Citrus Sinensis ID: 025742

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MNDEQVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHccccccccccccccccccccEEEccccccccccHHHHcccccccEEEEEcccccEEEcccccEEEEEcccEEEEEcccEEEEEcccccccccccccccccccccccccccEEEEccccccEEEcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHccccHHccccccccccEEEEccccccHHHHHccccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEEccEEEEEccccccccccccccccHHHHHHccccccEEEEEEEEEEEEcccccccHHccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccc
Coil and Loop (DISEMBL)
mndeqvspigrmedddmgpqwlkpmlrasyfipcvvhgdsnksecnmfcldcmgnafcsyclinhkdhrvvQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVflnerpqprpgkgvtntcEICCRSLLDsfrfcslgcklgamkrgdldltftlrvkhkdgfhggsesdesstpkkirrtpnfnRLMEGLTIYrhshhntnegaerscssgdeattklspatppiynhgnarrrkgiphrapf
Flexible Loop (DISEMBL)
mndeqvspigrmedddmgPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLnerpqprpgkgvtNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVkhkdgfhggsesdesstpkkirrtpnfNRLMEGLTIYRHSHHNTNEGAERSCSSGDEattklspatppiynhgnarrrkgiphrapf
Low Complexity Region (SEG)
MNDEQVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF
Disordered region (IsUnstruct)
*******************QWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNER*****GKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH******************************GLTIY**************************************************
Disordered Region (DISOPRED)
*********************LKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVF*****************EICCRSLLDSFRFCSLGCKLGAMKRG******************************************************************************************IPHRAPF
Disordered Region (DISEMBL)
MNDEQVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDG**************KIRRTPNFNRLMEGLTIYRHSHH*****************TKLSPATPPIYNHGNARRR*********
Disordered Region (DISPRO)
****************MGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTF*L*****************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNDEQVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
224083394	238	predicted protein [Populus trichocarpa]	0.951	0.991	0.827	1e-111
255539370	235	protein with unknown function [Ricinus c	0.939	0.991	0.815	1e-111
224065625	238	predicted protein [Populus trichocarpa]	0.951	0.991	0.815	1e-111
225457699	247	PREDICTED: uncharacterized protein LOC10	0.975	0.979	0.781	1e-106
147811534	240	hypothetical protein VITISV_044258 [Viti	0.951	0.983	0.780	1e-103
186478716	243	PLATZ transcription factor domain-contai	0.947	0.967	0.743	1e-99
18394936	246	PLATZ transcription factor domain-contai	0.947	0.955	0.743	1e-99
297845080	246	zinc-binding family protein [Arabidopsis	0.951	0.959	0.742	2e-99
21537073	246	unknown [Arabidopsis thaliana]	0.947	0.955	0.739	6e-99
21536890	241	unknown [Arabidopsis thaliana]	0.951	0.979	0.721	3e-93

>gi|224083394|ref|XP_002307009.1| predicted protein [Populus trichocarpa] gi|118489570|gb|ABK96587.1| unknown [Populus trichocarpa x Populus deltoides] gi|222856458|gb|EEE94005.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/244 (82%), Positives = 216/244 (88%), Gaps = 8/244 (3%)

Query: 6   VSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINH 65
           VS  G+M + DMGP WL PMLRASYFIPC VHG+SNKSECNMFCLDCMGNAFCSYCLI H
Sbjct: 2   VSSFGQMGNHDMGPPWLIPMLRASYFIPCGVHGESNKSECNMFCLDCMGNAFCSYCLIYH 61

Query: 66  KDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTC 125
           KDHRVVQIRRSSYHNVVRVNEIQK+IDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTC
Sbjct: 62  KDHRVVQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTC 121

Query: 126 EICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH-KDGFHGGSESDESSTPKKIRR 184
           EICCRSLLDSFRFCSLGCKLG MKRGD DLTF +++KH +D F GGSESDESSTPKKIRR
Sbjct: 122 EICCRSLLDSFRFCSLGCKLGGMKRGDPDLTFAVKLKHNRDPFFGGSESDESSTPKKIRR 181

Query: 185 TPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPH 244
           T  FNRLMEGL+IY     + N+GAE   SSGD+A T +SPATPPI+NH NARRRKGIPH
Sbjct: 182 THAFNRLMEGLSIYS----SNNDGAE---SSGDDAATNISPATPPIFNHRNARRRKGIPH 234

Query: 245 RAPF 248
           RAPF
Sbjct: 235 RAPF 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539370|ref|XP_002510750.1| protein with unknown function [Ricinus communis] gi|223551451|gb|EEF52937.1| protein with unknown function [Ricinus communis]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/244 (81%), Positives = 213/244 (87%), Gaps = 11/244 (4%)

Query: 6   VSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINH 65
           VSP G+M   D+GP WL+PMLRASYF+PC  HGDSNKSECN+FCLDCMGNA CSYCLINH
Sbjct: 2   VSPFGQMVHHDLGPPWLRPMLRASYFVPCSFHGDSNKSECNLFCLDCMGNALCSYCLINH 61

Query: 66  KDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTC 125
           KDHR+VQIRRSSYHNVVRVNEIQK+IDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTC
Sbjct: 62  KDHRIVQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTC 121

Query: 126 EICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH-KDGFHGGSESDESSTPKKIRR 184
           EICCRSLLDSFRFCSLGCKLG MKRGD DLTFTLR+KH +D F GGSESDESSTPKKIR+
Sbjct: 122 EICCRSLLDSFRFCSLGCKLGGMKRGDPDLTFTLRMKHNRDPFLGGSESDESSTPKKIRK 181

Query: 185 TPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPH 244
           T  FNRLM+GL+IY    H          SSGDEATT +SP+TPPIYNH NARRRKGIPH
Sbjct: 182 THAFNRLMDGLSIYSSDGH----------SSGDEATTNISPSTPPIYNHRNARRRKGIPH 231

Query: 245 RAPF 248
           RAPF
Sbjct: 232 RAPF 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065625|ref|XP_002301890.1| predicted protein [Populus trichocarpa] gi|222843616|gb|EEE81163.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/244 (81%), Positives = 215/244 (88%), Gaps = 8/244 (3%)

Query: 6   VSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINH 65
           VSP G+M + D GP WL PMLRASYFIPC VHG+SNKSECNMFCLDCMGNAFCSYCLI H
Sbjct: 2   VSPFGQMRNHDTGPPWLIPMLRASYFIPCAVHGESNKSECNMFCLDCMGNAFCSYCLIYH 61

Query: 66  KDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTC 125
           +DHRVVQIRRSSYHNVVRVNEIQK+IDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTC
Sbjct: 62  RDHRVVQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTC 121

Query: 126 EICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH-KDGFHGGSESDESSTPKKIRR 184
           EICCRSLLDSFRFCSLGCKLG MKRGD DLTF L++K  +D F GGSESDESSTPKKIRR
Sbjct: 122 EICCRSLLDSFRFCSLGCKLGGMKRGDPDLTFALKLKQNRDPFFGGSESDESSTPKKIRR 181

Query: 185 TPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPH 244
           T  FNRLM+GL+IY     + N+GAE   SSGD+A T +SPATPP++NH NARRRKGIPH
Sbjct: 182 THAFNRLMDGLSIY----SSNNDGAE---SSGDDAATNISPATPPLFNHRNARRRKGIPH 234

Query: 245 RAPF 248
           RAPF
Sbjct: 235 RAPF 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457699|ref|XP_002277078.1| PREDICTED: uncharacterized protein LOC100246080 [Vitis vinifera]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/247 (78%), Positives = 214/247 (86%), Gaps = 5/247 (2%)

Query: 6   VSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINH 65
           VS IGRM +D +GP WLKPMLRASYF+PC +HGDSNKSECNMFCLDCMG+A CSYCLI+H
Sbjct: 2   VSSIGRMGNDHLGPPWLKPMLRASYFVPCGIHGDSNKSECNMFCLDCMGDALCSYCLIHH 61

Query: 66  KDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTC 125
           KDH VVQIRRSSYHNVVRVNEIQK+IDISCVQTY+INSAKIVFLNERPQPRPGKGVTNTC
Sbjct: 62  KDHCVVQIRRSSYHNVVRVNEIQKYIDISCVQTYVINSAKIVFLNERPQPRPGKGVTNTC 121

Query: 126 EICCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH-KDGFHGGSESDESSTPKKIRR 184
           EICCRSLLDSFRFCSLGCKLGAMKRGD DLTF L++KH ++ FH GSESDESSTP+K +R
Sbjct: 122 EICCRSLLDSFRFCSLGCKLGAMKRGDPDLTFWLKLKHGRETFH-GSESDESSTPRKFQR 180

Query: 185 TPNFNRLM-EGLTIYRHSHHNTNEGAERSC--SSGDEATTKLSPATPPIYNHGNARRRKG 241
           T  F+RLM +G TI    HH+    A++S   SSGDE    +SPATPPI+NH NARRRKG
Sbjct: 181 THLFSRLMIDGPTISLDGHHDATVAADKSTASSSGDETINNISPATPPIFNHSNARRRKG 240

Query: 242 IPHRAPF 248
           IPHRAPF
Sbjct: 241 IPHRAPF 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811534|emb|CAN67639.1| hypothetical protein VITISV_044258 [Vitis vinifera]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/241 (78%), Positives = 209/241 (86%), Gaps = 5/241 (2%)

Query: 12  MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVV 71
           M +D +GP WLKPMLRASYF+PC +HGDSNKSECNMFCLDCMG+A CSYCLI+HKDH VV
Sbjct: 1   MGNDHLGPPWLKPMLRASYFVPCGIHGDSNKSECNMFCLDCMGDALCSYCLIHHKDHCVV 60

Query: 72  QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 131
           QIRRSSYHNVVRVNEIQK+IDISCVQTY+INSAKIVFLNERPQPRPGKGVTNTCEICCRS
Sbjct: 61  QIRRSSYHNVVRVNEIQKYIDISCVQTYVINSAKIVFLNERPQPRPGKGVTNTCEICCRS 120

Query: 132 LLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKH-KDGFHGGSESDESSTPKKIRRTPNFNR 190
           LLDSFRFCSLGCKLGAMKRGD DLTF L++KH ++ FH GSESDESSTP+K +RT  F+R
Sbjct: 121 LLDSFRFCSLGCKLGAMKRGDPDLTFWLKLKHGRETFH-GSESDESSTPRKFQRTHLFSR 179

Query: 191 LM-EGLTIYRHSHHNTNEGAERSC--SSGDEATTKLSPATPPIYNHGNARRRKGIPHRAP 247
           LM +G TI    HH+    A++S   SSGDE    +SPATPPI+NH NARRRKGIPHRAP
Sbjct: 180 LMIDGPTISLDGHHDATVAADKSTASSSGDETINNISPATPPIFNHSNARRRKGIPHRAP 239

Query: 248 F 248
           F
Sbjct: 240 F 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478716|ref|NP_001117322.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana] gi|4836888|gb|AAD30591.1|AC007369_1 Unknown protein [Arabidopsis thaliana] gi|13877713|gb|AAK43934.1|AF370615_1 Unknown protein [Arabidopsis thaliana] gi|332191932|gb|AEE30053.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/238 (74%), Positives = 197/238 (82%), Gaps = 3/238 (1%)

Query: 13  EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 72
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 7   EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 66

Query: 73  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 132
           IRRSSYHNVVRVNEIQKFIDI+CVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 67  IRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 126

Query: 133 LDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 192
           LDSFRFCSLGCKLG M+RGDL LTF+L+ KH   + GGSESDE++TP K+R+T  FNRLM
Sbjct: 127 LDSFRFCSLGCKLGGMRRGDLSLTFSLKGKHGREYLGGSESDEATTPTKMRKTNAFNRLM 186

Query: 193 EGLTI--YRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 248
            GL+I   R   +  N G +RS SSGDE     SP TPPIYNH N+ RRKG+PHRAPF
Sbjct: 187 SGLSISTVRFDDYGPN-GDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRAPF 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394936|ref|NP_564128.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana] gi|14030627|gb|AAK52988.1|AF375404_1 At1g21000/F9H16_1 [Arabidopsis thaliana] gi|16226407|gb|AAL16160.1|AF428392_1 At1g21000/F9H16_1 [Arabidopsis thaliana] gi|22136542|gb|AAM91057.1| At1g21000/F9H16_1 [Arabidopsis thaliana] gi|332191931|gb|AEE30052.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/238 (74%), Positives = 197/238 (82%), Gaps = 3/238 (1%)

Query: 13  EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 72
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 10  EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query: 73  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 132
           IRRSSYHNVVRVNEIQKFIDI+CVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 70  IRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query: 133 LDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 192
           LDSFRFCSLGCKLG M+RGDL LTF+L+ KH   + GGSESDE++TP K+R+T  FNRLM
Sbjct: 130 LDSFRFCSLGCKLGGMRRGDLSLTFSLKGKHGREYLGGSESDEATTPTKMRKTNAFNRLM 189

Query: 193 EGLTI--YRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 248
            GL+I   R   +  N G +RS SSGDE     SP TPPIYNH N+ RRKG+PHRAPF
Sbjct: 190 SGLSISTVRFDDYGPN-GDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRAPF 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845080|ref|XP_002890421.1| zinc-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297336263|gb|EFH66680.1| zinc-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/237 (74%), Positives = 194/237 (81%), Gaps = 1/237 (0%)

Query: 13  EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 72
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 10  EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query: 73  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 132
           IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 70  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query: 133 LDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 192
           LDSFRFCSLGCKLG MKRGD  LTF+L+ KH   + GGSESDE++TP K+R+T  FNRLM
Sbjct: 130 LDSFRFCSLGCKLGGMKRGDSSLTFSLKGKHGREYQGGSESDEATTPTKMRKTNAFNRLM 189

Query: 193 EGLTIYRHSHHNTNEGA-ERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 248
            GL+I      +   G  +RS SSGDE     SP TPPIYNH N+ RRKG+PHRAPF
Sbjct: 190 SGLSISTVRFDDYGPGGDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRAPF 246

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537073|gb|AAM61414.1| unknown [Arabidopsis thaliana]

 Score =  365 bits (938), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 176/238 (73%), Positives = 197/238 (82%), Gaps = 3/238 (1%)

Query: 13  EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 72
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 10  EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query: 73  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 132
           IRRSSYHNVVRVNEIQKFIDI+CVQT+IINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 70  IRRSSYHNVVRVNEIQKFIDIACVQTHIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query: 133 LDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 192
           LDSFRFCSLGCKLG M+RGDL LTF+L+ KH   + GGSESDE++TP K+R+T  FNRLM
Sbjct: 130 LDSFRFCSLGCKLGGMRRGDLSLTFSLKGKHGREYLGGSESDEATTPTKMRKTNAFNRLM 189

Query: 193 EGLTI--YRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 248
            GL+I   R   +  N G +RS SSGDE     SP TPPIYNH N+ RRKG+PHRAPF
Sbjct: 190 SGLSISTVRFDDYGPN-GDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRAPF 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536890|gb|AAM61222.1| unknown [Arabidopsis thaliana]

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 174/241 (72%), Positives = 194/241 (80%), Gaps = 5/241 (2%)

Query: 11  RMEDDDMG---PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKD 67
           R E+D+     P WL PMLRA+YFIPC +H  SNKSECNMFCLDC   AFCSYCL+NH++
Sbjct: 3   RAEEDNYNLNPPPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLNHRN 62

Query: 68  HRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEI 127
           HRV+QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSA+IVFLNERPQPR GKGVTNTCEI
Sbjct: 63  HRVLQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEI 122

Query: 128 CCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPN 187
           CCRSLLDSFRFCSLGCKLG MKR D  LTF+LR KH   + G  ESDE++TP KIR+T  
Sbjct: 123 CCRSLLDSFRFCSLGCKLGGMKR-DPSLTFSLRGKHGREYEGEWESDEATTPTKIRKTCA 181

Query: 188 FNRLMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAP 247
           FNRLM GL+I      +   G + S SSGDE+  KLSP TPPIYNH N+ RRKG+PHRAP
Sbjct: 182 FNRLMSGLSI-STVKCDYLSGDQPSSSSGDESGFKLSPGTPPIYNHRNSSRRKGVPHRAP 240

Query: 248 F 248
           F
Sbjct: 241 F 241

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.947	0.955	0.743	3.7e-96
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.951	0.963	0.717	5.1e-90
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.572	0.625	0.664	5.4e-61
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.661	0.769	0.574	2.9e-60
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.701	0.805	0.620	9.6e-57
TAIR|locus:2178580	226	AT5G46710 [Arabidopsis thalian	0.758	0.831	0.451	2.4e-44
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.669	0.878	0.460	7.8e-39
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.580	0.562	0.434	4.9e-33
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.891	0.909	0.369	6e-32
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.596	0.604	0.413	6.4e-28

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 177/238 (74%), Positives = 197/238 (82%)

Query:    13 EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 72
             E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct:    10 EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query:    73 IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 132
             IRRSSYHNVVRVNEIQKFIDI+CVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct:    70 IRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query:   133 LDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 192
             LDSFRFCSLGCKLG M+RGDL LTF+L+ KH   + GGSESDE++TP K+R+T  FNRLM
Sbjct:   130 LDSFRFCSLGCKLGGMRRGDLSLTFSLKGKHGREYLGGSESDEATTPTKMRKTNAFNRLM 189

Query:   193 EGLTI--YRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 248
              GL+I   R   +  N G +RS SSGDE     SP TPPIYNH N+ RRKG+PHRAPF
Sbjct:   190 SGLSISTVRFDDYGPN-GDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRAPF 246

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
 Identities = 173/241 (71%), Positives = 194/241 (80%)

Query:    11 RMEDDDMG---PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKD 67
             R E+D+     P WL PMLRA+YFIPC +H  SNKSECNMFCLDC   AFCSYCL+NH++
Sbjct:     7 RAEEDNYNLNPPPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLNHRN 66

Query:    68 HRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEI 127
             HRV+QIRRSSYHNVVRVNEIQK+IDISCVQTYIINSA+IVFLNERPQPR GKGVTNTCEI
Sbjct:    67 HRVLQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEI 126

Query:   128 CCRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPN 187
             CCRSLLDSFRFCSLGCKLG MKR D  LTF+LR KH   + G  ESDE++TP KIR+T  
Sbjct:   127 CCRSLLDSFRFCSLGCKLGGMKR-DPSLTFSLRGKHGREYEGEWESDEATTPTKIRKTCA 185

Query:   188 FNRLMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAP 247
             FNRLM GL+I        + G + S SSGDE+  KLSP TPPIYNH N+ RRKG+PHRAP
Sbjct:   186 FNRLMSGLSISTVKCDYLS-GDQPSSSSGDESGFKLSPGTPPIYNHRNSSRRKGVPHRAP 244

Query:   248 F 248
             F
Sbjct:   245 F 245

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
 Identities = 95/143 (66%), Positives = 117/143 (81%)

Query:    10 GRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHR 69
             G  E+++  P WLKP+L+  +F+ C  HGDS+KSECNM+CLDC     CS CL +HKDHR
Sbjct:    25 GPEEEENRWPPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAHHKDHR 84

Query:    70 VVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICC 129
              +QIRRSSYH+V+RVNEIQK++DI  +QTY+INSAK+VFLNERPQPRPGKGVTNTC++C 
Sbjct:    85 TIQIRRSSYHDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTCKVCY 144

Query:   130 RSLLD-SFRFCSLGCKLGAMKRG 151
             RSL+D SFRFCSLGCK+    RG
Sbjct:   145 RSLVDDSFRFCSLGCKIAGTSRG 167

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 100/174 (57%), Positives = 126/174 (72%)

Query:    19 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSY 78
             P WLKP+LR  +F+ C +H DS+KSECNM+CLDC     CS CL  HKDH  +QIRRSSY
Sbjct:    12 PHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKDHHAIQIRRSSY 71

Query:    79 HNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRF 138
             H+V+RV+EIQKF+DI+ VQTY+INSAK+VFLNERPQPRPGKGV NTCE+C RSL+DSFRF
Sbjct:    72 HDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFRF 131

Query:   139 CSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLM 192
             CSLGCK+  + +           K K+  +  S+SD+S +   I R    + +M
Sbjct:   132 CSLGCKISGISKK----------KRKEWTNNLSDSDDSYSSTSIGRLKKNDDIM 175

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 116/187 (62%), Positives = 139/187 (74%)

Query:    12 MEDDD-MGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRV 70
             ME+DD M P WL PMLRA YF+ C +H  S+KSECN+FCLDC GNAFCS CL +H+ HRV
Sbjct:     1 MENDDVMTPPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHRV 60

Query:    71 VQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCR 130
             +QIRRSSYHNVVRV+EIQK IDISC+QTY+INSAKI FLN RPQ R GK +  TC+IC R
Sbjct:    61 IQIRRSSYHNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSR 120

Query:   131 SLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRRTPNFNR 190
             +LLDSF FCSL CKL  +K G+ D   TL       FH G +SD+SS   KI  T   +R
Sbjct:   121 NLLDSFLFCSLACKLEGVKNGE-DPNLTL-------FHSG-KSDDSS---KIINTGICSR 168

Query:   191 LMEGLTI 197
             L++G++I
Sbjct:   169 LIDGISI 175

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178580 AT5G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 89/197 (45%), Positives = 124/197 (62%)

Query:     3 DEQVSPIGR--MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSY 60
             + ++ P  R  ME ++  P WLKP+L   +F  C  HG   ++EC M+CLDC  ++FCS 
Sbjct:    10 NREIKPKNRRFMEGENQWPIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSL 69

Query:    61 CLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKG 120
             CL  H++HR +QIR SSYHNV +V+EIQK++DIS +QTY+INS+K++FLNERPQ +PGKG
Sbjct:    70 CLSEHENHRTIQIRISSYHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKG 129

Query:   121 VTNTCEICCRSLLDS-FRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTP 179
              TN C +C R L ++ FRFCS+GCK+     G     F  RVKH       S ++ S   
Sbjct:   130 FTNACMVCYRGLAENCFRFCSIGCKVAGTS-G----VFQKRVKHTTNDSDNS-NNSSGVE 183

Query:   180 KKIRRTPNFNRLMEGLT 196
                    N N  ++ L+
Sbjct:   184 NNSSGAENGNSNLQSLS 200

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/176 (46%), Positives = 115/176 (65%)

Query:    19 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLIN-HKDHRVVQIRRSS 77
             P+WL+ +LR ++F  C  H ++ ++ECNMFCL C   AFC YC  + H DH V+QIRRSS
Sbjct:     4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63

Query:    78 YHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGK-GVTNT--------CEIC 128
             YH+VVRV+EI+  +DI  VQTY+INSA+++FLNERPQP+    G  ++        CE C
Sbjct:    64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123

Query:   129 CRSLLDSFRFCSLGCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRR 184
             CR+LLD FRFCSLGCK+  M++   +    LR + +   H G+     ++  + R+
Sbjct:   124 CRTLLDPFRFCSLGCKVEGMRKNKEEEEERLRKERQQETHKGTHPPTHTSNSRRRK 179

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
 Identities = 63/145 (43%), Positives = 91/145 (62%)

Query:    19 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSY 78
             P WL  +    +F+ C  H  + K+E N+ CLDC   + C +C+ +H+ HR++Q+RR  Y
Sbjct:     6 PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCC-TSLCPHCVPSHRFHRLLQVRRYVY 64

Query:    79 HNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRF 138
             H+VVR+ ++QK ID S VQ Y INSAK+VF+ +RPQ R  KG  N C  C RSL + +  
Sbjct:    65 HDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYIH 124

Query:   139 CSLGCKLGAMKRGDLDLTFTLRVKH 163
             CSLGCK+  + +   D+T  L+  H
Sbjct:   125 CSLGCKVDFVMKRYRDITPFLKPCH 149

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 86/233 (36%), Positives = 125/233 (53%)

Query:    19 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSY 78
             P WL+ ++  ++F  C +H    KSE N+FCL C  +  C +CL +H+ H ++Q+RR  Y
Sbjct:    19 PAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSV-CPHCLPSHRSHPLLQVRRYVY 77

Query:    79 HNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRF 138
             H+VVR+++++K ID S VQ Y IN AK++FLN+R Q R  K  +N C  C R L + F F
Sbjct:    78 HDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSR-AKVSSNVCFTCDRILQEPFHF 136

Query:   139 CSLGCKLGAMK-RGDLDLTFTL-RVKHKDGFHGGSESDESSTPKKIRRTPNFNRLMEGLT 196
             CSL CK+  +  +GD DL+  L R+   D    G   D      +I    +   +   L 
Sbjct:   137 CSLSCKVDYLSYQGD-DLSSILYRIDESDFTFEGLRMDGHDQLGEISTMEDGEDI---LV 192

Query:   197 IYRHSHH-NTNEGAERSCSSGDEATTKLSPATPPIYNHGNARRRKGIPHRAPF 248
             I   S   N +   E+  S   +  +   P    + + GN  RRKG PHRAPF
Sbjct:   193 ISDESEQGNNSHKKEKKKSKKKKPESNYLPGMV-LSSLGN--RRKGAPHRAPF 242

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 62/150 (41%), Positives = 88/150 (58%)

Query:    12 MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVV 71
             ME  +  P WL+ +L+  +F  C+ H D  K+E N+ C+DC     C +CL +H  HR++
Sbjct:     1 MESGEF-PAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCC-LTICPHCLSSHTSHRLL 58

Query:    72 QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 131
             QIRR  Y +V+RV +  K +D S +Q Y  NS+K+VF+NERPQ R  +G  N C  C RS
Sbjct:    59 QIRRYVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRS 118

Query:   132 LLDSFRFCSLGCKLGAMKRGDLDLTFTLRV 161
             L   + FC L CK+  +      L+  LRV
Sbjct:   119 LQSPYLFCCLSCKISDVIMRQRGLSGFLRV 148

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	7e-46

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  147 bits (372), Expect = 7e-46
 Identities = 57/72 (79%), Positives = 63/72 (87%)

Query: 74  RRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLL 133
           RRSSYH+VVRV++IQK IDIS VQTY+INSAK+VFLNERPQ RPGKG  N CE C RSLL
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRPGKGSGNICETCDRSLL 60

Query: 134 DSFRFCSLGCKL 145
           D FRFCSLGCK+
Sbjct: 61  DPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.67
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	95.09
smart00336	42	BBOX B-Box-type zinc finger.	94.22
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	85.72
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	82.24

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=2.4e-39  Score=244.54  Aligned_cols=72  Identities=67%  Similarity=1.146  Sum_probs=71.1

Q ss_pred             EeccccceeeechhhhhhcccceeeEEECCcEEEEeeCCCCCCCCCCCCCcccccccccCCCCeeeeecccc
Q 025742           74 RRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKL  145 (248)
Q Consensus        74 RRssYhdVVRv~DIqkllD~S~IQtYvINsakVVFLn~RPq~r~~kg~~~~Ce~C~R~L~D~~rFCSL~CKv  145 (248)
                      |||||||||||.|||||||||+||||+|||+||||||+|||+++++++++.|++|+|+|+|+|+||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999997

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.67  E-value=0.00076  Score=44.60  Aligned_cols=37  Identities=38%  Similarity=0.904  Sum_probs=29.7

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI   73 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   73 (248)
                      .|..|..   .+.++||.+|.. .+|..|.. .|++|.++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~~-~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCNE-PLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTTE-EEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCCC-ccCccCCCCCCCCCEEeEC
Confidence            6888864   348899999998 89999977 4999988764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=95.09  E-value=0.016  Score=37.11  Aligned_cols=36  Identities=31%  Similarity=0.626  Sum_probs=27.9

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQ   72 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQ   72 (248)
                      .|..|..   +...+||.+|.. .+|..|.. .|++|.++-
T Consensus         2 ~C~~H~~---~~~~~fC~~~~~-~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDRA-LLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccCh-hhhhhcChhhcCCCCEee
Confidence            4788843   246899999988 89999964 599987754

>smart00336 BBOX B-Box-type zinc finger

Probab=94.22  E-value=0.038  Score=35.76  Aligned_cols=35  Identities=37%  Similarity=0.868  Sum_probs=27.7

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCcee
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVV   71 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hrvl   71 (248)
                      .|..|..   ....+||.+|.. .+|..|.. .|++|.++
T Consensus         5 ~C~~h~~---~~~~~~C~~c~~-~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECGA-LLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCCc-ccccccChhhcCCCcee
Confidence            5888853   335899999997 89999976 59898765

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=85.72  E-value=0.17  Score=35.23  Aligned_cols=29  Identities=24%  Similarity=0.663  Sum_probs=24.5

Q ss_pred             CCccccccccc---CCCCeeeeeccccCceec
Q 025742          122 TNTCEICCRSL---LDSFRFCSLGCKLGAMKR  150 (248)
Q Consensus       122 ~~~Ce~C~R~L---~D~~rFCSL~CKv~~~~~  150 (248)
                      .+.|.+|+|-+   .+...|||-.|++.....
T Consensus         6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~~~   37 (43)
T PF12855_consen    6 NDYCIVCDKQIDPPDDGSLYCSEECRLKDQEK   37 (43)
T ss_pred             hhHHHHhhccccCCCCCccccCHHHHhHhhhc
Confidence            46799999999   678999999999876554

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=82.24  E-value=0.12  Score=38.01  Aligned_cols=28  Identities=43%  Similarity=0.816  Sum_probs=17.3

Q ss_pred             CcccccccccCC----CCe-eeeeccccCceec
Q 025742          123 NTCEICCRSLLD----SFR-FCSLGCKLGAMKR  150 (248)
Q Consensus       123 ~~Ce~C~R~L~D----~~r-FCSL~CKv~~~~~  150 (248)
                      ..|-+|++...-    +|+ |||-.||+..+.+
T Consensus         3 v~CP~C~k~~~~~~~n~~rPFCS~RCk~iDLg~   35 (57)
T PF03884_consen    3 VKCPICGKPVEWSPENPFRPFCSERCKLIDLGR   35 (57)
T ss_dssp             EE-TTT--EEE-SSSSS--SSSSHHHHHHHHS-
T ss_pred             ccCCCCCCeecccCCCCcCCcccHhhcccCHHH
Confidence            469999998865    564 9999999876654

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.22
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	95.07
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	95.07
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	94.02
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	93.83
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	92.45
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	92.11
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	91.75
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	90.19
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.01
2w0t_A	43	Lethal(3)malignant brain tumor-like 2 protein; zin	84.65
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	81.55

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.22  E-value=0.0091  Score=41.38  Aligned_cols=37  Identities=35%  Similarity=0.758  Sum_probs=29.4

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   73 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   73 (248)
                      .|..|..   ...++||.+|.. .+|..|..  .|++|+++-|
T Consensus        10 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   48 (64)
T 2d8u_A           10 MCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   48 (64)
T ss_dssp             CCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred             cCcCcCC---CccceEcCcCCc-eeCccccCCCcCCCCCeeCH
Confidence            5999954   247899999997 89999963  7999876654

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=95.07  E-value=0.0088  Score=39.82  Aligned_cols=37  Identities=32%  Similarity=0.665  Sum_probs=29.1

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI   73 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   73 (248)
                      .|..|..   ...++||.+|.. .+|..|.. .|++|+++-|
T Consensus         8 ~C~~H~~---e~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l   45 (50)
T 2yvr_A            8 YCNVHKH---EPLVLFCESCDT-LTCRDCQLNAHKDHQYQFL   45 (50)
T ss_dssp             BCSSSTT---CBCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred             cCcCCCC---CCEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence            5999954   247899999987 89999964 7889877654

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=95.07  E-value=0.012  Score=38.98  Aligned_cols=39  Identities=33%  Similarity=0.679  Sum_probs=30.5

Q ss_pred             CCCCccCCCCCCCCcceecccCCCccCCcchh-c-CCCCCceeEE
Q 025742           31 FIPCVVHGDSNKSECNMFCLDCMGNAFCSYCL-I-NHKDHRVVQI   73 (248)
Q Consensus        31 F~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~HrvlQI   73 (248)
                      ...|..|..   -..++||.+|.. .+|..|. . .|++|+++.|
T Consensus         6 ~~~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            6 HPMCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             SCBCSSSTT---SBCCEEETTTTE-EECHHHHHHSTTTTSCEEEC
T ss_pred             CCcCCCCCC---ccccEEcCCCCe-eEcccccCCCcCCCCcEEeC
Confidence            346999963   236799999987 8999996 3 7999988764

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=94.02  E-value=0.031  Score=35.76  Aligned_cols=35  Identities=23%  Similarity=0.519  Sum_probs=28.3

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ   72 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ   72 (248)
                      .|..|.    ....+||.+|.. .+|..|..  .|++|+++.
T Consensus         5 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A            5 KCSEHD----ERLKLYCKDDGT-LSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             CCCSSC----SSCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred             cchhhC----CeeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence            589895    247799999987 89999964  799998753

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=93.83  E-value=0.033  Score=37.48  Aligned_cols=36  Identities=33%  Similarity=0.729  Sum_probs=29.4

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   73 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   73 (248)
                      .|..|.    ....+||.+|.. .+|..|..  .|++|+++-|
T Consensus        10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence            599995    247799999987 89999964  7999987655

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.45  E-value=0.068  Score=37.10  Aligned_cols=36  Identities=25%  Similarity=0.614  Sum_probs=29.7

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   73 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   73 (248)
                      .|..|..    ...+||.+|.. .+|..|..  .|++|+++.|
T Consensus        16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l   53 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT   53 (59)
T ss_dssp             BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred             cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence            5999963    47799999987 89999964  7999988765

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=92.11  E-value=0.06  Score=38.32  Aligned_cols=36  Identities=33%  Similarity=0.838  Sum_probs=28.8

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI   73 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   73 (248)
                      .|..|.    ....+||.+|.. .+|..|.. .|++|+++-|
T Consensus        20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~l   56 (72)
T 2csv_A           20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVTV   56 (72)
T ss_dssp             BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEecH
Confidence            699994    347799999987 89999965 7888876654

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=91.75  E-value=0.057  Score=39.21  Aligned_cols=37  Identities=30%  Similarity=0.823  Sum_probs=29.6

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   73 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   73 (248)
                      .|..|..   -..++||.+|.. .+|..|..  .|++|+++-|
T Consensus        20 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   58 (84)
T 2dja_A           20 TCLDHEN---EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASL   58 (84)
T ss_dssp             CCSSCSS---SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCC
T ss_pred             cCcCcCC---ccccEEcCCCCc-eEcccCcCCCCCCCCCccCH
Confidence            5999953   237899999987 89999964  7999987665

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.19  E-value=0.044  Score=37.92  Aligned_cols=35  Identities=34%  Similarity=0.594  Sum_probs=28.5

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ   72 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ   72 (248)
                      .|..|.    ....+||.+|.. .+|..|..  .|++|+++.
T Consensus        20 ~C~~H~----e~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQ----EALKLFCEVDEE-AICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTC----CBCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred             cChhhC----ceeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence            499994    247799999987 89999964  799998764

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=90.01  E-value=0.1  Score=38.72  Aligned_cols=38  Identities=32%  Similarity=0.763  Sum_probs=29.7

Q ss_pred             CCCccCCCCCCCCcceecccCCCccCCcchh--cCCCCCceeEE
Q 025742           32 IPCVVHGDSNKSECNMFCLDCMGNAFCSYCL--INHKDHRVVQI   73 (248)
Q Consensus        32 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQI   73 (248)
                      ..|..|..   ...++||.+|.. .+|..|.  ..|++|+++-|
T Consensus        60 ~~C~~H~~---e~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~l   99 (101)
T 2jun_A           60 LMCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAAL   99 (101)
T ss_dssp             CCCSSCSS---SCCCEEETTTTE-EECHHHHHHTTTSSSCBCCC
T ss_pred             CcCcCcCC---CcceEECCCCCC-ccchhcCCCCCcCCCCeecC
Confidence            36999953   237899999987 8999996  47999987543

>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}

Probab=84.65  E-value=0.17  Score=34.44  Aligned_cols=25  Identities=32%  Similarity=0.781  Sum_probs=18.4

Q ss_pred             CCCCcccccccc-cCC-----CCeeeeeccc
Q 025742          120 GVTNTCEICCRS-LLD-----SFRFCSLGCK  144 (248)
Q Consensus       120 g~~~~Ce~C~R~-L~D-----~~rFCSL~CK  144 (248)
                      +....||.|++. +..     +-||||++|-
T Consensus         4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca   34 (43)
T 2w0t_A            4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS   34 (43)
T ss_dssp             CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred             CceehhhhhcCcchhhhhccCCcceechhhh
Confidence            345689999984 333     4599999994

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=81.55  E-value=0.79  Score=33.40  Aligned_cols=31  Identities=29%  Similarity=0.508  Sum_probs=25.0

Q ss_pred             CCCCCCCCCcccccccccCC----------CCeeeeecccc
Q 025742          115 PRPGKGVTNTCEICCRSLLD----------SFRFCSLGCKL  145 (248)
Q Consensus       115 ~r~~kg~~~~Ce~C~R~L~D----------~~rFCSL~CKv  145 (248)
                      .++.+...-+|+.|.+.|+.          +-.|||..|-.
T Consensus        13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~   53 (62)
T 2das_A           13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS   53 (62)
T ss_dssp             CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred             cCCCCccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence            45667778899999999984          35899999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.13
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	95.96
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	95.95
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.68
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.64
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	94.63

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0012  Score=43.73  Aligned_cols=37  Identities=35%  Similarity=0.758  Sum_probs=29.2

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   73 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   73 (248)
                      .|..|.+   ...++||.+|.. .+|..|..  .|++|.+.-|
T Consensus         3 ~C~~H~~---e~l~~yC~~c~~-~iC~~C~~~~~Hk~H~v~~l   41 (51)
T d2d8ua1           3 MCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   41 (51)
T ss_dssp             CCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred             CCcccCc---CcceEEcCCCCc-eECccccCcCCcCcCcCcCH
Confidence            5888864   237899999997 89999953  7999976554

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.96  E-value=0.0024  Score=40.48  Aligned_cols=34  Identities=24%  Similarity=0.560  Sum_probs=28.1

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCcee
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVV   71 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hrvl   71 (248)
                      .|+.|..    ..++||.+|.. .+|..|..  .|++|.++
T Consensus         2 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           2 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCC
T ss_pred             CCcccCc----ceeEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence            6899953    47899999987 89999954  69999875

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0013  Score=44.73  Aligned_cols=36  Identities=33%  Similarity=0.841  Sum_probs=29.7

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI   73 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   73 (248)
                      .|..|..    ...+||.+|.. .+|..|+. .|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~~-~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQT-CICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCCc-eECcccCcccCCCCCeeCH
Confidence            6999942    47799999997 89999976 7999877655

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0016  Score=45.07  Aligned_cols=38  Identities=29%  Similarity=0.804  Sum_probs=30.0

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEEE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQIR   74 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQIR   74 (248)
                      .|..|.+   ...++||.+|.. .+|..|..  .|++|.+.-|.
T Consensus        13 ~C~~H~~---e~l~~fC~~C~~-~iC~~C~~~~~Hk~H~~~~i~   52 (71)
T d2djaa1          13 TCLDHEN---EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASLN   52 (71)
T ss_dssp             CCSSCSS---SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcccCC---ccceeEcCCCCc-eeccccccCCCCCCCcCcCHH
Confidence            5999964   126899999987 89999953  69999887664

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.001  Score=43.59  Aligned_cols=36  Identities=33%  Similarity=0.824  Sum_probs=28.6

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchh-c-CCCCCceeE
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCL-I-NHKDHRVVQ   72 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~HrvlQ   72 (248)
                      .|+.|.+   .+.++||.+|.. .+|..|. . .|++|.+.-
T Consensus         7 ~C~~H~~---e~l~~yC~~C~~-~iC~~C~~~~~H~~H~~~~   44 (47)
T d2dq5a1           7 MCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAA   44 (47)
T ss_dssp             BCSSCTT---SBEEEEETTTTE-EEEHHHHHTSSTTSSCCCC
T ss_pred             cchhhCC---CcceEEcCCCCc-cCCccCcCcCCcCCCeEee
Confidence            4999964   346899999997 8999994 3 799997653

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0086  Score=37.91  Aligned_cols=34  Identities=35%  Similarity=0.770  Sum_probs=28.3

Q ss_pred             CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCcee
Q 025742           33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVV   71 (248)
Q Consensus        33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hrvl   71 (248)
                      -|+.|..    ..++||.+|.. .+|..|..  .|++|+++
T Consensus         3 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~   38 (40)
T d2dida1           3 LCPQHHE----ALSLFCYEDQE-AVCLICAISHTHRAHTVV   38 (40)
T ss_dssp             BCTTTCC----BCCEEESSSCS-EECHHHHTSSTTTTSCEE
T ss_pred             cchhhCc----cceEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence            5888943    48899999987 89999964  79999886