Citrus Sinensis ID: 025732

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIEEN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHHHcccccccccccccccccccccccccccEEcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHcccEEEEEEEEHHHccccccEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFvvtfykgppligelshsgsprrlllspqlswilGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVvsepsdwklglDIGLVAVLYSAVIGTGFRVGLCTWclsrtgplyvsmfkPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMwgkskeekttedcglgsvnssrekvpllqnrieen
Flexible Loop (DISEMBL)
MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEkttedcglgsvnssrekvpllqnrieen
Low Complexity Region (SEG)
MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGElshsgsprrlllspqlsWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIEEN
Disordered region (IsUnstruct)
**NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG*********************************
Disordered Region (DISOPRED)
*LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL****************WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG*********************************
Disordered Region (DISEMBL)
MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS*************VNSSREKVPLLQNRIEEN
Disordered Region (DISPRO)
MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH************LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS*******************************
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIEEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q9FL08	368	WAT1-related protein At5g	yes	no	0.963	0.652	0.384	3e-45
Q94JU2	367	WAT1-related protein At3g	no	no	0.951	0.645	0.402	7e-43
F4KHA8	370	WAT1-related protein At5g	no	no	0.963	0.648	0.367	5e-40
Q8VYZ7	360	WAT1-related protein At3g	no	no	0.947	0.655	0.378	2e-39
Q56X95	355	WAT1-related protein At3g	no	no	0.927	0.650	0.361	3e-38
Q9LRS5	353	WAT1-related protein At3g	no	no	0.931	0.657	0.382	7e-37
Q945L4	339	WAT1-related protein At5g	no	no	0.907	0.666	0.357	7e-36
F4IYZ0	358	WAT1-related protein At3g	no	no	0.923	0.642	0.361	2e-35
Q501F8	373	WAT1-related protein At4g	no	no	0.911	0.608	0.334	9e-35
Q9LPF1	370	WAT1-related protein At1g	no	no	0.899	0.605	0.353	2e-34

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 145/252 (57%), Gaps = 12/252 (4%)

Query: 3   NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS 62
           NL PAFTF LA+IFR+E++   + ++QAK +G   SI GA VV  YKGP ++   S +  
Sbjct: 118 NLTPAFTFTLAVIFRMEQVRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTV 177

Query: 63  PRRLLLSPQL-----SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNT 117
              + L  QL     SWI+GG  LA++ F+ S W+ILQ  ++  +   + ++F+   F T
Sbjct: 178 LPTVTLHQQLTSIESSWIIGGLLLASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFAT 237

Query: 118 ILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP 177
           ++S    L   S  + W L  DI L A++YS V  + F     TW L   GP+Y+S+F+P
Sbjct: 238 LISVPVCLFAESNLTSWVLKPDISLAAIIYSGVFVSLFSALTHTWGLHLKGPVYISLFRP 297

Query: 178 LAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSRE 237
           L+I  ++ M  + +GDA  LGS+IG+MI+  GFY V+WGK++E+      G        E
Sbjct: 298 LSIAIAVAMGAIFLGDALHLGSVIGSMILCIGFYTVIWGKAREDTIKTVAG-------SE 350

Query: 238 KVPLLQNRIEEN 249
           + PLL   I E+
Sbjct: 351 QSPLLLTHIIED 362

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  174 bits (440), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 19/256 (7%)

Query: 3   NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS 62
           NL PAFTF+LA++FR+E ++++  SS AK LGT  SIGGAF+VT Y GP +I +   S S
Sbjct: 110 NLTPAFTFLLAVVFRMESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS 169

Query: 63  PRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTA 122
            R    +P   WILG  FLA E F    W+I+Q  I+R++ A   +   + F++  +S  
Sbjct: 170 LRSQSTNPN--WILGAGFLAVEYFCVPLWYIVQTQIMREYPAEFTV---VCFYSIGVSFW 224

Query: 123 FALIVV-SEPSD---WKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL 178
            AL+ + +E +D   WK+  +I LV+++ S + G+     + TW L   GPL+V+MFKPL
Sbjct: 225 TALVTLFTEGNDLGAWKIKPNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPL 284

Query: 179 AIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSRE- 237
           +I  ++ M V+ + D+  +GSLIGA +I  GFY VMWGK+KE    ED    +   + E 
Sbjct: 285 SIAIAVAMGVIFLRDSLYIGSLIGATVITIGFYTVMWGKAKEVALVEDDNKANHEEANEA 344

Query: 238 ---------KVPLLQN 244
                    K PLL++
Sbjct: 345 DLDSPSGSQKAPLLES 360

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  164 bits (415), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/253 (36%), Positives = 145/253 (57%), Gaps = 13/253 (5%)

Query: 3   NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS 62
           NL PAFTF LA+IFR+E++   + ++QAK +GT  SI GA VV  YKGP ++ + S +  
Sbjct: 119 NLTPAFTFTLAVIFRMEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPP 178

Query: 63  PRRLLLSPQL-----SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNT 117
              + L   L     SWI+GG  LA +  + S W+ILQ  ++  +   + ++F      T
Sbjct: 179 SPTISLYQHLTSFDSSWIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCAT 238

Query: 118 ILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP 177
           ++S    L    + + + L   + L +V+YS  + + F   + TW L   GP+Y+S+FKP
Sbjct: 239 LISAPVCLFAEKDLNSFILKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKP 298

Query: 178 LAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSRE 237
           L+IV ++ M V+ +GDA  LGS+IG++I+  GFY V+WGK++E+      G        E
Sbjct: 299 LSIVIAVAMGVMFLGDALYLGSVIGSLILSLGFYTVIWGKAREDSIKTVAG-------TE 351

Query: 238 KVPLL-QNRIEEN 249
           + PLL  + IEE 
Sbjct: 352 QSPLLPSHTIEEE 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYZ7|WTR20_ARATH WAT1-related protein At3g28070 OS=Arabidopsis thaliana GN=At3g28070 PE=2 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/256 (37%), Positives = 148/256 (57%), Gaps = 20/256 (7%)

Query: 3   NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS 62
           N+ PA TF+LAIIFR+EK++++ +SS AK +GT  S+ GA VV FY GP     +  + S
Sbjct: 115 NITPALTFILAIIFRMEKVSFKERSSLAKLMGTILSLIGALVVIFYHGP----RVFLASS 170

Query: 63  PRRL---LLSPQLS-----WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF 114
           P  +     SP LS     W++GG  L  +    S  FILQA I+  + A   + F    
Sbjct: 171 PPYVNFRQFSPPLSSSNSDWLIGGALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTV 230

Query: 115 FNTILSTAFALIV-VSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVS 173
             +I+++   L+V  + PS W +  DI L+ ++  A++ + + V + +W +   GPLY++
Sbjct: 231 CVSIVTSTIGLVVEKNNPSVWIIHFDITLITIVTMAIVTSVYYV-IHSWTVRHKGPLYLA 289

Query: 174 MFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVN 233
           +FKPL+I+ ++VM  + + D+  LG LIG ++I  GFYAVMWGK+ EEK           
Sbjct: 290 IFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLSF------ 343

Query: 234 SSREKVPLLQNRIEEN 249
           S +EK PLL NR  + 
Sbjct: 344 SEKEKTPLLLNRKNDQ 359

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 145/260 (55%), Gaps = 29/260 (11%)

Query: 3   NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS 62
           N+ PA TF+LAIIFR+EK +++ KSS AK +GT  S+ GA VV  Y GP +    + S  
Sbjct: 111 NINPAITFILAIIFRMEKASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRV---FTPSSP 167

Query: 63  PRRLLLSPQL------------SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF 110
           P      PQL             WI+GG  LA +  +    FILQA I++ + A   + F
Sbjct: 168 PF-----PQLRQLLLPLSSSNSDWIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSF 222

Query: 111 YLFFFNTILSTAFALIV-VSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGP 169
           + F   +IL++   ++   + PS W +  DI LV ++   +   G+   +  W +   GP
Sbjct: 223 FYFLIASILTSLIGIVAEKNNPSIWIIHFDITLVCIVVGGIFNPGYY-AIHLWAVRNKGP 281

Query: 170 LYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGL 229
           +Y+++F+PL+I+ +++M  + +GD+F LGSL+G ++I  GFY VMWGK+KE KT      
Sbjct: 282 VYLAIFRPLSILIAVIMGAIFLGDSFYLGSLVGGILISLGFYTVMWGKAKEGKT------ 335

Query: 230 GSVNSSREKVPLLQNRIEEN 249
               S  E+ PLL   I++ 
Sbjct: 336 -QFLSLSEETPLLDENIDDR 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  154 bits (388), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/251 (38%), Positives = 145/251 (57%), Gaps = 19/251 (7%)

Query: 3   NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS 62
           N+ PA TF+LAIIFR+EK++++ +SS AK +GT  S+ GA VV  Y GP     +  + S
Sbjct: 112 NITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVVLYHGP----RVFVASS 167

Query: 63  PRRL--------LLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF 114
           P  +        L S    W++GG  L       S  FILQA I+  + A   + F    
Sbjct: 168 PPYINFRQLSPPLSSSNSDWLIGGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFLYIV 227

Query: 115 FNTILSTAFALIV-VSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVS 173
             +I+++   L+V  + PS W +  DI L+ ++  A+I + + V + +W +   GPLY++
Sbjct: 228 SVSIVTSMIGLVVEKNNPSVWIIRFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYLA 286

Query: 174 MFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVN 233
           +FKPL+I+ ++VM  V + D+  LG LIG ++I  GFYAVMWGK+ EEK   D  L  + 
Sbjct: 287 IFKPLSILIAVVMSAVFLNDSLYLGCLIGGLLITLGFYAVMWGKANEEK---DQLL--LV 341

Query: 234 SSREKVPLLQN 244
           S +E+ PLL N
Sbjct: 342 SGKERTPLLLN 352

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  150 bits (380), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/246 (35%), Positives = 142/246 (57%), Gaps = 20/246 (8%)

Query: 1   MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 60
           M N+ PAFTF+LA++FR+E ++   KSS AK LGT  SI GA VVT Y GP         
Sbjct: 109 MSNVNPAFTFILAVVFRMENISLGKKSSVAKVLGTILSIIGALVVTLYHGP--------- 159

Query: 61  GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTIL 119
                +L+S    WI+GG  LA +  + S  +++ A  + ++ +AV++ + +      + 
Sbjct: 160 -----MLMSSHSDWIIGGGLLALQYILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVC 214

Query: 120 STAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLA 179
           +    L     P  W +  DI L+ V+ + ++ +G+ V + TW +S  GP+Y+SMFKPL+
Sbjct: 215 AFVSLLAEKDNPKAWVIRFDITLITVVATGILNSGYYV-IHTWAVSHKGPVYLSMFKPLS 273

Query: 180 IVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSS-REK 238
           I+ + V   + +G++  LGS++G ++I  GFY V+WGK+KE+K      +G++ SS    
Sbjct: 274 ILIAAVSTFIFLGESLYLGSVMGGILISIGFYMVLWGKAKEDKVDI---IGAIESSPSHN 330

Query: 239 VPLLQN 244
            PLL N
Sbjct: 331 APLLDN 336

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/249 (36%), Positives = 142/249 (57%), Gaps = 19/249 (7%)

Query: 3   NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS 62
           N++PA TF+LA+IFR+EK++++ +SS AK +GT  S+ GAFVV FY GP     +  + S
Sbjct: 112 NIVPALTFILAVIFRMEKVSFKERSSVAKVMGTILSLIGAFVVIFYHGP----RVFVASS 167

Query: 63  PRRL--------LLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF 114
           P  L        L S +  W++GG  L  +    S  FILQ  I+R++     +      
Sbjct: 168 PPYLNFRQLSPPLSSSKSDWLIGGAILTIQGIFVSVSFILQTHIMREYPEAFTVSILYIL 227

Query: 115 FNTILSTAFALIV-VSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVS 173
             +I+++   L+V  + PS W +  DI L  ++ + +I + + V + +W +    PLY++
Sbjct: 228 CISIVTSMIGLVVEKNNPSIWIIHFDITLFTIVTTGIITSVYYV-IHSWAIRHKRPLYLA 286

Query: 174 MFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVN 233
           +FKPL+I+ ++VM  + + D+  LG LIG ++I  GFY VMWGK+ EEK           
Sbjct: 287 IFKPLSILIAVVMGTIFLNDSLYLGCLIGGILITLGFYVVMWGKANEEKNKLLS-----F 341

Query: 234 SSREKVPLL 242
           S +EK PLL
Sbjct: 342 SGKEKTPLL 350

Arabidopsis thaliana (taxid: 3702)

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score =  147 bits (370), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 140/236 (59%), Gaps = 9/236 (3%)

Query: 2   LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL---- 57
           +N +PA TF++A+IFR+E +N +   S AK +GT  ++GGA V+T YKGP +  EL    
Sbjct: 108 VNALPAITFIMAVIFRIETVNLKKTRSLAKVIGTAITVGGAMVMTLYKGPAI--ELFKTA 165

Query: 58  ---SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF 114
               H GS      +   +W+ G   +       + +FILQ+  L+K+ A L ++ ++  
Sbjct: 166 HSSLHGGSSGTSSETTDQNWVTGTLAVMGSITTWAGFFILQSFTLKKYPAELSLVMWICA 225

Query: 115 FNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSM 174
             T+L+T  +LI+V + S WK+G+D G +A +YS V+ +G    + +  +   GP++ + 
Sbjct: 226 MGTVLNTIASLIMVRDVSAWKVGMDSGTLAAVYSGVVCSGMAYYIQSIVIRERGPVFTTS 285

Query: 175 FKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLG 230
           F P+ ++ +  + V+++ +   LGS+IGA+ IV G Y+V+WGK+K+E  + +  +G
Sbjct: 286 FSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVFGLYSVVWGKAKDEVISVEEKIG 341

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 136/226 (60%), Gaps = 2/226 (0%)

Query: 3   NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL-IGELSHSG 61
           N +PA TF+LA+IFRLE +N+    S AK +GT  ++GGA ++T YKGP + I + +H+ 
Sbjct: 109 NALPAVTFILALIFRLETVNFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNS 168

Query: 62  SPRRLLLSPQ-LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
                  +P    W+LG   +       +A+FILQ+  L+ + A L ++  +    TIL+
Sbjct: 169 FHGGSSSTPTGQHWVLGTIAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILN 228

Query: 121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
              +LI+V +PS WK+G+D G +A +YS V+ +G    + +  + + GP++ + F P+ +
Sbjct: 229 AIASLIMVRDPSAWKIGMDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCM 288

Query: 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTED 226
           + +  +  +++ +   LGS+IGA+ IV G Y+V+WGKSK+E    D
Sbjct: 289 IITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGKSKDEVNPLD 334

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
255581160	356	Auxin-induced protein 5NG4, putative [Ri	0.995	0.696	0.633	3e-85
147778659	335	hypothetical protein VITISV_034106 [Viti	0.987	0.734	0.550	5e-70
296086518	356	unnamed protein product [Vitis vinifera]	0.987	0.691	0.546	5e-70
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.959	0.690	0.554	2e-68
356502002	351	PREDICTED: auxin-induced protein 5NG4-li	0.975	0.692	0.530	1e-67
356497781	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.975	0.692	0.538	3e-67
224099697	355	predicted protein [Populus trichocarpa]	0.995	0.698	0.514	9e-67
356497783	347	PREDICTED: auxin-induced protein 5NG4-li	0.959	0.688	0.514	3e-66
224057230	355	predicted protein [Populus trichocarpa]	0.983	0.690	0.468	4e-62
357486015	598	Auxin-induced protein 5NG4 [Medicago tru	0.975	0.406	0.504	1e-61

>gi|255581160|ref|XP_002531393.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528986|gb|EEF30977.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 157/248 (63%), Positives = 191/248 (77%)

Query: 1   MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 60
           MLNLIPAFTF+LAIIFRLEKL+  +KSS AKSLGT  SI GAFVVTFY+GP + G  SH 
Sbjct: 108 MLNLIPAFTFILAIIFRLEKLDRRSKSSIAKSLGTIVSIAGAFVVTFYEGPTVFGIASHI 167

Query: 61  GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
               +L  SPQ  W++G  FLAAEA M+SAW+ILQ  IL+KF AVLII+ YL FFNT+LS
Sbjct: 168 KESHQLFHSPQFFWMIGALFLAAEALMDSAWYILQTFILKKFPAVLIIICYLCFFNTVLS 227

Query: 121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
             FALIVV + + WK+  +IGL  +LY+AVIG  FR+ L  WCLSRTGPLYV++FKPLAI
Sbjct: 228 AIFALIVVEDRNSWKIKPNIGLATILYTAVIGLAFRISLVAWCLSRTGPLYVTLFKPLAI 287

Query: 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVP 240
           +F+++MD +I+GD  CLGSLIGA+IIV GFY VMWGK+KEEK  +D  +GS  SS + VP
Sbjct: 288 IFAVIMDAIILGDPLCLGSLIGAIIIVTGFYWVMWGKAKEEKAGDDSAVGSCESSSDNVP 347

Query: 241 LLQNRIEE 248
           LL +  EE
Sbjct: 348 LLGDLAEE 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778659|emb|CAN71719.1| hypothetical protein VITISV_034106 [Vitis vinifera]

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 136/247 (55%), Positives = 174/247 (70%), Gaps = 1/247 (0%)

Query: 1   MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 60
           MLNL+P FTF+LAIIFR+E+L+W   SS AKS+GT  SI GAF+VTFYKG P++   S S
Sbjct: 82  MLNLVPGFTFILAIIFRMERLDWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPS 140

Query: 61  GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
             P +L LS Q +W+ GG  LAA+  M+SAW ILQA IL+K+ A LII FY  FF  I S
Sbjct: 141 NFPDQLFLSQQSNWVFGGLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQS 200

Query: 121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
            A +LI+   P  W L      +AV+YS V G  F+VG  TWC+ + GP++V+MFKP+ I
Sbjct: 201 AAASLIMERGPGAWSLKPSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGI 260

Query: 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVP 240
           V +I M V+ +GD F +GSLIGA +IV GFY+VMWGK+KEEK  ED G+ S+ S+ +K P
Sbjct: 261 VVAIAMGVIFLGDTFYMGSLIGATVIVIGFYSVMWGKAKEEKIDEDIGVRSLESTSQKAP 320

Query: 241 LLQNRIE 247
           LLQN IE
Sbjct: 321 LLQNYIE 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086518|emb|CBI32107.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 135/247 (54%), Positives = 174/247 (70%), Gaps = 1/247 (0%)

Query: 1   MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 60
           MLNL+P FTF+LAIIFR+E+L+W   SS AKS+GT  SI GAF+VTFYKG P++   S S
Sbjct: 103 MLNLVPGFTFILAIIFRMERLDWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPS 161

Query: 61  GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
             P +L LS Q +W+ GG  LAA+  M+SAW ILQA IL+K+ A LII FY  FF  I S
Sbjct: 162 NFPDQLFLSQQSNWVFGGLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQS 221

Query: 121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
            A +LI+   P  W L      +AV+YS V G  F+VG  TWC+ + GP++V+MFKP+ I
Sbjct: 222 AAASLIMERGPGAWSLKPSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGI 281

Query: 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVP 240
           V ++ M V+ +GD F +GSLIGA +IV GFY+VMWGK+KEEK  ED G+ S+ S+ +K P
Sbjct: 282 VVAVAMGVIFLGDTFYMGSLIGATVIVIGFYSVMWGKAKEEKIDEDIGMRSLESTSQKAP 341

Query: 241 LLQNRIE 247
           LLQN IE
Sbjct: 342 LLQNYIE 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 137/247 (55%), Positives = 177/247 (71%), Gaps = 8/247 (3%)

Query: 1   MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 60
           MLNL+PAFTF+LA+I R+EKL  +  SS AKS+G   S+ GAFVVTFYKGPP++   S S
Sbjct: 105 MLNLVPAFTFILAVICRMEKLELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFS 164

Query: 61  GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
            S  ++  S Q  W+LGGF LA E+ + S W+ILQA IL+K  AVL I F+  FF +I+S
Sbjct: 165 DSSNQIF-SSQSHWVLGGFLLADESLLASMWYILQATILKKHPAVLTITFFYCFFISIIS 223

Query: 121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
            A +L+   +PS W+L LD+GL+AVLYSA++G   R+ +CTWC+ R GPL+ SMFKPL I
Sbjct: 224 LAISLVAERDPSAWRLKLDVGLLAVLYSAIVGNVIRISMCTWCVRRAGPLFCSMFKPLGI 283

Query: 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVP 240
           VF+ VM V+  GDA  LGSL+GA+IIV GFYAVMWGK+KE +       G +  SR KVP
Sbjct: 284 VFAFVMGVIFSGDALHLGSLVGAIIIVTGFYAVMWGKAKEAEE------GRLECSR-KVP 336

Query: 241 LLQNRIE 247
           LLQN+ +
Sbjct: 337 LLQNQTD 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502002|ref|XP_003519811.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 130/245 (53%), Positives = 172/245 (70%), Gaps = 2/245 (0%)

Query: 1   MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 60
           MLNLIPAFTF+LA+IFR+E+++W + SSQAK LGT  SIGGAFVV  YKGPP I +   S
Sbjct: 108 MLNLIPAFTFILALIFRMEEVHWRHSSSQAKVLGTLISIGGAFVVILYKGPP-IFKTHWS 166

Query: 61  GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
            S  +L  S Q++WILGG F   ++ + S W+I QA +  KF AV +I+F+   F+TI  
Sbjct: 167 NSSNKLQFSQQINWILGGIFCVGDSIVCSLWYIYQASVAHKFPAVTVIVFFQLLFSTIQC 226

Query: 121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
             FALI V +P++W+L  DIGL+ +LY A+  T  R  LCTWC+ + GPL+ SMFKP++I
Sbjct: 227 AVFALIAVPDPTEWELKFDIGLIGILYQAIAATLIRYILCTWCVLKAGPLFCSMFKPVSI 286

Query: 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVP 240
           +F++ M  + +GD   LGSLIGA+IIV GFYAV+WGKS EE      G+ ++ SS   VP
Sbjct: 287 IFTVFMAAIFLGDDLSLGSLIGAVIIVIGFYAVLWGKSIEENKIVK-GVENLESSCHNVP 345

Query: 241 LLQNR 245
           LLQNR
Sbjct: 346 LLQNR 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497781|ref|XP_003517736.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 132/245 (53%), Positives = 173/245 (70%), Gaps = 2/245 (0%)

Query: 1   MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 60
           MLNLIPAFTF+LA+IFR+E+++W++ SSQAK LGT  SI GAFVV  YKGPP I +   S
Sbjct: 108 MLNLIPAFTFILALIFRMEEVHWKHSSSQAKFLGTIVSIAGAFVVILYKGPP-IFKTHLS 166

Query: 61  GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
            S  + L S QL+WILGG F A ++ + S W+I QA +  K+ AV  I+F+   F+TI  
Sbjct: 167 NSSNKFLFSQQLNWILGGMFCAGDSIVCSLWYIYQASVAYKYPAVTTIVFFQLLFSTIQC 226

Query: 121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
             FALIVV   ++W+L LDIGL+ ++Y A+  T  R  LCTWC+ + GPL+ SMFKP+AI
Sbjct: 227 GVFALIVVQXSNEWELKLDIGLIGIVYQAIAATLIRYILCTWCVLKAGPLFCSMFKPVAI 286

Query: 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVP 240
           +FS+ M  + +GD   LGSLIGA+IIV GFYAV+WGKS E+   E  G+ ++ SS   VP
Sbjct: 287 IFSVFMGAIFLGDDLSLGSLIGAVIIVIGFYAVLWGKSIEDNKIEK-GVENLESSCHNVP 345

Query: 241 LLQNR 245
           LLQNR
Sbjct: 346 LLQNR 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 128/249 (51%), Positives = 172/249 (69%), Gaps = 1/249 (0%)

Query: 1   MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 60
           MLNLIP  TF+LA+ FR+EKL+W++ S+  KS GT  S+ GAF+V +YKGPPL+   S S
Sbjct: 108 MLNLIPGLTFILAVAFRMEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLLMAPSTS 167

Query: 61  GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
             P  LL S Q +WI+GG  LA +  M SAW I+QALIL+K+ A LI++F+  F  TILS
Sbjct: 168 NLPHELL-SQQQNWIIGGLLLAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSVTILS 226

Query: 121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
           T   L +  +P  W L   +  +AV+YS V G+ F+VG+ TWCL +TGP++V+MFKPL I
Sbjct: 227 TIVCLFMERDPGAWSLKPTVRWIAVVYSGVFGSAFQVGVSTWCLHKTGPVFVAMFKPLGI 286

Query: 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVP 240
           V +  + ++ + D   LGSL+GA +IV GFY+VMWGK+KEEK   D G+ S  SS +KVP
Sbjct: 287 VIAAAVSIICLRDTLYLGSLVGATVIVIGFYSVMWGKAKEEKVGVDDGVRSFESSSQKVP 346

Query: 241 LLQNRIEEN 249
           LLQ+  EE 
Sbjct: 347 LLQSHTEET 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497783|ref|XP_003517737.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/245 (51%), Positives = 172/245 (70%), Gaps = 6/245 (2%)

Query: 1   MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 60
           +LN+IPAFTFVLA+IFR+E+++W   SSQAK LGT  SIGGAFVV  YKGPP+    S S
Sbjct: 108 ILNVIPAFTFVLALIFRMEEVHWRYFSSQAKVLGTIVSIGGAFVVILYKGPPIFRTHS-S 166

Query: 61  GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
            +  +L  S Q +WILGG FL A++F++S W+I QA + +K+ AV +I+F+ F F+TI  
Sbjct: 167 YTSNKLQFSAQPNWILGGIFLVADSFLSSMWYIYQASVAKKYPAVTVIVFFQFLFSTIQC 226

Query: 121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
             FALI V +P++W+L  D GL  +LY A++ T  R  L TWC+ R GPL+ +MFKP+ I
Sbjct: 227 GVFALIAVRDPTEWELKFDRGLSVILYQAIVATMLRYTLTTWCVHRAGPLFCAMFKPVGI 286

Query: 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVP 240
           +F++ M  + +G+ F LGSLIGA+IIV GFYAV+WG S+EE   E+     + SS    P
Sbjct: 287 IFTVSMSAIFLGENFGLGSLIGAVIIVIGFYAVLWGNSREENKIEN-----LESSSHNAP 341

Query: 241 LLQNR 245
           LLQ+R
Sbjct: 342 LLQDR 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/252 (46%), Positives = 173/252 (68%), Gaps = 7/252 (2%)

Query: 1   MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 60
           MLNL+P  TF+LAIIFR+E ++W++ S+ AKS+GT  SIGGAF+VT YKGP L+  L   
Sbjct: 105 MLNLVPGLTFILAIIFRMENVDWKSYSTLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSV 164

Query: 61  GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
                 +L  Q +W+LGG  +A +    S+W I+QALIL+K++A LI++F+ FFF+TILS
Sbjct: 165 TKSSHQVLLQQSNWVLGGLLMAVDCATASSWLIVQALILKKYSAKLIVVFFHFFFSTILS 224

Query: 121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
           +  ++++  +PS W L  +I L+AVL+S ++G  F +G+  WC+ +TGP++V++F PL I
Sbjct: 225 SIVSVVMERDPSAWSLNSNIRLIAVLFSGILGNAFEIGVTAWCVHKTGPVFVAIFAPLGI 284

Query: 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE----KTTEDCGLGSVNSSR 236
           V +    V+  GDA  LG +IGA +I  GFYAV+WGK++EE    +  E+CG     SS 
Sbjct: 285 VIAAAASVICFGDALDLGIVIGAAVIAIGFYAVIWGKAQEEIKKVEDKENCGSA---SSS 341

Query: 237 EKVPLLQNRIEE 248
           +KVP LQNR  +
Sbjct: 342 QKVPFLQNRSND 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486015|ref|XP_003613295.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355514630|gb|AES96253.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 175/246 (71%), Gaps = 3/246 (1%)

Query: 1   MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 60
           MLNLIPAFTFVLA+IFR+E++ W + SSQAK++GT  S+ GAFVV  YKGPP++ ++  S
Sbjct: 356 MLNLIPAFTFVLALIFRMERIYWRHFSSQAKAIGTIVSMAGAFVVILYKGPPIL-KIHSS 414

Query: 61  GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
            S   L  SP L+WILGGF  A ++ ++S W+I Q  + +K+ AV++I+F+   F TI +
Sbjct: 415 ISYNTLQFSPNLNWILGGFLCAGDSLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQT 474

Query: 121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
             +ALIVV +PS W+L LD+GL+ +LY AV   G R  L TW + R GPL+ +MFKP+ I
Sbjct: 475 GVYALIVVRDPSAWELKLDMGLIVILYQAVAAIGIRYFLQTWSVQRAGPLFCAMFKPIGI 534

Query: 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVP 240
           +F++ +  + +GD F LGSLIGA+IIV GFYAV WGK+ EEK  +  G+ ++ +    VP
Sbjct: 535 IFTVFLGSIFLGDDFYLGSLIGAVIIVVGFYAVQWGKASEEKVEK--GIENLETQSNVVP 592

Query: 241 LLQNRI 246
           LLQN++
Sbjct: 593 LLQNKV 598

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.883	0.599	0.418	1.4e-41
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.955	0.670	0.358	6.1e-39
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.855	0.613	0.371	7.8e-39
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.959	0.645	0.353	2.1e-38
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.947	0.655	0.366	4.3e-38
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.947	0.668	0.372	1.9e-37
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.939	0.653	0.355	8e-37
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.879	0.591	0.343	3.5e-36
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.907	0.666	0.357	4.4e-36
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.883	0.589	0.324	6.5e-35

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 95/227 (41%), Positives = 134/227 (59%)

Query:     3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXX 62
             NL PAFTF+LA++FR+E ++++  SS AK LGT  SIGGAF+VT Y GP +I +      
Sbjct:   110 NLTPAFTFLLAVVFRMESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS 169

Query:    63 XXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRKFAAVL-IIMFYLF--FFNTIL 119
                        WILG  FLA E F    W+I+Q  I+R++ A   ++ FY     F T L
Sbjct:   170 LRSQSTNPN--WILGAGFLAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTAL 227

Query:   120 STAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLA 179
              T F     ++   WK+  +I LV+++ S + G+     + TW L   GPL+V+MFKPL+
Sbjct:   228 VTLFT--EGNDLGAWKIKPNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLS 285

Query:   180 IVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTED 226
             I  ++ M V+ + D+  +GSLIGA +I  GFY VMWGK+KE    ED
Sbjct:   286 IAIAVAMGVIFLRDSLYIGSLIGATVITIGFYTVMWGKAKEVALVED 332

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 90/251 (35%), Positives = 139/251 (55%)

Query:     3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP----PLIGEXX 58
             N+ PA TF+LAIIFR+EK +++ KSS AK +GT  S+ GA VV  Y GP    P      
Sbjct:   111 NINPAITFILAIIFRMEKASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFP 170

Query:    59 XXXXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTI 118
                            WI+GG  LA +  +    FILQA I++ + A   + F+ F   +I
Sbjct:   171 QLRQLLLPLSSSNSDWIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASI 230

Query:   119 LSTAFALIVV-SEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP 177
             L++   ++   + PS W +  DI LV ++   +   G+   +  W +   GP+Y+++F+P
Sbjct:   231 LTSLIGIVAEKNNPSIWIIHFDITLVCIVVGGIFNPGY-YAIHLWAVRNKGPVYLAIFRP 289

Query:   178 LAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSRE 237
             L+I+ +++M  + +GD+F LGSL+G ++I  GFY VMWGK+KE KT          S  E
Sbjct:   290 LSILIAVIMGAIFLGDSFYLGSLVGGILISLGFYTVMWGKAKEGKT-------QFLSLSE 342

Query:   238 KVPLLQNRIEE 248
             + PLL   I++
Sbjct:   343 ETPLLDENIDD 353

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 82/221 (37%), Positives = 126/221 (57%)

Query:     3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXX 62
             NL PAFTF+LAI FR+E++   + ++QAK +GT  SI GA V+  YKGP L+        
Sbjct:   115 NLTPAFTFILAIFFRMEQVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLL-------- 166

Query:    63 XXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTA 122
                        WI+GG  L  +  + S WFILQ  I+  +   + ++F      T++S  
Sbjct:   167 VAASFTSFESSWIIGGLLLGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGT 226

Query:   123 FALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVF 182
               L+V  + + W+L     L +V+YS +  T     + TW L   GP+Y+S+FKPL+I  
Sbjct:   227 VCLLVEKDLNSWQLKPGFSLASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAI 286

Query:   183 SIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT 223
             ++ M  + +GD   LGS+IG++I+  GFY V+WGK++E+ T
Sbjct:   287 AVAMAAIFLGDTLHLGSVIGSVILSFGFYTVIWGKAREDST 327

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 89/252 (35%), Positives = 139/252 (55%)

Query:     3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXX-- 60
             NL PAFTF LA+IFR+E++   + ++QAK +GT  SI GA VV  YKGP ++ +      
Sbjct:   119 NLTPAFTFTLAVIFRMEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPP 178

Query:    61 ---XXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNT 117
                             WI+GG  LA +  + S W+ILQ  ++  +   + ++F      T
Sbjct:   179 SPTISLYQHLTSFDSSWIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCAT 238

Query:   118 ILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP 177
             ++S    L    + + + L   + L +V+YS  + + F   + TW L   GP+Y+S+FKP
Sbjct:   239 LISAPVCLFAEKDLNSFILKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKP 298

Query:   178 LAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSRE 237
             L+IV ++ M V+ +GDA  LGS+IG++I+  GFY V+WGK++E+      G        E
Sbjct:   299 LSIVIAVAMGVMFLGDALYLGSVIGSLILSLGFYTVIWGKAREDSIKTVAGT-------E 351

Query:   238 KVPLLQNR-IEE 248
             + PLL +  IEE
Sbjct:   352 QSPLLPSHTIEE 363

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 91/248 (36%), Positives = 139/248 (56%)

Query:     3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX---- 58
             N+ PA TF+LAIIFR+EK++++ +SS AK +GT  S+ GA VV FY GP +         
Sbjct:   115 NITPALTFILAIIFRMEKVSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYV 174

Query:    59 XXXXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNT 117
                            W++GG  L  +    S  FILQA I+  + A   + F Y    + 
Sbjct:   175 NFRQFSPPLSSSNSDWLIGGALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSI 234

Query:   118 ILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP 177
             + ST   ++  + PS W +  DI L+ ++  A++ + + V + +W +   GPLY+++FKP
Sbjct:   235 VTSTIGLVVEKNNPSVWIIHFDITLITIVTMAIVTSVYYV-IHSWTVRHKGPLYLAIFKP 293

Query:   178 LAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSRE 237
             L+I+ ++VM  + + D+  LG LIG ++I  GFYAVMWGK+ EEK  +        S +E
Sbjct:   294 LSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK--DQLSF----SEKE 347

Query:   238 KVPLLQNR 245
             K PLL NR
Sbjct:   348 KTPLLLNR 355

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 92/247 (37%), Positives = 139/247 (56%)

Query:     3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX---- 58
             N+ PA TF+LAIIFR+EK++++ +SS AK +GT  S+ GA VV  Y GP +         
Sbjct:   112 NITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYI 171

Query:    59 XXXXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTI 118
                            W++GG  L       S  FILQA I+  + A   + F      +I
Sbjct:   172 NFRQLSPPLSSSNSDWLIGGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSI 231

Query:   119 LSTAFALIVV-SEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP 177
             +++   L+V  + PS W +  DI L+ ++  A+I + + V + +W +   GPLY+++FKP
Sbjct:   232 VTSMIGLVVEKNNPSVWIIRFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYLAIFKP 290

Query:   178 LAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSRE 237
             L+I+ ++VM  V + D+  LG LIG ++I  GFYAVMWGK+ EEK   D  L  + S +E
Sbjct:   291 LSILIAVVMSAVFLNDSLYLGCLIGGLLITLGFYAVMWGKANEEK---DQLL--LVSGKE 345

Query:   238 KVPLLQN 244
             + PLL N
Sbjct:   346 RTPLLLN 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 87/245 (35%), Positives = 138/245 (56%)

Query:     3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX---- 58
             N++PA TF+LA+IFR+EK++++ +SS AK +GT  S+ GAFVV FY GP +         
Sbjct:   112 NIVPALTFILAVIFRMEKVSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYL 171

Query:    59 XXXXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNT 117
                            W++GG  L  +    S  FILQ  I+R++  A  + + Y+   + 
Sbjct:   172 NFRQLSPPLSSSKSDWLIGGAILTIQGIFVSVSFILQTHIMREYPEAFTVSILYILCISI 231

Query:   118 ILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP 177
             + S    ++  + PS W +  DI L  ++ + +I + + V + +W +    PLY+++FKP
Sbjct:   232 VTSMIGLVVEKNNPSIWIIHFDITLFTIVTTGIITSVYYV-IHSWAIRHKRPLYLAIFKP 290

Query:   178 LAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSRE 237
             L+I+ ++VM  + + D+  LG LIG ++I  GFY VMWGK+ EEK      L S  S +E
Sbjct:   291 LSILIAVVMGTIFLNDSLYLGCLIGGILITLGFYVVMWGKANEEKNK----LLSF-SGKE 345

Query:   238 KVPLL 242
             K PLL
Sbjct:   346 KTPLL 350

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 76/221 (34%), Positives = 129/221 (58%)

Query:     3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL--IGEXXXX 60
             N +PA TF+LA+IFRLE +N+    S AK +GT  ++GGA ++T YKGP +  +      
Sbjct:   109 NALPAVTFILALIFRLETVNFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNS 168

Query:    61 XXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILS 120
                          W+LG   +       +A+FILQ+  L+ + A L ++  +    TIL+
Sbjct:   169 FHGGSSSTPTGQHWVLGTIAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILN 228

Query:   121 TAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAI 180
                +LI+V +PS WK+G+D G +A +YS V+ +G    + +  + + GP++ + F P+ +
Sbjct:   229 AIASLIMVRDPSAWKIGMDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCM 288

Query:   181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE 221
             + +  +  +++ +   LGS+IGA+ IV G Y+V+WGKSK+E
Sbjct:   289 IITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGKSKDE 329

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 88/246 (35%), Positives = 141/246 (57%)

Query:     1 MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXX 60
             M N+ PAFTF+LA++FR+E ++   KSS AK LGT  SI GA VVT Y GP L+      
Sbjct:   109 MSNVNPAFTFILAVVFRMENISLGKKSSVAKVLGTILSIIGALVVTLYHGPMLMSSHSD- 167

Query:    61 XXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTIL 119
                          WI+GG  LA +  + S  +++ A  + ++ +AV++ + +      + 
Sbjct:   168 -------------WIIGGGLLALQYILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVC 214

Query:   120 STAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLA 179
             +    L     P  W +  DI L+ V+ + ++ +G+ V + TW +S  GP+Y+SMFKPL+
Sbjct:   215 AFVSLLAEKDNPKAWVIRFDITLITVVATGILNSGYYV-IHTWAVSHKGPVYLSMFKPLS 273

Query:   180 IVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSS-REK 238
             I+ + V   + +G++  LGS++G ++I  GFY V+WGK+KE+K   D  +G++ SS    
Sbjct:   274 ILIAAVSTFIFLGESLYLGSVMGGILISIGFYMVLWGKAKEDKV--DI-IGAIESSPSHN 330

Query:   239 VPLLQN 244
              PLL N
Sbjct:   331 APLLDN 336

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 73/225 (32%), Positives = 129/225 (57%)

Query:     2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL-----IGE 56
             +N +PA TF++A+IFR+E +N +   S AK +GT  ++GGA V+T YKGP +        
Sbjct:   108 VNALPAITFIMAVIFRIETVNLKKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHS 167

Query:    57 XXXXXXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFN 116
                              W+ G   +       + +FILQ+  L+K+ A L ++ ++    
Sbjct:   168 SLHGGSSGTSSETTDQNWVTGTLAVMGSITTWAGFFILQSFTLKKYPAELSLVMWICAMG 227

Query:   117 TILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFK 176
             T+L+T  +LI+V + S WK+G+D G +A +YS V+ +G    + +  +   GP++ + F 
Sbjct:   228 TVLNTIASLIMVRDVSAWKVGMDSGTLAAVYSGVVCSGMAYYIQSIVIRERGPVFTTSFS 287

Query:   177 PLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE 221
             P+ ++ +  + V+++ +   LGS+IGA+ IV G Y+V+WGK+K+E
Sbjct:   288 PMCMIITAFLGVLVLAEKIHLGSIIGAIFIVFGLYSVVWGKAKDE 332

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	9e-46

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  155 bits (394), Expect = 9e-46
 Identities = 101/252 (40%), Positives = 150/252 (59%), Gaps = 19/252 (7%)

Query: 3   NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS 62
           N+ PA TF+LAIIFR+EK++++ +SS AK +GT  S+ GA VV FY GP     +  + S
Sbjct: 112 NITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGP----RVFVASS 167

Query: 63  PRRL---LLSPQLS-----WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF 114
           P  L    LSP LS     W++GG  L  +    S  FILQA I+ ++ A   + F    
Sbjct: 168 PPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTV 227

Query: 115 FNTILSTAFALIV-VSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVS 173
             +I+++   L+V  + PS W +  DI L+ ++  A+I + + V + +W +   GPLY++
Sbjct: 228 CVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYLA 286

Query: 174 MFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVN 233
           +FKPL+I+ ++VM  + + D+  LG LIG ++I  GFYAVMWGK+ EEK      L S  
Sbjct: 287 IFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQ----LLSF- 341

Query: 234 SSREKVPLLQNR 245
           S +EK PLL N 
Sbjct: 342 SGKEKTPLLLNG 353

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
PLN00411	358	nodulin MtN21 family protein; Provisional	99.98
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.94
PRK11689	295	aromatic amino acid exporter; Provisional	99.93
PRK11272	292	putative DMT superfamily transporter inner membran	99.92
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.91
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.9
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.9
PRK15430	296	putative chloramphenical resistance permease RarD;	99.88
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.86
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.83
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.82
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.8
KOG2765	416	consensus Predicted membrane protein [Function unk	99.74
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.66
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.64
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.62
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.62
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.55
COG2510	140	Predicted membrane protein [Function unknown]	99.55
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.53
COG2962	293	RarD Predicted permeases [General function predict	99.46
PRK15430	296	putative chloramphenical resistance permease RarD;	99.26
KOG2766	336	consensus Predicted membrane protein [Function unk	99.24
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.19
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.19
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.18
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.18
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.11
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.99
PLN00411	358	nodulin MtN21 family protein; Provisional	98.97
KOG1580	337	consensus UDP-galactose transporter related protei	98.97
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.94
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.91
PRK11272	292	putative DMT superfamily transporter inner membran	98.89
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.85
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.8
PRK11689	295	aromatic amino acid exporter; Provisional	98.76
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.75
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.75
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.71
KOG1581	327	consensus UDP-galactose transporter related protei	98.6
COG2962	293	RarD Predicted permeases [General function predict	98.59
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.56
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.55
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.46
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.4
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.39
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.39
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.38
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.21
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.17
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	98.16
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.13
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.11
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.06
KOG1582	367	consensus UDP-galactose transporter related protei	97.96
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.94
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.87
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.8
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.71
COG2076	106	EmrE Membrane transporters of cations and cationic	97.66
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	97.62
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.61
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.56
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.53
PRK11431	105	multidrug efflux system protein; Provisional	97.53
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.52
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.49
PRK13499	345	rhamnose-proton symporter; Provisional	97.23
PRK13499	345	rhamnose-proton symporter; Provisional	97.15
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.03
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.01
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.71
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.41
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.21
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.74
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	95.45
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	95.43
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	94.9
KOG2765	416	consensus Predicted membrane protein [Function unk	94.77
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	94.4
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	93.98
KOG2922	335	consensus Uncharacterized conserved protein [Funct	93.26
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	93.23
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	91.58
KOG1580	337	consensus UDP-galactose transporter related protei	91.13
PRK02237	109	hypothetical protein; Provisional	90.62
KOG1443	349	consensus Predicted integral membrane protein [Fun	90.3
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	89.61
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	87.09
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	86.83
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	86.63
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	85.31
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	84.77
PRK10650	109	multidrug efflux system protein MdtI; Provisional	83.36
PRK09541	110	emrE multidrug efflux protein; Reviewed	82.44
PRK11431	105	multidrug efflux system protein; Provisional	82.42
COG2076	106	EmrE Membrane transporters of cations and cationic	81.45
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	80.04

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.98  E-value=2.8e-31  Score=240.65  Aligned_cols=238  Identities=39%  Similarity=0.707  Sum_probs=177.7

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCC----CCCCCccccCCCCcchhHH
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS----HSGSPRRLLLSPQLSWILG   77 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~G   77 (249)
                      .+++|+|+++++++++.|+++.++|.++.|++|++++++|+.++..++++.....++    +.+...........+...|
T Consensus       111 ~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG  190 (358)
T PLN00411        111 SNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIG  190 (358)
T ss_pred             HHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHH
Confidence            578999999999999645555555555559999999999999886544432110000    0000000001112234679


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhcc-CCccccccchhHHHHHHHHHHHHHHHH
Q 025732           78 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDWKLGLDIGLVAVLYSAVIGTGFR  156 (249)
Q Consensus        78 ~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~-~~~~~~~~~~~~~~~llylgv~~t~la  156 (249)
                      +++.++++++||+|++++|+..+++++....++|++.++++.+.+.++..++ +..+|....+..+..++|.+++ +.++
T Consensus       191 ~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~la  269 (358)
T PLN00411        191 GALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVY  269 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHH
Confidence            9999999999999999999998888766688889999998888877776553 2233432223345678898875 6789


Q ss_pred             HHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccccccccccCCCCCCCcc
Q 025732          157 VGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSR  236 (249)
Q Consensus       157 ~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (249)
                      |.+|+|++++.||++++++.+++|++++++|++++||++++.+++|+++|+.|+++..++++||.++++.     +-+.+
T Consensus       270 y~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~-----~~~~~  344 (358)
T PLN00411        270 YVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLL-----SFSGK  344 (358)
T ss_pred             HHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhccc-----Ccccc
Confidence            9999999999999999999999999999999999999999999999999999999999887777655443     22356


Q ss_pred             ccccccccc
Q 025732          237 EKVPLLQNR  245 (249)
Q Consensus       237 ~~~~~~~~~  245 (249)
                      |+.|.+-|.
T Consensus       345 ~~~~~~~~~  353 (358)
T PLN00411        345 EKTPLLLNG  353 (358)
T ss_pred             ccchhhhhc
Confidence            778877553

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.94  E-value=3.9e-26  Score=202.57  Aligned_cols=193  Identities=21%  Similarity=0.215  Sum_probs=154.9

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL   81 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (249)
                      .+++|+++.+++++++|||++++      +++|++++++|+.++. . + ..+               .......|++++
T Consensus        93 ~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~-~-~-~~~---------------~~~~~~~G~~l~  148 (299)
T PRK11453         93 LQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLI-E-D-SLN---------------GQHVAMLGFMLT  148 (299)
T ss_pred             HHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhc-c-c-cCC---------------CcchhHHHHHHH
Confidence            46789999999999999999999      9999999999999884 2 1 100               111224799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhch--hHHHHHHHHHHHHHHHHHHHHHhccCC---ccccccchhHHHHHHHHHHHHHHHH
Q 025732           82 AAEAFMNSAWFILQALILRKFAA--VLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLGLDIGLVAVLYSAVIGTGFR  156 (249)
Q Consensus        82 l~aa~~~a~y~v~~k~~~~~~~~--~~~~~~~~~l~g~i~l~~~al~~~~~~---~~~~~~~~~~~~~llylgv~~t~la  156 (249)
                      ++++++|+.|.++.||..++.++  ......+++..+.+.+...+...+.+.   ..+...+...|..++|+|+++|+++
T Consensus       149 l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~  228 (299)
T PRK11453        149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVG  228 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999997665432  244556777777665555544433221   1111122346899999999999999


Q ss_pred             HHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732          157 VGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  218 (249)
Q Consensus       157 ~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~  218 (249)
                      |.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|+.|+++..++++
T Consensus       229 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        229 YGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            99999999999999999999999999999999999999999999999999999999887665

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.93  E-value=3.9e-25  Score=195.86  Aligned_cols=192  Identities=15%  Similarity=0.149  Sum_probs=144.4

Q ss_pred             chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732            3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA   82 (249)
Q Consensus         3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (249)
                      +++|+++.+++++++|||++++      +++|++++++|++++. ..+.....    ++   .  .+...+...|+++.+
T Consensus        99 ~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~-~~~~~~~~----~~---~--~~~~~~~~~G~~~~l  162 (295)
T PRK11689         99 YLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVL-GGDNGLSL----AE---L--INNIASNPLSYGLAF  162 (295)
T ss_pred             HHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhhee-cCCccchh----hh---h--hhccccChHHHHHHH
Confidence            5689999999999999999999      9999999999999884 21110000    00   0  000012246999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025732           83 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTW  162 (249)
Q Consensus        83 ~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~  162 (249)
                      +++++||.|+++.||..++++ +....   ...+++.+.+.....+....++   +...|..++|.+ ++++++|.+|++
T Consensus       163 ~aa~~~A~~~v~~k~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~-~~t~~~~~l~~~  234 (295)
T PRK11689        163 IGAFIWAAYCNVTRKYARGKN-GITLF---FILTALALWIKYFLSPQPAMVF---SLPAIIKLLLAA-AAMGFGYAAWNV  234 (295)
T ss_pred             HHHHHHHHHHHHHhhccCCCC-chhHH---HHHHHHHHHHHHHHhcCccccC---CHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            999999999999999876654 34432   2333444444333322211112   124577888888 589999999999


Q ss_pred             HhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732          163 CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  218 (249)
Q Consensus       163 al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~  218 (249)
                      ++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.++
T Consensus       235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            99999999999999999999999999999999999999999999999988766443

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.92  E-value=1.9e-24  Score=191.21  Aligned_cols=187  Identities=14%  Similarity=0.138  Sum_probs=154.5

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL   81 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (249)
                      .++.|+++++++.+ +|||++++      +++|++++++|+.++. .++ ..                  .....|+++.
T Consensus       103 ~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~-~~~-~~------------------~~~~~G~l~~  155 (292)
T PRK11272        103 VATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLN-SGG-NL------------------SGNPWGAILI  155 (292)
T ss_pred             HHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHh-cCc-cc------------------ccchHHHHHH
Confidence            46799999999986 58999999      9999999999998873 111 10                  1124699999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 025732           82 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCT  161 (249)
Q Consensus        82 l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~  161 (249)
                      ++++++||.|.+..||..++.  +...+.+++.++++.+.++....+.+..  ..++...|..++|+++++|+++|.+|+
T Consensus       156 l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~  231 (292)
T PRK11272        156 LIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAISAYM  231 (292)
T ss_pred             HHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998865432  3567789999998888877665432211  112235688999999999999999999


Q ss_pred             HHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732          162 WCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSK  219 (249)
Q Consensus       162 ~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~  219 (249)
                      +++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+++++
T Consensus       232 ~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        232 YLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999988775553

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.91  E-value=1.6e-23  Score=181.27  Aligned_cols=179  Identities=20%  Similarity=0.282  Sum_probs=151.6

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL   81 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (249)
                      .++.|+++++++.+++|||++++      +++|++++++|++++. .++ +                  ......|+++.
T Consensus        80 ~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~-~~~-~------------------~~~~~~G~~~~  133 (260)
T TIGR00950        80 LYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLL-SDG-N------------------LSINPAGLLLG  133 (260)
T ss_pred             HhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhc-cCC-c------------------ccccHHHHHHH
Confidence            46899999999999999999999      9999999999999884 211 0                  11235799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 025732           82 AAEAFMNSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLC  160 (249)
Q Consensus        82 l~aa~~~a~y~v~~k~~~~~~~~-~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~  160 (249)
                      ++++++|+.|.+..|+..++.+. +...+.+++.++.+.+.++....+++. .+   +...|..+++++++++.++|.+|
T Consensus       134 l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~  209 (260)
T TIGR00950       134 LGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLW  209 (260)
T ss_pred             HHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998776652 245566888999988888876544321 22   23457789999999999999999


Q ss_pred             HHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHh
Q 025732          161 TWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGF  210 (249)
Q Consensus       161 ~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv  210 (249)
                      ++++++.++.+++.+.+++|+++++++++++||++++.+++|+++++.|+
T Consensus       210 ~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       210 NKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999986

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.90  E-value=2.7e-23  Score=184.41  Aligned_cols=193  Identities=17%  Similarity=0.166  Sum_probs=148.6

Q ss_pred             chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732            3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA   82 (249)
Q Consensus         3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (249)
                      +++|+++++++.+++|||++++      +++|++++++|+.+..   ..+                  ......|+++.+
T Consensus        99 ~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~---~~~------------------~~~~~~G~~~~l  151 (302)
T TIGR00817        99 AMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS---DTE------------------LSFNWAGFLSAM  151 (302)
T ss_pred             hcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc---CCc------------------ccccHHHHHHHH
Confidence            5789999999999999999999      9999999999997652   111                  012256999999


Q ss_pred             HHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHhccCC-c--cccc-----cchhHHHHHHHHHHHH
Q 025732           83 AEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEP-S--DWKL-----GLDIGLVAVLYSAVIG  152 (249)
Q Consensus        83 ~aa~~~a~y~v~~k~~~~--~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~-~--~~~~-----~~~~~~~~llylgv~~  152 (249)
                      +++++|++|+++.||..+  +++ +...+.|++..+++.++|++...+... .  .+..     .....+...++.+..+
T Consensus       152 ~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (302)
T TIGR00817       152 ISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGF  230 (302)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Confidence            999999999999999877  565 689999999999999999877654311 0  1100     0001121222333323


Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccc
Q 025732          153 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT  223 (249)
Q Consensus       153 t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~  223 (249)
                      ....+.++++++++.+|++++++.+++|++++++|++++||++++.+++|+++++.|+++..+.|+||++.
T Consensus       231 ~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~  301 (302)
T TIGR00817       231 FHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP  301 (302)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            33333466689999999999999999999999999999999999999999999999999988766555443

specificities overlap.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.90  E-value=1.3e-22  Score=179.65  Aligned_cols=187  Identities=11%  Similarity=0.057  Sum_probs=142.6

Q ss_pred             chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732            3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA   82 (249)
Q Consensus         3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (249)
                      .++|+++++++    +||+.        +..++.++++|+.++. ..+.+                 .+.....|+++.+
T Consensus       105 ~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~-~~~~~-----------------~~~~~~~G~ll~l  154 (293)
T PRK10532        105 FTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLL-PLGQD-----------------VSHVDLTGAALAL  154 (293)
T ss_pred             HHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheee-ecCCC-----------------cccCChHHHHHHH
Confidence            46799988775    23332        3345678899998874 21111                 0112346999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025732           83 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTW  162 (249)
Q Consensus        83 ~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~  162 (249)
                      +++++|+.|.+..||..++++ +... .++.+++++.+.++....+. ...+   +...|..++|+|+++|+++|.+|++
T Consensus       155 ~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~---~~~~~~~~l~lgv~~t~~~~~l~~~  228 (293)
T PRK10532        155 GAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG-EALW---HWSILPLGLAVAILSTALPYSLEMI  228 (293)
T ss_pred             HHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC-cccC---CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999877765 3444 56777788777777655332 1111   1234666789999999999999999


Q ss_pred             HhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccccc
Q 025732          163 CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTE  225 (249)
Q Consensus       163 al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~~~  225 (249)
                      ++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|++...+..+||.|-||
T Consensus       229 ~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~  291 (293)
T PRK10532        229 ALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKE  291 (293)
T ss_pred             HHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999888776665555443

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.88  E-value=4.4e-22  Score=176.46  Aligned_cols=180  Identities=16%  Similarity=0.134  Sum_probs=132.9

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL   81 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (249)
                      ..++|+++++++++++|||++++      +++|++++++|++++. .  +.                 ++.     ..+.
T Consensus       106 ~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~-~--~~-----------------~~~-----~~~~  154 (296)
T PRK15430        106 YFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQL-W--TF-----------------GSL-----PIIA  154 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHH-H--Hc-----------------CCc-----cHHH
Confidence            35789999999999999999999      9999999999999884 2  11                 001     1457


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 025732           82 AAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLC  160 (249)
Q Consensus        82 l~aa~~~a~y~v~~k~~~~~~-~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~  160 (249)
                      ++++++||.|++..||..++. ......+.|++.++.....+..   +.+..++...+...+..+++.|+ .+.++|.+|
T Consensus       155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~  230 (296)
T PRK15430        155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCF  230 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHH-HHHHHHHHH
Confidence            889999999999988864321 1224445566666654433221   11111121111112333444454 788999999


Q ss_pred             HHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          161 TWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       161 ~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      ++++++.++++++.+.|++|+++++++++++||++++.+++|+++|+.|+.+...+
T Consensus       231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998887776544

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.86  E-value=9.8e-22  Score=172.89  Aligned_cols=182  Identities=18%  Similarity=0.137  Sum_probs=137.6

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL   81 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (249)
                      .++.|+++++++++++|||++.+      +++|+++++.|++++..   ++..                . ....|+.+.
T Consensus        96 ~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~---~~~~----------------~-~~~~g~~~~  149 (281)
T TIGR03340        96 ARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL---SRFA----------------Q-HRRKAYAWA  149 (281)
T ss_pred             HhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc---cccc----------------c-cchhHHHHH
Confidence            35789999999999999999999      99999999999998842   1100                0 123578889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHH
Q 025732           82 AAEAFMNSAWFILQALILRKFAA---VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVG  158 (249)
Q Consensus        82 l~aa~~~a~y~v~~k~~~~~~~~---~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~  158 (249)
                      ++++++|+.|+++.|+..++.++   ....+.+++..+++.+.+.....+..  .+. .....+..+++.+.+++.++|.
T Consensus       150 l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~l~~~  226 (281)
T TIGR03340       150 LAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQILPSATLGGLMIGGAYA  226 (281)
T ss_pred             HHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998876444331   12233344433323322222221211  111 1123466778999999999999


Q ss_pred             HHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhh
Q 025732          159 LCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYA  212 (249)
Q Consensus       159 l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l  212 (249)
                      +|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++
T Consensus       227 l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       227 LVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.83  E-value=5.7e-20  Score=166.66  Aligned_cols=187  Identities=17%  Similarity=0.214  Sum_probs=149.5

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL   81 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (249)
                      .++.|+++++++++++|||++++      +++++++++.|+.+.+.   .+.                 + ....|++++
T Consensus       147 ka~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~---~~~-----------------~-~~~~G~~~~  199 (350)
T PTZ00343        147 KAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV---KEL-----------------H-FTWLAFWCA  199 (350)
T ss_pred             HHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec---ccc-----------------h-hHHHHHHHH
Confidence            35799999999999999999999      99999999999998741   111                 1 135799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc------hhHHHHHHHHHHHHHHHHHHHHHhccC--Cccccc---c-chhHHHHHHHHH
Q 025732           82 AAEAFMNSAWFILQALILRKFA------AVLIIMFYLFFFNTILSTAFALIVVSE--PSDWKL---G-LDIGLVAVLYSA  149 (249)
Q Consensus        82 l~aa~~~a~y~v~~k~~~~~~~------~~~~~~~~~~l~g~i~l~~~al~~~~~--~~~~~~---~-~~~~~~~llylg  149 (249)
                      ++++++|+.|+++.||..++.+      ++.....+++..+++.++|+....+..  ...|..   . ....+..+++. 
T Consensus       200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~-  278 (350)
T PTZ00343        200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK-  278 (350)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-
Confidence            9999999999999999876532      234566667889999999987755431  111100   0 01123445564 


Q ss_pred             HHHHHHHHHHHHH----HhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          150 VIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       150 v~~t~la~~l~~~----al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      ++.++++|.+|++    ++++++|.+.++..++.|++++++|++++||++++.+++|+++++.|+++.+.-
T Consensus       279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            5678999999995    999999999999999999999999999999999999999999999999887654

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.82  E-value=2.5e-19  Score=160.41  Aligned_cols=200  Identities=18%  Similarity=0.244  Sum_probs=156.5

Q ss_pred             chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732            3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA   82 (249)
Q Consensus         3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (249)
                      .+.-.|+++++++++|+|.++.      |++|+++++.|+++++..+.  ...     +     .++++.+...||++++
T Consensus       113 ~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~--~~~-----~-----~~~~~~~~i~GDll~l  174 (334)
T PF06027_consen  113 CTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDV--LSG-----S-----DSSSGSNPILGDLLAL  174 (334)
T ss_pred             hhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecc--ccc-----c-----cCCCCCccchhHHHHH
Confidence            3556789999999999999999      99999999999998863321  110     0     0122345689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccC-CccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 025732           83 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCT  161 (249)
Q Consensus        83 ~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~-~~~~~~~~~~~~~~llylgv~~t~la~~l~~  161 (249)
                      +++++||+++++.++..++.+ ......+..++|.++..+.....+.+ ....+++  ......+....++...-|.+..
T Consensus       175 ~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~--~~~~~~~v~~~~~lf~~y~l~p  251 (334)
T PF06027_consen  175 LGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT--SQVIGLLVGYALCLFLFYSLVP  251 (334)
T ss_pred             HHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC--hhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999876 57888888889998888777666643 2222222  2222333333456778888999


Q ss_pred             HHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccc
Q 025732          162 WCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT  223 (249)
Q Consensus       162 ~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~  223 (249)
                      ..++..+|+...+-.....+++++++++++|+++++..++|.++|+.|+++....+++++++
T Consensus       252 ~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~  313 (334)
T PF06027_consen  252 IVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA  313 (334)
T ss_pred             HHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence            99999999999999999999999999999999999999999999999999988765544433

Some of the sequences in this family are annotated as putative membrane proteins.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.80  E-value=1.9e-18  Score=150.43  Aligned_cols=183  Identities=20%  Similarity=0.311  Sum_probs=143.3

Q ss_pred             CchhHHHHHHHHH-HhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcc-hhHHHH
Q 025732            2 LNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS-WILGGF   79 (249)
Q Consensus         2 ~~~~Pi~~~ils~-l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~   79 (249)
                      .++.|+++.+++. ++++||++++      +++|+++++.|++++..   ++..                ... ...|+.
T Consensus       103 ~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~---~~~~----------------~~~~~~~g~~  157 (292)
T COG0697         103 IGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILL---GGGG----------------GGILSLLGLL  157 (292)
T ss_pred             HHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheec---CCCc----------------chhHHHHHHH
Confidence            4688999999996 7779999999      99999999999999852   1110                011 468999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHH
Q 025732           80 FLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVG  158 (249)
Q Consensus        80 l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~-~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~  158 (249)
                      +.++++++|+.|.+..|+.. +.+ +..... +++.  ...+......... .. . ......|..+.+.|+++++++|.
T Consensus       158 ~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~g~~~~~i~~~  230 (292)
T COG0697         158 LALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLSG-FG-A-PILSRAWLLLLYLGVFSTGLAYL  230 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhcc-cc-c-cCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998876 443 344444 4444  2222222221111 11 1 11224588899999999999999


Q ss_pred             HHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          159 LCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       159 l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      +|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++++.|+.+...+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999988876

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.74  E-value=8.8e-18  Score=148.89  Aligned_cols=198  Identities=24%  Similarity=0.290  Sum_probs=156.6

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL   81 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (249)
                      .++.-+||.+++.++..||+++.      |++++++++.|+++++..+  +-+.           ++....+...|+++.
T Consensus       192 SStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~--s~~~-----------~~~~a~~~llG~lla  252 (416)
T KOG2765|consen  192 SSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGD--SKQN-----------SDLPASRPLLGNLLA  252 (416)
T ss_pred             hhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecc--cccc-----------ccCCccchhHHHHHH
Confidence            35678999999999999999999      9999999999999996432  1111           112233458999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhHHHHH---HHHHHHHHHHHHHHHHhcc-CCccccccchhHHHHHHHHHHHHHHHHH
Q 025732           82 AAEAFMNSAWFILQALILRKFAAVLIIMF---YLFFFNTILSTAFALIVVS-EPSDWKLGLDIGLVAVLYSAVIGTGFRV  157 (249)
Q Consensus        82 l~aa~~~a~y~v~~k~~~~~~~~~~~~~~---~~~l~g~i~l~~~al~~~~-~~~~~~~~~~~~~~~llylgv~~t~la~  157 (249)
                      +++|+.||+|+++.||...+.+....+..   +..++..++++|..++.+. ..+.++.+...+...++..+.++|+++-
T Consensus       253 L~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSD  332 (416)
T KOG2765|consen  253 LLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSD  332 (416)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHH
Confidence            99999999999999997766531233322   3333445555554444332 2345666666677888899999999999


Q ss_pred             HHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732          158 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  218 (249)
Q Consensus       158 ~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~  218 (249)
                      ++|.|+.-..+|..+++-..++.+.|++.+.++-|.++++.+++|.+.|++|.++++...+
T Consensus       333 ylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  333 YLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             HHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            9999999999999999999999999999999999999999999999999999999887544

>TIGR00688 rarD rarD protein

Probab=99.66  E-value=6.2e-16  Score=134.09  Aligned_cols=150  Identities=11%  Similarity=0.085  Sum_probs=107.1

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL   81 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (249)
                      +.++|+|+++++++++|||++++      +++|+++++.|++++...++                    +.     ..+.
T Consensus       103 ~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~--------------------~~-----~~~~  151 (256)
T TIGR00688       103 YLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG--------------------SL-----PWEA  151 (256)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC--------------------Cc-----hHHH
Confidence            46799999999999999999999      99999999999988742100                    01     1357


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH---HhccCCccccccchhHHHHHHHHHHHHHHHHHH
Q 025732           82 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFAL---IVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVG  158 (249)
Q Consensus        82 l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al---~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~  158 (249)
                      ++++++|+.|.+..||..++ +. ....     .+.+.+.++..   .....+..........|..+++.|++ |.++|.
T Consensus       152 l~aa~~~a~~~i~~~~~~~~-~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~  223 (256)
T TIGR00688       152 LVLAFSFTAYGLIRKALKNT-DL-AGFC-----LETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLL  223 (256)
T ss_pred             HHHHHHHHHHHHHHhhcCCC-Cc-chHH-----HHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHH
Confidence            88999999999998886432 21 2211     11122222221   11111111111122368888888876 899999


Q ss_pred             HHHHHhccCCccchhhhhhHHHHHHHHHHHHH
Q 025732          159 LCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI  190 (249)
Q Consensus       159 l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~  190 (249)
                      +|++++++.++++++.+.|++|+++++++++.
T Consensus       224 l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       224 AFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999864

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.64  E-value=1.6e-15  Score=134.24  Aligned_cols=182  Identities=12%  Similarity=0.120  Sum_probs=135.7

Q ss_pred             hhHHHHHHHHHHhcccccccccccCCce----eeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHH
Q 025732            4 LIPAFTFVLAIIFRLEKLNWENKSSQAK----SLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGF   79 (249)
Q Consensus         4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~----~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~   79 (249)
                      +.|++.++.+.+++|||.+++      +    ++|+++.++|++++...++++            ... +...+...|.+
T Consensus        95 ~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~------------~~~-~~~~~~~~Gi~  155 (290)
T TIGR00776        95 FQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKS------------AGI-KSEFNFKKGIL  155 (290)
T ss_pred             HHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccc------------ccc-ccccchhhHHH
Confidence            677888999999999999988      8    999999999988874211100            000 00022357999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH---HHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHH
Q 025732           80 FLAAEAFMNSAWFILQALILRKFAAVLIIMFYLF---FFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR  156 (249)
Q Consensus        80 l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~---l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la  156 (249)
                      +.++++++|+.|.+..|+.  +++ +.+.++++.   +++++...+..  ...  .++.  ....|..++ .|++ ++++
T Consensus       156 ~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~~~--~~~~--~~~~~~~~~-~Gi~-~~ia  224 (290)
T TIGR00776       156 LLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--ILA--KPLK--KYAILLNIL-PGLM-WGIG  224 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH--hcc--cchH--HHHHHHHHH-HHHH-HHHH
Confidence            9999999999999998865  354 577744443   44444333221  111  1221  122344554 8887 7999


Q ss_pred             HHHHHHHhc-cCCccchhhhhhHHHHHHHHHHHHHhCCccchhhH----HHHHHHHHHhhhhcc
Q 025732          157 VGLCTWCLS-RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSL----IGAMIIVAGFYAVMW  215 (249)
Q Consensus       157 ~~l~~~al~-~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~----iG~~LIi~gv~l~~~  215 (249)
                      |.+|..+.+ +.+++.++.+.+++|+.+.+++++++||+.++.++    +|.++|+.|+.+...
T Consensus       225 ~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       225 NFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            999999999 99999999999999999999999999999999999    999999999887654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.62  E-value=9.5e-17  Score=136.76  Aligned_cols=199  Identities=18%  Similarity=0.164  Sum_probs=147.7

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL   81 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (249)
                      +.++|++|.++++.++|||.++.      ..+|..+.+.|+++++  +.+.+..     ++++..+++.-+....|....
T Consensus       130 tFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--RPpFlFG-----~~t~g~~~s~~~~~~~gt~aa  196 (346)
T KOG4510|consen  130 TFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--RPPFLFG-----DTTEGEDSSQVEYDIPGTVAA  196 (346)
T ss_pred             EecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--cCCcccC-----CCccccccccccccCCchHHH
Confidence            45789999999999999999999      9999999999999985  4443322     122211111223346788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 025732           82 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCT  161 (249)
Q Consensus        82 l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~  161 (249)
                      +.+++..|...++.|++.|+.+. +....+..+.+.+..++.....+.  -+|+. ...+|+.++.+|+++ .++..+..
T Consensus       197 i~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~ig~--~~lP~-cgkdr~l~~~lGvfg-figQIllT  271 (346)
T KOG4510|consen  197 ISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASIGA--VQLPH-CGKDRWLFVNLGVFG-FIGQILLT  271 (346)
T ss_pred             HHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhccc--eecCc-cccceEEEEEehhhh-hHHHHHHH
Confidence            89999988888888998888653 444455555565555554433221  12221 123567777889865 66778899


Q ss_pred             HHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732          162 WCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  218 (249)
Q Consensus       162 ~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~  218 (249)
                      .++++-.+..+++..+.+-++|.++.++++||.++++.++|+++|+.+...+...|.
T Consensus       272 m~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw  328 (346)
T KOG4510|consen  272 MGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW  328 (346)
T ss_pred             HHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998766554443

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.62  E-value=4e-15  Score=113.81  Aligned_cols=125  Identities=22%  Similarity=0.367  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025732           86 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLS  165 (249)
Q Consensus        86 ~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~  165 (249)
                      ++||.+.+..|+..++.+ +...+.++++.+++ ++++....+...  +...+...+..+++.+++++.+++.+|+++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            478999999999988876 69999999999998 666655544322  11122345777888999989999999999999


Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732          166 RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  214 (249)
Q Consensus       166 ~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~  214 (249)
                      +.++++++.+.+++|+++.++++++++|++++.+++|.++++.|+++..
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.55  E-value=1.5e-13  Score=122.22  Aligned_cols=200  Identities=17%  Similarity=0.231  Sum_probs=153.6

Q ss_pred             chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732            3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA   82 (249)
Q Consensus         3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (249)
                      ++.|+++++++.+++|+|.+.+      |++++++-.+|+++....+..+-+     .      ......+...|+++++
T Consensus        98 s~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~-----~------~~~~~~~~~~G~~ll~  160 (303)
T PF08449_consen   98 SSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS-----S------SNSSSFSSALGIILLL  160 (303)
T ss_pred             hhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc-----c------cccccccchhHHHHHH
Confidence            4679999999999999999999      999999999999988643211100     0      0001112234999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHH--hccCCcccc--ccchhHHHHHHHHHHHHHHHHH
Q 025732           83 AEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALI--VVSEPSDWK--LGLDIGLVAVLYSAVIGTGFRV  157 (249)
Q Consensus        83 ~aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~--~~~~~~~~~--~~~~~~~~~llylgv~~t~la~  157 (249)
                      ++.++.+...+.++|..++++ ++.+..++..+++.+..++....  .++..+.++  ...+..+..++... ++..++.
T Consensus       161 ~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~  239 (303)
T PF08449_consen  161 LSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQ  239 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHH
Confidence            999999999999999987765 45788999999998888877666  332111111  11223345555554 4566667


Q ss_pred             HHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccc
Q 025732          158 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE  220 (249)
Q Consensus       158 ~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~  220 (249)
                      ...++..++.||...++...+--+++++++++++|+++++.+++|.++++.|..+....|+|+
T Consensus       240 ~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  240 FFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            777889999999999999999999999999999999999999999999999999988877654

; GO: 0055085 transmembrane transport

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.55  E-value=1e-13  Score=105.99  Aligned_cols=134  Identities=14%  Similarity=0.115  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHH
Q 025732           78 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  157 (249)
Q Consensus        78 ~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~  157 (249)
                      .++.++++++|++..++.|--.++.+ |..-+....+...+.++.+.+..++. +.-..-+...|..+...| ++++++.
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~-~~~~~~~~k~~lflilSG-la~glsw   81 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNW-QAGGEIGPKSWLFLILSG-LAGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCce-ecccccCcceehhhhHHH-HHHHHHH
Confidence            57889999999999999877677665 57778888888877777776665531 111111345688888888 6899999


Q ss_pred             HHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732          158 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  214 (249)
Q Consensus       158 ~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~  214 (249)
                      .+|++++++..++++....-+.|+++++++++++||+++..+++|++||..|.+++.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999999999999999999987654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.53  E-value=1e-13  Score=117.48  Aligned_cols=166  Identities=11%  Similarity=0.037  Sum_probs=131.8

Q ss_pred             eeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q 025732           31 KSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF  110 (249)
Q Consensus        31 ~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~  110 (249)
                      ..+-+.+++.|+.++. ..+++                 .......|..+.+.+..||+.|.+..+|..+..+ ...-+.
T Consensus       121 d~vwvaLAvlGi~lL~-p~~~~-----------------~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a  181 (292)
T COG5006         121 DFVWVALAVLGIWLLL-PLGQS-----------------VWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVA  181 (292)
T ss_pred             hHHHHHHHHHHHHhhe-eccCC-----------------cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHH
Confidence            6667788889988873 22221                 1122368999999999999999999999875444 478889


Q ss_pred             HHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHH
Q 025732          111 YLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI  190 (249)
Q Consensus       111 ~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~  190 (249)
                      ..+++++++.+|+...... +.-+   .+.-...-+-.++++|.+.|.+=..++++.+....+....++|.++.+.|+++
T Consensus       182 ~gm~vAaviv~Pig~~~ag-~~l~---~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~  257 (292)
T COG5006         182 VGMLVAALIVLPIGAAQAG-PALF---SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF  257 (292)
T ss_pred             HHHHHHHHHHhhhhhhhcc-hhhc---ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999998775332 1111   11234556678999999999999999999999999999999999999999999


Q ss_pred             hCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732          191 VGDAFCLGSLIGAMIIVAGFYAVMWGKSK  219 (249)
Q Consensus       191 lgE~~~~~~~iG~~LIi~gv~l~~~~~~~  219 (249)
                      +||++++.|++|.++|+.+..=..+..+|
T Consensus       258 L~e~ls~~qwlaI~~ViaAsaG~~lt~~~  286 (292)
T COG5006         258 LGETLTLIQWLAIAAVIAASAGSTLTARK  286 (292)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence            99999999999999999987655554333

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.46  E-value=1.3e-12  Score=113.06  Aligned_cols=182  Identities=14%  Similarity=0.132  Sum_probs=133.4

Q ss_pred             chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732            3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA   82 (249)
Q Consensus         3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (249)
                      ...|++..+++.+++|||+++-      |+++++++.+|+....+..|.                    .     -...+
T Consensus       106 ~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~--------------------l-----pwval  154 (293)
T COG2962         106 FINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS--------------------L-----PWVAL  154 (293)
T ss_pred             HHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC--------------------C-----cHHHH
Confidence            3679999999999999999999      999999999999988643221                    1     13445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025732           83 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTW  162 (249)
Q Consensus        83 ~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~  162 (249)
                      .=+++|+.|..+-|+ . +.++ .+-...-++.-....+.+.+..+...+.........+..++..|+ .|++...+|..
T Consensus       155 ~la~sf~~Ygl~RK~-~-~v~a-~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~  230 (293)
T COG2962         155 ALALSFGLYGLLRKK-L-KVDA-LTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAA  230 (293)
T ss_pred             HHHHHHHHHHHHHHh-c-CCch-HHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHH
Confidence            568899999877443 3 2332 333333333333333333333332221011112234667777786 69999999999


Q ss_pred             HhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732          163 CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSK  219 (249)
Q Consensus       163 al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~  219 (249)
                      +-++.+-+..+...|++|..-.+++++++||+++..+++..++|-.|+++..++.-+
T Consensus       231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~  287 (293)
T COG2962         231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLY  287 (293)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998876543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.26  E-value=1.9e-10  Score=102.02  Aligned_cols=139  Identities=15%  Similarity=0.150  Sum_probs=110.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCcccc--ccchhHHHHHHHHHH
Q 025732           73 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK--LGLDIGLVAVLYSAV  150 (249)
Q Consensus        73 ~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~--~~~~~~~~~llylgv  150 (249)
                      +...|.++.++++++|+...+..|.. .+.+ |..+.+++++++.+.++++..... +..+..  ......+ .....+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICR-QWSYLKTLIQTPQKI-FMLAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHcCHHHH-HHHHHHH
Confidence            34689999999999999999998764 5665 699999999999887776654322 111110  0011122 2334666


Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732          151 IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  215 (249)
Q Consensus       151 ~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~  215 (249)
                      ++.++.+.++++++++.+++.+++..++.|++..++++++++|+++..+++|.++.+.|+.+...
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            77888999999999999999999999999999999999999999999999999999999887653

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.24  E-value=1.6e-11  Score=104.44  Aligned_cols=185  Identities=16%  Similarity=0.174  Sum_probs=137.6

Q ss_pred             HHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHHH
Q 025732            8 FTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFM   87 (249)
Q Consensus         8 ~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~   87 (249)
                      .+.+++++++|.|-++.      |+.|+++|.+|++++++.+   .     |.+     +.+++.+..+||++.++++.+
T Consensus       117 ~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sD---V-----~ag-----d~aggsnp~~GD~lvi~GATl  177 (336)
T KOG2766|consen  117 CVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSD---V-----HAG-----DRAGGSNPVKGDFLVIAGATL  177 (336)
T ss_pred             HHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEee---e-----ccc-----cccCCCCCccCcEEEEeccee
Confidence            35788999999988888      9999999999999997432   1     111     112344567999999999999


Q ss_pred             HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHH-HHHHHHHHHHHHHHHhcc
Q 025732           88 NSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYS-AVIGTGFRVGLCTWCLSR  166 (249)
Q Consensus        88 ~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llyl-gv~~t~la~~l~~~al~~  166 (249)
                      ||+.++....+.|+.+ ..+++....++|+++..+-.+...++...  ..++  |-...|+ ...+..+-|.+.-..+|.
T Consensus       178 YaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ~i~~~~~~~t--l~w~--~~i~~yl~f~L~MFllYsl~pil~k~  252 (336)
T KOG2766|consen  178 YAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQFIFERHHVST--LHWD--SAIFLYLRFALTMFLLYSLAPILIKT  252 (336)
T ss_pred             eeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhhhccceee--Eeeh--HHHHHHHHHHHHHHHHHHhhHHheec
Confidence            9999999999999986 47888889999998887763332222222  1221  2222222 344555666777777888


Q ss_pred             CCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732          167 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  218 (249)
Q Consensus       167 ~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~  218 (249)
                      .|++...+-....-.+++++  ..+|-+.+|...+..+.++.|+++...+.+
T Consensus       253 ~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~  302 (336)
T KOG2766|consen  253 NSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK  302 (336)
T ss_pred             CCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence            89988888888888999998  556888999999999999999888754433

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.19  E-value=8.5e-11  Score=104.56  Aligned_cols=189  Identities=17%  Similarity=0.212  Sum_probs=151.1

Q ss_pred             chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732            3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA   82 (249)
Q Consensus         3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (249)
                      .++|+++.+++.++.+|+.+.+      .++.++.-..|+.+-+.   ++.                 + -...|.+.+.
T Consensus       117 a~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~---~e~-----------------~-fn~~G~i~a~  169 (316)
T KOG1441|consen  117 ALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV---TEL-----------------S-FNLFGFISAM  169 (316)
T ss_pred             hhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee---ccc-----------------c-ccHHHHHHHH
Confidence            4789999999999999999999      99999999999987642   111                 1 2368999999


Q ss_pred             HHHHHHHHHHHHHHHHHH--Hhc-hhHHHHHHHHHHHHHHHH-HHHHHhccCCc------cccccchhHHHHHHHHHHHH
Q 025732           83 AEAFMNSAWFILQALILR--KFA-AVLIIMFYLFFFNTILST-AFALIVVSEPS------DWKLGLDIGLVAVLYSAVIG  152 (249)
Q Consensus        83 ~aa~~~a~y~v~~k~~~~--~~~-~~~~~~~~~~l~g~i~l~-~~al~~~~~~~------~~~~~~~~~~~~llylgv~~  152 (249)
                      .+.+..+...++.++..+  +.. +++.+..++.-.+.+.++ |+....+++..      +|..    .....++.. ++
T Consensus       170 ~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s-v~  244 (316)
T KOG1441|consen  170 ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFV----TFLILLLNS-VL  244 (316)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccch----hhHHHHHHH-HH
Confidence            999999999999999874  221 358888888888888888 77666554322      2322    234444444 44


Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccc
Q 025732          153 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT  223 (249)
Q Consensus       153 t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~  223 (249)
                      ...-....++.+.+++|..-++...+-=++.+..++++++|++++.+..|.++-+.|+++..+.|++++++
T Consensus       245 ~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~  315 (316)
T KOG1441|consen  245 AFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG  315 (316)
T ss_pred             HHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            55556778889999999999999999999999999999999999999999999999999999887766654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.19  E-value=8e-10  Score=97.20  Aligned_cols=134  Identities=11%  Similarity=0.161  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHH
Q 025732           78 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  157 (249)
Q Consensus        78 ~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~  157 (249)
                      .++.++++++||.+.+..||..++.+   ....+.+..+++.++++...... ...|+... ..+...+..+.++....+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP---DFLWWALLAHSVLLTPYGLWYLA-QVGWSRLP-ATFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHHHHHHHHHhcc-cCCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence            46788999999999999997665532   23455566666677676554211 12233222 223333444556778889


Q ss_pred             HHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          158 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       158 ~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      .++++++++.+++.++.+.+..|+++.+++++++||++++.+++|.++++.|+.+...+
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999877653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00688 rarD rarD protein

Probab=99.18  E-value=7e-10  Score=96.13  Aligned_cols=136  Identities=13%  Similarity=0.144  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCC---cccccc-chhHHHHHHHHHHH
Q 025732           76 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLG-LDIGLVAVLYSAVI  151 (249)
Q Consensus        76 ~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~---~~~~~~-~~~~~~~llylgv~  151 (249)
                      .|.++.++++++|+...++.|. ..+.+ +.++.++.++++++.+++......+..   ..++.. ....+..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            4788999999999999999887 45565 699999999999988776654432110   011111 11123445556654


Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732          152 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  214 (249)
Q Consensus       152 ~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~  214 (249)
                       .++.+.+++++++++++..+++..++.|++..++++++++|+++..+++|.++.+.|+.+..
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence             67889999999999999999999999999999999999999999999999999999988664

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.18  E-value=8.9e-10  Score=86.15  Aligned_cols=123  Identities=13%  Similarity=0.146  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHH
Q 025732           76 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF  155 (249)
Q Consensus        76 ~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~l  155 (249)
                      .|.++.+.+.++-+...++.|+-.++.++ ...... .    + ......  . +           ....+++|+++.++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~~--~-~-----------p~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLAF--G-L-----------ALRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHHH--h-c-----------cHHHHHHHHHHHHH
Confidence            36778888888888899999987777543 221111 0    0 000000  0 1           11245889999999


Q ss_pred             HHHHHHHHhccCCccchhhhhhHHHHHHHHHHHH--HhCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732          156 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVV--IVGDAFCLGSLIGAMIIVAGFYAVMWGKSK  219 (249)
Q Consensus       156 a~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l--~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~  219 (249)
                      +|.+|.+++++.+++.+..+..+.++...+.++.  ++||++++.+++|.++|++|++++..+++|
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999999999888888885  899999999999999999999998765443

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.11  E-value=3.6e-09  Score=84.24  Aligned_cols=137  Identities=15%  Similarity=0.218  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh------chhHHHHHHHHHHHHHHHHHHHHHhccCC-cc-c-ccc------chhH
Q 025732           77 GGFFLAAEAFMNSAWFILQALILRKF------AAVLIIMFYLFFFNTILSTAFALIVVSEP-SD-W-KLG------LDIG  141 (249)
Q Consensus        77 G~~l~l~aa~~~a~y~v~~k~~~~~~------~~~~~~~~~~~l~g~i~l~~~al~~~~~~-~~-~-~~~------~~~~  141 (249)
                      |.++++.+.++.+++.++.|+..++.      -++.....+....+.+.+++.++..|... .. + ...      ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            67899999999999999999987662      25788999999999999999988876532 11 1 010      1234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732          142 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  214 (249)
Q Consensus       142 ~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~  214 (249)
                      +..++..|++ ..+-....++.+++++|...++...+--+...+++++++||++++.+++|.++.+.|+++.+
T Consensus        81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            5566666654 45667888889999999999999999999999999999999999999999999999987654

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.99  E-value=9.6e-09  Score=88.84  Aligned_cols=191  Identities=17%  Similarity=0.208  Sum_probs=127.4

Q ss_pred             hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732            4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA   83 (249)
Q Consensus         4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~   83 (249)
                      +-.++|++++.+++|+|++.+      ||.++++-++|+.++...  + .... +.+++.+........+...|.++.+.
T Consensus        52 ~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~lv~~~--~-~~~~-~~~~~~~~~~~~~~~~~~~G~~~vl~  121 (244)
T PF04142_consen   52 SKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVLVQLS--S-SQSS-DNSSSSSVHHDASNQNPLLGLLAVLA  121 (244)
T ss_pred             hHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHheeecC--C-cccc-ccccccccccccccchhHhHHHHHHH
Confidence            456889999999999999999      999999999999987421  1 1100 00000000011123345789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHHhccC-CccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 025732           84 EAFMNSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCT  161 (249)
Q Consensus        84 aa~~~a~y~v~~k~~~~~~~~-~~~~~~~~~l~g~i~l~~~al~~~~~-~~~~~~~~~~~~~~llylgv~~t~la~~l~~  161 (249)
                      ++++=++..++.+|..|+.+. ....+.+..++|.++.++.....+.+ ..+-.+  -..|-...+.-++...++=.+..
T Consensus       122 ~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~--f~G~~~~~~~~i~~~a~gGllva  199 (244)
T PF04142_consen  122 AAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGF--FHGYSWWVWIVIFLQAIGGLLVA  199 (244)
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCc--hhhcchHHHHHHHHHHHhhHHHH
Confidence            999999999999998887542 34455555666666665554333221 111111  01111122333344444446677


Q ss_pred             HHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHH
Q 025732          162 WCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII  206 (249)
Q Consensus       162 ~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LI  206 (249)
                      ..+|+.+...=+....+.-+++.+.+++++|.+++....+|..++
T Consensus       200 ~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  200 FVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            788899988888888899999999999999999999999998753

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.97  E-value=2e-08  Score=91.53  Aligned_cols=139  Identities=9%  Similarity=0.070  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHH
Q 025732           76 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF  155 (249)
Q Consensus        76 ~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~l  155 (249)
                      .-.+.+++.-++|+.+.++.|...+..-++....++.+.++++++++++...+++. .++......|..+..+|+++ .+
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~~   90 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-SM   90 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-HH
Confidence            34667788899999999999998876445789999999999999998877654211 11111123456666678777 56


Q ss_pred             HHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHH------hCCccchhhHHHHHHHHHHhhhhccc
Q 025732          156 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI------VGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       156 a~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~------lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      .+.+++++++.++++.++++.++.|++..++++++      ++|++++.+++|.++-+.|+.+....
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            67789999999999999999999999999999999      69999999999999999998876643

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.97  E-value=3.4e-09  Score=89.46  Aligned_cols=192  Identities=16%  Similarity=0.214  Sum_probs=143.7

Q ss_pred             hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732            4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA   83 (249)
Q Consensus         4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~   83 (249)
                      +-|+=+++++.++.+++..++      +...++..++|+.+. .++.+....             ..+.....|.++.++
T Consensus       120 cKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValF-mYK~~Kv~g-------------~e~~t~g~GElLL~l  179 (337)
T KOG1580|consen  120 CKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALF-MYKENKVGG-------------AEDKTFGFGELLLIL  179 (337)
T ss_pred             CCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHh-hccccccCC-------------CcccccchHHHHHHH
Confidence            457788899999999888888      999999999999988 455332211             112335679999988


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccCCc--cccccchhHHHHHHHHHHHHHHHHHHHH
Q 025732           84 EAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPS--DWKLGLDIGLVAVLYSAVIGTGFRVGLC  160 (249)
Q Consensus        84 aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~~~--~~~~~~~~~~~~llylgv~~t~la~~l~  160 (249)
                      +-..=+.-...+.|....+. .....+.+..+.+.+.+..-.++.++-.+  -+....+..|+.+..+++ ++.++..+.
T Consensus       180 SL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fI  258 (337)
T KOG1580|consen  180 SLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFI  258 (337)
T ss_pred             HHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHH
Confidence            87777777777877765543 23566777777777655443333332111  111122345777777775 889999999


Q ss_pred             HHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          161 TWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       161 ~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      +.-+..-||-.-|+....--.+.++.++++++.+++..||+|.++++.++..=...
T Consensus       259 F~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~  314 (337)
T KOG1580|consen  259 FKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD  314 (337)
T ss_pred             HHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence            99999999999999999999999999999999999999999999999998765543

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.94  E-value=9.4e-09  Score=78.37  Aligned_cols=108  Identities=13%  Similarity=0.260  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHH
Q 025732          111 YLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI  190 (249)
Q Consensus       111 ~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~  190 (249)
                      +.+.++.+.+..+.....+..+.+.......+...+..|+++...++.+|++++++.++ .++....+.|+++.++++++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence            44555655555554442221111111111234455566777777899999999999995 88899999999999999999


Q ss_pred             hCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732          191 VGDAFCLGSLIGAMIIVAGFYAVMWGKSK  219 (249)
Q Consensus       191 lgE~~~~~~~iG~~LIi~gv~l~~~~~~~  219 (249)
                      ++|++++.+++|.++++.|+.++.+++.+
T Consensus        82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   82 FKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999887654

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.91  E-value=2.7e-08  Score=85.91  Aligned_cols=120  Identities=13%  Similarity=0.068  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025732           88 NSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRT  167 (249)
Q Consensus        88 ~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~  167 (249)
                      |+...+..|...++..++.....+.++.+.+.+.++....   .      ....+...+..|.++..+.+.++++++++.
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---~------~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---P------PLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---c------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444556666555544568888888888887776654321   1      123455566677788889999999999999


Q ss_pred             CccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          168 GPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       168 g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      +++.+++...++|++..++++++++|++++.+++|..+.+.|+.+...+
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~  120 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD  120 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence            9999999999999999999999999999999999999999998887643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.89  E-value=8.5e-08  Score=84.84  Aligned_cols=132  Identities=14%  Similarity=0.060  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHH
Q 025732           78 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  157 (249)
Q Consensus        78 ~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~  157 (249)
                      .+..+.-.+.|+...+..|...++.+ |..++++.+.++++.++++........     .....|......|++...+.+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHPL-----PTLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CcHHHHHHHHHHHHHHHHHHH
Confidence            45577789999999999998777665 799999999999999887755422111     112346566677877777788


Q ss_pred             HHHHHHh-ccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          158 GLCTWCL-SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       158 ~l~~~al-~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      .+++++. ++.++..+++..++.|++..+++++ +||+++..+++|.++.+.|+++...+
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            8899998 9999999999999999999999986 69999999999999999999887654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.85  E-value=1.2e-07  Score=84.22  Aligned_cols=126  Identities=12%  Similarity=0.097  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHH
Q 025732           79 FFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVG  158 (249)
Q Consensus        79 ~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~  158 (249)
                      ++.++++++|+...+..|...++.+ |..++++.+.++++.++++..  .+. .        .+..++..|+......+.
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~--~~~-~--------~~~~~~~~g~~~~~~~~~   74 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA--RPK-V--------PLNLLLGYGLTISFGQFA   74 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc--CCC-C--------chHHHHHHHHHHHHHHHH
Confidence            5678999999999999998887775 799999999998766554321  111 1        122233345544555666


Q ss_pred             HHHHHhcc-CCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          159 LCTWCLSR-TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       159 l~~~al~~-~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      +++.+.++ .++..++++.++.|++..++++++++|+++..+++|.++.+.|+.+...+
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            77788887 57789999999999999999999999999999999999999998877643

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.80  E-value=3e-07  Score=82.07  Aligned_cols=194  Identities=15%  Similarity=0.165  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHH
Q 025732            6 PAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEA   85 (249)
Q Consensus         6 Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa   85 (249)
                      -+.|++++.+++++|++++      ||.++++-+.|+.++-....   .+       +++.......+...|....+.++
T Consensus       129 I~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~---~~-------~~a~~~~~~~n~~~G~~avl~~c  192 (345)
T KOG2234|consen  129 ILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSL---SP-------TGAKSESSAQNPFLGLVAVLVAC  192 (345)
T ss_pred             HHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCC---CC-------CCccCCCcccchhhhHHHHHHHH
Confidence            4567899999999999999      99999999999998842111   11       11111223445678998888888


Q ss_pred             HHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHHhccCCcccc--c-c-chhHHHHHHHHHHHHHHHHHHHH
Q 025732           86 FMNSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVVSEPSDWK--L-G-LDIGLVAVLYSAVIGTGFRVGLC  160 (249)
Q Consensus        86 ~~~a~y~v~~k~~~~~~~~-~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~--~-~-~~~~~~~llylgv~~t~la~~l~  160 (249)
                      +.=++-.++..|..|+-.. .+.-+.-..++|.++.+...+..+.....|.  + . +...|..++..+     ++=.+-
T Consensus       193 ~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a-----~gGLlv  267 (345)
T KOG2234|consen  193 FLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNA-----VGGLLV  267 (345)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHh-----ccchhH
Confidence            8888888888888876432 2444455556666666555544442211121  0 1 112344444343     333555


Q ss_pred             HHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccc
Q 025732          161 TWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE  220 (249)
Q Consensus       161 ~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~  220 (249)
                      ...+|+.+-..=+....+..++..+.++.++|-+++...++|..+++.++.+....++++
T Consensus       268 s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  268 SLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            566777776666677778889999999999999999999999999999999998666654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.76  E-value=3.8e-07  Score=80.84  Aligned_cols=131  Identities=14%  Similarity=0.020  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHH
Q 025732           76 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF  155 (249)
Q Consensus        76 ~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~l  155 (249)
                      .+.++.++++++|+...+..|...++.+ |....++.+..++++++++.   .. + .++.   ..+..++. +.+...+
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~-~-~~~~---~~~~~~~~-~~l~~~~   73 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GF-P-RLRQ---FPKRYLLA-GGLLFVS   73 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---cc-c-cccc---ccHHHHHH-HhHHHHH
Confidence            3567889999999999999998888876 69999999999988887652   11 1 1111   11222222 3333334


Q ss_pred             HHHHHHHHh----ccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          156 RVGLCTWCL----SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       156 a~~l~~~al----~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      .+.++++++    +..++..++++.++.|++..++++++++|++++.+++|.++-+.|+.+...+
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            445555555    4567888899999999999999999999999999999999999999887754

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.75  E-value=6.6e-07  Score=81.33  Aligned_cols=125  Identities=12%  Similarity=0.084  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 025732           89 SAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTG  168 (249)
Q Consensus        89 a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~g  168 (249)
                      ..+++..|...+..|-|+.++.++++++++.+.++......+...+. .....|..++.+|++.... +...+.+++..+
T Consensus        62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~s  139 (350)
T PTZ00343         62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLFV-HFGAVISMGLGA  139 (350)
T ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence            34566777777777657999999999998876555332111111111 0123466777888766554 666779999999


Q ss_pred             ccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732          169 PLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  215 (249)
Q Consensus       169 ~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~  215 (249)
                      ++.+.+...++|++.+++++++++|+++..+++|.+++++|+.+...
T Consensus       140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            99999999999999999999999999999999999999999988753

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.75  E-value=4.4e-07  Score=80.54  Aligned_cols=120  Identities=14%  Similarity=0.134  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 025732           91 WFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPL  170 (249)
Q Consensus        91 y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~g~~  170 (249)
                      ++++.|...++.+.|...+.+++.++++...+.......+..+++   ...|..++..|++ ..+.+.+.++++++++++
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~s   92 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKIS---SALLKLLLPVAIV-HTIGHVTSNVSLSKVAVS   92 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHhccHH
Confidence            455667777776678999999999987766554211111111111   2357777778877 477789999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732          171 YVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  214 (249)
Q Consensus       171 ~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~  214 (249)
                      .+++...+.|++.+++++++++|+++..+++|.++++.|+.+..
T Consensus        93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999997653

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.71  E-value=2.2e-07  Score=70.84  Aligned_cols=66  Identities=15%  Similarity=0.138  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732          149 AVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  214 (249)
Q Consensus       149 gv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~  214 (249)
                      ++++.++++.+|.+++++.+...+....++.|+++.++|++++||++++.+++|.++|+.|+.+..
T Consensus        43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            446778899999999999999999999999999999999999999999999999999999987654

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.60  E-value=2.2e-07  Score=81.25  Aligned_cols=192  Identities=14%  Similarity=0.186  Sum_probs=138.1

Q ss_pred             HHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHH
Q 025732            9 TFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMN   88 (249)
Q Consensus         9 ~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~   88 (249)
                      ++++..+..+.|.+..      +.+...+...|+.+..+.+..+. .           ...+..+...|..++...-+.=
T Consensus       123 Vmlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~s-~-----------~~~g~~ns~~G~~Ll~~~L~fD  184 (327)
T KOG1581|consen  123 VMLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSDS-S-----------SKSGRENSPIGILLLFGYLLFD  184 (327)
T ss_pred             HHHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCCC-c-----------cccCCCCchHhHHHHHHHHHHH
Confidence            4667778888888887      99999999999987754322110 0           1112235578998888887777


Q ss_pred             HHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccCC--ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025732           89 SAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEP--SDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLS  165 (249)
Q Consensus        89 a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~~--~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~  165 (249)
                      ++-+..++++.+++. .+..+++...+++++......+..++..  -++....++.+..++..... ..++..+.++-++
T Consensus       185 gfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~-gavGQ~FI~~TI~  263 (327)
T KOG1581|consen  185 GFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTC-GAVGQLFIFYTIE  263 (327)
T ss_pred             hhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHh-hhhhhheehhhHh
Confidence            777777888777654 3578888888988887766533323211  12221222345555556654 4566677777999


Q ss_pred             cCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732          166 RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSK  219 (249)
Q Consensus       166 ~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~  219 (249)
                      +-|+..-+.++..--+++++++.+.+|.++++.|++|..+++.|+++-..-|+|
T Consensus       264 ~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  264 RFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999887664444

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.59  E-value=1.1e-06  Score=76.64  Aligned_cols=139  Identities=12%  Similarity=0.100  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCcccc-ccchhHHHHHHHHHHHHH
Q 025732           75 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK-LGLDIGLVAVLYSAVIGT  153 (249)
Q Consensus        75 ~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~-~~~~~~~~~llylgv~~t  153 (249)
                      ..|.++.+.+-+.|+.-..+.|- .++.+ +.++..+..+.+...++.+.....+..+-++ ...+..+......++ --
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-li   82 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-LI   82 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-HH
Confidence            46999999999999998877654 56665 5899999999888877766554432211111 112234555555554 45


Q ss_pred             HHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          154 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       154 ~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      .+...+|.|+..+....++|.-.|+.|++.++.|.++++|+++..|++..++-.+||..-.+.
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999999999999999999877654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.56  E-value=4.8e-06  Score=72.16  Aligned_cols=143  Identities=18%  Similarity=0.252  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHH
Q 025732           75 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG  154 (249)
Q Consensus        75 ~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~  154 (249)
                      ..+....+..++.|+......|+..++..+.........+.+.+...+.... . ....+...  ..+......+.+...
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~~~~~~~   81 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-E-PRGLRPAL--RPWLLLLLLALLGLA   81 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-h-cccccccc--cchHHHHHHHHHHHH
Confidence            5677888888899999988888776652223445555666666553222211 1 10011111  113344456777888


Q ss_pred             HHHHHHHHHhccCCccchhhhhhHHHHHHHHHHH-HHhCCccchhhHHHHHHHHHHhhhhcccccccc
Q 025732          155 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDV-VIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE  221 (249)
Q Consensus       155 la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~-l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~  221 (249)
                      ..+.+|+.++++.++..++...+..|++..++++ ++++|++++.+++|..+.+.|++++..+...+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~  149 (292)
T COG0697          82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG  149 (292)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch
Confidence            9999999999999999999999999999999997 777999999999999999999999887665443

>TIGR00803 nst UDP-galactose transporter

Probab=98.55  E-value=2.7e-07  Score=78.39  Aligned_cols=195  Identities=11%  Similarity=0.008  Sum_probs=115.2

Q ss_pred             chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhc-----------CCCCcCCCCCCCCCccccCCCC
Q 025732            3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK-----------GPPLIGELSHSGSPRRLLLSPQ   71 (249)
Q Consensus         3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~-----------g~~~~~~~~~~~~~~~~~~~~~   71 (249)
                      +..|+++++....+.++|.+..      |+++.++...|++...+.+           +......   ++.++  .....
T Consensus        12 s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~---~~~~~--~~~~~   80 (222)
T TIGR00803        12 QNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQM---VQSSA--KTLMF   80 (222)
T ss_pred             hcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeec---CCCCc--ccccc
Confidence            4568888888888888888777      9999999999887532211           1000000   00000  00011


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHHHHHHhccC-Ccccc--ccchhHHHHHHH
Q 025732           72 LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFY-LFFFNTILSTAFALIVVSE-PSDWK--LGLDIGLVAVLY  147 (249)
Q Consensus        72 ~~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~-~~l~g~i~l~~~al~~~~~-~~~~~--~~~~~~~~~lly  147 (249)
                      .+...|....+.+.++=+.-.+..++..|+.+...-...+ ..+++.+.........+.. ..++.  ...+...+    
T Consensus        81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  156 (222)
T TIGR00803        81 GNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW----  156 (222)
T ss_pred             ccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH----
Confidence            2345676666666666555566666654443221111111 1222222211111111111 11111  11111111    


Q ss_pred             HHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhh
Q 025732          148 SAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYA  212 (249)
Q Consensus       148 lgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l  212 (249)
                      .-++...++..+..+.+++.++...+....+.++++.+++++++||++++.+++|+.+++.|+++
T Consensus       157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            22234566778899999999999999999999999999999999999999999999999998764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=1.3e-06  Score=76.92  Aligned_cols=192  Identities=16%  Similarity=0.180  Sum_probs=143.2

Q ss_pred             chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732            3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA   82 (249)
Q Consensus         3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (249)
                      +.+|+++++....+++.|++.+      -+..+..-.+|....++.   +.                  .-...|..+++
T Consensus       111 n~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~---d~------------------sf~~~gY~w~~  163 (314)
T KOG1444|consen  111 NLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT---DL------------------SFNLRGYSWAL  163 (314)
T ss_pred             hchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc---cc------------------eecchhHHHHH
Confidence            5688999999999888777766      888777777777665421   11                  11245899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccC------CccccccchhHHHHHHHHHHHHHHH
Q 025732           83 AEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE------PSDWKLGLDIGLVAVLYSAVIGTGF  155 (249)
Q Consensus        83 ~aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~------~~~~~~~~~~~~~~llylgv~~t~l  155 (249)
                      ...++-+.+.+..|+..+... +....+.+..+++...+..+.++.++-      .+.|.  ....|..+...++++-++
T Consensus       164 ~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~--~~~~~~~~~lScv~gf~i  241 (314)
T KOG1444|consen  164 ANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS--DSSVLVVMLLSCVMGFGI  241 (314)
T ss_pred             HHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc--chhHHHHHHHHHHHHHHH
Confidence            999999999999998765422 236678888888888877777665531      11121  122467788888888888


Q ss_pred             HHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccccccc
Q 025732          156 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTT  224 (249)
Q Consensus       156 a~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~~  224 (249)
                      .|. -.|+.+..+++..++.....-....+...++.|+++++..++|..+-+.|-.+....+.++++.+
T Consensus       242 sy~-s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~  309 (314)
T KOG1444|consen  242 SYT-SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP  309 (314)
T ss_pred             HHH-HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence            755 55699999999999999888888899999999999999999999998887777777665554443

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.40  E-value=1.6e-06  Score=75.26  Aligned_cols=193  Identities=15%  Similarity=0.180  Sum_probs=129.7

Q ss_pred             hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732            4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA   83 (249)
Q Consensus         4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~   83 (249)
                      ..-+|+.+++.-+++++++.+      ||+|+....+|++.+...   ++..    ++++.    ....+.+.|+++.+.
T Consensus       121 aviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~---d~~~----~~~p~----~d~s~iitGdllIii  183 (372)
T KOG3912|consen  121 AVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSL---DVHL----VTDPY----TDYSSIITGDLLIII  183 (372)
T ss_pred             chhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeee---eccc----ccCCc----cccccchhhhHHHHH
Confidence            345889999999999999999      999999999999988421   1111    01110    112345889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhc----c-C----Ccc-ccccchhHHH-----HHHH
Q 025732           84 EAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVV----S-E----PSD-WKLGLDIGLV-----AVLY  147 (249)
Q Consensus        84 aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~----~-~----~~~-~~~~~~~~~~-----~lly  147 (249)
                      +-+.-|...+.-.|..+++. +|+....|.-++|.+.+..++....    . +    +.. |. .+...|.     ..++
T Consensus       184 aqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~e-D~~~~~~~~~e~p~l~  262 (372)
T KOG3912|consen  184 AQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLE-DWGDAFAALQESPSLA  262 (372)
T ss_pred             HHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchh-hHHHHHHHhcCCchhH
Confidence            99999999998888776643 5799999999999776665544321    1 1    110 11 0000111     1223


Q ss_pred             HHHHHHHHHHHHHHH----HhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732          148 SAVIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  214 (249)
Q Consensus       148 lgv~~t~la~~l~~~----al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~  214 (249)
                      +...+..++-.+++.    .-|..+++.=.+...+--.+-=+++..+..|.++..|+.|.++.+.|.++.+
T Consensus       263 val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  263 VALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444432    2344566666666667667777788888899999999999999999988875

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.39  E-value=1e-05  Score=70.11  Aligned_cols=198  Identities=16%  Similarity=0.188  Sum_probs=125.3

Q ss_pred             hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732            4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA   83 (249)
Q Consensus         4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~   83 (249)
                      -.++.++++++++.++|-+.+      |+..+++-.+|+++-++.+.++.+..++.-  ...+...+..-+..|..+...
T Consensus       100 gsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l--~~~~~~~~~~~w~iGi~lL~~  171 (330)
T KOG1583|consen  100 GSLLANMILGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRSKLSGL--DSGSAQSDFFWWLIGIALLVF  171 (330)
T ss_pred             CcHHHHHHHHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhhhhccc--ccCcccccchHHHHHHHHHHH
Confidence            357889999999999998888      999999999999887654333322100000  000011222346789888877


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccCC-ccc--------------cccchhHHHHHHH
Q 025732           84 EAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEP-SDW--------------KLGLDIGLVAVLY  147 (249)
Q Consensus        84 aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~~-~~~--------------~~~~~~~~~~lly  147 (249)
                      +-+.=|...+.+.+.-++++ ++-+..++.-+.+.-..+..    ..+. ++|              ...-+..|..++.
T Consensus       172 al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~----~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~  247 (330)
T KOG1583|consen  172 ALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFM----GDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF  247 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHh----cchHHHHHHHHhcCcceeccccCccccHHHHHHHH
Confidence            77777777777777766654 45567777666654333221    1110 111              1111123444433


Q ss_pred             HHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732          148 SAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  214 (249)
Q Consensus       148 lgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~  214 (249)
                      .. +....+.---+..-.+..+-.+++...+-=.++++++++.++.+++++.++|..+++.|-++..
T Consensus       248 n~-L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  248 NV-LTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             HH-HHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            22 2222222222334455667778888889999999999999999999999999999999966553

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.39  E-value=5.8e-06  Score=72.49  Aligned_cols=183  Identities=21%  Similarity=0.290  Sum_probs=125.0

Q ss_pred             chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732            3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA   82 (249)
Q Consensus         3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (249)
                      ++.++|+.+++.+|.-||.++.      -..-+++-..|+.+.+ ++..+                    -...|..+.+
T Consensus       118 SSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsTq--------------------f~i~Gf~lv~  170 (349)
T KOG1443|consen  118 SSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKSTQ--------------------FNIEGFFLVL  170 (349)
T ss_pred             ccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-ecccc--------------------eeehhHHHHH
Confidence            4679999999999999999888      7777777777887774 33322                    2357888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc----hhHHHHHHHHHHHHHHHHHHHHHhccCC-c----cccc-cchhHHHHHHHHHHHH
Q 025732           83 AEAFMNSAWFILQALILRKFA----AVLIIMFYLFFFNTILSTAFALIVVSEP-S----DWKL-GLDIGLVAVLYSAVIG  152 (249)
Q Consensus        83 ~aa~~~a~y~v~~k~~~~~~~----~~~~~~~~~~l~g~i~l~~~al~~~~~~-~----~~~~-~~~~~~~~llylgv~~  152 (249)
                      +++++-++-..+..+..++.|    +|++......-.-.+.++|..+.+|+.. .    .|.. .+...+..+.+.+. +
T Consensus       171 ~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~  249 (349)
T KOG1443|consen  171 AASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-G  249 (349)
T ss_pred             HHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-H
Confidence            887776665555555555432    3555555544445556667766666431 1    2221 11122333333322 2


Q ss_pred             HHHHHH---HHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhh
Q 025732          153 TGFRVG---LCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV  213 (249)
Q Consensus       153 t~la~~---l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~  213 (249)
                      ...++.   .=+..+++++....++..-.-=+...+++..+++|+++...++|..+.+.|+...
T Consensus       250 g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  250 GLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            233332   3345788899999999999999999999999999999999999999999998876

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.38  E-value=6e-06  Score=73.15  Aligned_cols=132  Identities=12%  Similarity=0.036  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHH
Q 025732           77 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR  156 (249)
Q Consensus        77 G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la  156 (249)
                      |.++.++++++|+...+..|+.. ..+. ....  ...++.+....+......+.  +.  ....+..-+..|+ .=.++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~-~~~~--~~~~g~l~~~~~~~~~~~~~--~~--~~~~~~~g~l~G~-~w~ig   72 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPY-SQTL--GTTFGALILSIAIAIFVLPE--FW--ALSIFLVGLLSGA-FWALG   72 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHH-HHHH--HHHHHHHHHHHHHHHHhCCc--cc--ccHHHHHHHHHHH-HHHhh
Confidence            57889999999999988888753 3322 2222  34556555554444333211  11  1112222222332 35677


Q ss_pred             HHHHHHHhccCCccchhhhhh-HHHHHHHHHHHHHhCCccchhh----HHHHHHHHHHhhhhcccc
Q 025732          157 VGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGS----LIGAMIIVAGFYAVMWGK  217 (249)
Q Consensus       157 ~~l~~~al~~~g~~~~s~~~~-l~Pi~a~l~~~l~lgE~~~~~~----~iG~~LIi~gv~l~~~~~  217 (249)
                      ..+|+.++++.|.+.+-.+.+ ++|+++.+++.+++||+.+..+    ++|.++++.|+++....+
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            899999999999999988888 8999999999999999999999    999999999988876554

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.21  E-value=6.7e-05  Score=66.38  Aligned_cols=128  Identities=9%  Similarity=-0.051  Sum_probs=96.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHH
Q 025732           74 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGT  153 (249)
Q Consensus        74 ~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t  153 (249)
                      ...|..++++++++|+......|...++.+ |..+.++.++++++.++++......   .+  + ...|...+..|+. .
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~---~~--~-~~~~~~~~~~g~~-~   81 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL---RF--A-KEQRLPLLFYGVS-L   81 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc---cC--C-HHHHHHHHHHHHH-H
Confidence            367899999999999999999998888876 6899999999999888766432111   11  1 1234445556654 5


Q ss_pred             HHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732          154 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  215 (249)
Q Consensus       154 ~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~  215 (249)
                      ++.+.++++++++.++..+++..+..|++..+++.    |++..  ..+..+.+.|+++...
T Consensus        82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeee
Confidence            66778899999999999999999999999988873    55544  4556667788877653

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.17  E-value=4.1e-05  Score=66.82  Aligned_cols=178  Identities=13%  Similarity=0.092  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHH
Q 025732            7 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAF   86 (249)
Q Consensus         7 i~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~   86 (249)
                      +.+.+.++++++|.-+.+++  ..-.+++++-++|+++-+..+ +.           +. ..+...+...|....+.+.+
T Consensus        84 vg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lts~~~-~~-----------~~-~~~~~~~~~kgi~~Ll~sti  148 (269)
T PF06800_consen   84 VGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILTSYQD-KK-----------SD-KSSSKSNMKKGILALLISTI  148 (269)
T ss_pred             HHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHhcccc-cc-----------cc-ccccccchhhHHHHHHHHHH
Confidence            44678889999998776610  111235555555655443211 00           00 00112345679999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHH---HHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 025732           87 MNSAWFILQALILRKFAAVLIIMFYLF---FFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWC  163 (249)
Q Consensus        87 ~~a~y~v~~k~~~~~~~~~~~~~~~~~---l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~a  163 (249)
                      .|..|.++.|..  +.+ +.....-|.   +.+++++..+   ..+.  .++   ...|..+ ..|+ .=.++..+|..+
T Consensus       149 gy~~Y~~~~~~~--~~~-~~~~~lPqaiGm~i~a~i~~~~---~~~~--~~~---k~~~~ni-l~G~-~w~ignl~~~is  215 (269)
T PF06800_consen  149 GYWIYSVIPKAF--HVS-GWSAFLPQAIGMLIGAFIFNLF---SKKP--FFE---KKSWKNI-LTGL-IWGIGNLFYLIS  215 (269)
T ss_pred             HHHHHHHHHHhc--CCC-hhHhHHHHHHHHHHHHHHHhhc---cccc--ccc---cchHHhh-HHHH-HHHHHHHHHHHh
Confidence            999999996542  232 344443332   2333222221   1111  111   1233333 2333 345677888999


Q ss_pred             hccCCccchhhhhhHHHHHHHHHHHHHhCCccchh----hHHHHHHHHHHhhh
Q 025732          164 LSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLG----SLIGAMIIVAGFYA  212 (249)
Q Consensus       164 l~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~----~~iG~~LIi~gv~l  212 (249)
                      .++.|.+.+-.+..+.++++.+.+.+++||+=+..    .++|.++|+.|.++
T Consensus       216 ~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  216 AQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999987754    66788888887654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=98.16  E-value=0.00011  Score=58.19  Aligned_cols=131  Identities=15%  Similarity=0.154  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHH
Q 025732           78 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  157 (249)
Q Consensus        78 ~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~  157 (249)
                      .++.+.+..+-+....+..++.++..+|+..+.+.+..|.+.+..+.+..++.  .++.....+|+..+ -|++ .++..
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHHH
Confidence            45677788888888888888888876679999999999999988877766542  22211122344432 4554 45556


Q ss_pred             HHHHHHhccCCccchhhhhhH-HHHHHHHHHHH----HhCCccchhhHHHHHHHHHHhhh
Q 025732          158 GLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVV----IVGDAFCLGSLIGAMIIVAGFYA  212 (249)
Q Consensus       158 ~l~~~al~~~g~~~~s~~~~l-~Pi~a~l~~~l----~lgE~~~~~~~iG~~LIi~gv~l  212 (249)
                      .+..+.+++.|++.+...... |-+.++++|.+    .-++++++..++|.++++.|+++
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            788889999999988887766 77888888886    45678999999999999999864

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.13  E-value=5.8e-06  Score=68.44  Aligned_cols=191  Identities=18%  Similarity=0.184  Sum_probs=127.8

Q ss_pred             hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732            4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA   83 (249)
Q Consensus         4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~   83 (249)
                      +...|+.+++++.+++|...-      |+++.++++.|+++++..++ +                  ..+...|..+...
T Consensus        88 CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN-~------------------~a~e~iGi~~AV~  142 (290)
T KOG4314|consen   88 CNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADN-E------------------HADEIIGIACAVG  142 (290)
T ss_pred             hhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccc-h------------------hhhhhhhHHHHHH
Confidence            456789999999999999888      99999999999999853211 1                  1234789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH----HHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHH
Q 025732           84 EAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTIL----STAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGL  159 (249)
Q Consensus        84 aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~----l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l  159 (249)
                      +++.-|+|.+..|+...+..- =....+....|..=    .+|...+.....++|+.-...+|..+.-.+.....+ ..+
T Consensus       143 SA~~aAlYKV~FK~~iGnAn~-Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~lAF-N~~  220 (290)
T KOG4314|consen  143 SAFMAALYKVLFKMFIGNANF-GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSLAF-NFL  220 (290)
T ss_pred             HHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHHHH-hhh
Confidence            999999999999987654220 11111222222111    111111111122334311123466655444443333 345


Q ss_pred             HHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccc
Q 025732          160 CTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE  221 (249)
Q Consensus       160 ~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~  221 (249)
                      .+.++....|-..|+-.....+--...+.++-+-.++...+.|-.+|+.|.++...+..+.+
T Consensus       221 iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~~e  282 (290)
T KOG4314|consen  221 INFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDKDE  282 (290)
T ss_pred             eeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccchhh
Confidence            56688888899999988888888888999887777889999999999999988877655443

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=4.9e-06  Score=72.01  Aligned_cols=195  Identities=14%  Similarity=0.081  Sum_probs=134.8

Q ss_pred             hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732            4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA   83 (249)
Q Consensus         4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~   83 (249)
                      +.-+|+.++++.++|+|-+..      -..     .+|++++.++-|  .+.+           +..+.-...|.++...
T Consensus       137 LttvFtVlLtyvllkqkTs~~------~~~-----~C~lIi~GF~lG--vdqE-----------~~~~~ls~~GvifGVl  192 (347)
T KOG1442|consen  137 LTTVFTVLLTYVLLKQKTSFF------ALG-----CCLLIILGFGLG--VDQE-----------GSTGTLSWIGVIFGVL  192 (347)
T ss_pred             hhhhHHHHhHHhhcccccccc------cce-----eehhheehheec--cccc-----------cccCccchhhhHHHHH
Confidence            566899999999999887665      332     333444433322  1110           0112224689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccCCcccc---ccchhHHHHHHHHHHHHHHHHHHH
Q 025732           84 EAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWK---LGLDIGLVAVLYSAVIGTGFRVGL  159 (249)
Q Consensus        84 aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~---~~~~~~~~~llylgv~~t~la~~l  159 (249)
                      +.++-|...+..||...... .-..++.+....+.+..+|...+.++-.+.+.   .+...-|..+...|+++-.++| .
T Consensus       193 aSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgy-v  271 (347)
T KOG1442|consen  193 ASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGY-V  271 (347)
T ss_pred             HHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhh-e
Confidence            99999999999886543322 24678999999999999998777653211122   1122347777778888777764 4


Q ss_pred             HHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccc
Q 025732          160 CTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT  223 (249)
Q Consensus       160 ~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~  223 (249)
                      -.|-+|-++|..=.+-..---..=.++++.+++|.-+..-+-|-++++.|-....+.|+.|++.
T Consensus       272 Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~  335 (347)
T KOG1442|consen  272 TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK  335 (347)
T ss_pred             eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence            4567788888777777777777778899999999999999999999999987777766544443

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.06  E-value=3.5e-05  Score=59.39  Aligned_cols=69  Identities=13%  Similarity=0.250  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHhccCCccchhhhh-hHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccc
Q 025732          149 AVIGTGFRVGLCTWCLSRTGPLYVSMFK-PLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK  217 (249)
Q Consensus       149 gv~~t~la~~l~~~al~~~g~~~~s~~~-~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~  217 (249)
                      .+++-+++|+++.+++++.+...+=... -+--+..++.+++++||++++.+++|..+|+.|++..+...
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            3455678999999999999987775553 57888899999999999999999999999999998887644

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.96  E-value=3e-05  Score=67.16  Aligned_cols=185  Identities=11%  Similarity=0.165  Sum_probs=130.9

Q ss_pred             HHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHH
Q 025732            9 TFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMN   88 (249)
Q Consensus         9 ~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~   88 (249)
                      +++.++++.+.|-...      ..++..+-.+|+++.++.+.. .               +++. ...|..+.-+|-++=
T Consensus       146 VmiggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs~-~---------------sPNF-~~~Gv~mIsgALl~D  202 (367)
T KOG1582|consen  146 VMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADSQ-T---------------SPNF-NLIGVMMISGALLAD  202 (367)
T ss_pred             hhheeeeeccccccHH------HHHHHHHHHHHHHhhhhcccc-c---------------CCCc-ceeeHHHHHHHHHHH
Confidence            3455666766666665      888888888898887643210 0               1112 367888887888888


Q ss_pred             HHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccCCccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 025732           89 SAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL---GLDIGLVAVLYSAVIGTGFRVGLCTWCL  164 (249)
Q Consensus        89 a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~---~~~~~~~~llylgv~~t~la~~l~~~al  164 (249)
                      |+--.++.+..+..+ +..+..+++..+|.+.++......++-.+.|..   ++.......++.. .++.++...-...+
T Consensus       203 A~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s-~~gylG~~~VLalI  281 (367)
T KOG1582|consen  203 AVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFS-LAGYLGIVFVLALI  281 (367)
T ss_pred             HHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHH-HHhHhhHHHHHHHH
Confidence            887778888777655 235677888888888887766665543344432   1112233333333 34556666666677


Q ss_pred             ccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccc
Q 025732          165 SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK  217 (249)
Q Consensus       165 ~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~  217 (249)
                      +.-|+..++.....--.++++++++++..+++....-|+.+|+.|+++-..+|
T Consensus       282 ~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  282 KLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            88899999999999999999999999999999999999999999999877665

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.94  E-value=7.1e-05  Score=56.86  Aligned_cols=68  Identities=19%  Similarity=0.170  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHhccCCccchhhh-hhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccc
Q 025732          150 VIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK  217 (249)
Q Consensus       150 v~~t~la~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~  217 (249)
                      +++-+++|.++..++++.+...+=.. .-+--+...+.+++++||++++.+++|..+|+.|++..+...
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44567889999999999987766444 446778889999999999999999999999999999887654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.87  E-value=0.00045  Score=61.47  Aligned_cols=125  Identities=18%  Similarity=0.211  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHH-hch--hHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025732           90 AWFILQALILRK-FAA--VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSR  166 (249)
Q Consensus        90 ~y~v~~k~~~~~-~~~--~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~  166 (249)
                      .|.++++++.++ +..  +..+++.|+.+..+...+.......+..     ....+...+..++ ...++-.+-+++++.
T Consensus        14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~al~~   87 (303)
T PF08449_consen   14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSF-LFFLASVLSNAALKY   87 (303)
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence            344566776554 223  6788899999888777665444331111     1122333334443 466777888999999


Q ss_pred             CCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccc
Q 025732          167 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE  220 (249)
Q Consensus       167 ~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~  220 (249)
                      ++...-.++....|+..+++++++++++.+..++++.+++.+|+++....+.++
T Consensus        88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~  141 (303)
T PF08449_consen   88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS  141 (303)
T ss_pred             CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence            999999999999999999999999999999999999999999999888765433

; GO: 0055085 transmembrane transport

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.80  E-value=0.00064  Score=61.42  Aligned_cols=77  Identities=14%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732          141 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  218 (249)
Q Consensus       141 ~~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~  218 (249)
                      .|+.-+.+++ .=+.+.++++.+.+.++.+.+.++.....++.+++++++++|++++.+++|+++.++|+.++.....
T Consensus        78 ~~w~y~lla~-~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   78 PWWKYFLLAL-LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             hHHHHHHHHH-HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            3444444564 5678899999999999999999999999999999999999999999999999999999988877544

Some of the sequences in this family are annotated as putative membrane proteins.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.71  E-value=7.4e-05  Score=66.60  Aligned_cols=199  Identities=19%  Similarity=0.224  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHH
Q 025732            6 PAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEA   85 (249)
Q Consensus         6 Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa   85 (249)
                      =++.++++.+++|||++++      .+.|.++++.|..+++.. ++.-...++   ..+....-.+..+ .-........
T Consensus        87 lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~-~~~~~~~~t---~~~l~~~~~~~~f-l~y~~~~~~~  155 (300)
T PF05653_consen   87 LVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF-APKEEPIHT---LDELIALLSQPGF-LVYFILVLVL  155 (300)
T ss_pred             hhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe-CCCCCCcCC---HHHHHHHhcCcce-ehhHHHHHHH
Confidence            3577889999999999999      999999999999887533 221110000   0000000001111 1111111111


Q ss_pred             HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH---HHHHh-c--cCCccccccchhHHHHHHHHHHHHHHHHHHH
Q 025732           86 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTA---FALIV-V--SEPSDWKLGLDIGLVAVLYSAVIGTGFRVGL  159 (249)
Q Consensus        86 ~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~---~al~~-~--~~~~~~~~~~~~~~~~llylgv~~t~la~~l  159 (249)
                       ...+.....+|..++  +.........++|+...+.   ++... .  .+.+++.  ....|..++. -+.+...+...
T Consensus       156 -~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~--~~~~y~l~~~-~v~~~~~Q~~~  229 (300)
T PF05653_consen  156 -ILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFT--YPLTYLLLLV-LVVTAVLQLYY  229 (300)
T ss_pred             -HHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhh--hhHHHHHHHH-HHHHHHHHHHH
Confidence             111211122221111  1111111222222222111   11111 0  1112332  1223444433 34567888888


Q ss_pred             HHHHhccCCccchhhhhhH-HHHHHHHHHHHHhCCc--cch----hhHHHHHHHHHHhhhhcccccccc
Q 025732          160 CTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDA--FCL----GSLIGAMIIVAGFYAVMWGKSKEE  221 (249)
Q Consensus       160 ~~~al~~~g~~~~s~~~~l-~Pi~a~l~~~l~lgE~--~~~----~~~iG~~LIi~gv~l~~~~~~~~~  221 (249)
                      .++++++-+++.+....+. --..+++-|.++++|.  .++    ....|..+++.|+++....|+.+.
T Consensus       230 LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~  298 (300)
T PF05653_consen  230 LNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEI  298 (300)
T ss_pred             HHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhc
Confidence            9999999999988887776 4566777788888985  444    446678888999988776555443

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.66  E-value=0.00032  Score=52.61  Aligned_cols=66  Identities=23%  Similarity=0.410  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHhccCCccch-hhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          151 IGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       151 ~~t~la~~l~~~al~~~g~~~~-s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      ++-.++|.+..+++|+++...+ +++.-+--+..++.+++++||++++.+++|..++++|+...+..
T Consensus        38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            4556889999999999986655 55666777888999999999999999999999999999887654

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.62  E-value=0.0001  Score=62.28  Aligned_cols=143  Identities=15%  Similarity=0.217  Sum_probs=105.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHhcc-CCcccccc-chhHHHHHHHHH
Q 025732           74 WILGGFFLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDWKLG-LDIGLVAVLYSA  149 (249)
Q Consensus        74 ~~~G~~l~l~aa~~~a~y~v~~k~~~~--~~~~~~~~~~~~~l~g~i~l~~~al~~~~-~~~~~~~~-~~~~~~~llylg  149 (249)
                      ...|.+++....+.-+.|....|+-.+  +.. ....++|..+.+..+++.++++.+. ++...... ......++...|
T Consensus       153 lN~GY~Wm~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISg  231 (309)
T COG5070         153 LNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISG  231 (309)
T ss_pred             cCCceEEEehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHH
Confidence            457889999999999998888776543  233 3788999999999888888887763 12111111 123455677778


Q ss_pred             HHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732          150 VIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  218 (249)
Q Consensus       150 v~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~  218 (249)
                      +.+-+++ ++-.|+++.++.+.-++..-+.-.-..+.|.+++||+.+...+....+=..+-.+....|.
T Consensus       232 l~svgiS-y~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks  299 (309)
T COG5070         232 LCSVGIS-YCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKS  299 (309)
T ss_pred             HHHhhhh-hccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6554454 6789999999999999999999999999999999999999998887775554444444443

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.61  E-value=0.0015  Score=49.44  Aligned_cols=64  Identities=9%  Similarity=0.175  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHhccCCccch-hhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732          151 IGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  214 (249)
Q Consensus       151 ~~t~la~~l~~~al~~~g~~~~-s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~  214 (249)
                      .+-.++|++..+++|+.+...+ +++.-+--+...+.+++++||++++.+++|..+|+.|+...+
T Consensus        43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            4557899999999999997665 445557778889999999999999999999999999998764

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.56  E-value=0.0035  Score=50.01  Aligned_cols=139  Identities=15%  Similarity=0.150  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHH
Q 025732           76 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF  155 (249)
Q Consensus        76 ~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~l  155 (249)
                      ...++.+++.++-....-+..++.+..++|+.-...++..|.+.+..+.+..+..+ ++....+.+|+.. .-|+++..+
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~~-~GG~lGa~~   82 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWAW-IGGLLGAIF   82 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHHH-Hccchhhhh
Confidence            45677888888888888888888887777888899999999999988877744322 2222122234332 223333222


Q ss_pred             HHHHHHHHhccCCccchhhh-hhHHHHHHHHHHHHHhC----CccchhhHHHHHHHHHHhhhhcccc
Q 025732          156 RVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVG----DAFCLGSLIGAMIIVAGFYAVMWGK  217 (249)
Q Consensus       156 a~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l~lg----E~~~~~~~iG~~LIi~gv~l~~~~~  217 (249)
                       ...-.....+.|++.+... ..-|-+.++++|-+=+.    .++++..++|.+++++|+++.+.++
T Consensus        83 -vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~  148 (150)
T COG3238          83 -VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG  148 (150)
T ss_pred             -hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence             3445567778886655444 44477888888887666    6799999999999999976665543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.53  E-value=1.4e-05  Score=69.10  Aligned_cols=134  Identities=11%  Similarity=0.169  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHH
Q 025732           75 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG  154 (249)
Q Consensus        75 ~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~  154 (249)
                      ..|..+..++ ..+....++.++..+..  |.......+++-.++..|..+...+.  .|.......|+  +.=|+.++.
T Consensus        37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~~--v~gp~g~R~~L--iLRg~mG~t  109 (346)
T KOG4510|consen   37 NLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQP--VIGPEGKRKWL--ILRGFMGFT  109 (346)
T ss_pred             ccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEeee--eecCCCcEEEE--Eeehhhhhh
Confidence            4677777777 67777777777776653  35555555433333222222211111  01111111122  123444433


Q ss_pred             HHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          155 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       155 la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                       +..+.++++++++-+.++++.+..|++..+++|++|+|+.+....+|..+.+.|+.++.++
T Consensus       110 -gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP  170 (346)
T KOG4510|consen  110 -GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP  170 (346)
T ss_pred             -HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence             3455566899999999999999999999999999999999999999999999999888765

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.53  E-value=0.00073  Score=50.89  Aligned_cols=66  Identities=17%  Similarity=0.307  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHhccCCccch-hhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732          150 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  215 (249)
Q Consensus       150 v~~t~la~~l~~~al~~~g~~~~-s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~  215 (249)
                      +.+-+++|++...++|+.+...+ +++.-+--+...+.+++++||++++.+++|..+|+.|+...+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            44567899999999999987665 4455577888999999999999999999999999999988754

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.52  E-value=0.00098  Score=59.45  Aligned_cols=119  Identities=13%  Similarity=0.117  Sum_probs=84.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHH
Q 025732           73 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIG  152 (249)
Q Consensus        73 ~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~  152 (249)
                      ++.+|.++.+.++++.+....++||..++.+. -..-.-.   .     ....        +.  . ..|+.    |...
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~~---~-----~~~~--------l~--~-~~W~~----G~~~   59 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAGS---G-----GRSY--------LR--R-PLWWI----GLLL   59 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccc---h-----hhHH--------Hh--h-HHHHH----HHHH
Confidence            46899999999999999999999987665431 0000000   0     0000        11  0 12322    2233


Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732          153 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  215 (249)
Q Consensus       153 t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~  215 (249)
                      .+++..+.+.++.-.+.+.++.+..+.-++..+++..++||+++...++|.++++.|..+...
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            344555666777789999999999999999999999999999999999999999999876554

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.49  E-value=0.0012  Score=48.54  Aligned_cols=57  Identities=21%  Similarity=0.365  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHhccCCccch-hhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHH
Q 025732          150 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII  206 (249)
Q Consensus       150 v~~t~la~~l~~~al~~~g~~~~-s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LI  206 (249)
                      +.+-++++.++.+++|+.+...+ +++.-+..+...+.|++++||++++.+++|..+|
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            33567889999999999998888 5556688999999999999999999999999886

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.23  E-value=0.0043  Score=56.29  Aligned_cols=137  Identities=13%  Similarity=0.119  Sum_probs=89.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH--HHHHHHHHH-HHHHHhccCC-ccccccchhHHHHHHHHH
Q 025732           74 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYL--FFFNTILST-AFALIVVSEP-SDWKLGLDIGLVAVLYSA  149 (249)
Q Consensus        74 ~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~--~l~g~i~l~-~~al~~~~~~-~~~~~~~~~~~~~llylg  149 (249)
                      ...|.++++++++||+.+.+-.|| .|+.+  .+.. |-  .+++.++.. ..+.+..++. +.+...+...+..-+..|
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G   80 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG   80 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence            478999999999999999988887 55553  3333 33  111111111 0111111111 112211223444444555


Q ss_pred             HHHHHHHHHHHHHHhccCCccchhhhhh-HHHHHHHHHHHHHhCCcc---c----hhhHHHHHHHHHHhhhhcc
Q 025732          150 VIGTGFRVGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAF---C----LGSLIGAMIIVAGFYAVMW  215 (249)
Q Consensus       150 v~~t~la~~l~~~al~~~g~~~~s~~~~-l~Pi~a~l~~~l~lgE~~---~----~~~~iG~~LIi~gv~l~~~  215 (249)
                      + .=.++...+..++++.|.+.+..+.. ++-+.+.+++.+++||-.   +    ..-++|.++++.|+.+..+
T Consensus        81 ~-~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         81 A-LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             H-HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            4 35678899999999999888776654 578899999999999754   2    3578889999999999887

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.15  E-value=0.026  Score=51.29  Aligned_cols=199  Identities=11%  Similarity=0.060  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhccccc---ccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732            6 PAFTFVLAIIFRLEKL---NWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA   82 (249)
Q Consensus         6 Pi~~~ils~l~~~e~~---~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (249)
                      -+..+++..++++|-.   +..  ....-.+|+++.++|+++.... |.  ..+  + +++  .+.+.+.+...|.++++
T Consensus       111 lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~A-g~--~k~--~-~~~--~~~~~~~~~~KGi~ial  180 (345)
T PRK13499        111 LIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRA-GQ--LKE--R-KMG--IKKAEEFNLKKGLILAV  180 (345)
T ss_pred             HHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHh-hh--hcc--c-ccc--cccccccchHhHHHHHH
Confidence            3455667777777643   222  1222677888888888887532 10  000  0 000  00012345678999999


Q ss_pred             HHHHHHHHHH-------HHHHHHHHHhchhHHHHHHHHH---HHHHHH-HHHHHHh--c-cCCccc-ccc-chhH-HHHH
Q 025732           83 AEAFMNSAWF-------ILQALILRKFAAVLIIMFYLFF---FNTILS-TAFALIV--V-SEPSDW-KLG-LDIG-LVAV  145 (249)
Q Consensus        83 ~aa~~~a~y~-------v~~k~~~~~~~~~~~~~~~~~l---~g~i~l-~~~al~~--~-~~~~~~-~~~-~~~~-~~~l  145 (249)
                      ++.+.|+.|.       ...+...+...++......++.   .|+... +++....  . ++..++ ... .... +-..
T Consensus       181 isgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~  260 (345)
T PRK13499        181 MSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNV  260 (345)
T ss_pred             HHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHH
Confidence            9999999998       4433221111122333322322   444332 2232321  1 111111 111 1011 1111


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhccCCccchhh---hh-hHHHHHHHHHHHHHhCCccc------hhhHHHHHHHHHHhhh
Q 025732          146 ---LYSAVIGTGFRVGLCTWCLSRTGPLYVSM---FK-PLAIVFSIVMDVVIVGDAFC------LGSLIGAMIIVAGFYA  212 (249)
Q Consensus       146 ---lylgv~~t~la~~l~~~al~~~g~~~~s~---~~-~l~Pi~a~l~~~l~lgE~~~------~~~~iG~~LIi~gv~l  212 (249)
                         ...| +.=.+++..|..+-++.|......   +. .+.-+++.+.+.+ +||.=+      ...++|.++++.|..+
T Consensus       261 l~~~l~G-~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l~~G~vliI~g~~l  338 (345)
T PRK13499        261 LLSALAG-VMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVLSLGCVVIILAANI  338 (345)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHHHHHHHHHHHHHHH
Confidence               2223 234667778888888887665544   33 5566999999995 999876      5779999999999887


Q ss_pred             hccc
Q 025732          213 VMWG  216 (249)
Q Consensus       213 ~~~~  216 (249)
                      ....
T Consensus       339 ig~~  342 (345)
T PRK13499        339 VGLG  342 (345)
T ss_pred             Hhhc
Confidence            6554

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.03  E-value=0.009  Score=52.31  Aligned_cols=81  Identities=12%  Similarity=0.122  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhh-HHHHHHHHHHHHHhCCccchhhH----HHHHHHHHHhhhhcc
Q 025732          141 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGSL----IGAMIIVAGFYAVMW  215 (249)
Q Consensus       141 ~~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~-l~Pi~a~l~~~l~lgE~~~~~~~----iG~~LIi~gv~l~~~  215 (249)
                      .|+.-+..|+ .=.++...++++.++.|.+++..+.. ++-+.+.+++++++||.-+..+.    ++.++|+.|+++..+
T Consensus        44 ~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   44 SFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            4555555665 45678899999999999999998874 56777899999999998776544    477888999999888


Q ss_pred             ccccccc
Q 025732          216 GKSKEEK  222 (249)
Q Consensus       216 ~~~~~~~  222 (249)
                      +++++++
T Consensus       123 ~~~~~~~  129 (269)
T PF06800_consen  123 QDKKSDK  129 (269)
T ss_pred             ccccccc
Confidence            7665554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.01  E-value=0.00014  Score=55.22  Aligned_cols=39  Identities=26%  Similarity=0.421  Sum_probs=36.8

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhh
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT   46 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~   46 (249)
                      .++.|+++++++.+++|||++++      +++|++++++|++++.
T Consensus        67 ~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~li~  105 (113)
T PF13536_consen   67 FSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVILIA  105 (113)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHh
Confidence            36799999999999999999999      9999999999999996

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.71  E-value=0.0043  Score=53.69  Aligned_cols=67  Identities=18%  Similarity=0.279  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccc
Q 025732          154 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE  220 (249)
Q Consensus       154 ~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~  220 (249)
                      .++..+.+.++++.+|+.--+......++++++++++++.+++..||++..++..|+.++.......
T Consensus        28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            4566788889999999999999999999999999999999999999999999999999988765544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.0067  Score=53.93  Aligned_cols=192  Identities=15%  Similarity=0.156  Sum_probs=104.9

Q ss_pred             hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccc--cCCCCcchhHHHHHH
Q 025732            4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL--LLSPQLSWILGGFFL   81 (249)
Q Consensus         4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~l~   81 (249)
                      +.-+.-++++..++|||++..      ..+|.++|++|..+++.. .|.-     +.-.+...  .--.+..++ .....
T Consensus        99 lsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~h-aP~e-----~~i~t~~el~~~~~~~~Fl-iy~~~  165 (335)
T KOG2922|consen   99 LSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVIH-APKE-----QEIESVEEVWELATEPGFL-VYVII  165 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEEe-cCcc-----cccccHHHHHHHhcCccHH-HHHHH
Confidence            344667899999999999999      999999999999988632 2211     10000000  000011111 11111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHHH-----HHH--HhccCCccccccchhHHHHHHHHHHHH
Q 025732           82 AAEAFMNSAWFILQALILRKFA--AVLIIMFYLFFFNTILSTA-----FAL--IVVSEPSDWKLGLDIGLVAVLYSAVIG  152 (249)
Q Consensus        82 l~aa~~~a~y~v~~k~~~~~~~--~~~~~~~~~~l~g~i~l~~-----~al--~~~~~~~~~~~~~~~~~~~llylgv~~  152 (249)
                      +.-.++.-.+  ..+   +++.  +.+.+.....+.|+.-..-     .++  ....+ .|...  +..|..++.+. .+
T Consensus       166 iil~~~il~~--~~~---p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~-~ql~~--~~ty~~~l~~~-~~  236 (335)
T KOG2922|consen  166 IILIVLILIF--FYA---PRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN-NQLFY--PLTWIFLLVVA-TC  236 (335)
T ss_pred             HHHHHHHHhe--eec---ccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC-ccccc--HHHHHHHHHHH-HH
Confidence            1111111111  111   1111  2344444444444221111     111  11111 22222  23455555454 46


Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhH-HHHHHHHHHHHHhCCccc--h----hhHHHHHHHHHHhhhhcccc
Q 025732          153 TGFRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDAFC--L----GSLIGAMIIVAGFYAVMWGK  217 (249)
Q Consensus       153 t~la~~l~~~al~~~g~~~~s~~~~l-~Pi~a~l~~~l~lgE~~~--~----~~~iG~~LIi~gv~l~~~~~  217 (249)
                      ...+..-.++|++.-+.+.++...|. --.++++.+.++++|--.  .    ..+.|...++.|+++....|
T Consensus       237 ~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~k  308 (335)
T KOG2922|consen  237 VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTK  308 (335)
T ss_pred             HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeec
Confidence            77888888999999998888877776 457788888889998543  3    45678888999988875433

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.21  E-value=0.0025  Score=54.68  Aligned_cols=137  Identities=9%  Similarity=0.027  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHH
Q 025732           77 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR  156 (249)
Q Consensus        77 G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la  156 (249)
                      +.+++|+-++.|+..-.+..|...   +|.. -...+.+|++......++...+...+     ..+..-+..|.+ =.++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG---~p~q-Q~lGtT~GALifaiiv~~~~~p~~T~-----~~~iv~~isG~~-Ws~G   72 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG---KPYQ-QTLGTTLGALIFAIIVFLFVSPELTL-----TIFIVGFISGAF-WSFG   72 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC---ChhH-hhhhccHHHHHHHHHHheeecCccch-----hhHHHHHHhhhH-hhhh
Confidence            467888899999998776655321   1222 22334445544443333322111111     224433445544 3566


Q ss_pred             HHHHHHHhccCCccchhhhhh-HHHHHHHHHHHHHhCCccchhhH----HHHHHHHHHhhhhcccccccccc
Q 025732          157 VGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGSL----IGAMIIVAGFYAVMWGKSKEEKT  223 (249)
Q Consensus       157 ~~l~~~al~~~g~~~~s~~~~-l~Pi~a~l~~~l~lgE~~~~~~~----iG~~LIi~gv~l~~~~~~~~~~~  223 (249)
                      ...++++++..|.+++..... +|-+-+.+++++.+||.-++.+.    +..++++.|+++..++++.++++
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~  144 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEE  144 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccc
Confidence            789999999999999998776 57788899999999999888764    45677889999988876633333

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=95.74  E-value=0.003  Score=48.00  Aligned_cols=38  Identities=18%  Similarity=0.175  Sum_probs=35.3

Q ss_pred             chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhh
Q 025732            3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT   46 (249)
Q Consensus         3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~   46 (249)
                      ++.|++++++++++++||++.+      |++|+.+.+.|++++.
T Consensus        71 ~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         71 SLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3678999999999999999999      9999999999999884

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=95.45  E-value=0.06  Score=41.00  Aligned_cols=57  Identities=18%  Similarity=0.209  Sum_probs=49.7

Q ss_pred             HHHHHHHhccCCccchhhh-hhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhh
Q 025732          157 VGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV  213 (249)
Q Consensus       157 ~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~  213 (249)
                      -.+|++.+++.+-+.+... +.+.-+++++.++++.+|..++..++|+++|+.|+.+.
T Consensus        55 Sv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   55 SVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            4678888999999998888 48899999999998877788889999999999998753

Many members are annotated as potential transmembrane proteins.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=95.43  E-value=0.011  Score=49.38  Aligned_cols=78  Identities=15%  Similarity=0.303  Sum_probs=66.4

Q ss_pred             HHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccc--ccccccCCCCCC
Q 025732          156 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE--KTTEDCGLGSVN  233 (249)
Q Consensus       156 a~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~--~~~~~~~~~~~~  233 (249)
                      +.++|..++++.+|+.++...-..-.+..+++++.+|+++.-..++..++-+.|+.+..+..+.++  --.-+|..||..
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~  145 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAF  145 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999988887655433  334567666643

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=94.90  E-value=0.027  Score=50.58  Aligned_cols=121  Identities=17%  Similarity=0.253  Sum_probs=88.2

Q ss_pred             HHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 025732           91 WFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTG  168 (249)
Q Consensus        91 y~v~~k~~~~--~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~g  168 (249)
                      +++..|+..+  +.+-|..++..+...+.+.++..-.+-..++.+.  .....|..++-+|++ ..++..+-+.++++.+
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~--~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v~  108 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKI--SSKLPLRTLLPLGLV-FCISHVLGNVSLSYVP  108 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcc--ccccchHHHHHHHHH-HHHHHHhcchhhhccc
Confidence            3556676666  4555788888877777777766554433222221  122457778888875 5677888899999999


Q ss_pred             ccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732          169 PLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  214 (249)
Q Consensus       169 ~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~  214 (249)
                      .+..=+.-.++|++.+++++++.+|+.+...+.-...|+.|+.+..
T Consensus       109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias  154 (316)
T KOG1441|consen  109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIAS  154 (316)
T ss_pred             hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEee
Confidence            9999999999999999999999999998876666655666655544

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.77  E-value=0.033  Score=50.58  Aligned_cols=68  Identities=18%  Similarity=0.246  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccc
Q 025732          153 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE  220 (249)
Q Consensus       153 t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~  220 (249)
                      =.++.+.++.+++.+.++..++.....-++...++.++.+|++++...++..+-++|++++...+.++
T Consensus       169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            35678889999999999999999999999999999999999999999999999999999999887665

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=94.40  E-value=2.3  Score=38.58  Aligned_cols=136  Identities=15%  Similarity=0.065  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHHHHHHHHHHhc----cC----CccccccchhHHHHHH
Q 025732           78 GFFLAAEAFMNSAWFILQALILRKFA---AVLIIMFYLFFFNTILSTAFALIVV----SE----PSDWKLGLDIGLVAVL  146 (249)
Q Consensus        78 ~~l~l~aa~~~a~y~v~~k~~~~~~~---~~~~~~~~~~l~g~i~l~~~al~~~----~~----~~~~~~~~~~~~~~ll  146 (249)
                      .+.++...+-++.+....|...++.+   .+.+.++..=+.-.++.....+..+    ..    .+.+....   +...+
T Consensus        17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~---~~~~l   93 (345)
T KOG2234|consen   17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAA---PRETL   93 (345)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhC---hHHHH
Confidence            55666667777777777776544321   1344444444444444333333321    11    11111111   11111


Q ss_pred             HHHH--HHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          147 YSAV--IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       147 ylgv--~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      -.++  +.-.+..-+++.+..+.+|+.-.+...+-...+.++.+++|+++++..||...++...|+.+++.+
T Consensus        94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~  165 (345)
T KOG2234|consen   94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP  165 (345)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            1111  112345568888999999999999999999999999999999999999999999999999999843

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.98  E-value=1.1  Score=39.98  Aligned_cols=113  Identities=16%  Similarity=0.262  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhchh--HHHHHHHHHHHHHHHHHHHHHh--ccCCccccccchhHH--HHHHHHHHHHHHHHHHHHHHHhcc
Q 025732           93 ILQALILRKFAAV--LIIMFYLFFFNTILSTAFALIV--VSEPSDWKLGLDIGL--VAVLYSAVIGTGFRVGLCTWCLSR  166 (249)
Q Consensus        93 v~~k~~~~~~~~~--~~~~~~~~l~g~i~l~~~al~~--~~~~~~~~~~~~~~~--~~llylgv~~t~la~~l~~~al~~  166 (249)
                      +..|....+++-|  +.....|++...+.....-..-  +.++-+|..  ...|  ..++|.+-+-|+.      +++++
T Consensus        29 vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~--~kk~~P~~~lf~~~i~t~~------~slk~  100 (314)
T KOG1444|consen   29 VVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT--AKKWFPVSLLFVGMLFTGS------KSLKY  100 (314)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH--HHHHccHHHHHHHHHHHcc------ccccc
Confidence            3444444555433  4455599999888777654432  222222322  2233  3566666554444      58899


Q ss_pred             CCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhh
Q 025732          167 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV  213 (249)
Q Consensus       167 ~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~  213 (249)
                      .+....+++-...|+...+....++|.+++...+....++++|-...
T Consensus       101 lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~  147 (314)
T KOG1444|consen  101 LNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA  147 (314)
T ss_pred             cCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999888875544

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.26  E-value=0.04  Score=49.10  Aligned_cols=121  Identities=12%  Similarity=0.118  Sum_probs=81.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHH
Q 025732           72 LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVI  151 (249)
Q Consensus        72 ~~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~  151 (249)
                      .++..|..+.+.+.+..+...++.||..++...           +       ..-.+.+...+-. . ..|    |.|++
T Consensus        17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-----------~-------~~ra~~gg~~yl~-~-~~W----w~G~l   72 (335)
T KOG2922|consen   17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-----------S-------GLRAGEGGYGYLK-E-PLW----WAGML   72 (335)
T ss_pred             cCceeeeeehhhccEEEeeehhhhHHHHHHHhh-----------h-------cccccCCCcchhh-h-HHH----HHHHH
Confidence            345778888888888888888887776655321           0       0000111111111 1 123    23444


Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732          152 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       152 ~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      ..+++-..-+.+..-.+++.++.+..+.-+...+++..+++|++++...+|+++.++|-.+....
T Consensus        73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            44444555555555689999999999999999999999999999999999999999986555443

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=93.23  E-value=0.0039  Score=53.52  Aligned_cols=182  Identities=10%  Similarity=0.075  Sum_probs=104.2

Q ss_pred             HHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHHH
Q 025732            8 FTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFM   87 (249)
Q Consensus         8 ~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~   87 (249)
                      -+.+++.+.++|..+         ...+.+++..++++..  |-...   +-+| ++....+...+.-.|....+.+.+.
T Consensus        99 g~sL~gV~~f~EW~t---------~~~~IlG~iAlilivi--G~~lT---s~~~-~~nk~~~~~~n~kkgi~~L~iSt~G  163 (288)
T COG4975          99 GTSLFGVFVFHEWTT---------PTQIILGFIALILIVI--GIYLT---SKQD-RNNKEEENPSNLKKGIVILLISTLG  163 (288)
T ss_pred             hceeeeEEEEeccCc---------chhHHHHHHHHHHHHH--hheEe---eeec-cccccccChHhhhhheeeeeeeccc
Confidence            345566667777543         3344566666655532  11110   0000 1111122333456898889999999


Q ss_pred             HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025732           88 NSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRT  167 (249)
Q Consensus        88 ~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~  167 (249)
                      |-.|.++.+...-+.-+.+--.+..+.++++.+-   ....+.  ..   ....|..+ .-|+ -=+++...+..+.++.
T Consensus       164 Yv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~---~~~~~~--~~---~K~t~~ni-i~G~-~Wa~GNl~ml~a~~~~  233 (288)
T COG4975         164 YVGYVVLFQLFDVDGLSAILPQAIGMVIGALILG---FFKMEK--RF---NKYTWLNI-IPGL-IWAIGNLFMLLAAQKV  233 (288)
T ss_pred             eeeeEeeeccccccchhhhhHHHHHHHHHHHHHh---hccccc--ch---HHHHHHHH-hhHH-HHHhhHHHHHHhhhhh
Confidence            9999888654321100112222333334433321   111111  11   11234433 2343 2456778888899999


Q ss_pred             CccchhhhhhHHHHHHHHHHHHHhCCccchhh----HHHHHHHHHHhhhhc
Q 025732          168 GPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGS----LIGAMIIVAGFYAVM  214 (249)
Q Consensus       168 g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~----~iG~~LIi~gv~l~~  214 (249)
                      |.+..=.+.-+--+++.+-+.++++|+=+..+    ++|.++++.|..+.-
T Consensus       234 GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg  284 (288)
T COG4975         234 GVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG  284 (288)
T ss_pred             ceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence            99888888888899999999999999988754    578888888765543

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=91.58  E-value=2.4  Score=38.35  Aligned_cols=140  Identities=15%  Similarity=0.153  Sum_probs=81.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHHHHH-HHHhccCC-ccccccchhHHHHHHHHH
Q 025732           73 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLII-MFYLFFFNTILSTAF-ALIVVSEP-SDWKLGLDIGLVAVLYSA  149 (249)
Q Consensus        73 ~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~-~~~~~l~g~i~l~~~-al~~~~~~-~~~~~~~~~~~~~llylg  149 (249)
                      +...|.++..+++++-+.+.+=.||. |+.+  .+. =..+.+++-++.-.+ +.+.-++. +-+...+...+......|
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            45789999999999999988777764 5543  332 233455554443222 22222221 111122223344444455


Q ss_pred             HHHHHHHHHHHHHHhccCCccchh-hhhhHHHHHHHHHHHHHhCC-------ccchhhHHHHHHHHHHhhhhccc
Q 025732          150 VIGTGFRVGLCTWCLSRTGPLYVS-MFKPLAIVFSIVMDVVIVGD-------AFCLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       150 v~~t~la~~l~~~al~~~g~~~~s-~~~~l~Pi~a~l~~~l~lgE-------~~~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      ++ =+++-..|-.++++.|.+... +..=+.-+++.++--++.|+       +-....++|.++.+.|+.+.-+.
T Consensus        81 ~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A  154 (344)
T PF06379_consen   81 VL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA  154 (344)
T ss_pred             HH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence            43 455667788899999876543 33334445555555554432       22347889999999999988764

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.13  E-value=0.63  Score=40.08  Aligned_cols=142  Identities=15%  Similarity=0.156  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH-hc----------hhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHH-
Q 025732           83 AEAFMNSAWFILQALILRK-FA----------AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAV-  150 (249)
Q Consensus        83 ~aa~~~a~y~v~~k~~~~~-~~----------~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv-  150 (249)
                      +--+||=.|-+.+.|+.+. |.          -.+.+.++|+....+..=++..+....    +......|.   |.+. 
T Consensus        20 GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~----~~D~t~~~~---YaAcs   92 (337)
T KOG1580|consen   20 GIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKT----EIDNTPTKM---YAACS   92 (337)
T ss_pred             chhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccc----cccCCcchH---HHHHH
Confidence            3357888888999998752 32          124556677776665543322221111    111111222   2221 


Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc-cccccccccccCC
Q 025732          151 IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG-KSKEEKTTEDCGL  229 (249)
Q Consensus       151 ~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~-~~~~~~~~~~~~~  229 (249)
                      ..-.++...-+.+++..+=-..-+--..-|+=.+++|+++.+..-+|..+.=..+|+.|+.+..++ ++...-|.+.-|.
T Consensus        93 ~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~  172 (337)
T KOG1580|consen   93 ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGF  172 (337)
T ss_pred             HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccch
Confidence            122334455567788887555556667788889999999999999999999999999999998876 5555667777777


Q ss_pred             CC
Q 025732          230 GS  231 (249)
Q Consensus       230 ~~  231 (249)
                      |.
T Consensus       173 GE  174 (337)
T KOG1580|consen  173 GE  174 (337)
T ss_pred             HH
Confidence            74

>PRK02237 hypothetical protein; Provisional

Probab=90.62  E-value=2  Score=32.34  Aligned_cols=45  Identities=20%  Similarity=0.196  Sum_probs=37.9

Q ss_pred             hhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732          174 MFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  218 (249)
Q Consensus       174 ~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~  218 (249)
                      .+.-+..+.++++++.+-|++++.+.++|..+.+.|+.++.+.+|
T Consensus        64 AYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         64 AYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            444456678889999999999999999999999999988876554

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=90.30  E-value=1.2  Score=39.70  Aligned_cols=71  Identities=18%  Similarity=0.416  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732          147 YSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  218 (249)
Q Consensus       147 ylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~  218 (249)
                      -.| ++|++=.++=+|+++.++.+.-++.-...+++-.+++.+|-=|+++|.-+.=..+|-+|+++..++..
T Consensus        89 Pta-lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT  159 (349)
T KOG1443|consen   89 PTA-LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST  159 (349)
T ss_pred             hhh-hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence            344 47888888999999999999999999999999999999999999999999999999999988876544

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=89.61  E-value=0.43  Score=35.65  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=27.5

Q ss_pred             HHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732          183 SIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  214 (249)
Q Consensus       183 a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~  214 (249)
                      -+.+++++++|++++.++.|.++++++++.+.
T Consensus        76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF  107 (108)
T PF04342_consen   76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF  107 (108)
T ss_pred             eHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence            34677889999999999999999999987653

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=87.09  E-value=1.4  Score=38.32  Aligned_cols=127  Identities=9%  Similarity=-0.002  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccC-CccccccchhHHHHHHHHHHHHHHH
Q 025732           77 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIGLVAVLYSAVIGTGF  155 (249)
Q Consensus        77 G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~-~~~~~~~~~~~~~~llylgv~~t~l  155 (249)
                      |.+.++.|+++|+...+=.||.- .. +++....+++....+.-+.+.+..+.+ ..+|..     +...+|      +.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~-~g-Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~am-----lgG~lW------~~   67 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFD-TG-DGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAM-----LGGALW------AT   67 (254)
T ss_pred             CchhHHHHHHHhcccceeeEecc-CC-CcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHH-----hhhhhh------hc
Confidence            45677889999998888777643 22 344433333332222222222222211 111111     111111      11


Q ss_pred             HHHHHHHHhccCCccchhhh-hhHHHHHHHHHHHH-HhCCcc-----chhhHHHHHHHHHHhhhhccc
Q 025732          156 RVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVV-IVGDAF-----CLGSLIGAMIIVAGFYAVMWG  216 (249)
Q Consensus       156 a~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l-~lgE~~-----~~~~~iG~~LIi~gv~l~~~~  216 (249)
                      +..+-.-.++.+|-...-.+ ....-+.+-..+-+ ++|++.     .++.++|.++++.|..+...-
T Consensus        68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fi  135 (254)
T PF07857_consen   68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFI  135 (254)
T ss_pred             CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeee
Confidence            22222333444443222221 22344444444432 344332     357899999999987766543

The region concerned is approximately 280 residues long.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=86.83  E-value=0.15  Score=39.82  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHH--hcccccccccccCCceeeeeeeehhhhhhhh
Q 025732            5 IPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT   46 (249)
Q Consensus         5 ~Pi~~~ils~l--~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~   46 (249)
                      .++++.+.++.  +++|+++.+      |++|+++.++|++++.
T Consensus        84 ~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         84 SYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            34445555553  799999999      9999999999999884

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.63  E-value=1.8  Score=32.05  Aligned_cols=34  Identities=12%  Similarity=0.268  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732          182 FSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  215 (249)
Q Consensus       182 ~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~  215 (249)
                      +-+.++++.++|++.+.++.|..++.+|++++.+
T Consensus        82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            3456889999999999999999999999987653

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=85.31  E-value=0.25  Score=38.02  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhh
Q 025732            7 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT   46 (249)
Q Consensus         7 i~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~   46 (249)
                      +.+++.++++++|+++..      |++|+.+-++|++.+-
T Consensus        69 v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         69 LFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            446788999999999999      9999999999998874

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=84.77  E-value=2  Score=32.19  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=36.7

Q ss_pred             hhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732          176 KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  218 (249)
Q Consensus       176 ~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~  218 (249)
                      .-+..+.++++++.+-|++++.+.++|..+.+.|+.++.+.+|
T Consensus        64 GGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   64 GGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             hhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            3345677889999999999999999999999999998887654

; GO: 0016020 membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=83.36  E-value=0.35  Score=36.56  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhh
Q 025732            7 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV   45 (249)
Q Consensus         7 i~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll   45 (249)
                      +.+++.++++++|+++..      |++|+.+-+.|++.+
T Consensus        74 v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         74 AATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            445778889999999999      999999999999876

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=82.44  E-value=0.41  Score=36.27  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=30.0

Q ss_pred             HHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhh
Q 025732            8 FTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT   46 (249)
Q Consensus         8 ~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~   46 (249)
                      .+++.++++++|+++..      |++|+.+-+.|++.+-
T Consensus        70 ~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         70 LISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            45788999999999999      9999999999999884

>PRK11431 multidrug efflux system protein; Provisional

Probab=82.42  E-value=0.39  Score=36.06  Aligned_cols=33  Identities=12%  Similarity=0.040  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhh
Q 025732            7 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV   45 (249)
Q Consensus         7 i~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll   45 (249)
                      +.+++.++++++|+++..      |++|+.+.+.|++.+
T Consensus        68 v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l  100 (105)
T PRK11431         68 VGAAITGIVLLGESASPA------RLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence            456788999999999999      999999999999987

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=81.45  E-value=0.45  Score=35.78  Aligned_cols=33  Identities=21%  Similarity=0.197  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhh
Q 025732            7 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV   45 (249)
Q Consensus         7 i~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll   45 (249)
                      +.+++.++++++|+++..      |++|+.+-+.|++.+
T Consensus        69 v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L  101 (106)
T COG2076          69 VGTALVGVLLFGESLSLI------KLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence            456788899999999999      999999999999987

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=80.04  E-value=9.7  Score=35.84  Aligned_cols=60  Identities=15%  Similarity=0.070  Sum_probs=33.3

Q ss_pred             hhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccccccccccCCCCCCCccccccc
Q 025732          174 MFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPL  241 (249)
Q Consensus       174 ~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (249)
                      ......|+++.++..+..-..-......|.+++..|+.+..+.++++++        .++.++||.|+
T Consensus       393 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~--------~~~~~~~~~~~  452 (473)
T TIGR00905       393 RKALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKERGK--------HVFNKKEILIA  452 (473)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCHHHHHHH
Confidence            3445666666655544332222234567888888887655554433321        13667888774

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.17
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.87
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	95.42
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	95.18

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.17  E-value=4.6e-11  Score=93.20  Aligned_cols=70  Identities=19%  Similarity=0.166  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHhccCCccchhhh-hhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccc
Q 025732          148 SAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK  217 (249)
Q Consensus       148 lgv~~t~la~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~  217 (249)
                      +++++++++|++|++++++.+++++..+ ..+.|+++++++++++||++++.+++|+++|++|+++.+..+
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5778899999999999999999999998 899999999999999999999999999999999999987643

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.87  E-value=9.5e-09  Score=77.10  Aligned_cols=70  Identities=19%  Similarity=0.166  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHhccCCccchhhh-hhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccc
Q 025732          148 SAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK  217 (249)
Q Consensus       148 lgv~~t~la~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~  217 (249)
                      .++++.+++|.++.+++|+.+.+.+... ..+.|+++.+++++++||++++.+++|.++|+.|++..+..+
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5667889999999999999999999887 799999999999999999999999999999999999887643

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=95.42  E-value=0.0023  Score=47.39  Aligned_cols=39  Identities=13%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhh
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT   46 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~   46 (249)
                      .++.|++++++++++++|+++.+      |++|+++.+.|++++.
T Consensus        64 ~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           64 SGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN  102 (110)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            46789999999999999999999      9999999999999885

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=95.18  E-value=0.0037  Score=48.18  Aligned_cols=40  Identities=13%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhh
Q 025732            2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF   47 (249)
Q Consensus         2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~   47 (249)
                      .++.|++++++++++++|+++.+      +++|+++.+.|++++..
T Consensus        64 ~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           64 SGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            36789999999999999999999      99999999999998864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00