Citrus Sinensis ID: 025747

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELYLD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHcccEEEEEcccccEEEEEEccccccccEEEEEEEEEEEEcccccEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEEEEEEEEccccEEEEc
Coil and Loop (DISEMBL)
mdprepppqlhqhqhqhqqpnimmgptsyhtnammppnaaagaaarfsfnplsssqsqsqsqsesqsqlqpkqpldslphggvfdgspslrtgggsfsidpakkkrgrprkytpdgniALRLAttaqspgsladsggggggaagsasepsakrhrgrppgsgkkqldalggvggvgftpHVITVKAGEDISSKIFAfsqqgprtVCILSASGaicnvtlrqptmsggtvTYEVLLIILYdpcnelyld
Flexible Loop (DISEMBL)
MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDgspslrtgggsfsidpakkkrgrprkytpdgNIALRLATTAQSPGSLADSGGGGGGAagsasepsakrhrgrppgsgKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVtlrqptmsggTVTYEVLLIILYDPCNELYLD
Low Complexity Region (SEG)
MDPREpppqlhqhqhqhqqpNIMMGPTSYHTnammppnaaagaaaRFSFNplsssqsqsqsqsesqsqlqpkqpldslpHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQspgsladsggggggaagsasepsaKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELYLD
Disordered region (IsUnstruct)
***********************************************************************************************************************************************************************ALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELY**
Disordered Region (DISOPRED)
***************************************************************************************************************YT***********************************************************GGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELYLD
Disordered Region (DISEMBL)
*******************PNIMMGPTSYHTNAMMPPNAAAGAAARFSFN************************LDSLPHGGVFDGSPSLRTGGGSFSIDP*********KYTPDGNIALRLATTA************************************KKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELYLD
Disordered Region (DISPRO)
****************HQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNP***************************************************************D*NIAL*L*********************************************ALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELYLD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELYLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.318	0.254	0.345	0.0002

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 145 SASEPSAKRHRGRPPGSGKKQLDALGGVGGV--GFTPHVITVKAGEDISSKIFAFSQQGP 202
           ++S    KR RGRPPGS  K    +            HV+ V  G DI   +  ++++  
Sbjct: 79  TSSSAPGKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRG 138

Query: 203 RTVCILSASGAICNVTLRQPT 223
           R V +L  +G + NVTLRQP 
Sbjct: 139 RGVSVLGGNGTVSNVTLRQPV 159

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
224126489	375	predicted protein [Populus trichocarpa]	0.826	0.546	0.563	1e-56
225427270	353	PREDICTED: uncharacterized protein LOC10	0.758	0.532	0.580	1e-52
255557601	376	DNA binding protein, putative [Ricinus c	0.778	0.513	0.597	3e-52
224138096	286	predicted protein [Populus trichocarpa]	0.572	0.496	0.748	3e-51
449462009	362	PREDICTED: uncharacterized protein LOC10	0.830	0.569	0.512	8e-49
357513671	247	hypothetical protein MTR_8g017860, parti	0.766	0.769	0.491	3e-40
356512006	288	PREDICTED: putative DNA-binding protein	0.548	0.472	0.724	7e-39
448872670	362	putative AT-hook DNA-binding protein [El	0.536	0.367	0.647	1e-38
297794575	391	hypothetical protein ARALYDRAFT_494313 [	0.919	0.583	0.478	2e-38
15237481	386	AT hook motif DNA-binding family protein	0.616	0.396	0.577	2e-36

>gi|224126489|ref|XP_002329567.1| predicted protein [Populus trichocarpa] gi|222870276|gb|EEF07407.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/245 (56%), Positives = 161/245 (65%), Gaps = 40/245 (16%)

Query: 6   PPPQLHQHQHQHQQPNIMMGPTSYHTNA---------MMPPNAAAGAAARFSFNPLSSSQ 56
           PPPQL        QP++++ PTS + +          + P NAA G    F FN +S ++
Sbjct: 22  PPPQLQS------QPSMILVPTSSYPSTTSHLINNPNISPQNAALGGG--FPFNTMSGNR 73

Query: 57  SQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDG 116
            QS+ +                   G FDGS    + G  FSI+PAKKKRGRPRKYTPDG
Sbjct: 74  LQSKPE-------------------GAFDGSSPTSSSGMRFSIEPAKKKRGRPRKYTPDG 114

Query: 117 NIALRLATTAQSPG---SLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVG 173
           NIAL L+ T    G     ADSGGGG     +ASE  +K++RGRPPGSGKKQLDALGGVG
Sbjct: 115 NIALGLSPTPVPSGISAGHADSGGGGV-THDAASEHPSKKNRGRPPGSGKKQLDALGGVG 173

Query: 174 GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEV 233
           GVGFTPHVITVKAGEDI+SKI AFSQQGPRTVCILSA+GAICNVTLRQP MSGG+VTYE 
Sbjct: 174 GVGFTPHVITVKAGEDIASKIMAFSQQGPRTVCILSANGAICNVTLRQPAMSGGSVTYEG 233

Query: 234 LLIIL 238
              I+
Sbjct: 234 RFEII 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427270|ref|XP_002281340.1| PREDICTED: uncharacterized protein LOC100245362 [Vitis vinifera] gi|297742130|emb|CBI33917.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/224 (58%), Positives = 149/224 (66%), Gaps = 36/224 (16%)

Query: 22  IMMGPTSYHTNA-----MMPPNAAA-GAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPL 75
           +MMGP SYHTN      MM PN+AA     RFSF  + +S+                 P+
Sbjct: 19  MMMGPNSYHTNMANTSPMMNPNSAAIMQNNRFSFTSMVASK-----------------PV 61

Query: 76  DSLPHGGVFDGSPS-LRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQSPGSLAD 134
           DS P+G   DGS + LR  G  F+I+PAKKKRGRPRKY PDGNIAL LA     P  +  
Sbjct: 62  DS-PYG---DGSSTGLRPCG--FNIEPAKKKRGRPRKYAPDGNIALGLA-----PTPIPS 110

Query: 135 SGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKI 194
           +   G      +SEP AKR+RGRPPGSGKKQLDALG  G VGFTPHVITV  GEDI+SKI
Sbjct: 111 TAAHGDATGTPSSEPPAKRNRGRPPGSGKKQLDALGAAG-VGFTPHVITVNVGEDIASKI 169

Query: 195 FAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIIL 238
            AFSQQGPRTVCILSA+GAICNVTLRQP MSGGT++YE    I+
Sbjct: 170 MAFSQQGPRTVCILSANGAICNVTLRQPAMSGGTISYEGRFDII 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557601|ref|XP_002519830.1| DNA binding protein, putative [Ricinus communis] gi|223540876|gb|EEF42434.1| DNA binding protein, putative [Ricinus communis]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 152/226 (67%), Gaps = 33/226 (14%)

Query: 21  NIMMGPTSYHTNA-----MMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPL 75
           N+M+G   Y  NA     M+ PN        F FN +   ++Q   Q  S          
Sbjct: 26  NMMLG--GYSNNAHPAMTMINPNIPPSG---FPFNSVGPPRTQPSKQPSSD--------- 71

Query: 76  DSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQS------P 129
                GG+FDGS    + G  FS+DPAKKKRGRPRKYTPDGNIAL L+ T  S      P
Sbjct: 72  -----GGLFDGSSPPSSSGMRFSMDPAKKKRGRPRKYTPDGNIALGLSPTPISSSATSLP 126

Query: 130 GSLADSGGGGGGAAGS---ASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKA 186
             +ADSG G G   G+   AS+P +KR+RGRPPGSGKKQLDALGGVGGVGFTPHVITVKA
Sbjct: 127 PHVADSGSGVGVGIGTPAIASDPPSKRNRGRPPGSGKKQLDALGGVGGVGFTPHVITVKA 186

Query: 187 GEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYE 232
           GEDI+SKI AFSQQGPRTVCILSA+GAICNVTLRQP MSGGTVTYE
Sbjct: 187 GEDIASKIMAFSQQGPRTVCILSANGAICNVTLRQPAMSGGTVTYE 232

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138096|ref|XP_002326517.1| predicted protein [Populus trichocarpa] gi|222833839|gb|EEE72316.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 118/147 (80%), Gaps = 5/147 (3%)

Query: 97  FSIDPAKKKRGRPRKYTPDGNIALRLATT----AQSPGSLADSGGGGGGAA-GSASEPSA 151
           FSI+PAKKKRGRPRKYTPDGNIAL L+ T      S G    SGG G G     ASE  +
Sbjct: 3   FSIEPAKKKRGRPRKYTPDGNIALGLSPTPIHSGMSAGQADSSGGAGSGVMPDVASEHPS 62

Query: 152 KRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSAS 211
           K+HRGRPPGSGKKQLDALGG GGVGFTPHVITVKAGEDI+SKI AFSQQGPRTVCILSA+
Sbjct: 63  KKHRGRPPGSGKKQLDALGGTGGVGFTPHVITVKAGEDIASKIMAFSQQGPRTVCILSAN 122

Query: 212 GAICNVTLRQPTMSGGTVTYEVLLIIL 238
           GAICNVTLRQP MSGG+VTYE    I+
Sbjct: 123 GAICNVTLRQPAMSGGSVTYEGRFEII 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462009|ref|XP_004148734.1| PREDICTED: uncharacterized protein LOC101204243 [Cucumis sativus] gi|449511145|ref|XP_004163876.1| PREDICTED: uncharacterized LOC101204243 [Cucumis sativus]

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 159/248 (64%), Gaps = 42/248 (16%)

Query: 1   MDPREPP-PQLHQHQHQHQQPNIMM---------GPTSYHTNAMMPPNAAAG----AAAR 46
           MD RE   P +HQH  Q   PN M+          P S +T+ ++ PN+AA     +A+R
Sbjct: 1   MDSRERSMPSVHQHHQQSTPPNRMIPNNASYSANMPNSNNTSPLINPNSAAAQMMSSASR 60

Query: 47  FSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPS-LRTGGGSFSIDPAKKK 105
           F FN +  S S+    SES             P+   +DGS S LRTGG  F+ID  KKK
Sbjct: 61  FPFNSMMGSSSK---PSES-------------PNAASYDGSQSELRTGG--FNIDSGKKK 102

Query: 106 RGRPRKYTPDGNIALRLATTAQSPGSL-ADSGGGGGGAAGSASEPSAKRHRGRPPGSGKK 164
           RGRPRKY+PDGNIAL L+ T  +  ++ ADS G        + +P  K++RGRPPG+GK+
Sbjct: 103 RGRPRKYSPDGNIALGLSPTPITSSAVPADSAGM------HSPDPRPKKNRGRPPGTGKR 156

Query: 165 QLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTM 224
           Q+DALG  GGVGFTPHVI VK GEDI+SK+ AFSQQGPRTVCILSA GA+CNVTL QP +
Sbjct: 157 QMDALG-TGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTL-QPAL 214

Query: 225 SGGTVTYE 232
           S G+V+YE
Sbjct: 215 SSGSVSYE 222

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513671|ref|XP_003627124.1| hypothetical protein MTR_8g017860, partial [Medicago truncatula] gi|355521146|gb|AET01600.1| hypothetical protein MTR_8g017860, partial [Medicago truncatula]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/246 (49%), Positives = 141/246 (57%), Gaps = 56/246 (22%)

Query: 1   MDPREPPPQLHQHQHQHQQPNIMMGPTSYH-TNA-MMPPNAA--------AGAAARFSFN 50
           MD R  PPQ         QP +M+GPTSY  TN  M+ PN++        A A ARF   
Sbjct: 1   MDSRSAPPQ---------QPTMMVGPTSYAPTNTTMISPNSSTTTTANIMAPATARF--- 48

Query: 51  PLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPR 110
           P +S QS+                    P     DG  S  T G        KKKRGRPR
Sbjct: 49  PFASPQSE--------------------PFSVTHDGPSSPSTLG--------KKKRGRPR 80

Query: 111 KYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALG 170
           KY+PDGNIAL LA  + SP  +A +     G +G+A  P  K+HRGRPPGSGKKQLDALG
Sbjct: 81  KYSPDGNIALGLAPVS-SP--VAATSAASAGDSGNADAP-PKKHRGRPPGSGKKQLDALG 136

Query: 171 GVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVT 230
             GG GFTPHVI V++GEDI+ K+ AFSQ GPRTVCILSA GAI +V LRQP  SG    
Sbjct: 137 A-GGTGFTPHVILVESGEDITEKVMAFSQTGPRTVCILSAIGAISSVILRQPA-SGSIAR 194

Query: 231 YEVLLI 236
           YEV L+
Sbjct: 195 YEVQLV 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512006|ref|XP_003524712.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/138 (72%), Positives = 112/138 (81%), Gaps = 2/138 (1%)

Query: 102 AKKKRGRPRKYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSASEPS-AKRHRGRPPG 160
           AKKKRGRPRKY+PDGNIALRLA T  SP + A  GGGGG +AG AS  + AK+HRGRPPG
Sbjct: 7   AKKKRGRPRKYSPDGNIALRLAPTHASPPAAASGGGGGGDSAGMASADAPAKKHRGRPPG 66

Query: 161 SGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLR 220
           SGKKQLDAL G GGVGFTPHVI V++GEDI++KI AFSQQGPRTVCILSA GAI NVTL+
Sbjct: 67  SGKKQLDAL-GAGGVGFTPHVILVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLQ 125

Query: 221 QPTMSGGTVTYEVLLIIL 238
           Q  M+GG  TYE    I+
Sbjct: 126 QSAMTGGIATYEGRFEII 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|448872670|gb|AGE46020.1| putative AT-hook DNA-binding protein [Elaeis guineensis]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/139 (64%), Positives = 101/139 (72%), Gaps = 6/139 (4%)

Query: 100 DPAKKKRGRPRKYTPDGNIALRLATT----AQSPGS--LADSGGGGGGAAGSASEPSAKR 153
           +P K+KRGRPRKY PDG ++L L T     A SPGS   + S  G G  A SAS  + K+
Sbjct: 90  EPVKRKRGRPRKYGPDGTMSLALTTVSPTAAVSPGSGGFSPSSAGAGNPASSASAEAMKK 149

Query: 154 HRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGA 213
            RGRPPGSGKKQ  A  G  G+GFTPHVITVKAGED+SSKI +FSQ GPR VCILSA+GA
Sbjct: 150 ARGRPPGSGKKQQLAALGSAGIGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSANGA 209

Query: 214 ICNVTLRQPTMSGGTVTYE 232
           I NVTLRQ   SGGTVTYE
Sbjct: 210 ISNVTLRQAATSGGTVTYE 228

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794575|ref|XP_002865172.1| hypothetical protein ARALYDRAFT_494313 [Arabidopsis lyrata subsp. lyrata] gi|297311007|gb|EFH41431.1| hypothetical protein ARALYDRAFT_494313 [Arabidopsis lyrata subsp. lyrata]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/259 (47%), Positives = 156/259 (60%), Gaps = 31/259 (11%)

Query: 1   MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTN------AMMPPNAAAGAAARFSFNPLSS 54
           MD R+ PP     Q+Q Q P  M+   S++ N      A+M P + + +       P S+
Sbjct: 1   MDSRDIPPS----QNQLQPPPGML--MSHYRNPNAAAAALMVPTSTSQSIQHHHRLPFSN 54

Query: 55  SQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPS---LRTGGGSFSIDP---AKKKRGR 108
            Q Q       Q Q+  K  L+SL   G  DGSPS   +R G    + +     KKKRGR
Sbjct: 55  QQQQQSQTFHQQQQMDQKT-LESL---GFGDGSPSSQPMRFGIEDQNQNQQLQVKKKRGR 110

Query: 109 PRKYTPDGNIALRLATTAQSPGSLADS---------GGGGGGAAGSASEPSAKRHRGRPP 159
           PRKYTPDG+IAL LA T+    + ++S           GGGG  G++++P AKR+RGRPP
Sbjct: 111 PRKYTPDGSIALGLAPTSPLLSAASNSYGGGDGGVGDSGGGGGNGNSADPPAKRNRGRPP 170

Query: 160 GSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTL 219
           GS KKQLDALGG  GVGFTPHVI VK GEDI+SK+ AFS+QGPRT+CILSASGA+  VTL
Sbjct: 171 GSSKKQLDALGGTAGVGFTPHVIEVKTGEDIASKVMAFSEQGPRTICILSASGAVGRVTL 230

Query: 220 RQPTMSGGTVTYEVLLIIL 238
           RQ + S G VTYE    I+
Sbjct: 231 RQASHSSGIVTYEGRFEII 249

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237481|ref|NP_199476.1| AT hook motif DNA-binding family protein [Arabidopsis thaliana] gi|9758500|dbj|BAB08908.1| unnamed protein product [Arabidopsis thaliana] gi|51315384|gb|AAT99797.1| At5g46640 [Arabidopsis thaliana] gi|52627131|gb|AAU84692.1| At5g46640 [Arabidopsis thaliana] gi|119657360|tpd|FAA00279.1| TPA: AT-hook motif nuclear localized protein 8 [Arabidopsis thaliana] gi|225879094|dbj|BAH30617.1| hypothetical protein [Arabidopsis thaliana] gi|332008026|gb|AED95409.1| AT hook motif DNA-binding family protein [Arabidopsis thaliana]

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 112/168 (66%), Gaps = 15/168 (8%)

Query: 75  LDSLPHGGVFDGSPSLRTGGGSFSIDP------AKKKRGRPRKYTPDGNIALRLATTA-- 126
           L+SL   G  DGSPS +     F ID        KKKRGRPRKYTPDG+IAL LA T+  
Sbjct: 73  LESL---GFGDGSPSSQPM--RFGIDDQNQQLQVKKKRGRPRKYTPDGSIALGLAPTSPL 127

Query: 127 --QSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITV 184
              +  S  + G G  G  G++ +P  KR+RGRPPGS KKQLDALGG  GVGFTPHVI V
Sbjct: 128 LSAASNSYGEGGVGDSGGNGNSVDPPVKRNRGRPPGSSKKQLDALGGTSGVGFTPHVIEV 187

Query: 185 KAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYE 232
             GEDI+SK+ AFS QG RT+CILSASGA+  V LRQ + S G VTYE
Sbjct: 188 NTGEDIASKVMAFSDQGSRTICILSASGAVSRVMLRQASHSSGIVTYE 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.600	0.386	0.546	1.5e-35
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.524	0.296	0.540	2.6e-31
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.512	0.361	0.520	1.2e-28
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.471	0.336	0.474	5.2e-26
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.254	0.198	0.712	4.9e-24
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.552	0.387	0.425	6.8e-24
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.326	0.214	0.5	8.4e-24
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.258	0.158	0.623	3e-23
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.225	0.133	0.696	5.1e-23
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.512	0.356	0.435	6.1e-23

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 88/161 (54%), Positives = 97/161 (60%)

Query:    82 GVFDGSPSLRTGGGSFSIDP------AKKKRGRPRKYTPDGNIALRLATTAQXXXXXXXX 135
             G  DGSPS +     F ID        KKKRGRPRKYTPDG+IAL LA T+         
Sbjct:    77 GFGDGSPSSQPM--RFGIDDQNQQLQVKKKRGRPRKYTPDGSIALGLAPTSPLLSAASNS 134

Query:   136 XXXXXXXXXXXXXXXX----KRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDIS 191
                                 KR+RGRPPGS KKQLDALGG  GVGFTPHVI V  GEDI+
Sbjct:   135 YGEGGVGDSGGNGNSVDPPVKRNRGRPPGSSKKQLDALGGTSGVGFTPHVIEVNTGEDIA 194

Query:   192 SKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYE 232
             SK+ AFS QG RT+CILSASGA+  V LRQ + S G VTYE
Sbjct:   195 SKVMAFSDQGSRTICILSASGAVSRVMLRQASHSSGIVTYE 235

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 80/148 (54%), Positives = 88/148 (59%)

Query:   103 KKKRGRPRKYTPDG--------NIALRLATTAQXXXXXXXXXXX--------XXXXXXXX 146
             KKKRGRPRKY  DG        NIAL LA T+                            
Sbjct:   131 KKKRGRPRKYAADGGGGGGGGSNIALGLAPTSPLPSASNSYGGGNEGGGGGDSAGANANS 190

Query:   147 XXXXXKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVC 206
                  KR+RGRPPGSGKKQLDALGG GGVGFTPHVI VK GEDI++KI AF+ QGPR +C
Sbjct:   191 SDPPAKRNRGRPPGSGKKQLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAIC 250

Query:   207 ILSASGAICNVTLRQPTMSG--GTVTYE 232
             ILSA+GA+ NV LRQ   S   GTV YE
Sbjct:   251 ILSATGAVTNVMLRQANNSNPTGTVKYE 278

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 75/144 (52%), Positives = 88/144 (61%)

Query:    92 TGGGSFSIDPAKKKRGRPRKYTPD-GNIALRLATTAQXXXXXXXXXXXXXXXXXXXXXXX 150
             TG GS   +P KK+RGRPRKY PD G ++L L   A                        
Sbjct:    89 TGTGS---EPVKKRRGRPRKYGPDSGEMSLGLNPGAPSFTVSQPSSGGDGG--------- 136

Query:   151 XKRHRGRPPGSGKKQL--DALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCIL 208
              ++ RGRPPGS  K+L   ALG  G +GFTPHV+TV AGED+SSKI A +  GPR VC+L
Sbjct:   137 -EKKRGRPPGSSSKRLKLQALGSTG-IGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVL 194

Query:   209 SASGAICNVTLRQPTMSGGTVTYE 232
             SA+GAI NVTLRQ   SGGTVTYE
Sbjct:   195 SANGAISNVTLRQSATSGGTVTYE 218

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 65/137 (47%), Positives = 85/137 (62%)

Query:   101 PAKKKRGRPRKYTPDGNIALRLATTAQXXXXXXXXXXXXXXXXXXXXXXXXKRHRGRPPG 160
             P K+KRGRPRKY  DG+++L L++++                         KR RGRPPG
Sbjct:    96 PMKRKRGRPRKYGQDGSVSLALSSSS---------------VSTITPNNSNKRGRGRPPG 140

Query:   161 SGKKQ-LDALGGV----GGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215
             SGKKQ + ++G +     G+ FTPHVI V  GEDI+SK+ AFSQQGPR +C+LSASGA+ 
Sbjct:   141 SGKKQRMASVGELMPSSSGMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVS 200

Query:   216 NVTLRQPTMSGGTVTYE 232
               TL QP+ S G + YE
Sbjct:   201 TATLIQPSASPGAIKYE 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
 Identities = 47/66 (71%), Positives = 53/66 (80%)

Query:   170 GGVGG-VG--FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG 226
             GGVGG VG  FTPHVITV  GEDI+ +I +FSQQGPR +CILSA+G I NVTLRQP   G
Sbjct:   113 GGVGGGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCG 172

Query:   227 GTVTYE 232
             GT+TYE
Sbjct:   173 GTLTYE 178

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 71/167 (42%), Positives = 92/167 (55%)

Query:    85 DGSP--SLRTGGGSFSIDPA-----KKKRGRPRKYTPDG-NIALRLATTAQXXXXXXXXX 136
             D SP  S     G+    P+     K+KRGRPRKY  DG +++L L+ +           
Sbjct:    76 DSSPADSSAAAAGALVAPPSGDTSVKRKRGRPRKYGQDGGSVSLALSPSISNVSPNSN-- 133

Query:   137 XXXXXXXXXXXXXXXKRHRGRPPGSGKKQ-LDALGGV----GGVGFTPHVITVKAGEDIS 191
                            KR RGRPPGSGKKQ L ++G +     G+ FTPHVI V  GEDI+
Sbjct:   134 ---------------KRGRGRPPGSGKKQRLSSIGEMMPSSTGMSFTPHVIVVSIGEDIA 178

Query:   192 SKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIIL 238
             SK+ +FS QGPR +C+LSASGA+   TL QP  S GT+ YE L  ++
Sbjct:   179 SKVISFSHQGPRAICVLSASGAVSTATLLQPAPSHGTIIYEGLFELI 225

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
 Identities = 43/86 (50%), Positives = 61/86 (70%)

Query:   152 KRHRGRPPGSGKKQ-LDALGG----VGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVC 206
             KR RGRPPG+G+KQ L  LG       G+ F PHVI+V +GEDI SK+ +FSQ+ PR +C
Sbjct:   147 KRARGRPPGTGRKQRLANLGEWMNTSAGLAFAPHVISVGSGEDIVSKVLSFSQKRPRALC 206

Query:   207 ILSASGAICNVTLRQPTMSGGTVTYE 232
             I+S +G + +VTLR+P  +  ++T+E
Sbjct:   207 IMSGTGTVSSVTLREPASTTPSLTFE 232

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
 Identities = 43/69 (62%), Positives = 49/69 (71%)

Query:   169 LGGVG-----GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPT 223
             L GVG     G  FTPHV+ V AGED++ KI  FSQQG R +CILSA+G I NVTLRQ  
Sbjct:   153 LAGVGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSM 212

Query:   224 MSGGTVTYE 232
              SGGT+TYE
Sbjct:   213 TSGGTLTYE 221

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 5.1e-23, Sum P(2) = 5.1e-23
 Identities = 39/56 (69%), Positives = 45/56 (80%)

Query:   177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYE 232
             FTPHV+TV AGED++ KI  FSQQG R +CILSA+G I NVTLRQ   SGGT+TYE
Sbjct:   178 FTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 233

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 61/140 (43%), Positives = 78/140 (55%)

Query:   103 KKKRGRPRKYTPDGNIALRLATTAQXXXXXXXXXXXXXXXXXXXXXXXXKRHRGRPPGSG 162
             KKKRGRPRKY PDG +     +                           KR + +P  S 
Sbjct:    89 KKKRGRPRKYGPDGTVVA--LSPKPISSAPAPSHLPPPSSHVIDFSASEKRSKVKPTNSF 146

Query:   163 KK-----QLDALG-----GVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASG 212
              +     Q++ LG      VGG  FTPH+ITV  GED++ KI +FSQQGPR++C+LSA+G
Sbjct:   147 NRTKYHHQVENLGEWAPCSVGG-NFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANG 205

Query:   213 AICNVTLRQPTMSGGTVTYE 232
              I +VTLRQP  SGGT+TYE
Sbjct:   206 VISSVTLRQPDSSGGTLTYE 225

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	4e-13
cd11378	113	cd11378, DUF296, Domain of unknown function found	2e-10

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score = 63.7 bits (156), Expect = 4e-13
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQP---TMSGGTVTYE 232
             PHV+ ++ GED+   + AF++Q      +LS  GA+ NVTLRQP     S G VT E
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLE 59

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQP---TMSGGTVTYEVL 234
            P V+ ++ GED+   + AF+++      +LS  GA+ N TLR P        TVT+E  
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 235 LIILY 239
           L IL 
Sbjct: 61  LEILS 65

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.64
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.31
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.55
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.53
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	88.25

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.64  E-value=1.6e-16  Score=127.75  Aligned_cols=70  Identities=21%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             ceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCC--CCCeeEEeeeeEEEEeccccee
Q 025747          177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTM--SGGTVTYEVLLIILYDPCNELY  246 (248)
Q Consensus       177 ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~s--sg~tvtyeGrFEILSLsGTiL~  246 (248)
                      ||+|+|||++||||.++|.+||+++.+..|+|+|+|+|++|+|++++.  .....+|+|+|||+||+|||..
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~   72 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISP   72 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEEC
Confidence            689999999999999999999999999888889999999999999842  3458899999999999999975

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.31  E-value=6e-12  Score=106.11  Aligned_cols=73  Identities=23%  Similarity=0.198  Sum_probs=66.0

Q ss_pred             CceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCCC---eeEEeeeeEEEEecccceecC
Q 025747          176 GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEVLLIILYDPCNELYLD  248 (248)
Q Consensus       176 ~ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg~---tvtyeGrFEILSLsGTiL~~~  248 (248)
                      .-+-+++||++|||+.+.|.+||+++....+|++|+|++++++||+.+-.+.   ++.+.|+||||||.|||-.+|
T Consensus         8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~   83 (141)
T COG1661           8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD   83 (141)
T ss_pred             cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC
Confidence            3468899999999999999999999998779999999999999999984433   788999999999999998776

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.55  E-value=0.00083  Score=36.26  Aligned_cols=12  Identities=67%  Similarity=1.088  Sum_probs=4.6

Q ss_pred             cccCCCCCCCCC
Q 025747          103 KKKRGRPRKYTP  114 (248)
Q Consensus       103 KkKRGRPRKY~p  114 (248)
                      +||||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            689999999854

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.53  E-value=0.0012  Score=41.66  Aligned_cols=15  Identities=60%  Similarity=0.922  Sum_probs=12.7

Q ss_pred             cccCCCCCCCCCCCc
Q 025747          103 KKKRGRPRKYTPDGN  117 (248)
Q Consensus       103 KkKRGRPRKY~pdg~  117 (248)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999977653

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=88.25  E-value=0.16  Score=45.53  Aligned_cols=12  Identities=75%  Similarity=1.115  Sum_probs=10.6

Q ss_pred             cCcccCCCCCCC
Q 025747          101 PAKKKRGRPRKY  112 (248)
Q Consensus       101 ~~KkKRGRPRKY  112 (248)
                      .+|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            579999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	6e-11
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	3e-10
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	5e-07

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 58.2 bits (140), Expect = 6e-11
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 161 SGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQ-GPRTVCILSASGAICNVTL 219
           +G      +          + + +  G+++ S++ AF QQ   R   I   +G++ +V L
Sbjct: 2   AGDPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVAL 61

Query: 220 RQPTMSGGTVTYEVLLII 237
           R       T       +I
Sbjct: 62  RYAGQEATTSLTGTFEVI 79

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)

Query: 179 PHVITVKAGEDISSKIFAF-SQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEVLLII 237
              + +  G D+  +I     Q       I S  G +  + +R               I+
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVSTLQVSAPFEIL 63

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 171 GVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGT 228
           G+  +G   ++  V  GE++ + I  F ++      I++  G + N  +         
Sbjct: 4   GMFSLG-RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKE 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.67
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.66
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.59
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.58
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.55
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.22
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	96.62
4i95_A	142	Putative uncharacterized protein; lipocalin-like d	82.13

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.67  E-value=1.2e-16  Score=131.03  Aligned_cols=69  Identities=19%  Similarity=0.213  Sum_probs=64.2

Q ss_pred             ceEEEEEEcCCCcHHHHHHHHHhhCC-ceEEEeccCCceeEEEEcCCCCCCCeeEEeeeeEEEEeccccee
Q 025747          177 FTPHVITVKAGEDISSKIFAFSQQGP-RTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELY  246 (248)
Q Consensus       177 ftpHVIrV~~GEDV~~kI~~Faqq~~-rAicILSa~GaVSnVTLRqp~ssg~tvtyeGrFEILSLsGTiL~  246 (248)
                      |++|+|||.+||||.++|.+||+++. ++.||++++|+|++|+||+++. ..+++|+|+|||+||+|||..
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~-~~~~~~~g~~EIlsl~Gti~~   71 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADS-VSTLQVSAPFEILSLSGTLTY   71 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTS-SCEEEECSCEEEEEEEEEECS
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCC-CccEecCCcEEEEEeEEEEeC
Confidence            78999999999999999999999987 5899999999999999999995 447889999999999999965

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.66  E-value=1.5e-16  Score=132.04  Aligned_cols=74  Identities=18%  Similarity=0.200  Sum_probs=67.2

Q ss_pred             cCCCCceEEEEEEcCCCcHHHHHHHHHhhCC-ceEEEeccCCceeEEEEcCCCCCCCeeEEeeeeEEEEeccccee
Q 025747          172 VGGVGFTPHVITVKAGEDISSKIFAFSQQGP-RTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELY  246 (248)
Q Consensus       172 ~~g~~ftpHVIrV~~GEDV~~kI~~Faqq~~-rAicILSa~GaVSnVTLRqp~ssg~tvtyeGrFEILSLsGTiL~  246 (248)
                      +.+..+++|+|||.+||||.++|.+||+++. ++.|||+++|+|++|+||+++. ..+++|+|+||||||+|||..
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~-~~~~~~~g~~EIlsl~Gti~~   87 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLEL   87 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEET
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCC-CccEecCCcEEEEEeeeeEeC
Confidence            4557889999999999999999999998776 5899999999999999999995 448899999999999999974

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.59  E-value=7.4e-16  Score=125.88  Aligned_cols=70  Identities=13%  Similarity=0.088  Sum_probs=62.3

Q ss_pred             eEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCC---CeeEEeeeeEEEEecccceec
Q 025747          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEVLLIILYDPCNELYL  247 (248)
Q Consensus       178 tpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg---~tvtyeGrFEILSLsGTiL~~  247 (248)
                      ++|+|||.+||||.++|.+||+++.+..|+++++|+|++|+||+++...   ..++|+|+|||+||+|||..-
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~   82 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLK   82 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECC
Confidence            6999999999999999999999998766666999999999999988544   268899999999999999753

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.58  E-value=1e-15  Score=125.46  Aligned_cols=70  Identities=17%  Similarity=0.096  Sum_probs=61.9

Q ss_pred             eEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCC---CeeEEeeeeEEEEecccceec
Q 025747          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEVLLIILYDPCNELYL  247 (248)
Q Consensus       178 tpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg---~tvtyeGrFEILSLsGTiL~~  247 (248)
                      ++|+|||.+||||.++|.+||+++.+..|+++++|+|++|+||+++...   ..++++|+||||||+|||..-
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~   82 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMK   82 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECC
Confidence            6999999999999999999999988654445999999999999998655   278999999999999999753

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.55  E-value=4.4e-15  Score=122.69  Aligned_cols=70  Identities=17%  Similarity=0.137  Sum_probs=62.6

Q ss_pred             eEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCCC---eeEEeeeeEEEEecccceec
Q 025747          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEVLLIILYDPCNELYL  247 (248)
Q Consensus       178 tpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg~---tvtyeGrFEILSLsGTiL~~  247 (248)
                      +.|+|||.+||||+++|.+||+++.+..|+++++|++++|+||+++....   .++|+|+|||+||+|||..-
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~   88 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSM   88 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEcc
Confidence            68999999999999999999999998777779999999999999874332   68999999999999999763

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.22  E-value=1.7e-11  Score=100.92  Aligned_cols=69  Identities=9%  Similarity=0.110  Sum_probs=59.7

Q ss_pred             eEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCCC---eeEEeeeeEEEEecccceec
Q 025747          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEVLLIILYDPCNELYL  247 (248)
Q Consensus       178 tpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg~---tvtyeGrFEILSLsGTiL~~  247 (248)
                      +-+++||.+||||+++|.+||+++.+..++++++|++++++|+.++....   ..+++ +|||+||+|||-.-
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~   84 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWK   84 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcC
Confidence            35899999999999999999999998777779999999999998874332   56788 89999999999653

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=96.62  E-value=0.00088  Score=41.23  Aligned_cols=16  Identities=56%  Similarity=0.881  Sum_probs=14.3

Q ss_pred             cccCCCCCCCCCCCCc
Q 025747          150 SAKRHRGRPPGSGKKQ  165 (248)
Q Consensus       150 ~~kr~RGRP~GSk~k~  165 (248)
                      ..||+||||.|||||-
T Consensus         3 tpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             SCCCCSSCCTTCCCCS
T ss_pred             CCcCCCCCcCcccccC
Confidence            4699999999999984

>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A

Probab=82.13  E-value=1.8  Score=36.11  Aligned_cols=36  Identities=28%  Similarity=0.299  Sum_probs=31.5

Q ss_pred             ceEEEeccCCceeEEEEcCCCCCCCeeEEeeeeEEEEe
Q 025747          203 RTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYD  240 (248)
Q Consensus       203 rAicILSa~GaVSnVTLRqp~ssg~tvtyeGrFEILSL  240 (248)
                      ...=|||.-|.+.|++++ ++ ++.+++..|.|||.|=
T Consensus        36 n~lKIlSdDgtF~Ni~m~-~~-~~aiIt~~GtY~~~SD   71 (142)
T 4i95_A           36 NTFKVLSDDGRIVNFTIR-PG-TDAIITGYGTYRQISA   71 (142)
T ss_dssp             EEEEEECTTSEEEEEECC-TT-SCCEEEEEEEEEEEET
T ss_pred             ccEEEEcCCCcEEEEEEe-cC-CCcEEEEeEEEEecCC
Confidence            367899999999999999 44 6889999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	3e-06
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	1e-05

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 180 HVITVKAGEDISSKIFAFS-QQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIIL 238
           + + +  G+++ S++ AF  Q   R   I   +G++ +V LR       T +      ++
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAG-QEATTSLTGTFEVI 67

Query: 239 Y 239
            
Sbjct: 68  S 68

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 180 HVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLR---QPTMSGGTVTYE 232
            ++ +  G+D+  +I  F ++       +SA GA+ +  +    Q           
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELM 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.56
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.44

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.56  E-value=2.7e-15  Score=120.35  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             CCCCceEEEEEEcCCCcHHHHHHHHHhhCC-ceEEEeccCCceeEEEEcCCCCCCCeeEEeeeeEEEEeccccee
Q 025747          173 GGVGFTPHVITVKAGEDISSKIFAFSQQGP-RTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELY  246 (248)
Q Consensus       173 ~g~~ftpHVIrV~~GEDV~~kI~~Faqq~~-rAicILSa~GaVSnVTLRqp~ssg~tvtyeGrFEILSLsGTiL~  246 (248)
                      +++..|.|++||.+||||+++|.+||+++. ++.||++++|++++|+|++++ ......++|+|||+||+|||-.
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~-~~~~~~~~g~~Ei~sl~G~I~~   75 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAG-QEATTSLTGTFEVISLNGTLEL   75 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTT-CSSCEEEEEEEEEEEEEEEEET
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCC-CCCcEEecCcEEEEEEEEEecc
Confidence            356789999999999999999999999887 699999999999999999998 5667889999999999999864

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.44  E-value=3.8e-14  Score=112.86  Aligned_cols=70  Identities=17%  Similarity=0.106  Sum_probs=63.1

Q ss_pred             eEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCCC---eeEEeeeeEEEEecccceec
Q 025747          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEVLLIILYDPCNELYL  247 (248)
Q Consensus       178 tpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg~---tvtyeGrFEILSLsGTiL~~  247 (248)
                      +-|+|+|.+||||.++|.+||+++.+..|+++++|++++|+||+.+....   .+.++|+|||+||+|||..-
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~   82 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMK   82 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcC
Confidence            68999999999999999999999998889999999999999998764443   67899999999999999643