412)
T ss_dssp TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred CceEEEEecCCCCCccccCCHHHHHHHHhhhccCC
Confidence 456788999999999999998855 677888775
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.4e-17 Score=147.73 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=122.0
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCc--C-----------hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 98 VKIDANENPYGPPPEVREALGQ-LKFPYIYPDP--E-----------SRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~--g-----------~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
|.|+.+.. -+.++.+++++.+ +.....|+++ + .+++|+.+|+++|+++++|++|+|+++++..++
T Consensus 4 iYlD~aa~-~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~ 82 (391)
T d1p3wa_ 4 IYLDYSAT-TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAI 82 (391)
T ss_dssp EECBTTTC-CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred EEeeCccc-cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHH
Confidence 67777654 3577899999987 4433444332 1 346889999999999999999999999999888
Q ss_pred HHh----cCCCCeEEEcCCCChhHHHH---HHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 164 RCV----LDPGDKIVDCPPTFTMYEFD---AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 164 ~~~----~~pGd~Vlv~~P~y~~~~~~---~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
.++ +++||+|++.++.|+.+... ++..|+++..++.+.++.+|+++++++++ ++|++|++++++||||.++
T Consensus 83 ~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~-~~T~lv~is~~~n~tG~~~- 160 (391)
T d1p3wa_ 83 KGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR-DDTILVSIMHVNNEIGVVQ- 160 (391)
T ss_dssp HHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC-TTEEEEECCSBCTTTCCBC-
T ss_pred hhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCC-CCcEEEEEECCCCCCeeEC-
Confidence 765 47999999999999865443 34579999999988888999999999998 8999999999999999996
Q ss_pred hHHHHHHHhhhhC
Q 025730 237 TSSWIWGISSEHN 249 (249)
Q Consensus 237 ~~e~i~~i~~~~~ 249 (249)
+.+.+..+|++||
T Consensus 161 ~~~~I~~~~~~~~ 173 (391)
T d1p3wa_ 161 DIAAIGEMCRARG 173 (391)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHhccCC
Confidence 5566788888875
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=6.5e-16 Score=134.65 Aligned_cols=116 Identities=21% Similarity=0.200 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC--CCCCCCHH
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVE 208 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~--~~~~id~e 208 (249)
...+++.+|+++|. +++++|+|+++++.+++.++++|||+|+++.++|......++..|++++.+|.+ .++.+|++
T Consensus 49 ~~~~~~~~A~~~g~--e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~ 126 (364)
T d2e7ja1 49 HDFIHNQLPKFLGC--DVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPE 126 (364)
T ss_dssp HHHHHTHHHHHTTS--SEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHH
T ss_pred HHHHHHHHHHHhCc--CEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhccceEEEeeeccccccccCHH
Confidence 35589999999995 689999999999999999999999999999999987777788899999999954 46789999
Q ss_pred HHHHhhcc----CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 209 LIADAVER----EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 209 ~l~~~i~~----~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++++++++ .++++|++++|+||||.+. +.+.+.++|++||
T Consensus 127 ~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~-~l~~I~~ia~~~~ 170 (364)
T d2e7ja1 127 NFAQTIEETKKRGEVVLALITYPDGNYGNLP-DVKKIAKVCSEYD 170 (364)
T ss_dssp HHHHHHHHHTTTSCEEEEEEESSCTTTCCCC-CHHHHHHHHHTTT
T ss_pred HHHhhhhhhcccCCceEEEeecCCCCCceee-cchhheecccccc
Confidence 99999853 2356899999999999995 5667888999986
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.64 E-value=7.5e-17 Score=145.61 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=103.8
Q ss_pred CCCeeeccCCCCCCCCCHHHHHHHHh--c--c-CCCCC--CCc---ChHHHHHHHHHHcC------CCCCCEEEeCCHHH
Q 025730 94 PEDIVKIDANENPYGPPPEVREALGQ--L--K-FPYIY--PDP---ESRRLRAALAKDSG------LESDHILVGCGADE 157 (249)
Q Consensus 94 ~~~~I~L~~~~~~~~~p~~v~~al~~--~--~-~~~~Y--p~~---g~~~lr~~la~~~~------~~~~~I~vt~Ga~~ 157 (249)
+.-++|++.|+|.+..|-+...+-.. + . +...| .+. -.++|+++|++++. .+..+|++|+|++|
T Consensus 55 ~~~~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gste 134 (425)
T d2hoxa1 55 QGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQ 134 (425)
T ss_dssp TTCCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHH
T ss_pred CCceeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHH
Confidence 34579999999998655454433332 1 1 11223 321 14799999999872 24457999999999
Q ss_pred HHHHHHHHh--------cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCC
Q 025730 158 LIDLIMRCV--------LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNN 229 (249)
Q Consensus 158 ~l~~~~~~~--------~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnN 229 (249)
+|+++++++ +.|||+|+++.|+|+.|...++..|.+... |.+|.+.++++++ .++++++||||||
T Consensus 135 li~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~------~~~D~~~~~~~~~-~~~~ii~l~sPnN 207 (425)
T d2hoxa1 135 LIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV------WAGNAANYVNVSN-PEQYIEMVTSPNN 207 (425)
T ss_dssp HHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE------EEEEGGGGTTCSC-GGGEEEEEESSCT
T ss_pred HHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCc------cCCCHHHHHhhCC-CCceEEEEECCCC
Confidence 999999998 579999999999999999999998876544 4567788888777 6899999999999
Q ss_pred ccccCC
Q 025730 230 PDGRFS 235 (249)
Q Consensus 230 PTG~~~ 235 (249)
|||.+.
T Consensus 208 PtG~l~ 213 (425)
T d2hoxa1 208 PEGLLR 213 (425)
T ss_dssp TTCCCC
T ss_pred CCcchh
Confidence 999874
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=8.7e-14 Score=122.16 Aligned_cols=148 Identities=20% Similarity=0.203 Sum_probs=113.0
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-ccCCCCCCCc----------ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH-
Q 025730 98 VKIDANENPYGPPPEVREALGQ-LKFPYIYPDP----------ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC- 165 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~~----------g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~- 165 (249)
|.|+.+.. -++|+.+.+++.+ +......|.. ..++.|+.+++++|+++++|++++|+++++..++..
T Consensus 3 iyld~a~~-~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~ 81 (376)
T d1eg5a_ 3 VYFDNNAT-TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTV 81 (376)
T ss_dssp EECBTTTC-CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHH
T ss_pred EEEECccc-ccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcc
Confidence 66766543 2356788888765 3322111211 134678999999999999999999999999998864
Q ss_pred ---hcCCCCeEEEcCCCChhHHH---HHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHH
Q 025730 166 ---VLDPGDKIVDCPPTFTMYEF---DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239 (249)
Q Consensus 166 ---~~~pGd~Vlv~~P~y~~~~~---~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e 239 (249)
...+|+.|++....|..+.. .++..|++++.+|.+.++.+|+++++++++ +++++|++++++|+||..+ +.+
T Consensus 82 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~-~~t~lv~is~v~~~tG~~~-~~~ 159 (376)
T d1eg5a_ 82 AETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD-EDTFLVSIMAANNEVGTIQ-PVE 159 (376)
T ss_dssp HHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC-TTEEEEEEESBCTTTCBBC-CHH
T ss_pred cccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcC-CCceEEEEECCccccceee-eeh
Confidence 35788999999888875443 345579999999988889999999999998 7999999999999999995 555
Q ss_pred HHHHHhhhh
Q 025730 240 WIWGISSEH 248 (249)
Q Consensus 240 ~i~~i~~~~ 248 (249)
.+..+++.+
T Consensus 160 ~i~~~~~~~ 168 (376)
T d1eg5a_ 160 DVTRIVKKK 168 (376)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhc
Confidence 555555443
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.54 E-value=2e-14 Score=126.38 Aligned_cols=149 Identities=16% Similarity=0.152 Sum_probs=111.5
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-cc----C-CCCCCC-----cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LK----F-PYIYPD-----PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~----~-~~~Yp~-----~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
.+.|+.+... +.|..+.+++.+ +. . ...|.. .-..++|+.+|+++|+++++|++|+|+++++++++.+
T Consensus 8 ~~yld~~~~~-~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~ 86 (381)
T d1elua_ 8 KTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWG 86 (381)
T ss_dssp SEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHH
T ss_pred CEEeeCCccc-CCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchh
Confidence 4678766433 456677777654 21 1 112211 1145689999999999999999999999999999998
Q ss_pred h-cCCCCeEEEcCCCChh----HHHHHHHCCCEEEEecCCCCCCC--CHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 166 V-LDPGDKIVDCPPTFTM----YEFDAAVNGAAVVKVPRKSDFSL--NVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 166 ~-~~pGd~Vlv~~P~y~~----~~~~~~~~G~~v~~v~~~~~~~i--d~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
+ .++||+|++.++.|+. +...++..|+++..++.+..... +.+.++++++ +++++++++++|||||.++ +.
T Consensus 87 l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~-~~t~~v~i~~~~n~tG~~~-~~ 164 (381)
T d1elua_ 87 LDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG-PKTRLVILSHLLWNTGQVL-PL 164 (381)
T ss_dssp SCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC-TTEEEEEEESBCTTTCCBC-CH
T ss_pred hhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhc-ccccccccccccccccccc-hh
Confidence 7 6899999999999963 44556668999999995433222 3567777777 7899999999999999996 55
Q ss_pred HHHHHHhhhh
Q 025730 239 SWIWGISSEH 248 (249)
Q Consensus 239 e~i~~i~~~~ 248 (249)
+.+.++|++|
T Consensus 165 ~~I~~l~~~~ 174 (381)
T d1elua_ 165 AEIMAVCRRH 174 (381)
T ss_dssp HHHHHHHHHC
T ss_pred hHHHHHHhhc
Confidence 5677788775
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=6.5e-13 Score=118.29 Aligned_cols=152 Identities=17% Similarity=0.238 Sum_probs=121.1
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCCC-----------cChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPD-----------PESRRLRAALAKDSGLE-SDHILVGCGADELIDL 161 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp~-----------~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~ 161 (249)
++++.|+.+... +.|+.+.+++.+ +...+..|. ...++.|+.+++++|.. +++|+++.|+|+++..
T Consensus 21 ~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~ 99 (405)
T d1jf9a_ 21 LPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINL 99 (405)
T ss_dssp EECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHH
T ss_pred CCeEEEeCcccc-CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHH
Confidence 356899887665 577888888875 322111111 01457899999999964 5899999999999998
Q ss_pred HHHH----hcCCCCeEEEcCCCCh----hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 162 IMRC----VLDPGDKIVDCPPTFT----MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 162 ~~~~----~~~pGd~Vlv~~P~y~----~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
++.. ...+||+|++.+-.|+ ++...++..|+++..+|.+.++.+|++.++++++ ++|++|++++.+|.||.
T Consensus 100 ~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~-~~t~lv~~~~v~~~tG~ 178 (405)
T d1jf9a_ 100 VANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD-EKTRLLAITHVSNVLGT 178 (405)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCC-TTEEEEEEESBCTTTCC
T ss_pred HHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhcc-CCcEEEEEecCCCcccc
Confidence 8875 3588999999999997 4666677789999999988888999999999998 79999999999999999
Q ss_pred CCChHHHHHHHhhhhC
Q 025730 234 FSWTSSWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~i~~i~~~~~ 249 (249)
++ +.+.+..+|+++|
T Consensus 179 ~~-pi~~i~~~~~~~g 193 (405)
T d1jf9a_ 179 EN-PLAEMITLAHQHG 193 (405)
T ss_dssp BC-CHHHHHHHHHHTT
T ss_pred cC-chHHhhhHHHHcC
Confidence 95 5566677888875
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.43 E-value=4.9e-13 Score=117.66 Aligned_cols=142 Identities=11% Similarity=0.007 Sum_probs=110.6
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHhccCCCCCCCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHHHHHhcCCCCeE
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLIMRCVLDPGDKI 173 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~~~~~~~pGd~V 173 (249)
+.++++......++.++...+.+... ..|..+.+++++..++.++.+ .+++++++|+++++..++.++. +||.|
T Consensus 20 ~~i~~~~gl~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~-~~~~v 94 (366)
T d2aeua1 20 DALYDLSGLSGGFLIDEKDKALLNTY----IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-PKKVI 94 (366)
T ss_dssp GGCEECSSCCCCCCCCHHHHHHHTST----THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC-CSEEE
T ss_pred chHhhhccCCCCCCccHHHHHHHHHh----cCchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC-CCCEE
Confidence 45688988888888877776666431 113234678899888888754 5689999999999999998865 55655
Q ss_pred EE-c-CCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 174 VD-C-PPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 174 lv-~-~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++ + .|+|..|...++..|++++.+. |+++++++++ +++|+|++++|+||++....+.+.+.++|++||
T Consensus 95 i~~~~~~~~~~~~~~~~l~g~~~v~~~-------d~e~l~~~i~-~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~ 164 (366)
T d2aeua1 95 HYLPELPGHPSIERSCKIVNAKYFESD-------KVGEILNKID-KDTLVIITGSTMDLKVIELENFKKVINTAKNKE 164 (366)
T ss_dssp EECSSSSCCTHHHHHHHHTTCEEEEES-------CHHHHHTTCC-TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHT
T ss_pred EEecCCCcchhHHHHHHhcCCeEECCC-------CHHHHHHhcC-CCceEEEEEecCCCCcCCHHHHHHHHHHhccCc
Confidence 44 3 5899999999999999876442 7999999998 799999999999987654456677899999986
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.39 E-value=3e-12 Score=111.91 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=100.4
Q ss_pred cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCC
Q 025730 129 PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLN 206 (249)
Q Consensus 129 ~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id 206 (249)
+...+|++.+|+++|. ++++.++++|.|+.+++.++ +++||+|++++.+|......+...|++++.++.+ +.+.+|
T Consensus 31 ~~v~~~E~~la~~~g~--~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d 108 (376)
T d1mdoa_ 31 PKNQELEAAFCRLTGN--QYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVT 108 (376)
T ss_dssp HHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBC
T ss_pred HHHHHHHHHHHHHHCc--CeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhccccceeeecccccccCCC
Confidence 3478999999999995 57888888999999999998 8999999999999999999999999999999955 457899
Q ss_pred HHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 207 VELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 207 ~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++.|+++++ +++|+|+++ |..|.. .+.+.+..+|+++|
T Consensus 109 ~~~l~~~i~-~~tkaIi~~---h~~G~~-~~~~~i~~i~~~~~ 146 (376)
T d1mdoa_ 109 PEHIEAAIT-PQTKAIIPV---HYAGAP-ADLDAIYALGERYG 146 (376)
T ss_dssp HHHHHHHCC-TTEEEECCB---CGGGCC-CCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCCeEEEEe---CCCCCc-cchhHHHHHHHhcC
Confidence 999999998 789999965 468887 57788889999885
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.27 E-value=2.8e-11 Score=107.23 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=99.2
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHH----CCCEEEEecCCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV----NGAAVVKVPRKSD 202 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~----~G~~v~~v~~~~~ 202 (249)
.++....|++.|++..| .+..+++++++.++..++.+++++||+|++.+..|......++. .|.++..++.
T Consensus 57 ~nPT~~~LE~~la~LEg--~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~--- 131 (392)
T d1gc0a_ 57 SNPTLNLLEARMASLEG--GEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM--- 131 (392)
T ss_dssp CCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT---
T ss_pred CChHHHHHHHHHHHHhC--CcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCc---
Confidence 45667889999999998 56788899999999999999999999999999999866555544 6999999874
Q ss_pred CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 ~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
-|++.++++++ +++|+||+-+|.|||..+ .+.+.+.++|+++|
T Consensus 132 --~d~~~~~~ai~-~~t~lv~~Esp~NP~l~v-~Di~~i~~ia~~~g 174 (392)
T d1gc0a_ 132 --ADLQALEAAMT-PATRVIYFESPANPNMHM-ADIAGVAKIARKHG 174 (392)
T ss_dssp --TCHHHHHHHCC-TTEEEEEEESSCTTTCCC-CCHHHHHHHHGGGT
T ss_pred --cCHHHHHHhCC-CCCeEEEecccccceeee-cchHHHHHHHHhcC
Confidence 37899999998 799999999999999999 68888889999875
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.25 E-value=1.2e-10 Score=102.71 Aligned_cols=114 Identities=23% Similarity=0.313 Sum_probs=99.0
Q ss_pred cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCC-CCCCCC
Q 025730 129 PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLN 206 (249)
Q Consensus 129 ~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~-~~~~id 206 (249)
+...+|++.+|+++|. .+++.+++++.+|.++++++ +++||+|+++..+|......+...|++++.++.+ ..+.+|
T Consensus 34 ~~v~~fE~~~a~~~g~--~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d 111 (384)
T d1b9ha_ 34 DEVNSFEREFAAHHGA--AHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLD 111 (384)
T ss_dssp SHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBC
T ss_pred HHHHHHHHHHHHHHCc--CeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccccccccccccccccccccccccccccccc
Confidence 4478999999999994 57889999999999999987 7899999999999999999999999999999954 568899
Q ss_pred HHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 207 VELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 207 ~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++.+++.++ .++++|+ +.+..|.. .+.+.+..+|+++|
T Consensus 112 ~~~~~~~i~-~~tk~i~---~~~~~g~~-~d~~~i~~~~~~~~ 149 (384)
T d1b9ha_ 112 PEAVAAAVT-PRTKVIM---PVHMAGLM-ADMDALAKISADTG 149 (384)
T ss_dssp HHHHHHHCC-TTEEEEC---CBCGGGCC-CCHHHHHHHHHHHT
T ss_pred hhhhccccc-ccccccc---cccccccc-cccccchhhhhhhh
Confidence 999999998 7899987 56777777 56677888898875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.24 E-value=1.8e-11 Score=102.12 Aligned_cols=146 Identities=14% Similarity=0.195 Sum_probs=97.9
Q ss_pred CCCCCCCCCHHHHHHHHh--ccCCCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCC
Q 025730 102 ANENPYGPPPEVREALGQ--LKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178 (249)
Q Consensus 102 ~~~~~~~~p~~v~~al~~--~~~~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P 178 (249)
.|+|+++++|.+++|+.+ ......| +++..+++|+.+++++|.++++|++|+|+++++.+++..++.+++++++..+
T Consensus 5 ~nd~~~g~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~ 84 (340)
T d1svva_ 5 VNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQL 84 (340)
T ss_dssp SCSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETT
T ss_pred ccCCCCCCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccccccccc
Confidence 579999999999999986 2334567 4556788999999999999899999999999999999999999999999999
Q ss_pred CChhHHH--HHHHCCCEEEEecCCCCCCCCHHHHHHhhcc------CCceEEEEcCCCCccccCCChHHH--HHHHhhhh
Q 025730 179 TFTMYEF--DAAVNGAAVVKVPRKSDFSLNVELIADAVER------EKPKCIFLTSPNNPDGRFSWTSSW--IWGISSEH 248 (249)
Q Consensus 179 ~y~~~~~--~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~------~~~k~i~l~~PnNPTG~~~~~~e~--i~~i~~~~ 248 (249)
.+..+.. .....+.....+..... ..+.+...++... .+..++++++++|+.+.. ..+++ +..+|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 162 (340)
T d1svva_ 85 GHISTHETGAIEATGHKVVTAPCPDG-KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQY-TKQELEDISASCKEH 162 (340)
T ss_dssp SHHHHSSTTHHHHTTCCEEEECCTTS-CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCC-CHHHHHHHHHHHHHH
T ss_pred cceeeeecccccccceeeeecccccc-cccchhHHHHhhhhhcccCCcceeeeecccccccccc-cHHHhhhhhcccccc
Confidence 8865432 22224444444443222 3333433333221 123344444566554444 55433 45566654
Q ss_pred C
Q 025730 249 N 249 (249)
Q Consensus 249 ~ 249 (249)
+
T Consensus 163 g 163 (340)
T d1svva_ 163 G 163 (340)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.24 E-value=1.3e-10 Score=103.13 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=119.5
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccC--CC----CCCC-----cChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKF--PY----IYPD-----PESRRLRAALAKDSGLE-SDHILVGCGADELIDL 161 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~--~~----~Yp~-----~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~ 161 (249)
+++|.|+.+... +.|+.+++++.+ +.. .+ .|.. .-.++.|+.+++++|++ ++.|++++++++++++
T Consensus 21 ~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~ 99 (408)
T d1t3ia_ 21 HPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINL 99 (408)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHH
T ss_pred CCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHH
Confidence 457999888765 477888888765 221 11 1110 12356899999999996 5789999999999999
Q ss_pred HHHH----hcCCCCeEEEcCCCCh----hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCcccc
Q 025730 162 IMRC----VLDPGDKIVDCPPTFT----MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233 (249)
Q Consensus 162 ~~~~----~~~pGd~Vlv~~P~y~----~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~ 233 (249)
++.. -+++||+|++.+-.|+ ++...++..|.++..++.+.++..|.+.++++++ +++++|.+++.+|-||.
T Consensus 100 ~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~-~~t~lv~i~~~~~~tG~ 178 (408)
T d1t3ia_ 100 VAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS-EKTKLVTVVHISNTLGC 178 (408)
T ss_dssp HHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC-TTEEEEEEESBCTTTCB
T ss_pred HHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccC-CCceEEEEecccccccc
Confidence 8865 3678999999998987 3445566689999999987888899999999998 79999999999999999
Q ss_pred CCChHHHHHHHhhhhC
Q 025730 234 FSWTSSWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~e~i~~i~~~~~ 249 (249)
.+ +.+.+..+|+++|
T Consensus 179 ~~-p~~~i~~~~~~~g 193 (408)
T d1t3ia_ 179 VN-PAEEIAQLAHQAG 193 (408)
T ss_dssp BC-CHHHHHHHHHHTT
T ss_pred cC-cHHHHhhhhhccC
Confidence 95 5566778888875
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.22 E-value=1.2e-10 Score=103.26 Aligned_cols=132 Identities=19% Similarity=0.214 Sum_probs=104.4
Q ss_pred CCHHHHHHHHhccCCCCCC---CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH
Q 025730 109 PPPEVREALGQLKFPYIYP---DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185 (249)
Q Consensus 109 ~p~~v~~al~~~~~~~~Yp---~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~ 185 (249)
.+++..+.......++.|. ++....|.+.|+++.| .+..+++++++.++..++.+++++||+|++++..|.....
T Consensus 40 ~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg--g~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~ 117 (397)
T d1y4ia1 40 SAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLER--GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHA 117 (397)
T ss_dssp SHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHH
T ss_pred CHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhC--CccceeehHHHHHHHHHHhhccCCCCeeeeecccccccch
Confidence 3344444443333334553 4567889999999997 4567888999999999999999999999999999975443
Q ss_pred H----HHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 186 D----AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 186 ~----~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
. ....|.++..++. -|++.++++++ +++|+||+.+|.||+..+ .+.+.+.++++++|
T Consensus 118 ~~~~~l~~~Gi~~~~vd~-----~d~~~~~~~i~-~~Tklv~~Esp~NP~l~v-~Di~~i~~iA~~~g 178 (397)
T d1y4ia1 118 FLSHSMPKFGINVRFVDA-----GKPEEIRAAMR-PETKVVYIETPANPTLSL-VDIETVAGIAHQQG 178 (397)
T ss_dssp HHHTHHHHTTCEEEEECT-----TSHHHHHHHCC-TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHTT
T ss_pred hhhcccCCCceEeeccCC-----CCHHHHHHhcC-CCCcEEEecCCcccceee-cccHHHHHHhhcCC
Confidence 3 4458999999974 26899999998 799999999999999999 57777888898875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=1.2e-10 Score=98.40 Aligned_cols=149 Identities=17% Similarity=0.238 Sum_probs=107.9
Q ss_pred eeeccCCCCCCCCCHHHHHHHHhccCC-CCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEE
Q 025730 97 IVKIDANENPYGPPPEVREALGQLKFP-YIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIV 174 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~~~~~-~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vl 174 (249)
+|||.. ++-..|+|++++|+.+...+ ..| +++...+|++.+|+++|. +++++++|+++++.+++.++.++||.++
T Consensus 1 ~~~~~~-~~~t~p~p~v~~A~~~a~~g~~~yg~~p~~~~le~~lA~~~G~--~~~~~~~sGt~A~~~al~a~~~~g~~~~ 77 (343)
T d1m6sa_ 1 MIDLRS-DTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGK--EAALFVPSGTMGNQVSIMAHTQRGDEVI 77 (343)
T ss_dssp CEECSC-GGGCCCCHHHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHHCCTTCEEE
T ss_pred Cccccc-ccCCCCCHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHHCC--CeEEEeCCHHHHHHHHHHHHhccCCcee
Confidence 367743 22223467899999874332 346 677789999999999995 5788999999999999999999999999
Q ss_pred EcCCCChhHH---HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC-----CceE-EEEcCCCCccccCCChHH--HHHH
Q 025730 175 DCPPTFTMYE---FDAAVNGAAVVKVPRKSDFSLNVELIADAVERE-----KPKC-IFLTSPNNPDGRFSWTSS--WIWG 243 (249)
Q Consensus 175 v~~P~y~~~~---~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~-----~~k~-i~l~~PnNPTG~~~~~~e--~i~~ 243 (249)
+..+.+..+. ......+..+..++. ..+..|++.+++.++.. ++.. ++.+.++|+.|.+.+.++ .+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 156 (343)
T d1m6sa_ 78 LEADSHIFWYEVGAMAVLSGVMPHPVPG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICT 156 (343)
T ss_dssp EETTCHHHHSSTTHHHHHTCCEEEEECE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHH
T ss_pred ccccccceeeecccccccccceeecccc-ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHH
Confidence 9999886433 344456677777764 34567999999988631 2333 444567888888876653 4677
Q ss_pred HhhhhC
Q 025730 244 ISSEHN 249 (249)
Q Consensus 244 i~~~~~ 249 (249)
+|++|+
T Consensus 157 ~~~~~g 162 (343)
T d1m6sa_ 157 IAKEHG 162 (343)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 778875
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.1e-11 Score=106.82 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=115.4
Q ss_pred eeccCCCCCCCCCHHHHHHHHhccCCCCCCC--cChHHHHHHHHHHcCCCCC-CEEEeCCHHHHHHHHHHHhcCCCCeEE
Q 025730 98 VKIDANENPYGPPPEVREALGQLKFPYIYPD--PESRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDPGDKIV 174 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp~--~g~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~~~~~~~~pGd~Vl 174 (249)
+-|+-| |...++.|+++|......++-++ .-..+.|+.|++++|++.+ .|+++.|+|++++.++..++.+||+++
T Consensus 21 ~l~~pG--P~~~~~~Vl~am~~~~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~ 98 (388)
T d1h0ca_ 21 LLLGPG--PSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFL 98 (388)
T ss_dssp EECSSS--CCCCCHHHHHHHTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEE
T ss_pred ccccCC--CCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCcee
Confidence 334444 45567899999875333333222 1367899999999999655 688999999999999999999999999
Q ss_pred EcCCCCh--hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 175 DCPPTFT--MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 175 v~~P~y~--~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+....+. .+...+...+..++.+..+....+|.+.+++.+.+.+++++++++.+|.||.+ .+.+.+.++|++||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i-~pi~~i~~~~~~~g 174 (388)
T d1h0ca_ 99 VGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVL-QPLDGFGELCHRYK 174 (388)
T ss_dssp ECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEE-CCCTTHHHHHHTTT
T ss_pred eecccceeeeeccccccccccccccccCCccccchHHHHHHhccCCcceEEEeeeeeccccc-cCHHHHHHHhhccc
Confidence 9998876 34445555787777777777788999999988876789999999999999999 56677778898875
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.13 E-value=4.7e-10 Score=94.41 Aligned_cols=152 Identities=11% Similarity=0.091 Sum_probs=113.6
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhc--cCCCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCe
Q 025730 96 DIVKIDANENPYGPPPEVREALGQL--KFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK 172 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~--~~~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~ 172 (249)
+.++|. ++|.++..|+|++|+.+. .....| +++...++|+.+|+++|.+ ..+++|+|++++...++..++.+++.
T Consensus 3 ~~~~f~-s~n~~g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~v~f~~sGt~An~~a~~~~~~~~~~ 80 (345)
T d1v72a1 3 PALGFS-SDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERD-VEVFLVPTGTAANALCLSAMTPPWGN 80 (345)
T ss_dssp CCCBCS-CGGGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSC-CEEEEESCHHHHHHHHHHTSCCTTEE
T ss_pred CCcCcC-CCCCCCCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHHCCC-cEEEECCchHHHHHHHHHHHHhcCCc
Confidence 346776 478888999999999872 333455 5666889999999999964 46899999999999999999999988
Q ss_pred EEEcCCCChh---HHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC-----Cce-EEEEcCCCCccccCCChHH--HH
Q 025730 173 IVDCPPTFTM---YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE-----KPK-CIFLTSPNNPDGRFSWTSS--WI 241 (249)
Q Consensus 173 Vlv~~P~y~~---~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~-----~~k-~i~l~~PnNPTG~~~~~~e--~i 241 (249)
+++....+.. ........+..+..+....++..+++.+++.+... .+. .++.+.++|+.|.....++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (345)
T d1v72a1 81 IYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAI 160 (345)
T ss_dssp EEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHH
T ss_pred cccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhH
Confidence 8887776642 22334456788888877777889999999998632 122 3444567778887766654 46
Q ss_pred HHHhhhhC
Q 025730 242 WGISSEHN 249 (249)
Q Consensus 242 ~~i~~~~~ 249 (249)
..+|++||
T Consensus 161 ~~~~~~~~ 168 (345)
T d1v72a1 161 GDVCKSSS 168 (345)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 77898875
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.09 E-value=6.9e-10 Score=98.96 Aligned_cols=133 Identities=20% Similarity=0.195 Sum_probs=102.2
Q ss_pred CCHHHHHHHHhccCCCCC---CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH
Q 025730 109 PPPEVREALGQLKFPYIY---PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185 (249)
Q Consensus 109 ~p~~v~~al~~~~~~~~Y---p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~ 185 (249)
.+++..+.......++.| .++....|.+.|+++.+ .+..+++++++.++..++.+++++||+|++....|.....
T Consensus 35 ~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~--~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~ 112 (421)
T d2ctza1 35 SPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEG--GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFN 112 (421)
T ss_dssp CHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHH
T ss_pred CHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhH
Confidence 344444444332223345 45567889999999998 4568888999999999999999999999999999975444
Q ss_pred HH----HHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 186 DA----AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 186 ~~----~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+ ...|.++..++..+ +.+.+++.++ +++|+||+.+|.|||..+ .+.+.+.++|+++|
T Consensus 113 l~~~~~~~~gi~~~~~d~~~----~~~~~~~~~~-~~t~li~~EtpsNP~l~v-~Di~~i~~iA~~~g 174 (421)
T d2ctza1 113 QFKVTLKRLGIEVRFTSREE----RPEEFLALTD-EKTRAWWVESIGNPALNI-PDLEALAQAAREKG 174 (421)
T ss_dssp HHHTHHHHTTCEEEECCTTC----CHHHHHHHCC-TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT
T ss_pred HHHHHHhhccccceeccccc----CcchhccccC-CCceEEEEcCCCcceeEe-cchHHHHHHHHhcC
Confidence 43 45899998886421 3456666666 799999999999999999 68888899999886
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.09 E-value=5.8e-11 Score=104.43 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=106.7
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCCC-C---------cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIYP-D---------PESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Yp-~---------~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
+++|.|+.+.... .|..+.+++.+ +......+ . .-.+++|+.+|+++|+++++|++|.++++++..++
T Consensus 26 ~~~iYLd~as~g~-~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~ 104 (404)
T d1qz9a_ 26 EGVIYLDGNSLGA-RPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVL 104 (404)
T ss_dssp TTCEECCTTTSCC-CBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHH
T ss_pred CCCEEcCCccccc-CCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHh
Confidence 4578998875433 45566777655 32211111 0 11357999999999999999999999999998876
Q ss_pred HHh------cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 164 RCV------LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 164 ~~~------~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
... ..+|+.|++.+-.+..........+.++..++.+.+...+++.++++++ ++|++|.+++.+|.||.++ +
T Consensus 105 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~T~lV~i~~v~~~tG~~~-p 182 (404)
T d1qz9a_ 105 SAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAID-QDTAVVMLTHVNYKTGYMH-D 182 (404)
T ss_dssp HHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCS-TTEEEEEEESBCTTTCBBC-C
T ss_pred hhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceeccccccchhHHHhcC-CCceEEEEeccccccccee-c
Confidence 532 4678888888877764443333333444344433344567888999998 8999999999999999995 6
Q ss_pred HHHHHHHhhhhC
Q 025730 238 SSWIWGISSEHN 249 (249)
Q Consensus 238 ~e~i~~i~~~~~ 249 (249)
.+.+.++|+++|
T Consensus 183 v~~i~~~~~~~~ 194 (404)
T d1qz9a_ 183 MQALTALSHECG 194 (404)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHhccccccc
Confidence 777777888764
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.07 E-value=7.9e-10 Score=97.44 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=94.6
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHH----CCCEEEEecCCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV----NGAAVVKVPRKSD 202 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~----~G~~v~~v~~~~~ 202 (249)
.++....|.+.|+.+.+ .+..+++++++.++.. +..++++||+|++..+.|......++. .|.++..++.
T Consensus 47 ~nPt~~~le~~la~LE~--~~~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~--- 120 (380)
T d1ibja_ 47 GNPTRDALESLLAKLDK--ADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT--- 120 (380)
T ss_dssp CCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT---
T ss_pred CChHHHHHHHHHHHHcC--CceEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhccccccccccCc---
Confidence 45567889999999998 4567788888999975 557899999999999999866665554 6888888864
Q ss_pred CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 203 ~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|.+.++++++ +++|+||+.+|.||+..+ .+.+.+.++|+++|
T Consensus 121 --~~~~~~~~ai~-~~t~li~~EtpsNP~l~v-~Di~~i~~iA~~~g 163 (380)
T d1ibja_ 121 --TKLDEVAAAIG-PQTKLVWLESPTNPRQQI-SDIRKISEMAHAQG 163 (380)
T ss_dssp --TSHHHHHHHCC-SSEEEEEECSSCTTTCCC-CCHHHHHHHHHTTT
T ss_pred --chHHHHHHHhc-cCccEEEecccccccccc-ccHHHHHHHHHHcC
Confidence 36899999997 799999999999999999 67788889999886
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.04 E-value=2.1e-09 Score=95.12 Aligned_cols=133 Identities=15% Similarity=0.207 Sum_probs=101.6
Q ss_pred CCHHHHHHHHhccCCCCCC---CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHH
Q 025730 109 PPPEVREALGQLKFPYIYP---DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185 (249)
Q Consensus 109 ~p~~v~~al~~~~~~~~Yp---~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~ 185 (249)
..++..+....-..++.|. ++....|.+.|+++.| .+..+++++++.++..++.+++++||+|++....|.....
T Consensus 44 ~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEg--g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~ 121 (398)
T d1qgna_ 44 KTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEG--AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRI 121 (398)
T ss_dssp SHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHH
T ss_pred CHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhC--CceEEEecCcchHHHHHHhhcccccccccccccccchhhh
Confidence 3344444443333345563 4567789999999998 4678899999999999999999999999999999986555
Q ss_pred HHHH----CCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 186 DAAV----NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 186 ~~~~----~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.++. .|.++..++. .|.+..++.+.++++++||+.+|.|||..+ .+.+.+..+|+++|
T Consensus 122 l~~~~~~~~gi~~~~~~~-----~~~~~~~~~~~~~~t~~v~~EspsNP~l~v-~Di~~ia~ia~~~g 183 (398)
T d1qgna_ 122 FIETILPKMGITATVIDP-----ADVGALELALNQKKVNLFFTESPTNPFLRC-VDIELVSKLCHEKG 183 (398)
T ss_dssp HHHHTGGGGTCEEEEECS-----SCHHHHHHHHHHSCEEEEEEESSCTTTCCC-CCHHHHHHHHHHTT
T ss_pred hhcccccccccccccccc-----cchhhhhhhhccccceEEEccCcccccccc-chHHHHHHHHhhcC
Confidence 5443 7888888863 244555554434799999999999999999 67888899999986
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.7e-09 Score=95.34 Aligned_cols=115 Identities=23% Similarity=0.222 Sum_probs=96.0
Q ss_pred CCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHH----HCCCEEEEecCCC
Q 025730 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAA----VNGAAVVKVPRKS 201 (249)
Q Consensus 126 Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~----~~G~~v~~v~~~~ 201 (249)
+.++....|.+.|+++.| .+..+++++++.++..++.+++++||.|++.+..|......+. ..|.++..++.
T Consensus 47 ~~nPt~~~le~~la~LEg--g~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~-- 122 (384)
T d1cs1a_ 47 RGNPTRDVVQRALAELEG--GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ-- 122 (384)
T ss_dssp TCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT--
T ss_pred CCCHHHHHHHHHHHHHhC--CCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccC--
Confidence 345667889999999998 5678889999999999999999999999999999975433333 26778777754
Q ss_pred CCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 202 ~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.|.+.+++++. +++|+||+.+|.|||..+ .+.+.+.++++++|
T Consensus 123 ---~d~~~~~~~~~-~~t~~v~~EspsNP~l~v-~Di~~i~~ia~~~g 165 (384)
T d1cs1a_ 123 ---GDEQALRAALA-EKPKLVLVESPSNPLLRV-VDIAKICHLAREVG 165 (384)
T ss_dssp ---TCHHHHHHHHH-TCCSEEEEECSCTTTCCC-CCHHHHHHHHHHTT
T ss_pred ---CCHHHHHhhcc-ccccEEEEecccccccee-ccHHHHhhhhhhcC
Confidence 37899999998 899999999999999999 67788888999875
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.00 E-value=2.9e-09 Score=95.97 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=107.2
Q ss_pred eeeccCCCCCCCCCHHHHHHHHhccCCCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEE
Q 025730 97 IVKIDANENPYGPPPEVREALGQLKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVD 175 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~~~~~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv 175 (249)
+|||=+-.......+.+..++. .....| .++...+|++.+++++| .++++++++++.+..+++++++++||+|+.
T Consensus 44 ~iDl~sDs~t~am~~~~~aa~~--~GDd~Y~~dpt~~~lE~~~a~l~G--~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~ 119 (456)
T d1c7ga_ 44 YIDLLTDSGTNAMSDKQWAGMM--IGDEAYAGSENFYHLEKTVKELFG--FKHIVPTHQGRGAENLLSQLAIKPGQYVAG 119 (456)
T ss_dssp SEECSCSSSCCCEEHHHHHHTT--SCCCCSSSCHHHHHHHHHHHHHHC--CSEEEEESSHHHHHHHHHHHHCCTTEEEEE
T ss_pred eeEcccCCCcccchHHHHHHHh--ccchhccCCchHHHHHHHHHHHhC--CCeEEECCCHHHHHHHHHHHhcCCCCeEec
Confidence 5787553333333444433332 122467 45678899999999999 557899999999999999999999999987
Q ss_pred cCCCChhHHHHHHHCCCEEEEecC----------CCCCCCCHHHHHHhhcc---CCceEEEEcCCCCccc-cCCChH--H
Q 025730 176 CPPTFTMYEFDAAVNGAAVVKVPR----------KSDFSLNVELIADAVER---EKPKCIFLTSPNNPDG-RFSWTS--S 239 (249)
Q Consensus 176 ~~P~y~~~~~~~~~~G~~v~~v~~----------~~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPTG-~~~~~~--e 239 (249)
... |..+.......|+.++.+.. ...+.+|++++++++++ .++.++++.+|+|+.| .+++.+ +
T Consensus 120 ~~~-f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~ 198 (456)
T d1c7ga_ 120 NMY-FTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMR 198 (456)
T ss_dssp SSC-CHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred Ccc-hHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHH
Confidence 655 55455556678998887652 13467899999999963 2346888999999975 555555 4
Q ss_pred HHHHHhhhhC
Q 025730 240 WIWGISSEHN 249 (249)
Q Consensus 240 ~i~~i~~~~~ 249 (249)
.+.++|++||
T Consensus 199 ~i~~~a~~~~ 208 (456)
T d1c7ga_ 199 AVHEMASTYG 208 (456)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 5789999986
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=98.99 E-value=3.6e-09 Score=93.60 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHhccCCCCC---CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHH
Q 025730 108 GPPPEVREALGQLKFPYIY---PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184 (249)
Q Consensus 108 ~~p~~v~~al~~~~~~~~Y---p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~ 184 (249)
+..++..+.......++.| .++....|.+.|++..| .+..+++++++.++..++.+++++||.|++.+..|....
T Consensus 35 ~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg--~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~ 112 (394)
T d1e5ea_ 35 DNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEK--TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTH 112 (394)
T ss_dssp SSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHH
T ss_pred CCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhC--CcceeeeccchHHHHHHHHhhcccccccccccceeehhh
Confidence 3334444444433333455 34567789999999988 556788899999999999999999999999999996433
Q ss_pred ----HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 185 ----FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 185 ----~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
......|.++..++.. |+++++++++ +++|+||+..|.||+..+.+.+.+++.+++++
T Consensus 113 ~~~~~~~~~~gi~~~~~d~~-----d~~~~~~~i~-~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~ 174 (394)
T d1e5ea_ 113 ALFEHALTKFGIQVDFINTA-----IPGEVKKHMK-PNTKIVYFETPANPTLKIIDMERVCKDAHSQE 174 (394)
T ss_dssp HHHHTHHHHTTCEEEEECTT-----STTHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHTST
T ss_pred HhHHHHhhccceeeeccCCC-----CHHHHHHhhc-ccccEEEEeccCCcceeeehhhhhhhcccccc
Confidence 2345589999999753 5678999998 79999999999999999965565666655554
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=98.98 E-value=1.3e-09 Score=95.03 Aligned_cols=143 Identities=19% Similarity=0.242 Sum_probs=110.7
Q ss_pred CCCCCHHHHHHHHhccCCCCCCC--cChHHHHHHHHHHcCCCCCC-EEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh-
Q 025730 106 PYGPPPEVREALGQLKFPYIYPD--PESRRLRAALAKDSGLESDH-ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT- 181 (249)
Q Consensus 106 ~~~~p~~v~~al~~~~~~~~Yp~--~g~~~lr~~la~~~~~~~~~-I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~- 181 (249)
|...++.|+++|......++-++ .-..+.|+.|+++++++..+ |+++.|+|.+++.++..++.+|+++++..-.+.
T Consensus 25 P~~~~~~V~~Am~~~~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~ 104 (388)
T d2ch1a1 25 PSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWA 104 (388)
T ss_dssp SCCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHH
T ss_pred CCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcccccccccccccccc
Confidence 44467899999875322222222 13678999999999987665 556778999999999999999999998877764
Q ss_pred -hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 182 -MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 182 -~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+...++..+...+.+...+....+.+.+++...+.+++++++++-+|.||.. .+.+.+..+|+++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~-~~~~~i~~~~~~~~ 172 (388)
T d2ch1a1 105 ERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLL-QPLEGVGQICHQHD 172 (388)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEE-CCCTTHHHHHHHTT
T ss_pred ccchhhhhhhcccccccccccccccchhhhhhhhccCCcceeeeeecccccccc-cchhhhcchhcccc
Confidence 34455666888888888777777888888888776789999999999999999 57777777888765
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.96 E-value=7.4e-09 Score=90.18 Aligned_cols=112 Identities=20% Similarity=0.193 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCC-HH
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN-VE 208 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id-~e 208 (249)
..+|++.+++++|. .+.+.++++|.||.++++++ +++||+|+++.-+|......+...|++++.++.+++...+ .+
T Consensus 23 ~~~fE~~~~~~~~~--~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~~~ 100 (374)
T d1o69a_ 23 VNRFEQSVKDYSKS--ENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDL 100 (374)
T ss_dssp HHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHH
T ss_pred HHHHHHHHHHHHCc--CeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHhhccceeEeccccccccccccc
Confidence 68899999999995 47899999999999999988 8899999999999998888888999999999976554333 33
Q ss_pred HH--HHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 209 LI--ADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 209 ~l--~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.. ....+ .++++|++++ ..|.. .+.+.+..+|+++|
T Consensus 101 ~~~~~~~~~-~~~~aii~~~---~~G~~-~d~~~i~~~~~~~~ 138 (374)
T d1o69a_ 101 LKLAIKECE-KKPKALILTH---LYGNA-AKMDEIVEICKEND 138 (374)
T ss_dssp HHHHHHHCS-SCCCEEEEEC---GGGCC-CCHHHHHHHHHHTT
T ss_pred ccccchhcc-cccccccccc---cccch-hhhHHHHHHhhccC
Confidence 22 23444 6789999544 45666 57788888999875
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=98.95 E-value=3.7e-09 Score=91.49 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHH----HHHHHCCCEEEEecCCCCCCCCHH
Q 025730 133 RLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE----FDAAVNGAAVVKVPRKSDFSLNVE 208 (249)
Q Consensus 133 ~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~----~~~~~~G~~v~~v~~~~~~~id~e 208 (249)
.|.+.+|++.| .+..+++++++.++..++..++++||+|++....|.... ......|.++.+++.. |++
T Consensus 2 aLE~~la~Leg--~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~-----d~~ 74 (331)
T d1pffa_ 2 ALEGKIAKLEH--AEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA-----VPG 74 (331)
T ss_dssp HHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STT
T ss_pred HHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-----chh
Confidence 47889999988 567888899999999999999999999999999996433 3345589999998753 678
Q ss_pred HHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 209 LIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 209 ~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.++++++ +++++|++.+|.||+..+.+...+.+..++++|
T Consensus 75 ~~~~~i~-~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~ 114 (331)
T d1pffa_ 75 NIEKHLK-PNTRIVYFETPANPTLKVIDIEDAVKQARKQKD 114 (331)
T ss_dssp HHHHTCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSS
T ss_pred hHhhhcc-cccceeeeecccccccccccchhhhhhhhcccC
Confidence 8999998 799999999999999999665666666566654
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=3.7e-09 Score=92.09 Aligned_cols=142 Identities=15% Similarity=0.074 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHhccCCCCCCCc--ChHHHHHHHHHHcC----CCCCCEEEeCCHHHHHHHHHHHhc---CCCCeEEEc
Q 025730 106 PYGPPPEVREALGQLKFPYIYPDP--ESRRLRAALAKDSG----LESDHILVGCGADELIDLIMRCVL---DPGDKIVDC 176 (249)
Q Consensus 106 ~~~~p~~v~~al~~~~~~~~Yp~~--g~~~lr~~la~~~~----~~~~~I~vt~Ga~~~l~~~~~~~~---~pGd~Vlv~ 176 (249)
|.+.++.|+++|......++-++. -..++++.+++.++ .+.+.|++|.|+|+++++++..++ ++||+|++.
T Consensus 11 P~~v~~~V~~Am~~~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~ 90 (382)
T d2bkwa1 11 PIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV 90 (382)
T ss_dssp SCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred CCCCCHHHHHHhCcccCCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 445678888887642222222221 24566777777775 355679999999999999999986 689999998
Q ss_pred CCCCh--hHHHHHHHCCCEEEEec-CCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 177 PPTFT--MYEFDAAVNGAAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 177 ~P~y~--~~~~~~~~~G~~v~~v~-~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
.-.+. .+...++..|..+..+. .+.+...+.+.+++++.+.+++++++++.+|.||... +.+.+..+|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~-~~~~~~~~~~~~ 164 (382)
T d2bkwa1 91 STGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLS-DLKAISQAIKQT 164 (382)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEEC-CHHHHHHHHHHH
T ss_pred EechhhhhhhhhccccccccccccccCCCCccchhHHHHHhhhccchheeeeeccccccccc-cchhhhhhcccc
Confidence 87765 34556677888887776 3455668899999888767899999999999999995 555555566554
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=7.7e-09 Score=91.33 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=101.8
Q ss_pred CCCCHHHHHHHHhccC-CCCC---CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChh
Q 025730 107 YGPPPEVREALGQLKF-PYIY---PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTM 182 (249)
Q Consensus 107 ~~~p~~v~~al~~~~~-~~~Y---p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~ 182 (249)
|...++..++...... .+.| .++....|.+.++++.| .+..+++++++.++..++.+++++||+|++....|..
T Consensus 32 f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg--~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~ 109 (391)
T d1cl1a_ 32 FDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEG--GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEP 109 (391)
T ss_dssp CSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHH
T ss_pred eCCHHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhC--CccEEEeccccceeeehhhcccCCCCeEEEecccccc
Confidence 3334455555554222 2345 45567889999999998 5678899999999999999999999999999999986
Q ss_pred HHHHHH----HCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhh
Q 025730 183 YEFDAA----VNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEH 248 (249)
Q Consensus 183 ~~~~~~----~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~ 248 (249)
....++ ..|.++..++.. |.++++++++ +++++|++.+|.||+..+. +.+.+..+++++
T Consensus 110 T~~l~~~~l~~~Gi~~~~~d~~-----d~~~~~~~i~-~~t~~i~~EtpsNP~l~v~-Di~~i~~~a~~~ 172 (391)
T d1cl1a_ 110 SQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQ-PNTKIVFLESPGSITMEVH-DVPAIVAAVRSV 172 (391)
T ss_dssp HHHHHHHTGGGGTCEEEEECTT-----CGGGGGGTCC-TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHH
T ss_pred hhhhhhhcccccccccccccCc-----cccccccccc-cccceeeecccCccccccc-ccHHHHHHHHhc
Confidence 555444 378899888642 5688888888 7899999999999999995 555666677654
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.91 E-value=3.9e-09 Score=92.14 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=95.4
Q ss_pred ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCC--CeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCC
Q 025730 130 ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPG--DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN 206 (249)
Q Consensus 130 g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pG--d~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id 206 (249)
...+|++.+++++|. .+++.+++++.++.++++++ +.+| |+|+++.-+|......+...|++++.++.+.+..++
T Consensus 32 ~v~~fE~~~~~~~g~--k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~~~~ 109 (371)
T d2fnua1 32 RSLLFEEALCEFLGV--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKNDGNID 109 (371)
T ss_dssp HHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBC
T ss_pred HHHHHHHHHHHHHCc--CeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeeeccCccccccccccccccc
Confidence 478899999999995 47889999999999999987 3444 589999999998888888899999999987777788
Q ss_pred HHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 207 VELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 207 ~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+++++.++ .++++|+++ +..|.. .+.+.+..+|+++|
T Consensus 110 ~~~~~~~~~-~~t~avi~v---h~~G~~-~~~~~i~~~~~~~~ 147 (371)
T d2fnua1 110 ELALEKLIN-ERTKAIVSV---DYAGKS-VEVESVQKLCKKHS 147 (371)
T ss_dssp GGGSGGGCC-TTEEEEEEE---CGGGCC-CCHHHHHHHHHHHT
T ss_pred chhhhhhcc-chhhccccc---cccccc-cccccccccccccc
Confidence 888888887 799999965 466877 57777888898875
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.88 E-value=3.2e-09 Score=91.52 Aligned_cols=141 Identities=11% Similarity=0.023 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHhccCCCCC-C--CcChHHHHHHHHHHcCCCCCC--EEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCC
Q 025730 106 PYGPPPEVREALGQLKFPYIY-P--DPESRRLRAALAKDSGLESDH--ILVGCGADELIDLIMRCVLDPGDKIVDCPPTF 180 (249)
Q Consensus 106 ~~~~p~~v~~al~~~~~~~~Y-p--~~g~~~lr~~la~~~~~~~~~--I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y 180 (249)
|.+.++.|++++..-.. +.+ + ..-..+.|+.+++++|+++++ ++++.|+|+++++++..+..++|.+++....+
T Consensus 8 P~~~~~~V~~A~~~~~~-~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~ 86 (361)
T d1m32a_ 8 PLTTSRTVKEAMLFDSC-TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGA 86 (361)
T ss_dssp SCCCCHHHHHTTCCCCC-TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSH
T ss_pred CCCCCHHHHHHhhhhcc-CCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehh
Confidence 56677888888764211 222 1 234688999999999998775 77889999999999999999988888777665
Q ss_pred h--hHHHHHHHCCCEEEEecCCCCCCCC--HHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 181 T--MYEFDAAVNGAAVVKVPRKSDFSLN--VELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 181 ~--~~~~~~~~~G~~v~~v~~~~~~~id--~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
. .........+.....+........+ .+....... .+++++++++-+|-||... +.+.+..+|++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~tG~~~-~i~~i~~~~~~~g 157 (361)
T d1m32a_ 87 YGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD-PTISHIAMVHSETTTGMLN-PIDEVGALAHRYG 157 (361)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEEC-CHHHHHHHHHHHT
T ss_pred hhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhc-cCccceEEEeeecccccch-hhhhhhhhhcccc
Confidence 3 3334444556666655543333333 333344444 7899999999999999995 6666778898875
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=98.86 E-value=6.7e-09 Score=89.86 Aligned_cols=143 Identities=16% Similarity=0.168 Sum_probs=107.9
Q ss_pred CCCCCHHHHHHHHhccCCCCCCC--cChHHHHHHHHHHcCCCCC-CEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCCh-
Q 025730 106 PYGPPPEVREALGQLKFPYIYPD--PESRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFT- 181 (249)
Q Consensus 106 ~~~~p~~v~~al~~~~~~~~Yp~--~g~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~- 181 (249)
|...|+.|+++|......++-+. .-..+.|+.++++++++.+ .|+++.|++++++.++..++.+|+++++..-.+.
T Consensus 26 P~~v~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (377)
T d1vjoa_ 26 PSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFG 105 (377)
T ss_dssp CCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHH
T ss_pred CCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhh
Confidence 44567899999875333222122 2367899999999998654 6777888999999999999999999998887775
Q ss_pred -hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 182 -MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 182 -~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+.......+.....+....+...+.+..+....+.+++++.+++-+|.||.. .+.+.+.++|+++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~-~~i~~i~~~~~~~g 173 (377)
T d1vjoa_ 106 NRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGAR-QPLEGVGELCREFG 173 (377)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEE-CCCTTHHHHHHHHT
T ss_pred hhhhhhhhhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceee-echhhhhhhhhhcc
Confidence 34455556777777777655566677777776665789999999999999999 56777777788765
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.85 E-value=5.2e-09 Score=91.03 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=105.1
Q ss_pred CCCCCHHHHHHHHhccCCCCCCC--cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCC-h-
Q 025730 106 PYGPPPEVREALGQLKFPYIYPD--PESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF-T- 181 (249)
Q Consensus 106 ~~~~p~~v~~al~~~~~~~~Yp~--~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y-~- 181 (249)
|...++.|++++......++-++ .-..+.++.+++.++.+.+.++++.|++.+++.++..++.+||+|++..-++ .
T Consensus 8 P~~v~~~V~~am~~~~~~hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~ 87 (348)
T d1iuga_ 8 PVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSE 87 (348)
T ss_dssp SCCCCHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHH
T ss_pred CCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHH
Confidence 55678999999886322222121 1256788888999998777888999999999999999999999999887774 3
Q ss_pred hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 182 MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 182 ~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+...++.+|.++..+..+....++++.+ .+.+++.|++++..+.||.. .+.+.+..+|++++
T Consensus 88 ~~~~~a~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~v~~~h~eTstG~~-~~i~~i~~~~~~~~ 150 (348)
T d1iuga_ 88 RFYEIALEAGLVVERLDYPYGDTPRPEDV----AKEGYAGLLLVHSETSTGAL-ADLPALARAFKEKN 150 (348)
T ss_dssp HHHHHHHHTTCEEEEEECCTTCCCCTTTS----CCSSCSEEEEESEETTTTEE-CCHHHHHHHHHHHC
T ss_pred HHHHHHHhcCcccccccccCCCccccccc----cccCCCeeEEEecchhhhhh-ccHHHHHHHHHhhh
Confidence 56677778998888887655545554432 23788999999999999998 56677778887763
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=1.5e-08 Score=90.07 Aligned_cols=115 Identities=11% Similarity=0.008 Sum_probs=89.1
Q ss_pred HHHHHHHHcCCCC-CCEEEeCCHHHHHHHH-HHHh---cCCCCeEEEcCCCChhHHHHHHHCCCEEEEec---CCCCCCC
Q 025730 134 LRAALAKDSGLES-DHILVGCGADELIDLI-MRCV---LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP---RKSDFSL 205 (249)
Q Consensus 134 lr~~la~~~~~~~-~~I~vt~Ga~~~l~~~-~~~~---~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~---~~~~~~i 205 (249)
+.+.+++.+|.+. ...++++|++++..++ +.+. ..+++.|+++...|..+...+...|++++.|+ .++++.+
T Consensus 99 ~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~~~i 178 (445)
T d3bc8a1 99 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRT 178 (445)
T ss_dssp HHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEEC
T ss_pred HHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCccccc
Confidence 3445566678754 4566677777554443 3332 35679999999999999999999999998886 3566889
Q ss_pred CHHHHHHhhcc---CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 206 NVELIADAVER---EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 206 d~e~l~~~i~~---~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
|+++|++++++ .++.+|++++|+|++|.+ .+.+.+.++|++||
T Consensus 179 d~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~-~~~~~i~~~~~~~~ 224 (445)
T d3bc8a1 179 DLKAVEAKIQELGPEHILCLHSTTACFAPRVP-DRLEELAVICANYD 224 (445)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCC-CCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccccCeEEEEEeCCCCCCeee-hhHHHHHHHHHHhC
Confidence 99999999853 357889999999999998 68888999999986
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=6.8e-08 Score=85.18 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=85.7
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHH----CCCEEEEecCCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV----NGAAVVKVPRKSD 202 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~----~G~~v~~v~~~~~ 202 (249)
.++....|.+.|+++.| .+..+++++++.++..++ .++.+||.|++....|......+.. .|.++..++
T Consensus 53 gnPT~~~lE~~la~LE~--~~~a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~---- 125 (393)
T d1n8pa_ 53 QNPNRENLERAVAALEN--AQYGLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN---- 125 (393)
T ss_dssp CCHHHHHHHHHHHHHTT--CSEEEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES----
T ss_pred CChHHHHHHHHHHHHhC--CceEEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee----
Confidence 44567789999999987 456677777788987654 6788999999999999865555544 677776664
Q ss_pred CCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh
Q 025730 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 203 ~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
.+.++++++++ +++|+||+-+|.||+..+ .+.+.+.+++++
T Consensus 126 --~~~~~~~~~i~-~~t~lv~~EspsNP~l~v-~Di~~ia~~a~~ 166 (393)
T d1n8pa_ 126 --DLLNDLPQLIK-ENTKLVWIETPTNPTLKV-TDIQKVADLIKK 166 (393)
T ss_dssp --SHHHHHHHHSC-SSEEEEEECSSCTTTCCC-CCHHHHHHHHHH
T ss_pred --cchHHHHHHhh-hhcceeEecCcchhhhhc-cchhhhhhhhhh
Confidence 24678999888 799999999999999999 466666666663
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=98.63 E-value=1.4e-07 Score=84.28 Aligned_cols=150 Identities=11% Similarity=0.110 Sum_probs=103.5
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhccCCCCC-CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCe--
Q 025730 96 DIVKIDANENPYGPPPEVREALGQLKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK-- 172 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Y-p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~-- 172 (249)
..|||-.........+....++...+ ..| ++++..+|++.+++++| .++++++++++++...++..++++||+
T Consensus 43 ~~id~~sd~~t~~~~~~~~a~~~~gd--~~y~~~~~~~~le~~~a~l~g--~~~~~~~~sGt~A~~~a~~~~~~~g~~~~ 118 (465)
T d1ax4a_ 43 VYIDLLTDSGTNAMSDHQWAAMITGD--EAYAGSRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILFPVLLKYKQKEG 118 (465)
T ss_dssp CSEECSCSSSCCCEEHHHHHHHHTCC--CCSSSCHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeecccccchhhhhHHHHHHHhhhh--hhhccChHHHHHHHHHHHHHC--CCEEEECCCcHHHHHHHHHHHHHHHHhcC
Confidence 35777543332233444444443221 356 45678899999999999 468999999999999999998765543
Q ss_pred -----EEEcCCCChhHHHHHHHCCCEEEEecC----------CCCCCCCHHHHHHhhcc---CCceEEEEcCCCCcccc-
Q 025730 173 -----IVDCPPTFTMYEFDAAVNGAAVVKVPR----------KSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGR- 233 (249)
Q Consensus 173 -----Vlv~~P~y~~~~~~~~~~G~~v~~v~~----------~~~~~id~e~l~~~i~~---~~~k~i~l~~PnNPTG~- 233 (249)
++...+.|..+.......|..++.+.. ...+.+|++++++++++ ..+.++++..+||..|.
T Consensus 119 ~~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~ 198 (465)
T d1ax4a_ 119 KAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQ 198 (465)
T ss_dssp CCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSB
T ss_pred CCCCeEEeccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCcee
Confidence 456666667777777889999887642 23577899999999863 23456666666776654
Q ss_pred CCChH--HHHHHHhhhhC
Q 025730 234 FSWTS--SWIWGISSEHN 249 (249)
Q Consensus 234 ~~~~~--e~i~~i~~~~~ 249 (249)
+++.+ +.+.++|++||
T Consensus 199 ~~~~~~l~~i~~~~~~~g 216 (465)
T d1ax4a_ 199 PVSMSNLKEVYEIAKQHG 216 (465)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 44444 45788999986
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.59 E-value=1.8e-07 Score=82.70 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=89.6
Q ss_pred HHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh--cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecC---CCCCCCCHHHH
Q 025730 136 AALAKDSGLESDHILVGCGADELIDLIMRCV--LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR---KSDFSLNVELI 210 (249)
Q Consensus 136 ~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~--~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~---~~~~~id~e~l 210 (249)
..+++.+|.+....++..|++.++.+++.+. ..++++|+++.-.|..+...+...|++++.|+. ++.+.+|+++|
T Consensus 120 ~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l 199 (434)
T d2z67a1 120 ESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDI 199 (434)
T ss_dssp HHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHH
T ss_pred HHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHH
Confidence 3455566776666666777777777666654 237899999999999888888899999998873 45578999999
Q ss_pred HHhhcc----CCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 211 ADAVER----EKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 211 ~~~i~~----~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
++++++ .++.+|++++|++++|.+ .+.+.+.++|++||
T Consensus 200 ~~~i~~~~~~~~~~~v~~~~~~~~~g~~-~~l~~i~~~~~~~~ 241 (434)
T d2z67a1 200 ENAIKKEIELGNRPCVLSTLTFFPPRNS-DDIVEIAKICENYD 241 (434)
T ss_dssp HHHHHHHHHTTCCEEEEEESSCCTTBCC-CCHHHHHHHHHHHT
T ss_pred HHHHHhhhhcCCceEEEeccCcCCCccc-cCHHHHHHHHHHhC
Confidence 999963 367788888999999998 67788999999986
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=8.9e-07 Score=79.18 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=105.2
Q ss_pred eeccCCCCCCCCCHHHHHHHHh-ccC----CCCCCCcC--hHHHHHHHHHHcCCCCC-----CEEEeCCHHHHHHHHHHH
Q 025730 98 VKIDANENPYGPPPEVREALGQ-LKF----PYIYPDPE--SRRLRAALAKDSGLESD-----HILVGCGADELIDLIMRC 165 (249)
Q Consensus 98 I~L~~~~~~~~~p~~v~~al~~-~~~----~~~Yp~~g--~~~lr~~la~~~~~~~~-----~I~vt~Ga~~~l~~~~~~ 165 (249)
++|....+.+ .++++.+.+.. +.. ...||... ..+..+.+++++|.+.. .=.+|.|+++++.+.+.+
T Consensus 56 ~n~asf~~t~-~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~a 134 (450)
T d1pmma_ 56 QNLATFCQTW-DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMA 134 (450)
T ss_dssp GBCSCCSCCC-CCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHH
T ss_pred ccccccccCC-CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHH
Confidence 4566655554 44666666665 321 12344321 24567788888887432 247899999999988765
Q ss_pred hc-----------CC-CCeEEEcCCCChhHHHHHHHCCCEEEEecCCC-CCCCCHHHHHHhhccCCceEEEEcCCCCccc
Q 025730 166 VL-----------DP-GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232 (249)
Q Consensus 166 ~~-----------~p-Gd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~-~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG 232 (249)
.- .+ ...+++....|..+...++..|+++..|+.++ ++.+|+++++++++ +++.+|+.+.++|.||
T Consensus 135 ar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~-~~t~~Vv~t~gtt~tG 213 (450)
T d1pmma_ 135 MKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACD-ENTIGVVPTFGVTYTG 213 (450)
T ss_dssp HHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCC-TTEEEEECBBSCTTTC
T ss_pred HHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhh-hCceEEEeeeeeccCC
Confidence 31 12 24577888889999999999999999999654 58999999999998 7899999999999999
Q ss_pred cCCChHHHHHHHhh
Q 025730 233 RFSWTSSWIWGISS 246 (249)
Q Consensus 233 ~~~~~~e~i~~i~~ 246 (249)
.+ .+.+.+..+++
T Consensus 214 ~~-dpv~~i~~i~~ 226 (450)
T d1pmma_ 214 NY-EFPQPLHDALD 226 (450)
T ss_dssp BB-CCHHHHHHHHH
T ss_pred Cc-cccchhhHHHH
Confidence 99 66665555543
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=8.4e-07 Score=77.64 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=110.8
Q ss_pred CCCeeeccCCCC-CCCCCHHHHHHHHh-cc-CCCC-------CCC-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHH
Q 025730 94 PEDIVKIDANEN-PYGPPPEVREALGQ-LK-FPYI-------YPD-PESRRLRAALAKDSGLESDHILVGCGADELIDLI 162 (249)
Q Consensus 94 ~~~~I~L~~~~~-~~~~p~~v~~al~~-~~-~~~~-------Yp~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~ 162 (249)
+.++++|+.++- -+...|.++++..+ +. ++.+ +.. .-..+|++.||+++| .+..++.+++..+...+
T Consensus 37 g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g--~e~al~~~SG~~an~~~ 114 (383)
T d1bs0a_ 37 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG--YSRALLFISGFAANQAV 114 (383)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHH
T ss_pred CeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcC--CCceEEecccchhhHHH
Confidence 346788877642 22345677666543 21 1111 111 225789999999999 56788888999999999
Q ss_pred HHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhcc--CCceEEEEcCCCCccccCCChHHH
Q 025730 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER--EKPKCIFLTSPNNPDGRFSWTSSW 240 (249)
Q Consensus 163 ~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~--~~~k~i~l~~PnNPTG~~~~~~e~ 240 (249)
+.++..++|.|++..-.|..+...++..+.+++.++. .|.+++++.+.+ .+.++|+++.+.+.+|.+. +.+.
T Consensus 115 i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-----nd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~-pl~~ 188 (383)
T d1bs0a_ 115 IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSA-PLAE 188 (383)
T ss_dssp HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBC-CHHH
T ss_pred HHhhcCCCceEEeeccccHHHhhccccCCCcceEecc-----hHHHHHHHHhcccCCCceEEEecCCCCCCCccc-chhH
Confidence 9999999999999999998888888889999988874 367888877753 3457888889999999994 6666
Q ss_pred HHHHhhhhC
Q 025730 241 IWGISSEHN 249 (249)
Q Consensus 241 i~~i~~~~~ 249 (249)
+.+||++||
T Consensus 189 l~~l~~~~~ 197 (383)
T d1bs0a_ 189 IQQVTQQHN 197 (383)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 777899886
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=8.8e-07 Score=79.07 Aligned_cols=150 Identities=11% Similarity=0.110 Sum_probs=105.0
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHhccCCCCCC-CcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCe--
Q 025730 96 DIVKIDANENPYGPPPEVREALGQLKFPYIYP-DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK-- 172 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~~~~~~~Yp-~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~-- 172 (249)
.+|||-...........+..++.. ....|. ++...+|++.+++++|. +.++++++++++...++.+++++||.
T Consensus 42 ~~idl~sd~~t~~~~~~~~a~~~~--gd~~Y~~~~~~~~le~~~a~l~G~--~~~~~~~sGt~A~~~a~~~~~~~g~~~~ 117 (467)
T d2v1pa1 42 VFIDLLTDSGTGAVTQSMQAAMMR--GDEAFSGSRSYYALAESVKNIFGY--QYTIPTHQGRGAEQIYIPVLIKKREQEK 117 (467)
T ss_dssp CSEECSCCTTCSCCCHHHHHHTTS--CCCCSSSCHHHHHHHHHHHHHTCC--SEEEEECSSTTTHHHHHHHHHHHHHHHH
T ss_pred eeeeccccccchhhHHHHHhhccc--cchhhcCCchHHHHHHHHHHHHCC--CEEEECCCCHHHHHHHHHHHhhccceEe
Confidence 357775543333334444333322 124574 56688999999999994 57888999999999999988776654
Q ss_pred -------EEEcCCCChhHHHHHHHCCCEEEEecCCC----------CCCCCHHHHHHhhcc---CCceEEEEcCCCCccc
Q 025730 173 -------IVDCPPTFTMYEFDAAVNGAAVVKVPRKS----------DFSLNVELIADAVER---EKPKCIFLTSPNNPDG 232 (249)
Q Consensus 173 -------Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~----------~~~id~e~l~~~i~~---~~~k~i~l~~PnNPTG 232 (249)
+......|......+...|+++..++.+. ...+|++++++.+++ ..++++++.+.+|..|
T Consensus 118 ~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~g 197 (467)
T d2v1pa1 118 GLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAG 197 (467)
T ss_dssp CCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGG
T ss_pred cCCCCcEEEEecccccccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccc
Confidence 44555566667777788999999887432 356899999998863 3467888888887665
Q ss_pred -cCCChH--HHHHHHhhhhC
Q 025730 233 -RFSWTS--SWIWGISSEHN 249 (249)
Q Consensus 233 -~~~~~~--e~i~~i~~~~~ 249 (249)
.+++.+ +.+.+||++||
T Consensus 198 g~~~~~~~l~~i~~ia~~~g 217 (467)
T d2v1pa1 198 GQPVSLANLKAMYSIAKKYD 217 (467)
T ss_dssp CBCCCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHcC
Confidence 554444 55789999986
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=98.32 E-value=3.5e-07 Score=81.52 Aligned_cols=120 Identities=12% Similarity=0.071 Sum_probs=80.0
Q ss_pred CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHhcCCCCeEEEcCCCChhHHHHHHH-CCCEEEEec--CCCCC
Q 025730 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV-NGAAVVKVP--RKSDF 203 (249)
Q Consensus 127 p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~~~-~G~~v~~v~--~~~~~ 203 (249)
|+.-..++++.+|+++|.+ +.+++++|++.++..++.++++|||+|++..-+|......+.. .+..++.+. .+..+
T Consensus 64 ~~~~i~eae~~~A~~~ga~-~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g 142 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYG 142 (462)
T ss_dssp TBTHHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTC
T ss_pred CCHHHHHHHHHHHHHhCCC-eEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeeccccccc
Confidence 4334789999999999963 3455667778888888889999999999999999865554433 455555443 32221
Q ss_pred --------CCCHHHHHH---------hhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 204 --------SLNVELIAD---------AVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 204 --------~id~e~l~~---------~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.++.+.+++ +.. .+++.+++.+.+|-+|.+ .+.+.+.++|+++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~~~~~G~~-~dl~~I~~ia~~~g 203 (462)
T d1c4ka2 143 FIGGIYDSDFDEKKIRELAAKVDPERAKW-KRPFRLAVIQLGTYDGTI-YNAHEVVKRIGHLC 203 (462)
T ss_dssp CEEEECGGGSCHHHHHHHTTTSSHHHHTC-SCCBSEEEEESBCTTSEE-ECHHHHHHHHGGGB
T ss_pred ccCCCChHHhhHHHHHhhhhhhcHHhhhc-cCCceeEEEEeeeeccch-hhHHHHHHHHHHcC
Confidence 234444333 233 345555555555668998 56777888898875
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=4.8e-06 Score=73.11 Aligned_cols=149 Identities=10% Similarity=0.081 Sum_probs=106.8
Q ss_pred CCCCeeeccCCCC-CCCCCHHHHHHHHh-cc-CCCCC--C-----C-cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 93 KPEDIVKIDANEN-PYGPPPEVREALGQ-LK-FPYIY--P-----D-PESRRLRAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 93 ~~~~~I~L~~~~~-~~~~p~~v~~al~~-~~-~~~~Y--p-----~-~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
++..+|+|..++- -+...|.++++..+ +. ++..+ + . ....+|.+.+|+++| .+.++++++++++...
T Consensus 43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g--~e~al~~~SG~~An~~ 120 (401)
T d1fc4a_ 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG--MEDAILYSSCFDANGG 120 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHT
T ss_pred CCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhc--CCceEEecchhhhhHH
Confidence 3456789877642 23446788877664 32 22222 1 1 125689999999999 5678999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhh---cc--CCceEEEEcCCCCccccCCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAV---ER--EKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i---~~--~~~k~i~l~~PnNPTG~~~~ 236 (249)
++.++++++|.|++..-.|..+...+...++++..++. .|.+++++.+ +. ....+|++.+..+..|.+ .
T Consensus 121 ~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~-----~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~-~ 194 (401)
T d1fc4a_ 121 LFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVI-A 194 (401)
T ss_dssp THHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEE-C
T ss_pred HHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcC-----CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCch-h
Confidence 99999999999999999998888888889999888764 2455555544 22 233455555666667877 5
Q ss_pred hHHHHHHHhhhhC
Q 025730 237 TSSWIWGISSEHN 249 (249)
Q Consensus 237 ~~e~i~~i~~~~~ 249 (249)
+.+.+.+||++||
T Consensus 195 ~L~~l~~L~~~~~ 207 (401)
T d1fc4a_ 195 NLKGVCDLADKYD 207 (401)
T ss_dssp CHHHHHHHHHHTT
T ss_pred hhhHHHHHHhhcC
Confidence 6777888999986
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.05 E-value=1.1e-05 Score=72.41 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCCC---------CCEEEeCCHHHHHHHHHHHhc----------CCC---------CeEEEcCCCChhHH
Q 025730 133 RLRAALAKDSGLES---------DHILVGCGADELIDLIMRCVL----------DPG---------DKIVDCPPTFTMYE 184 (249)
Q Consensus 133 ~lr~~la~~~~~~~---------~~I~vt~Ga~~~l~~~~~~~~----------~pG---------d~Vlv~~P~y~~~~ 184 (249)
++.+.+++++|.+. ..-++|+|++++...++.+.- .+| -.|++++-+|..+.
T Consensus 117 ~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ 196 (476)
T d1js3a_ 117 VMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE 196 (476)
T ss_dssp HHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH
T ss_pred HHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHH
Confidence 34555666667643 245789999999888775421 111 14778888999999
Q ss_pred HHHHHCCCEEEEecCCCCCCCCHHHHHHhhccC-----CceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 185 FDAAVNGAAVVKVPRKSDFSLNVELIADAVERE-----KPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 185 ~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~-----~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
..+...|..+..|+.++++.+|+++|++++++. .+-+|+.+..++.||.+ ++.+.+.+||++||
T Consensus 197 ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~i-Dpl~~I~~i~~~~~ 265 (476)
T d1js3a_ 197 RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSF-DNLLEVGPICHEED 265 (476)
T ss_dssp HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB-CCHHHHHHHHHHTT
T ss_pred HHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceee-ccHHHHHHHHHhcC
Confidence 999999999999999999999999999999631 23456666789999999 89999999999986
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=97.90 E-value=1.8e-06 Score=74.08 Aligned_cols=138 Identities=12% Similarity=0.020 Sum_probs=92.3
Q ss_pred CCCCCHHHHHHHHh-ccC-----------CCCCCC--cChHHHHHHHHHHcCCCCC-CEEEeCCHHHHH-HHHHHHhcCC
Q 025730 106 PYGPPPEVREALGQ-LKF-----------PYIYPD--PESRRLRAALAKDSGLESD-HILVGCGADELI-DLIMRCVLDP 169 (249)
Q Consensus 106 ~~~~p~~v~~al~~-~~~-----------~~~Yp~--~g~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l-~~~~~~~~~p 169 (249)
|...|+.|+++|.. +.. .+|-+. .-..+.|+.|+++++.+.+ .|++++|++.+. ..+...+..+
T Consensus 11 P~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~ 90 (361)
T d2c0ra1 11 PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKE 90 (361)
T ss_dssp SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCT
T ss_pred CcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccC
Confidence 55578999999976 321 122111 1246789999999998644 678877776555 5555667888
Q ss_pred CCeEEEcCCCC-h-hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhh
Q 025730 170 GDKIVDCPPTF-T-MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSE 247 (249)
Q Consensus 170 Gd~Vlv~~P~y-~-~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~ 247 (249)
|+++++..-.. . .+...++..|.++..+..+....++++.+++.+.. .+.+. .+|.||... +...+..+|++
T Consensus 91 ~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---v~~~tg~~~-~~~~i~~~~~~ 164 (361)
T d2c0ra1 91 GQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQ--DNAAY---LHLTSNETI-EGAQFKAFPDT 164 (361)
T ss_dssp TCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCC--TTEEE---EEEESEETT-TTEECSSCCCC
T ss_pred CCceEEEeechhhhhhhhhhhhcCceeeeeccccccccchhhhhhhccc--CcceE---EEEecccce-ecceEEEeecc
Confidence 89888665443 2 56777888999999988766667788888887753 23333 457788874 44444556666
Q ss_pred hC
Q 025730 248 HN 249 (249)
Q Consensus 248 ~~ 249 (249)
+|
T Consensus 165 ~~ 166 (361)
T d2c0ra1 165 GS 166 (361)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=4.5e-06 Score=70.63 Aligned_cols=131 Identities=11% Similarity=-0.077 Sum_probs=88.6
Q ss_pred CCCCCCHHHHHHHHh-ccC-----------CCCCCCc--ChHHHHHHHHHHcCCCCC-CEEEeCCHHHHHHHHHH-HhcC
Q 025730 105 NPYGPPPEVREALGQ-LKF-----------PYIYPDP--ESRRLRAALAKDSGLESD-HILVGCGADELIDLIMR-CVLD 168 (249)
Q Consensus 105 ~~~~~p~~v~~al~~-~~~-----------~~~Yp~~--g~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~~~~-~~~~ 168 (249)
-|...|++|++++.+ +.. .+|-++. -..+.|+.|+++++.+.+ .|++++|++++...++. .+..
T Consensus 8 GP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~ 87 (360)
T d1bjna_ 8 GPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILG 87 (360)
T ss_dssp SSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCT
T ss_pred CCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccc
Confidence 345578999999986 321 1111111 156789999999998654 68888888777766655 4566
Q ss_pred CCCeEEEcCCCCh--hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 169 PGDKIVDCPPTFT--MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 169 pGd~Vlv~~P~y~--~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
++|.+++..-.+. .+...++..|..++.+....+...+.+.+++.+. .+++++++++.+|-||...+
T Consensus 88 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~~~~t~~~~~ 156 (360)
T d1bjna_ 88 DKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQ-LSDNAAYMHYCPNETIDGIA 156 (360)
T ss_dssp TCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCC-CCSSCSCEEECSEETTTTEE
T ss_pred cccccceecccchhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhc-cCCceeEEEecccccccCcc
Confidence 7788888766664 3555556677777666644444455556666665 67888888888999988753
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=97.78 E-value=0.00034 Score=60.94 Aligned_cols=147 Identities=22% Similarity=0.167 Sum_probs=102.0
Q ss_pred CCeeeccCCCC-CCCCCHHHHHHHHh-cc-CCCC------C-CCc-ChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 95 EDIVKIDANEN-PYGPPPEVREALGQ-LK-FPYI------Y-PDP-ESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 95 ~~~I~L~~~~~-~~~~p~~v~~al~~-~~-~~~~------Y-p~~-g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.++++|+.|+- -+...+.++++..+ ++ ++.+ + ... -..+|++.||+|+|. +..++.+.+..+...++
T Consensus 45 ~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~--e~all~~sG~~An~~~i 122 (396)
T d2bwna1 45 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK--EAALVFSSAYNANDATL 122 (396)
T ss_dssp EEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHH
T ss_pred eEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCC--CceeeeecchHHHHHHH
Confidence 46788887753 23445677766543 21 1111 1 122 246899999999994 56777777788887777
Q ss_pred HHh--cCCCCeEEEcCCCChhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhc---cCCceEEEEcCCCCccccCCChH
Q 025730 164 RCV--LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVE---REKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 164 ~~~--~~pGd~Vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~---~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
.++ ..+||.|+...-.|......++..++++..++.+ |.+++++.++ ..+.++|++...-.-+|.+ .+.
T Consensus 123 ~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~-apl 196 (396)
T d2bwna1 123 STLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDF-GPI 196 (396)
T ss_dssp HHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCB-CCH
T ss_pred HHHhcccCCCceeehhhhhhccchhhhccccCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeeccCcccc-ccc
Confidence 776 5688999888888888888888999999888743 4555555443 2345677777788889998 466
Q ss_pred HHHHHHhhhhC
Q 025730 239 SWIWGISSEHN 249 (249)
Q Consensus 239 e~i~~i~~~~~ 249 (249)
..+..|+++||
T Consensus 197 ~~l~~L~~~y~ 207 (396)
T d2bwna1 197 KEICDIAEEFG 207 (396)
T ss_dssp HHHHHHHHHHT
T ss_pred HhHHHHhhhhc
Confidence 66677898875
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.00015 Score=63.44 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=97.4
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-c--cCCCCCCC----cC---hHHH----HHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-L--KFPYIYPD----PE---SRRL----RAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~--~~~~~Yp~----~g---~~~l----r~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
+-|.|-..||.. ++.+++++.. + .+..+||. .| .+++ .+...++|+..-.+|-. .+++.+...
T Consensus 27 ~~i~LiaSEN~~--S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp-~SGs~AN~a 103 (416)
T d1dfoa_ 27 EHIELIASENYT--SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQP-HSGSQANFA 103 (416)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHH
T ss_pred cCceEecCcccC--CHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeec-ccCccHHHH
Confidence 348998888864 5899999876 3 22233443 12 1222 23334567765444444 556778888
Q ss_pred HHHHhcCCCCeEEEcCCCChhHHH-----HHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYEF-----DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~~-----~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~ 236 (249)
++.++++|||+|+..+..+..+.. .+.....+.+.++.+.++.+|.|++++.+.+.++|+|++..-.+| .. .
T Consensus 104 v~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~y~--r~-~ 180 (416)
T d1dfoa_ 104 VYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYS--GV-V 180 (416)
T ss_dssp HHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEECSSCC--SC-C
T ss_pred HHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEecccccc--cc-c
Confidence 999999999999999888763221 111233566777766677899999999988889999997643333 22 2
Q ss_pred hHHHHHHHhhhhC
Q 025730 237 TSSWIWGISSEHN 249 (249)
Q Consensus 237 ~~e~i~~i~~~~~ 249 (249)
+-+.+.+||++.|
T Consensus 181 d~~~~reiad~vg 193 (416)
T d1dfoa_ 181 DWAKMREIADSIG 193 (416)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcC
Confidence 3466778887754
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.44 E-value=0.00027 Score=61.49 Aligned_cols=148 Identities=17% Similarity=0.138 Sum_probs=96.3
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-c--cCCCCCCC----cC---hHHH----HHHHHHHcCCCCCCEEEeCCHHHHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-L--KFPYIYPD----PE---SRRL----RAALAKDSGLESDHILVGCGADELIDL 161 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~--~~~~~Yp~----~g---~~~l----r~~la~~~~~~~~~I~vt~Ga~~~l~~ 161 (249)
+-|.|-..||.. ++.+++++.. + .+..+||. .| .+++ .+...+.|+.+--+|-. .+++.+...
T Consensus 24 ~~l~LiaSEN~~--S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp-~SGs~An~a 100 (405)
T d1kl1a_ 24 AKIELIASENFV--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQP-HSGAQANMA 100 (405)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCC-SSHHHHHHH
T ss_pred cCceEeccCCcC--CHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeec-cCchHHHHH
Confidence 448998888864 5889999876 3 12233443 12 2222 23444567764444444 445667888
Q ss_pred HHHHhcCCCCeEEEcCCCChhHH-----HHHHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCCCCccccCC
Q 025730 162 IMRCVLDPGDKIVDCPPTFTMYE-----FDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFS 235 (249)
Q Consensus 162 ~~~~~~~pGd~Vlv~~P~y~~~~-----~~~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~ 235 (249)
++.++++|||+|+..++....+. ........+.+.++.+ +++.+|.|++++.++..++|+|++..-.+|-=.
T Consensus 101 v~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~r~~-- 178 (405)
T d1kl1a_ 101 VYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII-- 178 (405)
T ss_dssp HHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCC--
T ss_pred HHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEeccccccccc--
Confidence 89999999999999887765322 1112234677777754 557899999999998889999997644444221
Q ss_pred ChHHHHHHHhhhhC
Q 025730 236 WTSSWIWGISSEHN 249 (249)
Q Consensus 236 ~~~e~i~~i~~~~~ 249 (249)
+-+.+.+||++.|
T Consensus 179 -d~~~~reIad~vg 191 (405)
T d1kl1a_ 179 -DFAKFREIADEVG 191 (405)
T ss_dssp -CHHHHHHHHHHHT
T ss_pred -ChHHHHHHHhhhC
Confidence 3466777777653
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=97.30 E-value=3.4e-05 Score=65.41 Aligned_cols=145 Identities=11% Similarity=-0.001 Sum_probs=87.9
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-ccC-----------CCCCCCc--ChHHHHHHHHHHcCCCCC-CEEEeCCHHHHHHH
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LKF-----------PYIYPDP--ESRRLRAALAKDSGLESD-HILVGCGADELIDL 161 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~~-----------~~~Yp~~--g~~~lr~~la~~~~~~~~-~I~vt~Ga~~~l~~ 161 (249)
+.+|+.| |...|++|++++.+ +.. .+|-++. -..+.|+.|+++++.+.+ .|++++|++++...
T Consensus 4 ~~nF~pG--P~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~ 81 (360)
T d1w23a_ 4 VFNFNAG--PSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFT 81 (360)
T ss_dssp CEECCSS--SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred eeEeCCC--CcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHH
Confidence 3445543 44567999999986 321 0111111 246789999999999766 58889998888776
Q ss_pred HHHH-hcCCCCeEEEcCCCCh--hHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCChH
Q 025730 162 IMRC-VLDPGDKIVDCPPTFT--MYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238 (249)
Q Consensus 162 ~~~~-~~~pGd~Vlv~~P~y~--~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~ 238 (249)
+... +..+++++++....+. .+...++..+...+.+........+++.++.... ....+ +-+|-||.+ .+.
T Consensus 82 ~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~tg~~-~~~ 155 (360)
T d1w23a_ 82 MLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQL--NENDA---YLHITSNNT-IYG 155 (360)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCC--CTTEE---EEEEESEET-TTT
T ss_pred HHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeeccccccccchhhhhhccc--ccccc---eeEecCCcc-ccc
Confidence 6555 4566788887765543 5566666677776666543333334444444433 22333 345677887 455
Q ss_pred HHHHHHhhhhC
Q 025730 239 SWIWGISSEHN 249 (249)
Q Consensus 239 e~i~~i~~~~~ 249 (249)
+.+..+|+++|
T Consensus 156 ~~i~~~~~~~g 166 (360)
T d1w23a_ 156 TQYQNFPEINH 166 (360)
T ss_dssp EECSSCCCCCS
T ss_pred eeeeeccccce
Confidence 55566666654
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=96.92 E-value=0.0036 Score=55.07 Aligned_cols=147 Identities=13% Similarity=0.092 Sum_probs=84.5
Q ss_pred eeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCC----cC---hHHH----HHHHHHHcCCCCC----CEEEeCCHHHH
Q 025730 97 IVKIDANENPYGPPPEVREALGQ-LK--FPYIYPD----PE---SRRL----RAALAKDSGLESD----HILVGCGADEL 158 (249)
Q Consensus 97 ~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~----~g---~~~l----r~~la~~~~~~~~----~I~vt~Ga~~~ 158 (249)
-|.|-..||. .++.+++++.. +. +..+||. .| .+++ .+...+.|+++.. +|-. .+++.+
T Consensus 29 ~l~LiaSEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp-~SGs~A 105 (463)
T d2a7va1 29 GLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQP-YSGSPA 105 (463)
T ss_dssp SEECCTTCCC--CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCC-SSHHHH
T ss_pred CeeEeccCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccc-cccHHH
Confidence 4888888886 46899999876 32 2233432 11 2233 4556667888765 3444 455678
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHHHH--------HHCCC--EEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCC
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDA--------AVNGA--AVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSP 227 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~~~--------~~~G~--~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~P 227 (249)
...++.++++|||+|+..++....+...- ...|. +.+.+..+ +++.+|.+++++.+.+.++|+|++..-
T Consensus 106 n~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S 185 (463)
T d2a7va1 106 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 185 (463)
T ss_dssp HHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEeccc
Confidence 88889999999999998887775443211 11222 23333333 557899999999998889999997654
Q ss_pred CCccccCCChHHHHHHHhhhhC
Q 025730 228 NNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 228 nNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+|--. +-+.+.+||++.|
T Consensus 186 ~y~r~~---d~~~~reIad~vg 204 (463)
T d2a7va1 186 AYARLI---DYARMREVCDEVK 204 (463)
T ss_dssp SCCSCC---CHHHHHHHHHHTT
T ss_pred cccccc---CHHHHHHHhhccc
Confidence 444222 3466777777643
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.85 E-value=0.013 Score=51.57 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=95.6
Q ss_pred CeeeccCCCCCCCCCHHHHHHHHh-cc--CCCCCCC----cC---hHHHH----HHHHHHcCCCCCC--EE-EeCCHHHH
Q 025730 96 DIVKIDANENPYGPPPEVREALGQ-LK--FPYIYPD----PE---SRRLR----AALAKDSGLESDH--IL-VGCGADEL 158 (249)
Q Consensus 96 ~~I~L~~~~~~~~~p~~v~~al~~-~~--~~~~Yp~----~g---~~~lr----~~la~~~~~~~~~--I~-vt~Ga~~~ 158 (249)
.-|.|-..||. .++.+++++.. +. +..+||. .| .+++. +...+.|+.+++. +- =..+++.+
T Consensus 32 ~~l~LIaSEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~A 109 (470)
T d1rv3a_ 32 VGLELIASENF--ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPA 109 (470)
T ss_dssp SSEECCTTCCC--CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred cCceEecCCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccH
Confidence 44899888886 46899999876 32 2223332 12 23333 3345667876542 22 24567778
Q ss_pred HHHHHHHhcCCCCeEEEcCCCChhHHHH----------HHHCCCEEEEecCC-CCCCCCHHHHHHhhccCCceEEEEcCC
Q 025730 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFD----------AAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSP 227 (249)
Q Consensus 159 l~~~~~~~~~pGd~Vlv~~P~y~~~~~~----------~~~~G~~v~~v~~~-~~~~id~e~l~~~i~~~~~k~i~l~~P 227 (249)
...++.++++|||+|+..+.....+... +.....+.+.++.+ +++.+|.+++++.+...++|+|++.--
T Consensus 110 n~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S 189 (470)
T d1rv3a_ 110 NFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTS 189 (470)
T ss_dssp HHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechh
Confidence 8889999999999999887665432211 11122566777755 447899999999988789999996544
Q ss_pred CCccccCCChHHHHHHHhhhhC
Q 025730 228 NNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 228 nNPTG~~~~~~e~i~~i~~~~~ 249 (249)
.+|-= -+-+.+.+||++.|
T Consensus 190 ~y~r~---~d~~~~reIad~vg 208 (470)
T d1rv3a_ 190 CYSRN---LDYGRLRKIADENG 208 (470)
T ss_dssp SCCSC---CCHHHHHHHHHHTT
T ss_pred hcccc---CCHHHHHHHHhccC
Confidence 44321 23466777777643
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=96.58 E-value=0.032 Score=49.09 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=95.6
Q ss_pred CCeeeccCCCCCCCCCHHHHHHHHh-ccCCCCC-C-C--cC----hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHH
Q 025730 95 EDIVKIDANENPYGPPPEVREALGQ-LKFPYIY-P-D--PE----SRRLRAALAKDSGLESDHILVGCGADELIDLIMRC 165 (249)
Q Consensus 95 ~~~I~L~~~~~~~~~p~~v~~al~~-~~~~~~Y-p-~--~g----~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~ 165 (249)
..++-++.+..-+. |.+.+.+.. ....+-| | + +| .-++...|+++.|.+--+.-.-.|++.....++++
T Consensus 65 ~~~~~lG~~~~hy~--P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma 142 (471)
T d1wyub1 65 TTFYPLGSCTMKYN--PKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILII 142 (471)
T ss_dssp TSCCCBTTTCCCCC--CHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH
T ss_pred ccccCCccccCccC--cchhhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHH
Confidence 34566776655443 455555544 3223455 4 2 23 35788899999998755555556776555544443
Q ss_pred h---cCCC----CeEEEcCCCC-hhHHHHHHHCCCEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCCCCccccCCCh
Q 025730 166 V---LDPG----DKIVDCPPTF-TMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWT 237 (249)
Q Consensus 166 ~---~~pG----d~Vlv~~P~y-~~~~~~~~~~G~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~ 237 (249)
. -+.| ..+.+..+.+ ..+.......+.+++.++.+.....|.+.+..... .++.++++.+||+.-+.. ..
T Consensus 143 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~v~v~~p~~~g~~e-~~ 220 (471)
T d1wyub1 143 RAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELG-PHVAALMLTNPNTLGLFE-RR 220 (471)
T ss_dssp HHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCS-TTEEEEEECSSCTTSCCC-TT
T ss_pred HHHhhhcccccccccccCCcccccceeeeeecccceeecccccccccccchhhhhhhh-ccccceeeccCCCccccc-ch
Confidence 2 1122 2344444444 45666667788999999977778889999999887 678899999999855444 55
Q ss_pred HHHHHHHhhhh
Q 025730 238 SSWIWGISSEH 248 (249)
Q Consensus 238 ~e~i~~i~~~~ 248 (249)
.+.+..+++++
T Consensus 221 ~~~~~~~~h~~ 231 (471)
T d1wyub1 221 ILEISRLCKEA 231 (471)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhHHHHHhc
Confidence 66666666654
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=96.44 E-value=0.013 Score=50.23 Aligned_cols=150 Identities=18% Similarity=0.188 Sum_probs=88.8
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCCC----CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFPY----IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~~----~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..+ .+.++ -.|++.+++.+ ++... .++.....++.+.+.+...-..+.+.++++++++.+.+++
T Consensus 35 dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik 114 (387)
T d1vefa1 35 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALK 114 (387)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHH
Confidence 45667888663 44554 45788888765 43221 1222212333344444333333579999999999999987
Q ss_pred Hh--cCCCCeEEEcCCCChhHHHHHHH-CC------------CEEEEecCCCCCCCCHHHHHHhhccCCceEEEEcCC-C
Q 025730 165 CV--LDPGDKIVDCPPTFTMYEFDAAV-NG------------AAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSP-N 228 (249)
Q Consensus 165 ~~--~~pGd~Vlv~~P~y~~~~~~~~~-~G------------~~v~~v~~~~~~~id~e~l~~~i~~~~~k~i~l~~P-n 228 (249)
.. .....+|+...-+|......+.. .| ..+..+|. -|++.+++.++ +++.+|++ -| .
T Consensus 115 ~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-----~d~~~l~~~~~-~~iAavi~-EPi~ 187 (387)
T d1vefa1 115 FARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVD-EETAAVIL-EPVQ 187 (387)
T ss_dssp HHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCC-TTEEEEEE-CSEE
T ss_pred HHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-----CCHHHHHHhcC-CCeEEEEE-ECCC
Confidence 53 12337888888888533222222 22 12344443 27899999997 67777665 45 3
Q ss_pred CccccCCChH---HHHHHHhhhhC
Q 025730 229 NPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 229 NPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.-.|....+. +.+.++|++||
T Consensus 188 g~~G~~~~~~~~l~~l~~lc~~~g 211 (387)
T d1vefa1 188 GEGGVRPATPEFLRAAREITQEKG 211 (387)
T ss_dssp TTTTSEECCHHHHHHHHHHHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHHHcC
Confidence 3356654544 55788999986
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=96.34 E-value=0.0059 Score=53.51 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh-cCCCCeEEEcCCCChhH----HHHHHHCCCEEEEecCCCCCCC
Q 025730 131 SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMY----EFDAAVNGAAVVKVPRKSDFSL 205 (249)
Q Consensus 131 ~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~-~~pGd~Vlv~~P~y~~~----~~~~~~~G~~v~~v~~~~~~~i 205 (249)
..+|.+.|++..|.+.-+.-.-.|++.....++.+. ....+++++..-.++.+ ...++..|.+++.++.+++ ..
T Consensus 110 l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~-~~ 188 (437)
T d1wyua1 110 TFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGG-RT 188 (437)
T ss_dssp HHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTT-BC
T ss_pred HHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccc-cc
Confidence 357888888888977666666678877766665543 23457899988888643 3445668999999997543 33
Q ss_pred CHHHHHHhhccCCceEEEEcCCCCccccCCChHHHHHHHhhhhC
Q 025730 206 NVELIADAVEREKPKCIFLTSPNNPDGRFSWTSSWIWGISSEHN 249 (249)
Q Consensus 206 d~e~l~~~i~~~~~k~i~l~~PnNPTG~~~~~~e~i~~i~~~~~ 249 (249)
+.++ +. +++.+|++.+||. .|.+ .+.+.+..++++.|
T Consensus 189 ~~~~----~~-~~~Aavmi~~Pnt-~G~~-ed~~~i~~~~h~~G 225 (437)
T d1wyua1 189 PLPE----VG-EEVGAVVVQNPNF-LGAL-EDLGPFAEAAHGAG 225 (437)
T ss_dssp CCCC----CC-TTEEEEEEESSCT-TSBC-CCHHHHHHHHHHTT
T ss_pred hhhh----hc-cceeEEEEccccc-cccc-cchHHHHHHhhhcc
Confidence 3222 34 6889999999975 7887 56677777777754
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=95.99 E-value=0.041 Score=47.54 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=89.0
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCCCCC--CCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHHh
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFPYIY--PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~~~Y--p~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~~~ 166 (249)
.++..||+..+ .+.++ ..|.+.+++.+ ++....+ +.....++.+.+++..+ ..+.+.++++++++++.+++..
T Consensus 50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~~v~f~~sGseA~e~Alk~a 128 (427)
T d2gsaa_ 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRLM 128 (427)
T ss_dssp TSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCccccchhHHHHHHHHHHhhCC-ccccccccCCcHHHHHHHHHHH
Confidence 45678998766 34443 45788888876 4433222 22223445566665554 2467899999999999998854
Q ss_pred c--CCCCeEEEcCCCChhHHHHH--------HHCCC------------EEEEecCCCCCCCCHHHHHHhhcc--CCceEE
Q 025730 167 L--DPGDKIVDCPPTFTMYEFDA--------AVNGA------------AVVKVPRKSDFSLNVELIADAVER--EKPKCI 222 (249)
Q Consensus 167 ~--~pGd~Vlv~~P~y~~~~~~~--------~~~G~------------~v~~v~~~~~~~id~e~l~~~i~~--~~~k~i 222 (249)
. ....+|+...-.|......+ ...+. +...++ .-|++.+++.+++ .++.+|
T Consensus 129 r~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~le~~~~~~~~~iaav 203 (427)
T d2gsaa_ 129 RAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP-----YNDLEAVKALFAENPGEIAGV 203 (427)
T ss_dssp HHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC-----TTCHHHHHHHHTTSTTTEEEE
T ss_pred HHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC-----cchHHHHHHHHHhCCCCeEEE
Confidence 2 23367888777775221110 01111 122222 2478999998874 244455
Q ss_pred EEcCC-CCccccCCChH---HHHHHHhhhhC
Q 025730 223 FLTSP-NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 223 ~l~~P-nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
++ -| .--.|.+.++. +.+.++|++||
T Consensus 204 i~-Epi~g~~G~~~~~~~~l~~l~~lc~~~~ 233 (427)
T d2gsaa_ 204 IL-EPIVGNSGFIVPDAGFLEGLREITLEHD 233 (427)
T ss_dssp EE-CSSBCSSSCBCCCTTHHHHHHHHHHHTT
T ss_pred EE-cCCcCCCCCccCCHHHHHHHHHHHHHhc
Confidence 54 45 23357665554 55788999986
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.062 Score=46.01 Aligned_cols=149 Identities=11% Similarity=0.071 Sum_probs=90.4
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC---C-CCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP---Y-IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~---~-~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..+ ...++ ..|.+.+++.+ ++.. . .|......++.+.+++..+ .+.+.++++++++.+.+++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~sGseA~e~Aik 116 (404)
T d2byla1 39 EGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACK 116 (404)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhccc--ccccccccCccccchhHHH
Confidence 45677888775 33333 45788888876 4332 1 1223335567777887776 4689999999999999987
Q ss_pred Hhc---------C-CCCeEEEcCCCChhHHHHHHHCC-------------CEEEEecCCCCCCCCHHHHHHhhccCCceE
Q 025730 165 CVL---------D-PGDKIVDCPPTFTMYEFDAAVNG-------------AAVVKVPRKSDFSLNVELIADAVEREKPKC 221 (249)
Q Consensus 165 ~~~---------~-pGd~Vlv~~P~y~~~~~~~~~~G-------------~~v~~v~~~~~~~id~e~l~~~i~~~~~k~ 221 (249)
... . ...+++...-.|......+.... ..+..+|. -|++++++.+.++++.+
T Consensus 117 ~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-----~d~~~l~~~l~~~~iAa 191 (404)
T d2byla1 117 LARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-----NDLPALERALQDPNVAA 191 (404)
T ss_dssp HHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-----TCHHHHHHHHTSTTEEE
T ss_pred HHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-----cCHHHHHHhcCCCCeEE
Confidence 642 1 12466666655542111111111 12333332 37899999997566666
Q ss_pred EEEcCC-CCccccCCChH---HHHHHHhhhhC
Q 025730 222 IFLTSP-NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 222 i~l~~P-nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
|++ -| ..-.|...++. +.+.++|++||
T Consensus 192 vii-EPi~g~~G~~~~~~~~l~~l~~lc~~~g 222 (404)
T d2byla1 192 FMV-EPIQGEAGVVVPDPGYLMGVRELCTRHQ 222 (404)
T ss_dssp EEE-CSSBTTTTSBCCCTTHHHHHHHHHHHHT
T ss_pred EEE-CCccCCCCCccCCHHHHHHHHHHHHhcC
Confidence 665 55 44457665544 55788999986
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=94.22 E-value=0.35 Score=41.29 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=59.8
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-cc---C-CCCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LK---F-PYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~---~-~~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..+ ...++ ..|++.+++.+ +. . ...|+.....+|-+.|++...-..+.+.++++++++.+.+++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk 118 (431)
T d1zoda1 39 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIR 118 (431)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHH
Confidence 45678888765 44554 45788888765 32 1 123333334566677777664345789999999999999988
Q ss_pred Hh--cCCCCeEEEcCCCChhHH
Q 025730 165 CV--LDPGDKIVDCPPTFTMYE 184 (249)
Q Consensus 165 ~~--~~pGd~Vlv~~P~y~~~~ 184 (249)
.. ....++|+...-.|....
T Consensus 119 ~Ar~~t~r~~i~~~~~~yHG~t 140 (431)
T d1zoda1 119 MAKLVTGKYEIVGFAQSWHGMT 140 (431)
T ss_dssp HHHHHHTCCEEEEETTCCCCSS
T ss_pred HHHHhcCCcceeeccccccccc
Confidence 53 223377888777776433
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=93.50 E-value=0.21 Score=42.97 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=88.3
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC-----CCCCCcChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP-----YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIM 163 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~-----~~Yp~~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~ 163 (249)
.+...||+..+ ...++ ..|.+.+++.+ +... ..++.....++.+.+.+.....-+.+.++++++++.+.++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~ 120 (429)
T d1s0aa_ 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAM 120 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHH
T ss_pred CCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccCcceeeeccccccchhhhh
Confidence 34567898776 34454 56888888875 3221 1222223455677777777666678999999999999887
Q ss_pred HHhc-------CCCCeEEEcCCCChhHHH-HHHHCC-------------CEEEEecCC------CCCCCCHHHHHHhhcc
Q 025730 164 RCVL-------DPGDKIVDCPPTFTMYEF-DAAVNG-------------AAVVKVPRK------SDFSLNVELIADAVER 216 (249)
Q Consensus 164 ~~~~-------~pGd~Vlv~~P~y~~~~~-~~~~~G-------------~~v~~v~~~------~~~~id~e~l~~~i~~ 216 (249)
+... ....+|+...-.|..... .....| ......|.. ....-+++.+++.+.+
T Consensus 121 k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (429)
T d1s0aa_ 121 KMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAA 200 (429)
T ss_dssp HHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHH
T ss_pred hhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhh
Confidence 6542 233578888887753222 222221 112222210 1112245555554432
Q ss_pred --CCceEEEEcCC--CCccccCCChH---HHHHHHhhhhC
Q 025730 217 --EKPKCIFLTSP--NNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 217 --~~~k~i~l~~P--nNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
.++.+|++ -| .+--|...++. +.+.++|++||
T Consensus 201 ~~~~iaaviv-EPi~~~~gg~~~~~~~fl~~lr~lc~~~g 239 (429)
T d1s0aa_ 201 HRHEIAAVII-EPIVQGAGGMRMYHPEWLKRIRKICDREG 239 (429)
T ss_dssp HTTTEEEEEE-CSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred cCCccceeee-cceeccCCCccCCCHHHHHHHHHHHHHcC
Confidence 34555554 44 35455544443 55888999986
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=0.43 Score=40.67 Aligned_cols=91 Identities=10% Similarity=0.045 Sum_probs=58.9
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCCCC---C--CCcChHHHHHHHHHHcCCC-CCCEEEeCCHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFPYI---Y--PDPESRRLRAALAKDSGLE-SDHILVGCGADELIDLI 162 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~~~---Y--p~~g~~~lr~~la~~~~~~-~~~I~vt~Ga~~~l~~~ 162 (249)
.+...||+..+ ...++ ..|.+.+++.+ +..... + ......+|-+.+.+.+.-. .+.++++++++++.+.+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~A 117 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENA 117 (425)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhH
Confidence 45678888776 45555 56888888876 443211 1 1122445667777776432 35789999999999999
Q ss_pred HHHhc--CCCCeEEEcCCCChhH
Q 025730 163 MRCVL--DPGDKIVDCPPTFTMY 183 (249)
Q Consensus 163 ~~~~~--~pGd~Vlv~~P~y~~~ 183 (249)
++... ..-.+|+...-.|...
T Consensus 118 lk~ar~~t~r~~ii~~~~~yHG~ 140 (425)
T d1sffa_ 118 VKIARAATKRSGTIAFSGAYHGR 140 (425)
T ss_dssp HHHHHHHHTCCEEEEETTCCCCS
T ss_pred HHHhhhhhcccceEeecCCCcCc
Confidence 87542 2236788888877643
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.04 E-value=1.6 Score=37.35 Aligned_cols=74 Identities=7% Similarity=0.059 Sum_probs=44.3
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccC-----CCCCCCcChHHHHHHHHHHc----CCCCCCEEEeCCHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKF-----PYIYPDPESRRLRAALAKDS----GLESDHILVGCGADELI 159 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~-----~~~Yp~~g~~~lr~~la~~~----~~~~~~I~vt~Ga~~~l 159 (249)
.+...||+..+ .+.++ ..|++.+++.+ +.. ...+.......+.+.+++.+ .-.-+.++++++++++.
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAv 130 (461)
T d1ohwa_ 51 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSN 130 (461)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHH
T ss_pred CCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhh
Confidence 45667888654 33343 35788888875 321 11222222333445555543 33456899999999999
Q ss_pred HHHHHHh
Q 025730 160 DLIMRCV 166 (249)
Q Consensus 160 ~~~~~~~ 166 (249)
+.+++..
T Consensus 131 e~Aik~A 137 (461)
T d1ohwa_ 131 ENAFKTI 137 (461)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=90.98 E-value=2.2 Score=35.65 Aligned_cols=155 Identities=12% Similarity=0.054 Sum_probs=80.8
Q ss_pred CCCCeeeccCC--CCCCC-CCHHHHHHHHh-ccCC-CCCCC---cChHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHH
Q 025730 93 KPEDIVKIDAN--ENPYG-PPPEVREALGQ-LKFP-YIYPD---PESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164 (249)
Q Consensus 93 ~~~~~I~L~~~--~~~~~-~p~~v~~al~~-~~~~-~~Yp~---~g~~~lr~~la~~~~~~~~~I~vt~Ga~~~l~~~~~ 164 (249)
.+...||+..+ ...++ ..|.+.+++.+ +... ..+.. .....+.+.+++..+ .+.+.++++++++...+++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~sgs~a~~~a~k 114 (404)
T d1z7da1 37 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYK 114 (404)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccccchHHHHHHHHhhhhccc--cceeeeeccccchHHHHHH
Confidence 35567888766 34444 46888888875 4321 11111 113445555565656 4678899999999998876
Q ss_pred Hhc----------CCCCeEEEcCCCChhHHHHHHH-CCCEE---EEecCCC----CCCCCHHHHHHhhccCCceEEEEcC
Q 025730 165 CVL----------DPGDKIVDCPPTFTMYEFDAAV-NGAAV---VKVPRKS----DFSLNVELIADAVEREKPKCIFLTS 226 (249)
Q Consensus 165 ~~~----------~pGd~Vlv~~P~y~~~~~~~~~-~G~~v---~~v~~~~----~~~id~e~l~~~i~~~~~k~i~l~~ 226 (249)
... ....+++...-.|......... .+... ...|... ...-+.+.++..+...++.+|++--
T Consensus 115 ~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EP 194 (404)
T d1z7da1 115 LCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEP 194 (404)
T ss_dssp HHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECS
T ss_pred HHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEE
Confidence 431 1224576666666533222211 11110 0111000 0112578888887755666666533
Q ss_pred CCCccccCCChH---HHHHHHhhhhC
Q 025730 227 PNNPDGRFSWTS---SWIWGISSEHN 249 (249)
Q Consensus 227 PnNPTG~~~~~~---e~i~~i~~~~~ 249 (249)
-..-.|.+.++. +.+.++|++||
T Consensus 195 i~g~~G~~~~~~~fl~~l~~lc~~~g 220 (404)
T d1z7da1 195 IQGEAGVIVPSDNYLQGVYDICKKYN 220 (404)
T ss_dssp SBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred EcCCCCCccCCHHHHHHHHHHHHHcC
Confidence 344567765554 56888999986
|