Citrus Sinensis ID: 025758

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFTMPSVD
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHccccccccEEEccccccccccccccccEEEEccccEEEEcccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHccccEEEccccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccHHHHccHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHccccccccccccccHHccccccccEEEEcccccccEEEEEccccccccHHHHHHHHHHHHHcccccccccccEEEEEEccHHHccHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHcEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHcc
Coil and Loop (DISEMBL)
mlwvdkyrpktldQVIVHQDIAQNLKKLVteqdcphllfygppgsgkKTLIMALLRQVfgpgaekvkvenktwkidagsrnidlelttlssanhvelspsdagfqdRYVVQEVIKEMAknrpidtkgkrGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRlilccnssskVTEAIRSRCLNIRINSPTEEQIVKVLEFIAkkeglqlpsgfATRLAEKSNRSLRRAILSFETCRVQQLRFTMPSVD
Flexible Loop (DISEMBL)
mlwvdkyrpktldqviVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGpgaekvkvenktwkidagsrNIDLELTTLSSANhvelspsdagfqdRYVVQEVIKEmaknrpidtkgkrgfkVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRclnirinspteEQIVKVLEFIAKkeglqlpsgfatrlaEKSNRSLRRAILSfetcrvqqlrftmpsvd
Low Complexity Region (SEG)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFTMPSVD
Disordered region (IsUnstruct)
**WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA*********AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL**********TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA******LRRAILSFETCRVQQLRF******
Disordered Region (DISOPRED)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR****K*KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRF******
Disordered Region (DISEMBL)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFTMPSVD
Disordered Region (DISPRO)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFTMPSVD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
P40938	356	Replication factor C subu	no	no	0.983	0.685	0.517	8e-71
Q8R323	356	Replication factor C subu	yes	no	0.983	0.685	0.513	1e-70
Q2TBV1	356	Replication factor C subu	yes	no	0.983	0.685	0.513	2e-70
Q54BN3	347	Probable replication fact	yes	no	0.967	0.691	0.491	1e-69
Q8X082	352	Replication factor C subu	N/A	no	0.963	0.678	0.458	4e-60
O94697	358	Replication factor C subu	yes	no	0.947	0.656	0.436	9e-59
P38251	354	Replication factor C subu	yes	no	0.927	0.649	0.412	8e-48
Q5UQE8	370	Putative replication fact	N/A	no	0.927	0.621	0.337	9e-37
A2SQT3	321	Replication factor C smal	yes	no	0.822	0.635	0.364	2e-35
O28219	319	Replication factor C smal	yes	no	0.790	0.614	0.381	4e-35

>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2

 Score =  266 bits (681), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 130/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct: 3   LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+++E++T    +  +   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
           L +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQ  
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query: 242 FT----MPSVD 248
           FT    +P  D
Sbjct: 240 FTADQEIPETD 250

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.
Homo sapiens (taxid: 9606)

>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1

 Score =  266 bits (680), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/251 (51%), Positives = 184/251 (73%), Gaps = 7/251 (2%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct: 3   LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+++E++T    +  +   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
           L +R+ +P+ E I  VL  + +KEGL LPS  A RLAEKS R+LR+A+L  E CRVQQ  
Sbjct: 180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239

Query: 242 FT----MPSVD 248
           FT    +P  D
Sbjct: 240 FTEDQEIPETD 250

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Mus musculus (taxid: 10090)

>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1

 Score =  265 bits (677), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/251 (51%), Positives = 183/251 (72%), Gaps = 7/251 (2%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct: 3   LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+++E++T    +  +   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            ++T  ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
           L +R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E CRVQQ  
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query: 242 FT----MPSVD 248
           FT    +P  D
Sbjct: 240 FTADQEIPETD 250

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Bos taurus (taxid: 9913)

>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1

 Score =  263 bits (671), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 119/242 (49%), Positives = 181/242 (74%), Gaps = 2/242 (0%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLW+DKY+P +LD++  H DI+ NLK ++   D PHLL YGP G+GKKT I+A+L++++G
Sbjct: 1   MLWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P A K+K++++T+K    S+NI  ++TT+SS  H+E++P +AG  DR V+Q +IKE+A++
Sbjct: 61  PNALKLKIDHRTFKHPTSSKNI--QITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQS 118

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
            PID+     FK+++LNEVDKLS++AQH+LRRTMEKY+  CRLILCC+S++KV + I+SR
Sbjct: 119 PPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
           CL IR+ +P++E+I KVL  +A  E   LPS  A  +A++S  +LR A++  E+ + +Q 
Sbjct: 179 CLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQY 238

Query: 241 RF 242
            F
Sbjct: 239 PF 240

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B14D6.460 PE=3 SV=1

 Score =  231 bits (589), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/242 (45%), Positives = 166/242 (68%), Gaps = 3/242 (1%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           L VDK+RP++LD +  H ++++ L+ L    D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3   LIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+K++ + ++    S N  LE   ++S  H+E++PSD G  DR VVQ+++KE+A+ +
Sbjct: 63  GVEKIKIDARVFQ---TSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            +D   K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL  NS++ +   IRSRC
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
           L +R+ +PT ++I  VL   AKKEG  +  G   R+AE+S R+LRRA+L +E    Q  +
Sbjct: 180 LLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEK 239

Query: 242 FT 243
            T
Sbjct: 240 VT 241

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rfc5 PE=1 SV=1

 Score =  226 bits (577), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 168/238 (70%), Gaps = 3/238 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLW+D+YRPKTL  +  H+ +++ L  L +  + PHLL YGP G+GKKT ++A+LR+++G
Sbjct: 1   MLWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG+EK+K++ +T+   +  +   L++  +SS +H+E++PSD G  DR ++QE++K++A++
Sbjct: 61  PGSEKLKIDQRTFLTPSSKK---LQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQS 117

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
             +D + K+ FKV+V+N  D+L+R+AQ +LRRTMEKYS + RLIL  NS+SK+ E IRSR
Sbjct: 118 AQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSR 177

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
            L +R+ +PT E+I+ V+  I   +GL+ P      +A   +R+LR+AIL  ET   +
Sbjct: 178 TLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAK 235

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1

 Score =  190 bits (483), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 158/240 (65%), Gaps = 10/240 (4%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           LWVDKYRPK+L+ +  ++++   LK L  + +D PHLL YGP G+GKKT  MALL  +FG
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG  ++K++ + + + A +R   LEL  +SS  H+E++PSD G  DR V+QE++KE+A+ 
Sbjct: 63  PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119

Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
             +D +  +      +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +  
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179

Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
            I+SRCL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239

Component of ATP-dependent clamp loader (RFC and RFC-like) complexes for DNA clamps, such as the POL30/PCNA homotrimer and the checkpoint clamp DDC1:MEC3:RAD17 complex. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighboring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA. Component of the replication factor C (RFC or activator 1) complex which loads POL30/PCNA and acts during elongation of primed DNA templates by DNA polymerase delta and epsilon. RFC has an essential but redundant activity in sister chromatid cohesion establishment. Component of the RFC-like complex CTF18-RFC which is required for efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. Component of the RFC-like RAD24-RFC complex which loads the checkpoint clamp DDC1:MEC3:RAD17 complex and is involved in DNA repair pathways. Component of the RFC-like ELG1-RFC complex which appears to have a role in DNA replication, replication fork re-start, recombination and repair.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subunit L478 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L478 PE=3 SV=1

 Score =  153 bits (387), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 138/237 (58%), Gaps = 7/237 (2%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           M + +KYRPK     + + D+ + LK L + +D PH++  GP GSGKKTL+  LL  ++ 
Sbjct: 1   MFFFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYD 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                ++   + + I+  S   ++E+  L S  H+ + P+     D+Y++QE+IK+ A +
Sbjct: 61  EDVNILR--KRKYNINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAMH 115

Query: 121 RPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
           +  D  K KR FK +V++ ++ L+  +Q +LRRTME+Y+ +CR I+ CN+ SK+ + +RS
Sbjct: 116 KSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRS 175

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
           RC    +  PT E I  V+++IA  E ++L       + +  N +L+ AI  F  C+
Sbjct: 176 RCRTFCVPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIW-FLNCK 231

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Acanthamoeba polyphaga (taxid: 5757)

>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 126/236 (53%), Gaps = 32/236 (13%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +W++KYRPK L +V+  QD+ + L+  V  +  PHLLF G  G GK T  +AL R++FG 
Sbjct: 7   IWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFG- 65

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                     TW +                 N  EL+ SD    D  VV+  IK+ A+  
Sbjct: 66  ---------DTWNM-----------------NFRELNASDERGID--VVRNQIKQFARTA 97

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P+   G   FK+L L+E D L+++AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98  PL---GDATFKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRC 154

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
              R    T+E I + +  IAKKEG+ +  G    +   S   +R+AI + +   +
Sbjct: 155 AIYRFRPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAAI 210

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) (taxid: 410358)

>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rfcS PE=1 SV=1

 Score =  148 bits (373), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                    + W+                  N +E++ SD    D  VV+  IKE A+  
Sbjct: 65  ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI   G   FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. The complex possesses DNA-dependent ATPase activity which is further stimulated by PCNA.

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
225439256	354	PREDICTED: probable replication factor C	1.0	0.700	0.873	1e-129
224146053	353	predicted protein [Populus trichocarpa]	1.0	0.702	0.873	1e-127
359806894	354	uncharacterized protein LOC100818329 [Gl	1.0	0.700	0.857	1e-127
388499612	354	unknown [Lotus japonicus]	1.0	0.700	0.857	1e-127
356511754	354	PREDICTED: replication factor C subunit	1.0	0.700	0.861	1e-126
449453820	354	PREDICTED: replication factor C subunit	1.0	0.700	0.841	1e-125
388511555	354	unknown [Medicago truncatula]	1.0	0.700	0.833	1e-124
217071788	262	unknown [Medicago truncatula]	1.0	0.946	0.833	1e-124
297812933	359	nucleoside-triphosphatase/ nucleotide bi	0.979	0.676	0.855	1e-124
255569436	342	replication factor C / DNA polymerase II	1.0	0.725	0.833	1e-124

>gi|225439256|ref|XP_002263213.1| PREDICTED: probable replication factor C subunit 3 [Vitis vinifera] gi|296089274|emb|CBI39046.3| unnamed protein product [Vitis vinifera]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/252 (87%), Positives = 238/252 (94%), Gaps = 4/252 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLD +IVH D+AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMA+LRQ+FG
Sbjct: 1   MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P A+KVKVENKTWKIDAG+R IDLELTTLSS +H+EL+P DAGFQDRY+VQE+IKEMAKN
Sbjct: 61  PSADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GF+VLVLNEVD+LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
           CLNIRIN+PTEEQI KVLEFIAKKEGLQLPSGFATR+AEKSNRSLRRAILSFETCRVQQ 
Sbjct: 181 CLNIRINAPTEEQITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 RFT----MPSVD 248
            FT    MP +D
Sbjct: 241 PFTNNQAMPPMD 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146053|ref|XP_002325862.1| predicted protein [Populus trichocarpa] gi|222862737|gb|EEF00244.1| predicted protein [Populus trichocarpa]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/252 (87%), Positives = 235/252 (93%), Gaps = 4/252 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQVIVHQ+IA+NLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVIVHQEIAENLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             AEKVKVEN+TWKIDAGSR IDLELTTLSS NHVELSPSD GFQDRY+VQE+IKEMAKN
Sbjct: 61  TSAEKVKVENRTWKIDAGSRTIDLELTTLSSTNHVELSPSDVGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
           CLN+RIN+P EEQIVKVLEFI KKEGLQLP GFA R+A+KSNRSLRRAILSFETCRVQQ 
Sbjct: 181 CLNVRINAPKEEQIVKVLEFIGKKEGLQLPPGFAARIADKSNRSLRRAILSFETCRVQQY 240

Query: 241 RFT----MPSVD 248
            F+    +P +D
Sbjct: 241 PFSSNQAIPPMD 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806894|ref|NP_001241064.1| uncharacterized protein LOC100818329 [Glycine max] gi|255645652|gb|ACU23320.1| unknown [Glycine max]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/252 (85%), Positives = 238/252 (94%), Gaps = 4/252 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQV+VH DIA+NLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVMVHTDIARNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PGAEKVKV+N+TWK+DAGSR++DLELTTLSSANH+E+SPSDAGFQDRY+VQEVIKEMAKN
Sbjct: 61  PGAEKVKVDNRTWKVDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
           CLN+RIN+P+EEQIV+VLEFI KKEGLQLP GFA R+ EKSNR+LRRAILSFETCRVQQ 
Sbjct: 181 CLNVRINAPSEEQIVEVLEFIGKKEGLQLPPGFAARIVEKSNRNLRRAILSFETCRVQQY 240

Query: 241 RF----TMPSVD 248
            F    T+P +D
Sbjct: 241 PFTNKQTIPPMD 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499612|gb|AFK37872.1| unknown [Lotus japonicus]

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/252 (85%), Positives = 238/252 (94%), Gaps = 4/252 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQV+VH D+AQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             AEKVKVEN+TWK+DAGSR+IDLELTTLSSA+H+E+SPSDAGFQDRYVVQE+IKEMAKN
Sbjct: 61  TAAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
           CLNIRIN+P+EEQIV+V+EFI KKEGLQ+PSGFA R+AEKSNR+LRRAILSFETCRVQQ 
Sbjct: 181 CLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQY 240

Query: 241 RF----TMPSVD 248
            F    T+P +D
Sbjct: 241 PFTNRQTIPPMD 252

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511754|ref|XP_003524588.1| PREDICTED: replication factor C subunit 3-like [Glycine max]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/252 (86%), Positives = 236/252 (93%), Gaps = 4/252 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQV+VH DIA NLKKLVTEQD PHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVMVHTDIAHNLKKLVTEQDSPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PGAEKVKVEN+TWKIDAGSR++DLELTTLSSANH+E+SPSDAGFQDRY+VQEVIKEMAKN
Sbjct: 61  PGAEKVKVENRTWKIDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
           CLN+RIN+P+EEQIV+VLEFI KKEGLQLP GFA R+AEKSNR+LRRAILSFETCRV Q 
Sbjct: 181 CLNVRINAPSEEQIVQVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVLQY 240

Query: 241 RFT----MPSVD 248
            FT    +P +D
Sbjct: 241 PFTNKQAIPPMD 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453820|ref|XP_004144654.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus] gi|449521275|ref|XP_004167655.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/252 (84%), Positives = 234/252 (92%), Gaps = 4/252 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQ+ VHQD+AQNLKKLV EQDCPHLLFYGP GSGKKTL+MAL+RQ+FG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P A+KVKVENKTWK+DAG+R ID+ELTTLSSANHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPID+KGKRG KVLVLN+VDKLSREAQHSLRRTMEKYS+ CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
           CLN+RIN PTEEQI KVLE+I KKEGLQLPSGFA+R+AEKSNRSLRRAILSFETCRVQQ 
Sbjct: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 RF----TMPSVD 248
            F     +P +D
Sbjct: 241 PFVSNQAIPPMD 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511555|gb|AFK43839.1| unknown [Medicago truncatula]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/252 (83%), Positives = 234/252 (92%), Gaps = 4/252 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLD  +VH DIAQNLKKLVTE DCPHLLFYGP G+GKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PGAEKVKVEN+ WK+DAGSR+IDLELTTLSSANH+E++PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  PGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRL+LCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
           CLN+RIN+P+EEQIV+VL+FI KKEGLQLPS  A R+AEKSNR+LRRAILSFETCRVQQ 
Sbjct: 181 CLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQY 240

Query: 241 RF----TMPSVD 248
            F    T+P +D
Sbjct: 241 PFTDKQTIPPMD 252

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071788|gb|ACJ84254.1| unknown [Medicago truncatula]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/252 (83%), Positives = 234/252 (92%), Gaps = 4/252 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLD  +VH DIAQNLKKLVTE DCPHLLFYGP G+GKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PGAEKVKVEN+ WK+DAGSR+IDLELTTLSSANH+E++PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  PGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRL+LCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
           CLN+RIN+P+EEQIV+VL+FI KKEGLQLPS  A R+AEKSNR+LRRAILSFETCRVQQ 
Sbjct: 181 CLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQY 240

Query: 241 RF----TMPSVD 248
            F    T+P +D
Sbjct: 241 PFTDKQTIPPMD 252

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812933|ref|XP_002874350.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] gi|297320187|gb|EFH50609.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/243 (85%), Positives = 230/243 (94%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPK+LD+VIVH+DIAQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALL+Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             AEKVKVEN+ WK+DAGSR IDLELTTLSS NHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
           CLN+RIN+P++E+IVKVLEF+AKKE LQLP GFA R+AEKSNRSLRRAILS ETCRVQ  
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query: 241 RFT 243
            FT
Sbjct: 241 PFT 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569436|ref|XP_002525685.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223534985|gb|EEF36668.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/253 (83%), Positives = 235/253 (92%), Gaps = 5/253 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQ++VH+DIAQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQIMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P AEKVKVENKTWKIDAGSR ID+ELTTLSS++H+E+SP D GFQDRY+VQEVIK+MAKN
Sbjct: 61  PSAEKVKVENKTWKIDAGSRTIDVELTTLSSSHHIEMSPGDVGFQDRYIVQEVIKDMAKN 120

Query: 121 RP-IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
           RP +D KG++G+K+LVLNEVDKLSREAQHSLRRTMEKYSA CRLILCCNSSSKVTEAIRS
Sbjct: 121 RPLVDAKGRKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRS 180

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
           RCLN+RI++P+EEQIVKVLEFI KKEGLQLP GFA R+AEKSNRSLRRA+LSFETCRVQQ
Sbjct: 181 RCLNVRISAPSEEQIVKVLEFIGKKEGLQLPHGFAARVAEKSNRSLRRAVLSFETCRVQQ 240

Query: 240 LRFT----MPSVD 248
             FT    +P +D
Sbjct: 241 YPFTSNQPIPPMD 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2180315	354	EMB2775 "EMBRYO DEFECTIVE 2775	0.979	0.686	0.847	6.8e-111
RGD|1306832	356	Rfc3 "replication factor C (ac	0.963	0.671	0.541	1.2e-65
UNIPROTKB|E2R7L0	356	RFC3 "Uncharacterized protein"	0.963	0.671	0.537	3.2e-65
UNIPROTKB|P40938	356	RFC3 "Replication factor C sub	0.963	0.671	0.537	3.2e-65
UNIPROTKB|F1RSR4	356	RFC3 "Uncharacterized protein"	0.967	0.674	0.530	3.2e-65
MGI|MGI:1916513	356	Rfc3 "replication factor C (ac	0.963	0.671	0.533	4.1e-65
UNIPROTKB|F1P3C0	356	RFC3 "Uncharacterized protein"	0.963	0.671	0.528	6.7e-65
UNIPROTKB|Q2TBV1	356	RFC3 "Replication factor C sub	0.963	0.671	0.533	8.5e-65
ZFIN|ZDB-GENE-020809-3	356	rfc3 "replication factor C (ac	0.979	0.682	0.522	7.6e-64
DICTYBASE|DDB_G0293702	347	rfc3 "replication factor C sub	0.967	0.691	0.491	1.6e-63

TAIR|locus:2180315 EMB2775 "EMBRYO DEFECTIVE 2775" [Arabidopsis thaliana (taxid:3702)]

 Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
 Identities = 206/243 (84%), Positives = 229/243 (94%)

Query:     1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             MLWVDKYRPK+LD+VIVH+DIAQ LKKLV+EQDCPHLLFYGP GSGKKTLIMALL+Q++G
Sbjct:     1 MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query:    61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
               AEKVKVEN+ WK+DAGSR IDLELTTLSS NHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct:    61 ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query:   121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
             RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEAI+SR
Sbjct:   121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query:   181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
             CLN+RIN+P++E+IVKVLEF+AKKE LQLP GFA R+AEKSNRSLRRAILS ETCRVQ  
Sbjct:   181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query:   241 RFT 243
              FT
Sbjct:   241 PFT 243

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006260 "DNA replication" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

RGD|1306832 Rfc3 "replication factor C (activator 1) 3" [Rattus norvegicus (taxid:10116)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 131/242 (54%), Positives = 182/242 (75%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
             L IR+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQ  
Sbjct:   180 LAIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FT 243
             FT
Sbjct:   240 FT 241

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005663 "DNA replication factor C complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=IEA;ISO

GO:0046683 "response to organophosphorus" evidence=IEA;ISO

UNIPROTKB|E2R7L0 RFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 130/242 (53%), Positives = 182/242 (75%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
             L +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQ  
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FT 243
             FT
Sbjct:   240 FT 241

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P40938 RFC3 "Replication factor C subunit 3" [Homo sapiens (taxid:9606)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 130/242 (53%), Positives = 182/242 (75%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
             L +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQ  
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FT 243
             FT
Sbjct:   240 FT 241

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS

GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006260 "DNA replication" evidence=IDA;TAS

GO:0003689 "DNA clamp loader activity" evidence=TAS

GO:0016887 "ATPase activity" evidence=IDA

GO:0046683 "response to organophosphorus" evidence=IEP

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000722 "telomere maintenance via recombination" evidence=TAS

GO:0000723 "telomere maintenance" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=TAS

GO:0032201 "telomere maintenance via semi-conservative replication" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

UNIPROTKB|F1RSR4 RFC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 129/243 (53%), Positives = 183/243 (75%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETNSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
             L +R+ +P+ E I  VL  + KKEGL LPS  A +LAEKS R+LR+A+L  E CRVQQ  
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FTM 244
             FT+
Sbjct:   240 FTV 242

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1916513 Rfc3 "replication factor C (activator 1) 3" [Mus musculus (taxid:10090)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 129/242 (53%), Positives = 182/242 (75%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
             L +R+ +P+ E I  VL  + +KEGL LPS  A RLAEKS R+LR+A+L  E CRVQQ  
Sbjct:   180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FT 243
             FT
Sbjct:   240 FT 241

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005663 "DNA replication factor C complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006260 "DNA replication" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|F1P3C0 RFC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 128/242 (52%), Positives = 182/242 (75%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP  L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM LLR+++G 
Sbjct:     3 LWVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E+++  I A S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQS--ITAPSKK-KIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY A+CRLILCCNS SK+   I+SRC
Sbjct:   120 QLETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
             L++R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E+CRVQQ  
Sbjct:   180 LSVRVPAPSIEDICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESCRVQQYP 239

Query:   242 FT 243
             F+
Sbjct:   240 FS 241

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0046683 "response to organophosphorus" evidence=IEA

UNIPROTKB|Q2TBV1 RFC3 "Replication factor C subunit 3" [Bos taurus (taxid:9913)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 129/242 (53%), Positives = 181/242 (74%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
             L +R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E CRVQQ  
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FT 243
             FT
Sbjct:   240 FT 241

GO:0005634 "nucleus" evidence=IEA

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-020809-3 rfc3 "replication factor C (activator 1) 3" [Danio rerio (taxid:7955)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 129/247 (52%), Positives = 181/247 (73%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  LK LV   D PHLL YGP G+GKKT IM LLR+++G 
Sbjct:     3 LWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E+++  I   S+   LE+ T++S  H+E++PSDAG  DR V+QE+IK +A+++
Sbjct:    63 GVEKLRIEHQS--ITTPSKK-KLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              I +  +R FKV++L EVD+L+++AQH+LRRTMEKY A+CRLILCCNS+SKV   IRSRC
Sbjct:   120 QIQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
             L +R+  P+ E++  VL  + +KEGL LP   A ++AEKS R+LR+A+L  E CRVQQ  
Sbjct:   180 LAVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYP 239

Query:   242 FTMPSVD 248
             F+ P  D
Sbjct:   240 FS-PDQD 245

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

DICTYBASE|DDB_G0293702 rfc3 "replication factor C subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 119/242 (49%), Positives = 181/242 (74%)

Query:     1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             MLW+DKY+P +LD++  H DI+ NLK ++   D PHLL YGP G+GKKT I+A+L++++G
Sbjct:     1 MLWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60

Query:    61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             P A K+K++++T+K    S+NI  ++TT+SS  H+E++P +AG  DR V+Q +IKE+A++
Sbjct:    61 PNALKLKIDHRTFKHPTSSKNI--QITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQS 118

Query:   121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
              PID+     FK+++LNEVDKLS++AQH+LRRTMEKY+  CRLILCC+S++KV + I+SR
Sbjct:   119 PPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178

Query:   181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
             CL IR+ +P++E+I KVL  +A  E   LPS  A  +A++S  +LR A++  E+ + +Q 
Sbjct:   179 CLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQY 238

Query:   241 RF 242
              F
Sbjct:   239 PF 240

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003689 "DNA clamp loader activity" evidence=ISS

GO:0031391 "Elg1 RFC-like complex" evidence=ISS

GO:0031389 "Rad17 RFC-like complex" evidence=ISS

GO:0006298 "mismatch repair" evidence=ISS

GO:0006272 "leading strand elongation" evidence=ISS

GO:0005663 "DNA replication factor C complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2TBV1	RFC3_BOVIN	No assigned EC number	0.5139	0.9838	0.6853	yes	no
Q8R323	RFC3_MOUSE	No assigned EC number	0.5139	0.9838	0.6853	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XIX0457	hypothetical protein (353 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_I1046	proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (268 aa)				•	•	•	•		0.890
	estExt_Genewise1_v1.C_LG_IX3930	proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (265 aa)				•	•	•	•		0.884
	estExt_fgenesh4_pg.C_LG_III1005	replication factor C subunit (331 aa)			•	•	•	•	•	•	0.871
	gw1.V.2541.1	hypothetical protein (1081 aa)				•		•	•		0.866
	gw1.IX.5004.1	hypothetical protein (664 aa)				•	•		•		0.832
	grail3.0002016201	hypothetical protein (343 aa)			•	•	•	•	•	•	0.828
	estExt_fgenesh4_pg.C_LG_II0728	hypothetical protein (363 aa)			•	•	•	•	•	•	0.802
	eugene3.00660007	hypothetical protein (2222 aa)				•		•	•		0.764
	estExt_fgenesh4_pg.C_6730003	hypothetical protein (289 aa)			•	•	•	•	•	•	0.724
	gw1.XIII.413.1	annotation not avaliable (325 aa)				•	•		•		0.720

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
PRK00440	319	PRK00440, rfc, replication factor C small subunit;	1e-57
PRK12402	337	PRK12402, PRK12402, replication factor C small sub	1e-46
PLN03025	319	PLN03025, PLN03025, replication factor C subunit;	2e-35
PHA02544	316	PHA02544, 44, clamp loader, small subunit; Provisi	8e-27
PRK04132	846	PRK04132, PRK04132, replication factor C small sub	1e-26
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-18
COG2812	515	COG2812, DnaX, DNA polymerase III, gamma/tau subun	2e-17
TIGR00678	188	TIGR00678, holB, DNA polymerase III, delta' subuni	1e-16
PRK14953	486	PRK14953, PRK14953, DNA polymerase III subunits ga	1e-14
PRK14962	472	PRK14962, PRK14962, DNA polymerase III subunits ga	2e-13
COG2256	436	COG2256, MGS1, ATPase related to the helicase subu	7e-13
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	3e-12
TIGR02397	355	TIGR02397, dnaX_nterm, DNA polymerase III, subunit	6e-12
PRK14961	363	PRK14961, PRK14961, DNA polymerase III subunits ga	1e-11
PRK14970	367	PRK14970, PRK14970, DNA polymerase III subunits ga	2e-11
PRK07133	725	PRK07133, PRK07133, DNA polymerase III subunits ga	7e-11
PRK04132	846	PRK04132, PRK04132, replication factor C small sub	1e-10
pfam13177	161	pfam13177, DNA_pol3_delta2, DNA polymerase III, de	1e-10
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	1e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-10
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	4e-10
PRK14956	484	PRK14956, PRK14956, DNA polymerase III subunits ga	1e-09
PRK06305	451	PRK06305, PRK06305, DNA polymerase III subunits ga	1e-09
PRK14964	491	PRK14964, PRK14964, DNA polymerase III subunits ga	5e-09
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-08
smart00382	148	smart00382, AAA, ATPases associated with a variety	3e-08
PRK14958	509	PRK14958, PRK14958, DNA polymerase III subunits ga	3e-08
PRK06645	507	PRK06645, PRK06645, DNA polymerase III subunits ga	7e-08
PRK14957	546	PRK14957, PRK14957, DNA polymerase III subunits ga	4e-07
PRK14969	527	PRK14969, PRK14969, DNA polymerase III subunits ga	4e-07
PRK05564	313	PRK05564, PRK05564, DNA polymerase III subunit del	7e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-06
PRK08769	319	PRK08769, PRK08769, DNA polymerase III subunit del	1e-06
PRK08451	535	PRK08451, PRK08451, DNA polymerase III subunits ga	2e-06
PRK06090	319	PRK06090, PRK06090, DNA polymerase III subunit del	2e-06
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	2e-06
PRK09112	351	PRK09112, PRK09112, DNA polymerase III subunit del	4e-06
COG0470	230	COG0470, HolB, ATPase involved in DNA replication	4e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	9e-06
PRK14960	702	PRK14960, PRK14960, DNA polymerase III subunits ga	1e-05
PRK00080	328	PRK00080, ruvB, Holliday junction DNA helicase Ruv	2e-05
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	2e-05
COG2255	332	COG2255, RuvB, Holliday junction resolvasome, heli	2e-05
TIGR00602	637	TIGR00602, rad24, checkpoint protein rad24	3e-05
PRK06647	563	PRK06647, PRK06647, DNA polymerase III subunits ga	3e-05
pfam03215	490	pfam03215, Rad17, Rad17 cell cycle checkpoint prot	5e-05
PRK05896	605	PRK05896, PRK05896, DNA polymerase III subunits ga	5e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-05
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	6e-05
pfam05496	231	pfam05496, RuvB_N, Holliday junction DNA helicase	6e-05
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	1e-04
pfam13401	124	pfam13401, AAA_22, AAA domain	2e-04
PRK07471	365	PRK07471, PRK07471, DNA polymerase III subunit del	2e-04
PRK07940	394	PRK07940, PRK07940, DNA polymerase III subunit del	9e-04
TIGR02903	615	TIGR02903, spore_lon_C, ATP-dependent protease, Lo	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14955	397	PRK14955, PRK14955, DNA polymerase III subunits ga	0.002
PRK07132	299	PRK07132, PRK07132, DNA polymerase III subunit del	0.003
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.003
pfam07728	135	pfam07728, AAA_5, AAA domain (dynein-related subfa	0.004

>gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed

 Score =  185 bits (472), Expect = 1e-57
 Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 32/228 (14%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+++  ++I + LK  V E++ PHLLF GPPG+GK T  +AL R+++G 
Sbjct: 6   IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG- 64

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                    + W+                  N +EL+ SD    D  V++  IKE A+  
Sbjct: 65  ---------EDWRE-----------------NFLELNASDERGID--VIRNKIKEFARTA 96

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P+   G   FK++ L+E D L+ +AQ +LRRTME YS + R IL CN SSK+ + I+SRC
Sbjct: 97  PV---GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R +   +E + + L +IA+ EG+++       +   S   +R+AI
Sbjct: 154 AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAI 201

Length = 319

>gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed

 Score =  157 bits (399), Expect = 1e-46
 Identities = 78/271 (28%), Positives = 124/271 (45%), Gaps = 55/271 (20%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
            LW +KYRP  L+ ++   ++ + L + V   + PHLL  GPPGSGK   + AL R+++G
Sbjct: 3   PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ--------DRYV--- 109
                       W+                  N  E + +D   Q         R+    
Sbjct: 63  ----------DPWE-----------------NNFTEFNVADFFDQGKKYLVEDPRFAHFL 95

Query: 110 -------------VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156
                         + V+KE A  RP+       +K ++L+  + L  +AQ +LRR ME+
Sbjct: 96  GTDKRIRSSKIDNFKHVLKEYASYRPLSA----DYKTILLDNAEALREDAQQALRRIMEQ 151

Query: 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216
           YS +CR I+     SK+   IRSRCL +   +PT++++V VLE IA+ EG+         
Sbjct: 152 YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLEL 211

Query: 217 LAEKSNRSLRRAILSFETCRVQQLRFTMPSV 247
           +A  +   LR+AIL+ +T  +     TM + 
Sbjct: 212 IAYYAGGDLRKAILTLQTAALAAGEITMEAA 242

Length = 337

>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional

 Score =  127 bits (322), Expect = 2e-35
 Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 33/206 (16%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP  LD ++ ++D    L+ +  + + P+L+  GPPG+GK T I+AL  ++ GP 
Sbjct: 3   WVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 62

Query: 63  A-EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             E V                            +EL+ SD    D  VV+  IK  A+ +
Sbjct: 63  YKEAV----------------------------LELNASDDRGID--VVRNKIKMFAQKK 92

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                G+   K+++L+E D ++  AQ +LRRTME YS + R  L CN+SSK+ E I+SRC
Sbjct: 93  VTLPPGRH--KIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGL 207
             +R +  ++++I+  L  + + E +
Sbjct: 151 AIVRFSRLSDQEILGRLMKVVEAEKV 176

Length = 319

>gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional

 Score =  105 bits (263), Expect = 8e-27
 Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 42/209 (20%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGP-PGSGKKTLIMALLRQVFG 60
           +W  KYRP T+D+ I+     +  K +V +   P++L + P PG+GK T+  AL  +V  
Sbjct: 10  MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV-- 67

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
            GAE + V     +ID                                 V+  +   A  
Sbjct: 68  -GAEVLFVNGSDCRID--------------------------------FVRNRLTRFAST 94

Query: 121 RPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
             +   GK    V++++E D+L   +AQ  LR  ME YS +C  I+  N+ + + E +RS
Sbjct: 95  VSLTGGGK----VIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150

Query: 180 RCLNIRINSPT-EEQIVKVLEFIAKKEGL 207
           RC  I    PT EEQI  + + I + +G+
Sbjct: 151 RCRVIDFGVPTKEEQIEMMKQMIVRCKGI 179

Length = 316

>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional

 Score =  107 bits (269), Expect = 1e-26
 Identities = 56/137 (40%), Positives = 83/137 (60%), Gaps = 5/137 (3%)

Query: 93  NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
           N +EL+ SD    +  V++E +KE A+ +PI   G   FK++ L+E D L+++AQ +LRR
Sbjct: 598 NFLELNASDERGIN--VIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRR 652

Query: 153 TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212
           TME +S++ R IL CN SSK+ E I+SRC   R     +E I K L +IA+ EGL+L   
Sbjct: 653 TMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEE 712

Query: 213 FATRLAEKSNRSLRRAI 229
               +   +   +RRAI
Sbjct: 713 GLQAILYIAEGDMRRAI 729

Length = 846

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 52/240 (21%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE--QDCPH--LLFYGPPGSGKKTLIMALLR 56
           M WV+KYRPKTL  V+ ++   + L++ +    +  P   LL YGPPG GK +L  AL  
Sbjct: 2   MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHAL-- 59

Query: 57  QVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116
                                 + +   E+        +EL+ SD   +   V++ V  E
Sbjct: 60  ----------------------ANDYGWEV--------IELNASD--QRTADVIERVAGE 87

Query: 117 MAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLRRTMEKYSASCRLILCCN---S 169
            A +  +   G R  K+++L+EVD +     R    ++   ++K  A   +IL  N    
Sbjct: 88  AATSGSL--FGARR-KLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYD 142

Query: 170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            S     +R+ CL I     +   IV VL+ I +KEG++        +AE+S   LR AI
Sbjct: 143 PSLRE--LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAI 200

Length = 482

>gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

 Score = 80.5 bits (199), Expect = 2e-17
 Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 30/231 (12%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGK----KTLIMALLRQVFG 60
           KYRPKT D V+  + + + L   +      H  LF GP G GK    + L  AL  +  G
Sbjct: 9   KYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-G 67

Query: 61  PGAEKVKVENKTWKIDAGSRNIDL-ELTTLSSANHVELSPSDAGFQDRYVVQEV--IKEM 117
           P AE         +I+ G   ID+ E+   S                   V ++  I E 
Sbjct: 68  PTAEPCGKCISCKEINEG-SLIDVIEIDAAS----------------NTGVDDIREIIEK 110

Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
               P  ++G+  +KV +++EV  LS++A ++L +T+E+  +  + IL      K+   I
Sbjct: 111 VNYAP--SEGR--YKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
            SRC          E+I K L  I  KEG+ +     + +A  +  SLR A
Sbjct: 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDA 217

Length = 515

>gnl|CDD|233087 TIGR00678, holB, DNA polymerase III, delta' subunit

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 37/203 (18%)

Query: 35  PH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT---WKIDAGSRNIDLELTTLS 90
            H  LF GP G GK+ L +AL + +        +   +      I+AG            
Sbjct: 14  AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAG------------ 61

Query: 91  SANH---VELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE 145
             NH     L P            V+E+++ +++  P ++    G +V+++ + ++++  
Sbjct: 62  --NHPDLHRLEPEGQSIKVDQ---VRELVEFLSR-TPQES----GRRVVIIEDAERMNEA 111

Query: 146 AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
           A ++L +T+E+   +   IL   S  K+   IRSRC  +     +EE +++ L       
Sbjct: 112 AANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWL------I 165

Query: 206 GLQLPSGFATRLAEKSNRSLRRA 228
              +    A  L   +  S   A
Sbjct: 166 RQGISEEAAELLLALAGGSPGAA 188

This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau [DNA metabolism, DNA replication, recombination, and repair]. Length = 188

>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau; Provisional

 Score = 72.2 bits (177), Expect = 1e-14
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 32/232 (13%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLR-------Q 57
           KYRPK   +VI  + + + LK  V  Q   H  +F GP G+GK T+   L +       Q
Sbjct: 9   KYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQ 68

Query: 58  VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKE 116
              P  +    EN   +ID GS   DL          +E+ + S+ G  D       +++
Sbjct: 69  EGEPCGK---CEN-CVEIDKGSF-PDL----------IEIDAASNRGIDD----IRALRD 109

Query: 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
                PI  KGK  +KV +++E   L++EA ++L +T+E+       ILC     K+   
Sbjct: 110 AVSYTPI--KGK--YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPT 165

Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
           I SRC     + PT+EQI + L+ I  +E ++        LA+ S   +R A
Sbjct: 166 ILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDA 217

Length = 486

>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 22/232 (9%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVF---GP 61
           KYRPKT  +V+    + + +   + +    H  +F GP G+GK T+   L + +      
Sbjct: 7   KYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRK 66

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G E          ID G+    +EL   S+    E+                I++    R
Sbjct: 67  GVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRK--------------IRDAVGYR 112

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P++ K    +KV +++EV  L++EA ++L +T+E+  +    +L   +  KV   I SRC
Sbjct: 113 PMEGK----YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRC 168

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
             I   + ++E I+K L+ +A+ EG+++     + +A++++  LR A+   E
Sbjct: 169 QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLE 220

Length = 472

>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

 Score = 66.9 bits (164), Expect = 7e-13
 Identities = 58/243 (23%), Positives = 97/243 (39%), Gaps = 58/243 (23%)

Query: 5   DKYRPKTLDQVIVHQDIAQN---LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           ++ RPK+LD+V+  + +      L++ V       ++ +GPPG+GK TL   +       
Sbjct: 16  ERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLI------- 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                          AG+ N   E           LS   +G +D   ++E+I+E  KNR
Sbjct: 69  ---------------AGTTNAAFE----------ALSAVTSGVKD---LREIIEEARKNR 100

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC----NSSSKVTEAI 177
                G+R   +L L+E+ + ++  Q +L   +E       +IL      N S ++  A+
Sbjct: 101 ---LLGRR--TILFLDEIHRFNKAQQDALLPHVENG----TIILIGATTENPSFELNPAL 151

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA-------TRLAEKSNRSLRRAIL 230
            SR     +   + E I K+L+     E   L              L   SN   RRA+ 
Sbjct: 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALN 211

Query: 231 SFE 233
             E
Sbjct: 212 LLE 214

Length = 436

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 65.1 bits (160), Expect = 3e-12
 Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 54/235 (22%)

Query: 5   DKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           ++ RPKTLD+V+  + +    + L++++       ++ +GPPG+GK TL   +       
Sbjct: 4   ERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARII------- 56

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                            +   D             LS   +G +D   ++EVI+E  + R
Sbjct: 57  -----------------AGATDAPF--------EALSAVTSGVKD---LREVIEEARQRR 88

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC----NSSSKVTEAI 177
              + G+R   +L ++E+ + ++  Q +L   +E       + L      N S +V  A+
Sbjct: 89  ---SAGRR--TILFIDEIHRFNKAQQDALLPHVEDG----TITLIGATTENPSFEVNPAL 139

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEG---LQLPSGFATRLAEKSNRSLRRAI 229
            SR     +   +EE I ++L+   + +    ++L       LA  +N   RRA+
Sbjct: 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRAL 194

Length = 413

>gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 28/231 (12%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMAL-LRQVFGP 61
           KYRP+T + VI  + I Q LK  +      H  LF GP G+GK ++  I A  L    GP
Sbjct: 7   KYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGP 66

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP-SDAGFQDRYVVQEV--IKEMA 118
             E         +I++GS ++D+          +E+   S+ G      V ++  I +  
Sbjct: 67  DGEPCNECESCKEINSGS-SLDV----------IEIDAASNNG------VDDIREILDNV 109

Query: 119 KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
           K  P   K    +KV +++EV  LS+ A ++L +T+E+       IL      K+   I 
Sbjct: 110 KYAPSSGK----YKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATIL 165

Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           SRC          E IV+ L+ I  KEG+++       +A  ++ SLR A+
Sbjct: 166 SRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDAL 216

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis [DNA metabolism, DNA replication, recombination, and repair]. Length = 355

>gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 40/237 (16%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
           K+RP+    +I  + I   +   ++     H  L  G  G GK T+              
Sbjct: 9   KWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIA------------- 55

Query: 65  KVKVENKTWKIDAGSRNIDLELTTL-----------SSANHVELSPSDAGFQDRYVVQEV 113
                    ++ A S N    +T+                 ++L   DA    R  V+E 
Sbjct: 56  ---------RLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAA--SRTKVEE- 103

Query: 114 IKEMAKN-RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172
           ++E+  N     +K +  FKV +++EV  LSR + ++L +T+E+     + IL      K
Sbjct: 104 MREILDNIYYSPSKSR--FKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161

Query: 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           + + I SRCL  ++   +EE+I   L++I  KE +         +A  ++ S+R A+
Sbjct: 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDAL 218

Length = 363

>gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 62/230 (26%), Positives = 97/230 (42%), Gaps = 30/230 (13%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP+T D V+    I   L   +        LLF GP G GK T    L R++  PG  
Sbjct: 10  KYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPG-- 67

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD-RYVVQEVIKEMAKNRPI 123
                      D  + +    +  L +A       S+    D R ++ +V       R  
Sbjct: 68  ----------YDDPNEDFSFNIFELDAA-------SNNSVDDIRNLIDQV-------RIP 103

Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
              GK  +K+ +++EV  LS  A ++  +T+E+  A    IL      K+   I SRC  
Sbjct: 104 PQTGK--YKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 161

Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
                 T + I + L  IA KEG++        +A+K++ +LR A+  F+
Sbjct: 162 FDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFD 211

Length = 367

>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau; Validated

 Score = 61.4 bits (149), Expect = 7e-11
 Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 41/239 (17%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALL---- 55
              KYRPKT D ++    I Q LK ++      H  LF GP G+GK ++  I A      
Sbjct: 8   LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67

Query: 56  --RQVFGPGAEKVKVENKTWKI---DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVV 110
               +  P  E ++  N +  I   DA S N                     G  +   +
Sbjct: 68  HKTDLLEPCQECIENVNNSLDIIEMDAASNN---------------------GVDE---I 103

Query: 111 QEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170
           +E + E  KN P  +K    +K+ +++EV  LS+ A ++L +T+E+       IL     
Sbjct: 104 RE-LIENVKNLPTQSK----YKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158

Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            K+   I SR         +E++IV  LEFI +KE +         +A+ S+ SLR A+
Sbjct: 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDAL 217

Length = 725

>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 3  WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGK 47
          WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK
Sbjct: 9  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 53

Length = 846

>gnl|CDD|221959 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 19/176 (10%)

Query: 18  HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
              + + LK  + +    H  LF GP G GK  L +   + +F         EN      
Sbjct: 2   QPKVIKLLKNSIKKNKLSHAYLFSGPDGVGKLELALEFAKALFC--------ENPQDDEP 53

Query: 77  AGSRNIDLELTTLSSANHVELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVL 134
            G       +   +  + + + P            ++E+I+E +K +P   +GK+  KV 
Sbjct: 54  CGECKSCKRIENGNHPDVIIIEPEGKSIKIDQ---IRELIEEFSK-KPF--EGKK--KVY 105

Query: 135 VLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPT 190
           ++ + +K++  A ++L +T+E+   +   IL  ++ +K+   IRSRC  I     +
Sbjct: 106 IIEDAEKMTESAANALLKTLEEPPENTYFILLTSNPNKLLPTIRSRCQVINFKPLS 161

DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA. Length = 161

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 39/177 (22%)

Query: 16  IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75
           +  ++  + L++ +      +LL YGPPG+GK TL  A+  ++F PG             
Sbjct: 1   VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPG------------- 47

Query: 76  DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLV 135
                           A  + L+ SD    +  VV E+          +   K    VL 
Sbjct: 48  ----------------APFLYLNASD--LLEGLVVAELFGHFLVRLLFELAEKAKPGVLF 89

Query: 136 LNEVDKLSREAQHSLRRTMEKYS------ASCRLILCCN--SSSKVTEAIRSRCLNI 184
           ++E+D LSR AQ++L R +E  +       + R+I   N      +  A+  R    
Sbjct: 90  IDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIR 146

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 23/228 (10%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVF----G 60
           K+R +T  +++  + + Q L+  + E    H  LF GP G GK +    L + V      
Sbjct: 9   KWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTND 68

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P             I  G   +D+     +S   V+    DA           I E  + 
Sbjct: 69  PKGRPCGTCEMCRAIAEG-SAVDVIEMDAASHTSVD----DA---------REIIERVQF 114

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RP   +    +KV +++EV  LS  A ++L +T+E+       IL      KV   I SR
Sbjct: 115 RPALAR----YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR 170

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
           C     +  +   +   L  IA  EG+ L  G    +A  +  S+R A
Sbjct: 171 CQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDA 218

Length = 585

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 59.0 bits (142), Expect = 4e-10
 Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 24/229 (10%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RPKT   ++  + + + L+  + E    H  L  G  G GK T+   L + +      
Sbjct: 9   KWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKN 120
             E   V     +IDAG R +DL          +E+ + S+ G  +   ++EV+ E A+ 
Sbjct: 69  HGEPCGVCQSCTQIDAG-RYVDL----------LEIDAASNTGIDN---IREVL-ENAQY 113

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
            P  T GK  +KV +++EV  LS+ A +++ +T+E+     + IL      KV   + SR
Sbjct: 114 AP--TAGK--YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           CL   + + T +Q+   L  +   E +         L   +  S+R A+
Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDAL 218

Length = 709

>gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 21/230 (9%)

Query: 6   KYRPKTLDQVIVHQDIA-QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGA 63
           KYRP+    VI HQD+A   L+  +      H  +F+GP G GK T+   L        A
Sbjct: 11  KYRPQFFRDVI-HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARIL--------A 61

Query: 64  EKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRP 122
           +++  EN             LE+T   S++ +E+ + S+ G ++       I+E+  N  
Sbjct: 62  KRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIEN-------IRELRDNVK 114

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
               G + +KV +++EV  L+ ++ ++L +T+E+  A    IL      K+ E I SRC 
Sbjct: 115 FAPMGGK-YKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
           +          +    E + K E +Q        +A+K + S+R  +LSF
Sbjct: 174 DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRD-MLSF 222

Length = 484

>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 21/227 (9%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP+T  +++    +   LK  +      H  LF G  G+GK TL      ++F   A+
Sbjct: 10  KYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLA-----RIF---AK 61

Query: 65  KVKVENKTWKIDAGSR-NIDLELTTLSSANHVELS-PSDAGFQD-RYVVQEVIKEMAKNR 121
            +  +N T   +  ++     E+++ +S + +E+   S  G +D R + + V+   +K+R
Sbjct: 62  ALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSR 121

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    +K+ +++EV  L++EA +SL +T+E+     +  L      K+   I SRC
Sbjct: 122 ---------YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRC 172

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
             + +    EE I+  L  IAK+EG++        +A  +  SLR A
Sbjct: 173 QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDA 219

Length = 451

>gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 42/242 (17%)

Query: 6   KYRPKTLDQVIVHQDI-------AQNLKKLVTEQDCPHLLFYGPPGSGKKTL--IMAL-L 55
           KYRP +    +V QD+       A  L K+        +L  G  G GK T   I++L L
Sbjct: 6   KYRPSSFKD-LVGQDVLVRILRNAFTLNKIPQS-----ILLVGASGVGKTTCARIISLCL 59

Query: 56  RQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH---VEL-SPSDAGFQDRYVVQ 111
               GP ++             G+ +      ++ ++NH   +E+ + S+    D  V+ 
Sbjct: 60  NCSNGPTSDP-----------CGTCH---NCISIKNSNHPDVIEIDAASNTSVDDIKVIL 105

Query: 112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171
           E    +    PI +K    FKV +++EV  LS  A ++L +T+E+ +   + IL      
Sbjct: 106 ENSCYL----PISSK----FKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK 157

Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
           K+   I SRC    +     +++V+ L  IAKKE ++        +AE S+ S+R A+  
Sbjct: 158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFL 217

Query: 232 FE 233
            E
Sbjct: 218 LE 219

Length = 491

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 24/233 (10%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKT---LIMALLRQVFGP 61
           KYRP+T   +   + +++ L+  +      H  LF G  G GK +   ++   L    G 
Sbjct: 9   KYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGL 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKN 120
            AE   V     +I  G            S +  E+   S+ G  D   ++E ++E  K 
Sbjct: 69  TAEPCNVCPPCVEITEGR-----------SVDVFEIDGASNTGVDD---IRE-LRENVKY 113

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
            P     +  +K+ +++EV  LS  A ++L +T+E+     + I       KV   I SR
Sbjct: 114 LP----SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
           C          ++IV  L +IA +EG+ +       +A K + S+R ++ + +
Sbjct: 170 CQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLD 222

Length = 576

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 28/159 (17%)

Query: 36  HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95
            +L  GPPGSGK TL  AL R++  PG   + +            + +  L  +     +
Sbjct: 4   VILIVGPPGSGKTTLARALARELGPPGGGVIYI------------DGEDILEEVLDQLLL 51

Query: 96  ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR--- 152
            +           +   +   +A+    D        VL+L+E+  L    Q +L     
Sbjct: 52  IIVGGKKASGSGELRLRLALALARKLKPD--------VLILDEITSLLDAEQEALLLLLE 103

Query: 153 -----TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRI 186
                 + K   +  +IL  N    +  A+  R  + RI
Sbjct: 104 ELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRI 142

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|184922 PRK14958, PRK14958, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 18/226 (7%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           K+RP+   +VI    + + L   + +Q   H  LF G  G GK T+   L          
Sbjct: 9   KWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRIL---------- 58

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP-I 123
             K  N    + A   N       +      +L   DA  + +    E  +E+  N P  
Sbjct: 59  -AKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKV---EDTRELLDNIPYA 114

Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
            TKG+  FKV +++EV  LS  + ++L +T+E+  +  + IL      K+   + SRCL 
Sbjct: 115 PTKGR--FKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQ 172

Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             +      QI    + + K+E ++  +     LA  +N S+R A+
Sbjct: 173 FHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDAL 218

Length = 509

>gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 16/230 (6%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLK-KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +  KYRP    ++   + + + L   ++ ++     L  G  G GK T    + + V   
Sbjct: 11  FARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV--- 67

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--IKEMAK 119
               +  EN T K      N      + ++ NH ++   DA    +  V ++  I E A+
Sbjct: 68  NCSALITENTTIKTCEQCTNC----ISFNNHNHPDIIEIDAA--SKTSVDDIRRIIESAE 121

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
            +P+  K     K+ +++EV  LS+ A ++L +T+E+       I       K+   I S
Sbjct: 122 YKPLQGK----HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIIS 177

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           RC    +   + E+I K+LE+I K+E L+        +A KS  S R A+
Sbjct: 178 RCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAV 227

Length = 507

>gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.1 bits (119), Expect = 4e-07
 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 16/225 (7%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP++  +V   Q    +L   +  Q   H  LF G  G GK TL   L + +      
Sbjct: 9   KYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGV 68

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
             +  NK     A + N  ++L  + +A+             R  V+E  + +   + + 
Sbjct: 69  TAEPCNKCENCVAINNNSFIDLIEIDAAS-------------RTGVEETKEILDNIQYMP 115

Query: 125 TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184
           ++G+  +KV +++EV  LS+++ ++L +T+E+     + IL      K+   I SRC+ +
Sbjct: 116 SQGR--YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQL 173

Query: 185 RINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            +   ++  I   L+ I  KE +         +A  +  SLR A+
Sbjct: 174 HLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDAL 218

Length = 546

>gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 22/228 (9%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA-LLRQVFGP 61
           K+RPK+  +++  + + + L   + +Q   H  LF G  G GK TL  I+A  L    G 
Sbjct: 9   KWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGV 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +ID+G R +DL          +E+   DA    +      + + A+  
Sbjct: 69  TATPCGVCSACLEIDSG-RFVDL----------IEV---DAASNTQVDAMRELLDNAQYA 114

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P  T+G+  FKV +++EV  LS+ A +++ +T+E+     + IL      K+   + SRC
Sbjct: 115 P--TRGR--FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 170

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   +       IV  L+ I ++E +   +     LA  +  S+R A+
Sbjct: 171 LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDAL 218

Length = 527

>gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 40/191 (20%), Positives = 90/191 (47%), Gaps = 33/191 (17%)

Query: 15  VIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73
           +I H++I   +K  + +    H  +  G  G GK  L   +  ++ G   ++  V+   +
Sbjct: 6   IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEF 65

Query: 74  KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKV 133
           K     ++I ++                        ++ +I+E+ K +P +  G +  KV
Sbjct: 66  KP-INKKSIGVDD-----------------------IRNIIEEVNK-KPYE--GDK--KV 96

Query: 134 LVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ 193
           +++   +K++ +AQ++  +T+E+      +IL C +  ++ + I+SRC   ++N  ++E+
Sbjct: 97  IIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEE 156

Query: 194 IVKVLEFIAKK 204
           I K   FI+ K
Sbjct: 157 IEK---FISYK 164

Length = 313

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 64/254 (25%), Positives = 101/254 (39%), Gaps = 49/254 (19%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPG 62
           KYRP T + V+  + +   LK  +      H  LF GP G GK T   I A         
Sbjct: 10  KYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLT 69

Query: 63  AE----------KVKVENKTWKI---DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV 109
           A+              E +++ I   DA S N   ++  L     +E        Q R  
Sbjct: 70  ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNL-----IE--------QVRIP 116

Query: 110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169
            Q               GK  +K+ +++EV  LS+ A ++  +T+E+  +    IL    
Sbjct: 117 PQ--------------IGK--YKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160

Query: 170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             K+   I SRC     N      IV  L+++A KEG+         +A+K++  +R A+
Sbjct: 161 KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDAL 220

Query: 230 LSFETCRVQQLRFT 243
             F+    Q + FT
Sbjct: 221 SIFD----QVVSFT 230

Length = 614

>gnl|CDD|181551 PRK08769, PRK08769, DNA polymerase III subunit delta'; Validated

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 37  LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96
           LL  GP G GK+ + +AL   V   G +      +T ++ A   + DL+L        V 
Sbjct: 29  LLICGPEGLGKRAVALALAEHVLASGPDPA-AAQRTRQLIAAGTHPDLQL--------VS 79

Query: 97  LSPSDAGFQDRY-VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME 155
             P+  G + R  +V E ++E+++   + T      +V++++  D ++R A ++L +T+E
Sbjct: 80  FIPNRTGDKLRTEIVIEQVREISQKLAL-TPQYGIAQVVIVDPADAINRAACNALLKTLE 138

Query: 156 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ 193
           + S    L L     +++   IRSRC  +    P   +
Sbjct: 139 EPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHE 176

Length = 319

>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 56/242 (23%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGK--------KTLIMALLR 56
           KYRPK  D++I  + +++ L   +      H  LF G  GSGK        + L+     
Sbjct: 7   KYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQ-- 64

Query: 57  QVFGPGAEKVKV--------ENKTWKI---DAGS-RNIDLELTTLSSANHVELSPSDAGF 104
              GP +             EN+   I   DA S R ID                     
Sbjct: 65  ---GPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGID--------------------- 100

Query: 105 QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLI 164
            D   ++E+I E  K +P  +  +  FK+ +++EV  L++EA ++L +T+E+  +  + I
Sbjct: 101 -D---IRELI-EQTKYKP--SMAR--FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151

Query: 165 LCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS 224
           L      K+   I SR  + R     +  I+  L+ I +KEG+         LA   N S
Sbjct: 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGS 211

Query: 225 LR 226
           LR
Sbjct: 212 LR 213

Length = 535

>gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP 189
           G+++ V+   D ++  A ++L +T+E+ + +C  +L  ++  ++   I SRC    +  P
Sbjct: 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPP 167

Query: 190 TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS 221
           +  Q ++ L    K +G+ +P+ +A +L   S
Sbjct: 168 STAQAMQWL----KGQGITVPA-YALKLNMGS 194

Length = 319

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 30/232 (12%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQV---FGP 61
           +YRP+T  +V   + +   L +   E    P  LF G  G GK T+     + +     P
Sbjct: 9   RYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAP 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL----SPSDAGFQDRYVVQEVIKEM 117
             E      +  K+  G               HV++      S+ G  D   ++E I   
Sbjct: 69  TGEPCNTCEQCRKVTQG--------------MHVDVVEIDGASNRGIDDAKRLKEAIGYA 114

Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
               P++ +    +KV +++E   L+REA ++L +T+E+  A    +L      K    I
Sbjct: 115 ----PMEGR----YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            SRC +      +E  +   L  +  +EG+         +A ++  S+R ++
Sbjct: 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSM 218

Length = 624

>gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 25/234 (10%)

Query: 9   PKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVK 67
           P    ++  H++    L +   E    H LLF GP G GK TL   L   +     +  +
Sbjct: 19  PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHP-DPAE 77

Query: 68  VENKTWKIDAGS---RNIDLELTTLSSANHVELS-PSD---AGFQDRYVVQEVIKEMAK- 119
                   D  S   R I       +  N + ++ P D     F+    V E I+ +   
Sbjct: 78  APETLADPDPASPVWRQI----AQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHF 132

Query: 120 -NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
            ++   T G   +++++++  D ++R A +++ +T+E+  A    IL  +SS ++   IR
Sbjct: 133 LSQ---TSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIR 189

Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR--LAEKSNRSLRRAIL 230
           SRC  I +    ++++ K L  +    G    S       L ++S  S+R+A+L
Sbjct: 190 SRCQPISLKPLDDDELKKALSHL----GSSQGSDGEITEALLQRSKGSVRKALL 239

Length = 351

>gnl|CDD|223546 COG0470, HolB, ATPase involved in DNA replication [DNA replication, recombination, and repair]

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216
              + R IL  N  SK+   IRSRC  IR   P        LE IA  E   L       
Sbjct: 41  PPKNTRFILITNDPSKILPTIRSRCQRIRFKPP------SRLEAIAWLEDQGL-----EE 89

Query: 217 LAEKSNRSLRRAILSFETCRVQQ 239
           +A  +    R+AI   +     +
Sbjct: 90  IAAVAEGDARKAINPLQALAALE 112

Length = 230

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 33/236 (13%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPG 62
           K+RP+    ++  + + + L   + +Q   H  LF G  G GK TL  I+A      G  
Sbjct: 9   KWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGAD 68

Query: 63  ------AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116
                 A+         +IDAG R +D          ++E+   DA   +R V      E
Sbjct: 69  GEGGITAQPCGQCRACTEIDAG-RFVD----------YIEM---DAA-SNRGV-----DE 108

Query: 117 MAK--NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
           MA+  ++ +       FKV +++EV  L+  A +++ +T+E+     + IL      K+ 
Sbjct: 109 MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168

Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL-AEKSNRSLRRAI 229
             + SRCL   +       IV  L+ I  +EG+      A RL A+ +  S+R A+
Sbjct: 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDAL 223

Length = 700

>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 26/230 (11%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP+  ++++    +++ L   +      H  LF G  G GK T+              
Sbjct: 8   KYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTI-------------- 53

Query: 65  KVKVENKTWKIDAGSRNIDLEL-TTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKN 120
             ++  K    + G  +   E+  T  + N    ++L   DA  + +    E  +E+  N
Sbjct: 54  -ARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKV---EDTRELLDN 109

Query: 121 RP-IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
            P   T+G+  FKV +++EV  LS  + ++L +T+E+     + +       K+   + S
Sbjct: 110 VPYAPTQGR--FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS 167

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           RCL   +     ++I K L  I +KE +        ++AE +  SLR A+
Sbjct: 168 RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDAL 217

Length = 702

>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 16/72 (22%)

Query: 8  RPKTLDQVIVHQDIAQNLK------KLVTEQ-DCPHLLFYGPPGSGKKTL--IMAL---- 54
          RPK+LD+ I  + + +NLK      K   E  D  H+L YGPPG GK TL  I+A     
Sbjct: 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALD--HVLLYGPPGLGKTTLANIIANEMGV 77

Query: 55 -LRQVFGPGAEK 65
           +R   GP  EK
Sbjct: 78 NIRITSGPALEK 89

Length = 328

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 35/240 (14%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPGAE 64
           RP T D+V+  + + + L   + +    H  LF GP G GK T   ++A+     G   +
Sbjct: 9   RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPK 68

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
                     +  G+    LE+   +S N VE         D   V++ ++E     P+ 
Sbjct: 69  PCGECESCLAVRRGAHPDVLEIDA-ASNNSVE---------D---VRD-LREKVLLAPL- 113

Query: 125 TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184
              + G KV +L+E   +S+ A ++L +T+E+       IL      K+   I SR  + 
Sbjct: 114 ---RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHF 170

Query: 185 RINSPTEEQIVKVLEFIAKKEG-------LQLPSGFATRLAEKSNR---SLRRAILSFET 234
           R    TEE+I   L  + + EG       LQL      RLA+ + R   SL   +L+  T
Sbjct: 171 RFRRLTEEEIAGKLRRLLEAEGREAEPEALQL----VARLADGAMRDAESLLERLLALGT 226

Length = 504

>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 16/72 (22%)

Query: 8  RPKTLDQVIVHQDIAQNLK------KLVTEQ-DCPHLLFYGPPGSGKKTL--IMAL---- 54
          RPKTLD+ I  + + + L+      K   E  D  H+L +GPPG GK TL  I+A     
Sbjct: 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALD--HVLLFGPPGLGKTTLAHIIANELGV 78

Query: 55 -LRQVFGPGAEK 65
           L+   GP  EK
Sbjct: 79 NLKITSGPALEK 90

Length = 332

>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 2   LWVDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQDCPH--LLFYGPPGSGKKTLIMAL 54
            WV+KY+P+T  ++ VH+    ++   LK  V E   P   LL  GP G GK T I  L
Sbjct: 73  PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENA-PKRILLITGPSGCGKSTTIKIL 130

All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 637

>gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 30/236 (12%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMAL---LRQVFGP 61
           K RP+  + +     + + LK  +      +  +F GP G GK +   A    L  V GP
Sbjct: 9   KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS-PSDAGFQD-RYVVQEVIKEMAK 119
                   +    ID  +           S + +E+   S+   QD R + +E++   A 
Sbjct: 69  TPMPCGECSSCKSIDNDN-----------SLDVIEIDGASNTSVQDVRQIKEEIMFPPAS 117

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
           +R         ++V +++EV  LS  A ++L +T+E+       I       K+   I+S
Sbjct: 118 SR---------YRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168

Query: 180 RC--LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
           RC   N R+ S   E+I  +L+ +  ++ ++        +A KS  S+R A   F+
Sbjct: 169 RCQHFNFRLLSL--EKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFD 222

Length = 563

>gnl|CDD|217429 pfam03215, Rad17, Rad17 cell cycle checkpoint protein

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 2  LWVDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQDCPHLLFY--GPPGSGKKTLIMAL 54
          LW +KY+P+  D++ +H+    ++   LK +  E +   L+    GP G GK T +  L
Sbjct: 8  LWTEKYKPRRRDELAIHKKKIAEVDHWLKAVFLESN-KQLILLLTGPSGCGKSTTVKVL 65

Length = 490

>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 20/224 (8%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP    Q+I  + I + L   +      H  +F GP G GK ++            A+
Sbjct: 9   KYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIF--------AK 60

Query: 65  KVKVENKTWKIDA-GSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRP 122
            +   N     D   S ++   + T  S + VEL + S+ G  +   ++ +I +     P
Sbjct: 61  AINCLNPK-DGDCCNSCSVCESINTNQSVDIVELDAASNNGVDE---IRNII-DNINYLP 115

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
              K    +KV +++E   LS  A ++L +T+E+       I       K+   I SRC 
Sbjct: 116 TTFK----YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQ 171

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226
                     ++ ++L+ IAKKE +++      ++A+ ++ SLR
Sbjct: 172 RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLR 215

Length = 605

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 37/238 (15%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPG 62
           KYRP++  +++  + + Q L   +T+Q   H  LF G  G GK T+  I+A      GP 
Sbjct: 9   KYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPD 68

Query: 63  ------AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--I 114
                 A    V      ID+G R +D   T L +A       S+ G      V EV  +
Sbjct: 69  GQGGITATPCGVCQACRDIDSG-RFVD--YTELDAA-------SNRG------VDEVQQL 112

Query: 115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
            E A  +P+  +    FKV +++EV  L+  A +++ +T+E+     + +L      KV 
Sbjct: 113 LEQAVYKPVQGR----FKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168

Query: 175 EAIRSRCL--NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR-SLRRAI 229
             + SRCL  N+R  +P  E +++ L  +   E +      A RL  ++ R S+R A+
Sbjct: 169 VTVLSRCLQFNLRPMAP--ETVLEHLTQVLAAENVPAEPQ-ALRLLARAARGSMRDAL 223

Length = 618

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 55/169 (32%)

Query: 37  LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96
           LL YGPPG+GK TL  A+ ++                                  A  +E
Sbjct: 1   LLLYGPPGTGKTTLAKAVAKE--------------------------------LGAPFIE 28

Query: 97  LSPSDAGFQDRYVVQEVIKEMAKN--RPIDTKGKRGFKVLVLNEVDKL-----------S 143
           +S S+       +V + + E  K      +   K    V+ ++E+D L           S
Sbjct: 29  ISGSE-------LVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSES 81

Query: 144 REAQHSLRRTMEKYSASCR---LILCCNSSSKVTEAIRSRCLNIRINSP 189
           R   + L   ++ +++S     +I   N   K+  A+     +  I  P
Sbjct: 82  RRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRIIEFP 130

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus

 Score = 42.4 bits (101), Expect = 6e-05
 Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 16/72 (22%)

Query: 8  RPKTLDQVIVHQDIAQNLK------KLVTEQ-DCPHLLFYGPPGSGKKTL--IMAL---- 54
          RP+ LD+ I  + + +NLK      K   E  D  H+L YGPPG GK TL  I+A     
Sbjct: 19 RPRRLDEYIGQEKVKENLKIFIEAAKKRGEALD--HVLLYGPPGLGKTTLANIIANEMGV 76

Query: 55 -LRQVFGPGAEK 65
           +R   GP  EK
Sbjct: 77 NIRITSGPALEK 88

The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 129 RG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRIN 187
           RG FKV +++EV  LSR + ++L +T+E+     + +L      K+   + SRCL   + 
Sbjct: 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLK 176

Query: 188 SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
           S T+++I   L  I  +E L   +   T LA+ +N S+R A LS
Sbjct: 177 SLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDA-LS 219

Length = 944

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 23/136 (16%)

Query: 32  QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK-TWKIDAGSRNIDLELTTLS 90
           +     +  G  GSGK TL+  L RQ+       V+  +  T K        DL L  + 
Sbjct: 2   RGAGIGVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLGTPK--------DL-LRKIL 52

Query: 91  SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSL 150
            A  + LS             E+++ +     +D   +RG  +L+++E   LS EA   L
Sbjct: 53  RALGLPLSGGTT--------AELLEAI-----LDALKRRGRPLLIIDEAQHLSLEALEEL 99

Query: 151 RRTMEKYSASCRLILC 166
           R   +      ++IL 
Sbjct: 100 RDLYDLSEKGIQVILV 115

Length = 124

>gnl|CDD|236022 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 30/207 (14%)

Query: 38  LFYGPPGSGKKTLIMALLRQVF---GPGAEKVKVENKTWKIDAG---SRNIDLELTTLSS 91
           L  GP G GK TL   + R +     PG +       +  ID     +R I       + 
Sbjct: 45  LIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----AAGAH 100

Query: 92  AN--HVELSPSDAG--FQDRYVVQEVIKEMAKNRPID-----TKGKRGFKVLVLNEVDKL 142
                +E S ++ G   +    V EV       R +      T  + G++V++++  D++
Sbjct: 101 GGLLTLERSWNEKGKRLRTVITVDEV-------RELISFFGLTAAEGGWRVVIVDTADEM 153

Query: 143 SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIA 202
           +  A ++L + +E+  A    +L  ++ +++   IRSRC  +R+     E ++  L    
Sbjct: 154 NANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALA--- 210

Query: 203 KKEGLQLPSGFATRLAEKSNRSLRRAI 229
              G  LP      LA  +  S+ RA+
Sbjct: 211 -AAGPDLPDDPRAALAALAEGSVGRAL 236

Length = 365

>gnl|CDD|236134 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 114 IKEM------AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC 167
           + E+      A  RP  + G+  ++++V+ + D+L+  A ++L + +E+       +LC 
Sbjct: 99  VDEVRELVTIAARRP--STGR--WRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154

Query: 168 NSSSKVTEAIRSRCLNIRINSPTEEQIVKVL 198
            S   V   IRSRC ++ + +P+ E + +VL
Sbjct: 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVL 185

Length = 394

>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 13/79 (16%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLVTEQDCP---HLLFYGPPGSGKKTLIMALLRQV------ 58
           RP+   + IV Q+ A  +K L+ +   P   H++ YGPPG GK T     L +       
Sbjct: 149 RPRAFSE-IVGQERA--IKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHT 205

Query: 59  -FGPGAEKVKVENKTWKID 76
            F   A  V+V+  T + D
Sbjct: 206 PFAEDAPFVEVDGTTLRWD 224

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]. Length = 615

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 6  KYRPKTLDQVIVHQD-IAQNLKK-LVTEQDCPHLLFYGPPGSGK 47
          KYRP+  D++ V Q+ IA  LK  L++ +  P  LF GP G+GK
Sbjct: 9  KYRPQRFDEL-VGQEAIATTLKNALISNRIAPAYLFTGPRGTGK 51

Length = 620

>gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 126 KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185
           KG+  ++V +++EV  LS  A ++  +T+E+       I       K+   I SRC    
Sbjct: 125 KGR--YRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFN 182

Query: 186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
                 E+I + L+ I + EG+ + +     +  K+  S+R A
Sbjct: 183 FKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDA 225

Length = 397

>gnl|CDD|180855 PRK07132, PRK07132, DNA polymerase III subunit delta'; Validated

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 17/67 (25%), Positives = 35/67 (52%)

Query: 132 KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTE 191
           K+L++  ++K S    ++L +T+E+       +L   + +KV   I SRC    +  P +
Sbjct: 92  KILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQ 151

Query: 192 EQIVKVL 198
           ++I+  L
Sbjct: 152 QKILAKL 158

Length = 299

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 116 EMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
           E A   P+D +    FKV +++EV  L+  A +++ +T+E+     + IL      K+  
Sbjct: 109 ERAVYAPVDAR----FKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164

Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            + SRCL   +       IV  LE I  +E +         LA  +  S+R A+
Sbjct: 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDAL 218

Length = 830

>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 29/115 (25%)

Query: 36  HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95
            +L  GPPG+GK  L   L             + N+       +R+              
Sbjct: 1   GVLLVGPPGTGKSELAERLAA----------ALSNRPVFYVQLTRD-------------- 36

Query: 96  ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSL 150
             +  D   + R  +         + P+    + G ++ VL+E+++ + +  +SL
Sbjct: 37  -TTEED--LKGRRNIDPGGASW-VDGPLVRAAREG-EIAVLDEINRANPDVLNSL 86

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	100.0
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	100.0
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	100.0
PLN03025	319	replication factor C subunit; Provisional	100.0
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	100.0
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	100.0
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	100.0
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	100.0
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK12402	337	replication factor C small subunit 2; Reviewed	100.0
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	100.0
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK00440	319	rfc replication factor C small subunit; Reviewed	100.0
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK04195	482	replication factor C large subunit; Provisional	100.0
COG2256	436	MGS1 ATPase related to the helicase subunit of the	100.0
PHA02544	316	44 clamp loader, small subunit; Provisional	99.97
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.97
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.97
KOG0990	360	consensus Replication factor C, subunit RFC5 [Repl	99.97
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.97
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.97
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.96
PRK13342	413	recombination factor protein RarA; Reviewed	99.96
PRK07993	334	DNA polymerase III subunit delta'; Validated	99.96
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.96
PRK13341	725	recombination factor protein RarA/unknown domain f	99.96
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.96
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.96
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.96
KOG1969	877	consensus DNA replication checkpoint protein CHL12	99.96
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.95
PRK06090	319	DNA polymerase III subunit delta'; Validated	99.95
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.94
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.94
KOG2028	554	consensus ATPase related to the helicase subunit o	99.94
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.94
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.94
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.93
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.93
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.93
PRK04132	846	replication factor C small subunit; Provisional	99.93
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.92
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	99.92
PRK07276	290	DNA polymerase III subunit delta'; Validated	99.92
PRK05917	290	DNA polymerase III subunit delta'; Validated	99.91
PRK08084	235	DNA replication initiation factor; Provisional	99.91
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.91
PRK05818	261	DNA polymerase III subunit delta'; Validated	99.9
PRK06893	229	DNA replication initiation factor; Validated	99.89
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	99.89
PRK08699	325	DNA polymerase III subunit delta'; Validated	99.89
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	99.88
PRK08727	233	hypothetical protein; Validated	99.88
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.87
CHL00181	287	cbbX CbbX; Provisional	99.87
PRK07132	299	DNA polymerase III subunit delta'; Validated	99.87
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.87
PRK06620	214	hypothetical protein; Validated	99.86
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.85
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.85
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.84
PRK05642	234	DNA replication initiation factor; Validated	99.84
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.83
PRK09087	226	hypothetical protein; Validated	99.83
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.82
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.82
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.81
PRK12422	445	chromosomal replication initiation protein; Provis	99.81
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.81
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.8
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.79
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.79
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.79
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.79
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.79
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.79
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	99.78
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.78
PRK06581	263	DNA polymerase III subunit delta'; Validated	99.78
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.78
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.78
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.78
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.77
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.77
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.77
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.77
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.76
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.76
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.76
CHL00095	821	clpC Clp protease ATP binding subunit	99.76
CHL00176	638	ftsH cell division protein; Validated	99.75
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.75
CHL00195	489	ycf46 Ycf46; Provisional	99.74
PRK10865	857	protein disaggregation chaperone; Provisional	99.74
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.73
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.73
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.73
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.73
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.73
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.72
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.71
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.71
KOG1968	871	consensus Replication factor C, subunit RFC1 (larg	99.71
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	99.71
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.71
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.7
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.68
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.68
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.68
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.67
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.67
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.66
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	99.65
KOG2680	454	consensus DNA helicase TIP49, TBP-interacting prot	99.65
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	99.64
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.63
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.63
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.63
PRK10865	857	protein disaggregation chaperone; Provisional	99.63
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.62
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.62
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.61
CHL00095	821	clpC Clp protease ATP binding subunit	99.6
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.6
PRK08485	206	DNA polymerase III subunit delta'; Validated	99.59
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.59
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.59
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.59
PF00004	132	AAA: ATPase family associated with various cellula	99.58
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.58
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.58
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.58
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.58
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.57
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.57
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	99.57
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.56
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.56
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.56
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.56
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.55
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.55
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	99.55
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.54
CHL00206	2281	ycf2 Ycf2; Provisional	99.54
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.54
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	99.54
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.53
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.53
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	99.52
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.52
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.52
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.52
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	99.5
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	99.5
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.5
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.49
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.47
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.47
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.47
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.47
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.47
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.46
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.46
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	99.46
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.46
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.46
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.45
PRK13531	498	regulatory ATPase RavA; Provisional	99.45
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.45
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.45
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.45
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.45
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.45
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.45
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.45
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.45
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.45
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	99.45
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.44
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.44
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.44
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.44
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.44
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.44
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.43
cd03246	173	ABCC_Protease_Secretion This family represents the	99.43
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.43
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.43
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.43
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.42
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.42
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.42
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.42
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.41
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.41
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.41
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.41
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.41
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.41
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.41
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.4
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.4
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.4
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.4
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.4
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.4
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.4
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.39
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.39
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.39
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.39
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.39
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.39
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.39
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.39
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.39
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.39
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.39
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.39
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.38
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.38
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.38
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.38
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.38
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.38
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.38
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.38
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.38
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	99.37
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.37
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.37
PRK10908	222	cell division protein FtsE; Provisional	99.37
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.37
KOG1514	767	consensus Origin recognition complex, subunit 1, a	99.37
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.37
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.37
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.36
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.36
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.36
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.36
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.36
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.36
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.36
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.36
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.36
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.36
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.35
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.35
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.35
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.35
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.35
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.35
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.35
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.35
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.35
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.35
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.35
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.35
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	99.35
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.35
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.35
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.35
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.35
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.34
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.34
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.34
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.34
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.34
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.34
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.34
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.34
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.34
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.34
COG0714	329	MoxR-like ATPases [General function prediction onl	99.34
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.33
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.33
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.33
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.33
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.33
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.33
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.33
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.33
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.33
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.33
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.33
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.33
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.33
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.33
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.33
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.33
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.33
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.33
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.32
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.32
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.32
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.32
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.32
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.32
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.32
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.31
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.31
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.31
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.31
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.31
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.3
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.3
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.3
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.3
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.3
PHA02244	383	ATPase-like protein	99.3
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.3
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.3
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.3
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	99.3
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.3
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.3
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.3
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.29
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.29
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.29
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.29
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.29
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.29
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.29
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.29
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.29
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.29
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	99.29
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.29
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.28
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.28
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.28
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.28
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.28
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	99.27
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	99.27
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.27
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.27
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.27
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.27
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.27
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.27
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.27
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.27
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.26
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.26
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.26
PRK08116	268	hypothetical protein; Validated	99.26
PRK12377	248	putative replication protein; Provisional	99.26
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.26
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.26
PRK13765	637	ATP-dependent protease Lon; Provisional	99.26
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	99.26
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.26
PRK09862	506	putative ATP-dependent protease; Provisional	99.26
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.26
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.25
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.25
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.25
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.25
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.25
PRK07952	244	DNA replication protein DnaC; Validated	99.25
PLN03211	659	ABC transporter G-25; Provisional	99.25
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.25
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.25
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.25
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.25
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.24
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.24
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.24
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.24
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.24
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.24
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.24
COG2204	464	AtoC Response regulator containing CheY-like recei	99.24
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.24
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.24
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.24
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.24
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.24
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.24
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.23
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.23
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.23
COG1123	539	ATPase components of various ABC-type transport sy	99.23
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.23
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.23
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.23
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.23
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.23
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.23
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.23
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.23
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.23
smart00350	509	MCM minichromosome maintenance proteins.	99.23
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.22
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.22
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.22
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.22
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.21
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.21
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.21
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.21
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	99.21
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.21
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.21
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.21
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.2
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.2
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.2
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
PRK10938	490	putative molybdenum transport ATP-binding protein	99.2
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.2
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.2
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.2
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.2
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.2
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.19
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.19
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.19
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.19
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.18
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.18
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.18
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.18
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.18
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	99.17
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.17
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	99.17
COG4559	259	ABC-type hemin transport system, ATPase component	99.17
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.17
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.17
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.17
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.16
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.16
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.16
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.15
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.15
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.15
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.15
PRK13409	590	putative ATPase RIL; Provisional	99.15
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.15
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.15
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.14
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.14
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.14
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.14
PRK08181	269	transposase; Validated	99.14
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.13
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.13
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.13
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.13
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.13
smart00382	148	AAA ATPases associated with a variety of cellular	99.12
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.12
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	99.12
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	99.12
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.12
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.12
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.12
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	99.12
COG4181	228	Predicted ABC-type transport system involved in ly	99.12
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.12
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.12
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.11

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=100.00  E-value=1.6e-42  Score=275.77  Aligned_cols=214  Identities=37%  Similarity=0.575  Sum_probs=177.2

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      |.|+|||||++|++++||+.+++.|.+.+..+..||++|+||||||||++|+++|++++|++.-.           ++.+
T Consensus        24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~-----------~rvl   92 (346)
T KOG0989|consen   24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFP-----------CRVL   92 (346)
T ss_pred             cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccc-----------cchh
Confidence            57999999999999999999999999999988899999999999999999999999999855321           1111


Q ss_pred             ccccceeeecccceeeeCCCC-cCcchhHHHHHHHHHHHhc---CCCcCC-CCCCeeEEEEeCCCCCCHHHHHHHHHHHH
Q 025758           81 NIDLELTTLSSANHVELSPSD-AGFQDRYVVQEVIKEMAKN---RPIDTK-GKRGFKVLVLNEVDKLSREAQHSLRRTME  155 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~viiiDE~d~l~~~~~~~ll~~le  155 (248)
                                     +...++ .|..   .+++.++.++..   .+.... .-..++|+||||+|.|..+++++|.+++|
T Consensus        93 ---------------~lnaSderGis---vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE  154 (346)
T KOG0989|consen   93 ---------------ELNASDERGIS---VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME  154 (346)
T ss_pred             ---------------hhccccccccc---chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh
Confidence                           111111 1111   122333333221   111111 13356999999999999999999999999


Q ss_pred             HhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHH
Q 025758          156 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (248)
Q Consensus       156 ~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~  235 (248)
                      .++..++||||||+.+.+..++.|||..++|+++.++.+..+|+.++.+|++.++++++++|++.++||+|.|+..||.+
T Consensus       155 ~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsl  234 (346)
T KOG0989|consen  155 DFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSL  234 (346)
T ss_pred             ccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccc
Q 025758          236 RVQQLRFT  243 (248)
Q Consensus       236 ~~~~~~~~  243 (248)
                      ...+..++
T Consensus       235 s~~gk~It  242 (346)
T KOG0989|consen  235 SLLGKRIT  242 (346)
T ss_pred             hccCcccc
Confidence            98777665

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=100.00  E-value=1.3e-40  Score=261.11  Aligned_cols=242  Identities=57%  Similarity=0.941  Sum_probs=230.1

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      |+|+|||||++++.++++.+....|......+..||++++||+|+||-|.+.++.+++++++..+.++....|.  .|..
T Consensus         1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~--tpS~   78 (351)
T KOG2035|consen    1 MLWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT--TPSK   78 (351)
T ss_pred             CcchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe--cCCC
Confidence            89999999999999999999999999998888899999999999999999999999999999999999998887  6666


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      .+ .+..+++.++++++.|++.|..+...++++++..+...+.........+|++|.|+|.|..++|.+|.+++|.+..+
T Consensus        79 kk-lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~  157 (351)
T KOG2035|consen   79 KK-LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN  157 (351)
T ss_pred             ce-EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence            54 78899999999999999999999999999999999999988888889999999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  240 (248)
                      .++|+.+|..+.+.++++|||..++.+.|+++++..++.+++++|++.++++.+..|++.++||+|.++-+|+..+....
T Consensus       158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~  237 (351)
T KOG2035|consen  158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE  237 (351)
T ss_pred             ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             cccCC
Q 025758          241 RFTMP  245 (248)
Q Consensus       241 ~~~~~  245 (248)
                      ..+.+
T Consensus       238 ~~~a~  242 (351)
T KOG2035|consen  238 PFTAN  242 (351)
T ss_pred             ccccc
Confidence            66554

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3.9e-40  Score=282.73  Aligned_cols=221  Identities=23%  Similarity=0.304  Sum_probs=183.2

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      +|++||||++|+|++||+.+++.|..++..++.+| ++|+||+|+||||+|+++|+.++|........        |..|
T Consensus         7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p--------Cg~C   78 (484)
T PRK14956          7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP--------CNEC   78 (484)
T ss_pred             hhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc--------cCCC
Confidence            69999999999999999999999999999999998 99999999999999999999998865433222        3333


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+......+.+++.+....  ....+++..+.+.. .+.    .+.++|+||||+|+|+..++++|++.+|+++..
T Consensus        79 ~sC~~i~~g~~~dviEIdaas~~--gVd~IReL~e~l~~-~p~----~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~  151 (484)
T PRK14956         79 TSCLEITKGISSDVLEIDAASNR--GIENIRELRDNVKF-APM----GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAH  151 (484)
T ss_pred             cHHHHHHccCCccceeechhhcc--cHHHHHHHHHHHHh-hhh----cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCc
Confidence            33333444444455555553211  12234554444432 221    457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      +.||++|+++..+.++++|||..+.|.+++.+++.+++.+++.++|+.++++++..|++.++|++|.++++|+++..
T Consensus       152 viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~  228 (484)
T PRK14956        152 IVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIV  228 (484)
T ss_pred             eEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988654

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=7.7e-40  Score=290.59  Aligned_cols=222  Identities=21%  Similarity=0.314  Sum_probs=184.2

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+++++.|++++..++++| +||+||+|+||||+++++++.++|.......        .|+.|
T Consensus         5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~--------PCG~C   76 (830)
T PRK07003          5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQ--------PCGVC   76 (830)
T ss_pred             hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCC--------CCccc
Confidence            48999999999999999999999999999999999 7999999999999999999999987532111        14444


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+......+.+++...+.  .....++++++.... .+.    .+.++|+||||+|+|+..++|.|+|+||+++.+
T Consensus        77 ~sCr~I~~G~h~DviEIDAas~--rgVDdIReLIe~a~~-~P~----~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~  149 (830)
T PRK07003         77 RACREIDEGRFVDYVEMDAASN--RGVDEMAALLERAVY-APV----DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH  149 (830)
T ss_pred             HHHHHHhcCCCceEEEeccccc--ccHHHHHHHHHHHHh-ccc----cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence            4434443334445566655422  222345555554432 222    457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      ++|||+|++...++++|+|||..++|.+++.+++.++|.+++.+|++.++++.+..|++.++|++|+++++|++....
T Consensus       150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~  227 (830)
T PRK07003        150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAY  227 (830)
T ss_pred             eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998776643

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.3e-39  Score=282.23  Aligned_cols=224  Identities=22%  Similarity=0.344  Sum_probs=192.2

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      |.|++||||++|+|++||+.+++.|++++..++++| +||+||+|+||||+|+++|..++|........        |+.
T Consensus         1 ~~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~p--------Cg~   72 (491)
T PRK14964          1 MNLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDP--------CGT   72 (491)
T ss_pred             CChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCC--------ccc
Confidence            899999999999999999999999999999999997 99999999999999999999999976433222        445


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~  159 (248)
                      |..|........++.+++.+.+.  .....+++.++... +.|.    .+.++|+||||+++|+..+.++|++++|+++.
T Consensus        73 C~~C~~i~~~~~~Dv~eidaas~--~~vddIR~Iie~~~-~~P~----~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~  145 (491)
T PRK14964         73 CHNCISIKNSNHPDVIEIDAASN--TSVDDIKVILENSC-YLPI----SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP  145 (491)
T ss_pred             cHHHHHHhccCCCCEEEEecccC--CCHHHHHHHHHHHH-hccc----cCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence            55555555556677777776532  23334666665543 3333    45889999999999999999999999999999


Q ss_pred             CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      .+.||++|++...+.++++|||..+.|.+++.+++.+++..++.++++.+++++++.|++.++|++|.+++.|+.++...
T Consensus       146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~  225 (491)
T PRK14964        146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYS  225 (491)
T ss_pred             CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987543

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.3e-39  Score=285.82  Aligned_cols=226  Identities=21%  Similarity=0.335  Sum_probs=185.8

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|+|++||+++++.|++++..++++| +||+||+|+||||+|+.+|+.++|......  .+ .....|+.|
T Consensus         5 vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~--~g-~~~~PCG~C   81 (700)
T PRK12323          5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE--GG-ITAQPCGQC   81 (700)
T ss_pred             hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--cc-CCCCCCccc
Confidence            48999999999999999999999999999999999 899999999999999999999999542100  00 000114444


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+....+.+.+++...+.  .....++++++.+... +.    .+.++|+||||+|+|+..+.|+|+|+||+++.+
T Consensus        82 ~sC~~I~aG~hpDviEIdAas~--~gVDdIReLie~~~~~-P~----~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~  154 (700)
T PRK12323         82 RACTEIDAGRFVDYIEMDAASN--RGVDEMAQLLDKAVYA-PT----AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH  154 (700)
T ss_pred             HHHHHHHcCCCCcceEeccccc--CCHHHHHHHHHHHHhc-hh----cCCceEEEEEChHhcCHHHHHHHHHhhccCCCC
Confidence            4444444455556666665432  2233456655544432 22    457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      +.|||+|+++..++++++|||+.+.|.+++.+++.++|.+++.++++.++++.+..|++.++|++|.++++++++..
T Consensus       155 v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia  231 (700)
T PRK12323        155 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIA  231 (700)
T ss_pred             ceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987554

>PLN03025 replication factor C subunit; Provisional

Probab=100.00  E-value=7.5e-39  Score=268.77  Aligned_cols=206  Identities=32%  Similarity=0.561  Sum_probs=173.6

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      ++|+|||||++|++++||+++++.|+.++..++.+|++|+||||+||||+|+++|++++++....               
T Consensus         1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~---------------   65 (319)
T PLN03025          1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKE---------------   65 (319)
T ss_pred             CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCcc---------------
Confidence            58999999999999999999999999999999999999999999999999999999987654210               


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                                  ..+++.+.+..  ....+++.++.+...... + ..+.++|++|||+|.|...++++|++.+|.++..
T Consensus        66 ------------~~~eln~sd~~--~~~~vr~~i~~~~~~~~~-~-~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~  129 (319)
T PLN03025         66 ------------AVLELNASDDR--GIDVVRNKIKMFAQKKVT-L-PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNT  129 (319)
T ss_pred             ------------ceeeecccccc--cHHHHHHHHHHHHhcccc-C-CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCC
Confidence                        01333332221  122355555555443211 1 1246899999999999999999999999998888


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      +.||+++|....+.++++|||..+.|++++.+++..++..++.++|+.++++++++++..++||+|.+++.||.+..
T Consensus       130 t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~  206 (319)
T PLN03025        130 TRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHS  206 (319)
T ss_pred             ceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999996654

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=5.4e-39  Score=282.15  Aligned_cols=222  Identities=22%  Similarity=0.313  Sum_probs=188.2

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|+|++||+.+++.|+.++..++++| +||+||+|+||||+|+++|+.++|.......        .|+.|
T Consensus         5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~--------pCg~C   76 (509)
T PRK14958          5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSAN--------PCNDC   76 (509)
T ss_pred             hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcc--------cCCCC
Confidence            59999999999999999999999999999999999 8999999999999999999999997532211        14555


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|........++.+++.+.+.  .....+++.++.+.. .+.    .+.++|+||||+|+|+..+.++|++++|+++..
T Consensus        77 ~~C~~i~~g~~~d~~eidaas~--~~v~~iR~l~~~~~~-~p~----~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~  149 (509)
T PRK14958         77 ENCREIDEGRFPDLFEVDAASR--TKVEDTRELLDNIPY-APT----KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH  149 (509)
T ss_pred             HHHHHHhcCCCceEEEEccccc--CCHHHHHHHHHHHhh-ccc----cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence            5445555556666777766432  222335665554443 222    457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.||++|+++..++++++|||..+.|.+++.+++.+++..++.++|+.++++.+..+++.++|++|.+++.|+.+..-
T Consensus       150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~  227 (509)
T PRK14958        150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAY  227 (509)
T ss_pred             eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999877654

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=4.5e-38  Score=276.79  Aligned_cols=222  Identities=20%  Similarity=0.302  Sum_probs=184.6

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+.+.+.|.+++..++++| +||+||+|+||||+|+++|+.++|.......        .|..|
T Consensus         4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~--------pCg~C   75 (702)
T PRK14960          4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTST--------PCEVC   75 (702)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCC--------CCccC
Confidence            58999999999999999999999999999999998 8999999999999999999999986532111        14444


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|........++.+.+.+.+..  ....+++.+..... .+.    .+.++|+||||+++|+..+.++|++++|+++..
T Consensus        76 ~sC~~I~~g~hpDviEIDAAs~~--~VddIReli~~~~y-~P~----~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~  148 (702)
T PRK14960         76 ATCKAVNEGRFIDLIEIDAASRT--KVEDTRELLDNVPY-APT----QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH  148 (702)
T ss_pred             HHHHHHhcCCCCceEEecccccC--CHHHHHHHHHHHhh-hhh----cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence            44344444455566666654321  23345555554432 222    347899999999999999999999999999988


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.||++|+++..++.+++|||..+.|.+++.+++.+++.+++.++++.++++++..|++.++||+|.++++|+.+...
T Consensus       149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIay  226 (702)
T PRK14960        149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAY  226 (702)
T ss_pred             cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999876643

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=100.00  E-value=3.8e-38  Score=242.02  Aligned_cols=213  Identities=31%  Similarity=0.514  Sum_probs=183.6

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      ++|+|||||.-+.|++|++...+.|+-...+|..||++|.||||+||||.+.++|+.+.++....-              
T Consensus        15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~--------------   80 (333)
T KOG0991|consen   15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEA--------------   80 (333)
T ss_pred             chHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhH--------------
Confidence            369999999999999999999999999999999999999999999999999999999977553210              


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                                   -++++.++..  +-..++..++.++...-..  ..+..+|+|+||+|.|...+|.++.+++|-++..
T Consensus        81 -------------vLELNASdeR--GIDvVRn~IK~FAQ~kv~l--p~grhKIiILDEADSMT~gAQQAlRRtMEiyS~t  143 (333)
T KOG0991|consen   81 -------------VLELNASDER--GIDVVRNKIKMFAQKKVTL--PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNT  143 (333)
T ss_pred             -------------hhhccCcccc--ccHHHHHHHHHHHHhhccC--CCCceeEEEeeccchhhhHHHHHHHHHHHHHccc
Confidence                         1445544432  1224677777777654221  2468899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  240 (248)
                      ++|.+++|....+.+++.|||.+++|..+++.++...|..+++.|++++.++.++.++-.++||+|+++|.||.-...-.
T Consensus       144 tRFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g  223 (333)
T KOG0991|consen  144 TRFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFG  223 (333)
T ss_pred             chhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998775444


Q ss_pred             cccC
Q 025758          241 RFTM  244 (248)
Q Consensus       241 ~~~~  244 (248)
                      .++.
T Consensus       224 ~Vn~  227 (333)
T KOG0991|consen  224 LVNQ  227 (333)
T ss_pred             ccch
Confidence            4443

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=5.2e-38  Score=279.03  Aligned_cols=228  Identities=21%  Similarity=0.336  Sum_probs=187.3

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+.+++.|++++..++++| +||+||+|+||||+|+++|+.++|.......  + .....|+.|
T Consensus         5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~--~-~~~~pCg~C   81 (618)
T PRK14951          5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQG--G-ITATPCGVC   81 (618)
T ss_pred             HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccccc--C-CCCCCCCcc
Confidence            59999999999999999999999999999999999 7999999999999999999999996532110  0 001125555


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+....+++.+.+.....  .....+++.++... +.+.    .+.++|+||||+|+|+..+.|+|+|++|+++..
T Consensus        82 ~~C~~i~~g~h~D~~eldaas~--~~Vd~iReli~~~~-~~p~----~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~  154 (618)
T PRK14951         82 QACRDIDSGRFVDYTELDAASN--RGVDEVQQLLEQAV-YKPV----QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEY  154 (618)
T ss_pred             HHHHHHHcCCCCceeecCcccc--cCHHHHHHHHHHHH-hCcc----cCCceEEEEEChhhCCHHHHHHHHHhcccCCCC
Confidence            5545555445556566554321  22334666665443 3332    457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      +.|||+|+++..++.+++|||..+.|.+++.+++.+++.+++.++|+.++++.+.+|++.++||+|.++++++.+...+
T Consensus       155 ~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~  233 (618)
T PRK14951        155 LKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFG  233 (618)
T ss_pred             eEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998766433

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=9.1e-38  Score=277.98  Aligned_cols=222  Identities=23%  Similarity=0.333  Sum_probs=186.6

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+.+++.|.+.+..++++| +||+||+|+||||+|+++|+.++|......        ..|+.|
T Consensus         5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~--------~pCg~C   76 (647)
T PRK07994          5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA--------TPCGEC   76 (647)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC--------CCCCCC
Confidence            58999999999999999999999999999999999 799999999999999999999999632111        125555


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+.....++.+.+...+.  .....++++++.+.. .+.    .+.++|+||||+|+|+..++|+|+|+||+++..
T Consensus        77 ~~C~~i~~g~~~D~ieidaas~--~~VddiR~li~~~~~-~p~----~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~  149 (647)
T PRK07994         77 DNCREIEQGRFVDLIEIDAASR--TKVEDTRELLDNVQY-APA----RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH  149 (647)
T ss_pred             HHHHHHHcCCCCCceeeccccc--CCHHHHHHHHHHHHh-hhh----cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence            5555555555566666655431  223345665555443 222    457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      ++||++|+++..++++++|||..++|.+++.+++..+|.+++.++++.++++.+..|+..++|++|.++++++.+...
T Consensus       150 v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~  227 (647)
T PRK07994        150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIAS  227 (647)
T ss_pred             eEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999876543

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=100.00  E-value=7.9e-39  Score=276.56  Aligned_cols=223  Identities=25%  Similarity=0.383  Sum_probs=187.8

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      ++.||||++|+|++||+.+.+.|+..+..+++.| ++|+||.|+||||+||.+|+.++|........        |..|.
T Consensus         6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP--------C~~C~   77 (515)
T COG2812           6 LARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP--------CGKCI   77 (515)
T ss_pred             HHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc--------chhhh
Confidence            6789999999999999999999999999999999 99999999999999999999999987533333        33333


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~  161 (248)
                      .|.+....+..+-+++...+..  .-..++++.+... +.|.    .+.++|+||||+++|...+.|+|||++|+|+.++
T Consensus        78 ~Ck~I~~g~~~DviEiDaASn~--gVddiR~i~e~v~-y~P~----~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV  150 (515)
T COG2812          78 SCKEINEGSLIDVIEIDAASNT--GVDDIREIIEKVN-YAPS----EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHV  150 (515)
T ss_pred             hhHhhhcCCcccchhhhhhhcc--ChHHHHHHHHHhc-cCCc----cccceEEEEecHHhhhHHHHHHHhcccccCccCe
Confidence            3333333333444555544332  2223455444333 3443    6799999999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  240 (248)
                      +|||+|+++..++.+++|||+.++|...+.+++...|..++.+|++.++++++..+++.++|++|+++++|+++...+.
T Consensus       151 ~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~  229 (515)
T COG2812         151 KFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE  229 (515)
T ss_pred             EEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987654

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2e-37  Score=274.47  Aligned_cols=223  Identities=18%  Similarity=0.269  Sum_probs=183.1

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      |.|.+||||++|+|++||+.+++.|+.++..++++| +||+||+|+||||+|+++|+.++|........        |+.
T Consensus         1 ~al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~p--------Cg~   72 (584)
T PRK14952          1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATP--------CGV   72 (584)
T ss_pred             CcHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCc--------ccc
Confidence            678999999999999999999999999999999999 89999999999999999999999865322111        444


Q ss_pred             cccccceeee--cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758           80 RNIDLELTTL--SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (248)
Q Consensus        80 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~  157 (248)
                      |..|..+...  ...+.+.+...+.  .....++++.+... +.+.    .+.++|+||||+++|...++|+|+++||++
T Consensus        73 C~~C~~i~~~~~~~~dvieidaas~--~gvd~iRel~~~~~-~~P~----~~~~KVvIIDEah~Lt~~A~NALLK~LEEp  145 (584)
T PRK14952         73 CESCVALAPNGPGSIDVVELDAASH--GGVDDTRELRDRAF-YAPA----QSRYRIFIVDEAHMVTTAGFNALLKIVEEP  145 (584)
T ss_pred             cHHHHHhhcccCCCceEEEeccccc--cCHHHHHHHHHHHH-hhhh----cCCceEEEEECCCcCCHHHHHHHHHHHhcC
Confidence            4433333221  2334455544322  12223444443332 2332    457899999999999999999999999999


Q ss_pred             cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       158 ~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      +..+.||++|+++..++++++|||..+.|.+++.+++.+++..++.++|+.++++++..+++.++|++|.+++.|+.+..
T Consensus       146 p~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~  225 (584)
T PRK14952        146 PEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA  225 (584)
T ss_pred             CCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             h
Q 025758          238 Q  238 (248)
Q Consensus       238 ~  238 (248)
                      .
T Consensus       226 ~  226 (584)
T PRK14952        226 G  226 (584)
T ss_pred             c
Confidence            4

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2.1e-37  Score=279.66  Aligned_cols=221  Identities=24%  Similarity=0.367  Sum_probs=181.1

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+.+++.|++++..++++| +||+||+|+||||+|+++|+.++|........        |..|
T Consensus         5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~p--------Cg~C   76 (944)
T PRK14949          5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATP--------CGVC   76 (944)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCC--------CCCc
Confidence            68999999999999999999999999999999999 79999999999999999999998864211111        3333


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|.........+.+++.....  .....++++++.+.. .+.    .+.++|+||||+++|+..++++|+|+||+++..
T Consensus        77 ~sC~~i~~g~~~DviEidAas~--~kVDdIReLie~v~~-~P~----~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~  149 (944)
T PRK14949         77 SSCVEIAQGRFVDLIEVDAASR--TKVDDTRELLDNVQY-RPS----RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH  149 (944)
T ss_pred             hHHHHHhcCCCceEEEeccccc--cCHHHHHHHHHHHHh-hhh----cCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence            3333333333344455544321  222335555555432 222    457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      ++||++|+++..++++|+|||..++|.+++.+++..+|.+++..+++.++++.+..|+..++|++|.++++++.+..
T Consensus       150 vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala  226 (944)
T PRK14949        150 VKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIA  226 (944)
T ss_pred             eEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999986553

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=1.6e-36  Score=265.20  Aligned_cols=223  Identities=22%  Similarity=0.329  Sum_probs=182.7

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      +.|++||||++|++++||+.+.+.|..++..++.+| +||+||+|+||||+|+++++.+.|+.......        |..
T Consensus         2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~p--------C~~   73 (535)
T PRK08451          2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTP--------CDT   73 (535)
T ss_pred             ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCC--------Ccc
Confidence            469999999999999999999999999999999999 79999999999999999999998876433222        333


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~  159 (248)
                      |..|.......+++.+.+.....  .....+++.+.... ..|.    .+.++|+||||+++|+..++++|++++|+++.
T Consensus        74 C~~C~~~~~~~h~dv~eldaas~--~gId~IRelie~~~-~~P~----~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~  146 (535)
T PRK08451         74 CIQCQSALENRHIDIIEMDAASN--RGIDDIRELIEQTK-YKPS----MARFKIFIIDEVHMLTKEAFNALLKTLEEPPS  146 (535)
T ss_pred             cHHHHHHhhcCCCeEEEeccccc--cCHHHHHHHHHHHh-hCcc----cCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence            33333333333344444443221  12234555554432 2222    45789999999999999999999999999999


Q ss_pred             CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      .+.||++++++..++++++|||..++|.+++.+++..++..++.++|+.++++++..|+..++||+|.+++.|+.++.-
T Consensus       147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~  225 (535)
T PRK08451        147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIY  225 (535)
T ss_pred             ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999887754

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=3.8e-37  Score=273.10  Aligned_cols=222  Identities=21%  Similarity=0.330  Sum_probs=182.6

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|+|++||+.+++.|+.++..++++| +||+||+|+||||+|+++|+.++|+.......        |+.|
T Consensus         5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~p--------Cg~C   76 (709)
T PRK08691          5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEP--------CGVC   76 (709)
T ss_pred             hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCC--------Cccc
Confidence            58999999999999999999999999999999998 89999999999999999999999876422111        3333


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|.........+.+++.....  .....+++++..... .+.    .+.++|+||||+++|+..+.+.|++.||+++..
T Consensus        77 ~sCr~i~~g~~~DvlEidaAs~--~gVd~IRelle~a~~-~P~----~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~  149 (709)
T PRK08691         77 QSCTQIDAGRYVDLLEIDAASN--TGIDNIREVLENAQY-APT----AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH  149 (709)
T ss_pred             HHHHHHhccCccceEEEecccc--CCHHHHHHHHHHHHh-hhh----hCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence            3333333333344455543321  122345565554332 222    347899999999999999999999999999989


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.|||+|+++..++.+++|||..+.|.+++.+++..+|.+++.++++.++++.+..|++.++||+|.++++|+.+...
T Consensus       150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~  227 (709)
T PRK08691        150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIAL  227 (709)
T ss_pred             cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887754

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=7.5e-37  Score=268.78  Aligned_cols=223  Identities=22%  Similarity=0.339  Sum_probs=186.5

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+.+++.|..++..++.+| ++|+||+|+||||+|+++|..++|........        |+.|
T Consensus         5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~--------Cg~C   76 (605)
T PRK05896          5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC--------CNSC   76 (605)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------Cccc
Confidence            69999999999999999999999999999999998 99999999999999999999999876433222        4444


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|.......+++.+.+.+.+  ......+++.++.+.. .|.    ..+++|+||||+++|+..++++|++++|+++..
T Consensus        77 ~sCr~i~~~~h~DiieIdaas--~igVd~IReIi~~~~~-~P~----~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~  149 (605)
T PRK05896         77 SVCESINTNQSVDIVELDAAS--NNGVDEIRNIIDNINY-LPT----TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKH  149 (605)
T ss_pred             HHHHHHHcCCCCceEEecccc--ccCHHHHHHHHHHHHh-chh----hCCcEEEEEechHhCCHHHHHHHHHHHHhCCCc
Confidence            444444444556666665432  1223345555554443 232    346889999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      +.+|++|+++..++++++|||..+.|.+++.+++..++..++.++++.++++++..+++.++|++|.+++.|+.++.-.
T Consensus       150 tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~  228 (605)
T PRK05896        150 VVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFK  228 (605)
T ss_pred             EEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876543

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1e-36  Score=259.68  Aligned_cols=222  Identities=23%  Similarity=0.326  Sum_probs=179.7

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      +|++||||++|++++||+.+++.|++.+..++.+| ++|+||+|+||||+|+++|..+.|........        |+.|
T Consensus         5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~p--------c~~c   76 (363)
T PRK14961          5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNP--------CRKC   76 (363)
T ss_pred             HHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCCC
Confidence            58999999999999999999999999999999999 79999999999999999999998864321111        3333


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|........++...+.+...  .....+++.++.+.. .|.    .+.++|+||||+++|+..++++|++.+|+++..
T Consensus        77 ~~c~~~~~~~~~d~~~~~~~~~--~~v~~ir~i~~~~~~-~p~----~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~  149 (363)
T PRK14961         77 IICKEIEKGLCLDLIEIDAASR--TKVEEMREILDNIYY-SPS----KSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH  149 (363)
T ss_pred             HHHHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhc-Ccc----cCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence            3333333333444455543321  122234444444332 222    457889999999999999999999999999988


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.||++|++...+.++++|||..+.|.+++.+++.+++..++.++++.++++++..++..++||+|.+++.++.++..
T Consensus       150 ~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~  227 (363)
T PRK14961        150 IKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINL  227 (363)
T ss_pred             eEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887643

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=7.1e-37  Score=280.05  Aligned_cols=222  Identities=19%  Similarity=0.291  Sum_probs=181.8

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      |.|.+||||++|++|+||+.+++.|++++..++++| +||+||+|+||||+|++||+.|+|........        |+.
T Consensus         3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~p--------Cg~   74 (824)
T PRK07764          3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTP--------CGE   74 (824)
T ss_pred             hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCC--------Ccc
Confidence            568999999999999999999999999999999999 89999999999999999999999965322111        444


Q ss_pred             cccccceeee--cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758           80 RNIDLELTTL--SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (248)
Q Consensus        80 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~  157 (248)
                      |..|..+...  ...+.+.+...+.  .....++++.+.+ .+.+.    ...++|+||||+|+|+..++|.|+|+||++
T Consensus        75 C~sC~~~~~g~~~~~dv~eidaas~--~~Vd~iR~l~~~~-~~~p~----~~~~KV~IIDEad~lt~~a~NaLLK~LEEp  147 (824)
T PRK07764         75 CDSCVALAPGGPGSLDVTEIDAASH--GGVDDARELRERA-FFAPA----ESRYKIFIIDEAHMVTPQGFNALLKIVEEP  147 (824)
T ss_pred             cHHHHHHHcCCCCCCcEEEeccccc--CCHHHHHHHHHHH-Hhchh----cCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence            4433333322  2233444433221  1222344433332 22222    458899999999999999999999999999


Q ss_pred             cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       158 ~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      +..+.|||+|++.+.++++|+|||.++.|.+++.+++.++|.+++.++++.++++.+.+|+..++||+|.+++.|+.++.
T Consensus       148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia  227 (824)
T PRK07764        148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLA  227 (824)
T ss_pred             CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999874

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.2e-36  Score=267.35  Aligned_cols=222  Identities=22%  Similarity=0.308  Sum_probs=182.0

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+.+++.|..++..++++| ++|+||+|+||||+|+.+|..++|........        |+.|
T Consensus         5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~p--------Cg~C   76 (546)
T PRK14957          5 ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEP--------CNKC   76 (546)
T ss_pred             hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC--------Cccc
Confidence            69999999999999999999999999999999999 89999999999999999999998865322111        3333


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|.........+.+++.....  .....+++.++.+... +.    .+.++|+||||+++|+..++++|++++|+++..
T Consensus        77 ~sC~~i~~~~~~dlieidaas~--~gvd~ir~ii~~~~~~-p~----~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~  149 (546)
T PRK14957         77 ENCVAINNNSFIDLIEIDAASR--TGVEETKEILDNIQYM-PS----QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY  149 (546)
T ss_pred             HHHHHHhcCCCCceEEeecccc--cCHHHHHHHHHHHHhh-hh----cCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence            3333333334445555543221  1222345555544432 21    457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.||++|++...++++++|||..+.|.+++.+++..++..++.++++.++++.+..|+..++||+|.++++|+.++.-
T Consensus       150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~  227 (546)
T PRK14957        150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISF  227 (546)
T ss_pred             ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987743

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=1.7e-36  Score=264.84  Aligned_cols=227  Identities=21%  Similarity=0.290  Sum_probs=185.4

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      ++|++||||++|+|++||+.+++.|+..+..++++| ++|+||+|+||||+|+++|+.++|.....-   + +-...|..
T Consensus         9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~---~-~~~~~C~~   84 (507)
T PRK06645          9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITE---N-TTIKTCEQ   84 (507)
T ss_pred             cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccc---C-cCcCCCCC
Confidence            479999999999999999999999999999999887 999999999999999999999998652110   0 00011333


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~  159 (248)
                      |..|.......+++.+++.+.+.  .....+++.++.... .|.    .+.++|+||||+++|+..+.++|++++|+++.
T Consensus        85 C~~C~~i~~~~h~Dv~eidaas~--~~vd~Ir~iie~a~~-~P~----~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~  157 (507)
T PRK06645         85 CTNCISFNNHNHPDIIEIDAASK--TSVDDIRRIIESAEY-KPL----QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP  157 (507)
T ss_pred             ChHHHHHhcCCCCcEEEeeccCC--CCHHHHHHHHHHHHh-ccc----cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCC
Confidence            43333444444556666655322  223345665554432 332    45789999999999999999999999999999


Q ss_pred             CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      .+.||++|++...+.++++|||..+.|.+++.+++.+++..++.++++.++++++..|+..++||+|.+++.|+.++..
T Consensus       158 ~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~  236 (507)
T PRK06645        158 HIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASM  236 (507)
T ss_pred             CEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998654

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.3e-36  Score=271.46  Aligned_cols=222  Identities=21%  Similarity=0.353  Sum_probs=185.7

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+++++.|..++..++.+| +||+||+|+||||+|+++|+.++|.......        .|+.|
T Consensus         5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~--------~c~~c   76 (576)
T PRK14965          5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAE--------PCNVC   76 (576)
T ss_pred             HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC--------CCCcc
Confidence            38899999999999999999999999999999999 8999999999999999999999987532211        14455


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+......+.+.+...+.  .....++++.+.+.. .|.    .+.++|+||||+|+|+..++|+|+++||+++.+
T Consensus        77 ~~c~~i~~g~~~d~~eid~~s~--~~v~~ir~l~~~~~~-~p~----~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~  149 (576)
T PRK14965         77 PPCVEITEGRSVDVFEIDGASN--TGVDDIRELRENVKY-LPS----RSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPH  149 (576)
T ss_pred             HHHHHHhcCCCCCeeeeeccCc--cCHHHHHHHHHHHHh-ccc----cCCceEEEEEChhhCCHHHHHHHHHHHHcCCCC
Confidence            5555555555555565544321  222335555544432 332    458899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.||++|+++..++++++|||..+.|.+++.+++..++..++.++|+.++++.+..++..++||+|.+++.|+.+..-
T Consensus       150 ~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay  227 (576)
T PRK14965        150 VKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAF  227 (576)
T ss_pred             eEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887643

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.7e-36  Score=267.86  Aligned_cols=222  Identities=22%  Similarity=0.363  Sum_probs=183.5

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+.+++.|..++..++++| ++|+||+|+||||+|+++|+.++|.......        .|+.|
T Consensus         5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~--------pcg~C   76 (527)
T PRK14969          5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTAT--------PCGVC   76 (527)
T ss_pred             HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCCC
Confidence            48999999999999999999999999999999999 8999999999999999999999986532111        14444


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|........++.+++....  ......+++.+.... +.|.    .+.++|+||||+|+|+..+.|+|+|++|+++..
T Consensus        77 ~~C~~i~~~~~~d~~ei~~~~--~~~vd~ir~l~~~~~-~~p~----~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~  149 (527)
T PRK14969         77 SACLEIDSGRFVDLIEVDAAS--NTQVDAMRELLDNAQ-YAPT----RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH  149 (527)
T ss_pred             HHHHHHhcCCCCceeEeeccc--cCCHHHHHHHHHHHh-hCcc----cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence            333333333444555554432  122334555555443 3332    457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.||++|+++..++++++|||..+.|.+++.+++.+++.+++.++|+.++++.+..|++.++|++|.++++++.+...
T Consensus       150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~  227 (527)
T PRK14969        150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAY  227 (527)
T ss_pred             EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999877654

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=3.7e-36  Score=267.65  Aligned_cols=227  Identities=21%  Similarity=0.312  Sum_probs=188.2

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+.+++.|..++..++++| +||+||+|+||||+|+++|+.++|......  .+ +....|+.|
T Consensus        13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~--~~-~~~~~cg~c   89 (598)
T PRK09111         13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD--GG-PTIDLCGVG   89 (598)
T ss_pred             hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc--CC-CccccCccc
Confidence            58999999999999999999999999999999998 999999999999999999999998753111  00 001124444


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+....+++.+.+.+.+.  .....++++++.+. +.+.    ...++|+||||+++|+..+.++|++++|+++..
T Consensus        90 ~~C~~i~~g~h~Dv~e~~a~s~--~gvd~IReIie~~~-~~P~----~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~  162 (598)
T PRK09111         90 EHCQAIMEGRHVDVLEMDAASH--TGVDDIREIIESVR-YRPV----SARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH  162 (598)
T ss_pred             HHHHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHH-hchh----cCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCC
Confidence            4444455555666667665432  23344666665443 3332    457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.|||++++...++++++|||..+.|.+++.+++..++.+++.++++.++++.++.|+..++|++|.+++.|+.+...
T Consensus       163 ~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~  240 (598)
T PRK09111        163 VKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAH  240 (598)
T ss_pred             eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887654

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=4e-36  Score=265.43  Aligned_cols=221  Identities=19%  Similarity=0.293  Sum_probs=179.8

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      +|++||||++|+|++||+.+++.|++++..++++| +||+||+|+||||+|+++|+.++|........        |..|
T Consensus         5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~p--------Cg~C   76 (624)
T PRK14959          5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEP--------CNTC   76 (624)
T ss_pred             hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCC--------Cccc
Confidence            69999999999999999999999999999999777 99999999999999999999999864321111        3344


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+....+++.+.+.....  .....++++.+.+. +.+.    .+.++|+||||+|+|+..+++.|++.+|+++..
T Consensus        77 ~sC~~i~~g~hpDv~eId~a~~--~~Id~iR~L~~~~~-~~p~----~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~  149 (624)
T PRK14959         77 EQCRKVTQGMHVDVVEIDGASN--RGIDDAKRLKEAIG-YAPM----EGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR  149 (624)
T ss_pred             HHHHHHhcCCCCceEEEecccc--cCHHHHHHHHHHHH-hhhh----cCCceEEEEEChHhCCHHHHHHHHHHhhccCCC
Confidence            3333344444455555543221  12223444333332 2222    457889999999999999999999999999888


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      +.||++|+++..+.++++|||..+.|.+++.+++..+|..++.++++.+++++++.|++.++||+|.++++|+.+..
T Consensus       150 ~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~  226 (624)
T PRK14959        150 VTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLA  226 (624)
T ss_pred             EEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987653

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=1.6e-35  Score=265.11  Aligned_cols=218  Identities=26%  Similarity=0.385  Sum_probs=178.7

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccc-eecccceeeccC
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKV-KVENKTWKIDAG   78 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~-~~~~~~~~~~~~   78 (248)
                      +.|++||||++|++++||+.+++.|+.++..++++| +||+||+|+||||+|+++|+.++|...+.. ..        |+
T Consensus         6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p--------C~   77 (725)
T PRK07133          6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP--------CQ   77 (725)
T ss_pred             hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc--------hh
Confidence            479999999999999999999999999999999999 899999999999999999999998753210 11        22


Q ss_pred             CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~  158 (248)
                      .|.   .| ....++.+.+.+.  +......++++++.+.. .|.    .+.++|+||||+++|...+.++|+++||+|+
T Consensus        78 ~C~---~~-~~~~~Dvieidaa--sn~~vd~IReLie~~~~-~P~----~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP  146 (725)
T PRK07133         78 ECI---EN-VNNSLDIIEMDAA--SNNGVDEIRELIENVKN-LPT----QSKYKIYIIDEVHMLSKSAFNALLKTLEEPP  146 (725)
T ss_pred             HHH---Hh-hcCCCcEEEEecc--ccCCHHHHHHHHHHHHh-chh----cCCCEEEEEEChhhCCHHHHHHHHHHhhcCC
Confidence            221   12 1122333333321  11223335665555443 232    4688999999999999999999999999999


Q ss_pred             CCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       159 ~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      ..+.||++|+++..++++++|||..+.|.+++.+++..+|..++.++|+.++++++..++..++|++|.+++.++.+..
T Consensus       147 ~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~  225 (725)
T PRK07133        147 KHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSI  225 (725)
T ss_pred             CceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998764

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=3.4e-35  Score=261.37  Aligned_cols=221  Identities=23%  Similarity=0.369  Sum_probs=185.8

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+.+.+.|++++..++.+| +||+||+|+|||++|+.+|+.++|+......        .|..|
T Consensus         5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~--------pC~~C   76 (559)
T PRK05563          5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE--------PCNEC   76 (559)
T ss_pred             HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCcc
Confidence            38899999999999999999999999999999999 8999999999999999999999997643211        14445


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|........++.+.+.+...  .....++++.+.+. +.|.    .+.++|+||||+++|...+.++|++++|+++..
T Consensus        77 ~~C~~i~~g~~~dv~eidaas~--~~vd~ir~i~~~v~-~~p~----~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~  149 (559)
T PRK05563         77 EICKAITNGSLMDVIEIDAASN--NGVDEIRDIRDKVK-YAPS----EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAH  149 (559)
T ss_pred             HHHHHHhcCCCCCeEEeecccc--CCHHHHHHHHHHHh-hCcc----cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCC
Confidence            4444555555666666655321  12223455444433 3333    568999999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      +.||++|+++..++++++|||..+.|.+++.+++..++..++.++|+.++++++..++..++|++|.+++.|+.+..
T Consensus       150 ~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~  226 (559)
T PRK05563        150 VIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAIS  226 (559)
T ss_pred             eEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987764

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=6.2e-35  Score=256.02  Aligned_cols=226  Identities=23%  Similarity=0.296  Sum_probs=184.9

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      +++||||++|+|++||+.+++.|+.++..++.+| ++|+||+|+||||+|+++|..+.|..... ..        |+.|.
T Consensus         4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~-~~--------cg~C~   74 (504)
T PRK14963          4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP-KP--------CGECE   74 (504)
T ss_pred             HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCC-CC--------CCcCh
Confidence            4599999999999999999999999999999999 69999999999999999999998854211 11        44444


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~  161 (248)
                      .|.......+++.+.+.+...  .....++++...+.. .+.    .+.++|+||||+|.++..+.+.|++.+++++..+
T Consensus        75 sc~~i~~~~h~dv~el~~~~~--~~vd~iR~l~~~~~~-~p~----~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t  147 (504)
T PRK14963         75 SCLAVRRGAHPDVLEIDAASN--NSVEDVRDLREKVLL-APL----RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHV  147 (504)
T ss_pred             hhHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhh-ccc----cCCCeEEEEECccccCHHHHHHHHHHHHhCCCCE
Confidence            434444445566666665421  223334554333332 222    3578899999999999999999999999998888


Q ss_pred             eEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhccc
Q 025758          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR  241 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~  241 (248)
                      .||++++++..+.++++|||..+.|.+++.+++.+++..++.++|+.++++++..|++.++||+|.+++.|+.+...+..
T Consensus       148 ~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~  227 (504)
T PRK14963        148 IFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTP  227 (504)
T ss_pred             EEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998765444


Q ss_pred             ccC
Q 025758          242 FTM  244 (248)
Q Consensus       242 ~~~  244 (248)
                      ++.
T Consensus       228 It~  230 (504)
T PRK14963        228 VTR  230 (504)
T ss_pred             CCH
Confidence            443

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=5.6e-35  Score=254.41  Aligned_cols=222  Identities=23%  Similarity=0.372  Sum_probs=178.2

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+++.+.|...+..++++| ++|+||||+||||+|+++|..+.|........        |..|
T Consensus         3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~p--------c~~c   74 (472)
T PRK14962          3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEP--------CNEC   74 (472)
T ss_pred             hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCC--------Cccc
Confidence            58999999999999999999999999999999988 89999999999999999999998765322222        2222


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|........++.+.+.+...  .....+++.... ....+.    .+.++|+||||+++|+..+++.|++.+++++..
T Consensus        75 ~~c~~i~~g~~~dv~el~aa~~--~gid~iR~i~~~-~~~~p~----~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~  147 (472)
T PRK14962         75 RACRSIDEGTFMDVIELDAASN--RGIDEIRKIRDA-VGYRPM----EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH  147 (472)
T ss_pred             HHHHHHhcCCCCccEEEeCccc--CCHHHHHHHHHH-HhhChh----cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence            2222222233344455554321  111234443332 222332    347889999999999999999999999999888


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.+|++++++..+.++++|||..+.|.+++.+++..++..++..+++.+++++++.|++.++||+|.+++.|+.+...
T Consensus       148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~  225 (472)
T PRK14962        148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKF  225 (472)
T ss_pred             EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            899999998889999999999999999999999999999999999999999999999999999999999999987653

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=9.4e-35  Score=254.08  Aligned_cols=223  Identities=26%  Similarity=0.380  Sum_probs=180.3

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      +|++||||++|++++||+.+++.|..++..++.+| ++|+||+|+||||+|+++|..++|.......        .|+.|
T Consensus         5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~--------pc~~c   76 (486)
T PRK14953          5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGE--------PCGKC   76 (486)
T ss_pred             HHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCC--------CCCcc
Confidence            79999999999999999999999999999999999 8899999999999999999999885432211        13333


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|........++.+.+.....  .....+++..+. ....|.    .+.++|+||||+++|+..+.++|++++++++..
T Consensus        77 ~nc~~i~~g~~~d~~eidaas~--~gvd~ir~I~~~-~~~~P~----~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~  149 (486)
T PRK14953         77 ENCVEIDKGSFPDLIEIDAASN--RGIDDIRALRDA-VSYTPI----KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR  149 (486)
T ss_pred             HHHHHHhcCCCCcEEEEeCccC--CCHHHHHHHHHH-HHhCcc----cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence            2222333333444455533221  112223443333 333333    457899999999999999999999999999888


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      +.||+++++...++++++|||..+.|.+++.+++..++..++.++|+.++++++..++..++||+|.+++.|+.+...+
T Consensus       150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~  228 (486)
T PRK14953        150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYG  228 (486)
T ss_pred             eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            9999999998899999999999999999999999999999999999999999999999999999999999999886543

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.4e-34  Score=259.15  Aligned_cols=224  Identities=24%  Similarity=0.347  Sum_probs=183.9

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      +|.+||||++|++++||+.+++.|..++..++..| +||+||+|+||||+|+++|+.++|.........      .|+.|
T Consensus         5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~------~Cg~C   78 (620)
T PRK14948          5 PLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE------PCGKC   78 (620)
T ss_pred             hHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC------CCccc
Confidence            69999999999999999999999999999988766 999999999999999999999998643211111      14444


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+....+++.+++....  ......+++.+.... ..+.    .+.++|+||||+|+|+..+.++|++++|+++..
T Consensus        79 ~~C~~i~~g~h~D~~ei~~~~--~~~vd~IReii~~a~-~~p~----~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~  151 (620)
T PRK14948         79 ELCRAIAAGNALDVIEIDAAS--NTGVDNIRELIERAQ-FAPV----QARWKVYVIDECHMLSTAAFNALLKTLEEPPPR  151 (620)
T ss_pred             HHHHHHhcCCCccEEEEeccc--cCCHHHHHHHHHHHh-hChh----cCCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence            443444444555555554432  122334566665443 3332    457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.||++|+++..++++++|||..+.|.+++.+++..++.+++.++++.++++.+..+++.++|++|.+++.|+.+...
T Consensus       152 tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~  229 (620)
T PRK14948        152 VVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLL  229 (620)
T ss_pred             eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987543

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2e-34  Score=248.20  Aligned_cols=229  Identities=19%  Similarity=0.259  Sum_probs=183.5

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      ..++||||++|++++||+.+++.|++++.+++++| ++|+||+|+||||+|+++|+.++|+....-.-........|+.|
T Consensus         5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c   84 (397)
T PRK14955          5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC   84 (397)
T ss_pred             HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence            46899999999999999999999999999999999 99999999999999999999999964211000000001125555


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+.....++...+.....  .....+++....+. ..|.    .++++|+||||++.|+..+++.|++.+|+++..
T Consensus        85 ~~c~~~~~~~~~n~~~~~~~~~--~~id~Ir~l~~~~~-~~p~----~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~  157 (397)
T PRK14955         85 ESCRDFDAGTSLNISEFDAASN--NSVDDIRLLRENVR-YGPQ----KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPH  157 (397)
T ss_pred             HHHHHHhcCCCCCeEeeccccc--CCHHHHHHHHHHHh-hchh----cCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCC
Confidence            5555555555555555543221  22233444444443 2232    457899999999999999999999999999888


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      +.||+++++...+.++++|||..+.|.+++.+++.+++..++.++++.+++++++.++..++||+|.+++.|+.+..
T Consensus       158 t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~  234 (397)
T PRK14955        158 AIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIA  234 (397)
T ss_pred             eEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999998754

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3e-34  Score=256.99  Aligned_cols=222  Identities=23%  Similarity=0.357  Sum_probs=185.2

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|++++||+.+.+.|..++..++++| +||+||+|+||||+|+++|..+.|...+.   .    ...|+.|
T Consensus         6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~---~----~~~Cg~C   78 (614)
T PRK14971          6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTA---D----GEACNEC   78 (614)
T ss_pred             HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCC---C----CCCCCcc
Confidence            59999999999999999999999999999999999 99999999999999999999998865321   0    0125555


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+......+...+.+.+  ......+++.++.+.. .|.    .++++|+||||++.|+..++++|+++||+++..
T Consensus        79 ~sC~~~~~~~~~n~~~ld~~~--~~~vd~Ir~li~~~~~-~P~----~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~  151 (614)
T PRK14971         79 ESCVAFNEQRSYNIHELDAAS--NNSVDDIRNLIEQVRI-PPQ----IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY  151 (614)
T ss_pred             hHHHHHhcCCCCceEEecccc--cCCHHHHHHHHHHHhh-Ccc----cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence            544555544455555665432  1223345555544432 332    458899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      +.||+++++...+.++++|||.++.|.+++.+++..++..++.++|+.++++++..|+..++||+|.+++.|+.++.
T Consensus       152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~  228 (614)
T PRK14971        152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVS  228 (614)
T ss_pred             eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988653

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3.4e-34  Score=255.48  Aligned_cols=229  Identities=20%  Similarity=0.281  Sum_probs=184.7

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      .++||||++|++++||+.+++.|++++..++++| +||+||+|+||||+|+++|+.++|.....-..........|+.|.
T Consensus         6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~   85 (620)
T PRK14954          6 IARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE   85 (620)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence            5789999999999999999999999999999999 999999999999999999999999642110000000011255555


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~  161 (248)
                      .|..+......+...+....  ......+++.++.+.. .|.    .++++|+||||++.|+..++++|++++|+++..+
T Consensus        86 sC~~~~~g~~~n~~~~d~~s--~~~vd~Ir~l~e~~~~-~P~----~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~t  158 (620)
T PRK14954         86 SCRDFDAGTSLNISEFDAAS--NNSVDDIRQLRENVRY-GPQ----KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHA  158 (620)
T ss_pred             HHHHHhccCCCCeEEecccc--cCCHHHHHHHHHHHHh-hhh----cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCe
Confidence            55555566666655554322  1222335554444432 232    4578999999999999999999999999999989


Q ss_pred             eEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      .||+++++...+.++++|||.++.|.+++.+++..++..++.++|+.+++++++.++..++||+|.+++.|+.+..-
T Consensus       159 v~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y  235 (620)
T PRK14954        159 IFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAF  235 (620)
T ss_pred             EEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            99999999899999999999999999999999999999999999999999999999999999999999999977653

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=6.2e-34  Score=247.52  Aligned_cols=221  Identities=23%  Similarity=0.352  Sum_probs=177.9

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCccc-ceecccceeeccCC
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGS   79 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~-~~~~~~~~~~~~~~   79 (248)
                      .|++||||++|+|++||+.+++.|..++..++.+| +||+||+|+||||+|+++|+.+.|+.... ...        |+.
T Consensus         6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~--------c~~   77 (451)
T PRK06305          6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP--------CNQ   77 (451)
T ss_pred             HHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC--------Ccc
Confidence            48999999999999999999999999999999988 99999999999999999999998864321 111        333


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~  159 (248)
                      |..|..+......+.+.+....  ......++++...+.. .+.    .++++|+||||+|.|...+++.|++.+|+++.
T Consensus        78 c~~C~~i~~~~~~d~~~i~g~~--~~gid~ir~i~~~l~~-~~~----~~~~kvvIIdead~lt~~~~n~LLk~lEep~~  150 (451)
T PRK06305         78 CASCKEISSGTSLDVLEIDGAS--HRGIEDIRQINETVLF-TPS----KSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ  150 (451)
T ss_pred             cHHHHHHhcCCCCceEEeeccc--cCCHHHHHHHHHHHHh-hhh----cCCCEEEEEecHHhhCHHHHHHHHHHhhcCCC
Confidence            3332333333334445554321  1112234443333322 221    35789999999999999999999999999988


Q ss_pred             CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      .+.||+++++...+.++++|||..+.|++++.+++.+++..++.++|+.++++++..|+..++||+|.+++.++.+..
T Consensus       151 ~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~  228 (451)
T PRK06305        151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVG  228 (451)
T ss_pred             CceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999998763

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=8.4e-34  Score=251.60  Aligned_cols=221  Identities=20%  Similarity=0.274  Sum_probs=180.2

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++||||++|+|++||+.+++.|+.++..++.+| ++|+||+|+||||+|+++|+.++|........        |..|
T Consensus         5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~p--------C~~C   76 (563)
T PRK06647          5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMP--------CGEC   76 (563)
T ss_pred             HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCC--------Cccc
Confidence            47899999999999999999999999999999999 99999999999999999999998865332211        4444


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|.........+.+.+....  ......+++..+.+. ..|.    .++++|+||||+++|+..+.++|++.+|+++..
T Consensus        77 ~~C~~i~~~~~~dv~~idgas--~~~vddIr~l~e~~~-~~p~----~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~  149 (563)
T PRK06647         77 SSCKSIDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIM-FPPA----SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPY  149 (563)
T ss_pred             hHHHHHHcCCCCCeEEecCcc--cCCHHHHHHHHHHHH-hchh----cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCC
Confidence            433333333344444443321  111223444333332 2332    458899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      +.||++++++..+.++++|||..+.|.+++.+++.+++..++.++++.++++++..|+..++||+|.+++.|+.+..
T Consensus       150 ~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis  226 (563)
T PRK06647        150 IVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVS  226 (563)
T ss_pred             EEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987754

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=100.00  E-value=1.8e-33  Score=238.52  Aligned_cols=233  Identities=31%  Similarity=0.549  Sum_probs=174.0

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcc--cceecccceeeccC
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAG   78 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~--~~~~~~~~~~~~~~   78 (248)
                      |+|++||||++|++++|++.+++.|..++..++.++++|+||+||||||+|++++..+.+...+  .+.++...+.    
T Consensus         3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~----   78 (337)
T PRK12402          3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF----   78 (337)
T ss_pred             CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh----
Confidence            8999999999999999999999999999999888899999999999999999999988664311  1122211110    


Q ss_pred             CcccccceeeecccceeeeCCC--CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758           79 SRNIDLELTTLSSANHVELSPS--DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~  156 (248)
                        ... .......+.+..+...  ..+.......++.++......+.    ...+++++|||++.++...++.|+++++.
T Consensus        79 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vlilDe~~~l~~~~~~~L~~~le~  151 (337)
T PRK12402         79 --DQG-KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL----SADYKTILLDNAEALREDAQQALRRIMEQ  151 (337)
T ss_pred             --hcc-hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC----CCCCcEEEEeCcccCCHHHHHHHHHHHHh
Confidence              000 0000000000000000  00111112233333333333332    34678999999999999999999999998


Q ss_pred             hcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (248)
Q Consensus       157 ~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~  236 (248)
                      ++..+.+|++++++..+.+++++||..+.|.+++.+++..++..++.++++.+++++++.+++.++||+|.+++.|+.++
T Consensus       152 ~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~  231 (337)
T PRK12402        152 YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA  231 (337)
T ss_pred             ccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88778899999988889999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hhcccccC
Q 025758          237 VQQLRFTM  244 (248)
Q Consensus       237 ~~~~~~~~  244 (248)
                      .....++.
T Consensus       232 ~~~~~It~  239 (337)
T PRK12402        232 LAAGEITM  239 (337)
T ss_pred             HcCCCCCH
Confidence            54444543

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=100.00  E-value=4.1e-33  Score=237.92  Aligned_cols=223  Identities=25%  Similarity=0.375  Sum_probs=180.9

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      +|+|||||++|++++|++.+++.|..++..++.+| ++|+||+|+|||++|+.+++.+.|+.......        |..|
T Consensus         3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~--------c~~c   74 (355)
T TIGR02397         3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEP--------CNEC   74 (355)
T ss_pred             cHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCCC
Confidence            69999999999999999999999999999999988 89999999999999999999998874322111        3333


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|........++.+.+.+...  .....+++.++.+.. .|.    .++++|++|||+|.+...+.+.|++.+++++..
T Consensus        75 ~~c~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~p~----~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~  147 (355)
T TIGR02397        75 ESCKEINSGSSLDVIEIDAASN--NGVDDIREILDNVKY-APS----SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH  147 (355)
T ss_pred             HHHHHHhcCCCCCEEEeecccc--CCHHHHHHHHHHHhc-Ccc----cCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence            3333333334444555544321  122234455554432 222    457889999999999999999999999998888


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      +.+|++++++..+.++++|||..+.|++|+.+++.+++..++.++|+.++++++..+++.++||+|.+.+.++.+...+
T Consensus       148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~  226 (355)
T TIGR02397       148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFG  226 (355)
T ss_pred             eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Confidence            8899999998889999999999999999999999999999999999999999999999999999999999998877543

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=8.1e-33  Score=248.21  Aligned_cols=220  Identities=24%  Similarity=0.360  Sum_probs=179.3

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCc-ccceecccceeeccCCc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGA-EKVKVENKTWKIDAGSR   80 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~-~~~~~~~~~~~~~~~~~   80 (248)
                      |.+||||++|++++||+.+++.|..++..++.+| +||+||+|+||||+|+++|+.++|... .....        |+.|
T Consensus         6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~--------c~~c   77 (585)
T PRK14950          6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP--------CGTC   77 (585)
T ss_pred             HHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------CccC
Confidence            8899999999999999999999999999999988 899999999999999999999988653 11111        3333


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+....+.+.+.+.+..  ......++++++.+. ..+.    ...++|+||||+++|+..+.+.|++.+|+++..
T Consensus        78 ~~c~~i~~~~~~d~~~i~~~~--~~~vd~ir~ii~~~~-~~p~----~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~  150 (585)
T PRK14950         78 EMCRAIAEGSAVDVIEMDAAS--HTSVDDAREIIERVQ-FRPA----LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH  150 (585)
T ss_pred             HHHHHHhcCCCCeEEEEeccc--cCCHHHHHHHHHHHh-hCcc----cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCC
Confidence            333333333344445554421  122233455444333 2222    457899999999999999999999999999888


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      +.||+++++...+.++++|||..+.|.+++..++..++.+++.++++.++++++..|+..++||+|.+++.|+.+..
T Consensus       151 tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~  227 (585)
T PRK14950        151 AIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLAT  227 (585)
T ss_pred             eEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998765

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=100.00  E-value=1.8e-32  Score=230.73  Aligned_cols=212  Identities=39%  Similarity=0.694  Sum_probs=173.9

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      +|+|||||++|++++|++++++.+..++..+..++++|+||+|+||||+++.+++.+.++....                
T Consensus         6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~----------------   69 (319)
T PRK00440          6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRE----------------   69 (319)
T ss_pred             ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc----------------
Confidence            6999999999999999999999999999998888999999999999999999999885543110                


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~  161 (248)
                                 ..+.+...+..  ......+.+..+....+.   ....+++++|||++.+....++.|++.++.++..+
T Consensus        70 -----------~~i~~~~~~~~--~~~~~~~~i~~~~~~~~~---~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~  133 (319)
T PRK00440         70 -----------NFLELNASDER--GIDVIRNKIKEFARTAPV---GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNT  133 (319)
T ss_pred             -----------ceEEecccccc--chHHHHHHHHHHHhcCCC---CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCC
Confidence                       01223222211  111233444444443332   13467899999999999989999999999988888


Q ss_pred             eEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhccc
Q 025758          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR  241 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~  241 (248)
                      .+|++++....+.+++++||..+.|++++.+++..++..++.++++.+++++++.+++.++||+|.+++.|+.++..+..
T Consensus       134 ~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~  213 (319)
T PRK00440        134 RFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKE  213 (319)
T ss_pred             eEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988876544


Q ss_pred             ccCC
Q 025758          242 FTMP  245 (248)
Q Consensus       242 ~~~~  245 (248)
                      ++.+
T Consensus       214 it~~  217 (319)
T PRK00440        214 VTEE  217 (319)
T ss_pred             CCHH
Confidence            4443

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=7.4e-32  Score=230.91  Aligned_cols=210  Identities=28%  Similarity=0.424  Sum_probs=170.8

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      |.|++||||++|++++||+.+.+.+..+++.++.++ ++|+||+|+||||+|+.++..+.|+....-   +..+.     
T Consensus         5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~---~~~~~-----   76 (367)
T PRK14970          5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDP---NEDFS-----   76 (367)
T ss_pred             HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCCC-----
Confidence            689999999999999999999999999999998886 999999999999999999998877432100   00000     


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~  159 (248)
                                  ...+.+..  ........+.+.++.+.. .|.    .+++++++|||++.+...+.+.|++.+++++.
T Consensus        77 ------------~~~~~l~~--~~~~~~~~i~~l~~~~~~-~p~----~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~  137 (367)
T PRK14970         77 ------------FNIFELDA--ASNNSVDDIRNLIDQVRI-PPQ----TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPA  137 (367)
T ss_pred             ------------cceEEecc--ccCCCHHHHHHHHHHHhh-ccc----cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCC
Confidence                        00112211  111122334454544332 222    45788999999999999999999999999888


Q ss_pred             CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      .+.+|+++++...+.++++|||.++.|.+++.+++..++...+.++|+.+++++++.++..++||+|.+++.|+.++.
T Consensus       138 ~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~  215 (367)
T PRK14970        138 HAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVT  215 (367)
T ss_pred             ceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999999999999999999999999999999999999998874

>PRK04195 replication factor C large subunit; Provisional

Probab=100.00  E-value=4.5e-32  Score=239.13  Aligned_cols=203  Identities=30%  Similarity=0.449  Sum_probs=160.1

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhc---CC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~---~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      |+|+|||||+++++++|++.+++.|..|+..   |+ .++++|+||||+||||+|+++|..+..+               
T Consensus         2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~---------------   66 (482)
T PRK04195          2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWE---------------   66 (482)
T ss_pred             CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---------------
Confidence            8999999999999999999999999999864   33 4459999999999999999999976211               


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH----HHHHHHHH
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----EAQHSLRR  152 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----~~~~~ll~  152 (248)
                                       .+.+.+.+..  ....+...+.......+.   ....++||||||+|.|..    .+.+.|++
T Consensus        67 -----------------~ielnasd~r--~~~~i~~~i~~~~~~~sl---~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~  124 (482)
T PRK04195         67 -----------------VIELNASDQR--TADVIERVAGEAATSGSL---FGARRKLILLDEVDGIHGNEDRGGARAILE  124 (482)
T ss_pred             -----------------EEEEcccccc--cHHHHHHHHHHhhccCcc---cCCCCeEEEEecCcccccccchhHHHHHHH
Confidence                             1333332221  112233333333332221   113678999999999865    56788999


Q ss_pred             HHHHhcCCeeEEEEecCCCcccH-HHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHH
Q 025758          153 TMEKYSASCRLILCCNSSSKVTE-AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS  231 (248)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~~~~~-~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~  231 (248)
                      +++.  ....+|+++|++..+.. ++++||..+.|++|+.+++..++..++.++++.+++++++.|++.++||+|.+++.
T Consensus       125 ~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~  202 (482)
T PRK04195        125 LIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAIND  202 (482)
T ss_pred             HHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            9884  34679999999988776 89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcccc
Q 025758          232 FETCRVQQLRF  242 (248)
Q Consensus       232 l~~~~~~~~~~  242 (248)
                      |+.++.....+
T Consensus       203 Lq~~a~~~~~i  213 (482)
T PRK04195        203 LQAIAEGYGKL  213 (482)
T ss_pred             HHHHhcCCCCC
Confidence            99966543333

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=100.00  E-value=1.5e-31  Score=220.59  Aligned_cols=197  Identities=27%  Similarity=0.409  Sum_probs=158.6

Q ss_pred             CCccccCCCCCcccccccHHHH---HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~---~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~   77 (248)
                      |++++++||++++|++||++++   +.|.+.++.+++++++|+||||+||||+|++||+...+.                
T Consensus        12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~----------------   75 (436)
T COG2256          12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA----------------   75 (436)
T ss_pred             cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc----------------
Confidence            6889999999999999999998   488999999999999999999999999999999965221                


Q ss_pred             CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (248)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~  157 (248)
                                      +..++.-..++.+   +++.++.......     .+...|+||||+++++...|..|+..+|. 
T Consensus        76 ----------------f~~~sAv~~gvkd---lr~i~e~a~~~~~-----~gr~tiLflDEIHRfnK~QQD~lLp~vE~-  130 (436)
T COG2256          76 ----------------FEALSAVTSGVKD---LREIIEEARKNRL-----LGRRTILFLDEIHRFNKAQQDALLPHVEN-  130 (436)
T ss_pred             ----------------eEEeccccccHHH---HHHHHHHHHHHHh-----cCCceEEEEehhhhcChhhhhhhhhhhcC-
Confidence                            1344444444443   5555554433221     23567999999999999999999999995 


Q ss_pred             cCCeeEEEE--ec-CCC-cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH--cCCC-----CCHHHHHHHHHHccccHH
Q 025758          158 SASCRLILC--CN-SSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK--EGLQ-----LPSGFATRLAEKSNRSLR  226 (248)
Q Consensus       158 ~~~~~~Il~--t~-~~~-~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~--~~~~-----~~~~~~~~l~~~~~g~~r  226 (248)
                         +.+||+  |+ +|. .+.++|+|||+++.|.+++.+++..++++.+..  +++.     ++++++++++..++||+|
T Consensus       131 ---G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R  207 (436)
T COG2256         131 ---GTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR  207 (436)
T ss_pred             ---CeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence               344444  33 333 799999999999999999999999999994443  4554     789999999999999999


Q ss_pred             HHHHHHHHHhhhccc
Q 025758          227 RAILSFETCRVQQLR  241 (248)
Q Consensus       227 ~~~~~l~~~~~~~~~  241 (248)
                      .++|+|+.+......
T Consensus       208 ~aLN~LE~~~~~~~~  222 (436)
T COG2256         208 RALNLLELAALSAEP  222 (436)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999876653

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.97  E-value=2e-30  Score=218.01  Aligned_cols=198  Identities=30%  Similarity=0.493  Sum_probs=157.4

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      .+|+|||||++|++++|++++.+.+..+++.++.++ ++|+||+|+||||+|++++..+.. .                 
T Consensus         9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-~-----------------   70 (316)
T PHA02544          9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-E-----------------   70 (316)
T ss_pred             CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-c-----------------
Confidence            379999999999999999999999999999999888 666999999999999999986521 1                 


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC-CHHHHHHHHHHHHHhc
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-SREAQHSLRRTMEKYS  158 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-~~~~~~~ll~~le~~~  158 (248)
                                    ...+.+.. +.  ...+.+.+..+....+.    ...+++++|||+|.+ ...+++.|..++++++
T Consensus        71 --------------~~~i~~~~-~~--~~~i~~~l~~~~~~~~~----~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~  129 (316)
T PHA02544         71 --------------VLFVNGSD-CR--IDFVRNRLTRFASTVSL----TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS  129 (316)
T ss_pred             --------------ceEeccCc-cc--HHHHHHHHHHHHHhhcc----cCCCeEEEEECcccccCHHHHHHHHHHHHhcC
Confidence                          02223322 11  11223333333332221    236789999999999 6667788888899988


Q ss_pred             CCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHccccHHHHHHH
Q 025758          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLE-------FIAKKEGLQLPSGFATRLAEKSNRSLRRAILS  231 (248)
Q Consensus       159 ~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~-------~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~  231 (248)
                      .++.||+++|....+.++++|||..+.|+.|+.++...++.       .++.++++.++++++..+++...||.|.+++.
T Consensus       130 ~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~  209 (316)
T PHA02544        130 KNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINE  209 (316)
T ss_pred             CCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence            88899999999999999999999999999999888765543       34556799999999999999999999999999


Q ss_pred             HHHHhh
Q 025758          232 FETCRV  237 (248)
Q Consensus       232 l~~~~~  237 (248)
                      ++.+..
T Consensus       210 l~~~~~  215 (316)
T PHA02544        210 LQRYAS  215 (316)
T ss_pred             HHHHHc
Confidence            997764

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.97  E-value=3.5e-30  Score=216.98  Aligned_cols=221  Identities=21%  Similarity=0.348  Sum_probs=168.3

Q ss_pred             cCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758            6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus         6 ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      ..+|..+++++||+.+.+.|...+..|+.+| ++|+||+|+||||+|+.+|+.+.|.........+  ....|+.|..|.
T Consensus        16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~--~~~~~~~c~~c~   93 (351)
T PRK09112         16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET--LADPDPASPVWR   93 (351)
T ss_pred             CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc--cCCCCCCCHHHH
Confidence            4789999999999999999999999999999 9999999999999999999999985421111000  011122333333


Q ss_pred             ceeeecccceeeeCCC-Cc--C----cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758           85 ELTTLSSANHVELSPS-DA--G----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~-~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~  157 (248)
                      .+....+++...+..+ +.  +    ......+++..+.+... +    ..++++|+||||+|.|+.++.|+|+|++|++
T Consensus        94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~-~----~~g~~rVviIDeAd~l~~~aanaLLk~LEEp  168 (351)
T PRK09112         94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQT-S----GDGNWRIVIIDPADDMNRNAANAILKTLEEP  168 (351)
T ss_pred             HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhc-c----ccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence            3344455555444321 11  1    11223344434333322 2    2568899999999999999999999999999


Q ss_pred             cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHH
Q 025758          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (248)
Q Consensus       158 ~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~  235 (248)
                      +.++.||++++.+..++++++|||..++|++++.+++.++|.......+  ++++++..++..++|++|.++++++..
T Consensus       169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~~  244 (351)
T PRK09112        169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNYG  244 (351)
T ss_pred             CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999997544333  678999999999999999999998543

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.97  E-value=3.7e-29  Score=211.85  Aligned_cols=219  Identities=20%  Similarity=0.275  Sum_probs=167.4

Q ss_pred             CCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecc--cceeeccCCcccc
Q 025758            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN--KTWKIDAGSRNID   83 (248)
Q Consensus         7 y~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~--~~~~~~~~~~~~~   83 (248)
                      .+|.++++++||+.+++.|.+.+..++++| +||+||+|+||+++|+.+|+.++|+.......++  ..--..|+.|..|
T Consensus        13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c   92 (365)
T PRK07471         13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA   92 (365)
T ss_pred             CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence            699999999999999999999999999999 9999999999999999999999997632111100  0000113344444


Q ss_pred             cceeeecccceeeeCCC--CcC-----cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758           84 LELTTLSSANHVELSPS--DAG-----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~  156 (248)
                      ..+....+++...+.+.  +.+     ......++++...+. ..+    ..++++|+||||+|.|+..+.|+|+|++|+
T Consensus        93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~-~~~----~~~~~kVviIDead~m~~~aanaLLK~LEe  167 (365)
T PRK07471         93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFG-LTA----AEGGWRVVIVDTADEMNANAANALLKVLEE  167 (365)
T ss_pred             HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhC-cCc----ccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence            44555667776666542  211     112223444333332 222    256899999999999999999999999999


Q ss_pred             hcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (248)
Q Consensus       157 ~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~  234 (248)
                      ++.++.||++|+++..++++++|||..+.|++++.+++.++|....    ...+++.+..++..++|+++.++++++.
T Consensus       168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~s~Gsp~~Al~ll~~  241 (365)
T PRK07471        168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAALAEGSVGRALRLAGG  241 (365)
T ss_pred             CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999997532    2344555678899999999999988853

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]

Probab=99.97  E-value=3.9e-30  Score=206.22  Aligned_cols=212  Identities=31%  Similarity=0.453  Sum_probs=175.6

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      |+|+|||||.++.+++++++.+..+.++...++.||+||+||||+|||++..+.|..+.++.....              
T Consensus        29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~--------------   94 (360)
T KOG0990|consen   29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTS--------------   94 (360)
T ss_pred             CCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchh--------------
Confidence            789999999999999999999999999999999999999999999999999999998866421100              


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCC-CCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTK-GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~  159 (248)
                                  ...++..++..  +-..+++.+..++........ .....+++|+||+|.|..++||+|.+.++.+..
T Consensus        95 ------------m~lelnaSd~r--gid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~  160 (360)
T KOG0990|consen   95 ------------MLLELNASDDR--GIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTA  160 (360)
T ss_pred             ------------HHHHhhccCcc--CCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhcc
Confidence                        00222222211  111244445555543322111 123788999999999999999999999999999


Q ss_pred             CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      ++.|++++|++..+.++++|||..++|.+.+..+...++..+++.+....+++....++..+-||+|.++|.|+.....-
T Consensus       161 n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~  240 (360)
T KOG0990|consen  161 NTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKV  240 (360)
T ss_pred             ceEEEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887544


Q ss_pred             c
Q 025758          240 L  240 (248)
Q Consensus       240 ~  240 (248)
                      .
T Consensus       241 ~  241 (360)
T KOG0990|consen  241 M  241 (360)
T ss_pred             C
Confidence            3

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.97  E-value=4.6e-29  Score=212.87  Aligned_cols=202  Identities=22%  Similarity=0.371  Sum_probs=161.8

Q ss_pred             CcccccccHHHHHHHHHHhhcCC---------CCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758           11 TLDQVIVHQDIAQNLKKLVTEQD---------CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~~~~---------~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .|++++||+.+++.|++++..++         .+| ++|+||+|+|||++|+.+|+.++|.....         ..|+.|
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~---------~~Cg~C   73 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDE---------PGCGEC   73 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCC---------CCCCCC
Confidence            47899999999999999998876         778 99999999999999999999999976421         115555


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|..+....+++...+.++.. ......++++++.+.. .+.    .+.++|+||||+|.|++.++|.|+|++|+++.+
T Consensus        74 ~~C~~~~~~~hpD~~~i~~~~~-~i~i~~iR~l~~~~~~-~p~----~~~~kViiIDead~m~~~aanaLLk~LEep~~~  147 (394)
T PRK07940         74 RACRTVLAGTHPDVRVVAPEGL-SIGVDEVRELVTIAAR-RPS----TGRWRIVVIEDADRLTERAANALLKAVEEPPPR  147 (394)
T ss_pred             HHHHHHhcCCCCCEEEeccccc-cCCHHHHHHHHHHHHh-Ccc----cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC
Confidence            5545555555666555555432 2233345666655543 332    458899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHH
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF  232 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l  232 (248)
                      +.||++|+++..++++++|||..+.|++|+.+++.++|..   +.+  ++++.+..++..++|+++.++.++
T Consensus       148 ~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~  214 (394)
T PRK07940        148 TVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLA  214 (394)
T ss_pred             CeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence            9999999999999999999999999999999999998873   224  568888999999999998887665

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.97  E-value=9.7e-30  Score=197.25  Aligned_cols=190  Identities=24%  Similarity=0.343  Sum_probs=133.7

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhh-----cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~-----~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      .+.+++||++|+|++||++++..++-+++     +..++|++|+||||+||||+|+.+|.++...-              
T Consensus        13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~--------------   78 (233)
T PF05496_consen   13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF--------------   78 (233)
T ss_dssp             -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E--------------
T ss_pred             hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe--------------
Confidence            46789999999999999999998876553     24577899999999999999999999763211              


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~  156 (248)
                                        ...+..  ...........+   ..        .+...|+||||++++++..+..|+..+|+
T Consensus        79 ------------------~~~sg~--~i~k~~dl~~il---~~--------l~~~~ILFIDEIHRlnk~~qe~LlpamEd  127 (233)
T PF05496_consen   79 ------------------KITSGP--AIEKAGDLAAIL---TN--------LKEGDILFIDEIHRLNKAQQEILLPAMED  127 (233)
T ss_dssp             ------------------EEEECC--C--SCHHHHHHH---HT----------TT-EEEECTCCC--HHHHHHHHHHHHC
T ss_pred             ------------------Eeccch--hhhhHHHHHHHH---Hh--------cCCCcEEEEechhhccHHHHHHHHHHhcc
Confidence                              011110  011111122222   22        12456999999999999999999999997


Q ss_pred             hcC------------------CeeEEEEecCCCcccHHHhhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758          157 YSA------------------SCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (248)
Q Consensus       157 ~~~------------------~~~~Il~t~~~~~~~~~l~sR~~-~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l  217 (248)
                      ..-                  .-++|-+|+....+..++++|+- +.++..|+.+++.+|+.+-+...++.++++...+|
T Consensus       128 ~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~I  207 (233)
T PF05496_consen  128 GKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEI  207 (233)
T ss_dssp             SEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHH
T ss_pred             CeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence            531                  01267778888899999999995 56899999999999999888888999999999999


Q ss_pred             HHHccccHHHHHHHHHHHh
Q 025758          218 AEKSNRSLRRAILSFETCR  236 (248)
Q Consensus       218 ~~~~~g~~r~~~~~l~~~~  236 (248)
                      +.++.|++|-|.++|....
T Consensus       208 a~rsrGtPRiAnrll~rvr  226 (233)
T PF05496_consen  208 ARRSRGTPRIANRLLRRVR  226 (233)
T ss_dssp             HHCTTTSHHHHHHHHHHHC
T ss_pred             HHhcCCChHHHHHHHHHHH
Confidence            9999999999999998765

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.96  E-value=2.1e-28  Score=203.57  Aligned_cols=203  Identities=20%  Similarity=0.261  Sum_probs=154.3

Q ss_pred             CcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758           11 TLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (248)
                      .|++++||+.+++.|...+..++++| +||+||.|+||+++|+.+|..++|...             |+.|..|. ....
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~-------------c~~c~~~~-~~~~   67 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGS-------------PSKNIRRR-LEEG   67 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-------------CCCcHhcc-cccC
Confidence            58899999999999999999999888 999999999999999999999998762             21111111 2222


Q ss_pred             cccceeeeCCCC----c-----------------CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHH
Q 025758           90 SSANHVELSPSD----A-----------------GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQH  148 (248)
Q Consensus        90 ~~~~~~~~~~~~----~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~  148 (248)
                      .+++...+.|..    .                 .......++++.+. ....|.    .++++|+|||++|.|+..+.|
T Consensus        68 ~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~-l~~~p~----~~~~kVvII~~ae~m~~~aaN  142 (314)
T PRK07399         68 NHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRF-LSRPPL----EAPRKVVVIEDAETMNEAAAN  142 (314)
T ss_pred             CCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHH-HccCcc----cCCceEEEEEchhhcCHHHHH
Confidence            334433333311    0                 01111233443332 333333    568999999999999999999


Q ss_pred             HHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHH
Q 025758          149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA  228 (248)
Q Consensus       149 ~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~  228 (248)
                      +|+|++|+|+ ++.|||+|++++.++++++|||..++|++++.+++.++|......++..   .....++..++|+++.+
T Consensus       143 aLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~a  218 (314)
T PRK07399        143 ALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAA  218 (314)
T ss_pred             HHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHH
Confidence            9999999999 7899999999999999999999999999999999999999765433322   23578889999999999


Q ss_pred             HHHHHHHh
Q 025758          229 ILSFETCR  236 (248)
Q Consensus       229 ~~~l~~~~  236 (248)
                      ++.++...
T Consensus       219 l~~l~~~~  226 (314)
T PRK07399        219 IANIEQLQ  226 (314)
T ss_pred             HHHHHHHH
Confidence            99887543

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.96  E-value=8.8e-29  Score=214.44  Aligned_cols=195  Identities=26%  Similarity=0.404  Sum_probs=151.8

Q ss_pred             CccccCCCCCcccccccHHHHHH---HHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQN---LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~---l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~   78 (248)
                      +|++||||++|++++||++++..   |.+++..+..++++|+||+|+||||+|+.++..+...                 
T Consensus         1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-----------------   63 (413)
T PRK13342          1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-----------------   63 (413)
T ss_pred             ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----------------
Confidence            69999999999999999999766   9999998888889999999999999999999865211                 


Q ss_pred             CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~  158 (248)
                                     ++.+.....+.   ..+++.++.......     .+...+++|||++.++...++.|++.+++. 
T Consensus        64 ---------------~~~l~a~~~~~---~~ir~ii~~~~~~~~-----~g~~~vL~IDEi~~l~~~~q~~LL~~le~~-  119 (413)
T PRK13342         64 ---------------FEALSAVTSGV---KDLREVIEEARQRRS-----AGRRTILFIDEIHRFNKAQQDALLPHVEDG-  119 (413)
T ss_pred             ---------------EEEEecccccH---HHHHHHHHHHHHhhh-----cCCceEEEEechhhhCHHHHHHHHHHhhcC-
Confidence                           12222222211   123444444332111     235679999999999999999999999862 


Q ss_pred             CCeeEEEEecC-C-CcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          159 ASCRLILCCNS-S-SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE--GL-QLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       159 ~~~~~Il~t~~-~-~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~--~~-~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                       ...+|.+++. + ..+.++++|||..+.|.+++.+++..++.+.+...  ++ .+++++++.+++.++||+|.+++.|+
T Consensus       120 -~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le  198 (413)
T PRK13342        120 -TITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE  198 (413)
T ss_pred             -cEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence             2344444433 2 36889999999999999999999999999987763  54 78999999999999999999999999


Q ss_pred             HHhhh
Q 025758          234 TCRVQ  238 (248)
Q Consensus       234 ~~~~~  238 (248)
                      .+...
T Consensus       199 ~~~~~  203 (413)
T PRK13342        199 LAALG  203 (413)
T ss_pred             HHHHc
Confidence            88654

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=99.96  E-value=2.1e-28  Score=205.15  Aligned_cols=200  Identities=20%  Similarity=0.218  Sum_probs=164.0

Q ss_pred             cccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758           16 IVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH   94 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (248)
                      ..++..++.|.+.+..++++| ++|+||+|+||+++|+.+|+.++|.......        .|+.|..|..+....+++.
T Consensus         5 PWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~--------~Cg~C~sC~~~~~g~HPD~   76 (334)
T PRK07993          5 PWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK--------SCGHCRGCQLMQAGTHPDY   76 (334)
T ss_pred             CCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC--------CCCCCHHHHHHHcCCCCCE
Confidence            357788999999999999999 9999999999999999999999997543211        2666666666667778887


Q ss_pred             eeeCCCCc-CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcc
Q 025758           95 VELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (248)
Q Consensus        95 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~  173 (248)
                      ..+.++.. .......+++..+.+.... .    .++++|+|||++|.|+.++.|+|+|++|||+.++.|||+|++++.+
T Consensus        77 ~~i~p~~~~~~I~idqiR~l~~~~~~~~-~----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l  151 (334)
T PRK07993         77 YTLTPEKGKSSLGVDAVREVTEKLYEHA-R----LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARL  151 (334)
T ss_pred             EEEecccccccCCHHHHHHHHHHHhhcc-c----cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence            77766543 2344555666665555433 2    5689999999999999999999999999999999999999999999


Q ss_pred             cHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       174 ~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      +++++|||+.+.|++|+.++...+|..     ...++++....++..++|++..++++++
T Consensus       152 LpTIrSRCq~~~~~~~~~~~~~~~L~~-----~~~~~~~~a~~~~~la~G~~~~Al~l~~  206 (334)
T PRK07993        152 LATLRSRCRLHYLAPPPEQYALTWLSR-----EVTMSQDALLAALRLSAGAPGAALALLQ  206 (334)
T ss_pred             hHHHHhccccccCCCCCHHHHHHHHHH-----ccCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence            999999999999999999999999973     2245677788889999999999888764

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.96  E-value=1.3e-27  Score=198.40  Aligned_cols=200  Identities=20%  Similarity=0.193  Sum_probs=159.8

Q ss_pred             cccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758           16 IVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH   94 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (248)
                      ..+...++.|.+.+..++.+| ++|+||.|+||+++|+.+|+.++|.......        .|+.|..|..+....+++.
T Consensus         5 PW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~--------~Cg~C~sC~~~~~g~HPD~   76 (325)
T PRK06871          5 PWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ--------PCGQCHSCHLFQAGNHPDF   76 (325)
T ss_pred             cchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC--------CCCCCHHHHHHhcCCCCCE
Confidence            457888999999999999999 9999999999999999999999997643211        2666666666677778887


Q ss_pred             eeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCccc
Q 025758           95 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT  174 (248)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~  174 (248)
                      ..+.+..........+++..+.+.... .    .+..+|+|||++|.|+.++.|+|+|++|+|+.++.||++|+++..++
T Consensus        77 ~~i~p~~~~~I~id~iR~l~~~~~~~~-~----~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~ll  151 (325)
T PRK06871         77 HILEPIDNKDIGVDQVREINEKVSQHA-Q----QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALL  151 (325)
T ss_pred             EEEccccCCCCCHHHHHHHHHHHhhcc-c----cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCc
Confidence            777664333344445666555444333 2    56889999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       175 ~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      ++++|||+.+.|++++.+++..+|....     ..+++.+..++..++|++..++++++
T Consensus       152 pTI~SRC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~  205 (325)
T PRK06871        152 PTIYSRCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLE  205 (325)
T ss_pred             hHHHhhceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhh
Confidence            9999999999999999999999998543     22344466667788888877776653

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.96  E-value=6.7e-28  Score=218.85  Aligned_cols=197  Identities=21%  Similarity=0.303  Sum_probs=150.4

Q ss_pred             CCccccCCCCCcccccccHHHHH---HHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQ---NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~---~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~   77 (248)
                      ++|++||||++|+|++||+.++.   .|.+.+..++.++++|+||||+||||+|++++..+.+.-               
T Consensus        16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f---------------   80 (725)
T PRK13341         16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF---------------   80 (725)
T ss_pred             CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcc---------------
Confidence            48999999999999999999884   788888888999999999999999999999998652110               


Q ss_pred             CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (248)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~  157 (248)
                                       +.+.....+.   ....+.+.........    .+...++||||+|.++...++.|++.+++.
T Consensus        81 -----------------~~lna~~~~i---~dir~~i~~a~~~l~~----~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g  136 (725)
T PRK13341         81 -----------------SSLNAVLAGV---KDLRAEVDRAKERLER----HGKRTILFIDEVHRFNKAQQDALLPWVENG  136 (725)
T ss_pred             -----------------eeehhhhhhh---HHHHHHHHHHHHHhhh----cCCceEEEEeChhhCCHHHHHHHHHHhcCc
Confidence                             1111111111   1123333332221111    224679999999999999999999988852


Q ss_pred             cCCeeEEEEecCC--CcccHHHhhhhheeeecCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHccccHHHH
Q 025758          158 SASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-------KEGLQLPSGFATRLAEKSNRSLRRA  228 (248)
Q Consensus       158 ~~~~~~Il~t~~~--~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~-------~~~~~~~~~~~~~l~~~~~g~~r~~  228 (248)
                        ...+|..++..  ..+.+++.|||.++.|++++.+++..++.+.+.       .+++.+++++++.|++.++||+|.+
T Consensus       137 --~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l  214 (725)
T PRK13341        137 --TITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL  214 (725)
T ss_pred             --eEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence              23334333332  358899999999999999999999999999987       4578899999999999999999999


Q ss_pred             HHHHHHHhhh
Q 025758          229 ILSFETCRVQ  238 (248)
Q Consensus       229 ~~~l~~~~~~  238 (248)
                      ++.|+.++..
T Consensus       215 ln~Le~a~~~  224 (725)
T PRK13341        215 LNALELAVES  224 (725)
T ss_pred             HHHHHHHHHh
Confidence            9999997753

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.96  E-value=2.6e-27  Score=198.56  Aligned_cols=190  Identities=18%  Similarity=0.352  Sum_probs=152.1

Q ss_pred             CCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758           10 KTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (248)
                      |+|++++||+.+++.|..++..++.+| ++|+||+|+||||+|+.+|+.+.|.....                       
T Consensus         1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~-----------------------   57 (313)
T PRK05564          1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQR-----------------------   57 (313)
T ss_pred             CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCC-----------------------
Confidence            679999999999999999999999999 89999999999999999999998865321                       


Q ss_pred             ecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEec
Q 025758           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN  168 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~  168 (248)
                       .+++...+.+.+........+++.++.+. ..|.    .++++|+|||++|.|+.++.|+|+|++|+|+.++.||++|+
T Consensus        58 -~h~D~~~~~~~~~~~i~v~~ir~~~~~~~-~~p~----~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~  131 (313)
T PRK05564         58 -EYVDIIEFKPINKKSIGVDDIRNIIEEVN-KKPY----EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCE  131 (313)
T ss_pred             -CCCCeEEeccccCCCCCHHHHHHHHHHHh-cCcc----cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence             01122233332222233344666555443 3333    56899999999999999999999999999999999999999


Q ss_pred             CCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHH
Q 025758          169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF  232 (248)
Q Consensus       169 ~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l  232 (248)
                      +++.++++++|||..+.|.+++.+++..++...+.    .++++.+..++..++|++..+...+
T Consensus       132 ~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~  191 (313)
T PRK05564        132 NLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFI  191 (313)
T ss_pred             ChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence            99999999999999999999999999999975442    4567788888888888877766543

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.96  E-value=3.5e-27  Score=195.65  Aligned_cols=195  Identities=21%  Similarity=0.279  Sum_probs=150.5

Q ss_pred             ccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      .+..+++.|...+..++++| ++|+||+|+||+++|+.+|..++|.....           ++.|.+|.-+....+++..
T Consensus         8 W~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~-----------~~~c~~c~~~~~g~HPD~~   76 (319)
T PRK08769          8 WQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDP-----------AAAQRTRQLIAAGTHPDLQ   76 (319)
T ss_pred             cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCC-----------CCcchHHHHHhcCCCCCEE
Confidence            47889999999999999999 99999999999999999999999975321           2222222233444566665


Q ss_pred             ee--CCCCcCc-----chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEec
Q 025758           96 EL--SPSDAGF-----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN  168 (248)
Q Consensus        96 ~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~  168 (248)
                      .+  .++..+.     .....++++.+.+.. .+.    .++.+|+|||++|.|+.++.|+|+|++|+|+.++.||++|+
T Consensus        77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~-~p~----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~  151 (319)
T PRK08769         77 LVSFIPNRTGDKLRTEIVIEQVREISQKLAL-TPQ----YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISA  151 (319)
T ss_pred             EEecCCCcccccccccccHHHHHHHHHHHhh-Ccc----cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEEC
Confidence            55  4443321     123334444443332 232    45789999999999999999999999999999999999999


Q ss_pred             CCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       169 ~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      ++..++++++|||..+.|++|+.++..++|..    .+  ++++....++..++|++..++..++
T Consensus       152 ~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~  210 (319)
T PRK08769        152 QPARLPATIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLR  210 (319)
T ss_pred             ChhhCchHHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence            99999999999999999999999999999973    23  4566666778888898888877653

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.96  E-value=3e-27  Score=197.69  Aligned_cols=194  Identities=22%  Similarity=0.278  Sum_probs=153.0

Q ss_pred             HHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758           23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (248)
Q Consensus        23 ~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (248)
                      ..+++++..++.+| ++|+||+|+||+++|+.+|+.++|.......        .|+.|..|..+....+++...+.+++
T Consensus        10 ~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~--------~Cg~C~sC~~~~~g~HPD~~~i~~~~   81 (328)
T PRK05707         10 SLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG--------ACGSCKGCQLLRAGSHPDNFVLEPEE   81 (328)
T ss_pred             HHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC--------CCCCCHHHHHHhcCCCCCEEEEeccC
Confidence            34445566689999 9999999999999999999999997643221        25666655566666778877777754


Q ss_pred             cC-cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhh
Q 025758          102 AG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (248)
Q Consensus       102 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR  180 (248)
                      .+ ......+++..+.+.. .+.    .++.+|+|||++|.|+.++.|+|+|++|+|+.++.||++|+++..++++++||
T Consensus        82 ~~~~i~id~iR~l~~~~~~-~~~----~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR  156 (328)
T PRK05707         82 ADKTIKVDQVRELVSFVVQ-TAQ----LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR  156 (328)
T ss_pred             CCCCCCHHHHHHHHHHHhh-ccc----cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh
Confidence            32 2344556666555544 332    45889999999999999999999999999999999999999999999999999


Q ss_pred             hheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       181 ~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      |+.+.|++|+.++..++|.....    ..+++....++..++|++..++.+++
T Consensus       157 c~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~  205 (328)
T PRK05707        157 CQQQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHE  205 (328)
T ss_pred             ceeeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHC
Confidence            99999999999999999975431    23466677788899999988877654

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.96  E-value=2.9e-27  Score=206.89  Aligned_cols=207  Identities=25%  Similarity=0.388  Sum_probs=163.2

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhh--------------------------------cCCCCe--eEEECCCCCCH
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT--------------------------------EQDCPH--LLFYGPPGSGK   47 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~--------------------------------~~~~~~--ill~Gp~G~GK   47 (248)
                      +|||||+|+.|.||+|.+.+.+.+-.|++                                .++++.  +||+||||.||
T Consensus       260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK  339 (877)
T KOG1969|consen  260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK  339 (877)
T ss_pred             eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence            69999999999999996666555555542                                123333  89999999999


Q ss_pred             HHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCC
Q 025758           48 KTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKG  127 (248)
Q Consensus        48 Ttla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (248)
                      ||+|+.+|++.     |                   |+        -+++++++....  .++.+.+.......+. +.+
T Consensus       340 TTLAHViAkqa-----G-------------------Ys--------VvEINASDeRt~--~~v~~kI~~avq~~s~-l~a  384 (877)
T KOG1969|consen  340 TTLAHVIAKQA-----G-------------------YS--------VVEINASDERTA--PMVKEKIENAVQNHSV-LDA  384 (877)
T ss_pred             hHHHHHHHHhc-----C-------------------ce--------EEEecccccccH--HHHHHHHHHHHhhccc-ccc
Confidence            99999999964     1                   11        156666554432  2344445544443322 334


Q ss_pred             CCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------CC---------------eeEEEEecCCC-cccHHHhhhhheee
Q 025758          128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------AS---------------CRLILCCNSSS-KVTEAIRSRCLNIR  185 (248)
Q Consensus       128 ~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------~~---------------~~~Il~t~~~~-~~~~~l~sR~~~i~  185 (248)
                      .+.|.+++|||||+-++.+.+.++++++.-.      ++               .+||||||+.. ..+.+|+.-+.++.
T Consensus       385 dsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~  464 (877)
T KOG1969|consen  385 DSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIA  464 (877)
T ss_pred             CCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEE
Confidence            5789999999999999999999999997321      11               24999999987 57888888999999


Q ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhccccc
Q 025758          186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFT  243 (248)
Q Consensus       186 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~  243 (248)
                      |.+|....+.++|+.+|.+|++..+..++..|++.+.+|+|..||.||++.....+.+
T Consensus       465 f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~d  522 (877)
T KOG1969|consen  465 FVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRD  522 (877)
T ss_pred             ecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999999999999998888753

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.95  E-value=5.8e-27  Score=197.06  Aligned_cols=203  Identities=22%  Similarity=0.322  Sum_probs=156.7

Q ss_pred             CCcccccc-cHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758           10 KTLDQVIV-HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        10 ~~~~~lig-~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      +.|+.++| |+.+++.|...+..++++| ++|+||+|+||+++|+.+|+.+.|+.......        |+.|..|..+.
T Consensus         2 ~~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~--------cg~C~~c~~~~   73 (329)
T PRK08058          2 MTWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP--------CGTCTNCKRID   73 (329)
T ss_pred             CcHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC--------CCcCHHHHHHh
Confidence            36888999 9999999999999999999 79999999999999999999999976322111        44444444444


Q ss_pred             eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC  167 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t  167 (248)
                      ...+++...+.+.+ .......+++.++.+... +.    .++++|+||||+|.|+.+++|+|+|++|+|+.++.||++|
T Consensus        74 ~~~hpD~~~i~~~~-~~i~id~ir~l~~~~~~~-~~----~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t  147 (329)
T PRK08058         74 SGNHPDVHLVAPDG-QSIKKDQIRYLKEEFSKS-GV----ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLT  147 (329)
T ss_pred             cCCCCCEEEecccc-ccCCHHHHHHHHHHHhhC-Cc----ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEe
Confidence            44556655555542 223334455555544432 22    4578999999999999999999999999999999999999


Q ss_pred             cCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          168 NSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       168 ~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      +++..++++++|||..+.|.+++.+++.+++.    +++  ++++....++.. .|+++.++.+++
T Consensus       148 ~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~-~g~~~~A~~l~~  206 (329)
T PRK08058        148 ENKHQILPTILSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGL-TNSVEEALALSE  206 (329)
T ss_pred             CChHhCcHHHHhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHH-cCCHHHHHHHhc
Confidence            99999999999999999999999999988886    345  445555566555 467888877654

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=99.95  E-value=7.7e-27  Score=193.40  Aligned_cols=196  Identities=16%  Similarity=0.244  Sum_probs=157.0

Q ss_pred             cccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758           16 IVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH   94 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (248)
                      ..+...++.|.+.+..++++| ++|+||.|+||+++|+.+|+.+.|.+.+. .        .|+.|..|.......+++.
T Consensus         6 PWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-~--------~Cg~C~sC~~~~~g~HPD~   76 (319)
T PRK06090          6 PWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-E--------ACGFCHSCELMQSGNHPDL   76 (319)
T ss_pred             ccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-C--------CCCCCHHHHHHHcCCCCCE
Confidence            457888999999999999999 99999999999999999999999987421 1        2666666666677778888


Q ss_pred             eeeCCCCcC-cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcc
Q 025758           95 VELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (248)
Q Consensus        95 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~  173 (248)
                      ..+.++..+ ......+++..+.+. ..+.    .++++|+|||++|.|+.++.|+|+|++|||+.++.||++|++++.+
T Consensus        77 ~~i~p~~~~~~I~vdqiR~l~~~~~-~~~~----~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l  151 (319)
T PRK06090         77 HVIKPEKEGKSITVEQIRQCNRLAQ-ESSQ----LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRL  151 (319)
T ss_pred             EEEecCcCCCcCCHHHHHHHHHHHh-hCcc----cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence            777775432 234444555443333 2332    5688999999999999999999999999999999999999999999


Q ss_pred             cHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       174 ~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      +++++|||+.+.|++|+.++..++|..    .++.    ....++..++|++..++.+++
T Consensus       152 LpTI~SRCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~  203 (319)
T PRK06090        152 LPTIVSRCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK  203 (319)
T ss_pred             hHHHHhcceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence            999999999999999999999999863    3433    234667788888888887764

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.94  E-value=8.3e-26  Score=190.60  Aligned_cols=190  Identities=24%  Similarity=0.315  Sum_probs=147.4

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhc----C-CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~----~-~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      +|-++|||.+|++++|+++.++.+..++..    + ..++++|+||+|+|||++|+.+|..+...-           .  
T Consensus        14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~-----------~--   80 (328)
T PRK00080         14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI-----------R--   80 (328)
T ss_pred             hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe-----------E--
Confidence            467899999999999999999988877652    3 345699999999999999999999763210           0  


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~  156 (248)
                                         .......  .........+.   .        ...+.+++|||++.+....++.++..+++
T Consensus        81 -------------------~~~~~~~--~~~~~l~~~l~---~--------l~~~~vl~IDEi~~l~~~~~e~l~~~~e~  128 (328)
T PRK00080         81 -------------------ITSGPAL--EKPGDLAAILT---N--------LEEGDVLFIDEIHRLSPVVEEILYPAMED  128 (328)
T ss_pred             -------------------EEecccc--cChHHHHHHHH---h--------cccCCEEEEecHhhcchHHHHHHHHHHHh
Confidence                               0000000  00011222222   1        12457999999999998888888888886


Q ss_pred             hcC------------------CeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758          157 YSA------------------SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (248)
Q Consensus       157 ~~~------------------~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l  217 (248)
                      ...                  ...+|.+|+....+.++++||| ..+.|++|+.+++.+++.+.+...++.++++++.+|
T Consensus       129 ~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~i  208 (328)
T PRK00080        129 FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEI  208 (328)
T ss_pred             cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence            531                  1346778888888999999998 679999999999999999999999999999999999


Q ss_pred             HHHccccHHHHHHHHHHHh
Q 025758          218 AEKSNRSLRRAILSFETCR  236 (248)
Q Consensus       218 ~~~~~g~~r~~~~~l~~~~  236 (248)
                      ++.++|++|.+.+.++...
T Consensus       209 a~~~~G~pR~a~~~l~~~~  227 (328)
T PRK00080        209 ARRSRGTPRIANRLLRRVR  227 (328)
T ss_pred             HHHcCCCchHHHHHHHHHH
Confidence            9999999999999998755

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.94  E-value=3.8e-26  Score=173.25  Aligned_cols=160  Identities=31%  Similarity=0.480  Sum_probs=115.7

Q ss_pred             ccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      ||+.+++.|...+..++++| ++|+||+|+||+++|+.+|..++|......         .|+.+..|........++..
T Consensus         1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~---------~c~~c~~c~~~~~~~~~d~~   71 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED---------PCGECRSCRRIEEGNHPDFI   71 (162)
T ss_dssp             S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT-----------SSSHHHHHHHTT-CTTEE
T ss_pred             CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC---------CCCCCHHHHHHHhccCcceE
Confidence            79999999999999999999 899999999999999999999999876432         13334333334444566666


Q ss_pred             eeCCCCcC-cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCccc
Q 025758           96 ELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT  174 (248)
Q Consensus        96 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~  174 (248)
                      .+.+.... ......+++....+. ..+.    .+.++|+||||+|.|+.+++|+|+|+||+|+.++.|||+|+++..++
T Consensus        72 ~~~~~~~~~~i~i~~ir~i~~~~~-~~~~----~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il  146 (162)
T PF13177_consen   72 IIKPDKKKKSIKIDQIREIIEFLS-LSPS----EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKIL  146 (162)
T ss_dssp             EEETTTSSSSBSHHHHHHHHHHCT-SS-T----TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-
T ss_pred             EEecccccchhhHHHHHHHHHHHH-HHHh----cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHCh
Confidence            66665442 233344554444332 2222    46899999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhheeeecCCC
Q 025758          175 EAIRSRCLNIRINSPT  190 (248)
Q Consensus       175 ~~l~sR~~~i~~~~~~  190 (248)
                      ++++|||+.++|++++
T Consensus       147 ~TI~SRc~~i~~~~ls  162 (162)
T PF13177_consen  147 PTIRSRCQVIRFRPLS  162 (162)
T ss_dssp             HHHHTTSEEEEE----
T ss_pred             HHHHhhceEEecCCCC
Confidence            9999999999998764

...

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=99.94  E-value=2.5e-26  Score=187.36  Aligned_cols=197  Identities=22%  Similarity=0.384  Sum_probs=153.7

Q ss_pred             CccccCCCCCcccccccHHHHH---HHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQ---NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~---~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~   78 (248)
                      +++|++||++++|.+||++++.   .|...++.+++|.++|+||||+||||+|+.|+..-..+.                
T Consensus       127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----------------  190 (554)
T KOG2028|consen  127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----------------  190 (554)
T ss_pred             ChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----------------
Confidence            6789999999999999999874   677888999999999999999999999999997321111                


Q ss_pred             CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~  158 (248)
                                   ..++++........+   ++++++...+....    .....|+||||+++++...|..|+..+|.. 
T Consensus       191 -------------yrfvelSAt~a~t~d---vR~ife~aq~~~~l----~krkTilFiDEiHRFNksQQD~fLP~VE~G-  249 (554)
T KOG2028|consen  191 -------------YRFVELSATNAKTND---VRDIFEQAQNEKSL----TKRKTILFIDEIHRFNKSQQDTFLPHVENG-  249 (554)
T ss_pred             -------------eEEEEEeccccchHH---HHHHHHHHHHHHhh----hcceeEEEeHHhhhhhhhhhhcccceeccC-
Confidence                         123566655554443   56666655544332    346679999999999999999999999852 


Q ss_pred             CCeeEEEEecCC-C-cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----c---------CCCCCHHHHHHHHHHccc
Q 025758          159 ASCRLILCCNSS-S-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----E---------GLQLPSGFATRLAEKSNR  223 (248)
Q Consensus       159 ~~~~~Il~t~~~-~-~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~---------~~~~~~~~~~~l~~~~~g  223 (248)
                       ...+|-.|++. . .+..+|.|||.++.+.++..+.+..+|.+-+..    +         .+.+++.++++++..++|
T Consensus       250 -~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG  328 (554)
T KOG2028|consen  250 -DITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG  328 (554)
T ss_pred             -ceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence             23444444433 3 688899999999999999999999999985541    1         123778999999999999


Q ss_pred             cHHHHHHHHHHHh
Q 025758          224 SLRRAILSFETCR  236 (248)
Q Consensus       224 ~~r~~~~~l~~~~  236 (248)
                      |.|.++|.|+-..
T Consensus       329 DaR~aLN~Lems~  341 (554)
T KOG2028|consen  329 DARAALNALEMSL  341 (554)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999998874

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.94  E-value=4e-25  Score=175.03  Aligned_cols=187  Identities=23%  Similarity=0.365  Sum_probs=148.2

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHhh-----cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~~-----~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      ...||++|+|++||+++++.|+-+++     +..+.|++|+||||.||||+|+.+|.++...                  
T Consensus        18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn------------------   79 (332)
T COG2255          18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN------------------   79 (332)
T ss_pred             cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC------------------
Confidence            45799999999999999999987764     2336689999999999999999999987211                  


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~  159 (248)
                                     +.... .+....   ..+....+..        ....+|+||||++++++...+.|+..+|++.-
T Consensus        80 ---------------~k~ts-Gp~leK---~gDlaaiLt~--------Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~l  132 (332)
T COG2255          80 ---------------LKITS-GPALEK---PGDLAAILTN--------LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRL  132 (332)
T ss_pred             ---------------eEecc-cccccC---hhhHHHHHhc--------CCcCCeEEEehhhhcChhHHHHhhhhhhheeE
Confidence                           01100 000111   2222332332        33678999999999999999999999998641


Q ss_pred             C----------------e--eEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025758          160 S----------------C--RLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK  220 (248)
Q Consensus       160 ~----------------~--~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~  220 (248)
                      .                .  ++|-.|+....+..+|++|+ ...++..|+.+++..|+.+-+..-++.++++....|+++
T Consensus       133 DI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r  212 (332)
T COG2255         133 DIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARR  212 (332)
T ss_pred             EEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh
Confidence            1                1  25666777788999999999 889999999999999999999889999999999999999


Q ss_pred             ccccHHHHHHHHHHHh
Q 025758          221 SNRSLRRAILSFETCR  236 (248)
Q Consensus       221 ~~g~~r~~~~~l~~~~  236 (248)
                      +.|.+|-|.++|....
T Consensus       213 SRGTPRIAnRLLrRVR  228 (332)
T COG2255         213 SRGTPRIANRLLRRVR  228 (332)
T ss_pred             ccCCcHHHHHHHHHHH
Confidence            9999999999997655

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.94  E-value=1.2e-25  Score=189.71  Aligned_cols=204  Identities=28%  Similarity=0.437  Sum_probs=156.2

Q ss_pred             ccccccHHHHHHHHHHhh-cCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec
Q 025758           13 DQVIVHQDIAQNLKKLVT-EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~-~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (248)
                      +++++++.+...+..|.. .++.+| +||+||+|+||||+|.++|+.++|........++        .+..|.......
T Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~--------~~~~~~~~~~~~   72 (325)
T COG0470           1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCG--------HCRSCKLIPAGN   72 (325)
T ss_pred             CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCccc--------chhhhhHHhhcC
Confidence            367888888888888877 677999 9999999999999999999999988765432222        112223344445


Q ss_pred             ccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC
Q 025758           91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS  170 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~  170 (248)
                      +++...+.+++.....  ...+.++.+....... ...++.+|+||||+|.|+.++++++++++|+++.++.||++||++
T Consensus        73 ~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~-~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~  149 (325)
T COG0470          73 HPDFLELNPSDLRKID--IIVEQVRELAEFLSES-PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP  149 (325)
T ss_pred             CCceEEecccccCCCc--chHHHHHHHHHHhccC-CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence            6677888887765542  2233344443322221 114688999999999999999999999999999999999999999


Q ss_pred             CcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       171 ~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      ..++++++|||..+.|++++.......++           ++.+..++..+.||+|.+++.++.....
T Consensus       150 ~~il~tI~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~  206 (325)
T COG0470         150 SKILPTIRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL  206 (325)
T ss_pred             hhccchhhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence            99999999999999999844443333333           6778999999999999999999988764

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.93  E-value=4.3e-25  Score=172.15  Aligned_cols=186  Identities=23%  Similarity=0.327  Sum_probs=139.9

Q ss_pred             HHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758           23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (248)
Q Consensus        23 ~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (248)
                      +.|.+.+..++++| ++|+||+|+|||++|+.++..+.|........        |..+..|........++...+.+..
T Consensus         2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~--------c~~~~~c~~~~~~~~~d~~~~~~~~   73 (188)
T TIGR00678         2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEP--------CGECPSCRLIEAGNHPDLHRLEPEG   73 (188)
T ss_pred             hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHHcCCCCcEEEecccc
Confidence            46778888899988 99999999999999999999998863221111        2222222222222333333333322


Q ss_pred             cCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          102 AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                       .......+++.++.+.. .+.    .++++|+||||++.|+..+++.|++.+|+++..+.||++++++..+.++++|||
T Consensus        74 -~~~~~~~i~~i~~~~~~-~~~----~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~  147 (188)
T TIGR00678        74 -QSIKVDQVRELVEFLSR-TPQ----ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRC  147 (188)
T ss_pred             -CcCCHHHHHHHHHHHcc-Ccc----cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhc
Confidence             22233345554554443 222    457899999999999999999999999999988999999999899999999999


Q ss_pred             heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHH
Q 025758          182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA  228 (248)
Q Consensus       182 ~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~  228 (248)
                      ..+.|.+++.+++.+++...    |  +++++++.++..++|++|.+
T Consensus       148 ~~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~  188 (188)
T TIGR00678       148 QVLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA  188 (188)
T ss_pred             EEeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence            99999999999999999864    4  67999999999999999864

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.93  E-value=4.2e-25  Score=196.10  Aligned_cols=226  Identities=21%  Similarity=0.285  Sum_probs=150.1

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      +|+|||||.+|++++|++...+.+...+......+++|+||+|||||++|+++..............+...+..+|....
T Consensus        54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~  133 (531)
T TIGR02902        54 PLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTAR  133 (531)
T ss_pred             hHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccccc
Confidence            69999999999999999999999998876666778999999999999999999874322111000000000111110000


Q ss_pred             -c--ccceeeecccceeeeCCC-CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758           82 -I--DLELTTLSSANHVELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (248)
Q Consensus        82 -~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~  157 (248)
                       .  ...-..........+... ..+...          .. ....+.-...+..+++|||++.|++..++.|++++++.
T Consensus       134 ~~~~~~~~~li~~~~~p~~~~~~~~g~~g----------~~-~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~  202 (531)
T TIGR02902       134 FDERGIADPLIGSVHDPIYQGAGPLGIAG----------IP-QPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDR  202 (531)
T ss_pred             CCccccchhhcCCcccchhccccccccCC----------cc-cccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhC
Confidence             0  000000000000000000 000000          00 00000111335679999999999999999999999862


Q ss_pred             c----------------------------CCeeEEEE-ecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCC
Q 025758          158 S----------------------------ASCRLILC-CNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQ  208 (248)
Q Consensus       158 ~----------------------------~~~~~Il~-t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~  208 (248)
                      .                            .+.++|++ ++++..+.++++|||..+.|++++.+++..+++..+.+.++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~  282 (531)
T TIGR02902       203 KVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGIN  282 (531)
T ss_pred             eeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            1                            12345554 456778999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          209 LPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       209 ~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      +++++++.|...+. |.|++.|+++.++..+
T Consensus       283 is~~al~~I~~y~~-n~Rel~nll~~Aa~~A  312 (531)
T TIGR02902       283 LEKHALELIVKYAS-NGREAVNIVQLAAGIA  312 (531)
T ss_pred             cCHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            99999998887654 8999999999987543

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.93  E-value=9e-25  Score=182.76  Aligned_cols=193  Identities=19%  Similarity=0.222  Sum_probs=145.4

Q ss_pred             ccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCccc-ceecccceeeccCCcccccceeeecccce
Q 025758           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGSRNIDLELTTLSSANH   94 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (248)
                      .+...++.|...  .++++| ++|+||+|+||+++|+.+|+.++|...+. ..        .|+.|..|..+....+++.
T Consensus         5 W~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~--------~Cg~C~~C~~~~~~~HPD~   74 (342)
T PRK06964          5 WQTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGE--------PCGTCAACNWFAQGNHPDY   74 (342)
T ss_pred             ccHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCC--------CCCCCHHHHHHHcCCCCCE
Confidence            466777777775  568888 99999999999999999999999976321 11        2555655555666667776


Q ss_pred             eeeCCCCc-------------------C--------cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHH
Q 025758           95 VELSPSDA-------------------G--------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQ  147 (248)
Q Consensus        95 ~~~~~~~~-------------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~  147 (248)
                      ..+.++..                   +        ......+++..+.+. ..+.    .++.+|+|||++|+|+.++.
T Consensus        75 ~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~-~~~~----~~~~kV~iI~~ae~m~~~Aa  149 (342)
T PRK06964         75 RIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCG-VGTH----RGGARVVVLYPAEALNVAAA  149 (342)
T ss_pred             EEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhc-cCCc----cCCceEEEEechhhcCHHHH
Confidence            66655421                   1        112233444443333 2222    56889999999999999999


Q ss_pred             HHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHH
Q 025758          148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR  227 (248)
Q Consensus       148 ~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~  227 (248)
                      |+|+|++|+|+.++.||++|++++.++++++|||+.+.|++|+.+++.++|...    ++  ++  .+.++..++|++..
T Consensus       150 NaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~--~~~~l~~~~Gsp~~  221 (342)
T PRK06964        150 NALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--AD--ADALLAEAGGAPLA  221 (342)
T ss_pred             HHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--Ch--HHHHHHHcCCCHHH
Confidence            999999999999999999999999999999999999999999999999999742    33  22  23346677888887


Q ss_pred             HHHHH
Q 025758          228 AILSF  232 (248)
Q Consensus       228 ~~~~l  232 (248)
                      ++.++
T Consensus       222 Al~~~  226 (342)
T PRK06964        222 ALALA  226 (342)
T ss_pred             HHHHH
Confidence            77665

>PRK04132 replication factor C small subunit; Provisional

Probab=99.93  E-value=3.8e-25  Score=202.05  Aligned_cols=176  Identities=36%  Similarity=0.552  Sum_probs=146.1

Q ss_pred             eEEEC--CCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHH
Q 025758           37 LLFYG--PPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI  114 (248)
Q Consensus        37 ill~G--p~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (248)
                      -+..|  |++.||||+|+++|+.+++.+.+                           ..++++++++..  ....+++.+
T Consensus       567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~---------------------------~~~lElNASd~r--gid~IR~iI  617 (846)
T PRK04132        567 NFIGGNLPTVLHNTTAALALARELFGENWR---------------------------HNFLELNASDER--GINVIREKV  617 (846)
T ss_pred             hhhcCCCCCcccHHHHHHHHHHhhhccccc---------------------------CeEEEEeCCCcc--cHHHHHHHH
Confidence            34567  88889999999999988653211                           113666666531  123577777


Q ss_pred             HHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHH
Q 025758          115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQI  194 (248)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~  194 (248)
                      +.+....+..   ...++|+||||+|+|+..++++|++++|+|+.+++||++||++..++++++|||..+.|++++.+++
T Consensus       618 k~~a~~~~~~---~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i  694 (846)
T PRK04132        618 KEFARTKPIG---GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI  694 (846)
T ss_pred             HHHHhcCCcC---CCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHH
Confidence            7776655441   2357899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcccccC
Q 025758          195 VKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLRFTM  244 (248)
Q Consensus       195 ~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~~  244 (248)
                      ..+|.+++.++++.++++.+..|+..++||+|.++++||.++.....++.
T Consensus       695 ~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~  744 (846)
T PRK04132        695 AKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITD  744 (846)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCH
Confidence            99999999999999999999999999999999999999998765444443

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.92  E-value=3.6e-24  Score=179.22  Aligned_cols=183  Identities=21%  Similarity=0.290  Sum_probs=141.5

Q ss_pred             CCcccccccHHHHHHHHHHhh-----cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           10 KTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~-----~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      ++|++++|++++++.|..++.     ++..++++|+||+|+|||++|+.+|..+...-                      
T Consensus         1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~----------------------   58 (305)
T TIGR00635         1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL----------------------   58 (305)
T ss_pred             CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----------------------
Confidence            589999999999999998886     34456799999999999999999999763210                      


Q ss_pred             ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC-----
Q 025758           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-----  159 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~-----  159 (248)
                                ........  .......+.+.   .        ...+.+++|||++.+++..++.|+..+++...     
T Consensus        59 ----------~~~~~~~~--~~~~~l~~~l~---~--------~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~  115 (305)
T TIGR00635        59 ----------KITSGPAL--EKPGDLAAILT---N--------LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIG  115 (305)
T ss_pred             ----------EEeccchh--cCchhHHHHHH---h--------cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeec
Confidence                      00000000  00011122222   1        12456999999999999888889888875431     


Q ss_pred             -------------CeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccH
Q 025758          160 -------------SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL  225 (248)
Q Consensus       160 -------------~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~  225 (248)
                                   ...+|.+|+++..+.++++||| ..+.|++++.+++.+++.+.+...++.+++++++.|++.++|++
T Consensus       116 ~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p  195 (305)
T TIGR00635       116 KGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP  195 (305)
T ss_pred             cCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence                         1356777888888999999999 67899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 025758          226 RRAILSFETCRV  237 (248)
Q Consensus       226 r~~~~~l~~~~~  237 (248)
                      |.++++++.+..
T Consensus       196 R~~~~ll~~~~~  207 (305)
T TIGR00635       196 RIANRLLRRVRD  207 (305)
T ss_pred             chHHHHHHHHHH
Confidence            999999987653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR00602 rad24 checkpoint protein rad24

Probab=99.92  E-value=2.5e-24  Score=192.24  Aligned_cols=226  Identities=20%  Similarity=0.266  Sum_probs=140.4

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCC----e-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCP----H-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~----~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      +|+|||+|++++|++||++.++.+..|+.....+    . ++|+||+|+||||+++++|+.+.. ..-.+ .+..    .
T Consensus        73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~-~~~Ew-~npv----~  146 (637)
T TIGR00602        73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI-QVQEW-SNPT----L  146 (637)
T ss_pred             chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh-HHHHH-hhhh----h
Confidence            6999999999999999999999999998764432    2 999999999999999999996632 11110 0000    0


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCC-cCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHH
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI-DTKGKRGFKVLVLNEVDKLSREAQHSLRRTME  155 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le  155 (248)
                      +......+. ........+...     ........+.+......... .....+...||||||++.+.......+..+++
T Consensus       147 ~~~~~~~~~-~~~s~~~~~~~~-----~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr  220 (637)
T TIGR00602       147 PDFQKNDHK-VTLSLESCFSNF-----QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILR  220 (637)
T ss_pred             hcccccccc-cchhhhhccccc-----cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHH
Confidence            000000000 000000000000     11122233333322211100 00013467899999997664333233444443


Q ss_pred             -Hh--cCCeeEEEEecCCCc---------------ccHHHhh--hhheeeecCCCHHHHHHHHHHHHHHcCCC-------
Q 025758          156 -KY--SASCRLILCCNSSSK---------------VTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQ-------  208 (248)
Q Consensus       156 -~~--~~~~~~Il~t~~~~~---------------~~~~l~s--R~~~i~~~~~~~~~~~~il~~~~~~~~~~-------  208 (248)
                       .+  ....++|+++++...               +.+++++  |+..|.|+|++..++.+.|..++..++..       
T Consensus       221 ~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~  300 (637)
T TIGR00602       221 WKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKV  300 (637)
T ss_pred             HHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccccccc
Confidence             22  223467777664321               2268887  56789999999999999999999886432       


Q ss_pred             CCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          209 LPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       209 ~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      .+++++..|+..+.||+|.||+.||.++..+
T Consensus       301 p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~  331 (637)
T TIGR00602       301 PKKTSVELLCQGCSGDIRSAINSLQFSSSKS  331 (637)
T ss_pred             CCHHHHHHHHHhCCChHHHHHHHHHHHHhcC
Confidence            2468999999999999999999999998755

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=99.92  E-value=1.4e-23  Score=171.36  Aligned_cols=192  Identities=19%  Similarity=0.257  Sum_probs=146.6

Q ss_pred             ccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      .|+.+++.|...+..++++| ++|+||  +||+++|+.+|..++|.+.+....        |+.|..|.......+++..
T Consensus         6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~--------Cg~C~~C~~i~~~~HPD~~   75 (290)
T PRK07276          6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLP--------CGHCRSCRLIEQGEFSDVT   75 (290)
T ss_pred             HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHhcCCCCCee
Confidence            47889999999999999999 999996  789999999999999987432211        4555554555556677776


Q ss_pred             eeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccH
Q 025758           96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE  175 (248)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~  175 (248)
                      .+.+.+ .......+++..+.+... |.    .+..+|+|||++|.|+.++.|+|+|++|+|+.++.||++|+++..+++
T Consensus        76 ~i~p~~-~~I~idqIR~l~~~~~~~-p~----~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLp  149 (290)
T PRK07276         76 VIEPQG-QVIKTDTIRELVKNFSQS-GY----EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLP  149 (290)
T ss_pred             eecCCC-CcCCHHHHHHHHHHHhhC-cc----cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCch
Confidence            666643 223445566666655543 32    567899999999999999999999999999999999999999999999


Q ss_pred             HHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHH
Q 025758          176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF  232 (248)
Q Consensus       176 ~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l  232 (248)
                      +++|||+.++|++ +.+.+.+++.    ++|+.  ++....++.. .|++..++.++
T Consensus       150 TI~SRcq~i~f~~-~~~~~~~~L~----~~g~~--~~~a~~la~~-~~s~~~A~~l~  198 (290)
T PRK07276        150 TIKSRTQIFHFPK-NEAYLIQLLE----QKGLL--KTQAELLAKL-AQSTSEAEKLA  198 (290)
T ss_pred             HHHHcceeeeCCC-cHHHHHHHHH----HcCCC--hHHHHHHHHH-CCCHHHHHHHh
Confidence            9999999999976 6777777665    45543  4444444444 45788877766

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=99.91  E-value=3.4e-23  Score=168.61  Aligned_cols=171  Identities=16%  Similarity=0.241  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeee
Q 025758           19 QDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL   97 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (248)
                      ...++.|...+..++++| ++|+||.|+||+++|+.+|+.++|.....   .             |..+....+|+...+
T Consensus         3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~-------------c~~~~~~~HPD~~~i   66 (290)
T PRK05917          3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPE---A-------------AYKISQKIHPDIHEF   66 (290)
T ss_pred             cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---H-------------HHHHhcCCCCCEEEE
Confidence            356789999999999999 99999999999999999999999975221   0             112233345555555


Q ss_pred             CCCCcC-cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHH
Q 025758           98 SPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA  176 (248)
Q Consensus        98 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~  176 (248)
                      .|+..+ ......+++..+.+.. .|.    ++.++|+|||++|.|+.+++|+|+|++|+|+.++.||++|+++..++++
T Consensus        67 ~p~~~~~~I~idqiR~l~~~~~~-~p~----e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T  141 (290)
T PRK05917         67 SPQGKGRLHSIETPRAIKKQIWI-HPY----ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT  141 (290)
T ss_pred             ecCCCCCcCcHHHHHHHHHHHhh-Ccc----CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence            554432 2334445555554443 333    5689999999999999999999999999999999999999999999999


Q ss_pred             HhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccH
Q 025758          177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL  225 (248)
Q Consensus       177 l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~  225 (248)
                      ++|||+.++|+++.               ...++++.+..++..++|++
T Consensus       142 I~SRcq~~~~~~~~---------------~~~i~~~~~~~l~~~~~g~~  175 (290)
T PRK05917        142 IRSRSLSIHIPMEE---------------KTLVSKEDIAYLIGYAQGKE  175 (290)
T ss_pred             HHhcceEEEccchh---------------ccCCCHHHHHHHHHHhCCCh
Confidence            99999999998762               11345666666666666665

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.91  E-value=1.4e-22  Score=162.96  Aligned_cols=183  Identities=15%  Similarity=0.298  Sum_probs=137.6

Q ss_pred             CCccccc--ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758           10 KTLDQVI--VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        10 ~~~~~li--g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      .+|++++  ++..+...+.++...+..++++|+||+|+|||+++++++..+.... ..                      
T Consensus        19 ~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~-~~----------------------   75 (235)
T PRK08084         19 ETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRG-RA----------------------   75 (235)
T ss_pred             CCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-Ce----------------------
Confidence            4678887  4778899999988766666799999999999999999998764221 00                      


Q ss_pred             eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCC--eeE
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSAS--CRL  163 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~--~~~  163 (248)
                             +.|.+.+....   ...+.++.+.           ...+++|||++.+.  +..+..|+++++....+  ..+
T Consensus        76 -------v~y~~~~~~~~---~~~~~~~~~~-----------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~l  134 (235)
T PRK08084         76 -------VGYVPLDKRAW---FVPEVLEGME-----------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRL  134 (235)
T ss_pred             -------EEEEEHHHHhh---hhHHHHHHhh-----------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeE
Confidence                   11111000000   0112222221           23589999999874  55677888888775432  367


Q ss_pred             EEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758          164 ILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (248)
Q Consensus       164 Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~  236 (248)
                      |++++.+.    .+.++++||+   .++.+.+|+.+++..++++.+..+++.++++++++|+++++||+|.+++.|+.+.
T Consensus       135 i~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~  214 (235)
T PRK08084        135 LITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD  214 (235)
T ss_pred             EEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            88877664    3679999999   7999999999999999999899899999999999999999999999999999875

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.91  E-value=1.1e-22  Score=166.25  Aligned_cols=193  Identities=23%  Similarity=0.298  Sum_probs=131.7

Q ss_pred             CcccccccHHHHHHHHHHhh---------------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758           11 TLDQVIVHQDIAQNLKKLVT---------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~---------------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~   75 (248)
                      .+++++|.+.+++.+...+.               .+...+++|+|||||||||+|+++|+.+.....  . ..+.    
T Consensus         4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~--~-~~~~----   76 (261)
T TIGR02881         4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV--L-SKGH----   76 (261)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc--c-cCCc----
Confidence            46789999999987764421               223456999999999999999999997632110  0 0000    


Q ss_pred             ccCCcccccceeeecccceeeeCCCCc-Ccc---hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------
Q 025758           76 DAGSRNIDLELTTLSSANHVELSPSDA-GFQ---DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------  143 (248)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------  143 (248)
                                        .+.....+. +..   ......+.++.            ..+.||||||++.|.        
T Consensus        77 ------------------~v~~~~~~l~~~~~g~~~~~~~~~~~~------------a~~~VL~IDE~~~L~~~~~~~~~  126 (261)
T TIGR02881        77 ------------------LIEVERADLVGEYIGHTAQKTREVIKK------------ALGGVLFIDEAYSLARGGEKDFG  126 (261)
T ss_pred             ------------------eEEecHHHhhhhhccchHHHHHHHHHh------------ccCCEEEEechhhhccCCccchH
Confidence                              011111100 000   01112222221            123599999999875        


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l  217 (248)
                      ....+.|++.+++......+|+++...+     .+.++++||+ ..+.|++++.+++.+++++.+...++.++++++..+
T Consensus       127 ~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l  206 (261)
T TIGR02881       127 KEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL  206 (261)
T ss_pred             HHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence            3466788888887765556666644322     3678999999 679999999999999999999999999999999988


Q ss_pred             HHH----------ccccHHHHHHHHHHHhhhcc
Q 025758          218 AEK----------SNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       218 ~~~----------~~g~~r~~~~~l~~~~~~~~  240 (248)
                      .+.          ..||+|.+.|+++.+..+..
T Consensus       207 ~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~  239 (261)
T TIGR02881       207 REHLYKVDQLSSREFSNARYVRNIIEKAIRRQA  239 (261)
T ss_pred             HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence            643          25899999999999775543

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=99.90  E-value=1e-22  Score=162.46  Aligned_cols=178  Identities=16%  Similarity=0.189  Sum_probs=134.2

Q ss_pred             CCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHH
Q 025758           34 CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE  112 (248)
Q Consensus        34 ~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (248)
                      .+| ++|+||.|+||.++|..+|+.+.|.....          .|+.|..|..+....+++...+.+... ......+++
T Consensus         6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~----------~Cg~C~sC~~i~~~~HPDl~~i~p~~~-~I~id~ir~   74 (261)
T PRK05818          6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANG----------FCKTCESCLKILNGKYNDFYLIFDQKN-PIKKEDALS   74 (261)
T ss_pred             CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCC----------CCCCCHHHHHHhcCCCCCEEEecCCcc-cCCHHHHHH
Confidence            466 99999999999999999999999986421          156666555666667777666555432 233444555


Q ss_pred             HHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCC---
Q 025758          113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP---  189 (248)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~---  189 (248)
                      ..+.+.. .+.   ..++++|+|||++|+|+.++.|+|+|++|+|+.++.||++|++++.++++++|||+.+.|+++   
T Consensus        75 l~~~l~~-~s~---e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~  150 (261)
T PRK05818         75 IINKLNR-PSV---ESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKK  150 (261)
T ss_pred             HHHHHcc-Cch---hcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhh
Confidence            5555542 221   134789999999999999999999999999999999999999999999999999999999888   


Q ss_pred             -------CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHH
Q 025758          190 -------TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (248)
Q Consensus       190 -------~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~  235 (248)
                             .+.++...+..   ..  .+++    .++..++|+...++.+++.+
T Consensus       151 ~~~~~~~~~~~i~~~L~~---~~--~~d~----~i~~~a~g~~~~a~~l~~~l  194 (261)
T PRK05818        151 VPFKVESNDRYFQYILLS---FY--SVDE----QLQAYNNGSFSKLKNIIETL  194 (261)
T ss_pred             cccccccChHHHHHHHHH---cc--CccH----HHHHHcCCCHHHHHHHHHHH
Confidence                   44444554442   11  2333    66677789999998888855

>PRK06893 DNA replication initiation factor; Validated

Probab=99.89  E-value=1e-21  Score=157.38  Aligned_cols=185  Identities=18%  Similarity=0.280  Sum_probs=130.5

Q ss_pred             CCCCcccccccHH--HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758            8 RPKTLDQVIVHQD--IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (248)
Q Consensus         8 ~p~~~~~lig~~~--~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (248)
                      .|.+|+++++++.  ....+.+....+..+.++|+||+|+|||++++++|.++........                   
T Consensus        11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~-------------------   71 (229)
T PRK06893         11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAI-------------------   71 (229)
T ss_pred             CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeE-------------------
Confidence            5789999997443  3334444444444556899999999999999999997633221100                   


Q ss_pred             eeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCC-ee
Q 025758           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSAS-CR  162 (248)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~-~~  162 (248)
                              ++.+.  ....    ...+.++.           ..+.++++|||++.+.  ...+..|+++++....+ ..
T Consensus        72 --------y~~~~--~~~~----~~~~~~~~-----------~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~  126 (229)
T PRK06893         72 --------YIPLS--KSQY----FSPAVLEN-----------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKT  126 (229)
T ss_pred             --------EeeHH--Hhhh----hhHHHHhh-----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCc
Confidence                    01110  0000    00111211           1245799999998764  44566789988876443 33


Q ss_pred             E-EEEecCCC----cccHHHhhhhh---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758          163 L-ILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (248)
Q Consensus       163 ~-Il~t~~~~----~~~~~l~sR~~---~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~  234 (248)
                      + |++++...    ...++++||+.   .+.+++|+.+++..++++.+..+++.++++++.+|+++++||+|.+.+.|+.
T Consensus       127 illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~  206 (229)
T PRK06893        127 LLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDL  206 (229)
T ss_pred             EEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence            4 45555543    24589999995   8999999999999999999999999999999999999999999999999998


Q ss_pred             Hh
Q 025758          235 CR  236 (248)
Q Consensus       235 ~~  236 (248)
                      +.
T Consensus       207 l~  208 (229)
T PRK06893        207 LD  208 (229)
T ss_pred             HH
Confidence            75

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=99.89  E-value=8.4e-22  Score=173.19  Aligned_cols=220  Identities=22%  Similarity=0.349  Sum_probs=135.1

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhc---CCC-C-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QDC-P-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~---~~~-~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      +|+|||+|++++||+.+++.++.++.|++.   +.. . .++|+||+||||||+++++|+++...- -+       |.  
T Consensus         8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v-~E-------w~--   77 (519)
T PF03215_consen    8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEV-QE-------WI--   77 (519)
T ss_pred             ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCee-EE-------ec--
Confidence            799999999999999999999999999874   222 2 389999999999999999999873321 11       11  


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHH-HhcCCC-cCC-----CCCCeeEEEEeCCCC-CCHHHHH
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM-AKNRPI-DTK-----GKRGFKVLVLNEVDK-LSREAQH  148 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-----~~~~~~viiiDE~d~-l~~~~~~  148 (248)
                      +|........   ...++.........+..   ..+.+..+ .....+ .+.     .....+||+|||... ...+. .
T Consensus        78 np~~~~~~~~---~~~d~~s~~~~~~~f~s---q~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~-~  150 (519)
T PF03215_consen   78 NPVSFRESDN---QEDDFESDFNKFDEFLS---QSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDT-S  150 (519)
T ss_pred             CCCCcccccc---ccccccccccccccccc---hhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhH-H
Confidence            1111000000   00000000000000000   11112211 111111 111     134789999999854 44443 6


Q ss_pred             HHHHHHHHhc--CC--eeEEEEecC-C-------C--------cccHHHhhh--hheeeecCCCHHHHHHHHHHHHHHc-
Q 025758          149 SLRRTMEKYS--AS--CRLILCCNS-S-------S--------KVTEAIRSR--CLNIRINSPTEEQIVKVLEFIAKKE-  205 (248)
Q Consensus       149 ~ll~~le~~~--~~--~~~Il~t~~-~-------~--------~~~~~l~sR--~~~i~~~~~~~~~~~~il~~~~~~~-  205 (248)
                      .|..+|+++.  ..  ..+|++|.. .       .        -+.+.+...  +..|.|+|.....+.+.|.+++..| 
T Consensus       151 ~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~  230 (519)
T PF03215_consen  151 RFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEA  230 (519)
T ss_pred             HHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHh
Confidence            7777776552  22  334444411 1       0        133455543  4789999999999999999999988 


Q ss_pred             ----CC-CCC--HHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          206 ----GL-QLP--SGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       206 ----~~-~~~--~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                          +. ..+  .++++.|+..+.||+|.||+.||+++..
T Consensus       231 ~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~  270 (519)
T PF03215_consen  231 RSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCLK  270 (519)
T ss_pred             hhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence                22 222  4569999999999999999999999983

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=99.89  E-value=4.4e-22  Score=166.43  Aligned_cols=171  Identities=19%  Similarity=0.299  Sum_probs=133.9

Q ss_pred             cccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758           16 IVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH   94 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (248)
                      ..+...++.+...  .++++| ++|+||+|+|||++|+.+|+.+.|...+.-       ...|+.|..|..+....+++.
T Consensus         4 PW~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~-------~~~Cg~C~~C~~~~~~~HpD~   74 (325)
T PRK08699          4 PWHQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPG-------HKPCGECMSCHLFGQGSHPDF   74 (325)
T ss_pred             CccHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCcCHHHHHHhcCCCCCE
Confidence            3466677777766  468888 999999999999999999999999654211       012666666666777788888


Q ss_pred             eeeCCCCc----C----cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Q 025758           95 VELSPSDA----G----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILC  166 (248)
Q Consensus        95 ~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~  166 (248)
                      ..+.++..    +    ......+++..+.+. ..+.    .+..+|++||++++|++.+++.+++++|+++.++.||++
T Consensus        75 ~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~-~~p~----~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilv  149 (325)
T PRK08699         75 YEITPLSDEPENGRKLLQIKIDAVREIIDNVY-LTSV----RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLV  149 (325)
T ss_pred             EEEecccccccccccCCCcCHHHHHHHHHHHh-hCcc----cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEE
Confidence            88877431    2    123344565444333 3333    457899999999999999999999999999888889999


Q ss_pred             ecCCCcccHHHhhhhheeeecCCCHHHHHHHHHH
Q 025758          167 CNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEF  200 (248)
Q Consensus       167 t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~  200 (248)
                      |+++..++++++|||+.+.|++|+.++...+|..
T Consensus       150 th~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~  183 (325)
T PRK08699        150 SHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE  183 (325)
T ss_pred             eCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence            9999999999999999999999999999999864

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.88  E-value=2.4e-21  Score=165.59  Aligned_cols=221  Identities=20%  Similarity=0.325  Sum_probs=144.2

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhh-----cCCCCe--eEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~-----~~~~~~--ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~   74 (248)
                      +|+|||+|.+.++|..+++-+..++.|++     ..+.++  +||+||+|+||||+++.++.+++.+--        .|.
T Consensus        71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~--------Ew~  142 (634)
T KOG1970|consen   71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI--------EWS  142 (634)
T ss_pred             hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceee--------eec
Confidence            69999999999999999999999999998     566665  899999999999999999997732211        010


Q ss_pred             eccCCcccccceeeecccceeeeCCCCcCcc--hhHHH-HHHHHHHHhcCCC---cCCCCCCeeEEEEeCC-CCCCHHHH
Q 025758           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQ--DRYVV-QEVIKEMAKNRPI---DTKGKRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~---~~~~~~~~~viiiDE~-d~l~~~~~  147 (248)
                        +|....        .+.+..-........  ..... +..+....++...   +......+++|++||+ +....+..
T Consensus       143 --Npi~~~--------~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~  212 (634)
T KOG1970|consen  143 --NPINLK--------EPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDS  212 (634)
T ss_pred             --CCcccc--------ccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhH
Confidence              111100        000111111111111  11111 1111211121111   2223567889999997 54444455


Q ss_pred             HHHHHHHHHhcCC---eeEEEEecCCC--------cccHHHhh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCC----
Q 025758          148 HSLRRTMEKYSAS---CRLILCCNSSS--------KVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLP----  210 (248)
Q Consensus       148 ~~ll~~le~~~~~---~~~Il~t~~~~--------~~~~~l~s--R~~~i~~~~~~~~~~~~il~~~~~~~~~~~~----  210 (248)
                      ..|..+|+.+.+.   ..|+++|+...        .....+.-  |+..|.|+|....-+++.|.+++..++...+    
T Consensus       213 ~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~  292 (634)
T KOG1970|consen  213 ETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKV  292 (634)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence            5566666555332   34666665442        24444443  4478999999999999999999999877666    


Q ss_pred             --HHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758          211 --SGFATRLAEKSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       211 --~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  240 (248)
                        ...++.++..++||+|.||+.||.+...+.
T Consensus       293 ~~~~~v~~i~~~s~GDIRsAInsLQlssskg~  324 (634)
T KOG1970|consen  293 PDTAEVELICQGSGGDIRSAINSLQLSSSKGE  324 (634)
T ss_pred             chhHHHHHHHHhcCccHHHHHhHhhhhcccCc
Confidence              778999999999999999999999964443

>PRK08727 hypothetical protein; Validated

Probab=99.88  E-value=1e-20  Score=151.98  Aligned_cols=183  Identities=21%  Similarity=0.329  Sum_probs=131.0

Q ss_pred             CCcccccccH-HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758           10 KTLDQVIVHQ-DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (248)
Q Consensus        10 ~~~~~lig~~-~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (248)
                      .+|+++++.+ .....+.....+.....++|+||+|+|||+++++++..+......                        
T Consensus        16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~------------------------   71 (233)
T PRK08727         16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRS------------------------   71 (233)
T ss_pred             CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCc------------------------
Confidence            5888987643 344444444332222349999999999999999999876322110                        


Q ss_pred             ecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcC-CeeEEE
Q 025758           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SCRLIL  165 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~-~~~~Il  165 (248)
                            ..|.+.... .  ....+.++.+           .+..+++|||++.+.  +..+..++++++.... ...+|+
T Consensus        72 ------~~y~~~~~~-~--~~~~~~~~~l-----------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~  131 (233)
T PRK08727         72 ------SAYLPLQAA-A--GRLRDALEAL-----------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLY  131 (233)
T ss_pred             ------EEEEeHHHh-h--hhHHHHHHHH-----------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEE
Confidence                  111110000 0  0011222222           245699999998874  4566788898886543 346888


Q ss_pred             EecCCC----cccHHHhhh---hheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758          166 CCNSSS----KVTEAIRSR---CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (248)
Q Consensus       166 ~t~~~~----~~~~~l~sR---~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~  236 (248)
                      +++.+.    .+.++++||   +.++.|++|+.+++..++++++..+++.++++++++|++.++||+|.+++.|+.+.
T Consensus       132 ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~  209 (233)
T PRK08727        132 TARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLD  209 (233)
T ss_pred             ECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            888765    357999999   68999999999999999999999999999999999999999999999999998776

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.87  E-value=1.9e-20  Score=150.20  Aligned_cols=182  Identities=18%  Similarity=0.295  Sum_probs=135.4

Q ss_pred             CCCCcccccc--cHHHHHHHHHHhhcC-CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758            8 RPKTLDQVIV--HQDIAQNLKKLVTEQ-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus         8 ~p~~~~~lig--~~~~~~~l~~~~~~~-~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      +|.+|+++++  ++.+...+..+.... ....++|+||+|||||++|++++..........+                  
T Consensus        13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~------------------   74 (227)
T PRK08903         13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNAR------------------   74 (227)
T ss_pred             ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEE------------------
Confidence            5788999883  677888888887632 3345999999999999999999987643322111                  


Q ss_pred             ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCee--
Q 025758           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCR--  162 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~--  162 (248)
                                 .+....        ..+.+   ..        ....++++|||++.++...+..|+.+++.......  
T Consensus        75 -----------~i~~~~--------~~~~~---~~--------~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~  124 (227)
T PRK08903         75 -----------YLDAAS--------PLLAF---DF--------DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGA  124 (227)
T ss_pred             -----------EEehHH--------hHHHH---hh--------cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcE
Confidence                       111100        00001   10        12456999999999998889999999987654433  


Q ss_pred             EEEEecCCC---cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758          163 LILCCNSSS---KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (248)
Q Consensus       163 ~Il~t~~~~---~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~  236 (248)
                      +|++++...   .+.+.+.||+   ..+.+++|+.++...++.+.+.+.++.++++++.+|++.++||+|++.+.|+.+.
T Consensus       125 vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~  204 (227)
T PRK08903        125 LLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALD  204 (227)
T ss_pred             EEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            444444332   3567888897   6899999999999999999988999999999999999999999999999998876


Q ss_pred             h
Q 025758          237 V  237 (248)
Q Consensus       237 ~  237 (248)
                      .
T Consensus       205 ~  205 (227)
T PRK08903        205 R  205 (227)
T ss_pred             H
Confidence            4

>CHL00181 cbbX CbbX; Provisional

Probab=99.87  E-value=6e-21  Score=157.30  Aligned_cols=190  Identities=18%  Similarity=0.282  Sum_probs=128.8

Q ss_pred             cccccHHHHHHHHHHhh---------------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758           14 QVIVHQDIAQNLKKLVT---------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~---------------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~   78 (248)
                      +++|.+.+++.+..++.               .+...|++|+|||||||||+|+++|+.+.....  .. .+        
T Consensus        24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~--~~-~~--------   92 (287)
T CHL00181         24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY--IK-KG--------   92 (287)
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC--CC-CC--------
Confidence            67899998887765531               122345999999999999999999986532110  00 00        


Q ss_pred             CcccccceeeecccceeeeCCCCc-Ccc---hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC---------CHH
Q 025758           79 SRNIDLELTTLSSANHVELSPSDA-GFQ---DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SRE  145 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~  145 (248)
                                    ..+.+...+. +..   ......+.++.            ..+.|+||||++.+         +.+
T Consensus        93 --------------~~~~v~~~~l~~~~~g~~~~~~~~~l~~------------a~ggVLfIDE~~~l~~~~~~~~~~~e  146 (287)
T CHL00181         93 --------------HLLTVTRDDLVGQYIGHTAPKTKEVLKK------------AMGGVLFIDEAYYLYKPDNERDYGSE  146 (287)
T ss_pred             --------------ceEEecHHHHHHHHhccchHHHHHHHHH------------ccCCEEEEEccchhccCCCccchHHH
Confidence                          0011111100 000   00011122221            13359999999876         456


Q ss_pred             HHHHHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 025758          146 AQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE  219 (248)
Q Consensus       146 ~~~~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~  219 (248)
                      .++.|++.++....+..+|++++...     ...|+++||+ ..+.|++|+.+++..++...+.+.+..++++....+..
T Consensus       147 ~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~  226 (287)
T CHL00181        147 AIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLD  226 (287)
T ss_pred             HHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence            78889999998766666667654321     2358999999 58999999999999999999999999999887776665


Q ss_pred             H--------ccccHHHHHHHHHHHhhhcc
Q 025758          220 K--------SNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       220 ~--------~~g~~r~~~~~l~~~~~~~~  240 (248)
                      .        ..||+|.+.+.++.+.....
T Consensus       227 ~i~~~~~~~~~GNaR~vrn~ve~~~~~~~  255 (287)
T CHL00181        227 YIKKRMEQPLFANARSVRNALDRARMRQA  255 (287)
T ss_pred             HHHHhCCCCCCccHHHHHHHHHHHHHHHH
Confidence            4        24889999999998886554

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=99.87  E-value=2.8e-20  Score=153.36  Aligned_cols=182  Identities=15%  Similarity=0.163  Sum_probs=134.1

Q ss_pred             HHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccc-eeee
Q 025758           20 DIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN-HVEL   97 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   97 (248)
                      .+++.+.+.++.++..| ++|+|+.|.||+++|+.++..++|...+......                    ++. ...+
T Consensus         3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~--------------------~p~n~~~~   62 (299)
T PRK07132          3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE--------------------LPANIILF   62 (299)
T ss_pred             hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC--------------------CCcceEEe
Confidence            46778899999999999 8899999999999999999999886532211000                    111 1222


Q ss_pred             CCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHH
Q 025758           98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI  177 (248)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l  177 (248)
                      .+.+ .......+++.++.+... +.   ..++++|+|||+++.|+..+.|+|+|++|+|+.++.||++|+++..+++++
T Consensus        63 d~~g-~~i~vd~Ir~l~~~~~~~-~~---~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI  137 (299)
T PRK07132         63 DIFD-KDLSKSEFLSAINKLYFS-SF---VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTI  137 (299)
T ss_pred             ccCC-CcCCHHHHHHHHHHhccC-Cc---ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHH
Confidence            2111 112223344444433321 11   135899999999999999999999999999999999999999999999999


Q ss_pred             hhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       178 ~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      +|||+++.|.+++.+++..+|...    +  ++++....++..++ ++..|+.+++
T Consensus       138 ~SRc~~~~f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~  186 (299)
T PRK07132        138 VSRCQVFNVKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYIN  186 (299)
T ss_pred             HhCeEEEECCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHh
Confidence            999999999999999999998732    3  55666666666666 4877776653

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.87  E-value=1.7e-20  Score=169.20  Aligned_cols=216  Identities=21%  Similarity=0.269  Sum_probs=143.6

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-------cccceecccceee
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKTWKI   75 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-------~~~~~~~~~~~~~   75 (248)
                      ..+.|||.+|++++|+..+++.+...+......+++|+|||||||||+|+++.+......       ..-+.+++..+. 
T Consensus       144 ~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-  222 (615)
T TIGR02903       144 AQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-  222 (615)
T ss_pred             HhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-
Confidence            356799999999999999999888887766667799999999999999999998542111       111222221110 


Q ss_pred             ccCCcccccceeeecccceeeeCCCCcCcchhH---HHHHHHHHHHhc-CCCcCCCCCCeeEEEEeCCCCCCHHHHHHHH
Q 025758           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRY---VVQEVIKEMAKN-RPIDTKGKRGFKVLVLNEVDKLSREAQHSLR  151 (248)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll  151 (248)
                                ..    ...+  ...-.+.....   ...+.+...... ....+.......++||||++.|++..+..|+
T Consensus       223 ----------~d----~~~i--~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll  286 (615)
T TIGR02903       223 ----------WD----PREV--TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLL  286 (615)
T ss_pred             ----------CC----HHHH--hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHH
Confidence                      00    0000  00000000000   011111111000 0001111223459999999999999999999


Q ss_pred             HHHHHhc--------------------------CCeeEEEE---ecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHH
Q 025758          152 RTMEKYS--------------------------ASCRLILC---CNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIA  202 (248)
Q Consensus       152 ~~le~~~--------------------------~~~~~Il~---t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~  202 (248)
                      +.+++..                          ....|+++   ++++..+.++++|||..+.|++++.+++..++.+.+
T Consensus       287 ~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a  366 (615)
T TIGR02903       287 KVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAA  366 (615)
T ss_pred             HHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHH
Confidence            9998632                          11224444   345567899999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758          203 KKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (248)
Q Consensus       203 ~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~  236 (248)
                      .+.++.+++++++.|++.+. +.|.+++.|+.+.
T Consensus       367 ~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~  399 (615)
T TIGR02903       367 EKINVHLAAGVEELIARYTI-EGRKAVNILADVY  399 (615)
T ss_pred             HHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence            98888899999988888754 6799999997764

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK06620 hypothetical protein; Validated

Probab=99.86  E-value=4.6e-20  Score=145.98  Aligned_cols=173  Identities=19%  Similarity=0.225  Sum_probs=125.6

Q ss_pred             ccccCCCCCcccccc---cHHHHHHHHHHhhcCC-C---CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758            3 WVDKYRPKTLDQVIV---HQDIAQNLKKLVTEQD-C---PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (248)
Q Consensus         3 ~~~ky~p~~~~~lig---~~~~~~~l~~~~~~~~-~---~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~   75 (248)
                      |-.+|   +|++++.   +..+...++.|...+. .   +.++|+||+|+||||++++++....   .            
T Consensus         9 ~~~~~---tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~------------   70 (214)
T PRK06620          9 TSSKY---HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN---A------------   70 (214)
T ss_pred             CCCCC---CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC---C------------
Confidence            34454   5677754   6678889998876432 2   3499999999999999999887320   0            


Q ss_pred             ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHH
Q 025758           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME  155 (248)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le  155 (248)
                                          .+..... .         ...+.          ....+++|||++.+.   ...|+++++
T Consensus        71 --------------------~~~~~~~-~---------~~~~~----------~~~d~lliDdi~~~~---~~~lf~l~N  107 (214)
T PRK06620         71 --------------------YIIKDIF-F---------NEEIL----------EKYNAFIIEDIENWQ---EPALLHIFN  107 (214)
T ss_pred             --------------------EEcchhh-h---------chhHH----------hcCCEEEEeccccch---HHHHHHHHH
Confidence                                0000000 0         00011          133589999999653   346788887


Q ss_pred             HhcCCee-EEEEecCCC---cccHHHhhhhh---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHH
Q 025758          156 KYSASCR-LILCCNSSS---KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA  228 (248)
Q Consensus       156 ~~~~~~~-~Il~t~~~~---~~~~~l~sR~~---~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~  228 (248)
                      ....++. ++++++.+.   .+ ++++||+.   ++.+.+|+.+.+..++++.+...++.++++++++|+++++||+|.+
T Consensus       108 ~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l  186 (214)
T PRK06620        108 IINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKI  186 (214)
T ss_pred             HHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHH
Confidence            6654444 445544333   24 89999996   9999999999999999999998999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 025758          229 ILSFETCRV  237 (248)
Q Consensus       229 ~~~l~~~~~  237 (248)
                      ++.|+.+..
T Consensus       187 ~~~l~~l~~  195 (214)
T PRK06620        187 IEILENINY  195 (214)
T ss_pred             HHHHHHHHH
Confidence            999998764

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.85  E-value=1e-19  Score=145.82  Aligned_cols=186  Identities=19%  Similarity=0.329  Sum_probs=135.1

Q ss_pred             CCCCcccccc--cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758            8 RPKTLDQVIV--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (248)
Q Consensus         8 ~p~~~~~lig--~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (248)
                      .|.+|++++.  ++.+.+.+++++..+...+++|+||+|||||++|+.++.....+....+                   
T Consensus        10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~-------------------   70 (226)
T TIGR03420        10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAI-------------------   70 (226)
T ss_pred             CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEE-------------------
Confidence            4577888873  7779999999987666667999999999999999999986632221111                   


Q ss_pred             eeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH--HHHHHHHHHHhcC-Cee
Q 025758           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA--QHSLRRTMEKYSA-SCR  162 (248)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~--~~~ll~~le~~~~-~~~  162 (248)
                                .+.......    ...+.+..           .....+++|||++.++...  +..++.+++.... +..
T Consensus        71 ----------~i~~~~~~~----~~~~~~~~-----------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~  125 (226)
T TIGR03420        71 ----------YLPLAELAQ----ADPEVLEG-----------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGR  125 (226)
T ss_pred             ----------EEeHHHHHH----hHHHHHhh-----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCe
Confidence                      111100000    00111111           1134599999999987643  7888888876532 346


Q ss_pred             EEEEecCCC-c--cc-HHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHH
Q 025758          163 LILCCNSSS-K--VT-EAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (248)
Q Consensus       163 ~Il~t~~~~-~--~~-~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~  235 (248)
                      +|++++... .  .. +.+.+|+   ..+.+++++.++...++...+.+.++.++++++..|++.++||+|++.+.++.+
T Consensus       126 iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~  205 (226)
T TIGR03420       126 LLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDAL  205 (226)
T ss_pred             EEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            777766443 2  22 7888897   489999999999999999988888999999999999999999999999998877


Q ss_pred             hh
Q 025758          236 RV  237 (248)
Q Consensus       236 ~~  237 (248)
                      ..
T Consensus       206 ~~  207 (226)
T TIGR03420       206 DR  207 (226)
T ss_pred             HH
Confidence            64

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.85  E-value=5.7e-20  Score=151.59  Aligned_cols=194  Identities=18%  Similarity=0.263  Sum_probs=130.1

Q ss_pred             cccccHHHHHHHHHHhh----------cC-----CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758           14 QVIVHQDIAQNLKKLVT----------EQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~----------~~-----~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~   78 (248)
                      +++|.+.+++.+..++.          .|     ...+++|+||||||||++|+++|..+.....  .. .+ ++.    
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~--~~-~~-~~v----   94 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY--VR-KG-HLV----   94 (284)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC--cc-cc-eEE----
Confidence            57898888888765431          11     1225999999999999999999986632111  00 00 000    


Q ss_pred             CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC---------CHHHHHH
Q 025758           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHS  149 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~~~~~  149 (248)
                               ..+..+.+.   ...+.. .....+.++.            ..+.+++|||++.|         +...++.
T Consensus        95 ---------~v~~~~l~~---~~~g~~-~~~~~~~~~~------------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~  149 (284)
T TIGR02880        95 ---------SVTRDDLVG---QYIGHT-APKTKEILKR------------AMGGVLFIDEAYYLYRPDNERDYGQEAIEI  149 (284)
T ss_pred             ---------EecHHHHhH---hhcccc-hHHHHHHHHH------------ccCcEEEEechhhhccCCCccchHHHHHHH
Confidence                     000000000   000100 0112222221            12359999999977         3456788


Q ss_pred             HHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---
Q 025758          150 LRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK---  220 (248)
Q Consensus       150 ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~---  220 (248)
                      |++.++....+..+|++++...     .+.+++++|+ ..|.|++++.+++..++...+.+.+..++++.+..+.+.   
T Consensus       150 Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~  229 (284)
T TIGR02880       150 LLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIAL  229 (284)
T ss_pred             HHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHH
Confidence            9999987766666666655431     3468999999 689999999999999999999998888999998888765   


Q ss_pred             -----ccccHHHHHHHHHHHhhhcc
Q 025758          221 -----SNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       221 -----~~g~~r~~~~~l~~~~~~~~  240 (248)
                           ..||+|.+.|.++.+.....
T Consensus       230 ~~~~~~~GN~R~lrn~ve~~~~~~~  254 (284)
T TIGR02880       230 RRTQPHFANARSIRNAIDRARLRQA  254 (284)
T ss_pred             hCCCCCCChHHHHHHHHHHHHHHHH
Confidence                 35999999999999886655

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.84  E-value=3.1e-20  Score=145.64  Aligned_cols=184  Identities=24%  Similarity=0.331  Sum_probs=126.2

Q ss_pred             CCCCCcccccccHHHHHH---HHHHhh------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758            7 YRPKTLDQVIVHQDIAQN---LKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (248)
Q Consensus         7 y~p~~~~~lig~~~~~~~---l~~~~~------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~   77 (248)
                      ....+|+|++||+++++.   +.++++      .|-+.++||+||||||||.+|+++|.+...+-               
T Consensus       115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~---------------  179 (368)
T COG1223         115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL---------------  179 (368)
T ss_pred             hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce---------------
Confidence            456789999999998864   445554      34456799999999999999999998652111               


Q ss_pred             CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------------HH
Q 025758           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------RE  145 (248)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------------~~  145 (248)
                               -.+.....++-        ......+.+..+.....     +..|.|++|||.|.+.            .+
T Consensus       180 ---------l~vkat~liGe--------hVGdgar~Ihely~rA~-----~~aPcivFiDE~DAiaLdRryQelRGDVsE  237 (368)
T COG1223         180 ---------LLVKATELIGE--------HVGDGARRIHELYERAR-----KAAPCIVFIDELDAIALDRRYQELRGDVSE  237 (368)
T ss_pred             ---------EEechHHHHHH--------HhhhHHHHHHHHHHHHH-----hcCCeEEEehhhhhhhhhhhHHHhcccHHH
Confidence                     00111111110        01112222332222111     3467899999998763            23


Q ss_pred             HHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Q 025758          146 AQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN  222 (248)
Q Consensus       146 ~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~  222 (248)
                      ..|+|+.-++....+  +.+|..||++.-+.++++||+ ..|.|..|+.++...++...+++-.+.++.. +.+++..+.
T Consensus       238 iVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~  316 (368)
T COG1223         238 IVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTK  316 (368)
T ss_pred             HHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhC
Confidence            467888888766443  568888999999999999999 6899999999999999999998887777655 777776664


Q ss_pred             c-cHHHH
Q 025758          223 R-SLRRA  228 (248)
Q Consensus       223 g-~~r~~  228 (248)
                      | +.|++
T Consensus       317 g~SgRdi  323 (368)
T COG1223         317 GMSGRDI  323 (368)
T ss_pred             CCCchhH
Confidence            4 34444

>PRK05642 DNA replication initiation factor; Validated

Probab=99.84  E-value=2e-19  Score=144.57  Aligned_cols=184  Identities=17%  Similarity=0.274  Sum_probs=130.0

Q ss_pred             CCccccc-c-cHHHHHHHHHHhhc---CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           10 KTLDQVI-V-HQDIAQNLKKLVTE---QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        10 ~~~~~li-g-~~~~~~~l~~~~~~---~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      -||++++ | +..+.+.+.++...   +..+.++|+||+|+|||+|+++++.++.......                   
T Consensus        16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v-------------------   76 (234)
T PRK05642         16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPA-------------------   76 (234)
T ss_pred             ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcE-------------------
Confidence            4788887 3 44455666666542   2234589999999999999999998663221110                   


Q ss_pred             ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCC-e
Q 025758           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSAS-C  161 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~-~  161 (248)
                                +.+...+.. ..   ....++.+.           +.++++||+++.+.  +..+..|+++++....+ .
T Consensus        77 ----------~y~~~~~~~-~~---~~~~~~~~~-----------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~  131 (234)
T PRK05642         77 ----------VYLPLAELL-DR---GPELLDNLE-----------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGR  131 (234)
T ss_pred             ----------EEeeHHHHH-hh---hHHHHHhhh-----------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCC
Confidence                      011110000 00   111122221           34589999998764  45577899999876543 4


Q ss_pred             eEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758          162 RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (248)
Q Consensus       162 ~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~  234 (248)
                      .+|++++.+.    ...++++||+   .++.+.+|+.+++..+++..+...++.++++++++|++.++||+|.+.+.|+.
T Consensus       132 ~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~  211 (234)
T PRK05642        132 RLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLER  211 (234)
T ss_pred             EEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            5666666543    3478999999   78999999999999999988888899999999999999999999999999988


Q ss_pred             Hhh
Q 025758          235 CRV  237 (248)
Q Consensus       235 ~~~  237 (248)
                      +..
T Consensus       212 l~~  214 (234)
T PRK05642        212 LDQ  214 (234)
T ss_pred             HHH
Confidence            864

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.83  E-value=1.8e-19  Score=143.23  Aligned_cols=196  Identities=21%  Similarity=0.315  Sum_probs=128.2

Q ss_pred             CCccccc-c--cHHHHHHHHHHhhcCCC--CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           10 KTLDQVI-V--HQDIAQNLKKLVTEQDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        10 ~~~~~li-g--~~~~~~~l~~~~~~~~~--~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      -||++++ |  ++.+.+...........  ..++|+||+|+|||+|+++++.++.....+..                  
T Consensus         5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~------------------   66 (219)
T PF00308_consen    5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKR------------------   66 (219)
T ss_dssp             -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-------------------
T ss_pred             CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcccccc------------------
Confidence            5788886 4  66677777766654332  34899999999999999999997743221110                  


Q ss_pred             ceeeecccceeeeCC-CCcCcchhHHHHHHHHHHHhcCCCcCC-CCCCeeEEEEeCCCCCCHH--HHHHHHHHHHHhcCC
Q 025758           85 ELTTLSSANHVELSP-SDAGFQDRYVVQEVIKEMAKNRPIDTK-GKRGFKVLVLNEVDKLSRE--AQHSLRRTMEKYSAS  160 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~viiiDE~d~l~~~--~~~~ll~~le~~~~~  160 (248)
                                +.|.. ...       ..+....+.......+. .-...++++||+++.+...  .+..|+++++.....
T Consensus        67 ----------v~y~~~~~f-------~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~  129 (219)
T PF00308_consen   67 ----------VVYLSAEEF-------IREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES  129 (219)
T ss_dssp             ----------EEEEEHHHH-------HHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT
T ss_pred             ----------ceeecHHHH-------HHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh
Confidence                      11111 000       01111111100000000 0125679999999888643  488999999987443


Q ss_pred             -eeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHH
Q 025758          161 -CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF  232 (248)
Q Consensus       161 -~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l  232 (248)
                       ..+|++++.++    .+.+.++||+   .++.+.+|+.+....++++.+...++.++++++++|++...+|+|.+...|
T Consensus       130 ~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l  209 (219)
T PF00308_consen  130 GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL  209 (219)
T ss_dssp             TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred             CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence             56788876553    4778999998   589999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcc
Q 025758          233 ETCRVQQL  240 (248)
Q Consensus       233 ~~~~~~~~  240 (248)
                      +.+...++
T Consensus       210 ~~l~~~~~  217 (219)
T PF00308_consen  210 NRLDAYAQ  217 (219)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            88876543

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK09087 hypothetical protein; Validated

Probab=99.83  E-value=4.6e-19  Score=141.44  Aligned_cols=172  Identities=16%  Similarity=0.201  Sum_probs=127.2

Q ss_pred             CCcccccc---cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce
Q 025758           10 KTLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (248)
Q Consensus        10 ~~~~~lig---~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (248)
                      -+|++++.   +..+...+.++. .+..+.++|+||+|+|||||+++++...   ..                       
T Consensus        18 ~~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~---~~-----------------------   70 (226)
T PRK09087         18 YGRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS---DA-----------------------   70 (226)
T ss_pred             CChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc---CC-----------------------
Confidence            37899985   666888777765 3444559999999999999999999742   10                       


Q ss_pred             eeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC-eeEEE
Q 025758           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS-CRLIL  165 (248)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~-~~~Il  165 (248)
                              ..+.....       ..+.+..+.            ..+++|||++.+. ..+..|+++++..... ..+|+
T Consensus        71 --------~~i~~~~~-------~~~~~~~~~------------~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ili  122 (226)
T PRK09087         71 --------LLIHPNEI-------GSDAANAAA------------EGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLM  122 (226)
T ss_pred             --------EEecHHHc-------chHHHHhhh------------cCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEE
Confidence                    00111000       011111111            1389999998774 3467799999876553 45666


Q ss_pred             EecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758          166 CCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (248)
Q Consensus       166 ~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~  236 (248)
                      +++.+.    ...++++||+   .++.+.+|+.+.+..++++.+..+++.++++++++|++++.|++|.++..|+.+.
T Consensus       123 ts~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~  200 (226)
T PRK09087        123 TSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLD  200 (226)
T ss_pred             ECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            666543    3578999999   8999999999999999999999999999999999999999999999998776665

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.82  E-value=4.4e-19  Score=159.96  Aligned_cols=216  Identities=12%  Similarity=0.151  Sum_probs=137.2

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHh----hcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCC-------cccceecccc
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLV----TEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKT   72 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~----~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~-------~~~~~~~~~~   72 (248)
                      .-|.|   +.|.+.+.-.+.|...+    ......+ ++++|+||||||++++.+.+.+....       ...+.++|..
T Consensus       750 ~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~  826 (1164)
T PTZ00112        750 LDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN  826 (1164)
T ss_pred             cccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence            45778   66778777666555544    3333334 57999999999999999998774221       1112232221


Q ss_pred             eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHH
Q 025758           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR  152 (248)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~  152 (248)
                      +.  .+      ..........+.-.....+......+...+.....       ......||+|||+|.|....+..|+.
T Consensus       827 Ls--tp------~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k-------~~r~v~IIILDEID~L~kK~QDVLYn  891 (1164)
T PTZ00112        827 VV--HP------NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK-------DNRNVSILIIDEIDYLITKTQKVLFT  891 (1164)
T ss_pred             cC--CH------HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc-------ccccceEEEeehHhhhCccHHHHHHH
Confidence            11  00      00000000111001111122222222222322211       12345699999999998767788888


Q ss_pred             HHHHhcC---CeeEEEEecCC---CcccHHHhhhhh--eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---Hc
Q 025758          153 TMEKYSA---SCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE---KS  221 (248)
Q Consensus       153 ~le~~~~---~~~~Il~t~~~---~~~~~~l~sR~~--~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~---~~  221 (248)
                      +++.+..   ...+|.++|..   ..+.+.++||+.  .+.|+||+.+++.+||..++....-.+++++++++++   ..
T Consensus       892 LFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~  971 (1164)
T PTZ00112        892 LFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV  971 (1164)
T ss_pred             HHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc
Confidence            8876532   24577778764   357789999984  5999999999999999999987555689999999998   66


Q ss_pred             cccHHHHHHHHHHHhhh
Q 025758          222 NRSLRRAILSFETCRVQ  238 (248)
Q Consensus       222 ~g~~r~~~~~l~~~~~~  238 (248)
                      .||+|.|+++|..+...
T Consensus       972 SGDARKALDILRrAgEi  988 (1164)
T PTZ00112        972 SGDIRKALQICRKAFEN  988 (1164)
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            79999999999998864

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.82  E-value=1.1e-18  Score=149.55  Aligned_cols=225  Identities=18%  Similarity=0.242  Sum_probs=133.1

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhh----cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~----~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~   78 (248)
                      +-..|.|   ++++|.+..++.|..++.    ++..++++++||+|+|||++++.++..+.....+. ......+..+|.
T Consensus         8 l~~~~~p---~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~-~~~~~~v~in~~   83 (365)
T TIGR02928         8 LEPDYVP---DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDR-DVRVVTVYVNCQ   83 (365)
T ss_pred             CCCCCCC---CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhcc-CCceEEEEEECC
Confidence            4568999   578998888877777664    33445699999999999999999998774321110 000000111111


Q ss_pred             Ccccccceeeeccccee---eeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHH
Q 025758           79 SRNIDLELTTLSSANHV---ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME  155 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le  155 (248)
                      .......+ .......+   +...+..+...........+.+..        .+.+.|++|||+|.+.......+..+++
T Consensus        84 ~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlvIDE~d~L~~~~~~~L~~l~~  154 (365)
T TIGR02928        84 ILDTLYQV-LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNE--------RGDSLIIVLDEIDYLVGDDDDLLYQLSR  154 (365)
T ss_pred             CCCCHHHH-HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEECchhhhccCCcHHHHhHhc
Confidence            11100000 00000001   111111111111222222332221        2356799999999884222233333332


Q ss_pred             H-----hc-CCeeEEEEecCCC---cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH---
Q 025758          156 K-----YS-ASCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAE---  219 (248)
Q Consensus       156 ~-----~~-~~~~~Il~t~~~~---~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~--~~~~~~~~~~~~l~~---  219 (248)
                      -     .+ ....+|+++|++.   .+.+.+.+|+  ..+.|++++.+++.+++..++..  .+-.++++++++++.   
T Consensus       155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~  234 (365)
T TIGR02928       155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA  234 (365)
T ss_pred             cccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence            2     22 3457888998875   4777888888  57999999999999999999863  233477888777654   


Q ss_pred             HccccHHHHHHHHHHHhhhcc
Q 025758          220 KSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       220 ~~~g~~r~~~~~l~~~~~~~~  240 (248)
                      .+.|++|.++++++.+...+.
T Consensus       235 ~~~Gd~R~al~~l~~a~~~a~  255 (365)
T TIGR02928       235 QEHGDARKAIDLLRVAGEIAE  255 (365)
T ss_pred             HhcCCHHHHHHHHHHHHHHHH
Confidence            446999999999988775443

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.1e-18  Score=142.61  Aligned_cols=195  Identities=19%  Similarity=0.284  Sum_probs=137.0

Q ss_pred             cccCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      +++-.-.|.+|+=|.++.++.++..++-             ..+.++|||||||||||-+|+++|.+.   ++.-+++.|
T Consensus       142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvg  218 (406)
T COG1222         142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATFIRVVG  218 (406)
T ss_pred             eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceEEEecc
Confidence            4455567889988999999999988741             123349999999999999999999854   333333333


Q ss_pred             cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC--------
Q 025758           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--------  142 (248)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l--------  142 (248)
                      ..+.                    -.|..+     +...++++|....         +..|.||||||+|.+        
T Consensus       219 SElV--------------------qKYiGE-----GaRlVRelF~lAr---------ekaPsIIFiDEIDAIg~kR~d~~  264 (406)
T COG1222         219 SELV--------------------QKYIGE-----GARLVRELFELAR---------EKAPSIIFIDEIDAIGAKRFDSG  264 (406)
T ss_pred             HHHH--------------------HHHhcc-----chHHHHHHHHHHh---------hcCCeEEEEechhhhhcccccCC
Confidence            2211                    011111     1223666666444         346779999999987        


Q ss_pred             ---CHHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          143 ---SREAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       143 ---~~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                         +.+.|..++++|.+.     ..++++|+.||.++-+.|+|..-.   +.|.|+.|+.+...+|++-+..+=  ++.+
T Consensus       265 t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM--~l~~  342 (406)
T COG1222         265 TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM--NLAD  342 (406)
T ss_pred             CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc--cCcc
Confidence               356788899998764     567899999999999999998754   689999999999999998766543  3334


Q ss_pred             HH-HHHHHHHccc-cHHHHHHHHHHHhh
Q 025758          212 GF-ATRLAEKSNR-SLRRAILSFETCRV  237 (248)
Q Consensus       212 ~~-~~~l~~~~~g-~~r~~~~~l~~~~~  237 (248)
                      ++ ++.|++.++| +..++-..+..+..
T Consensus       343 dvd~e~la~~~~g~sGAdlkaictEAGm  370 (406)
T COG1222         343 DVDLELLARLTEGFSGADLKAICTEAGM  370 (406)
T ss_pred             CcCHHHHHHhcCCCchHHHHHHHHHHhH
Confidence            33 7777777655 45555555555543

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.81  E-value=1.1e-18  Score=151.72  Aligned_cols=191  Identities=14%  Similarity=0.204  Sum_probs=133.1

Q ss_pred             CCccccc-c--cHHHHHHHHHHhhc-----CC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758           10 KTLDQVI-V--HQDIAQNLKKLVTE-----QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus        10 ~~~~~li-g--~~~~~~~l~~~~~~-----~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .||++++ |  +..+...+..+...     +. ...++|+||+|+|||+|+++++..+.......               
T Consensus       108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v---------------  172 (445)
T PRK12422        108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKI---------------  172 (445)
T ss_pred             ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCE---------------
Confidence            4788887 4  44455666666542     12 23499999999999999999999874432111               


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHH-HHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHh
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQ-EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKY  157 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~  157 (248)
                                    +.+..+.....-..... .....+...       ....++++|||++.+.  ...+..|+++++..
T Consensus       173 --------------~yi~~~~f~~~~~~~l~~~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l  231 (445)
T PRK12422        173 --------------LYVRSELFTEHLVSAIRSGEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSL  231 (445)
T ss_pred             --------------EEeeHHHHHHHHHHHHhcchHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHH
Confidence                          11111000000000000 001111111       1256799999998875  35678899998765


Q ss_pred             c-CCeeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHH
Q 025758          158 S-ASCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI  229 (248)
Q Consensus       158 ~-~~~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~  229 (248)
                      . .+..+|++++.+.    .+.+.++||+   ..+.+.+|+.+++..+|++.+...++.++++++++|+....+|+|.+.
T Consensus       232 ~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~  311 (445)
T PRK12422        232 HTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLL  311 (445)
T ss_pred             HHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence            3 3456777777653    4678999999   699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 025758          230 LSFETCR  236 (248)
Q Consensus       230 ~~l~~~~  236 (248)
                      +.|+.++
T Consensus       312 g~l~~l~  318 (445)
T PRK12422        312 HALTLLA  318 (445)
T ss_pred             HHHHHHH
Confidence            9999885

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=4.4e-19  Score=156.18  Aligned_cols=195  Identities=15%  Similarity=0.201  Sum_probs=132.4

Q ss_pred             cccccHHHHHHHHHHhh------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758           14 QVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      |.+|.+++++.+..++.      .-+.|-+||+||||+|||++++.||+.+ ....-.+.++|..-.-....+++     
T Consensus       324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al-~RkfvR~sLGGvrDEAEIRGHRR-----  397 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL-GRKFVRISLGGVRDEAEIRGHRR-----  397 (782)
T ss_pred             cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh-CCCEEEEecCccccHHHhccccc-----
Confidence            45789999998887763      2223559999999999999999999976 44444445555432212222222     


Q ss_pred             eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH----HHHHHHHHHHh------
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKY------  157 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~----~~~ll~~le~~------  157 (248)
                              .|..+-+|.     +.+.++...          ..++|++|||+|.|+.+.    ..+||++++--      
T Consensus       398 --------TYIGamPGr-----IiQ~mkka~----------~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~  454 (782)
T COG0466         398 --------TYIGAMPGK-----IIQGMKKAG----------VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFS  454 (782)
T ss_pred             --------cccccCChH-----HHHHHHHhC----------CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchh
Confidence                    122222221     222233222          245699999999996432    35777777511      


Q ss_pred             ---------cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHH
Q 025758          158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-----K-----EGLQLPSGFATRLA  218 (248)
Q Consensus       158 ---------~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~-----~-----~~~~~~~~~~~~l~  218 (248)
                               -+++.||+|+|..+.++.+|++|+.+|.+..|+.++-..|.++++-     .     ..+.++++++..|+
T Consensus       455 DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI  534 (782)
T COG0466         455 DHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII  534 (782)
T ss_pred             hccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence                     1335599999999999999999999999999999999999988633     2     25568899999999


Q ss_pred             HHcccc--HHHHHHHHHHHhh
Q 025758          219 EKSNRS--LRRAILSFETCRV  237 (248)
Q Consensus       219 ~~~~g~--~r~~~~~l~~~~~  237 (248)
                      +...+.  .|.+-..+..+|.
T Consensus       535 ~~YTREAGVR~LeR~i~ki~R  555 (782)
T COG0466         535 RYYTREAGVRNLEREIAKICR  555 (782)
T ss_pred             HHHhHhhhhhHHHHHHHHHHH
Confidence            877432  6666666665553

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.80  E-value=1.8e-18  Score=149.37  Aligned_cols=202  Identities=17%  Similarity=0.245  Sum_probs=130.0

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccce
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK   67 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~   67 (248)
                      +++++++.+.+|+|+.|.+..++.+..++.-             ....+++|+||||||||++|+++|+.+..+   .+.
T Consensus       171 ~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~---fi~  247 (438)
T PTZ00361        171 VMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT---FLR  247 (438)
T ss_pred             hcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC---EEE
Confidence            4678999999999999999999888877631             122349999999999999999999965221   111


Q ss_pred             ecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC----
Q 025758           68 VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----  143 (248)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----  143 (248)
                      +.+..+                        .....+ .....+.+.+....         ...+.|++|||+|.+.    
T Consensus       248 V~~seL------------------------~~k~~G-e~~~~vr~lF~~A~---------~~~P~ILfIDEID~l~~kR~  293 (438)
T PTZ00361        248 VVGSEL------------------------IQKYLG-DGPKLVRELFRVAE---------ENAPSIVFIDEIDAIGTKRY  293 (438)
T ss_pred             Eecchh------------------------hhhhcc-hHHHHHHHHHHHHH---------hCCCcEEeHHHHHHHhccCC
Confidence            111000                        000000 01112344444332         2356799999998652    


Q ss_pred             -------HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCC
Q 025758          144 -------REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQ  208 (248)
Q Consensus       144 -------~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~  208 (248)
                             ...+..++.++...     ..+..+|++||++..+.+++.+  |+ ..|.|++|+.+++..|+...+.+..+.
T Consensus       294 ~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~  373 (438)
T PTZ00361        294 DATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA  373 (438)
T ss_pred             CCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC
Confidence                   22344455555432     3356799999999999999874  66 689999999999999999887665543


Q ss_pred             CCHHHHHHHHHHcc-ccHHHHHHHHHHHhhhcc
Q 025758          209 LPSGFATRLAEKSN-RSLRRAILSFETCRVQQL  240 (248)
Q Consensus       209 ~~~~~~~~l~~~~~-g~~r~~~~~l~~~~~~~~  240 (248)
                      -+ -.+..++..+. -+..++.++++.++..+.
T Consensus       374 ~d-vdl~~la~~t~g~sgAdI~~i~~eA~~~Al  405 (438)
T PTZ00361        374 ED-VDLEEFIMAKDELSGADIKAICTEAGLLAL  405 (438)
T ss_pred             cC-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            22 23555655543 345555556666654443

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.79  E-value=4.4e-18  Score=158.42  Aligned_cols=200  Identities=15%  Similarity=0.282  Sum_probs=138.4

Q ss_pred             ccccccHHHHHHHHHHhhc--------CCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758           13 DQVIVHQDIAQNLKKLVTE--------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~--------~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      +.++||+.+++.+..++..        +++.. ++|.||+|||||.+|+++|..++.....-+.+++..|.....     
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~-----  640 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHT-----  640 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhh-----
Confidence            4568999999988887631        22223 899999999999999999998865444444454433321110     


Q ss_pred             cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----  158 (248)
                             ....++-.+...|......+.+.++            .+.+.|++|||++.+++...+.|+.++++..     
T Consensus       641 -------~~~l~g~~~gyvg~~~~g~L~~~v~------------~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~  701 (852)
T TIGR03345       641 -------VSRLKGSPPGYVGYGEGGVLTEAVR------------RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGE  701 (852)
T ss_pred             -------hccccCCCCCcccccccchHHHHHH------------hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCC
Confidence                   0111221121122211112222222            2255799999999999999999999998764     


Q ss_pred             ------CCeeEEEEecCCC-----------------------------cccHHHhhhhheeeecCCCHHHHHHHHHHHHH
Q 025758          159 ------ASCRLILCCNSSS-----------------------------KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK  203 (248)
Q Consensus       159 ------~~~~~Il~t~~~~-----------------------------~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~  203 (248)
                            .++.||+|||-..                             .+.|.+.+|+.++.|.+++.+++.+++...+.
T Consensus       702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~  781 (852)
T TIGR03345       702 GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLD  781 (852)
T ss_pred             CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHH
Confidence                  5677888887421                             25678889999999999999999999988765


Q ss_pred             H-------c-C--CCCCHHHHHHHHHHccc---cHHHHHHHHHHHh
Q 025758          204 K-------E-G--LQLPSGFATRLAEKSNR---SLRRAILSFETCR  236 (248)
Q Consensus       204 ~-------~-~--~~~~~~~~~~l~~~~~g---~~r~~~~~l~~~~  236 (248)
                      +       . +  +.++++++++|++.+.+   .+|.+.+.++...
T Consensus       782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i  827 (852)
T TIGR03345       782 RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL  827 (852)
T ss_pred             HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence            3       1 4  36889999999999876   6888888887644

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.79  E-value=1.7e-17  Score=143.70  Aligned_cols=215  Identities=16%  Similarity=0.233  Sum_probs=130.2

Q ss_pred             cCCCCCcccccccHHHHHHHHHHh----hcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC--cccceecccceeeccCC
Q 025758            6 KYRPKTLDQVIVHQDIAQNLKKLV----TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGS   79 (248)
Q Consensus         6 ky~p~~~~~lig~~~~~~~l~~~~----~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~--~~~~~~~~~~~~~~~~~   79 (248)
                      .|.|   +.++|.+...+.|...+    .++..++++++||+|+|||++++.+++.+....  ...+.+++.       .
T Consensus        26 ~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~-------~   95 (394)
T PRK00411         26 DYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ-------I   95 (394)
T ss_pred             CCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC-------c
Confidence            4555   55778777666666554    334455699999999999999999998774332  112222221       1


Q ss_pred             cccccceeeecccceeee-CCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC----HHHHHHHHHHH
Q 025758           80 RNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLRRTM  154 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----~~~~~~ll~~l  154 (248)
                      ......+ .......+.- .....+..    ..+.+..+.....    ..+.+.||+|||+|.+.    .+....|++.+
T Consensus        96 ~~~~~~~-~~~i~~~l~~~~~~~~~~~----~~~~~~~~~~~l~----~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~  166 (394)
T PRK00411         96 DRTRYAI-FSEIARQLFGHPPPSSGLS----FDELFDKIAEYLD----ERDRVLIVALDDINYLFEKEGNDVLYSLLRAH  166 (394)
T ss_pred             CCCHHHH-HHHHHHHhcCCCCCCCCCC----HHHHHHHHHHHHH----hcCCEEEEEECCHhHhhccCCchHHHHHHHhh
Confidence            1000000 0000000100 11111111    1222222221110    12356799999999875    23344555555


Q ss_pred             HHhcC-CeeEEEEecCCC---cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---cc
Q 025758          155 EKYSA-SCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS---NR  223 (248)
Q Consensus       155 e~~~~-~~~~Il~t~~~~---~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~~--~~~~~~~~~~~l~~~~---~g  223 (248)
                      +.... ...+|+++++..   .+.+.+.+|+  ..+.|++++.+++.++++.++...  .-.+++++++.+++.+   .|
T Consensus       167 ~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G  246 (394)
T PRK00411        167 EEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG  246 (394)
T ss_pred             hccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence            54333 356888888764   4567778887  579999999999999999988653  2257899999998777   78


Q ss_pred             cHHHHHHHHHHHhhhc
Q 025758          224 SLRRAILSFETCRVQQ  239 (248)
Q Consensus       224 ~~r~~~~~l~~~~~~~  239 (248)
                      ++|.+++++..+...+
T Consensus       247 d~r~a~~ll~~a~~~a  262 (394)
T PRK00411        247 DARVAIDLLRRAGLIA  262 (394)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            9999999998766444

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.79  E-value=7e-18  Score=147.05  Aligned_cols=188  Identities=19%  Similarity=0.296  Sum_probs=129.7

Q ss_pred             CCccccc-c--cHHHHHHHHHHhhc-CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758           10 KTLDQVI-V--HQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (248)
Q Consensus        10 ~~~~~li-g--~~~~~~~l~~~~~~-~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (248)
                      .||++++ |  +..+......+..+ +....++|+||+|+|||+|+++++..+.....+. .+                 
T Consensus       102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~-~v-----------------  163 (440)
T PRK14088        102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-RV-----------------  163 (440)
T ss_pred             CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCC-eE-----------------
Confidence            4788887 4  44455666666553 3334499999999999999999999774322110 00                 


Q ss_pred             eeeecccceeeeCCCCcCcchhHHHHHH--------HHHHHhcCCCcCCCCCCeeEEEEeCCCCC-C-HHHHHHHHHHHH
Q 025758           86 LTTLSSANHVELSPSDAGFQDRYVVQEV--------IKEMAKNRPIDTKGKRGFKVLVLNEVDKL-S-REAQHSLRRTME  155 (248)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~viiiDE~d~l-~-~~~~~~ll~~le  155 (248)
                               +.+..++.       ..+.        +..+....      ...+++++|||++.+ + ...+..|+++++
T Consensus       164 ---------~yi~~~~f-------~~~~~~~~~~~~~~~f~~~~------~~~~dvLlIDDi~~l~~~~~~q~elf~~~n  221 (440)
T PRK14088        164 ---------MYITSEKF-------LNDLVDSMKEGKLNEFREKY------RKKVDVLLIDDVQFLIGKTGVQTELFHTFN  221 (440)
T ss_pred             ---------EEEEHHHH-------HHHHHHHHhcccHHHHHHHH------HhcCCEEEEechhhhcCcHHHHHHHHHHHH
Confidence                     01111000       0011        11111110      124679999999865 3 335678889988


Q ss_pred             HhcCC-eeEEEEecCCC----cccHHHhhhhh---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHH
Q 025758          156 KYSAS-CRLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR  227 (248)
Q Consensus       156 ~~~~~-~~~Il~t~~~~----~~~~~l~sR~~---~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~  227 (248)
                      ..... ..+|+++++..    .+.+.+.||+.   ++.+.+|+.+.+..++++.+..+++.++++++++|++.+.||+|.
T Consensus       222 ~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~  301 (440)
T PRK14088        222 ELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRR  301 (440)
T ss_pred             HHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHH
Confidence            76443 45666665443    36678899985   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 025758          228 AILSFETCRV  237 (248)
Q Consensus       228 ~~~~l~~~~~  237 (248)
                      +...|..+..
T Consensus       302 L~g~l~~l~~  311 (440)
T PRK14088        302 LRGAIIKLLV  311 (440)
T ss_pred             HHHHHHHHHH
Confidence            9888877753

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.79  E-value=3.2e-18  Score=151.88  Aligned_cols=196  Identities=19%  Similarity=0.281  Sum_probs=127.8

Q ss_pred             cccCCCCCcccccccHHHHHHHHHHhh-----------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758            4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~   71 (248)
                      .+.....+|+|++|++.+++.+..++.           ..+.+ +++|+||||||||++|+++|+....+-   +.+++.
T Consensus        46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~---~~i~~~  122 (495)
T TIGR01241        46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF---FSISGS  122 (495)
T ss_pred             cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe---eeccHH
Confidence            445567899999999998887776553           12333 499999999999999999998652211   111110


Q ss_pred             ceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-------
Q 025758           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------  144 (248)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------  144 (248)
                      .+                     ...   ..+ .....+.+.+.....         ..|.||+|||+|.+..       
T Consensus       123 ~~---------------------~~~---~~g-~~~~~l~~~f~~a~~---------~~p~Il~iDEid~l~~~r~~~~~  168 (495)
T TIGR01241       123 DF---------------------VEM---FVG-VGASRVRDLFEQAKK---------NAPCIIFIDEIDAVGRQRGAGLG  168 (495)
T ss_pred             HH---------------------HHH---Hhc-ccHHHHHHHHHHHHh---------cCCCEEEEechhhhhhccccCcC
Confidence            00                     000   000 011224444444332         2567999999987642       


Q ss_pred             -------HHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 025758          145 -------EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (248)
Q Consensus       145 -------~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~  212 (248)
                             ...+.|+..++....  +..+|.+||++..+.+++.+  |+ ..+.++.|+.++..+++...+.+.++. ++.
T Consensus       169 ~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~  247 (495)
T TIGR01241       169 GGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDV  247 (495)
T ss_pred             CccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cch
Confidence                   123445555554432  35678889999999999987  55 689999999999999999888765543 344


Q ss_pred             HHHHHHHHccc-cHHHHHHHHHHHhh
Q 025758          213 FATRLAEKSNR-SLRRAILSFETCRV  237 (248)
Q Consensus       213 ~~~~l~~~~~g-~~r~~~~~l~~~~~  237 (248)
                      .+..+++.+.| +.+++.++++.+..
T Consensus       248 ~l~~la~~t~G~sgadl~~l~~eA~~  273 (495)
T TIGR01241       248 DLKAVARRTPGFSGADLANLLNEAAL  273 (495)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            57788887765 55666666665543

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.79  E-value=3.8e-18  Score=149.80  Aligned_cols=190  Identities=20%  Similarity=0.327  Sum_probs=131.2

Q ss_pred             CCccccc-c--cHHHHHHHHHHhhcC-CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           10 KTLDQVI-V--HQDIAQNLKKLVTEQ-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        10 ~~~~~li-g--~~~~~~~l~~~~~~~-~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      .+|++++ |  +..++.....+.... .. ..++|+||+|+|||+|+++++..+.....+. .+                
T Consensus       119 ~tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~-~v----------------  181 (450)
T PRK00149        119 YTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNA-KV----------------  181 (450)
T ss_pred             CcccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-eE----------------
Confidence            3788875 3  555777777776542 22 3499999999999999999999874322110 00                


Q ss_pred             ceeeecccceeeeCCCCcC--cch---hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--HHHHHHHHHHHHh
Q 025758           85 ELTTLSSANHVELSPSDAG--FQD---RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKY  157 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~ll~~le~~  157 (248)
                                +.+......  ...   .....+..+.+           ....+|+|||++.+..  ..+..|+.+++..
T Consensus       182 ----------~yi~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l  240 (450)
T PRK00149        182 ----------VYVTSEKFTNDFVNALRNNTMEEFKEKY-----------RSVDVLLIDDIQFLAGKERTQEEFFHTFNAL  240 (450)
T ss_pred             ----------EEEEHHHHHHHHHHHHHcCcHHHHHHHH-----------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHH
Confidence                      011110000  000   00011111111           1456999999987743  3567889988876


Q ss_pred             cCC-eeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHH
Q 025758          158 SAS-CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI  229 (248)
Q Consensus       158 ~~~-~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~  229 (248)
                      ..+ ..+|++++.+.    .+.+.++||+   .++.|.+|+.+.+..++++.+...++.++++++++|++.+.||+|.+.
T Consensus       241 ~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~  320 (450)
T PRK00149        241 HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELE  320 (450)
T ss_pred             HHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHH
Confidence            433 35677776654    2667899999   589999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHhh
Q 025758          230 LSFETCRV  237 (248)
Q Consensus       230 ~~l~~~~~  237 (248)
                      ..|+.+..
T Consensus       321 ~~l~~l~~  328 (450)
T PRK00149        321 GALNRLIA  328 (450)
T ss_pred             HHHHHHHH
Confidence            87777664

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.79  E-value=1.1e-17  Score=136.58  Aligned_cols=115  Identities=23%  Similarity=0.246  Sum_probs=98.2

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC------------CcccHHHhhhhheeeecCCCHHHHHHH
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS------------SKVTEAIRSRCLNIRINSPTEEQIVKV  197 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~------------~~~~~~l~sR~~~i~~~~~~~~~~~~i  197 (248)
                      =|.|+||||+++||-++...|.+.+|+.- .+.+|+.||.-            ..++.++.+|..+|.-.||+.++++.|
T Consensus       291 VpGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireI  369 (450)
T COG1224         291 VPGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREI  369 (450)
T ss_pred             ecceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHH
Confidence            37799999999999999999999999743 25677777743            479999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHc-cccHHHHHHHHHHHhhhcccccCC
Q 025758          198 LEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQLRFTMP  245 (248)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~~~~~  245 (248)
                      +..++..+++.+++++++++++.. ..++|.++++|.-+...+.+..++
T Consensus       370 i~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~  418 (450)
T COG1224         370 IRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSK  418 (450)
T ss_pred             HHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCC
Confidence            999999999999999999999886 467999999998655555444333

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=99.78  E-value=7.6e-18  Score=139.37  Aligned_cols=106  Identities=28%  Similarity=0.300  Sum_probs=82.6

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC------------CcccHHHhhhhheeeecCCCHHHHHHH
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS------------SKVTEAIRSRCLNIRINSPTEEQIVKV  197 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~------------~~~~~~l~sR~~~i~~~~~~~~~~~~i  197 (248)
                      -|.|+||||+++||.++...|.+++|..- .+.+|++||+.            ..++.+|.+||.+|...||+.+++.++
T Consensus       278 vpGVLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~I  356 (398)
T PF06068_consen  278 VPGVLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQI  356 (398)
T ss_dssp             EE-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHH
T ss_pred             ecceEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHH
Confidence            57899999999999999999999999643 35788888844            468889999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHc-cccHHHHHHHHHHHh
Q 025758          198 LEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCR  236 (248)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~  236 (248)
                      +.-+++.|++.+++++++.+.+.. ..++|.++++|.-+.
T Consensus       357 l~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~  396 (398)
T PF06068_consen  357 LKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS  396 (398)
T ss_dssp             HHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred             HHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence            999999999999999999999776 568999999987654

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.78  E-value=1.8e-17  Score=144.63  Aligned_cols=195  Identities=14%  Similarity=0.218  Sum_probs=134.5

Q ss_pred             CCCcccccc---cHHHHHHHHHHhhc-CC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758            9 PKTLDQVIV---HQDIAQNLKKLVTE-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus         9 p~~~~~lig---~~~~~~~l~~~~~~-~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      +.||++++.   +..+......+... +. ...++|+|++|+|||+|+++++..+.....+. ++               
T Consensus       111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~-~v---------------  174 (450)
T PRK14087        111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDL-KV---------------  174 (450)
T ss_pred             ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCC-eE---------------
Confidence            468888874   44466666666653 22 23499999999999999999998764322111 00               


Q ss_pred             cceeeecccceeeeCCCCcCcchhHHHH---HHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhc
Q 025758           84 LELTTLSSANHVELSPSDAGFQDRYVVQ---EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYS  158 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~  158 (248)
                                 +.+..+.....-.....   +.+..+...       ....++++|||++.+.  ...+..|+++++...
T Consensus       175 -----------~yv~~~~f~~~~~~~l~~~~~~~~~~~~~-------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~  236 (450)
T PRK14087        175 -----------SYMSGDEFARKAVDILQKTHKEIEQFKNE-------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI  236 (450)
T ss_pred             -----------EEEEHHHHHHHHHHHHHHhhhHHHHHHHH-------hccCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence                       11111110000000000   112222221       1256799999998876  567889999998764


Q ss_pred             CC-eeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccccHHHH
Q 025758          159 AS-CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGL--QLPSGFATRLAEKSNRSLRRA  228 (248)
Q Consensus       159 ~~-~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~  228 (248)
                      .. ..+|++++.++    .+.+.+.||+   .++.+.+|+.+++..+|++.+...++  .++++++++|+..+.||+|.+
T Consensus       237 ~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L  316 (450)
T PRK14087        237 ENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKI  316 (450)
T ss_pred             HcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHH
Confidence            44 35777777664    3567889998   58999999999999999999998875  699999999999999999999


Q ss_pred             HHHHHHHhh
Q 025758          229 ILSFETCRV  237 (248)
Q Consensus       229 ~~~l~~~~~  237 (248)
                      .+.|+.+..
T Consensus       317 ~gaL~~l~~  325 (450)
T PRK14087        317 KGSVSRLNF  325 (450)
T ss_pred             HHHHHHHHH
Confidence            999988764

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=99.78  E-value=2.5e-17  Score=128.95  Aligned_cols=176  Identities=12%  Similarity=0.136  Sum_probs=129.3

Q ss_pred             HHHHHHhhcCCCCe-eEEECCCC-CCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           23 QNLKKLVTEQDCPH-LLFYGPPG-SGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        23 ~~l~~~~~~~~~~~-ill~Gp~G-~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      ..|.+.++.+++.| ++|.|.++ +||..++..++..++|..   +.         .           ..+++...+.++
T Consensus         3 ~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~---i~---------~-----------~~HPD~~~I~pe   59 (263)
T PRK06581          3 ERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNS---IP---------L-----------ENNPDYHFIARE   59 (263)
T ss_pred             HHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccC---cc---------c-----------CCCCCEEEEecc
Confidence            46778889999998 99999998 999999999999886652   11         1           112333344443


Q ss_pred             C-----cCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccH
Q 025758          101 D-----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE  175 (248)
Q Consensus       101 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~  175 (248)
                      .     ........++++.+.+.. .|.    .++.+|++||++|.|..++.|+|+|++|+|+.++.||++|+++..+++
T Consensus        60 ~~~~~~~~~I~IdqIReL~~~l~~-~p~----~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLp  134 (263)
T PRK06581         60 TSATSNAKNISIEQIRKLQDFLSK-TSA----ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIIS  134 (263)
T ss_pred             ccccccCCcccHHHHHHHHHHHhh-Ccc----cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCch
Confidence            2     123344556665554443 332    568999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHH
Q 025758          176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI  229 (248)
Q Consensus       176 ~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~  229 (248)
                      +++|||+.+.|+.|......++....+..   ..+...++.|.+...-|....+
T Consensus       135 TIrSRCq~i~~~~p~~~~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~  185 (263)
T PRK06581        135 TIRSRCFKINVRSSILHAYNELYSQFIQP---IADNKTLDFINRFTTKDRELWL  185 (263)
T ss_pred             hHhhceEEEeCCCCCHHHHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHH
Confidence            99999999999999987777766543322   2334557777666544433333

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=5.1e-18  Score=152.96  Aligned_cols=200  Identities=18%  Similarity=0.325  Sum_probs=143.8

Q ss_pred             ccccccHHHHHHHHHHhh--------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758           13 DQVIVHQDIAQNLKKLVT--------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~--------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      +.++||++++..+.+.+.        +.++. .++|.||+|+|||.||+.+|..|+.....-++++...|...+...+  
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSr--  568 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSR--  568 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHH--
Confidence            356899999999998874        22333 3999999999999999999999998888888888876653332222  


Q ss_pred             cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----  158 (248)
                                .++-.|..-|...+....+.++            .+.+.|+++||++..+|+..+.|++++++..     
T Consensus       569 ----------LIGaPPGYVGyeeGG~LTEaVR------------r~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~  626 (786)
T COG0542         569 ----------LIGAPPGYVGYEEGGQLTEAVR------------RKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQ  626 (786)
T ss_pred             ----------HhCCCCCCceeccccchhHhhh------------cCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCC
Confidence                      2444444444444333444333            3457799999999999999999999998753     


Q ss_pred             ------CCeeEEEEecCCC----------------------------cccHHHhhhhh-eeeecCCCHHHHHHHHHHHHH
Q 025758          159 ------ASCRLILCCNSSS----------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK  203 (248)
Q Consensus       159 ------~~~~~Il~t~~~~----------------------------~~~~~l~sR~~-~i~~~~~~~~~~~~il~~~~~  203 (248)
                            +|+.+|+|||--.                            .+.|.++.|+- +|.|.+++.+.+.+|+...+.
T Consensus       627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~  706 (786)
T COG0542         627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLN  706 (786)
T ss_pred             CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHH
Confidence                  4566888887331                            24556667774 999999999999998887655


Q ss_pred             H-------cCC--CCCHHHHHHHHHHcc---ccHHHHHHHHHHHh
Q 025758          204 K-------EGL--QLPSGFATRLAEKSN---RSLRRAILSFETCR  236 (248)
Q Consensus       204 ~-------~~~--~~~~~~~~~l~~~~~---g~~r~~~~~l~~~~  236 (248)
                      +       .++  .+++++.++|++.+.   -.+|-+.+.++.-.
T Consensus       707 ~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i  751 (786)
T COG0542         707 RLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI  751 (786)
T ss_pred             HHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence            3       244  588999999998863   23566655555443

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=4.5e-18  Score=149.45  Aligned_cols=196  Identities=17%  Similarity=0.226  Sum_probs=133.0

Q ss_pred             ccccccHHHHHHHHHHhhc----CCCC--eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce
Q 025758           13 DQVIVHQDIAQNLKKLVTE----QDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~----~~~~--~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (248)
                      +|.+|-..+++.+..++.=    |...  .+||+||||+|||++++.||+.|++ .+-.+.++|..-......+++    
T Consensus       411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-kFfRfSvGG~tDvAeIkGHRR----  485 (906)
T KOG2004|consen  411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR-KFFRFSVGGMTDVAEIKGHRR----  485 (906)
T ss_pred             ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-ceEEEeccccccHHhhcccce----
Confidence            3557888888888877752    3333  3999999999999999999997744 333344444322211111211    


Q ss_pred             eeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH----HHHHHHHHHHH------
Q 025758           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTMEK------  156 (248)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----~~~~ll~~le~------  156 (248)
                               .|...-+|     .+.++++....          .+++++|||+|.++..    =..+|+++++-      
T Consensus       486 ---------TYVGAMPG-----kiIq~LK~v~t----------~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanF  541 (906)
T KOG2004|consen  486 ---------TYVGAMPG-----KIIQCLKKVKT----------ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANF  541 (906)
T ss_pred             ---------eeeccCCh-----HHHHHHHhhCC----------CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccch
Confidence                     22222222     13344554433          5569999999998632    14567777752      


Q ss_pred             -------hc--CCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHH
Q 025758          157 -------YS--ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----------KEGLQLPSGFATRL  217 (248)
Q Consensus       157 -------~~--~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~----------~~~~~~~~~~~~~l  217 (248)
                             +-  +.+.||+|+|..+.++++|++|+.+|.++.|..++-.+|....+-          .+.+.+++.++..|
T Consensus       542 lDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~l  621 (906)
T KOG2004|consen  542 LDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLAL  621 (906)
T ss_pred             hhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHH
Confidence                   10  224599999999999999999999999999999999999888754          24567889998888


Q ss_pred             HHHccc--cHHHHHHHHHHHhh
Q 025758          218 AEKSNR--SLRRAILSFETCRV  237 (248)
Q Consensus       218 ~~~~~g--~~r~~~~~l~~~~~  237 (248)
                      ++...+  ..|.+-+.++.++.
T Consensus       622 I~~YcrEaGVRnLqk~iekI~R  643 (906)
T KOG2004|consen  622 IERYCREAGVRNLQKQIEKICR  643 (906)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHH
Confidence            877643  37777777766653

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.78  E-value=5.6e-18  Score=146.96  Aligned_cols=193  Identities=19%  Similarity=0.309  Sum_probs=128.7

Q ss_pred             CCccccc-c--cHHHHHHHHHHhhcC-CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcc--cceecccceeeccCCccc
Q 025758           10 KTLDQVI-V--HQDIAQNLKKLVTEQ-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNI   82 (248)
Q Consensus        10 ~~~~~li-g--~~~~~~~l~~~~~~~-~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~--~~~~~~~~~~~~~~~~~~   82 (248)
                      .+|++++ |  +..+...+..+.... .. ..++|+||+|+|||+++++++.++.....+  .+.+....+.        
T Consensus       107 ~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~--------  178 (405)
T TIGR00362       107 YTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT--------  178 (405)
T ss_pred             CcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH--------
Confidence            4677754 4  444666666666542 22 238999999999999999999987432211  0011000000        


Q ss_pred             ccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--HHHHHHHHHHHHhc-C
Q 025758           83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYS-A  159 (248)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~ll~~le~~~-~  159 (248)
                               .   .+... ..   .....+..+.+           ...++++|||++.+..  ..+..|+++++... .
T Consensus       179 ---------~---~~~~~-~~---~~~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~  231 (405)
T TIGR00362       179 ---------N---DFVNA-LR---NNKMEEFKEKY-----------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN  231 (405)
T ss_pred             ---------H---HHHHH-HH---cCCHHHHHHHH-----------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC
Confidence                     0   00000 00   00011111111           1356999999987743  45678999998763 3


Q ss_pred             CeeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHH
Q 025758          160 SCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF  232 (248)
Q Consensus       160 ~~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l  232 (248)
                      +..+|++++.+.    .+.+.++||+   ..+.|++|+.+++..++++.+...++.++++++++|++...+|+|.+...|
T Consensus       232 ~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l  311 (405)
T TIGR00362       232 GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGAL  311 (405)
T ss_pred             CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence            356777777654    3567899998   479999999999999999999999999999999999999999999987777


Q ss_pred             HHHhh
Q 025758          233 ETCRV  237 (248)
Q Consensus       233 ~~~~~  237 (248)
                      +.+..
T Consensus       312 ~~l~~  316 (405)
T TIGR00362       312 NRLLA  316 (405)
T ss_pred             HHHHH
Confidence            66654

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>TIGR00763 lon ATP-dependent protease La

Probab=99.77  E-value=3.1e-18  Score=158.92  Aligned_cols=194  Identities=15%  Similarity=0.183  Sum_probs=125.2

Q ss_pred             cccccHHHHHHHHHHhh------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758           14 QVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      +++|++.+++.+..++.      ..+.++++|+||||+|||++|+++|+.+.. ....+...+...              
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-~~~~i~~~~~~~--------------  385 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR-KFVRFSLGGVRD--------------  385 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-CeEEEeCCCccc--------------
Confidence            46899999999888663      123456999999999999999999997632 222221111000              


Q ss_pred             eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH----HHHHHHHHHHh------
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKY------  157 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~----~~~ll~~le~~------  157 (248)
                         .....+......+.... .+.+.+....          ....|++|||+|.+.+..    .++|+++++..      
T Consensus       386 ---~~~i~g~~~~~~g~~~g-~i~~~l~~~~----------~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~  451 (775)
T TIGR00763       386 ---EAEIRGHRRTYVGAMPG-RIIQGLKKAK----------TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFS  451 (775)
T ss_pred             ---HHHHcCCCCceeCCCCc-hHHHHHHHhC----------cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccc
Confidence               00000000000011111 1222222111          133499999999997532    47788888641      


Q ss_pred             ---------cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHH
Q 025758          158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-----K-----EGLQLPSGFATRLA  218 (248)
Q Consensus       158 ---------~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~-----~-----~~~~~~~~~~~~l~  218 (248)
                               ..++.||+++|....+.+++++||.+|.|++|+.++...|+...+.     .     +++.++++++..|+
T Consensus       452 d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~  531 (775)
T TIGR00763       452 DHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLI  531 (775)
T ss_pred             cccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHH
Confidence                     0346788999999999999999999999999999999999987652     2     24578999999999


Q ss_pred             HHccc--cHHHHHHHHHHHh
Q 025758          219 EKSNR--SLRRAILSFETCR  236 (248)
Q Consensus       219 ~~~~g--~~r~~~~~l~~~~  236 (248)
                      +.+..  .+|.+...++..+
T Consensus       532 ~~~~~e~g~R~l~r~i~~~~  551 (775)
T TIGR00763       532 KYYTREAGVRNLERQIEKIC  551 (775)
T ss_pred             HhcChhcCChHHHHHHHHHH
Confidence            86542  4666655555555

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.77  E-value=8.7e-18  Score=155.16  Aligned_cols=203  Identities=18%  Similarity=0.254  Sum_probs=141.8

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      .++++.||.++++++|+++.+..+...+..+...+++|+||||+|||++++.+|..+....... ...+..         
T Consensus       171 ~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~-~l~~~~---------  240 (731)
T TIGR02639       171 DLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPE-NLKNAK---------  240 (731)
T ss_pred             hHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCch-hhcCCe---------
Confidence            3678889999999999999999888888777777899999999999999999999763321100 000000         


Q ss_pred             cccceeeecccceeeeCCCCc--Ccc----hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------HHH
Q 025758           82 IDLELTTLSSANHVELSPSDA--GFQ----DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REA  146 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~  146 (248)
                                  .+.+.....  +..    ....+...++.+..         ..+.|+||||++.+.         .+.
T Consensus       241 ------------~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~---------~~~~ILfiDEih~l~~~g~~~~~~~~~  299 (731)
T TIGR02639       241 ------------IYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK---------EPNAILFIDEIHTIVGAGATSGGSMDA  299 (731)
T ss_pred             ------------EEEecHHHHhhhccccchHHHHHHHHHHHHhc---------cCCeEEEEecHHHHhccCCCCCccHHH
Confidence                        011111100  011    11123333443332         145699999999774         234


Q ss_pred             HHHHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHH
Q 025758          147 QHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRL  217 (248)
Q Consensus       147 ~~~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l  217 (248)
                      .+.|...+++  ....+|.+|+..+     ...+++.+||..|.++.|+.++...+|+.....    .++.++++++..+
T Consensus       300 ~~~L~~~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~  377 (731)
T TIGR02639       300 SNLLKPALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAA  377 (731)
T ss_pred             HHHHHHHHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHH
Confidence            5566666653  3456777777532     578899999999999999999999999987765    3567899999999


Q ss_pred             HHHccc---c---HHHHHHHHHHHhh
Q 025758          218 AEKSNR---S---LRRAILSFETCRV  237 (248)
Q Consensus       218 ~~~~~g---~---~r~~~~~l~~~~~  237 (248)
                      +..+.+   +   ++.++++++.++.
T Consensus       378 ~~ls~ryi~~r~~P~kai~lld~a~a  403 (731)
T TIGR02639       378 VELSARYINDRFLPDKAIDVIDEAGA  403 (731)
T ss_pred             HHhhhcccccccCCHHHHHHHHHhhh
Confidence            877642   3   8889999998875

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.77  E-value=1.3e-17  Score=155.31  Aligned_cols=203  Identities=18%  Similarity=0.251  Sum_probs=141.1

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (248)
                      .+++.||.++++++|+++.++.+...+..++.++++|+||||+|||++++.+|+.+...... ..+.+.           
T Consensus       177 L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~-~~l~~~-----------  244 (852)
T TIGR03345       177 LTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP-PALRNV-----------  244 (852)
T ss_pred             HHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCC-ccccCC-----------
Confidence            56788999999999999999988888878777889999999999999999999976332100 000000           


Q ss_pred             ccceeeecccceeeeCCCC--cCcch----hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--------HHHH
Q 025758           83 DLELTTLSSANHVELSPSD--AGFQD----RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQH  148 (248)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~  148 (248)
                                ..+.+....  .+...    ...+...++....        ...+.|+||||++.+..        ++.+
T Consensus       245 ----------~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~--------~~~~~ILfIDEih~l~~~g~~~~~~d~~n  306 (852)
T TIGR03345       245 ----------RLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA--------SPQPIILFIDEAHTLIGAGGQAGQGDAAN  306 (852)
T ss_pred             ----------eEEEeehhhhhcccccchHHHHHHHHHHHHHHh--------cCCCeEEEEeChHHhccCCCccccccHHH
Confidence                      001111111  11111    1234444554432        12567999999988742        2234


Q ss_pred             HHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 025758          149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE  219 (248)
Q Consensus       149 ~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~  219 (248)
                      .|...++.  ....+|.+|+..+     ...++|.+||..|.+++|+.++...+|......    .++.++++++..++.
T Consensus       307 ~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~  384 (852)
T TIGR03345       307 LLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVE  384 (852)
T ss_pred             HhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHH
Confidence            46666553  3466777777642     588999999999999999999999997655443    367889999999998


Q ss_pred             Hccc------cHHHHHHHHHHHhh
Q 025758          220 KSNR------SLRRAILSFETCRV  237 (248)
Q Consensus       220 ~~~g------~~r~~~~~l~~~~~  237 (248)
                      .+.+      -+..++++|+.++.
T Consensus       385 ls~ryi~~r~LPDKAIdlldea~a  408 (852)
T TIGR03345       385 LSHRYIPGRQLPDKAVSLLDTACA  408 (852)
T ss_pred             HcccccccccCccHHHHHHHHHHH
Confidence            7742      47889999998775

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=9.2e-18  Score=143.31  Aligned_cols=193  Identities=18%  Similarity=0.254  Sum_probs=133.3

Q ss_pred             CCCcccccccHHHHHHHHHHhh-----------cCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~-----------~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      -.+|+|+-|.+++++.|...++           .|++|. +||+||||+|||.|||++|++.           +.+|.+.
T Consensus       300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-----------~VPFF~~  368 (752)
T KOG0734|consen  300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-----------GVPFFYA  368 (752)
T ss_pred             ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-----------CCCeEec
Confidence            4679999999999999888764           577776 9999999999999999999864           3344433


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------H
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E  145 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~  145 (248)
                      ++..+...         +++        .....+++++.....         +.|.||||||+|..+.           .
T Consensus       369 sGSEFdEm---------~VG--------vGArRVRdLF~aAk~---------~APcIIFIDEiDavG~kR~~~~~~y~kq  422 (752)
T KOG0734|consen  369 SGSEFDEM---------FVG--------VGARRVRDLFAAAKA---------RAPCIIFIDEIDAVGGKRNPSDQHYAKQ  422 (752)
T ss_pred             cccchhhh---------hhc--------ccHHHHHHHHHHHHh---------cCCeEEEEechhhhcccCCccHHHHHHH
Confidence            43332200         011        122336666665443         4678999999998751           2


Q ss_pred             HHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHH
Q 025758          146 AQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-ATRLAE  219 (248)
Q Consensus       146 ~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~-~~~l~~  219 (248)
                      ..|.|+--++.+.+|  .++|-.||-++.+.++|..  |+ ..|..+.|+.....+||...+.+-.  +++++ ...|++
T Consensus       423 TlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~--~~~~VD~~iiAR  500 (752)
T KOG0734|consen  423 TLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP--LDEDVDPKIIAR  500 (752)
T ss_pred             HHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC--cccCCCHhHhcc
Confidence            234455555555554  4556668888889999976  44 6899999999999999998886533  33332 566676


Q ss_pred             Hccc-cHHHHHHHHHHHhhhcc
Q 025758          220 KSNR-SLRRAILSFETCRVQQL  240 (248)
Q Consensus       220 ~~~g-~~r~~~~~l~~~~~~~~  240 (248)
                      .+.| +..++.|++++++..+.
T Consensus       501 GT~GFsGAdLaNlVNqAAlkAa  522 (752)
T KOG0734|consen  501 GTPGFSGADLANLVNQAALKAA  522 (752)
T ss_pred             CCCCCchHHHHHHHHHHHHHHH
Confidence            6665 57777888887776554

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.76  E-value=3.4e-17  Score=140.50  Aligned_cols=197  Identities=18%  Similarity=0.277  Sum_probs=127.7

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHhh----------c-C--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLVT----------E-Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~~----------~-~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~   71 (248)
                      +.-...+|+|+.|.+..++.+...+.          . |  ...+++|+||||||||++|+++|+.+..+   .+.+.+.
T Consensus       137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~---fi~i~~s  213 (398)
T PTZ00454        137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT---FIRVVGS  213 (398)
T ss_pred             cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC---EEEEehH
Confidence            34456789999999999988887663          1 1  23349999999999999999999865211   1111110


Q ss_pred             ceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------
Q 025758           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------  143 (248)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------  143 (248)
                      .+.                    -.+    .+ .....+.+.+....         ...|.|++|||+|.+.        
T Consensus       214 ~l~--------------------~k~----~g-e~~~~lr~lf~~A~---------~~~P~ILfIDEID~i~~~r~~~~~  259 (398)
T PTZ00454        214 EFV--------------------QKY----LG-EGPRMVRDVFRLAR---------ENAPSIIFIDEVDSIATKRFDAQT  259 (398)
T ss_pred             HHH--------------------HHh----cc-hhHHHHHHHHHHHH---------hcCCeEEEEECHhhhccccccccC
Confidence            000                    000    00 01122444444332         2367899999998762        


Q ss_pred             ---HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 025758          144 ---REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (248)
Q Consensus       144 ---~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~  212 (248)
                         ...+..+..++...     ..+..+|++||++..+.+++.+  |+ ..|.|+.|+.++...+++..+.+.++..+ -
T Consensus       260 ~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d-v  338 (398)
T PTZ00454        260 GADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE-V  338 (398)
T ss_pred             CccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc-c
Confidence               23344455554432     2356799999999999999876  66 57999999999999999988876655422 2


Q ss_pred             HHHHHHHHccc-cHHHHHHHHHHHhhhc
Q 025758          213 FATRLAEKSNR-SLRRAILSFETCRVQQ  239 (248)
Q Consensus       213 ~~~~l~~~~~g-~~r~~~~~l~~~~~~~  239 (248)
                      .+..++..+.| +.+++.++++.+...+
T Consensus       339 d~~~la~~t~g~sgaDI~~l~~eA~~~A  366 (398)
T PTZ00454        339 DLEDFVSRPEKISAADIAAICQEAGMQA  366 (398)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            36667766644 5777777777766543

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=3.2e-17  Score=139.02  Aligned_cols=222  Identities=15%  Similarity=0.195  Sum_probs=146.7

Q ss_pred             ccCCCCCcccccccHHHHHHHH----HHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCccc--ceecccceeeccC
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLK----KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEK--VKVENKTWKIDAG   78 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~----~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~--~~~~~~~~~~~~~   78 (248)
                      +-|-|..   +.+.+..+..+.    .++.++.+.+++++||+|||||++++.+++++.......  +.+++..+.  .+
T Consensus        12 ~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~--t~   86 (366)
T COG1474          12 EDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELR--TP   86 (366)
T ss_pred             CCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCC--CH
Confidence            4466644   666666555554    444555555699999999999999999999987664433  444443222  10


Q ss_pred             CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~  158 (248)
                      .      .......+.+. .....|...........+.+..        ....-|++|||+|.|.......|+.++....
T Consensus        87 ~------~i~~~i~~~~~-~~p~~g~~~~~~~~~l~~~~~~--------~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~  151 (366)
T COG1474          87 Y------QVLSKILNKLG-KVPLTGDSSLEILKRLYDNLSK--------KGKTVIVILDEVDALVDKDGEVLYSLLRAPG  151 (366)
T ss_pred             H------HHHHHHHHHcC-CCCCCCCchHHHHHHHHHHHHh--------cCCeEEEEEcchhhhccccchHHHHHHhhcc
Confidence            0      00001111111 2233344444444444444443        3467799999999887655567777776543


Q ss_pred             CC---eeEEEEecCCC---cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH---ccccH
Q 025758          159 AS---CRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEK---SNRSL  225 (248)
Q Consensus       159 ~~---~~~Il~t~~~~---~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~~--~~~~~~~~~~~l~~~---~~g~~  225 (248)
                      .+   ..+|.++|+..   .+.+.++|+.  ..|.|+||+.+|+..|+..+++..  .-.+++++++.++..   ..||+
T Consensus       152 ~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDA  231 (366)
T COG1474         152 ENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDA  231 (366)
T ss_pred             ccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccH
Confidence            33   45777778774   5777778877  469999999999999999998752  336888998888744   46799


Q ss_pred             HHHHHHHHHHhhhcccccCCC
Q 025758          226 RRAILSFETCRVQQLRFTMPS  246 (248)
Q Consensus       226 r~~~~~l~~~~~~~~~~~~~~  246 (248)
                      |.++.+|..++..+.......
T Consensus       232 R~aidilr~A~eiAe~~~~~~  252 (366)
T COG1474         232 RKAIDILRRAGEIAEREGSRK  252 (366)
T ss_pred             HHHHHHHHHHHHHHHhhCCCC
Confidence            999999999998777544433

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.76  E-value=2.7e-17  Score=145.76  Aligned_cols=192  Identities=16%  Similarity=0.255  Sum_probs=131.5

Q ss_pred             CCcccccc---cHHHHHHHHHHhhc-CCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           10 KTLDQVIV---HQDIAQNLKKLVTE-QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        10 ~~~~~lig---~~~~~~~l~~~~~~-~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      .+|++++.   +..+...+..++.. +...+ ++|+|++|+|||+|+++|+..+.....+. +                 
T Consensus       285 ~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~-~-----------------  346 (617)
T PRK14086        285 YTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGT-R-----------------  346 (617)
T ss_pred             CCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCC-e-----------------
Confidence            57889874   33345455555543 22223 99999999999999999999763211110 0                 


Q ss_pred             ceeeecccceeeeCC-CCcC--cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcC
Q 025758           85 ELTTLSSANHVELSP-SDAG--FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA  159 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~  159 (248)
                                +.|.. +...  ..... ....+..+.+.       -...++|+|||++.+.  ...+..|+++++....
T Consensus       347 ----------V~Yitaeef~~el~~al-~~~~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e  408 (617)
T PRK14086        347 ----------VRYVSSEEFTNEFINSI-RDGKGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHN  408 (617)
T ss_pred             ----------EEEeeHHHHHHHHHHHH-HhccHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHh
Confidence                      11111 0000  00000 00001111111       1246799999998774  3457889999988754


Q ss_pred             C-eeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHH
Q 025758          160 S-CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS  231 (248)
Q Consensus       160 ~-~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~  231 (248)
                      + ..+|++++...    .+.+.|+||+   .++.+.+|+.+.+..||++.+..+++.++++++++|+++..+|+|.+...
T Consensus       409 ~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~Lega  488 (617)
T PRK14086        409 ANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGA  488 (617)
T ss_pred             cCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHH
Confidence            3 45777777653    4778999998   68999999999999999999999999999999999999999999999888


Q ss_pred             HHHHhh
Q 025758          232 FETCRV  237 (248)
Q Consensus       232 l~~~~~  237 (248)
                      |+.+..
T Consensus       489 L~rL~a  494 (617)
T PRK14086        489 LIRVTA  494 (617)
T ss_pred             HHHHHH
Confidence            877653

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.76  E-value=4.3e-17  Score=152.19  Aligned_cols=185  Identities=18%  Similarity=0.316  Sum_probs=126.0

Q ss_pred             ccccccHHHHHHHHHHhhc--------CCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758           13 DQVIVHQDIAQNLKKLVTE--------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~--------~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      +.++||+.+++.+...+..        +++.+ ++|+||+|+|||++|+++|..+++.....++++...|......    
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~----  584 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV----  584 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH----
Confidence            4578999999999887742        22233 8999999999999999999998876655555555433211110    


Q ss_pred             cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----  158 (248)
                              ...++-.+...+......+.   . ...        ...+.|+++||+|.+++..++.|++++++..     
T Consensus       585 --------~~l~g~~~gyvg~~~~~~l~---~-~~~--------~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~  644 (821)
T CHL00095        585 --------SKLIGSPPGYVGYNEGGQLT---E-AVR--------KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK  644 (821)
T ss_pred             --------HHhcCCCCcccCcCccchHH---H-HHH--------hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCC
Confidence                    00011111111111111122   2 222        2245799999999999999999999999742     


Q ss_pred             ------CCeeEEEEecCCCc-------------------------------------ccHHHhhhh-heeeecCCCHHHH
Q 025758          159 ------ASCRLILCCNSSSK-------------------------------------VTEAIRSRC-LNIRINSPTEEQI  194 (248)
Q Consensus       159 ------~~~~~Il~t~~~~~-------------------------------------~~~~l~sR~-~~i~~~~~~~~~~  194 (248)
                            .++.||+|||-...                                     +.|.+.+|+ .++.|.+++.+++
T Consensus       645 g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l  724 (821)
T CHL00095        645 GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDV  724 (821)
T ss_pred             CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHH
Confidence                  45678888874311                                     235678888 7999999999999


Q ss_pred             HHHHHHHHHH-------c--CCCCCHHHHHHHHHHc
Q 025758          195 VKVLEFIAKK-------E--GLQLPSGFATRLAEKS  221 (248)
Q Consensus       195 ~~il~~~~~~-------~--~~~~~~~~~~~l~~~~  221 (248)
                      .+|+...+.+       .  .+.+++++.++|++..
T Consensus       725 ~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~  760 (821)
T CHL00095        725 WEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG  760 (821)
T ss_pred             HHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence            9998887663       2  3468899999999874

>CHL00176 ftsH cell division protein; Validated

Probab=99.75  E-value=5.8e-17  Score=146.14  Aligned_cols=192  Identities=19%  Similarity=0.312  Sum_probs=126.3

Q ss_pred             CCCcccccccHHHHHHHHHHhh---c--------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVT---E--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~---~--------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      ..+|+|++|.+++++.+...+.   .        ...+ +++|+||||||||++|+++|++...+-   +.+.+..+   
T Consensus       179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~---i~is~s~f---  252 (638)
T CHL00176        179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF---FSISGSEF---  252 (638)
T ss_pred             CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---eeccHHHH---
Confidence            4689999999998888776652   1        1223 499999999999999999998652211   11111000   


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------H
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E  145 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~  145 (248)
                                        ..   ...+. ....+++.+....         ...|.|++|||+|.+..           .
T Consensus       253 ------------------~~---~~~g~-~~~~vr~lF~~A~---------~~~P~ILfIDEID~l~~~r~~~~~~~~~e  301 (638)
T CHL00176        253 ------------------VE---MFVGV-GAARVRDLFKKAK---------ENSPCIVFIDEIDAVGRQRGAGIGGGNDE  301 (638)
T ss_pred             ------------------HH---Hhhhh-hHHHHHHHHHHHh---------cCCCcEEEEecchhhhhcccCCCCCCcHH
Confidence                              00   00000 1112344444332         23567999999988732           2


Q ss_pred             HHHHHHHHH---HHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758          146 AQHSLRRTM---EKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (248)
Q Consensus       146 ~~~~ll~~l---e~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l  217 (248)
                      ....+..++   +...  .+..+|.+||++..+.+++.+  |+ ..+.|+.|+.+++..++..++.+..+ .++..+..+
T Consensus       302 ~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~l  380 (638)
T CHL00176        302 REQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELI  380 (638)
T ss_pred             HHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHH
Confidence            233344444   4332  345688888998889999986  44 68999999999999999998877443 345568889


Q ss_pred             HHHccc-cHHHHHHHHHHHhhh
Q 025758          218 AEKSNR-SLRRAILSFETCRVQ  238 (248)
Q Consensus       218 ~~~~~g-~~r~~~~~l~~~~~~  238 (248)
                      +..+.| +.+++.++++.+...
T Consensus       381 A~~t~G~sgaDL~~lvneAal~  402 (638)
T CHL00176        381 ARRTPGFSGADLANLLNEAAIL  402 (638)
T ss_pred             HhcCCCCCHHHHHHHHHHHHHH
Confidence            988877 777887888776644

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.75  E-value=6.6e-17  Score=139.09  Aligned_cols=193  Identities=20%  Similarity=0.258  Sum_probs=123.4

Q ss_pred             CCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~   74 (248)
                      ...+++++.|.+..++.+...+..             ....+++|+||||||||++|+++|..+..+   .+.+.+..+ 
T Consensus       126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~---~i~v~~~~l-  201 (389)
T PRK03992        126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT---FIRVVGSEL-  201 (389)
T ss_pred             CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC---EEEeehHHH-
Confidence            356789999999999888876631             123349999999999999999999976321   111111000 


Q ss_pred             eccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-----------
Q 025758           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------  143 (248)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------  143 (248)
                                             .....+. ....+.+.+....         ...+.||+|||+|.+.           
T Consensus       202 -----------------------~~~~~g~-~~~~i~~~f~~a~---------~~~p~IlfiDEiD~l~~~r~~~~~~~~  248 (389)
T PRK03992        202 -----------------------VQKFIGE-GARLVRELFELAR---------EKAPSIIFIDEIDAIAAKRTDSGTSGD  248 (389)
T ss_pred             -----------------------hHhhccc-hHHHHHHHHHHHH---------hcCCeEEEEechhhhhcccccCCCCcc
Confidence                                   0000010 1112333343322         2356799999999872           


Q ss_pred             HHHHHHHHHHHHHhc-----CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758          144 REAQHSLRRTMEKYS-----ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (248)
Q Consensus       144 ~~~~~~ll~~le~~~-----~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~  215 (248)
                      ...+..+..++.+..     .+..+|++||.+..+.+++.+  |+ ..|.|++|+.++..+++...+.+..+.- +..+.
T Consensus       249 ~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~  327 (389)
T PRK03992        249 REVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLE  327 (389)
T ss_pred             HHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHH
Confidence            344555666664432     356789999999999999975  66 5799999999999999998776544431 23366


Q ss_pred             HHHHHccc-cHHHHHHHHHHHhhh
Q 025758          216 RLAEKSNR-SLRRAILSFETCRVQ  238 (248)
Q Consensus       216 ~l~~~~~g-~~r~~~~~l~~~~~~  238 (248)
                      .+++.+.| +.+++..++..+...
T Consensus       328 ~la~~t~g~sgadl~~l~~eA~~~  351 (389)
T PRK03992        328 ELAELTEGASGADLKAICTEAGMF  351 (389)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHH
Confidence            67766654 355555555555543

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.74  E-value=7.1e-17  Score=141.42  Aligned_cols=192  Identities=17%  Similarity=0.124  Sum_probs=124.7

Q ss_pred             CCCcccccccHHHHHHHHHHhh--------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVT--------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~--------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~   78 (248)
                      +.+|+++.|.+.+++.+.....        .| ..+ ++||+||||||||++|+++|+++..+-   +.++..       
T Consensus       224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~~~-------  293 (489)
T CHL00195        224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLDVG-------  293 (489)
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEEhH-------
Confidence            4678999999998888875321        12 223 499999999999999999999763221   111100       


Q ss_pred             CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH------------H
Q 025758           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------------A  146 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~------------~  146 (248)
                                    .   +.....+. ....+.+.++....         ..|.|++|||+|.+...            .
T Consensus       294 --------------~---l~~~~vGe-se~~l~~~f~~A~~---------~~P~IL~IDEID~~~~~~~~~~d~~~~~rv  346 (489)
T CHL00195        294 --------------K---LFGGIVGE-SESRMRQMIRIAEA---------LSPCILWIDEIDKAFSNSESKGDSGTTNRV  346 (489)
T ss_pred             --------------H---hcccccCh-HHHHHHHHHHHHHh---------cCCcEEEehhhhhhhccccCCCCchHHHHH
Confidence                          0   00000111 12234444543332         35679999999865321            1


Q ss_pred             HHHHHHHHHHhcCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcc
Q 025758          147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRLAEKSN  222 (248)
Q Consensus       147 ~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~-~~~~~~~~l~~~~~  222 (248)
                      .+.|+..+++......+|.+||++..+.+++..  |+ ..+.++.|+.++..+++...+.+.+.. .++..++.+++.+.
T Consensus       347 l~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~  426 (489)
T CHL00195        347 LATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSN  426 (489)
T ss_pred             HHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcC
Confidence            234566666555556788889999999999976  77 689999999999999999998885433 33555788887765


Q ss_pred             c-cHHHHHHHHHHHhh
Q 025758          223 R-SLRRAILSFETCRV  237 (248)
Q Consensus       223 g-~~r~~~~~l~~~~~  237 (248)
                      | +.+++.+.+..+..
T Consensus       427 GfSGAdI~~lv~eA~~  442 (489)
T CHL00195        427 KFSGAEIEQSIIEAMY  442 (489)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            4 45555555544443

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.74  E-value=1.9e-16  Score=147.97  Aligned_cols=201  Identities=18%  Similarity=0.293  Sum_probs=131.7

Q ss_pred             cccccccHHHHHHHHHHhhc--------CCC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc
Q 025758           12 LDQVIVHQDIAQNLKKLVTE--------QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (248)
Q Consensus        12 ~~~lig~~~~~~~l~~~~~~--------~~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (248)
                      .+.++||+.+++.+...+..        +++ ..++|+||+|||||++|+++++.+++.....+.+++..+....     
T Consensus       567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~-----  641 (857)
T PRK10865        567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH-----  641 (857)
T ss_pred             CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh-----
Confidence            35678999999988887752        222 2489999999999999999999876655444444443322000     


Q ss_pred             ccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc----
Q 025758           83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----  158 (248)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----  158 (248)
                             .....++..+...+......    +......        ..+.|++|||++.+++..++.|++++++..    
T Consensus       642 -------~~~~LiG~~pgy~g~~~~g~----l~~~v~~--------~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~  702 (857)
T PRK10865        642 -------SVSRLVGAPPGYVGYEEGGY----LTEAVRR--------RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG  702 (857)
T ss_pred             -------hHHHHhCCCCcccccchhHH----HHHHHHh--------CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecC
Confidence                   00011222221112111111    1111221        234699999999999999999999998642    


Q ss_pred             -------CCeeEEEEecCCC-------------------------cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH-
Q 025758          159 -------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK-  204 (248)
Q Consensus       159 -------~~~~~Il~t~~~~-------------------------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~-  204 (248)
                             .++.||++||...                         .+.|.|.+|+ .++.|.|++.+++..++...+.+ 
T Consensus       703 ~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l  782 (857)
T PRK10865        703 QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL  782 (857)
T ss_pred             CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence                   2345788887621                         2456888999 89999999999999998877654 


Q ss_pred             ------cC--CCCCHHHHHHHHHHccc---cHHHHHHHHHHHh
Q 025758          205 ------EG--LQLPSGFATRLAEKSNR---SLRRAILSFETCR  236 (248)
Q Consensus       205 ------~~--~~~~~~~~~~l~~~~~g---~~r~~~~~l~~~~  236 (248)
                            .+  +.++++++++|++....   .+|.+-+.++..+
T Consensus       783 ~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i  825 (857)
T PRK10865        783 YKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQI  825 (857)
T ss_pred             HHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHH
Confidence                  13  45799999999986521   3666666555544

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.73  E-value=1.1e-16  Score=135.59  Aligned_cols=196  Identities=19%  Similarity=0.312  Sum_probs=137.3

Q ss_pred             CCcccccc---cHHHHHHHHHHhhcC-C-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           10 KTLDQVIV---HQDIAQNLKKLVTEQ-D-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        10 ~~~~~lig---~~~~~~~l~~~~~~~-~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      -||++++.   ++.+......+.+.. . .+.++|+||.|+|||+|+++++...........                  
T Consensus        84 ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~------------------  145 (408)
T COG0593          84 YTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNAR------------------  145 (408)
T ss_pred             CchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCce------------------
Confidence            35677764   555666666665543 2 334999999999999999999997643222110                  


Q ss_pred             ceeeecccceeeeCCCCcCcchh-HHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--HHHHHHHHHHHHhcCCe
Q 025758           85 ELTTLSSANHVELSPSDAGFQDR-YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASC  161 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~ll~~le~~~~~~  161 (248)
                               .+.+..+..-..-. ......++.+.+.+        ..++++||+++.+..  ..+..|+++++....+.
T Consensus       146 ---------v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--------~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~  208 (408)
T COG0593         146 ---------VVYLTSEDFTNDFVKALRDNEMEKFKEKY--------SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG  208 (408)
T ss_pred             ---------EEeccHHHHHHHHHHHHHhhhHHHHHHhh--------ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC
Confidence                     01111111100000 00111233343333        346899999987753  45899999999886665


Q ss_pred             -eEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          162 -RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       162 -~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                       .+|+++..++    .+.+.|+||+   .++.+.+|+.+.+..+|++.++..++.++++++.++++...+|+|.+.-.|+
T Consensus       209 kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~  288 (408)
T COG0593         209 KQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALN  288 (408)
T ss_pred             CEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence             5666665554    4668999998   6899999999999999999999999999999999999999999999988888


Q ss_pred             HHhhhcc
Q 025758          234 TCRVQQL  240 (248)
Q Consensus       234 ~~~~~~~  240 (248)
                      .+...+.
T Consensus       289 ~l~~~a~  295 (408)
T COG0593         289 RLDAFAL  295 (408)
T ss_pred             HHHHHHH
Confidence            7775444

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.73  E-value=1.9e-16  Score=148.26  Aligned_cols=200  Identities=19%  Similarity=0.291  Sum_probs=135.3

Q ss_pred             ccccccHHHHHHHHHHhhcC--------CCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758           13 DQVIVHQDIAQNLKKLVTEQ--------DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~~--------~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      +.++||+.+++.+...+...        ++.+ ++|.||+|+|||++|++++..+++.....+.+++..+....      
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~------  638 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH------  638 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc------
Confidence            45799999999988877531        2233 99999999999999999999876655444444443332000      


Q ss_pred             cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----  158 (248)
                            .....++..+...+......+.+.+    ...        .+.|+++||++.+++..++.|++++++..     
T Consensus       639 ------~~~~l~g~~~g~~g~~~~g~l~~~v----~~~--------p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~  700 (852)
T TIGR03346       639 ------SVARLIGAPPGYVGYEEGGQLTEAV----RRK--------PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQ  700 (852)
T ss_pred             ------hHHHhcCCCCCccCcccccHHHHHH----HcC--------CCcEEEEeccccCCHHHHHHHHHHHhcCceecCC
Confidence                  0011122222222221111122222    112        34699999999999999999999998752     


Q ss_pred             ------CCeeEEEEecCCCc-------------------------ccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH--
Q 025758          159 ------ASCRLILCCNSSSK-------------------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK--  204 (248)
Q Consensus       159 ------~~~~~Il~t~~~~~-------------------------~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~--  204 (248)
                            .++.||++||-...                         +.+.|..|+ .++.|.|++.+++.+|+...+..  
T Consensus       701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~  780 (852)
T TIGR03346       701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLR  780 (852)
T ss_pred             CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHH
Confidence                  34568888886321                         335566777 68999999999999998877652  


Q ss_pred             -----c--CCCCCHHHHHHHHHHc---cccHHHHHHHHHHHh
Q 025758          205 -----E--GLQLPSGFATRLAEKS---NRSLRRAILSFETCR  236 (248)
Q Consensus       205 -----~--~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~  236 (248)
                           .  .+.++++++++|++..   .+++|.+.+.++...
T Consensus       781 ~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i  822 (852)
T TIGR03346       781 KRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI  822 (852)
T ss_pred             HHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence                 2  3568999999999874   477888888887665

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.73  E-value=1.4e-16  Score=146.10  Aligned_cols=181  Identities=20%  Similarity=0.304  Sum_probs=119.7

Q ss_pred             cccccHHHHHHHHHHhhc--------CCC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           14 QVIVHQDIAQNLKKLVTE--------QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~~--------~~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      .++||+++++.+...+..        +++ .+++|+||+|||||++|+.+|..+.   ..-+.+++..+....       
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~---~~~i~id~se~~~~~-------  528 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEYMERH-------  528 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC---CCcEEeechhhcccc-------
Confidence            468999999999888752        222 3499999999999999999999763   223333333222000       


Q ss_pred             ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------
Q 025758           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------  158 (248)
                           .....++..+...+......+.+.    ..        ...+.|+++||+|.+++..++.|++++++..      
T Consensus       529 -----~~~~LiG~~~gyvg~~~~g~L~~~----v~--------~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g  591 (758)
T PRK11034        529 -----TVSRLIGAPPGYVGFDQGGLLTDA----VI--------KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNG  591 (758)
T ss_pred             -----cHHHHcCCCCCcccccccchHHHH----HH--------hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCC
Confidence                 011112222211111111112221    11        2245799999999999999999999998642      


Q ss_pred             -----CCeeEEEEecCC-------------------------CcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH---
Q 025758          159 -----ASCRLILCCNSS-------------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK---  204 (248)
Q Consensus       159 -----~~~~~Il~t~~~-------------------------~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~---  204 (248)
                           .++.||++||..                         ..+.|.+..|+ .++.|++++.+++.+|+...+.+   
T Consensus       592 ~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~  671 (758)
T PRK11034        592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQA  671 (758)
T ss_pred             ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence                 345688888832                         12557888888 58999999999999998876542   


Q ss_pred             ----cC--CCCCHHHHHHHHHHc
Q 025758          205 ----EG--LQLPSGFATRLAEKS  221 (248)
Q Consensus       205 ----~~--~~~~~~~~~~l~~~~  221 (248)
                          .+  +.++++++++|++..
T Consensus       672 ~l~~~~i~l~~~~~~~~~l~~~~  694 (758)
T PRK11034        672 QLDQKGVSLEVSQEARDWLAEKG  694 (758)
T ss_pred             HHHHCCCCceECHHHHHHHHHhC
Confidence                24  458899999999765

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.73  E-value=1.8e-16  Score=146.43  Aligned_cols=197  Identities=20%  Similarity=0.275  Sum_probs=127.5

Q ss_pred             ccccccHHHHHHHHHHhhc--------CCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758           13 DQVIVHQDIAQNLKKLVTE--------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~--------~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      +.++||+++++.+...+..        +++.+ ++|+||+|||||++|+++|..+.+   .-+.+++..+....      
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d~se~~~~~------  524 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFDMSEYMEKH------  524 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEeCchhhhcc------
Confidence            3468999999988887652        22333 899999999999999999997632   22333332221000      


Q ss_pred             cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----  158 (248)
                            .....++-.+...+......+.+    ...        ...+.|++|||++.++++.++.|++++++..     
T Consensus       525 ------~~~~lig~~~gyvg~~~~~~l~~----~~~--------~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~  586 (731)
T TIGR02639       525 ------TVSRLIGAPPGYVGFEQGGLLTE----AVR--------KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNN  586 (731)
T ss_pred             ------cHHHHhcCCCCCcccchhhHHHH----HHH--------hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCC
Confidence                  00011111111112211111222    222        2245799999999999999999999998641     


Q ss_pred             ------CCeeEEEEecCCC-------------------------cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH--
Q 025758          159 ------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK--  204 (248)
Q Consensus       159 ------~~~~~Il~t~~~~-------------------------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~--  204 (248)
                            .++.||++||...                         .+.|.+.+|+ .++.|.+++.+++.+++...+.+  
T Consensus       587 g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~  666 (731)
T TIGR02639       587 GRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELS  666 (731)
T ss_pred             CcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence                  2455888876531                         2566788898 68999999999999999988763  


Q ss_pred             -----c--CCCCCHHHHHHHHHHc-c--ccHHHHHHHHHHHh
Q 025758          205 -----E--GLQLPSGFATRLAEKS-N--RSLRRAILSFETCR  236 (248)
Q Consensus       205 -----~--~~~~~~~~~~~l~~~~-~--g~~r~~~~~l~~~~  236 (248)
                           .  .+.++++++++|++.. +  -.+|.+-+.++...
T Consensus       667 ~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~  708 (731)
T TIGR02639       667 KQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEI  708 (731)
T ss_pred             HHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHh
Confidence                 2  3568899999999864 1  23555555554433

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.73  E-value=1.5e-17  Score=126.11  Aligned_cols=155  Identities=17%  Similarity=0.247  Sum_probs=122.8

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (248)
                      .+++.++..++.|.+.+  +.||||+||||+.|++|. +.-|++|++.++|.+.....           ..+...+++..
T Consensus        16 ~AvrdVSF~ae~Gei~G--lLG~NGAGKTT~LRmiat-lL~P~~G~v~idg~d~~~~p-----------~~vrr~IGVl~   81 (245)
T COG4555          16 QAVRDVSFEAEEGEITG--LLGENGAGKTTLLRMIAT-LLIPDSGKVTIDGVDTVRDP-----------SFVRRKIGVLF   81 (245)
T ss_pred             hhhhheeEEeccceEEE--EEcCCCCCchhHHHHHHH-hccCCCceEEEeecccccCh-----------HHHhhhcceec
Confidence            36777777888888777  999999999999999998 78999999999996544111           12234578888


Q ss_pred             CCcCcchhHHHHHHHHHHHhcCCCcCCC---------------------------------------CCCeeEEEEeCC-
Q 025758          100 SDAGFQDRYVVQEVIKEMAKNRPIDTKG---------------------------------------KRGFKVLVLNEV-  139 (248)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~viiiDE~-  139 (248)
                      ...+.+...++++.+.+++.....+-..                                       ..+|+++++||| 
T Consensus        82 ~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~  161 (245)
T COG4555          82 GERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT  161 (245)
T ss_pred             CCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence            7888899999999988877654321110                                       458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecC
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS  188 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~  188 (248)
                      .++|-.....|.+.+.......+.|++|++.-+-.+++++|+.+++-..
T Consensus       162 sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Ge  210 (245)
T COG4555         162 SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGE  210 (245)
T ss_pred             CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCc
Confidence            8999999999999999887778888888888888889999997766543

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.72  E-value=2.9e-16  Score=134.41  Aligned_cols=195  Identities=18%  Similarity=0.258  Sum_probs=122.4

Q ss_pred             cCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758            6 KYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (248)
Q Consensus         6 ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~   72 (248)
                      +....+++++.|.+..++.+..++..             ....+++|+||||||||++|+++|+.+..+-   +.+.+. 
T Consensus       115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~---~~v~~~-  190 (364)
T TIGR01242       115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVVGS-  190 (364)
T ss_pred             cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE---EecchH-
Confidence            45567889999999999988877631             1133499999999999999999998652210   111000 


Q ss_pred             eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------
Q 025758           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------  143 (248)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------  143 (248)
                                             .+.....+ .......+.+....         ...+.||+|||+|.+.         
T Consensus       191 -----------------------~l~~~~~g-~~~~~i~~~f~~a~---------~~~p~il~iDEiD~l~~~~~~~~~~  237 (364)
T TIGR01242       191 -----------------------ELVRKYIG-EGARLVREIFELAK---------EKAPSIIFIDEIDAIAAKRTDSGTS  237 (364)
T ss_pred             -----------------------HHHHHhhh-HHHHHHHHHHHHHH---------hcCCcEEEhhhhhhhccccccCCCC
Confidence                                   00000000 01111233333222         2356799999998772         


Q ss_pred             --HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758          144 --REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF  213 (248)
Q Consensus       144 --~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~  213 (248)
                        +..+..+..++.+.     ..+..+|++||.+..+.+++++  |+ ..+.|+.|+.++..+++...+.+..+.- +-.
T Consensus       238 ~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~  316 (364)
T TIGR01242       238 GDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD  316 (364)
T ss_pred             ccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC
Confidence              33455566666443     2356799999999999999975  55 5799999999999999988775544331 123


Q ss_pred             HHHHHHHccc-cHHHHHHHHHHHhhh
Q 025758          214 ATRLAEKSNR-SLRRAILSFETCRVQ  238 (248)
Q Consensus       214 ~~~l~~~~~g-~~r~~~~~l~~~~~~  238 (248)
                      +..++..+.| +.+++.+++..+...
T Consensus       317 ~~~la~~t~g~sg~dl~~l~~~A~~~  342 (364)
T TIGR01242       317 LEAIAKMTEGASGADLKAICTEAGMF  342 (364)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            6667766654 344555555555443

Many proteins may score above the trusted cutoff because an internal

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.4e-16  Score=139.35  Aligned_cols=191  Identities=19%  Similarity=0.248  Sum_probs=133.3

Q ss_pred             CCCCCcccccccHHHHHHHHHHhh-----------cC--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758            7 YRPKTLDQVIVHQDIAQNLKKLVT-----------EQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus         7 y~p~~~~~lig~~~~~~~l~~~~~-----------~~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      ....+|+|+=|+++++..|++.+.           =|  +..++||+||||||||++|+++|.+..+   .        |
T Consensus       428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~---n--------F  496 (693)
T KOG0730|consen  428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM---N--------F  496 (693)
T ss_pred             CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC---C--------e
Confidence            456789999999999999998764           12  2335999999999999999999986411   0        0


Q ss_pred             eeccCCcccccceeeecccceeeeCCCCc---Cc-chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH----
Q 025758           74 KIDAGSRNIDLELTTLSSANHVELSPSDA---GF-QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----  145 (248)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----  145 (248)
                                           +.+..+..   -+ .....+++.++....         ..|.|+++||+|.+..+    
T Consensus       497 ---------------------lsvkgpEL~sk~vGeSEr~ir~iF~kAR~---------~aP~IiFfDEiDsi~~~R~g~  546 (693)
T KOG0730|consen  497 ---------------------LSVKGPELFSKYVGESERAIREVFRKARQ---------VAPCIIFFDEIDALAGSRGGS  546 (693)
T ss_pred             ---------------------eeccCHHHHHHhcCchHHHHHHHHHHHhh---------cCCeEEehhhHHhHhhccCCC
Confidence                                 11111111   00 112235555665543         34579999999987432    


Q ss_pred             -------HHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH-
Q 025758          146 -------AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-  212 (248)
Q Consensus       146 -------~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~-  212 (248)
                             ..+.|+.-|+..  .+++.+|-.||.++.+.+++.+  |+ ..|++++|+.+...+|++..+.+-  .++++ 
T Consensus       547 ~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm--p~~~~v  624 (693)
T KOG0730|consen  547 SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM--PFSEDV  624 (693)
T ss_pred             ccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC--CCCccc
Confidence                   234455555543  3456677889999999999999  77 789999999999999999876554  44455 


Q ss_pred             HHHHHHHHccc-cHHHHHHHHHHHhhhcc
Q 025758          213 FATRLAEKSNR-SLRRAILSFETCRVQQL  240 (248)
Q Consensus       213 ~~~~l~~~~~g-~~r~~~~~l~~~~~~~~  240 (248)
                      .++.|++.++| +.+++-++++.++..+-
T Consensus       625 dl~~La~~T~g~SGAel~~lCq~A~~~a~  653 (693)
T KOG0730|consen  625 DLEELAQATEGYSGAEIVAVCQEAALLAL  653 (693)
T ss_pred             cHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence            58888887765 67888888888775543

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.71  E-value=4e-16  Score=136.65  Aligned_cols=184  Identities=16%  Similarity=0.258  Sum_probs=115.4

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhc-----------C--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~-----------~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~   69 (248)
                      ..+++.+.+|+++.|.+..++.+...+.-           |  ...+++|+||||||||++|+++|..+..+.....  .
T Consensus       172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~--~  249 (512)
T TIGR03689       172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET--G  249 (512)
T ss_pred             eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc--C
Confidence            35778899999999999999888876531           1  2234999999999999999999997743211100  0


Q ss_pred             ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH----
Q 025758           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----  145 (248)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----  145 (248)
                      ...+            +........+   ....+ .....++..+........     .+.+.|++|||+|.+...    
T Consensus       250 ~~~~------------fl~v~~~eLl---~kyvG-ete~~ir~iF~~Ar~~a~-----~g~p~IIfIDEiD~L~~~R~~~  308 (512)
T TIGR03689       250 DKSY------------FLNIKGPELL---NKYVG-ETERQIRLIFQRAREKAS-----DGRPVIVFFDEMDSIFRTRGSG  308 (512)
T ss_pred             Ccee------------EEeccchhhc---ccccc-hHHHHHHHHHHHHHHHhh-----cCCCceEEEehhhhhhcccCCC
Confidence            0000            0000000000   00000 011123334443332211     236789999999876321    


Q ss_pred             --------HHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758          146 --------AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (248)
Q Consensus       146 --------~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~  210 (248)
                              ..+.|+..++...  .+..+|.+||++..+.+++.+  |+ ..|.|++|+.++..+|+...+.. .+.++
T Consensus       309 ~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~  385 (512)
T TIGR03689       309 VSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLD  385 (512)
T ss_pred             ccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCch
Confidence                    1245666665443  356788899999999999987  77 57999999999999999988764 34443

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]

Probab=99.71  E-value=9.1e-17  Score=147.67  Aligned_cols=202  Identities=20%  Similarity=0.325  Sum_probs=142.8

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcC------------C--CC--eeEEECCCCCCHHHHHHHHHHHHcCCCcc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ------------D--CP--HLLFYGPPGSGKKTLIMALLRQVFGPGAE   64 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~------------~--~~--~ill~Gp~G~GKTtla~~ia~~l~~~~~~   64 (248)
                      +.|+++|+|.+..++.|+......+..|+...            .  ..  .++++||+|+|||+.+.+.|+.+.-.-  
T Consensus       308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v--  385 (871)
T KOG1968|consen  308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKV--  385 (871)
T ss_pred             cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccce--
Confidence            47999999999999999888777888887543            1  11  258999999999999999999762211  


Q ss_pred             cceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH---------HHhcCCCcCCCCCCeeEEE
Q 025758           65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE---------MAKNRPIDTKGKRGFKVLV  135 (248)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~vii  135 (248)
                                                    ++.+++.... . ..+.+.+..         .........+......|||
T Consensus       386 ------------------------------~E~Nas~~RS-k-~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil  433 (871)
T KOG1968|consen  386 ------------------------------VEKNASDVRS-K-KELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLIL  433 (871)
T ss_pred             ------------------------------eecCcccccc-c-cHHHhhhhccccccchhhhhcccccccccccceeEEE
Confidence                                          1222221110 0 000000000         0011111111133455999


Q ss_pred             EeCCCCCCHH---HHHHHHHHHHHhcCCeeEEEEecCCCcc-cHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          136 LNEVDKLSRE---AQHSLRRTMEKYSASCRLILCCNSSSKV-TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       136 iDE~d~l~~~---~~~~ll~~le~~~~~~~~Il~t~~~~~~-~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                      +||+|.|...   ....+-.+++  ....++|+++|+.... ..++.+-|..++|..|+.+.+...+..++..+++.+++
T Consensus       434 ~devD~~~~~dRg~v~~l~~l~~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~  511 (871)
T KOG1968|consen  434 MDEVDGMFGEDRGGVSKLSSLCK--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISD  511 (871)
T ss_pred             EeccccccchhhhhHHHHHHHHH--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCc
Confidence            9999988763   3334444555  2346799999998744 44666667999999999999999999999999999999


Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          212 GFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       212 ~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      .+++.+++.++||+|+.++.|+.|...
T Consensus       512 ~~l~~~s~~~~~DiR~~i~~lq~~~~~  538 (871)
T KOG1968|consen  512 DVLEEISKLSGGDIRQIIMQLQFWSLS  538 (871)
T ss_pred             HHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence            999999999999999999999999654

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=99.71  E-value=7.2e-16  Score=123.29  Aligned_cols=107  Identities=28%  Similarity=0.304  Sum_probs=93.9

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC-------------CcccHHHhhhhheeeecCCCHHHHHH
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS-------------SKVTEAIRSRCLNIRINSPTEEQIVK  196 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~-------------~~~~~~l~sR~~~i~~~~~~~~~~~~  196 (248)
                      -|.|+||||+++||-++...|.+.+|.+.. ..+||.||.-             ..+++++.+|..+|.-.+++.+++++
T Consensus       296 vPGVLFIDEVhMLDiEcFTyL~kalES~ia-PivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~  374 (456)
T KOG1942|consen  296 VPGVLFIDEVHMLDIECFTYLHKALESPIA-PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQ  374 (456)
T ss_pred             cCcceEeeehhhhhhHHHHHHHHHhcCCCC-ceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHH
Confidence            578999999999999999999999997643 5678887754             46999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHc-cccHHHHHHHHHHHhh
Q 025758          197 VLEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRV  237 (248)
Q Consensus       197 il~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~  237 (248)
                      |+..++.-|++.++++.+..++... ..++|.++.+|.-+..
T Consensus       375 Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~  416 (456)
T KOG1942|consen  375 IIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASI  416 (456)
T ss_pred             HHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHH
Confidence            9999999999999999999999765 4679999998874443

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.71  E-value=1.9e-16  Score=146.06  Aligned_cols=193  Identities=16%  Similarity=0.204  Sum_probs=124.1

Q ss_pred             cccccHHHHHHHHHHhhc------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758           14 QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~~------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      +++|.+.+++.+..|+..      .+.+.++|+||||+||||+++.+|+.+. .....+..++..-.            .
T Consensus       323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~-~~~~~i~~~~~~d~------------~  389 (784)
T PRK10787        323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG-RKYVRMALGGVRDE------------A  389 (784)
T ss_pred             hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEcCCCCCH------------H
Confidence            368999999988877642      3345599999999999999999998653 23222222221000            0


Q ss_pred             eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH----HHHHHHHHHHh------
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKY------  157 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~----~~~ll~~le~~------  157 (248)
                      .+. .....+.....+        ..+..+...       .....|++|||+|.+.+..    ..+|+.+++.-      
T Consensus       390 ~i~-g~~~~~~g~~~G--------~~~~~l~~~-------~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~  453 (784)
T PRK10787        390 EIR-GHRRTYIGSMPG--------KLIQKMAKV-------GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFS  453 (784)
T ss_pred             Hhc-cchhccCCCCCc--------HHHHHHHhc-------CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEe
Confidence            000 000011111111        112222221       1134599999999998654    48899998741      


Q ss_pred             ---------cCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHHHH
Q 025758          158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----------EGLQLPSGFATRLA  218 (248)
Q Consensus       158 ---------~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----------~~~~~~~~~~~~l~  218 (248)
                               -.+..||+|+|.. .+.++|++||.+|.|.+|+.++...|+.+.+..          ..+.++++++..|+
T Consensus       454 d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii  532 (784)
T PRK10787        454 DHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGII  532 (784)
T ss_pred             cccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHH
Confidence                     1445677777665 699999999999999999999999998887742          13568899999999


Q ss_pred             HHccc--cHHHHHHHHHHHh
Q 025758          219 EKSNR--SLRRAILSFETCR  236 (248)
Q Consensus       219 ~~~~g--~~r~~~~~l~~~~  236 (248)
                      +.+..  .+|.+...++..+
T Consensus       533 ~~yt~e~GaR~LeR~I~~i~  552 (784)
T PRK10787        533 RYYTREAGVRSLEREISKLC  552 (784)
T ss_pred             HhCCcccCCcHHHHHHHHHH
Confidence            86642  2555555555544

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.70  E-value=4e-16  Score=144.52  Aligned_cols=190  Identities=17%  Similarity=0.233  Sum_probs=122.8

Q ss_pred             CCCcccccccHHHHHHHHHHhh------------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVT------------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~------------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~   75 (248)
                      ..+|+++.|++.+++.|...+.            .-+.+ +++|+||||||||++|+++|.++.+   ..+.+.+..   
T Consensus       449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~---~fi~v~~~~---  522 (733)
T TIGR01243       449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA---NFIAVRGPE---  522 (733)
T ss_pred             ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CEEEEehHH---
Confidence            4689999999999998887663            11233 3999999999999999999986521   111111100   


Q ss_pred             ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------
Q 025758           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------  144 (248)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------  144 (248)
                                           +.....+. ....+++.+.....         ..+.|++|||+|.+.+           
T Consensus       523 ---------------------l~~~~vGe-se~~i~~~f~~A~~---------~~p~iifiDEid~l~~~r~~~~~~~~~  571 (733)
T TIGR01243       523 ---------------------ILSKWVGE-SEKAIREIFRKARQ---------AAPAIIFFDEIDAIAPARGARFDTSVT  571 (733)
T ss_pred             ---------------------HhhcccCc-HHHHHHHHHHHHHh---------cCCEEEEEEChhhhhccCCCCCCccHH
Confidence                                 00000111 12234555554432         3567999999987732           


Q ss_pred             -HHHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 025758          145 -EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (248)
Q Consensus       145 -~~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~  218 (248)
                       ...+.|+..++..  ..+..+|.+||++..+.+++..  |+ ..+.++.|+.++..++++....+..+. ++..+..++
T Consensus       572 ~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la  650 (733)
T TIGR01243       572 DRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELA  650 (733)
T ss_pred             HHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHH
Confidence             2345567777643  3456788899999999999985  88 689999999999999998665443332 223477788


Q ss_pred             HHccc-cHHHHHHHHHHHh
Q 025758          219 EKSNR-SLRRAILSFETCR  236 (248)
Q Consensus       219 ~~~~g-~~r~~~~~l~~~~  236 (248)
                      ..+.| +..++.++++.+.
T Consensus       651 ~~t~g~sgadi~~~~~~A~  669 (733)
T TIGR01243       651 EMTEGYTGADIEAVCREAA  669 (733)
T ss_pred             HHcCCCCHHHHHHHHHHHH
Confidence            77654 3444444444444

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.8e-15  Score=135.80  Aligned_cols=203  Identities=18%  Similarity=0.260  Sum_probs=139.5

Q ss_pred             CCCCcccccccHHHHHHHHHHhh-----------cCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~-----------~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~   75 (248)
                      .+.+|+|+.|.++++..|...+.           .-++|. +||+||||||||.||+++|++-           +.+|..
T Consensus       306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----------gVPF~s  374 (774)
T KOG0731|consen  306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----------GVPFFS  374 (774)
T ss_pred             CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----------CCceee
Confidence            45789999999999999987763           234566 9999999999999999999864           222221


Q ss_pred             ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------
Q 025758           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------  144 (248)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------  144 (248)
                      .+++             ++++..-   + .....+++++....         .+.|.+++|||+|....           
T Consensus       375 vSGS-------------EFvE~~~---g-~~asrvr~lf~~ar---------~~aP~iifideida~~~~r~G~~~~~~~  428 (774)
T KOG0731|consen  375 VSGS-------------EFVEMFV---G-VGASRVRDLFPLAR---------KNAPSIIFIDEIDAVGRKRGGKGTGGGQ  428 (774)
T ss_pred             echH-------------HHHHHhc---c-cchHHHHHHHHHhh---------ccCCeEEEecccccccccccccccCCCC
Confidence            1211             1111111   0 01122555555443         34677999999987642           


Q ss_pred             -HHHHHHHHHH---HHh--cCCeeEEEEecCCCcccHHHhhh--h-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758          145 -EAQHSLRRTM---EKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (248)
Q Consensus       145 -~~~~~ll~~l---e~~--~~~~~~Il~t~~~~~~~~~l~sR--~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~  215 (248)
                       +....|.+++   +..  ..+..++..||.++-+.++++.-  + ..|.++.|+.....+|++.++.+.++..++..+.
T Consensus       429 ~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~  508 (774)
T KOG0731|consen  429 DEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLS  508 (774)
T ss_pred             hHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHH
Confidence             2233444444   333  33456777788988999999864  4 6899999999999999999988888776777788


Q ss_pred             HHHHHcccc-HHHHHHHHHHHhhhcccccCCCC
Q 025758          216 RLAEKSNRS-LRRAILSFETCRVQQLRFTMPSV  247 (248)
Q Consensus       216 ~l~~~~~g~-~r~~~~~l~~~~~~~~~~~~~~v  247 (248)
                      .++..+.|. ...+.|+++.+...+-+.+.++|
T Consensus       509 ~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i  541 (774)
T KOG0731|consen  509 KLASLTPGFSGADLANLCNEAALLAARKGLREI  541 (774)
T ss_pred             HHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence            888888775 56667777777776665555444

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.68  E-value=2.5e-17  Score=128.44  Aligned_cols=151  Identities=17%  Similarity=0.272  Sum_probs=122.1

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      +|-..++..++..+++|++-+  |.||||+||||+.|+|.+ +..++.|.++.+|.+.....              .+.+
T Consensus        12 Fg~k~av~~isf~v~~G~i~G--llG~NGAGKTTtfRmILg-lle~~~G~I~~~g~~~~~~~--------------~~rI   74 (300)
T COG4152          12 FGDKKAVDNISFEVPPGEIFG--LLGPNGAGKTTTFRMILG-LLEPTEGEITWNGGPLSQEI--------------KNRI   74 (300)
T ss_pred             cCceeeecceeeeecCCeEEE--eecCCCCCccchHHHHhc-cCCccCceEEEcCcchhhhh--------------hhhc
Confidence            566667778888888887767  999999999999999998 77999999999997665222              2239


Q ss_pred             eeCCCCcCcchhHHHHHHHHHHHhcCCC---------------------------cCC-C-----------CCCeeEEEE
Q 025758           96 ELSPSDAGFQDRYVVQEVIKEMAKNRPI---------------------------DTK-G-----------KRGFKVLVL  136 (248)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~-~-----------~~~~~viii  136 (248)
                      +|.|+..+.++..++.+.+.+++.....                           .+| +           ...|.++||
T Consensus        75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL  154 (300)
T COG4152          75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL  154 (300)
T ss_pred             ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence            9999999999999999999888765432                           111 0           448999999


Q ss_pred             eCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758          137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       137 DE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ||| .+|||-....|.+.+-+....+..|++|+|..+-.+.|++|...
T Consensus       155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llm  202 (300)
T COG4152         155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLM  202 (300)
T ss_pred             cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhe
Confidence            999 99999999999999988887777777777777777788888643

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.68  E-value=1.2e-15  Score=143.08  Aligned_cols=205  Identities=19%  Similarity=0.299  Sum_probs=139.5

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      .++++.+|..++.++|+++.++.+...+..+...+++|+||||+|||++++.++..+.. ......+.+..         
T Consensus       162 ~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~---------  231 (852)
T TIGR03346       162 DLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKR---------  231 (852)
T ss_pred             hHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCe---------
Confidence            36788999999999999999999988887777777999999999999999999987622 11100000100         


Q ss_pred             cccceeeecccceeeeCCCC--cCcch----hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--------HHH
Q 025758           82 IDLELTTLSSANHVELSPSD--AGFQD----RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQ  147 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~  147 (248)
                                  .+.+....  .+...    ...+...++.+..        ...+.|+||||++.+..        ++.
T Consensus       232 ------------~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~--------~~~~~ILfIDEih~l~~~g~~~~~~d~~  291 (852)
T TIGR03346       232 ------------LLALDMGALIAGAKYRGEFEERLKAVLNEVTK--------SEGQIILFIDELHTLVGAGKAEGAMDAG  291 (852)
T ss_pred             ------------EEEeeHHHHhhcchhhhhHHHHHHHHHHHHHh--------cCCCeEEEeccHHHhhcCCCCcchhHHH
Confidence                        01111100  01111    1123344444432        12567999999987742        233


Q ss_pred             HHHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHH
Q 025758          148 HSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLA  218 (248)
Q Consensus       148 ~~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~  218 (248)
                      +.|...++  .....+|.+|+..+     ...+++.+||..+.++.|+.++...++.....+    .++.++++.+..++
T Consensus       292 ~~Lk~~l~--~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~  369 (852)
T TIGR03346       292 NMLKPALA--RGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAA  369 (852)
T ss_pred             HHhchhhh--cCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence            44444443  23456777777653     468999999999999999999999999877655    35668888888888


Q ss_pred             HHcc---cc---HHHHHHHHHHHhhh
Q 025758          219 EKSN---RS---LRRAILSFETCRVQ  238 (248)
Q Consensus       219 ~~~~---g~---~r~~~~~l~~~~~~  238 (248)
                      ..+.   .+   +..|+++|+.++..
T Consensus       370 ~ls~~yi~~r~lPdkAidlld~a~a~  395 (852)
T TIGR03346       370 TLSHRYITDRFLPDKAIDLIDEAAAR  395 (852)
T ss_pred             HhccccccccCCchHHHHHHHHHHHH
Confidence            6653   33   88999999998854

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.67  E-value=1.1e-14  Score=114.94  Aligned_cols=192  Identities=20%  Similarity=0.294  Sum_probs=130.0

Q ss_pred             cccCCCCCcccccccHHHHHHHHH----HhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            4 VDKYRPKTLDQVIVHQDIAQNLKK----LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~~~~~l~~----~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      +....|..+++|+|-+..++.|..    .+......|+||+|+.|||||++++++...+..+.-.-              
T Consensus        18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRl--------------   83 (249)
T PF05673_consen   18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRL--------------   83 (249)
T ss_pred             cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceE--------------
Confidence            456789999999997776666654    44444445599999999999999999998764333111              


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH-HHHHHHHHH---
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QHSLRRTME---  155 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-~~~ll~~le---  155 (248)
                                     +++..++..     .+.++++.+..        ...+-||++|+...=..+. -..|..+||   
T Consensus        84 ---------------Iev~k~~L~-----~l~~l~~~l~~--------~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgl  135 (249)
T PF05673_consen   84 ---------------IEVSKEDLG-----DLPELLDLLRD--------RPYKFILFCDDLSFEEGDTEYKALKSVLEGGL  135 (249)
T ss_pred             ---------------EEECHHHhc-----cHHHHHHHHhc--------CCCCEEEEecCCCCCCCcHHHHHHHHHhcCcc
Confidence                           333332221     13444555443        2256799999985322233 344444554   


Q ss_pred             -HhcCCeeEEEEecCCCcccH-----------------------HHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758          156 -KYSASCRLILCCNSSSKVTE-----------------------AIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (248)
Q Consensus       156 -~~~~~~~~Il~t~~~~~~~~-----------------------~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~  210 (248)
                       ..+.|+.+..|||...-+.+                       +|.+|+ ..|.|.+|+.++..+|+...+.+.++.++
T Consensus       136 e~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~  215 (249)
T PF05673_consen  136 EARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELD  215 (249)
T ss_pred             ccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence             34677778888886532222                       445676 78999999999999999999999999998


Q ss_pred             HHH-----HHHHHHHccccHHHHHHHHHHHhh
Q 025758          211 SGF-----ATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       211 ~~~-----~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      ++.     +.+-..+.+++.|.|-..++.+..
T Consensus       216 ~e~l~~~Al~wa~~rg~RSGRtA~QF~~~l~g  247 (249)
T PF05673_consen  216 EEELRQEALQWALRRGGRSGRTARQFIDDLAG  247 (249)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc
Confidence            544     344445567788988887777653

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.67  E-value=5.7e-15  Score=123.67  Aligned_cols=227  Identities=16%  Similarity=0.198  Sum_probs=126.4

Q ss_pred             CCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec----cCCccc
Q 025758            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID----AGSRNI   82 (248)
Q Consensus         7 y~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~----~~~~~~   82 (248)
                      -.|..|++++||+.+++.+.-.+-.....|++|.|++|+||||+|+++++.+-+....    .+.++...    ++....
T Consensus         2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~----e~~~~~~~~~~~~~~~~~   77 (334)
T PRK13407          2 KKPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAV----EGCPVNSARPEDCPEWAH   77 (334)
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchh----cccccccCcccCCccccc
Confidence            3689999999999999988865543345679999999999999999999954221110    11111100    000000


Q ss_pred             ccceeeecc-cceeeeCC--CCcCcchhHHHHHHHHHHHh-cCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758           83 DLELTTLSS-ANHVELSP--SDAGFQDRYVVQEVIKEMAK-NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~  158 (248)
                      ......... ...+.+..  ......+.......+..-.. ..+ +.-...+..++++||++.+++..++.|+..+++..
T Consensus        78 ~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~-G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~  156 (334)
T PRK13407         78 VSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEP-GLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGE  156 (334)
T ss_pred             ccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecC-CceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCC
Confidence            000000000 00011111  01111111112221111000 111 11123445689999999999999999999998643


Q ss_pred             -----------CCeeEEEEe-cCC-C-cccHHHhhhh-heeeecCCCH-HHHHHHHHHHHHH------------------
Q 025758          159 -----------ASCRLILCC-NSS-S-KVTEAIRSRC-LNIRINSPTE-EQIVKVLEFIAKK------------------  204 (248)
Q Consensus       159 -----------~~~~~Il~t-~~~-~-~~~~~l~sR~-~~i~~~~~~~-~~~~~il~~~~~~------------------  204 (248)
                                 ....|++++ .++ + .+.+++.+|+ ..+.++++.. ++..+++......                  
T Consensus       157 v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~  236 (334)
T PRK13407        157 NVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQL  236 (334)
T ss_pred             eEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCC
Confidence                       112355543 333 2 5888999999 5677777766 6656666543210                  


Q ss_pred             -----------cCCCCCHHHHHHHHHHc---c-ccHHHHHHHHHHHhhh
Q 025758          205 -----------EGLQLPSGFATRLAEKS---N-RSLRRAILSFETCRVQ  238 (248)
Q Consensus       205 -----------~~~~~~~~~~~~l~~~~---~-g~~r~~~~~l~~~~~~  238 (248)
                                 ..+.++++++.++++.+   + .+.|..+.++..+...
T Consensus       237 ~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~  285 (334)
T PRK13407        237 RGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARAL  285 (334)
T ss_pred             HHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence                       24568888888887554   1 3577777666555533

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.66  E-value=1e-16  Score=132.85  Aligned_cols=158  Identities=16%  Similarity=0.232  Sum_probs=115.9

Q ss_pred             Ccccccc-cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758           11 TLDQVIV-HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (248)
Q Consensus        11 ~~~~lig-~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (248)
                      ++..-+| ...+++.+...+++|.+-.  |.||||+||||+.+++++ +..+.+|.+.++|.+.....           .
T Consensus         9 ~l~k~~~~~~~~l~~vs~~i~~Gei~g--llG~NGAGKTTllk~l~g-l~~p~~G~i~i~G~~~~~~~-----------~   74 (293)
T COG1131           9 NLTKKYGGDKTALDGVSFEVEPGEIFG--LLGPNGAGKTTLLKILAG-LLKPTSGEILVLGYDVVKEP-----------A   74 (293)
T ss_pred             ceEEEeCCCCEEEeceeEEEcCCeEEE--EECCCCCCHHHHHHHHhC-CcCCCceEEEEcCEeCccCH-----------H
Confidence            3444466 4677778888887775555  999999999999999998 77889999999996554211           1


Q ss_pred             cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCc---------------------------CCC------------CCC
Q 025758           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID---------------------------TKG------------KRG  130 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~------------~~~  130 (248)
                      .....++|.++....++..++.+.++.++..+...                           +|.            ..+
T Consensus        75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~  154 (293)
T COG1131          75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD  154 (293)
T ss_pred             HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence            11234778887777777777777777665544321                           110            458


Q ss_pred             eeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhhh
Q 025758          131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       131 ~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      |+++|+||| .+||+.....++++|.+..... ..|++|+|.....+.+++|+.
T Consensus       155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~  208 (293)
T COG1131         155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI  208 (293)
T ss_pred             CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence            999999999 8999999999999999987765 566666666666667788874

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=4.3e-15  Score=116.63  Aligned_cols=162  Identities=20%  Similarity=0.310  Sum_probs=112.9

Q ss_pred             CCcccccccHHHHHHHHHHhh-------------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758           10 KTLDQVIVHQDIAQNLKKLVT-------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~-------------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      .+..|+=|.+-.++.++..++             -..+.+++++||||+|||.+++++|.+-   .+..+++.|..|.  
T Consensus       152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~firvvgsefv--  226 (408)
T KOG0727|consen  152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV--  226 (408)
T ss_pred             ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH--
Confidence            456677677766777766653             1223349999999999999999999743   3334444443332  


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC-----------CHH
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-----------SRE  145 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-----------~~~  145 (248)
                                        -.|..+++     ..+++.++...         ++.|.+|+|||+|.+           +.+
T Consensus       227 ------------------qkylgegp-----rmvrdvfrlak---------enapsiifideidaiatkrfdaqtgadre  274 (408)
T KOG0727|consen  227 ------------------QKYLGEGP-----RMVRDVFRLAK---------ENAPSIIFIDEIDAIATKRFDAQTGADRE  274 (408)
T ss_pred             ------------------HHHhccCc-----HHHHHHHHHHh---------ccCCcEEEeehhhhHhhhhccccccccHH
Confidence                              11222221     13556555333         456789999999875           456


Q ss_pred             HHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCC
Q 025758          146 AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQ  208 (248)
Q Consensus       146 ~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~  208 (248)
                      .+..|+++++..     ..|.++|+.||..+.+.|++..-.   ..|.|+.|+..+.+-++..+..+-++.
T Consensus       275 vqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls  345 (408)
T KOG0727|consen  275 VQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS  345 (408)
T ss_pred             HHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence            778888888753     456899999999999999998765   589999999999888888777665444

>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.65  E-value=1.3e-14  Score=116.52  Aligned_cols=119  Identities=24%  Similarity=0.236  Sum_probs=100.3

Q ss_pred             CCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC------------CcccHHHhhhhheeeecCCCHHHHH
Q 025758          128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS------------SKVTEAIRSRCLNIRINSPTEEQIV  195 (248)
Q Consensus       128 ~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~------------~~~~~~l~sR~~~i~~~~~~~~~~~  195 (248)
                      +--|.|+||||+++|+-++...|.+.+|.-- .+.+|+.||.-            ..++-++.+|..+|.-.||+.+++.
T Consensus       286 eivpGVLFIDEvHMLDIEcFsFlNrAlE~d~-~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~  364 (454)
T KOG2680|consen  286 EIVPGVLFIDEVHMLDIECFSFLNRALENDM-APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIK  364 (454)
T ss_pred             eeccceEEEeeehhhhhHHHHHHHHHhhhcc-CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHH
Confidence            3467899999999999999999999998632 13455556533            4689999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHc-cccHHHHHHHHHHHhhhcccccCCCC
Q 025758          196 KVLEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQLRFTMPSV  247 (248)
Q Consensus       196 ~il~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~~~~~~v  247 (248)
                      +||.-++..|.+.+++++++.+.... ..++|.+++++..+...+.+++.+.|
T Consensus       365 ~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v  417 (454)
T KOG2680|consen  365 KILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVV  417 (454)
T ss_pred             HHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCcee
Confidence            99999999999999999999998775 45799999999988877776666544

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=8.3e-15  Score=121.19  Aligned_cols=174  Identities=23%  Similarity=0.281  Sum_probs=115.6

Q ss_pred             CCCcccccccHHHHHHHHHHhh----------cCCCC--eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVT----------EQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~----------~~~~~--~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      -+.|+|+.|..++++.|+..+-          ..+-|  ++|++||||||||.||+++|.+...           .|   
T Consensus       208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t-----------TF---  273 (491)
T KOG0738|consen  208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT-----------TF---  273 (491)
T ss_pred             CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC-----------eE---
Confidence            3789999999999999998762          22323  4999999999999999999986421           11   


Q ss_pred             cCCcccccceeeecccceeeeCCCCc---CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC----------
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDA---GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----------  143 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----------  143 (248)
                                        +-+..+..   --.+.+.+.+++-.++.++        .|.+|||||||.+-          
T Consensus       274 ------------------FNVSsstltSKwRGeSEKlvRlLFemARfy--------APStIFiDEIDslcs~RG~s~EHE  327 (491)
T KOG0738|consen  274 ------------------FNVSSSTLTSKWRGESEKLVRLLFEMARFY--------APSTIFIDEIDSLCSQRGGSSEHE  327 (491)
T ss_pred             ------------------EEechhhhhhhhccchHHHHHHHHHHHHHh--------CCceeehhhHHHHHhcCCCccchh
Confidence                              11111111   1123344555555566655        45699999999873          


Q ss_pred             --HHHHHHHHHHHHHhcC-----CeeEEEE-ecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758          144 --REAQHSLRRTMEKYSA-----SCRLILC-CNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (248)
Q Consensus       144 --~~~~~~ll~~le~~~~-----~~~~Il~-t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~  214 (248)
                        ....+.||-.++....     .+++||. ||.|=++.++++.|+ ..|.++.|+.+.....++..+..-. ..++--+
T Consensus       328 aSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~-~~~~~~~  406 (491)
T KOG0738|consen  328 ASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVE-LDDPVNL  406 (491)
T ss_pred             HHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcccc-CCCCccH
Confidence              2245667777764321     2356665 556669999999999 5799999999999998887664422 2223336


Q ss_pred             HHHHHHccc
Q 025758          215 TRLAEKSNR  223 (248)
Q Consensus       215 ~~l~~~~~g  223 (248)
                      +.|++.++|
T Consensus       407 ~~lae~~eG  415 (491)
T KOG0738|consen  407 EDLAERSEG  415 (491)
T ss_pred             HHHHHHhcC
Confidence            666655543

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.63  E-value=2.5e-14  Score=120.04  Aligned_cols=227  Identities=14%  Similarity=0.167  Sum_probs=128.0

Q ss_pred             cccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc--c--eeeccCCcccccce-
Q 025758           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK--T--WKIDAGSRNIDLEL-   86 (248)
Q Consensus        12 ~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~-   86 (248)
                      |..++||++++..|.-.+-.+...+++|.|++|+||||+++++++.+ .+..+.+.....  +  -...|..|+....+ 
T Consensus         3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   81 (337)
T TIGR02030         3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL-PEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ   81 (337)
T ss_pred             ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh-cccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence            67899999999988776666667789999999999999999999843 332222211000  0  00001111110000 


Q ss_pred             ee---ec-ccceeeeCC--CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc--
Q 025758           87 TT---LS-SANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--  158 (248)
Q Consensus        87 ~~---~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~--  158 (248)
                      .+   .. ....+.+..  ......+.......+..-......++-.+.+..+++|||++.|++..+..|+..+++..  
T Consensus        82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~  161 (337)
T TIGR02030        82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNV  161 (337)
T ss_pred             cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeE
Confidence            00   00 001112111  01111111122222211111111122224456799999999999999999999997642  


Q ss_pred             ---------CCeeEEEEe-cCCC--cccHHHhhhh-heeeecCCCH-HHHHHHHHHHHH---------------------
Q 025758          159 ---------ASCRLILCC-NSSS--KVTEAIRSRC-LNIRINSPTE-EQIVKVLEFIAK---------------------  203 (248)
Q Consensus       159 ---------~~~~~Il~t-~~~~--~~~~~l~sR~-~~i~~~~~~~-~~~~~il~~~~~---------------------  203 (248)
                               ....|++++ .++.  .+.+++.+|+ ..+.+++|+. ++..+++.....                     
T Consensus       162 v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~  241 (337)
T TIGR02030       162 VEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQA  241 (337)
T ss_pred             EEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHH
Confidence                     112344443 3332  5888999999 5678877775 666666655211                     


Q ss_pred             --------HcCCCCCHHHHHHHHHHc---cc-cHHHHHHHHHHHhhhc
Q 025758          204 --------KEGLQLPSGFATRLAEKS---NR-SLRRAILSFETCRVQQ  239 (248)
Q Consensus       204 --------~~~~~~~~~~~~~l~~~~---~g-~~r~~~~~l~~~~~~~  239 (248)
                              -..+.+++++++++++.+   +. +.|..+.++..+...+
T Consensus       242 ~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~A  289 (337)
T TIGR02030       242 KIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALA  289 (337)
T ss_pred             HHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence                    024568888888887544   22 4788887776665443

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.63  E-value=2.1e-14  Score=120.50  Aligned_cols=229  Identities=17%  Similarity=0.221  Sum_probs=133.8

Q ss_pred             ccCCCC-CcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758            5 DKYRPK-TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus         5 ~ky~p~-~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      ++-+|. .|.+++||++++..|...+.+.++.+++|.|++||||||+|+.+++.+.+..  .+.  +.+|. ..+....+
T Consensus         8 ~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~--~~~--~~pf~-~~p~~p~~   82 (350)
T CHL00081          8 KKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIE--VVK--DDPFN-SHPSDPEL   82 (350)
T ss_pred             hccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcC--ccC--CCCCC-CCCCChhh
Confidence            344444 7999999999999999998888888899999999999999999998553322  111  11111 01110000


Q ss_pred             c--ceee-ec----------ccceeeeCC--CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHH
Q 025758           84 L--ELTT-LS----------SANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQH  148 (248)
Q Consensus        84 ~--~~~~-~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~  148 (248)
                      .  .+.. ..          ....+.+..  ......+..+....+..-......++-...+..++++||++.+++..+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~  162 (350)
T CHL00081         83 MSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD  162 (350)
T ss_pred             hchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHH
Confidence            0  0000 00          000001100  0111111111222221111110112223456679999999999999999


Q ss_pred             HHHHHHHHhc-----------CCeeEEEEec-CCC--cccHHHhhhh-heeeecCCC-HHHHHHHHHHHHH---------
Q 025758          149 SLRRTMEKYS-----------ASCRLILCCN-SSS--KVTEAIRSRC-LNIRINSPT-EEQIVKVLEFIAK---------  203 (248)
Q Consensus       149 ~ll~~le~~~-----------~~~~~Il~t~-~~~--~~~~~l~sR~-~~i~~~~~~-~~~~~~il~~~~~---------  203 (248)
                      .|++.+++..           ....|+++++ ++.  .+.+++.+|+ ..+.+.+|+ .+...+++.+...         
T Consensus       163 ~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~  242 (350)
T CHL00081        163 ILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFR  242 (350)
T ss_pred             HHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhh
Confidence            9999998631           1123555543 332  5899999999 578888887 4666666655321         


Q ss_pred             -----------------H---cCCCCCHHHHHHHHHHcc----ccHHHHHHHHHHHhhh
Q 025758          204 -----------------K---EGLQLPSGFATRLAEKSN----RSLRRAILSFETCRVQ  238 (248)
Q Consensus       204 -----------------~---~~~~~~~~~~~~l~~~~~----g~~r~~~~~l~~~~~~  238 (248)
                                       +   ..+.++++++.++++.+.    .+.|..+-+++.+...
T Consensus       243 ~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~  301 (350)
T CHL00081        243 EKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKAL  301 (350)
T ss_pred             hhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHH
Confidence                             0   256688888888876542    2578777777665543

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.63  E-value=9.8e-14  Score=114.06  Aligned_cols=204  Identities=17%  Similarity=0.194  Sum_probs=118.0

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee-cccceee
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL-SSANHVE   96 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   96 (248)
                      +..+...+...++.+ .+.++++||+|+||||+++.++..+.+..   +.....   ..+....    .... ......+
T Consensus        28 ~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~---~~~~~~---~~~~~~~----~~~l~~i~~~lG   96 (269)
T TIGR03015        28 HKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQER---VVAAKL---VNTRVDA----EDLLRMVAADFG   96 (269)
T ss_pred             HHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCC---eEEeee---eCCCCCH----HHHHHHHHHHcC
Confidence            445555666555432 23488999999999999999998664221   111000   0000000    0000 0011112


Q ss_pred             eCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC---eeEEEEecCCC--
Q 025758           97 LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS---CRLILCCNSSS--  171 (248)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~---~~~Il~t~~~~--  171 (248)
                      +...  +.............+....     ..+.+.+++|||++.+++...+.+..+.+....+   ..++++ ..+.  
T Consensus        97 ~~~~--~~~~~~~~~~l~~~l~~~~-----~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~-g~~~~~  168 (269)
T TIGR03015        97 LETE--GRDKAALLRELEDFLIEQF-----AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLV-GQPEFR  168 (269)
T ss_pred             CCCC--CCCHHHHHHHHHHHHHHHH-----hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEc-CCHHHH
Confidence            2211  1111111112111111110     1335679999999999988766665444322111   234444 3332  


Q ss_pred             -----cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758          172 -----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG----LQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       172 -----~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  240 (248)
                           .....+.+|+ ..+.+++++.+++.+++..++...+    ..++++.++.|.+.++|++|.+..+++.+...+.
T Consensus       169 ~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~  247 (269)
T TIGR03015       169 ETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAF  247 (269)
T ss_pred             HHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHH
Confidence                 1234677785 5789999999999999999887654    3688999999999999999998888777755443

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.63  E-value=4.4e-15  Score=138.87  Aligned_cols=203  Identities=16%  Similarity=0.266  Sum_probs=134.0

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (248)
                      .+++.+|..+++++|+++.++.+...+.....++++|+||||+|||++++.+|..+.... -...+.+.           
T Consensus       168 l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~-vp~~l~~~-----------  235 (857)
T PRK10865        168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGE-VPEGLKGR-----------  235 (857)
T ss_pred             HHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCC-CchhhCCC-----------
Confidence            467889999999999999988888888777777899999999999999999999763211 00000000           


Q ss_pred             ccceeeecccceeeeCCCC--cCcchh----HHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH--------HHH
Q 025758           83 DLELTTLSSANHVELSPSD--AGFQDR----YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------AQH  148 (248)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--------~~~  148 (248)
                                ..+.+....  .+....    ..+...++.+..        ...+.|+||||++.+...        +.+
T Consensus       236 ----------~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~--------~~~~~ILfIDEih~l~~~~~~~~~~d~~~  297 (857)
T PRK10865        236 ----------RVLALDMGALVAGAKYRGEFEERLKGVLNDLAK--------QEGNVILFIDELHTMVGAGKADGAMDAGN  297 (857)
T ss_pred             ----------EEEEEehhhhhhccchhhhhHHHHHHHHHHHHH--------cCCCeEEEEecHHHhccCCCCccchhHHH
Confidence                      001111111  111111    123444444433        125679999999988532        456


Q ss_pred             HHHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 025758          149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE  219 (248)
Q Consensus       149 ~ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~  219 (248)
                      .|...+++  ....+|.+|+..+     ...+++.+||..|.++.|+.++...++.....+    .++.++++++...+.
T Consensus       298 ~lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~  375 (857)
T PRK10865        298 MLKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAAT  375 (857)
T ss_pred             Hhcchhhc--CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHH
Confidence            66666543  3456777777665     478999999999999999999999999776654    256677887777654


Q ss_pred             Hcc------ccHHHHHHHHHHHhh
Q 025758          220 KSN------RSLRRAILSFETCRV  237 (248)
Q Consensus       220 ~~~------g~~r~~~~~l~~~~~  237 (248)
                      .+.      .-+..|+.+++.++.
T Consensus       376 ls~ry~~~~~~pdkAi~LiD~aaa  399 (857)
T PRK10865        376 LSHRYIADRQLPDKAIDLIDEAAS  399 (857)
T ss_pred             HhhccccCCCCChHHHHHHHHHhc
Confidence            431      125566666666654

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=2.7e-14  Score=124.04  Aligned_cols=172  Identities=19%  Similarity=0.276  Sum_probs=119.0

Q ss_pred             CcccccccHHHHHHHHHHhh----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758           11 TLDQVIVHQDIAQNLKKLVT----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~   78 (248)
                      +|+++=|.+..+..|...+-          -| .+| ++||+||||||||.+|+++|+++.-+-                
T Consensus       188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf----------------  251 (802)
T KOG0733|consen  188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF----------------  251 (802)
T ss_pred             chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce----------------
Confidence            48888888888877766542          12 223 399999999999999999999873211                


Q ss_pred             CcccccceeeecccceeeeCCCC--cCc--chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH--------
Q 025758           79 SRNIDLELTTLSSANHVELSPSD--AGF--QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA--------  146 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~--------  146 (248)
                                      +.+...+  .|.  ...+.+++.++....         ..|.|+||||+|.+.+..        
T Consensus       252 ----------------~~isApeivSGvSGESEkkiRelF~~A~~---------~aPcivFiDeIDAI~pkRe~aqreME  306 (802)
T KOG0733|consen  252 ----------------LSISAPEIVSGVSGESEKKIRELFDQAKS---------NAPCIVFIDEIDAITPKREEAQREME  306 (802)
T ss_pred             ----------------EeecchhhhcccCcccHHHHHHHHHHHhc---------cCCeEEEeecccccccchhhHHHHHH
Confidence                            1111111  111  233457777776553         357799999999987532        


Q ss_pred             ---HHHHHHHHHHhcC------CeeEEEEecCCCcccHHHhhh--h-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758          147 ---QHSLRRTMEKYSA------SCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (248)
Q Consensus       147 ---~~~ll~~le~~~~------~~~~Il~t~~~~~~~~~l~sR--~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~  214 (248)
                         ...|+..|+++..      .+.+|-+||.|+.+.++|+.-  + ..|.+..|+.....+||..++..-.+.. +=.+
T Consensus       307 rRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~  385 (802)
T KOG0733|consen  307 RRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDF  385 (802)
T ss_pred             HHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCH
Confidence               3356777776632      245778899999999999864  4 5799999999999999999987654432 1226


Q ss_pred             HHHHHHcccc
Q 025758          215 TRLAEKSNRS  224 (248)
Q Consensus       215 ~~l~~~~~g~  224 (248)
                      ..|++.+.|=
T Consensus       386 ~qlA~lTPGf  395 (802)
T KOG0733|consen  386 KQLAKLTPGF  395 (802)
T ss_pred             HHHHhcCCCc
Confidence            6777776653

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.62  E-value=1.1e-14  Score=133.65  Aligned_cols=198  Identities=15%  Similarity=0.233  Sum_probs=127.7

Q ss_pred             CCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      +--.++.++|.+..++.+.+.+......+++|+||||+|||++|+.++..+........-.+...               
T Consensus       181 ~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~---------------  245 (758)
T PRK11034        181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI---------------  245 (758)
T ss_pred             HcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeE---------------
Confidence            34567788999988888888877766677999999999999999999986533221100000000               


Q ss_pred             eecccceeeeCCCC--cCcch----hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------HHHHHHHHH
Q 025758           88 TLSSANHVELSPSD--AGFQD----RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRR  152 (248)
Q Consensus        88 ~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~ll~  152 (248)
                             +......  .+...    .......++.+..         ..+.|++|||++.+-         .+..+.|..
T Consensus       246 -------~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~---------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp  309 (758)
T PRK11034        246 -------YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ---------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKP  309 (758)
T ss_pred             -------EeccHHHHhcccchhhhHHHHHHHHHHHHHh---------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHH
Confidence                   0110000  01111    1122333333332         245699999998762         122233344


Q ss_pred             HHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccc
Q 025758          153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR  223 (248)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~g  223 (248)
                      .+..  ....+|.+|+..+     ...+++.+||..|.++.|+.++...||..+..+    .++.++++++..++..+.+
T Consensus       310 ~L~~--g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~r  387 (758)
T PRK11034        310 LLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK  387 (758)
T ss_pred             HHhC--CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhc
Confidence            4432  3345666666543     468899999999999999999999999976554    4778999999888765532


Q ss_pred             ------cHHHHHHHHHHHhhh
Q 025758          224 ------SLRRAILSFETCRVQ  238 (248)
Q Consensus       224 ------~~r~~~~~l~~~~~~  238 (248)
                            -+..++.+|+.++..
T Consensus       388 yi~~r~lPdKaidlldea~a~  408 (758)
T PRK11034        388 YINDRHLPDKAIDVIDEAGAR  408 (758)
T ss_pred             cccCccChHHHHHHHHHHHHh
Confidence                  366999999998853

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.61  E-value=1.2e-14  Score=120.87  Aligned_cols=156  Identities=18%  Similarity=0.230  Sum_probs=102.7

Q ss_pred             CCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHH
Q 025758           33 DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ  111 (248)
Q Consensus        33 ~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (248)
                      +.|. ++|+||||+|||.+|+++|.++...   .+.+++-                        ++.....| .+...++
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~---~i~vsa~------------------------eL~sk~vG-EsEk~IR  197 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE---PIVMSAG------------------------ELESENAG-EPGKLIR  197 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC---eEEEEHH------------------------HhhcCcCC-cHHHHHH
Confidence            3444 9999999999999999999987332   1211111                        11111111 1223456


Q ss_pred             HHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH---------H---HHHHHHHHHHh--------------cCCeeEEE
Q 025758          112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE---------A---QHSLRRTMEKY--------------SASCRLIL  165 (248)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~---------~---~~~ll~~le~~--------------~~~~~~Il  165 (248)
                      +.+.........    ...|.||+|||+|.+-+.         .   ...|+.+++.+              ...+.+|.
T Consensus       198 ~~F~~A~~~a~~----~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIa  273 (413)
T PLN00020        198 QRYREAADIIKK----KGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIV  273 (413)
T ss_pred             HHHHHHHHHhhc----cCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEE
Confidence            666655432211    347889999999865321         1   13455555432              33467899


Q ss_pred             EecCCCcccHHHhh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccc
Q 025758          166 CCNSSSKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR  223 (248)
Q Consensus       166 ~t~~~~~~~~~l~s--R~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g  223 (248)
                      +||+++.+.++|++  |+... |..|+.++..+|++.++.+.++  +.+.+..|++.+.|
T Consensus       274 TTNrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~g  330 (413)
T PLN00020        274 TGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPG  330 (413)
T ss_pred             eCCCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCC
Confidence            99999999999998  77543 4589999999999988877654  47788888887755

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.60  E-value=1.1e-14  Score=136.20  Aligned_cols=201  Identities=17%  Similarity=0.263  Sum_probs=135.0

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      ++=+...++.++|.++.++.+..++.....++++|+||||+|||++++.+|..+........ ..+..            
T Consensus       171 ~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~-l~~~~------------  237 (821)
T CHL00095        171 KEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI-LEDKL------------  237 (821)
T ss_pred             HHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh-hcCCe------------
Confidence            34456678999999999999999998777778999999999999999999997643211100 00000            


Q ss_pred             ceeeecccceeeeCCCC--cCcc----hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--------HHHHHH
Q 025758           85 ELTTLSSANHVELSPSD--AGFQ----DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHSL  150 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~~l  150 (248)
                               .+.+....  .+..    ....+...++.+..         ..+.|+||||++.+..        ...+.|
T Consensus       238 ---------i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~---------~~~~ILfiDEih~l~~~g~~~g~~~~a~lL  299 (821)
T CHL00095        238 ---------VITLDIGLLLAGTKYRGEFEERLKRIFDEIQE---------NNNIILVIDEVHTLIGAGAAEGAIDAANIL  299 (821)
T ss_pred             ---------EEEeeHHHHhccCCCccHHHHHHHHHHHHHHh---------cCCeEEEEecHHHHhcCCCCCCcccHHHHh
Confidence                     01111110  0111    11223444444432         2456999999986632        234444


Q ss_pred             HHHHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHc
Q 025758          151 RRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKS  221 (248)
Q Consensus       151 l~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~  221 (248)
                      ...+.  .....+|.+|+..+     +..+.+.+|+..+.++.|+.++...++......    .++.++++++..++..+
T Consensus       300 kp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls  377 (821)
T CHL00095        300 KPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS  377 (821)
T ss_pred             HHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence            44444  23456777777654     367899999999999999999998888876543    36678999999988776


Q ss_pred             cc---c---HHHHHHHHHHHhhh
Q 025758          222 NR---S---LRRAILSFETCRVQ  238 (248)
Q Consensus       222 ~g---~---~r~~~~~l~~~~~~  238 (248)
                      .+   +   ++.++++|+.++..
T Consensus       378 ~~yi~~r~lPdkaidlld~a~a~  400 (821)
T CHL00095        378 DQYIADRFLPDKAIDLLDEAGSR  400 (821)
T ss_pred             hccCccccCchHHHHHHHHHHHH
Confidence            53   3   88899999998854

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.60  E-value=1.8e-13  Score=111.87  Aligned_cols=104  Identities=18%  Similarity=0.241  Sum_probs=80.1

Q ss_pred             eeEEEEeCCCCCCHHHHHHHHHHHHHhc----------------CCeeEEEEecCCC-----cccHHHhhhhheeeecCC
Q 025758          131 FKVLVLNEVDKLSREAQHSLRRTMEKYS----------------ASCRLILCCNSSS-----KVTEAIRSRCLNIRINSP  189 (248)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~ll~~le~~~----------------~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~  189 (248)
                      ..+++|||++.++++.++.|+.++++..                .+..+|+++|...     .+.+++.+||..+.++.|
T Consensus       106 g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P  185 (262)
T TIGR02640       106 GFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYP  185 (262)
T ss_pred             CCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCC
Confidence            3599999999999999999999997531                1345777777652     568899999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----------cccHHHHHHHHHHHhhhc
Q 025758          190 TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS----------NRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       190 ~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~----------~g~~r~~~~~l~~~~~~~  239 (248)
                      +.++..+|+...+     .++++..+.+++..          .-..|.++.....+...+
T Consensus       186 ~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~  240 (262)
T TIGR02640       186 DIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQD  240 (262)
T ss_pred             CHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcC
Confidence            9999999998653     45677777776443          123788888777766554

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK08485 DNA polymerase III subunit delta'; Validated

Probab=99.59  E-value=1.6e-14  Score=110.23  Aligned_cols=102  Identities=17%  Similarity=0.168  Sum_probs=93.2

Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe-------------eeecCCCHHHHHHHHHH
Q 025758          134 LVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN-------------IRINSPTEEQIVKVLEF  200 (248)
Q Consensus       134 iiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~-------------i~~~~~~~~~~~~il~~  200 (248)
                      ++|+++++|+.++.|+|+|++|+|+.++.||++|+++..++++++|||+.             +.|.+.+.+++.+.+..
T Consensus        58 ~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~  137 (206)
T PRK08485         58 IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE  137 (206)
T ss_pred             EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999975             77899999999999998


Q ss_pred             HHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758          201 IAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (248)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~  236 (248)
                       +.++++...++..+.|+..+.|.+|+++.+.++..
T Consensus       138 -~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l  172 (206)
T PRK08485        138 -LEKENKLSKEELKELIESLLKECVKYKIPLNEEEL  172 (206)
T ss_pred             -HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence             78888888899999999999999999977665544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.59  E-value=1.3e-15  Score=116.98  Aligned_cols=167  Identities=19%  Similarity=0.311  Sum_probs=106.1

Q ss_pred             CcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec---------cCCcc
Q 025758           11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID---------AGSRN   81 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~---------~~~~~   81 (248)
                      ++..-+|..++++.+.-.+..|..  +.++||+||||||++|++.. |..+++|.+.++|......         .+..+
T Consensus         7 ~l~K~fg~~~VLkgi~l~v~~Gev--v~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF   83 (240)
T COG1126           7 NLSKSFGDKEVLKGISLSVEKGEV--VVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVF   83 (240)
T ss_pred             eeeEEeCCeEEecCcceeEcCCCE--EEEECCCCCCHHHHHHHHHC-CcCCCCceEEECCEeccchhhHHHHHHhcCeec
Confidence            344457777888888877777643  66999999999999999998 8999999999999543211         11111


Q ss_pred             cccc-eeeecccceeeeCCCCc-Ccch---hHHHHHHH-----HHHHhcCCCcCCC------------CCCeeEEEEeCC
Q 025758           82 IDLE-LTTLSSANHVELSPSDA-GFQD---RYVVQEVI-----KEMAKNRPIDTKG------------KRGFKVLVLNEV  139 (248)
Q Consensus        82 ~~~~-~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~-----~~~~~~~~~~~~~------------~~~~~viiiDE~  139 (248)
                      ..++ ++..++.+++.+.+-.. +.+.   ...+.+.+     ..-+..+|..+|+            .-+|+++++|||
T Consensus        84 Q~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP  163 (240)
T COG1126          84 QQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP  163 (240)
T ss_pred             ccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC
Confidence            1111 11111222222222111 1111   11122222     2234567888885            337999999999


Q ss_pred             -CCCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhh
Q 025758          140 -DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       140 -d~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~  181 (248)
                       ..|||+.....+.++.+....+ +.|+.||+ -.+...+.+|+
T Consensus       164 TSALDPElv~EVL~vm~~LA~eGmTMivVTHE-M~FAr~Vadrv  206 (240)
T COG1126         164 TSALDPELVGEVLDVMKDLAEEGMTMIIVTHE-MGFAREVADRV  206 (240)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCeEEEEech-hHHHHHhhheE
Confidence             8999999999999999987665 45555554 56666777776

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.6e-14  Score=127.41  Aligned_cols=201  Identities=19%  Similarity=0.230  Sum_probs=132.0

Q ss_pred             CCCcccccccHHHHHHHHHHhh-----------cCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~-----------~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      -.+|.|+.|.+++++.+...+.           .+++|. ++++||||||||.+|+++|++..-           +|.+.
T Consensus       146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V-----------PFf~i  214 (596)
T COG0465         146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-----------PFFSI  214 (596)
T ss_pred             CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC-----------Cceec
Confidence            3689999999999998887763           345665 999999999999999999986522           22211


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH-----------
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------  145 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----------  145 (248)
                      +++.             ++++...    .+..-+++.+....+         +.|.|++|||+|..+..           
T Consensus       215 SGS~-------------FVemfVG----vGAsRVRdLF~qAkk---------~aP~IIFIDEiDAvGr~Rg~g~Gggnde  268 (596)
T COG0465         215 SGSD-------------FVEMFVG----VGASRVRDLFEQAKK---------NAPCIIFIDEIDAVGRQRGAGLGGGNDE  268 (596)
T ss_pred             cchh-------------hhhhhcC----CCcHHHHHHHHHhhc---------cCCCeEEEehhhhcccccCCCCCCCchH
Confidence            2211             1221110    112235666665543         45679999999987532           


Q ss_pred             ---HHHHHHHHHHHhcCCe--eEEEEecCCCcccHHHhhh--h-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758          146 ---AQHSLRRTMEKYSASC--RLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (248)
Q Consensus       146 ---~~~~ll~~le~~~~~~--~~Il~t~~~~~~~~~l~sR--~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l  217 (248)
                         ..|.++--++....+.  .+|-.||.++-+.++|..-  + +.|..+.|+...+.+|++-++.+..+..+ -.+..+
T Consensus       269 rEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~-Vdl~~i  347 (596)
T COG0465         269 REQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED-VDLKKI  347 (596)
T ss_pred             HHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc-CCHHHH
Confidence               3455666666555433  3344466666677888653  3 68999999999999999976666555522 225558


Q ss_pred             HHHccc-cHHHHHHHHHHHhhhcccccCCCC
Q 025758          218 AEKSNR-SLRRAILSFETCRVQQLRFTMPSV  247 (248)
Q Consensus       218 ~~~~~g-~~r~~~~~l~~~~~~~~~~~~~~v  247 (248)
                      ++.+.| ...++.|+++.+...+.+.....|
T Consensus       348 Ar~tpGfsGAdL~nl~NEAal~aar~n~~~i  378 (596)
T COG0465         348 ARGTPGFSGADLANLLNEAALLAARRNKKEI  378 (596)
T ss_pred             hhhCCCcccchHhhhHHHHHHHHHHhcCeeE
Confidence            888776 467777888887776665544433

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.59  E-value=1.3e-15  Score=127.29  Aligned_cols=151  Identities=21%  Similarity=0.287  Sum_probs=95.0

Q ss_pred             ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceee
Q 025758           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (248)
                      |...+++.+...+..|..  +.|.||||+||||+++++++ +..+++|.+.++|.+.......           ....++
T Consensus        18 ~~~~~l~~vsl~i~~Gei--~gllGpNGaGKSTLl~~l~G-l~~p~~G~v~i~G~~~~~~~~~-----------~~~~ig   83 (306)
T PRK13537         18 GDKLVVDGLSFHVQRGEC--FGLLGPNGAGKTTTLRMLLG-LTHPDAGSISLCGEPVPSRARH-----------ARQRVG   83 (306)
T ss_pred             CCeEEEecceEEEeCCcE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEecccchHH-----------HHhcEE
Confidence            444456666666666643  56999999999999999998 7788999999988755311110           011234


Q ss_pred             eCCCCcCcchhHHHHHHHHHHHhc---------------------------CCCcCCC------------CCCeeEEEEe
Q 025758           97 LSPSDAGFQDRYVVQEVIKEMAKN---------------------------RPIDTKG------------KRGFKVLVLN  137 (248)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~------------~~~~~viiiD  137 (248)
                      +.+.+.......++.+.+..+...                           ....+|+            ..+|+++|+|
T Consensus        84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD  163 (306)
T PRK13537         84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD  163 (306)
T ss_pred             EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence            444333333333333332221111                           1112221            4589999999


Q ss_pred             CC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh
Q 025758          138 EV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       138 E~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      || ..||+.++..+++++.+.... ..+|++||+. ...+.+++|+.
T Consensus       164 EPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~  209 (306)
T PRK13537        164 EPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLC  209 (306)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEE
Confidence            99 899999999999999987544 4555555554 44456677763

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.58  E-value=2.9e-14  Score=104.31  Aligned_cols=115  Identities=27%  Similarity=0.355  Sum_probs=76.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (248)
                      ++|+||||+|||++++.+|+.+.   ...+.+++..                        +. ..........+...+..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~------------------------~~-~~~~~~~~~~i~~~~~~   52 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSE------------------------LI-SSYAGDSEQKIRDFFKK   52 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTH------------------------HH-TSSTTHHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc---cccccccccc------------------------cc-ccccccccccccccccc
Confidence            68999999999999999999761   1111111100                        00 01111222334444554


Q ss_pred             HHhcCCCcCCCCCCeeEEEEeCCCCCCHHH-----------HHHHHHHHHHhcC---CeeEEEEecCCCcccHHHh-hhh
Q 025758          117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREA-----------QHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIR-SRC  181 (248)
Q Consensus       117 ~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-----------~~~ll~~le~~~~---~~~~Il~t~~~~~~~~~l~-sR~  181 (248)
                      .....        .+.|++|||+|.+....           .+.|++.++....   ...+|++||..+.+.+++. +||
T Consensus        53 ~~~~~--------~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf  124 (132)
T PF00004_consen   53 AKKSA--------KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRF  124 (132)
T ss_dssp             HHHTS--------TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTS
T ss_pred             ccccc--------cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCC
Confidence            43311        36899999999987665           6788888887754   3689999999999999999 998


Q ss_pred             -heeeec
Q 025758          182 -LNIRIN  187 (248)
Q Consensus       182 -~~i~~~  187 (248)
                       ..+.++
T Consensus       125 ~~~i~~~  131 (132)
T PF00004_consen  125 DRRIEFP  131 (132)
T ss_dssp             EEEEEE-
T ss_pred             cEEEEcC
Confidence             456554

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=5.2e-14  Score=122.34  Aligned_cols=176  Identities=22%  Similarity=0.335  Sum_probs=117.9

Q ss_pred             CCCcccccccHHHHHHHHHHhhc-----------C-CCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~~-----------~-~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~   75 (248)
                      ..+|+|+=+++++...|..++..           | ..|. +||+||||||||.+|+++|.+-   ..+-+.+-|     
T Consensus       507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa---g~NFisVKG-----  578 (802)
T KOG0733|consen  507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA---GANFISVKG-----  578 (802)
T ss_pred             CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc---cCceEeecC-----
Confidence            36889987888888888877631           1 2344 9999999999999999999854   111111111     


Q ss_pred             ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------
Q 025758           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------  144 (248)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------  144 (248)
                                      +.   +....-| .....++..+....         .+.|.|||+||+|.|-+           
T Consensus       579 ----------------PE---LlNkYVG-ESErAVR~vFqRAR---------~saPCVIFFDEiDaL~p~R~~~~s~~s~  629 (802)
T KOG0733|consen  579 ----------------PE---LLNKYVG-ESERAVRQVFQRAR---------ASAPCVIFFDEIDALVPRRSDEGSSVSS  629 (802)
T ss_pred             ----------------HH---HHHHHhh-hHHHHHHHHHHHhh---------cCCCeEEEecchhhcCcccCCCCchhHH
Confidence                            10   0000001 01112444444333         34688999999998842           


Q ss_pred             HHHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 025758          145 EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-ATRLA  218 (248)
Q Consensus       145 ~~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~-~~~l~  218 (248)
                      ...|.||.-++..  ..++.+|-.||.|+-+.++++.-.   ..+..+.|+.++..+||+.+..+.+..+++++ ++.|+
T Consensus       630 RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia  709 (802)
T KOG0733|consen  630 RVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIA  709 (802)
T ss_pred             HHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHh
Confidence            2355666666654  345678888999999999998755   57888999999999999998886666666555 77777


Q ss_pred             HHc
Q 025758          219 EKS  221 (248)
Q Consensus       219 ~~~  221 (248)
                      ...
T Consensus       710 ~~~  712 (802)
T KOG0733|consen  710 RNT  712 (802)
T ss_pred             hcc
Confidence            443

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.58  E-value=1.2e-15  Score=119.79  Aligned_cols=165  Identities=15%  Similarity=0.290  Sum_probs=107.2

Q ss_pred             cccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecc
Q 025758           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (248)
Q Consensus        12 ~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (248)
                      +..-+++..+++.+...+++|.  .++|.||+||||||+.++|-+ +..+++|.+.++|.++...          ....-
T Consensus         7 vsk~y~~~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINr-Liept~G~I~i~g~~i~~~----------d~~~L   73 (309)
T COG1125           7 VSKRYGNKKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINR-LIEPTSGEILIDGEDISDL----------DPVEL   73 (309)
T ss_pred             eehhcCCceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhc-ccCCCCceEEECCeecccC----------CHHHH
Confidence            3444666777777777776663  467999999999999999998 8899999999999876511          11111


Q ss_pred             cceeeeCCCCcCcchhHHHHHH----------------------H-------HHHHhcCCCcCCC------------CCC
Q 025758           92 ANHVELSPSDAGFQDRYVVQEV----------------------I-------KEMAKNRPIDTKG------------KRG  130 (248)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~----------------------~-------~~~~~~~~~~~~~------------~~~  130 (248)
                      ...++|.....+..+..++.+.                      +       ..+...+|..+|+            ..+
T Consensus        74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad  153 (309)
T COG1125          74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD  153 (309)
T ss_pred             HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence            1223333333333333333222                      2       2345557778885            447


Q ss_pred             eeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhh------heeeecCCC
Q 025758          131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRC------LNIRINSPT  190 (248)
Q Consensus       131 ~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~------~~i~~~~~~  190 (248)
                      |.++++||| ..+||-.+..+-..+.+..+  ..+||+.||+.++-. .+-+|.      .++.+..|.
T Consensus       154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~-kLadri~vm~~G~i~Q~~~P~  221 (309)
T COG1125         154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEAL-KLADRIAVMDAGEIVQYDTPD  221 (309)
T ss_pred             CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHH-hhhceEEEecCCeEEEeCCHH
Confidence            999999999 88998666655555544432  357899998876544 455665      456666653

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.58  E-value=1.3e-15  Score=121.92  Aligned_cols=180  Identities=17%  Similarity=0.199  Sum_probs=106.0

Q ss_pred             ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-Ccccccce--------e
Q 025758           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLEL--------T   87 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~   87 (248)
                      +.+.+++.++..++.|..  +.+.||||||||||.+++++ +..+..|.+.++|+++..-.+ ...+...+        .
T Consensus        13 ~~~~il~~ls~~i~~G~i--~~iiGpNG~GKSTLLk~l~g-~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~   89 (258)
T COG1120          13 GGKPILDDLSFSIPKGEI--TGILGPNGSGKSTLLKCLAG-LLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF   89 (258)
T ss_pred             CCeeEEecceEEecCCcE--EEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence            445566677777766654  55999999999999999998 778999999999975541111 00000000        0


Q ss_pred             eecccce--------eeeCCCCcCcchhHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758           88 TLSSANH--------VELSPSDAGFQDRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DK  141 (248)
Q Consensus        88 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~  141 (248)
                      ..++.+.        ..+.. ..+..+...+.+.++.     ++...-..+|+            .++++++++||| .+
T Consensus        90 ~~tV~d~V~~GR~p~~~~~~-~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~  168 (258)
T COG1120          90 GLTVYELVLLGRYPHLGLFG-RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH  168 (258)
T ss_pred             CcEEeehHhhcCCccccccc-CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccc
Confidence            0011111        11111 1111122233333333     23333334553            568999999999 89


Q ss_pred             CCHHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhh------heeeecCCCHHHHHHHHHHH
Q 025758          142 LSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRC------LNIRINSPTEEQIVKVLEFI  201 (248)
Q Consensus       142 l~~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~------~~i~~~~~~~~~~~~il~~~  201 (248)
                      ||...+-.+++++.+....  ..+|++.|++. ..-.+.++.      .++....|..-...+.+..+
T Consensus       169 LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~V  235 (258)
T COG1120         169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVLTEENLREV  235 (258)
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHH
Confidence            9999999999999988633  56777777753 333555554      34555565544444444443

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.58  E-value=3.7e-14  Score=129.14  Aligned_cols=195  Identities=17%  Similarity=0.249  Sum_probs=123.3

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHhh-----------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~   72 (248)
                      ......+|.++.|...+++.+...+.           .+..+ +++|+||+|+|||++++++++.+..+-   +.+++..
T Consensus       144 ~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is~~~  220 (644)
T PRK10733        144 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISGSD  220 (644)
T ss_pred             chhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEehHH
Confidence            33445788999998888877766542           12333 499999999999999999998763211   1111110


Q ss_pred             eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--------
Q 025758           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------  144 (248)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------  144 (248)
                      +                     ...   ..+. ....+++.+....         ...|.|++|||+|.+..        
T Consensus       221 ~---------------------~~~---~~g~-~~~~~~~~f~~a~---------~~~P~IifIDEiD~l~~~r~~~~~g  266 (644)
T PRK10733        221 F---------------------VEM---FVGV-GASRVRDMFEQAK---------KAAPCIIFIDEIDAVGRQRGAGLGG  266 (644)
T ss_pred             h---------------------HHh---hhcc-cHHHHHHHHHHHH---------hcCCcEEEehhHhhhhhccCCCCCC
Confidence            0                     000   0010 1112344444332         23567999999988732        


Q ss_pred             ------HHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758          145 ------EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF  213 (248)
Q Consensus       145 ------~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~  213 (248)
                            ...+.++..++....  ...+|.+||+++.+.+++.+  |+ ..+.++.|+.+++..++...+.+..+..+ -.
T Consensus       267 ~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~-~d  345 (644)
T PRK10733        267 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD-ID  345 (644)
T ss_pred             CchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc-CC
Confidence                  123455555555433  35678889999999999985  77 78999999999999999988876554322 22


Q ss_pred             HHHHHHHccc-cHHHHHHHHHHHhh
Q 025758          214 ATRLAEKSNR-SLRRAILSFETCRV  237 (248)
Q Consensus       214 ~~~l~~~~~g-~~r~~~~~l~~~~~  237 (248)
                      +..+++.+.| +.+++.++++.+..
T Consensus       346 ~~~la~~t~G~sgadl~~l~~eAa~  370 (644)
T PRK10733        346 AAIIARGTPGFSGADLANLVNEAAL  370 (644)
T ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHH
Confidence            5667777766 44555555555443

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.57  E-value=1.2e-13  Score=118.98  Aligned_cols=191  Identities=20%  Similarity=0.264  Sum_probs=110.7

Q ss_pred             ccccHHHHHHHHHHhhc-------C---------CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758           15 VIVHQDIAQNLKKLVTE-------Q---------DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (248)
Q Consensus        15 lig~~~~~~~l~~~~~~-------~---------~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~   78 (248)
                      ++||+.+++.+...+.+       +         ...+++|+||+|||||++|+++|..+..+-   +.+++.       
T Consensus        73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf---~~id~~-------  142 (412)
T PRK05342         73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF---AIADAT-------  142 (412)
T ss_pred             eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc---eecchh-------
Confidence            58999999988665521       1         124599999999999999999998663211   111110       


Q ss_pred             CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH--------------
Q 025758           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------------  144 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------------  144 (248)
                                       .+...  +.. +......+..+.......+ ....+.|++|||+|.+.+              
T Consensus       143 -----------------~l~~~--gyv-G~d~e~~l~~l~~~~~~~~-~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~  201 (412)
T PRK05342        143 -----------------TLTEA--GYV-GEDVENILLKLLQAADYDV-EKAQRGIVYIDEIDKIARKSENPSITRDVSGE  201 (412)
T ss_pred             -----------------hcccC--Ccc-cchHHHHHHHHHHhccccH-HHcCCcEEEEechhhhccccCCCCcCCCcccH
Confidence                             00000  000 0112222222211111111 133567999999999965              


Q ss_pred             HHHHHHHHHHHHhc-----C--------CeeEEEEecC--------C---------------------C-----------
Q 025758          145 EAQHSLRRTMEKYS-----A--------SCRLILCCNS--------S---------------------S-----------  171 (248)
Q Consensus       145 ~~~~~ll~~le~~~-----~--------~~~~Il~t~~--------~---------------------~-----------  171 (248)
                      ..+++|+++||...     .        +..+|.|+|-        .                     .           
T Consensus       202 ~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~  281 (412)
T PRK05342        202 GVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGEL  281 (412)
T ss_pred             HHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHH
Confidence            37899999998421     0        1112222221        0                     0           


Q ss_pred             ------------cccHHHhhhh-heeeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHcc---
Q 025758          172 ------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKSN---  222 (248)
Q Consensus       172 ------------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~----~-------~~~~~~--~~~~~~~~~l~~~~~---  222 (248)
                                  .+.|.+..|+ .++.|.+++.+++..|+..    .       +...++  .++++++++|++.+.   
T Consensus       282 ~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~  361 (412)
T PRK05342        282 LKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERK  361 (412)
T ss_pred             HHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCC
Confidence                        1355666777 5789999999999999972    2       233444  588999999998742   


Q ss_pred             ccHHHHHHHHHHHh
Q 025758          223 RSLRRAILSFETCR  236 (248)
Q Consensus       223 g~~r~~~~~l~~~~  236 (248)
                      -.+|.+-..++...
T Consensus       362 ~GAR~Lrriie~~l  375 (412)
T PRK05342        362 TGARGLRSILEEIL  375 (412)
T ss_pred             CCCchHHHHHHHHh
Confidence            12444444444433

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.57  E-value=1.2e-15  Score=127.35  Aligned_cols=168  Identities=14%  Similarity=0.262  Sum_probs=112.1

Q ss_pred             ccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc------cccc-
Q 025758           13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN------IDLE-   85 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~-   85 (248)
                      ..-+|...+++.+.-.+.+|.  .+.|.||+||||||+.|+||+ +..+++|.|.++|+++....|..+      ..|. 
T Consensus        12 ~k~yg~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAG-fe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YAL   88 (352)
T COG3842          12 SKSFGDFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAG-FEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYAL   88 (352)
T ss_pred             eeecCCeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhhcccceeecCccc
Confidence            334565556666666666663  366999999999999999998 889999999999988765444322      2222 


Q ss_pred             eeeecccceeeeCCCCcC-cchh---HHHHHHH-----HHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           86 LTTLSSANHVELSPSDAG-FQDR---YVVQEVI-----KEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~-----~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      ++.+++.+++.|...-.. ....   ..+.+++     ..+...+|..+|+            ..+|+++++||+ ..||
T Consensus        89 FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD  168 (352)
T COG3842          89 FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD  168 (352)
T ss_pred             CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchh
Confidence            344455566665554222 1211   1333332     3345556667774            448999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+..+..-+.+...  ..++|+.||+.++-+ ++.+|+.+.
T Consensus       169 ~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl-~msDrI~Vm  210 (352)
T COG3842         169 AKLREQMRKELKELQRELGITFVYVTHDQEEAL-AMSDRIAVM  210 (352)
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhccceEEc
Confidence            8877777666655532  468999999977655 677887443

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=4.6e-14  Score=113.25  Aligned_cols=174  Identities=23%  Similarity=0.286  Sum_probs=117.2

Q ss_pred             CCcccccccHHHHHHHHHHh----------hcCCCC--eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758           10 KTLDQVIVHQDIAQNLKKLV----------TEQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~----------~~~~~~--~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~   77 (248)
                      ..|+|+.|.+.+++.|+..+          ..++.|  ++||+||||+|||.||+++|.+.+   +.-            
T Consensus       130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn---STF------------  194 (439)
T KOG0739|consen  130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN---STF------------  194 (439)
T ss_pred             CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC---Cce------------
Confidence            57899999999999999876          234433  499999999999999999998542   111            


Q ss_pred             CCcccccceeeecccceeeeCCCCcC---cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-------HH-
Q 025758           78 GSRNIDLELTTLSSANHVELSPSDAG---FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------EA-  146 (248)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------~~-  146 (248)
                                       +.+..++.-   ..+.+.+...+-.++.        ++.|.||+|||+|.+..       ++ 
T Consensus       195 -----------------FSvSSSDLvSKWmGESEkLVknLFemAR--------e~kPSIIFiDEiDslcg~r~enEseas  249 (439)
T KOG0739|consen  195 -----------------FSVSSSDLVSKWMGESEKLVKNLFEMAR--------ENKPSIIFIDEIDSLCGSRSENESEAS  249 (439)
T ss_pred             -----------------EEeehHHHHHHHhccHHHHHHHHHHHHH--------hcCCcEEEeehhhhhccCCCCCchHHH
Confidence                             122222211   1122223333333443        45778999999997731       11 


Q ss_pred             ---HHHHHHHHHHh---cCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 025758          147 ---QHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE  219 (248)
Q Consensus       147 ---~~~ll~~le~~---~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~  219 (248)
                         ...|+--+..-   ...+.++-.||-+-.+..+++.|+ ..|.++.|........++-.+..-...+.+..+..+++
T Consensus       250 RRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~  329 (439)
T KOG0739|consen  250 RRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELAR  329 (439)
T ss_pred             HHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHh
Confidence               22344333321   122334555677778889999999 58999999999888888887777777888999999987


Q ss_pred             Hccc
Q 025758          220 KSNR  223 (248)
Q Consensus       220 ~~~g  223 (248)
                      .++|
T Consensus       330 kTeG  333 (439)
T KOG0739|consen  330 KTEG  333 (439)
T ss_pred             hcCC
Confidence            7654

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.56  E-value=8.6e-15  Score=116.70  Aligned_cols=158  Identities=17%  Similarity=0.254  Sum_probs=97.3

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee--------cc
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL--------SS   91 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~   91 (248)
                      .+++.+...+..|..  +.+.||||+||||+++++.+ +..+..|.+.+.+.+.....+.....|--+..        ++
T Consensus        18 ~vl~~i~l~v~~G~~--~~iiGPNGaGKSTLlK~iLG-ll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV   94 (254)
T COG1121          18 PVLEDISLSVEKGEI--TALIGPNGAGKSTLLKAILG-LLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV   94 (254)
T ss_pred             eeeeccEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence            577777777777754  44999999999999999998 78999999999887654222211111111100        11


Q ss_pred             cceeeeC--CCC-----cCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           92 ANHVELS--PSD-----AGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        92 ~~~~~~~--~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      .+.+...  ...     ....+...+.+.++..     ....-..+|+            .++|++++|||| ..+|+..
T Consensus        95 ~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~  174 (254)
T COG1121          95 KDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG  174 (254)
T ss_pred             HHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHH
Confidence            1111111  000     0011123344444332     2222224553            568999999999 8999999


Q ss_pred             HHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhh
Q 025758          147 QHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       147 ~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~  181 (248)
                      +..++.+|.+....+ .+++++++...+. +..+|.
T Consensus       175 ~~~i~~lL~~l~~eg~tIl~vtHDL~~v~-~~~D~v  209 (254)
T COG1121         175 QKEIYDLLKELRQEGKTVLMVTHDLGLVM-AYFDRV  209 (254)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCcHHhH-hhCCEE
Confidence            999999999886654 5666666655555 555766

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.56  E-value=5.1e-15  Score=116.62  Aligned_cols=162  Identities=16%  Similarity=0.230  Sum_probs=102.3

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc---cccc-ceeeecc
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDL-ELTTLSS   91 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~   91 (248)
                      ++...+++.+...+..|.  .+.+.||+||||||+.+++|+ +..+.+|.+.++|.+.....+..   ++.+ -+++.++
T Consensus        13 f~~~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAG-L~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv   89 (248)
T COG1116          13 FGGVEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAG-LEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTV   89 (248)
T ss_pred             eCceEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhH
Confidence            344455556666666554  467999999999999999998 88999999999997653111111   1111 1344455


Q ss_pred             cceeeeCCCCcCcchh---HHHHHHHH-----HHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHH
Q 025758           92 ANHVELSPSDAGFQDR---YVVQEVIK-----EMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSL  150 (248)
Q Consensus        92 ~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~l  150 (248)
                      .+++.+.....+....   ..+.+.++     .+...+|..+|+            ..+|+++++||| ..||.-....+
T Consensus        90 ~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~l  169 (248)
T COG1116          90 LDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL  169 (248)
T ss_pred             HhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHH
Confidence            5666666554442222   22344433     356677888885            558999999999 88887655544


Q ss_pred             HHHHHHh--cCCeeEEEEecCCCcccHHHhhhh
Q 025758          151 RRTMEKY--SASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       151 l~~le~~--~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ...+.+.  ....+++++||+.++-. .+.+|+
T Consensus       170 q~~l~~lw~~~~~TvllVTHdi~EAv-~LsdRi  201 (248)
T COG1116         170 QDELLRLWEETRKTVLLVTHDVDEAV-YLADRV  201 (248)
T ss_pred             HHHHHHHHHhhCCEEEEEeCCHHHHH-hhhCEE
Confidence            4444333  12367889999876433 334444

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.56  E-value=1.5e-14  Score=113.21  Aligned_cols=155  Identities=15%  Similarity=0.219  Sum_probs=101.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +++.++..+..|..-+  +.|++||||||++|++++ +..+..|.+.++|.+.....+....+...+.       .++-.
T Consensus        22 ~l~~VS~~i~~Ge~lg--ivGeSGsGKSTL~r~l~G-l~~p~~G~I~~~G~~~~~~~~~~~~~~~VQm-------VFQDp   91 (252)
T COG1124          22 ALNNVSLEIERGETLG--IVGESGSGKSTLARLLAG-LEKPSSGSILLDGKPLAPKKRAKAFYRPVQM-------VFQDP   91 (252)
T ss_pred             hhcceeEEecCCCEEE--EEcCCCCCHHHHHHHHhc-ccCCCCceEEECCcccCccccchhhccceeE-------EecCC
Confidence            6666666666665545  999999999999999998 8899999999999755422211111011110       11111


Q ss_pred             CcCcchhHH--------------------HHHHHHH------HHhcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758          101 DAGFQDRYV--------------------VQEVIKE------MAKNRPIDTKG------------KRGFKVLVLNEV-DK  141 (248)
Q Consensus       101 ~~~~~~~~~--------------------~~~~~~~------~~~~~~~~~~~------------~~~~~viiiDE~-d~  141 (248)
                      .....+..+                    +.++++.      +...+|..+|+            ..+|+++|+||+ ..
T Consensus        92 ~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSa  171 (252)
T COG1124          92 YSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA  171 (252)
T ss_pred             ccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhh
Confidence            111111111                    2333322      34446667775            348999999999 89


Q ss_pred             CCHHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhheeee
Q 025758          142 LSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNIRI  186 (248)
Q Consensus       142 l~~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~i~~  186 (248)
                      ||...|..++.++.+....  ..+|++||+ -.+..-+++|+.+..-
T Consensus       172 LD~siQa~IlnlL~~l~~~~~lt~l~IsHd-l~~v~~~cdRi~Vm~~  217 (252)
T COG1124         172 LDVSVQAQILNLLLELKKERGLTYLFISHD-LALVEHMCDRIAVMDN  217 (252)
T ss_pred             hcHHHHHHHHHHHHHHHHhcCceEEEEeCc-HHHHHHHhhheeeeeC
Confidence            9999999999999877543  478888877 5566789999855443

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.56  E-value=4.9e-13  Score=120.04  Aligned_cols=201  Identities=16%  Similarity=0.156  Sum_probs=131.2

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (248)
                      .+++.-++++++|+....+.+.+.+..  ....+|+|+|++||||+++|+.|..........-+.+++..+.        
T Consensus       188 ~~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~--------  259 (534)
T TIGR01817       188 ARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS--------  259 (534)
T ss_pred             cccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC--------
Confidence            356667899999998888777766543  2334599999999999999999997433233233333221110        


Q ss_pred             ccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhc---------CCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHH
Q 025758           83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN---------RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT  153 (248)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~  153 (248)
                                             + ......+  +...         ...+.....+...++|||++.|++..+..|+++
T Consensus       260 -----------------------~-~~~~~~l--fg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~  313 (534)
T TIGR01817       260 -----------------------E-TLLESEL--FGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRV  313 (534)
T ss_pred             -----------------------H-HHHHHHH--cCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHH
Confidence                                   0 0000000  0000         000111133556899999999999999999999


Q ss_pred             HHHhc-----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCC--HHHHHHHHHHHHHH----c--
Q 025758          154 MEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPT--EEQIVKVLEFIAKK----E--  205 (248)
Q Consensus       154 le~~~-----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~--~~~~~~il~~~~~~----~--  205 (248)
                      +++..           .+.++|++|+...       .+.+.|..|+  ..|.+|++.  .+++..++...+.+    .  
T Consensus       314 l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~  393 (534)
T TIGR01817       314 LQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGR  393 (534)
T ss_pred             HhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCC
Confidence            98632           1356788876552       3555666776  467788776  45565555555442    1  


Q ss_pred             CCCCCHHHHHHHHHH-ccccHHHHHHHHHHHhhhc
Q 025758          206 GLQLPSGFATRLAEK-SNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       206 ~~~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~  239 (248)
                      ...++++++..|... ..||+|++.+.++.+....
T Consensus       394 ~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~  428 (534)
T TIGR01817       394 PLTITPSAIRVLMSCKWPGNVRELENCLERTATLS  428 (534)
T ss_pred             CCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence            256899999999988 4999999999999988643

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.55  E-value=1.1e-13  Score=128.38  Aligned_cols=177  Identities=19%  Similarity=0.302  Sum_probs=115.3

Q ss_pred             CCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~   74 (248)
                      ...+|+|+.|.+.+++.+..++..             ....+++|+||||||||++|+++|+.+..+   .+.+++..+ 
T Consensus       173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~---~i~i~~~~i-  248 (733)
T TIGR01243       173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY---FISINGPEI-  248 (733)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe---EEEEecHHH-
Confidence            456899999999999888877631             112349999999999999999999966211   111111100 


Q ss_pred             eccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-----------
Q 025758           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------  143 (248)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------  143 (248)
                                             .....+ .....+...+....         ...+.+++|||+|.+.           
T Consensus       249 -----------------------~~~~~g-~~~~~l~~lf~~a~---------~~~p~il~iDEid~l~~~r~~~~~~~~  295 (733)
T TIGR01243       249 -----------------------MSKYYG-ESEERLREIFKEAE---------ENAPSIIFIDEIDAIAPKREEVTGEVE  295 (733)
T ss_pred             -----------------------hccccc-HHHHHHHHHHHHHH---------hcCCcEEEeehhhhhcccccCCcchHH
Confidence                                   000011 11122344444333         2356799999998763           


Q ss_pred             HHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 025758          144 REAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRL  217 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~l  217 (248)
                      ....+.|+..++.....  ..+|.+||.+..+.+++++  |+ ..+.++.|+.++...+++.....  +.+. +..++.+
T Consensus       296 ~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~l  373 (733)
T TIGR01243       296 KRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKL  373 (733)
T ss_pred             HHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHH
Confidence            23466788888765433  3456678888889999876  66 57999999999999999865543  3332 3347777


Q ss_pred             HHHccc
Q 025758          218 AEKSNR  223 (248)
Q Consensus       218 ~~~~~g  223 (248)
                      ++.+.|
T Consensus       374 a~~t~G  379 (733)
T TIGR01243       374 AEVTHG  379 (733)
T ss_pred             HHhCCC
Confidence            777765

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.55  E-value=3.6e-15  Score=126.05  Aligned_cols=150  Identities=21%  Similarity=0.297  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (248)
                      .+++.+...+..|..  +.|.||||+||||+++++++ +..+.+|.+.++|.+........           ...+++.+
T Consensus        55 ~~l~~is~~i~~Gei--~gLlGpNGaGKSTLl~~L~G-l~~p~~G~i~i~G~~~~~~~~~~-----------~~~ig~v~  120 (340)
T PRK13536         55 AVVNGLSFTVASGEC--FGLLGPNGAGKSTIARMILG-MTSPDAGKITVLGVPVPARARLA-----------RARIGVVP  120 (340)
T ss_pred             EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCceEEEECCEECCcchHHH-----------hccEEEEe
Confidence            344555555555533  56999999999999999998 77899999999997543111100           01122222


Q ss_pred             CCcCcchhHHHHH----------------------HHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-
Q 025758          100 SDAGFQDRYVVQE----------------------VIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus       100 ~~~~~~~~~~~~~----------------------~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                      .........++.+                      .++.+.     ......+|+            ..+|+++|+||| 
T Consensus       121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt  200 (340)
T PRK13536        121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT  200 (340)
T ss_pred             CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            2222211111111                      121110     111112221            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ..||+..+..+++++.+.......|++++|.....+.+++|+.+
T Consensus       201 ~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~i  244 (340)
T PRK13536        201 TGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCV  244 (340)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence            89999999999999988754444444444444555677777743

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.4e-13  Score=113.42  Aligned_cols=184  Identities=23%  Similarity=0.291  Sum_probs=114.9

Q ss_pred             CCcccccccHHHHHHHHHHhh----------cCC---C-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758           10 KTLDQVIVHQDIAQNLKKLVT----------EQD---C-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~----------~~~---~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~   75 (248)
                      .+|+|+-|.+.+++.++..+-          .++   . .+++|+||||+|||-+|+++|.+..+ .+..+.+.      
T Consensus        89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga-~fInv~~s------  161 (386)
T KOG0737|consen   89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA-NFINVSVS------  161 (386)
T ss_pred             eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC-Ccceeecc------
Confidence            478899999999999987651          222   2 24999999999999999999997522 11111110      


Q ss_pred             ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-------HHH--
Q 025758           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------REA--  146 (248)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------~~~--  146 (248)
                                            ...+..+.+.+.....+-.++.        +=.|.+|+|||+|.+-       .++  
T Consensus       162 ----------------------~lt~KWfgE~eKlv~AvFslAs--------Kl~P~iIFIDEvds~L~~R~s~dHEa~a  211 (386)
T KOG0737|consen  162 ----------------------NLTSKWFGEAQKLVKAVFSLAS--------KLQPSIIFIDEVDSFLGQRRSTDHEATA  211 (386)
T ss_pred             ----------------------ccchhhHHHHHHHHHHHHhhhh--------hcCcceeehhhHHHHHhhcccchHHHHH
Confidence                                  0011112222333333333333        2378899999997552       111  


Q ss_pred             --HHHHHHHHHHhcC----CeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 025758          147 --QHSLRRTMEKYSA----SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE  219 (248)
Q Consensus       147 --~~~ll~~le~~~~----~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~  219 (248)
                        .+.|..+=+....    .+.++-.||.|.++.+++.+|+ ..++++-|+.++..+||.-++.++++. ++=.+..+++
T Consensus       212 ~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~  290 (386)
T KOG0737|consen  212 MMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQ  290 (386)
T ss_pred             HHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHH
Confidence              1222222222221    2345555899999999999998 789999999999999999999998875 1122555665


Q ss_pred             Hccc-cHHHHHHH
Q 025758          220 KSNR-SLRRAILS  231 (248)
Q Consensus       220 ~~~g-~~r~~~~~  231 (248)
                      .+.| +.+++.++
T Consensus       291 ~t~GySGSDLkel  303 (386)
T KOG0737|consen  291 MTEGYSGSDLKEL  303 (386)
T ss_pred             hcCCCcHHHHHHH
Confidence            5543 33444433

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.54  E-value=2.5e-13  Score=116.48  Aligned_cols=190  Identities=21%  Similarity=0.254  Sum_probs=112.2

Q ss_pred             cccHHHHHHHHHHhh-------c---CC--------CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758           16 IVHQDIAQNLKKLVT-------E---QD--------CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (248)
Q Consensus        16 ig~~~~~~~l~~~~~-------~---~~--------~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~   77 (248)
                      +||+++++.+...+.       .   ..        ..+++|+||+|+|||++|+++|..+..+           |..  
T Consensus        80 iGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~p-----------f~~--  146 (413)
T TIGR00382        80 IGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVP-----------FAI--  146 (413)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCC-----------eEE--
Confidence            899999998876651       1   11        1359999999999999999999865211           110  


Q ss_pred             CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-------------
Q 025758           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------  144 (248)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------------  144 (248)
                            +++        ..+.+.  +.. .......+..+....+..+ ....+.+++|||+|.+.+             
T Consensus       147 ------~da--------~~L~~~--gyv-G~d~e~~L~~~~~~~~~~l-~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg  208 (413)
T TIGR00382       147 ------ADA--------TTLTEA--GYV-GEDVENILLKLLQAADYDV-EKAQKGIIYIDEIDKISRKSENPSITRDVSG  208 (413)
T ss_pred             ------ech--------hhcccc--ccc-cccHHHHHHHHHHhCcccH-HhcccceEEecccchhchhhccccccccccc
Confidence                  000        001111  110 0112222222222111111 123556999999998876             


Q ss_pred             -HHHHHHHHHHHHhc-------------CCeeEEEEecCC---------------------------C------------
Q 025758          145 -EAQHSLRRTMEKYS-------------ASCRLILCCNSS---------------------------S------------  171 (248)
Q Consensus       145 -~~~~~ll~~le~~~-------------~~~~~Il~t~~~---------------------------~------------  171 (248)
                       ..++.|+++++...             .+..+|.|+|-.                           .            
T Consensus       209 ~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~  288 (413)
T TIGR00382       209 EGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLL  288 (413)
T ss_pred             hhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHH
Confidence             57999999996421             122345554430                           0            


Q ss_pred             -----------cccHHHhhhh-heeeecCCCHHHHHHHHHHH----HH-------HcCC--CCCHHHHHHHHHHcc---c
Q 025758          172 -----------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFI----AK-------KEGL--QLPSGFATRLAEKSN---R  223 (248)
Q Consensus       172 -----------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~----~~-------~~~~--~~~~~~~~~l~~~~~---g  223 (248)
                                 .+.|.+..|+ .++.|.+++.+++.+|+...    +.       ..++  .++++++++|++.+.   -
T Consensus       289 ~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~  368 (413)
T TIGR00382       289 RQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKT  368 (413)
T ss_pred             HHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCC
Confidence                       1345666777 57899999999999998762    22       1233  588999999998752   1


Q ss_pred             cHHHHHHHHHHHh
Q 025758          224 SLRRAILSFETCR  236 (248)
Q Consensus       224 ~~r~~~~~l~~~~  236 (248)
                      .+|.+-..++...
T Consensus       369 GAR~Lr~iie~~l  381 (413)
T TIGR00382       369 GARGLRSIVEGLL  381 (413)
T ss_pred             CchHHHHHHHHhh
Confidence            2555555555444

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.54  E-value=1.3e-13  Score=132.86  Aligned_cols=119  Identities=11%  Similarity=0.084  Sum_probs=86.6

Q ss_pred             CCeeEEEEeCCCCCCHHH-----HHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHH
Q 025758          129 RGFKVLVLNEVDKLSREA-----QHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIV  195 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~-----~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~  195 (248)
                      ..|.||+|||+|.++...     .+.|+..+...     ..++.||.+||.++.+.|++++  |+ ..|.++.|+..+..
T Consensus      1731 ~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~ 1810 (2281)
T CHL00206       1731 MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQR 1810 (2281)
T ss_pred             CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHH
Confidence            367899999999887542     34455555432     2345678889999999999998  67 68999999988888


Q ss_pred             HHHHHHHHHcCCCCCHH--HHHHHHHHccc-cHHHHHHHHHHHhhhcccccCCCC
Q 025758          196 KVLEFIAKKEGLQLPSG--FATRLAEKSNR-SLRRAILSFETCRVQQLRFTMPSV  247 (248)
Q Consensus       196 ~il~~~~~~~~~~~~~~--~~~~l~~~~~g-~~r~~~~~l~~~~~~~~~~~~~~v  247 (248)
                      +++.......++.++++  .++.+++.+.| +.+++.+++++++..+-+.....|
T Consensus      1811 kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~I 1865 (2281)
T CHL00206       1811 KHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSII 1865 (2281)
T ss_pred             HHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            88775555556666544  37888888866 688888888888876655444443

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=3.4e-13  Score=120.09  Aligned_cols=195  Identities=19%  Similarity=0.255  Sum_probs=126.6

Q ss_pred             CCCCcccccccHHHHHHHHHHhh----------c-C-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVT----------E-Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~----------~-~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~   74 (248)
                      ...+|.++.|.+.+++.+...+.          . + +.+ ++||+||||||||.+|+++|.+...   .-+.+.+    
T Consensus       237 ~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~---~fi~v~~----  309 (494)
T COG0464         237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS---RFISVKG----  309 (494)
T ss_pred             CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC---eEEEeeC----
Confidence            34678888888888887776652          1 1 223 4999999999999999999984411   1111100    


Q ss_pred             eccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH----------
Q 025758           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------  144 (248)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------  144 (248)
                                       +   .+.....+- ....+++.+....         ...+.||++||+|.+-+          
T Consensus       310 -----------------~---~l~sk~vGe-sek~ir~~F~~A~---------~~~p~iiFiDEiDs~~~~r~~~~~~~~  359 (494)
T COG0464         310 -----------------S---ELLSKWVGE-SEKNIRELFEKAR---------KLAPSIIFIDEIDSLASGRGPSEDGSG  359 (494)
T ss_pred             -----------------H---HHhccccch-HHHHHHHHHHHHH---------cCCCcEEEEEchhhhhccCCCCCchHH
Confidence                             0   111111111 1122444444333         23677999999997731          


Q ss_pred             -HHHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 025758          145 -EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRL  217 (248)
Q Consensus       145 -~~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~-~~~~~~~~l  217 (248)
                       ...+.++..++..  ..++.+|.+||.+..+.+++..  |+ ..+.+++|+.++..++++..+...+.. .++-.+..+
T Consensus       360 ~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l  439 (494)
T COG0464         360 RRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEEL  439 (494)
T ss_pred             HHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHH
Confidence             3455666666533  3445678889999999999998  88 689999999999999999998866554 335557777


Q ss_pred             HHHccc-cHHHHHHHHHHHhhhc
Q 025758          218 AEKSNR-SLRRAILSFETCRVQQ  239 (248)
Q Consensus       218 ~~~~~g-~~r~~~~~l~~~~~~~  239 (248)
                      ++.+.| +..++..+++.+...+
T Consensus       440 ~~~t~~~sgadi~~i~~ea~~~~  462 (494)
T COG0464         440 AEITEGYSGADIAALVREAALEA  462 (494)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHH
Confidence            765543 4566666666665443

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=3.1e-13  Score=106.17  Aligned_cols=165  Identities=19%  Similarity=0.333  Sum_probs=108.4

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~   69 (248)
                      .+||....+.+=+=|.++..+.++..++-             ..+.+++|+||||+|||.+|++.|.+-.|   .-+++.
T Consensus       137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c---~firvs  213 (404)
T KOG0728|consen  137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---TFIRVS  213 (404)
T ss_pred             hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce---EEEEec
Confidence            45565554544444567777777665531             12345999999999999999999985422   111221


Q ss_pred             ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------
Q 025758           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------  143 (248)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------  143 (248)
                      |....                 .   .|-    | .....+++.+--..         +..|.+||+||+|.++      
T Consensus       214 gselv-----------------q---k~i----g-egsrmvrelfvmar---------ehapsiifmdeidsigs~r~e~  259 (404)
T KOG0728|consen  214 GSELV-----------------Q---KYI----G-EGSRMVRELFVMAR---------EHAPSIIFMDEIDSIGSSRVES  259 (404)
T ss_pred             hHHHH-----------------H---HHh----h-hhHHHHHHHHHHHH---------hcCCceEeeecccccccccccC
Confidence            11000                 0   000    0 11123455444333         3356799999999873      


Q ss_pred             -----HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHH
Q 025758          144 -----REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKK  204 (248)
Q Consensus       144 -----~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~  204 (248)
                           .+.+..++++++..     .++.++|+.||..+-+.+++....   ..|.||+|+.+...+||+-.-.+
T Consensus       260 ~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrk  333 (404)
T KOG0728|consen  260 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK  333 (404)
T ss_pred             CCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh
Confidence                 45678888888754     467899999999999999998755   57999999999999998765433

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.3e-13  Score=122.68  Aligned_cols=179  Identities=19%  Similarity=0.246  Sum_probs=113.9

Q ss_pred             cCCCCCcccccccHHHHHHHHHHhh----------cCCC--CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758            6 KYRPKTLDQVIVHQDIAQNLKKLVT----------EQDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus         6 ky~p~~~~~lig~~~~~~~l~~~~~----------~~~~--~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      |-.-.+|+|+=|.++++..+...++          .|-.  .+++|+||||||||-+|+++|.++               
T Consensus       665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---------------  729 (953)
T KOG0736|consen  665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---------------  729 (953)
T ss_pred             CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---------------
Confidence            3445689999999999999888774          1212  239999999999999999999865               


Q ss_pred             eeccCCcccccceeeec--ccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH------
Q 025758           74 KIDAGSRNIDLELTTLS--SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------  145 (248)
Q Consensus        74 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~------  145 (248)
                                 ++.+++  .++.+-+   .-| ...+.+++.+.+..         ...|.|||+||+|.+.|+      
T Consensus       730 -----------sL~FlSVKGPELLNM---YVG-qSE~NVR~VFerAR---------~A~PCVIFFDELDSlAP~RG~sGD  785 (953)
T KOG0736|consen  730 -----------SLNFLSVKGPELLNM---YVG-QSEENVREVFERAR---------SAAPCVIFFDELDSLAPNRGRSGD  785 (953)
T ss_pred             -----------eeeEEeecCHHHHHH---Hhc-chHHHHHHHHHHhh---------ccCCeEEEeccccccCccCCCCCC
Confidence                       111111  1111110   001 12234667666555         346789999999998643      


Q ss_pred             -------HHHHHHHHHHHhcC----CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          146 -------AQHSLRRTMEKYSA----SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       146 -------~~~~ll~~le~~~~----~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                             ....|+.-++..+.    ..-+|-.||+|+-+.++|..  |+ ..+...+.+..+-+..+.+.+. +++.+++
T Consensus       786 SGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlT-rkFkLde  864 (953)
T KOG0736|consen  786 SGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALT-RKFKLDE  864 (953)
T ss_pred             ccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHH-HHccCCC
Confidence                   23356666665543    23356668999999999987  45 4566666665555444443333 3555555


Q ss_pred             HH-HHHHHHHcccc
Q 025758          212 GF-ATRLAEKSNRS  224 (248)
Q Consensus       212 ~~-~~~l~~~~~g~  224 (248)
                      ++ +..|++.|..+
T Consensus       865 dVdL~eiAk~cp~~  878 (953)
T KOG0736|consen  865 DVDLVEIAKKCPPN  878 (953)
T ss_pred             CcCHHHHHhhCCcC
Confidence            54 78888887654

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.53  E-value=5.3e-15  Score=122.88  Aligned_cols=159  Identities=15%  Similarity=0.300  Sum_probs=101.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc------ccc-eeeecccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI------DLE-LTTLSSAN   93 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~   93 (248)
                      +++.+...+++|.  .+.|.||+||||||++|+||+ |..+++|.+.++|..+....|..+.      .|. ++..++.+
T Consensus        18 ~l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAG-Le~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~   94 (338)
T COG3839          18 VLKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAG-LEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE   94 (338)
T ss_pred             eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence            4445555555553  477999999999999999998 8899999999999877644443332      111 12223344


Q ss_pred             eeeeCCCCcCcchhH---HHHHH-----HHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758           94 HVELSPSDAGFQDRY---VVQEV-----IKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (248)
Q Consensus        94 ~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~  152 (248)
                      ++.+.....+....+   .+.+.     +..+.+..|..+|+            ..+|+++++||| ..||......+..
T Consensus        95 Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~  174 (338)
T COG3839          95 NIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRS  174 (338)
T ss_pred             HhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHH
Confidence            444444433322211   11121     23344456667774            347999999999 8899887777777


Q ss_pred             HHHHhcCC--eeEEEEecCCCcccHHHhhhhhe
Q 025758          153 TMEKYSAS--CRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       153 ~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .|.+....  .++|..||+..+.+ ++-+|..+
T Consensus       175 ei~~lh~~l~~T~IYVTHDq~EAm-tladri~V  206 (338)
T COG3839         175 EIKKLHERLGTTTIYVTHDQVEAM-TLADRIVV  206 (338)
T ss_pred             HHHHHHHhcCCcEEEEcCCHHHHH-hhCCEEEE
Confidence            77665433  56788888866554 67777643

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=2.8e-13  Score=115.17  Aligned_cols=179  Identities=22%  Similarity=0.237  Sum_probs=124.1

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHhh----------c--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLVT----------E--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~~----------~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~   72 (248)
                      +.-++..|+|+.|.+.+++.+...+.          .  .....++|+||||+|||-+++++|.+....-          
T Consensus       145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atf----------  214 (428)
T KOG0740|consen  145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATF----------  214 (428)
T ss_pred             ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceE----------
Confidence            45677899999999999999888763          1  1122499999999999999999998752211          


Q ss_pred             eeeccCCcccccceeeecccceeeeCCCCc---CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------
Q 025758           73 WKIDAGSRNIDLELTTLSSANHVELSPSDA---GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------  143 (248)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------  143 (248)
                                            ..+.+++.   -....+.....+-.++.        ..+|.|++|||+|.+-      
T Consensus       215 ----------------------f~iSassLtsK~~Ge~eK~vralf~vAr--------~~qPsvifidEidslls~Rs~~  264 (428)
T KOG0740|consen  215 ----------------------FNISASSLTSKYVGESEKLVRALFKVAR--------SLQPSVIFIDEIDSLLSKRSDN  264 (428)
T ss_pred             ----------------------eeccHHHhhhhccChHHHHHHHHHHHHH--------hcCCeEEEechhHHHHhhcCCc
Confidence                                  12222211   11122334444444555        3478899999998762      


Q ss_pred             -----HHHHHHH-HHHHHH---hcCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758          144 -----REAQHSL-RRTMEK---YSASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF  213 (248)
Q Consensus       144 -----~~~~~~l-l~~le~---~~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~  213 (248)
                           +.....+ +...-.   ......+|.+||.+..+.++++.|+ ..+.++.|+.+....+++..+.+.+..+.+..
T Consensus       265 e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d  344 (428)
T KOG0740|consen  265 EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLD  344 (428)
T ss_pred             ccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHH
Confidence                 1112222 222211   1234567778899999999999999 47789999999999999999988877788888


Q ss_pred             HHHHHHHccc
Q 025758          214 ATRLAEKSNR  223 (248)
Q Consensus       214 ~~~l~~~~~g  223 (248)
                      ++.|++.++|
T Consensus       345 ~~~l~~~Teg  354 (428)
T KOG0740|consen  345 ISLLAKVTEG  354 (428)
T ss_pred             HHHHHHHhcC
Confidence            9999987654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.52  E-value=3.2e-14  Score=107.20  Aligned_cols=168  Identities=19%  Similarity=0.248  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC----Ccccccc--------e
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLE--------L   86 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~--------~   86 (248)
                      ..+++.++..++.|.  .+.++||+|+||||+.++|.. ...++.|++.+++.++..-..    .-++.+-        +
T Consensus        15 ~~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~-~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL   91 (223)
T COG2884          15 REALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYG-EERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL   91 (223)
T ss_pred             chhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHh-hhcCCCceEEECCeecccccccccchhhheeeeEeeecccc
Confidence            446666666666654  366999999999999999998 568999999999976541111    1111000        1


Q ss_pred             eeecccceeeeCCCCcCcchhH---HHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHH
Q 025758           87 TTLSSANHVELSPSDAGFQDRY---VVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (248)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~  145 (248)
                      .-.++.+++.+...-.+..+..   .+.+.++.     -+...|..+|+            .++|.+++-||| ..+||+
T Consensus        92 ~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~  171 (223)
T COG2884          92 PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD  171 (223)
T ss_pred             ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH
Confidence            1112333444333333333222   22233222     23345666663            458999999999 799999


Q ss_pred             HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCC
Q 025758          146 AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP  189 (248)
Q Consensus       146 ~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~  189 (248)
                      ....++.++++....++.|+++++...+..+.+.|+..+.-...
T Consensus       172 ~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl  215 (223)
T COG2884         172 LSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL  215 (223)
T ss_pred             HHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEE
Confidence            99999999999987777777777778888899888876655443

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.52  E-value=1e-14  Score=121.81  Aligned_cols=147  Identities=17%  Similarity=0.248  Sum_probs=88.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++.......           ...+++.+.
T Consensus         8 ~l~~vs~~i~~Ge--~~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~-----------~~~i~~~~q   73 (302)
T TIGR01188         8 AVDGVNFKVREGE--VFGFLGPNGAGKTTTIRMLTT-LLRPTSGTARVAGYDVVREPRKV-----------RRSIGIVPQ   73 (302)
T ss_pred             EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccCHHHH-----------HhhcEEecC
Confidence            3444555555553  356999999999999999998 67889999999886543110000           011222222


Q ss_pred             CcCcchhHH----------------------HHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758          101 DAGFQDRYV----------------------VQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus       101 ~~~~~~~~~----------------------~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                      ........+                      +.+.++.+     .......+|+            ..+|+++++||| .
T Consensus        74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~  153 (302)
T TIGR01188        74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT  153 (302)
T ss_pred             CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            222111111                      12222221     1111223332            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh
Q 025758          141 KLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      .||+.....+.+++.+.... ..+|++||+. .....+++|+.
T Consensus       154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~  195 (302)
T TIGR01188       154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIA  195 (302)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEE
Confidence            99999999999999887544 4566666654 44456666663

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.52  E-value=3.3e-13  Score=100.07  Aligned_cols=137  Identities=31%  Similarity=0.426  Sum_probs=87.9

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      +|++..+..+..++......+++++||+|+|||++++.++..+.......                             +
T Consensus         1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v-----------------------------~   51 (151)
T cd00009           1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPF-----------------------------L   51 (151)
T ss_pred             CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe-----------------------------E
Confidence            36777888888888765556799999999999999999999763111111                             1


Q ss_pred             eeCCCCcCcchhHHHHHHHH----HHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------CCeeEEE
Q 025758           96 ELSPSDAGFQDRYVVQEVIK----EMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------ASCRLIL  165 (248)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------~~~~~Il  165 (248)
                      .+..........  ......    .....    ......+.++++||++.+.......++..++...      ....+|+
T Consensus        52 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~  125 (151)
T cd00009          52 YLNASDLLEGLV--VAELFGHFLVRLLFE----LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIG  125 (151)
T ss_pred             EEehhhhhhhhH--HHHHhhhhhHhHHHH----hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEE
Confidence            111111000000  000000    00000    0013367899999999988778888888888763      4567888


Q ss_pred             EecCCC--cccHHHhhhh-heeeec
Q 025758          166 CCNSSS--KVTEAIRSRC-LNIRIN  187 (248)
Q Consensus       166 ~t~~~~--~~~~~l~sR~-~~i~~~  187 (248)
                      +++...  .+.+.+.+|+ ..+.++
T Consensus       126 ~~~~~~~~~~~~~~~~r~~~~i~~~  150 (151)
T cd00009         126 ATNRPLLGDLDRALYDRLDIRIVIP  150 (151)
T ss_pred             ecCccccCCcChhHHhhhccEeecC
Confidence            888776  7888999999 667665

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=8.7e-13  Score=104.26  Aligned_cols=174  Identities=20%  Similarity=0.331  Sum_probs=113.2

Q ss_pred             CCcccccccHHHHHHHHHHhh------------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758           10 KTLDQVIVHQDIAQNLKKLVT------------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~------------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      .+.+|+=|.++.++.|...+-            +=++| +++++||||+|||.+||++|.+-.   +...++.|      
T Consensus       168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~---aTFLKLAg------  238 (424)
T KOG0652|consen  168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN---ATFLKLAG------  238 (424)
T ss_pred             ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc---chHHHhcc------
Confidence            456777788887777766541            11223 499999999999999999997531   11111111      


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-----------HH
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE  145 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~~  145 (248)
                                     ++.+.+...    .+..-+++.+.. ++        +..|.||||||+|.++           .+
T Consensus       239 ---------------PQLVQMfIG----dGAkLVRDAFaL-AK--------EkaP~IIFIDElDAIGtKRfDSek~GDRE  290 (424)
T KOG0652|consen  239 ---------------PQLVQMFIG----DGAKLVRDAFAL-AK--------EKAPTIIFIDELDAIGTKRFDSEKAGDRE  290 (424)
T ss_pred             ---------------hHHHhhhhc----chHHHHHHHHHH-hh--------ccCCeEEEEechhhhccccccccccccHH
Confidence                           111111111    112224444442 22        4467899999999873           56


Q ss_pred             HHHHHHHHHHHh---c--CCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHH
Q 025758          146 AQHSLRRTMEKY---S--ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-ATR  216 (248)
Q Consensus       146 ~~~~ll~~le~~---~--~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~-~~~  216 (248)
                      .+..++++++..   +  ...++|..||..+-+.|++....   +.|.||-|+.+....|++-+.  +++++++++ ++.
T Consensus       291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHs--RKMnv~~DvNfeE  368 (424)
T KOG0652|consen  291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHS--RKMNVSDDVNFEE  368 (424)
T ss_pred             HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhh--hhcCCCCCCCHHH
Confidence            788888888764   2  34689999999999999987655   689999999999999988544  445555544 666


Q ss_pred             HHHHcc
Q 025758          217 LAEKSN  222 (248)
Q Consensus       217 l~~~~~  222 (248)
                      +++.++
T Consensus       369 LaRsTd  374 (424)
T KOG0652|consen  369 LARSTD  374 (424)
T ss_pred             Hhhccc
Confidence            665543

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.50  E-value=4.8e-12  Score=98.80  Aligned_cols=194  Identities=18%  Similarity=0.238  Sum_probs=133.0

Q ss_pred             cccCCCCCcccccccHHHHHHHHH----HhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            4 VDKYRPKTLDQVIVHQDIAQNLKK----LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~~~~~l~~----~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      +..|.|..+.+|+|-+..++.|-+    .++.-...|+||+|..|+|||++++++-.++......-              
T Consensus        51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL--------------  116 (287)
T COG2607          51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRL--------------  116 (287)
T ss_pred             CCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeE--------------
Confidence            456788999999997776665544    44333444599999999999999999998774433221              


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHH-HH---
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT-ME---  155 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~-le---  155 (248)
                                     +++..++.     .+.-.+++.+..        ...+-|++.|+...=..+.....+|. +|   
T Consensus       117 ---------------VEV~k~dl-----~~Lp~l~~~Lr~--------~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v  168 (287)
T COG2607         117 ---------------VEVDKEDL-----ATLPDLVELLRA--------RPEKFILFCDDLSFEEGDDAYKALKSALEGGV  168 (287)
T ss_pred             ---------------EEEcHHHH-----hhHHHHHHHHhc--------CCceEEEEecCCCCCCCchHHHHHHHHhcCCc
Confidence                           33333222     123334444443        44677999999865444444554544 33   


Q ss_pred             -HhcCCeeEEEEecCCCcccH----------------------HHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          156 -KYSASCRLILCCNSSSKVTE----------------------AIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       156 -~~~~~~~~Il~t~~~~~~~~----------------------~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                       ..+.|+.|.-+||....+.+                      .+.+|+ ..+.|.+++.++...++...+++.++.+++
T Consensus       169 e~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~  248 (287)
T COG2607         169 EGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISD  248 (287)
T ss_pred             ccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCH
Confidence             34667777777776532222                      344666 689999999999999999999999999987


Q ss_pred             HHHHHHH-----HHccccHHHHHHHHHHHhhhc
Q 025758          212 GFATRLA-----EKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       212 ~~~~~l~-----~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      +.++.=+     .+.+++.|.|-..++.+....
T Consensus       249 e~l~~eAl~WAt~rg~RSGR~A~QF~~~~~g~~  281 (287)
T COG2607         249 EELHAEALQWATTRGGRSGRVAWQFIRDLAGRL  281 (287)
T ss_pred             HHHHHHHHHHHHhcCCCccHhHHHHHHHHHhhh
Confidence            6655443     556788999999888887543

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.50  E-value=2.3e-14  Score=115.55  Aligned_cols=165  Identities=17%  Similarity=0.278  Sum_probs=103.4

Q ss_pred             ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--Ccc-------cccc-e
Q 025758           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--SRN-------IDLE-L   86 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~-~   86 (248)
                      |.-.+...+.-.++.|+.-.  |.||+|+||||+.|+||+ |..++.|.|.+++..+.....  .+.       ..|. +
T Consensus        13 ~~~~a~~di~l~i~~Ge~va--LlGpSGaGKsTlLRiIAG-Le~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF   89 (345)
T COG1118          13 GAFGALDDISLDIKSGELVA--LLGPSGAGKSTLLRIIAG-LETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF   89 (345)
T ss_pred             ccccccccceeeecCCcEEE--EECCCCCcHHHHHHHHhC-cCCCCCceEEECCEeccchhccchhhcceeEEEechhhc
Confidence            33334445555556665555  999999999999999998 899999999999985431111  111       1111 1


Q ss_pred             eeecccceeeeCCCCc--Cc---chhHHHHHHH-----HHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           87 TTLSSANHVELSPSDA--GF---QDRYVVQEVI-----KEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        87 ~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~-----~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      ..+++.+++.+...-.  ..   .....+.+.+     ..++..+|..+|+            .-+|+|++|||| ..+|
T Consensus        90 ~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALD  169 (345)
T COG1118          90 PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD  169 (345)
T ss_pred             ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhh
Confidence            2223445544433211  11   1122233332     3456667778875            348999999999 7888


Q ss_pred             HHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhheee
Q 025758          144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ......|.+-+.+...  +...+++|++..+.. .+.+|+.++.
T Consensus       170 a~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~-~ladrvvvl~  212 (345)
T COG1118         170 AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL-ELADRVVVLN  212 (345)
T ss_pred             HHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHH-hhcceEEEec
Confidence            8777776666665543  367889999877665 6777775443

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.49  E-value=2.1e-13  Score=106.70  Aligned_cols=147  Identities=18%  Similarity=0.205  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc--CCCcccceecccceeeccCCcccccceeeecccceeee
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL   97 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (248)
                      .+.+.+...+.+|.  .+.|.||||+||||+++++++ +.  .+..|.+.+++.++...             .....+.+
T Consensus        23 ~~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~G-l~~~~~~~G~i~~~g~~~~~~-------------~~~~~i~~   86 (194)
T cd03213          23 QLLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAG-RRTGLGVSGEVLINGRPLDKR-------------SFRKIIGY   86 (194)
T ss_pred             cceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCCceEEEECCEeCchH-------------hhhheEEE
Confidence            34555555555543  467999999999999999998 66  78889998888654310             01112444


Q ss_pred             CCCCcCcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeE
Q 025758           98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRL  163 (248)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~  163 (248)
                      .+.........++.+.+.......  .+|+            ..+|+++++||| ..||......+++.+++... ...+
T Consensus        87 ~~q~~~~~~~~t~~~~i~~~~~~~--~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ti  164 (194)
T cd03213          87 VPQDDILHPTLTVRETLMFAAKLR--GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI  164 (194)
T ss_pred             ccCcccCCCCCcHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            444433333333444333211110  2221            347899999999 89999999999999988754 4577


Q ss_pred             EEEecCCCcccHHHhhhhhee
Q 025758          164 ILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       164 Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      |++|++.......+.+|+.++
T Consensus       165 ii~sh~~~~~~~~~~d~v~~l  185 (194)
T cd03213         165 ICSIHQPSSEIFELFDKLLLL  185 (194)
T ss_pred             EEEecCchHHHHHhcCEEEEE
Confidence            888888765555677776544

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=1.2e-13  Score=117.55  Aligned_cols=157  Identities=13%  Similarity=0.262  Sum_probs=94.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~   92 (248)
                      +++.+...+..|.  .+.|.||||+||||++++||+ +..+.+|.+.++|..+....+... ...+        ...++.
T Consensus        19 ~l~~vsl~i~~Ge--~~~llG~sGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~~~~~~~r-~ig~v~Q~~~lfp~~tv~   94 (356)
T PRK11650         19 VIKGIDLDVADGE--FIVLVGPSGCGKSTLLRMVAG-LERITSGEIWIGGRVVNELEPADR-DIAMVFQNYALYPHMSVR   94 (356)
T ss_pred             EEeeeeEEEcCCC--EEEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHHC-CEEEEeCCccccCCCCHH
Confidence            3444555555553  366999999999999999999 778999999999976542211111 0110        011112


Q ss_pred             ceeeeCCCCcCcch---hHHHHHHHH-----HHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           93 NHVELSPSDAGFQD---RYVVQEVIK-----EMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        93 ~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      +++.+.....+...   ...+.+.++     .+....+..+|+            ..+|+++++||| ..||...+..+.
T Consensus        95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~  174 (356)
T PRK11650         95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR  174 (356)
T ss_pred             HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            22222111111111   111222222     223334445553            458999999999 899999999999


Q ss_pred             HHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758          152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      +.+.+...  +..+|++||+...+ ..+.+|+.
T Consensus       175 ~~l~~l~~~~g~tii~vTHd~~ea-~~l~D~i~  206 (356)
T PRK11650        175 LEIQRLHRRLKTTSLYVTHDQVEA-MTLADRVV  206 (356)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence            99987654  46788888876554 46667764

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.47  E-value=2.9e-12  Score=116.77  Aligned_cols=222  Identities=15%  Similarity=0.121  Sum_probs=122.5

Q ss_pred             cccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee----eccCCccccccee
Q 025758           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK----IDAGSRNIDLELT   87 (248)
Q Consensus        12 ~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   87 (248)
                      |.+++||+.++..|...+-+++..+++|.|++|+||||+|++++..+ .+-. .  ..+..|.    ..|+.|..|....
T Consensus         3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~l-p~~~-~--~~~~~~~c~p~~~~~~~~~~~~~~   78 (633)
T TIGR02442         3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALL-PPID-V--VAGCPFSCDPDDPEEWCEECRRKY   78 (633)
T ss_pred             cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhC-CCce-e--ccCCcCCCCCCCccccChhhhhcc
Confidence            67899999999999888877777779999999999999999999844 2100 0  0000110    0011121111111


Q ss_pred             eec---ccceeeeCCCCc--CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc----
Q 025758           88 TLS---SANHVELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----  158 (248)
Q Consensus        88 ~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----  158 (248)
                      ...   ...++.+.....  .......+...+..-......++-...+..+++|||++.|++..++.|++.+++..    
T Consensus        79 ~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~  158 (633)
T TIGR02442        79 RPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE  158 (633)
T ss_pred             cccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence            111   111122211110  01111111211110000000111123456799999999999999999999998642    


Q ss_pred             ---------CCeeEEEEecCC-CcccHHHhhhh-heeeecCCC-HHHHHHHHHHHHH-----------------------
Q 025758          159 ---------ASCRLILCCNSS-SKVTEAIRSRC-LNIRINSPT-EEQIVKVLEFIAK-----------------------  203 (248)
Q Consensus       159 ---------~~~~~Il~t~~~-~~~~~~l~sR~-~~i~~~~~~-~~~~~~il~~~~~-----------------------  203 (248)
                               ....+|.++|.. ..+.++|.+|+ ..+.++++. .++..+++.....                       
T Consensus       159 r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i  238 (633)
T TIGR02442       159 REGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRI  238 (633)
T ss_pred             ECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHH
Confidence                     122344444422 25778999999 456666554 3443444432111                       


Q ss_pred             ------HcCCCCCHHHHHHHHHHcc---c-cHHHHHHHHHHHhh
Q 025758          204 ------KEGLQLPSGFATRLAEKSN---R-SLRRAILSFETCRV  237 (248)
Q Consensus       204 ------~~~~~~~~~~~~~l~~~~~---g-~~r~~~~~l~~~~~  237 (248)
                            ...+.++++++.++++.+.   - ++|..+.++..+..
T Consensus       239 ~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara  282 (633)
T TIGR02442       239 ARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARA  282 (633)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence                  0246788888888886652   1 46777776665543

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.47  E-value=4.8e-12  Score=106.64  Aligned_cols=193  Identities=18%  Similarity=0.159  Sum_probs=120.3

Q ss_pred             ccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccc
Q 025758           15 VIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA   92 (248)
Q Consensus        15 lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (248)
                      ++|.....+.+...+..  ....+|+|+|++||||+++|++|-..-.......+.+++                      
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc----------------------   58 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNC----------------------   58 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeC----------------------
Confidence            45666555555444432  223349999999999999999998633222222222222                      


Q ss_pred             ceeeeCCCCcCcchhHHHH-HHHHHHH------hcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-------
Q 025758           93 NHVELSPSDAGFQDRYVVQ-EVIKEMA------KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------  158 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-------  158 (248)
                             ....  + .... +.+....      .....++....+...++|||++.|+...|..|++++++..       
T Consensus        59 -------~~~~--~-~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~  128 (329)
T TIGR02974        59 -------AALS--E-NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGS  128 (329)
T ss_pred             -------CCCC--h-HHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCC
Confidence                   1100  0 0000 0000000      0000111123356789999999999999999999998642       


Q ss_pred             ----CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCC--HHHHHHHHHHHHHH----cC----CCCCHHHHH
Q 025758          159 ----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPT--EEQIVKVLEFIAKK----EG----LQLPSGFAT  215 (248)
Q Consensus       159 ----~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~--~~~~~~il~~~~~~----~~----~~~~~~~~~  215 (248)
                          .+.++|++|+...       .+.++|..|+  ..|.+||+.  .+++..++...+.+    .+    ..++++++.
T Consensus       129 ~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~  208 (329)
T TIGR02974       129 QTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQARE  208 (329)
T ss_pred             ceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHH
Confidence                2357888877542       3557788887  568888887  45666555554332    22    358999999


Q ss_pred             HHHHHc-cccHHHHHHHHHHHhhhc
Q 025758          216 RLAEKS-NRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       216 ~l~~~~-~g~~r~~~~~l~~~~~~~  239 (248)
                      .|.... .||+|++.|.++.++...
T Consensus       209 ~L~~y~WPGNvrEL~n~i~~~~~~~  233 (329)
T TIGR02974       209 QLLEYHWPGNVRELKNVVERSVYRH  233 (329)
T ss_pred             HHHhCCCCchHHHHHHHHHHHHHhC
Confidence            999886 999999999999988754

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.47  E-value=2.5e-13  Score=104.41  Aligned_cols=142  Identities=20%  Similarity=0.330  Sum_probs=86.2

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (248)
                      .+.+...+.+|.  .+.+.||||+||||+++++++ +..+..|.+.+++........           .....+.+.+..
T Consensus        16 l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~~~-----------~~~~~i~~~~q~   81 (173)
T cd03230          16 LDDISLTVEKGE--IYGLLGPNGAGKTTLIKIILG-LLKPDSGEIKVLGKDIKKEPE-----------EVKRRIGYLPEE   81 (173)
T ss_pred             eeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcccchH-----------hhhccEEEEecC
Confidence            334444444442  377999999999999999998 667888999888865431100           001123333333


Q ss_pred             cCcchhHHHHHHHH---------HHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCC
Q 025758          102 AGFQDRYVVQEVIK---------EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSS  170 (248)
Q Consensus       102 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~  170 (248)
                      .......++.+.+.         .++...      ..+|+++++||| ..+|......+.+.+++.... ..+|++|++.
T Consensus        82 ~~~~~~~tv~~~~~LS~G~~qrv~laral------~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~  155 (173)
T cd03230          82 PSLYENLTVRENLKLSGGMKQRLALAQAL------LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL  155 (173)
T ss_pred             CccccCCcHHHHhhcCHHHHHHHHHHHHH------HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence            22222212222211         000000      237889999999 899999999999999987544 5567776665


Q ss_pred             CcccHHHhhhhhee
Q 025758          171 SKVTEAIRSRCLNI  184 (248)
Q Consensus       171 ~~~~~~l~sR~~~i  184 (248)
                      . ....+.+|+..+
T Consensus       156 ~-~~~~~~d~i~~l  168 (173)
T cd03230         156 E-EAERLCDRVAIL  168 (173)
T ss_pred             H-HHHHhCCEEEEE
Confidence            4 444666666544

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.47  E-value=4.8e-14  Score=117.82  Aligned_cols=149  Identities=19%  Similarity=0.267  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeC
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (248)
                      ..+++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.+.........           ..+++.
T Consensus        17 ~~~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~-----------~~i~~v   82 (303)
T TIGR01288        17 KVVVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLG-MISPDRGKITVLGEPVPSRARLAR-----------VAIGVV   82 (303)
T ss_pred             eEEEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECcccHHHHh-----------hcEEEE
Confidence            335556666666553  366999999999999999998 668889999998865431100000           011111


Q ss_pred             CCCcCcchhH----------------------HHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC
Q 025758           99 PSDAGFQDRY----------------------VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV  139 (248)
Q Consensus        99 ~~~~~~~~~~----------------------~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~  139 (248)
                      +.........                      .+.+.++.+     .......+|+            ..+|+++++|||
T Consensus        83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP  162 (303)
T TIGR01288        83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP  162 (303)
T ss_pred             eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            1111111111                      111122111     1111223332            458999999999


Q ss_pred             -CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh
Q 025758          140 -DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       140 -d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                       ..||+.....+++.+.+.... ..+|++||+.. ....+.+|+.
T Consensus       163 t~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~  206 (303)
T TIGR01288       163 TTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLC  206 (303)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence             899999999999999887543 45666666654 4456667663

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.46  E-value=2.5e-13  Score=113.39  Aligned_cols=148  Identities=18%  Similarity=0.215  Sum_probs=90.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +++.+...+.+|..  +.|.||||+||||+++++++ +..+.+|.+.++|.++......           ....+++.+.
T Consensus        17 ~l~~is~~i~~Gei--~~l~G~NGaGKTTLl~~l~G-l~~~~~G~i~i~g~~~~~~~~~-----------~~~~ig~~~q   82 (301)
T TIGR03522        17 ALDEVSFEAQKGRI--VGFLGPNGAGKSTTMKIITG-YLPPDSGSVQVCGEDVLQNPKE-----------VQRNIGYLPE   82 (301)
T ss_pred             EEEEeEEEEeCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccChHH-----------HHhceEEecC
Confidence            34444444544433  66999999999999999998 7789999999988755311100           0111333333


Q ss_pred             CcCcchhHHHHHHH----------------------HHH-----HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758          101 DAGFQDRYVVQEVI----------------------KEM-----AKNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus       101 ~~~~~~~~~~~~~~----------------------~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                      .....+..++.+.+                      +.+     .......+|+            ..+|+++++||| .
T Consensus        83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~  162 (301)
T TIGR03522        83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT  162 (301)
T ss_pred             CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            22222222222222                      111     0111112221            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .||+..+..+++++.+...+..+|++||+. ...+.+++|+.+
T Consensus       163 gLD~~~~~~l~~~l~~~~~~~tiii~sH~l-~~~~~~~d~i~~  204 (301)
T TIGR03522       163 GLDPNQLVEIRNVIKNIGKDKTIILSTHIM-QEVEAICDRVII  204 (301)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEEcCCH-HHHHHhCCEEEE
Confidence            999999999999999886555555555554 455567777643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.46  E-value=3.5e-13  Score=106.13  Aligned_cols=150  Identities=15%  Similarity=0.159  Sum_probs=93.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC---CCcccceecccceeeccCCcccccceeeecccceeee
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG---PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL   97 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (248)
                      +.+.+...+.+|.  .+.+.||||+||||+++++++ +..   +.+|.+.+++.+.......           ....+.+
T Consensus        22 il~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~~~~G~i~i~g~~~~~~~~~-----------~~~~i~~   87 (202)
T cd03233          22 ILKDFSGVVKPGE--MVLVLGRPGSGCSTLLKALAN-RTEGNVSVEGDIHYNGIPYKEFAEK-----------YPGEIIY   87 (202)
T ss_pred             eeeeEEEEECCCc--EEEEECCCCCCHHHHHHHhcc-cCCCCCCcceEEEECCEECccchhh-----------hcceEEE
Confidence            3344444444443  477999999999999999999 555   6789998888654311100           0112344


Q ss_pred             CCCCcCcchhHHHHHHHHHHH----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-
Q 025758           98 SPSDAGFQDRYVVQEVIKEMA----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-  159 (248)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-  159 (248)
                      .+.........++.+.+....    ......++.            ..+|+++++||| ..+|+..+..+.+++++... 
T Consensus        88 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~  167 (202)
T cd03233          88 VSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV  167 (202)
T ss_pred             EecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence            343333333334444443221    122223332            347899999999 89999999999999998754 


Q ss_pred             -CeeEEEEecCCCcccHHHhhhhhee
Q 025758          160 -SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       160 -~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                       ...+|+++++.......+.+|+..+
T Consensus       168 ~~~t~ii~~~h~~~~~~~~~d~i~~l  193 (202)
T cd03233         168 LKTTTFVSLYQASDEIYDLFDKVLVL  193 (202)
T ss_pred             CCCEEEEEEcCCHHHHHHhCCeEEEE
Confidence             3456777777655555676776443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=4.3e-13  Score=106.26  Aligned_cols=183  Identities=17%  Similarity=0.283  Sum_probs=119.6

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhc-----------C--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccce
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK   67 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~-----------~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~   67 (248)
                      |+-+|.-...|..|+=|.++.++.++..++-           |  .+.+++++||||+|||.+||++|..   .++-.++
T Consensus       165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr---tdacfir  241 (435)
T KOG0729|consen  165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR---TDACFIR  241 (435)
T ss_pred             EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc---cCceEEe
Confidence            4555666667889988999999999887641           1  2234999999999999999999963   2322222


Q ss_pred             ecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC----
Q 025758           68 VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----  143 (248)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----  143 (248)
                      +-|....                    -.|..     .....+++++.- +.        ...-.+|++||+|.++    
T Consensus       242 vigselv--------------------qkyvg-----egarmvrelf~m-ar--------tkkaciiffdeidaiggarf  287 (435)
T KOG0729|consen  242 VIGSELV--------------------QKYVG-----EGARMVRELFEM-AR--------TKKACIIFFDEIDAIGGARF  287 (435)
T ss_pred             ehhHHHH--------------------HHHhh-----hhHHHHHHHHHH-hc--------ccceEEEEeeccccccCccc
Confidence            2111100                    00111     122235554442 22        2345689999998773    


Q ss_pred             -------HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCC
Q 025758          144 -------REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQ  208 (248)
Q Consensus       144 -------~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~  208 (248)
                             .+.+..+++++...     ..|.++++.||.+..+.++|..-.   ..+.|..|+-+....|+.-+..  .++
T Consensus       288 ddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihak--sms  365 (435)
T KOG0729|consen  288 DDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK--SMS  365 (435)
T ss_pred             cCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecc--ccc
Confidence                   45678888888753     567899999999999999998755   5799999998888877764332  333


Q ss_pred             CCHHH-HHHHHHHcc
Q 025758          209 LPSGF-ATRLAEKSN  222 (248)
Q Consensus       209 ~~~~~-~~~l~~~~~  222 (248)
                      ++.+. ++.|+..|.
T Consensus       366 verdir~ellarlcp  380 (435)
T KOG0729|consen  366 VERDIRFELLARLCP  380 (435)
T ss_pred             cccchhHHHHHhhCC
Confidence            33333 445555543

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.46  E-value=9.7e-14  Score=107.93  Aligned_cols=157  Identities=15%  Similarity=0.179  Sum_probs=108.1

Q ss_pred             ccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758           15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH   94 (248)
Q Consensus        15 lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (248)
                      -+|.-++++.+...++.|.+  +.+.|+||+||||++++|++ +..+.+|.+..+|.++....+...         ....
T Consensus        12 ~YG~~~~L~gvsl~v~~Gei--v~llG~NGaGKTTlLkti~G-l~~~~~G~I~~~G~dit~~p~~~r---------~r~G   79 (237)
T COG0410          12 GYGKIQALRGVSLEVERGEI--VALLGRNGAGKTTLLKTIMG-LVRPRSGRIIFDGEDITGLPPHER---------ARLG   79 (237)
T ss_pred             cccceeEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeeEEECCeecCCCCHHHH---------HhCC
Confidence            35666777777777777654  55999999999999999999 667889999999987763333221         1233


Q ss_pred             eeeCCCCcCcchhHHHHHHHHHHHh---------------------------cCCCcCCC------------CCCeeEEE
Q 025758           95 VELSPSDAGFQDRYVVQEVIKEMAK---------------------------NRPIDTKG------------KRGFKVLV  135 (248)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~------------~~~~~vii  135 (248)
                      +.+.|+.....+..++.|.+.--..                           .....+|+            ..+|++++
T Consensus        80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL  159 (237)
T COG0410          80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL  159 (237)
T ss_pred             eEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE
Confidence            6677777766666666666442111                           11113332            45899999


Q ss_pred             EeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758          136 LNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       136 iDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      |||| ..+.|.....+++.|.+..+. +..|+.....-...-.+.+|..+
T Consensus       160 LDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yv  209 (237)
T COG0410         160 LDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYV  209 (237)
T ss_pred             ecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEE
Confidence            9999 799999999999999988754 33444444444445567788743

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.46  E-value=3.3e-13  Score=104.56  Aligned_cols=144  Identities=18%  Similarity=0.229  Sum_probs=87.5

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCc
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (248)
                      +.+...+.+|.  .+.+.||||+||||+++++++ +..+.+|.+.++|.++....+..         .....+.+.+.+.
T Consensus        17 ~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~---------~~~~~i~~~~q~~   84 (182)
T cd03215          17 RDVSFEVRAGE--IVGIAGLVGNGQTELAEALFG-LRPPASGEITLDGKPVTRRSPRD---------AIRAGIAYVPEDR   84 (182)
T ss_pred             cceEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCccCHHH---------HHhCCeEEecCCc
Confidence            33333444442  477999999999999999998 66888999999886543111000         0011233433331


Q ss_pred             ---CcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEE
Q 025758          103 ---GFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLIL  165 (248)
Q Consensus       103 ---~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il  165 (248)
                         ......++.+.+.....     +|.            ..+|+++++||| ..+|+.....+.+++.+... +..+|+
T Consensus        85 ~~~~~~~~~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii  159 (182)
T cd03215          85 KREGLVLDLSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL  159 (182)
T ss_pred             ccCcccCCCcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence               12222233333322110     110            347899999999 89999999999999988744 356666


Q ss_pred             EecCCCcccHHHhhhhhee
Q 025758          166 CCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       166 ~t~~~~~~~~~l~sR~~~i  184 (248)
                      +||+.. ....+.+|+..+
T Consensus       160 ~sh~~~-~~~~~~d~v~~l  177 (182)
T cd03215         160 ISSELD-ELLGLCDRILVM  177 (182)
T ss_pred             EeCCHH-HHHHhCCEEEEe
Confidence            666643 444566665443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.45  E-value=1.5e-13  Score=106.15  Aligned_cols=142  Identities=13%  Similarity=0.219  Sum_probs=84.4

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (248)
                      .+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.+++.+.....+...        .....+.+.+..
T Consensus        16 l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~--------~~~~~i~~~~q~   84 (178)
T cd03229          16 LNDVSLNIEAGE--IVALLGPSGSGKSTLLRCIAG-LEEPDSGSILIDGEDLTDLEDELP--------PLRRRIGMVFQD   84 (178)
T ss_pred             EeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccchhHH--------HHhhcEEEEecC
Confidence            334444444443  366999999999999999998 668888999988865431110000        001112222222


Q ss_pred             cC--------------cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC--eeEE
Q 025758          102 AG--------------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS--CRLI  164 (248)
Q Consensus       102 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~--~~~I  164 (248)
                      ..              .+.++..+-.+....         ..+|+++++||| ..+|+..+..+.+++.+....  ..+|
T Consensus        85 ~~~~~~~t~~~~l~~~lS~G~~qr~~la~al---------~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii  155 (178)
T cd03229          85 FALFPHLTVLENIALGLSGGQQQRVALARAL---------AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVV  155 (178)
T ss_pred             CccCCCCCHHHheeecCCHHHHHHHHHHHHH---------HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence            21              111111111111111         237789999999 899999999999999887553  5677


Q ss_pred             EEecCCCcccHHHhhhhhee
Q 025758          165 LCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       165 l~t~~~~~~~~~l~sR~~~i  184 (248)
                      ++||+.+. .+.+.+++..+
T Consensus       156 i~sH~~~~-~~~~~d~i~~l  174 (178)
T cd03229         156 LVTHDLDE-AARLADRVVVL  174 (178)
T ss_pred             EEeCCHHH-HHHhcCEEEEE
Confidence            77776543 34555655433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.45  E-value=5.9e-12  Score=109.05  Aligned_cols=193  Identities=12%  Similarity=0.133  Sum_probs=110.1

Q ss_pred             cccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccc
Q 025758           14 QVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN   93 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (248)
                      .++|++++++.+...+..+  .|++|.||||+|||++|++++..+....  ...  +             ..        
T Consensus        21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~--~F~--~-------------~~--------   73 (498)
T PRK13531         21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNAR--AFE--Y-------------LM--------   73 (498)
T ss_pred             hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccC--cce--e-------------ee--------
Confidence            3578888888888777554  4799999999999999999998542211  000  0             00        


Q ss_pred             eeee-CCCCcCcchhHHHHHHH--HHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---------CCe
Q 025758           94 HVEL-SPSDAGFQDRYVVQEVI--KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------ASC  161 (248)
Q Consensus        94 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---------~~~  161 (248)
                       ..+ .+++  ..+...+...-  ..+....+..   -....++++||+..+++..++.|+..+++..         -..
T Consensus        74 -~~fttp~D--LfG~l~i~~~~~~g~f~r~~~G~---L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~  147 (498)
T PRK13531         74 -TRFSTPEE--VFGPLSIQALKDEGRYQRLTSGY---LPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPM  147 (498)
T ss_pred             -eeecCcHH--hcCcHHHhhhhhcCchhhhcCCc---cccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCC
Confidence             011 0100  00000001000  0000000000   1123499999999999999999999997642         112


Q ss_pred             eEEEEecC-CC---cccHHHhhhh-heeeecCCC-HHHHHHHHHHHHH-----------------------HcCCCCCHH
Q 025758          162 RLILCCNS-SS---KVTEAIRSRC-LNIRINSPT-EEQIVKVLEFIAK-----------------------KEGLQLPSG  212 (248)
Q Consensus       162 ~~Il~t~~-~~---~~~~~l~sR~-~~i~~~~~~-~~~~~~il~~~~~-----------------------~~~~~~~~~  212 (248)
                      +||+++++ .+   ...+++.+|+ ..+.+++++ .++..++|.....                       -..+.+++.
T Consensus       148 rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~  227 (498)
T PRK13531        148 RLLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDH  227 (498)
T ss_pred             cEEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHH
Confidence            35555443 33   2456899999 468888887 4555777754211                       024556777


Q ss_pred             HHHHHHHHcc----------ccHHHHHHHHHHHhhhc
Q 025758          213 FATRLAEKSN----------RSLRRAILSFETCRVQQ  239 (248)
Q Consensus       213 ~~~~l~~~~~----------g~~r~~~~~l~~~~~~~  239 (248)
                      ++++|.+...          -+.|..+.++..+...+
T Consensus       228 v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A  264 (498)
T PRK13531        228 VFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASA  264 (498)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHH
Confidence            7777764421          24566666555554433

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.45  E-value=9.9e-14  Score=110.20  Aligned_cols=159  Identities=19%  Similarity=0.303  Sum_probs=90.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------eccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~   92 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.++....... ....+..        .+..
T Consensus        15 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~-~~i~~v~q~~~~~~~~tv~   90 (213)
T cd03259          15 ALDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAG-LERPDSGEILIDGRDVTGVPPER-RNIGMVFQDYALFPHLTVA   90 (213)
T ss_pred             eecceeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcCcCchhh-ccEEEEcCchhhccCCcHH
Confidence            4455555555553  366999999999999999998 66888999998886543111100 0000000        0001


Q ss_pred             ceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           93 NHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        93 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      +++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....+.
T Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~  170 (213)
T cd03259          91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR  170 (213)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence            11111000000000   01122222221     1122223442            458999999999 899999999999


Q ss_pred             HHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +++.+...  +..+|++||+.. ....+.+|+..+
T Consensus       171 ~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l  204 (213)
T cd03259         171 EELKELQRELGITTIYVTHDQE-EALALADRIAVM  204 (213)
T ss_pred             HHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEE
Confidence            99988643  456777777654 344666776544

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.45  E-value=3.6e-13  Score=103.28  Aligned_cols=142  Identities=18%  Similarity=0.321  Sum_probs=85.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +.+.+...+.+|.  .+.+.||||+||||+++++++ +..+.+|.+.+++..........          ....+.+.+.
T Consensus        17 ~l~~i~~~i~~G~--~~~l~G~nGsGKstLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~----------~~~~i~~~~~   83 (171)
T cd03228          17 VLKDVSLTIKPGE--KVAIVGPSGSGKSTLLKLLLR-LYDPTSGEILIDGVDLRDLDLES----------LRKNIAYVPQ   83 (171)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHHc-CCCCCCCEEEECCEEhhhcCHHH----------HHhhEEEEcC
Confidence            3444444454443  367999999999999999999 66788898888886443110000          0011222222


Q ss_pred             CcCcchhHHHHHHH--------HHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758          101 DAGFQDRYVVQEVI--------KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (248)
Q Consensus       101 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~  171 (248)
                      ...... .++.+.+        -.++..-      ..+|+++++||| ..+|+.....+.+++.+...+..+|++||+..
T Consensus        84 ~~~~~~-~t~~e~lLS~G~~~rl~la~al------~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~  156 (171)
T cd03228          84 DPFLFS-GTIRENILSGGQRQRIAIARAL------LRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS  156 (171)
T ss_pred             Cchhcc-chHHHHhhCHHHHHHHHHHHHH------hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence            211111 1111110        0011100      237789999999 79999999999999988765566777777766


Q ss_pred             cccHHHhhhhhee
Q 025758          172 KVTEAIRSRCLNI  184 (248)
Q Consensus       172 ~~~~~l~sR~~~i  184 (248)
                      .+ +. .+|+..+
T Consensus       157 ~~-~~-~d~~~~l  167 (171)
T cd03228         157 TI-RD-ADRIIVL  167 (171)
T ss_pred             HH-Hh-CCEEEEE
Confidence            55 34 5555443

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.45  E-value=2.8e-13  Score=104.57  Aligned_cols=139  Identities=15%  Similarity=0.166  Sum_probs=84.7

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (248)
                      .+.+...+.+|.  .+.+.||||+||||+++++++ +..+.+|.+.+++...... ...          ....+.+.+..
T Consensus        18 l~~i~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~-~~~----------~~~~i~~~~q~   83 (178)
T cd03247          18 LKNLSLELKQGE--KIALLGRSGSGKSTLLQLLTG-DLKPQQGEITLDGVPVSDL-EKA----------LSSLISVLNQR   83 (178)
T ss_pred             eEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCEEHHHH-HHH----------HHhhEEEEccC
Confidence            334444444443  467999999999999999998 6678889998888643210 000          00112222221


Q ss_pred             cCcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEec
Q 025758          102 AGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCN  168 (248)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~  168 (248)
                      ..... .++.+.+       ...+++            ..+|+++++||| ..+|......+.+.+.+...+..+|++|+
T Consensus        84 ~~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh  155 (178)
T cd03247          84 PYLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH  155 (178)
T ss_pred             Ceeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence            11111 1111111       001110            237889999999 89999999999999988765667888888


Q ss_pred             CCCcccHHHhhhhhee
Q 025758          169 SSSKVTEAIRSRCLNI  184 (248)
Q Consensus       169 ~~~~~~~~l~sR~~~i  184 (248)
                      +...+ + ..+|+..+
T Consensus       156 ~~~~~-~-~~d~~~~l  169 (178)
T cd03247         156 HLTGI-E-HMDKILFL  169 (178)
T ss_pred             CHHHH-H-hCCEEEEE
Confidence            87654 3 35665443

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.45  E-value=4.1e-13  Score=106.41  Aligned_cols=146  Identities=20%  Similarity=0.294  Sum_probs=81.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee------eecccceeeeCCCCcCcch---
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT------TLSSANHVELSPSDAGFQD---  106 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---  106 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.++|.++..... ....+-.+      ..+..+++.+.....+...   
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~-~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~  105 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILG-IILPDSGEVLFDGKPLDIAAR-NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA  105 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCCchhHHHH-ccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHH
Confidence            367999999999999999998 668889999988865421000 00000000      0011111111000000000   


Q ss_pred             hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEe
Q 025758          107 RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCC  167 (248)
Q Consensus       107 ~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t  167 (248)
                      ...+.+.++.+     ....+..+|+            ..+|+++++||| ..+|+.....+.+.+++... +..+|++|
T Consensus       106 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~s  185 (210)
T cd03269         106 RRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILST  185 (210)
T ss_pred             HHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence            01122222221     1112223332            448899999999 79999999999999988754 34566666


Q ss_pred             cCCCcccHHHhhhhhee
Q 025758          168 NSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       168 ~~~~~~~~~l~sR~~~i  184 (248)
                      ++.. ....+.+|+..+
T Consensus       186 H~~~-~~~~~~d~i~~l  201 (210)
T cd03269         186 HQME-LVEELCDRVLLL  201 (210)
T ss_pred             CCHH-HHHHhhhEEEEE
Confidence            6644 444566666444

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.45  E-value=3.7e-14  Score=110.71  Aligned_cols=163  Identities=15%  Similarity=0.205  Sum_probs=105.0

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-----------ccc-
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-----------NID-   83 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~-   83 (248)
                      +|.+.+++.+...+..|++..  +.||+|+||||+.|.+.+ +..|+.|++.++|.++..-+...           ++. 
T Consensus        18 fG~~~Ild~v~l~V~~Gei~~--iiGgSGsGKStlLr~I~G-ll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g   94 (263)
T COG1127          18 FGDRVILDGVDLDVPRGEILA--ILGGSGSGKSTLLRLILG-LLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG   94 (263)
T ss_pred             cCCEEEecCceeeecCCcEEE--EECCCCcCHHHHHHHHhc-cCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence            567777777877777776655  999999999999999998 78999999999997654111111           000 


Q ss_pred             cceeeecccceeeeCCCCcCcchhHHHHHH----HHH------HHhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           84 LELTTLSSANHVELSPSDAGFQDRYVVQEV----IKE------MAKNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                      .-+..+++.+++.+..-+...-+...+++.    ++.      ..+..|.++|+            .-+|.++++||| .
T Consensus        95 ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPts  174 (263)
T COG1127          95 ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTS  174 (263)
T ss_pred             ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCC
Confidence            001222333344332222111111112222    111      14455666664            348999999999 7


Q ss_pred             CCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758          141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      ++||-....+.++|.+...  ..++|++||+...+. ++.+|+.
T Consensus       175 GLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~-~i~Drv~  217 (263)
T COG1127         175 GLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLL-TIADRVA  217 (263)
T ss_pred             CCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHH-hhhceEE
Confidence            9999888888888877644  357888888876655 7778874

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.45  E-value=2.9e-13  Score=107.90  Aligned_cols=159  Identities=19%  Similarity=0.326  Sum_probs=91.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-------cccccceee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-------RNIDLELTT-----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-----   88 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.+++.++....+.       ....+-.+.     
T Consensus        19 il~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   95 (218)
T cd03255          19 ALKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGG-LDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP   95 (218)
T ss_pred             EEeeeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhC-CcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence            4445555555553  366999999999999999998 6678889999888654311100       000000000     


Q ss_pred             -ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           89 -LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        89 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                       .++.+++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..
T Consensus        96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~  175 (218)
T cd03255          96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET  175 (218)
T ss_pred             CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence             011111111000001000   11122222222     1122233442            458999999999 8999999


Q ss_pred             HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+.+++.+...  +..+|++||+...+ . +.+|+..+
T Consensus       176 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~-~-~~d~v~~l  213 (218)
T cd03255         176 GKEVMELLRELNKEAGTTIVVVTHDPELA-E-YADRIIEL  213 (218)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEECCHHHH-h-hhcEEEEe
Confidence            9999999988754  46788888887654 3 66666544

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.45  E-value=1.3e-12  Score=104.70  Aligned_cols=204  Identities=17%  Similarity=0.237  Sum_probs=107.9

Q ss_pred             ccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc-----cee--
Q 025758           15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL-----ELT--   87 (248)
Q Consensus        15 lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--   87 (248)
                      ++|.++.++.|..++..+...+++++||.|+|||++++.+...+.......+.+......  ........     ...  
T Consensus         1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~l   78 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEES--NESSLRSFIEETSLADEL   78 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBS--HHHHHHHHHHHHHHHCHC
T ss_pred             CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccch--hhhHHHHHHHHHHHHHHH
Confidence            478888999999999887777899999999999999999998652221111111110000  00000000     000  


Q ss_pred             ---ee-ccc--ceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------HHHHHHHHHHHH
Q 025758           88 ---TL-SSA--NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------REAQHSLRRTME  155 (248)
Q Consensus        88 ---~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------~~~~~~ll~~le  155 (248)
                         .. ..+  ....... .............++.+...        +...+|+|||++.+.      +.....|.+.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~--------~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~  149 (234)
T PF01637_consen   79 SEALGISIPSITLEKISK-DLSEDSFSALERLLEKLKKK--------GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD  149 (234)
T ss_dssp             HHHHHHHCCTSTTEEEEC-TS-GG-G--HHHHHHHHHHC--------HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred             HHHHhhhcccccchhhhh-cchhhHHHHHHHHHHHHHhc--------CCcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence               00 000  0000000 11112223345555555542        233799999998776      444556777776


Q ss_pred             Hh--cCCeeEEEEecCCC------cccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHccccH
Q 025758          156 KY--SASCRLILCCNSSS------KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL--PSGFATRLAEKSNRSL  225 (248)
Q Consensus       156 ~~--~~~~~~Il~t~~~~------~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~--~~~~~~~l~~~~~g~~  225 (248)
                      ..  ..+..+|++++...      .-..++..|+..+.+++.+.++..+.+...+... ..+  +++.++.+...++|.+
T Consensus       150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P  228 (234)
T PF01637_consen  150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP  228 (234)
T ss_dssp             H----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred             hccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence            62  23344555554422      1222456777789999999999999999887765 544  8999999999999999


Q ss_pred             HHHHH
Q 025758          226 RRAIL  230 (248)
Q Consensus       226 r~~~~  230 (248)
                      +.+..
T Consensus       229 ~~l~~  233 (234)
T PF01637_consen  229 RYLQE  233 (234)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            87653

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.45  E-value=4.3e-13  Score=103.88  Aligned_cols=133  Identities=22%  Similarity=0.283  Sum_probs=71.0

Q ss_pred             CcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec
Q 025758           11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (248)
                      +|+|++||+.+++.+.-...++  .|++++||||||||++|+.+.. +..+-...-...-..+...++          ..
T Consensus         1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~-lLP~l~~~e~le~~~i~s~~~----------~~   67 (206)
T PF01078_consen    1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPS-LLPPLTEEEALEVSKIYSVAG----------LG   67 (206)
T ss_dssp             -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHH-CS--CCEECCESS--S-TT-------------S
T ss_pred             ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHH-hCCCCchHHHhhhcccccccc----------CC
Confidence            4889999999999999888764  4699999999999999999997 655443221111100100000          00


Q ss_pred             ccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758           91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~  157 (248)
                      ........+.........+...++.......|..++ ..+..|+++||+..+++...+.|+..+++.
T Consensus        68 ~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeis-lAh~GVLflDE~~ef~~~vld~Lr~ple~g  133 (206)
T PF01078_consen   68 PDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEIS-LAHRGVLFLDELNEFDRSVLDALRQPLEDG  133 (206)
T ss_dssp             ---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGG-GGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred             CCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHH-HhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence            000011111111111111222222211111222222 346679999999999999999999999874

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.45  E-value=1.9e-13  Score=116.01  Aligned_cols=158  Identities=16%  Similarity=0.252  Sum_probs=93.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSAN   93 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~   93 (248)
                      +++.+...+..|.  .+.|.||+|+||||++++|++ +..+++|.+.++|..+....+..+ ..+-++      ..++.+
T Consensus        21 ~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~e   97 (351)
T PRK11432         21 VIDNLNLTIKQGT--MVTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGE   97 (351)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHH
Confidence            3444555555543  467999999999999999998 778999999999976642222111 000000      011112


Q ss_pred             eeeeCCCCcCcch---hHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758           94 HVELSPSDAGFQD---RYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (248)
Q Consensus        94 ~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~  152 (248)
                      ++.+.....+...   ...+.+.++.     +....+..+|+            ..+|+++++||| ..||...+..+..
T Consensus        98 Ni~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~  177 (351)
T PRK11432         98 NVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRE  177 (351)
T ss_pred             HHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence            2222111111111   1112222221     22333445553            448999999999 8999999999999


Q ss_pred             HHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758          153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       153 ~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      .+.+...  +..+|++||+..+.. .+.+|+.
T Consensus       178 ~l~~l~~~~g~tii~vTHd~~e~~-~laD~i~  208 (351)
T PRK11432        178 KIRELQQQFNITSLYVTHDQSEAF-AVSDTVI  208 (351)
T ss_pred             HHHHHHHhcCCEEEEEcCCHHHHH-HhCCEEE
Confidence            9987644  457777777765543 6667774

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=5.6e-13  Score=106.77  Aligned_cols=160  Identities=20%  Similarity=0.303  Sum_probs=110.4

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhc-----------C-C-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-D-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~-----------~-~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~   69 (248)
                      -+||-...+++|+=|.+...+.++..++-           | + +.+++|+|+||+|||.||+++|.+-   ++..+++.
T Consensus       175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT---SATFlRvv  251 (440)
T KOG0726|consen  175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT---SATFLRVV  251 (440)
T ss_pred             ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc---chhhhhhh
Confidence            45777778999999999988888887741           1 2 2349999999999999999999742   22222222


Q ss_pred             ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------
Q 025758           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------  143 (248)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------  143 (248)
                      |...-                    -.|...+     ...++++++- +.        +..|.|+||||+|.++      
T Consensus       252 GseLi--------------------QkylGdG-----pklvRqlF~v-A~--------e~apSIvFiDEIdAiGtKRyds  297 (440)
T KOG0726|consen  252 GSELI--------------------QKYLGDG-----PKLVRELFRV-AE--------EHAPSIVFIDEIDAIGTKRYDS  297 (440)
T ss_pred             hHHHH--------------------HHHhccc-----hHHHHHHHHH-HH--------hcCCceEEeehhhhhccccccC
Confidence            21100                    0111111     1124554543 33        3466799999999874      


Q ss_pred             -----HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHH
Q 025758          144 -----REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLE  199 (248)
Q Consensus       144 -----~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~  199 (248)
                           .+.+..++.+++..     ...+++|+.||..+.+.|+|..-.   ..|.|+.|+....++|+.
T Consensus       298 ~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~  366 (440)
T KOG0726|consen  298 NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQ  366 (440)
T ss_pred             CCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEE
Confidence                 34577788888764     345789999999999999998755   579999999888777765

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.44  E-value=1.1e-12  Score=100.67  Aligned_cols=116  Identities=16%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.+++..+.                      +.+.....+..+..+-.+.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~----------------------~~~q~~~LSgGq~qrv~la   83 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAG-QLIPNGDNDEWDGITPV----------------------YKPQYIDLSGGELQRVAIA   83 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHc-CCCCCCcEEEECCEEEE----------------------EEcccCCCCHHHHHHHHHH
Confidence            377999999999999999998 67888899888774322                      2222222333332222222


Q ss_pred             HHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhhee
Q 025758          116 EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       116 ~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...         ..+++++++||+ ..+|+.....+.+.+.+....  ..+|++||+.. ....+.+|+..+
T Consensus        84 ral---------~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l  145 (177)
T cd03222          84 AAL---------LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVF  145 (177)
T ss_pred             HHH---------hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEE
Confidence            211         226789999999 799999999999999876432  56777777654 344666666443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.44  E-value=1.4e-13  Score=110.78  Aligned_cols=160  Identities=16%  Similarity=0.247  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--c--cccceee------ec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--N--IDLELTT------LS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~------~~   90 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++.......  .  ..+..+.      .+
T Consensus        15 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   91 (232)
T cd03218          15 VVNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVG-LVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT   91 (232)
T ss_pred             eeccceeEecCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence            4455555555553  366999999999999999998 67888999999887543111100  0  0000000      01


Q ss_pred             ccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           91 SANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      ..+++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....
T Consensus        92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~  171 (232)
T cd03218          92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD  171 (232)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence            1111111000000000   01112222221     1112223332            458999999999 8999999999


Q ss_pred             HHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       150 ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+++.+... +..+|++||+.. ....+.+|+..+
T Consensus       172 ~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l  206 (232)
T cd03218         172 IQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYII  206 (232)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            9999987754 456777777655 445667777443

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.44  E-value=6.8e-13  Score=100.91  Aligned_cols=137  Identities=16%  Similarity=0.217  Sum_probs=85.3

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCc
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (248)
                      +.+...+.+|.  .+.|.||+|+||||+++++++ +..+..|.+.+++.......+..         .....+++.+.  
T Consensus        17 ~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~~---------~~~~~i~~~~q--   82 (163)
T cd03216          17 DGVSLSVRRGE--VHALLGENGAGKSTLMKILSG-LYKPDSGEILVDGKEVSFASPRD---------ARRAGIAMVYQ--   82 (163)
T ss_pred             eeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEECCcCCHHH---------HHhcCeEEEEe--
Confidence            33434444443  477999999999999999998 66888899988886543111100         00112333332  


Q ss_pred             CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhh
Q 025758          103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSR  180 (248)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR  180 (248)
                       .+..+..+-.+....         ..+|+++++||| ..+|+.....+.+.+.+... +..+|++|++.. ....+.+|
T Consensus        83 -LS~G~~qrl~laral---------~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~  151 (163)
T cd03216          83 -LSVGERQMVEIARAL---------ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADR  151 (163)
T ss_pred             -cCHHHHHHHHHHHHH---------hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence             333332222222211         226789999999 79999999999999988754 456677766654 34455666


Q ss_pred             hhee
Q 025758          181 CLNI  184 (248)
Q Consensus       181 ~~~i  184 (248)
                      +..+
T Consensus       152 ~~~l  155 (163)
T cd03216         152 VTVL  155 (163)
T ss_pred             EEEE
Confidence            6443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.44  E-value=2.9e-13  Score=115.07  Aligned_cols=156  Identities=15%  Similarity=0.264  Sum_probs=91.1

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc-ccce------eeeccccee
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLEL------TTLSSANHV   95 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~   95 (248)
                      +.+...+..|.  .+.|.||+|+||||++++||+ +..+++|.+.++|..+....+..+. .+-+      ...++.+++
T Consensus        21 ~~vs~~i~~Ge--~~~l~GpsGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi   97 (353)
T TIGR03265        21 KDISLSVKKGE--FVCLLGPSGCGKTTLLRIIAG-LERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI   97 (353)
T ss_pred             EeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence            33444444443  367999999999999999999 7789999999999766421111110 0000      001111111


Q ss_pred             eeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHH
Q 025758           96 ELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM  154 (248)
Q Consensus        96 ~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~l  154 (248)
                      .+.....+...   ...+.++++.+     ....+..+|+            ..+|+++++||| ..||...+..+...+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L  177 (353)
T TIGR03265        98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI  177 (353)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            11111001000   11122222221     1223334442            448999999999 899999999999999


Q ss_pred             HHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758          155 EKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       155 e~~~~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      .+...  +.++|++||+..+. ..+.+|+.
T Consensus       178 ~~l~~~~~~tvi~vTHd~~ea-~~l~d~i~  206 (353)
T TIGR03265       178 RQLQRRLGVTTIMVTHDQEEA-LSMADRIV  206 (353)
T ss_pred             HHHHHhcCCEEEEEcCCHHHH-HHhCCEEE
Confidence            87644  45778887776544 46777763

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.44  E-value=4.1e-13  Score=107.24  Aligned_cols=162  Identities=19%  Similarity=0.297  Sum_probs=104.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee--c-------cCCcccccceeee--
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI--D-------AGSRNIDLELTTL--   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~--   89 (248)
                      +++.+...+..|  ..+++.|+|||||||+++.+++ +..+..|.+.+++.++..  .       .+..++..+.+..  
T Consensus        19 ~l~~v~~~i~~G--e~~~i~G~nGsGKSTL~~~l~G-Ll~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~   95 (235)
T COG1122          19 ALKDVSLEIEKG--ERVLLIGPNGSGKSTLLKLLNG-LLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP   95 (235)
T ss_pred             eeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHcC-cCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence            333444444444  3478999999999999999998 889999999888865431  0       0111111111111  


Q ss_pred             cccceeeeCCCCcCcchhHHHH---HHH-----HHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758           90 SSANHVELSPSDAGFQDRYVVQ---EVI-----KEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (248)
                      ++.+.+.+.+.+.+....+...   +.+     ..+....+..+|+            ..+|.++++||+ .++|+.+..
T Consensus        96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~  175 (235)
T COG1122          96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR  175 (235)
T ss_pred             cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence            2334456677777666543222   222     2223455667774            337999999999 899999999


Q ss_pred             HHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhheeee
Q 025758          149 SLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNIRI  186 (248)
Q Consensus       149 ~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~i~~  186 (248)
                      .+++++.+....  ..+|++||+.+.+. .+.+|+.++.-
T Consensus       176 ~l~~~l~~L~~~~~~tii~~tHd~~~~~-~~ad~v~vl~~  214 (235)
T COG1122         176 ELLELLKKLKEEGGKTIIIVTHDLELVL-EYADRVVVLDD  214 (235)
T ss_pred             HHHHHHHHHHhcCCCeEEEEeCcHHHHH-hhCCEEEEEEC
Confidence            999999998665  36777777755444 77788755443

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.44  E-value=2.6e-13  Score=115.99  Aligned_cols=158  Identities=15%  Similarity=0.286  Sum_probs=94.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-cccce------eeecccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLEL------TTLSSAN   93 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~   93 (248)
                      +++.+...+..|.  .+.|.||+|+||||++++||+ +..+..|.+.++|..+....+... ..+-+      ...++.+
T Consensus        29 ~l~~vsl~i~~Ge--~~~LlGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e  105 (375)
T PRK09452         29 VISNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAG-FETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE  105 (375)
T ss_pred             EEeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHH
Confidence            3344444444443  467999999999999999998 778899999999986642111111 00000      0111122


Q ss_pred             eeeeCCCCcCcch---hHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758           94 HVELSPSDAGFQD---RYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (248)
Q Consensus        94 ~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~  152 (248)
                      ++.+.....+...   ...+.+.++.     +....+..+|+            ..+|+++++||| ..||...+..+.+
T Consensus       106 Ni~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~  185 (375)
T PRK09452        106 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQN  185 (375)
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence            2222111111111   1112222222     22334445553            458999999999 8999999999999


Q ss_pred             HHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758          153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       153 ~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      .|.+...  +..+|++||+..+.. .+.+|+.
T Consensus       186 ~L~~l~~~~g~tiI~vTHd~~ea~-~laDri~  216 (375)
T PRK09452        186 ELKALQRKLGITFVFVTHDQEEAL-TMSDRIV  216 (375)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEE
Confidence            9988754  467888888865543 5667763

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.43  E-value=7e-13  Score=104.92  Aligned_cols=148  Identities=18%  Similarity=0.276  Sum_probs=87.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +.+.+...+.+|.  .+.+.||||+||||+++++++ +..+.+|.+.+++.+.... ....           ..+.+.+.
T Consensus        15 ~l~~~~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~-~~~~-----------~~i~~~~q   79 (208)
T cd03268          15 VLDDISLHVKKGE--IYGFLGPNGAGKTTTMKIILG-LIKPDSGEITFDGKSYQKN-IEAL-----------RRIGALIE   79 (208)
T ss_pred             eEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCCcccch-HHHH-----------hhEEEecC
Confidence            3444444444442  377999999999999999998 6688899999988654311 0000           01111111


Q ss_pred             CcCcch------------------hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758          101 DAGFQD------------------RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (248)
Q Consensus       101 ~~~~~~------------------~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (248)
                      ......                  ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+
T Consensus        80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~  159 (208)
T cd03268          80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP  159 (208)
T ss_pred             CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence            111111                  11122222221     1112223332            458999999999 89999


Q ss_pred             HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .....+.+.+.+... +..+|++||+.. ....+.+|+..+
T Consensus       160 ~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l  199 (208)
T cd03268         160 DGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGII  199 (208)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEE
Confidence            999999999988754 345666666544 445666666444

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.43  E-value=5.6e-13  Score=102.43  Aligned_cols=139  Identities=20%  Similarity=0.300  Sum_probs=84.8

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (248)
                      .+.+...+..|.  .+.+.||+|+||||+++++++ +..+.+|.+.+++.++.......          ....+.+.+.+
T Consensus        18 l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~----------~~~~i~~~~q~   84 (173)
T cd03246          18 LRNVSFSIEPGE--SLAIIGPSGSGKSTLARLILG-LLRPTSGRVRLDGADISQWDPNE----------LGDHVGYLPQD   84 (173)
T ss_pred             eeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHh-ccCCCCCeEEECCEEcccCCHHH----------HHhheEEECCC
Confidence            333334444443  367999999999999999998 66788899988886543111000          01112333322


Q ss_pred             cCc----------chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecC
Q 025758          102 AGF----------QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNS  169 (248)
Q Consensus       102 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~  169 (248)
                      ...          +..+..+-.+....         ..+|+++++||| ..+|+.....+.+.+.+... +..+|++|++
T Consensus        85 ~~~~~~tv~~~lLS~G~~qrv~la~al---------~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~  155 (173)
T cd03246          85 DELFSGSIAENILSGGQRQRLGLARAL---------YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR  155 (173)
T ss_pred             CccccCcHHHHCcCHHHHHHHHHHHHH---------hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            221          11111111111111         237789999999 89999999999999988754 4567788887


Q ss_pred             CCcccHHHhhhhhee
Q 025758          170 SSKVTEAIRSRCLNI  184 (248)
Q Consensus       170 ~~~~~~~l~sR~~~i  184 (248)
                      ...+ . ..+|+..+
T Consensus       156 ~~~~-~-~~d~v~~l  168 (173)
T cd03246         156 PETL-A-SADRILVL  168 (173)
T ss_pred             HHHH-H-hCCEEEEE
Confidence            6543 3 56665444

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.43  E-value=1.9e-13  Score=109.14  Aligned_cols=160  Identities=19%  Similarity=0.263  Sum_probs=90.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--e------eeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--T------TLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~   92 (248)
                      +.+.+...+.+|.  .+.|.||||+|||||++++++ +..+.+|.+.++|.+.............+  +      ..+..
T Consensus        17 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   93 (220)
T cd03263          17 AVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTG-ELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR   93 (220)
T ss_pred             eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence            4555555555554  366999999999999999998 66888999988886543110000000000  0      00001


Q ss_pred             ceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           93 NHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        93 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      +++.+.....+...   ...+.+.++.+     .......+|.            ..+|+++++||| ..+|+.....+.
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~  173 (220)
T cd03263          94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW  173 (220)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH
Confidence            11110000000000   01112222211     1112223331            458999999999 899999999999


Q ss_pred             HHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          152 RTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       152 ~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+.+...+..+|++||++.. ...+.+|+..+
T Consensus       174 ~~l~~~~~~~tii~~sH~~~~-~~~~~d~i~~l  205 (220)
T cd03263         174 DLILEVRKGRSIILTTHSMDE-AEALCDRIAIM  205 (220)
T ss_pred             HHHHHHhcCCEEEEEcCCHHH-HHHhcCEEEEE
Confidence            999987666667777777554 44566776443

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.43  E-value=5.8e-13  Score=106.17  Aligned_cols=149  Identities=18%  Similarity=0.233  Sum_probs=89.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +.+.+...+..|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.++........           ..+.+.+.
T Consensus        20 il~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~-----------~~i~~~~q   85 (218)
T cd03266          20 AVDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAG-LLEPDAGFATVDGFDVVKEPAEAR-----------RRLGFVSD   85 (218)
T ss_pred             eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CcCCCCceEEECCEEcccCHHHHH-----------hhEEEecC
Confidence            4445555555443  367999999999999999998 668889999998865431100000           01111111


Q ss_pred             CcCcchh----------------------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758          101 DAGFQDR----------------------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus       101 ~~~~~~~----------------------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                      .......                      ..+.+.++.+     .......+|+            ..+|+++++||| .
T Consensus        86 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~  165 (218)
T cd03266          86 STGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTT  165 (218)
T ss_pred             CcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence            1111110                      1112222221     1111223332            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .||+.....+.+++.+... +..+|++||+.. ....+.+|+..+
T Consensus       166 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l  209 (218)
T cd03266         166 GLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVL  209 (218)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence            9999999999999988743 456777777765 334666666443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.43  E-value=7.9e-13  Score=103.30  Aligned_cols=146  Identities=16%  Similarity=0.167  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc-CCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (248)
                      +.+.+...+..|.  .+.|.||||+||||+++++++... .+..|.+.+++.++.  ..            ....+.+.+
T Consensus        22 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~--~~------------~~~~i~~~~   85 (192)
T cd03232          22 LLNNISGYVKPGT--LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD--KN------------FQRSTGYVE   85 (192)
T ss_pred             eEEccEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--HH------------hhhceEEec
Confidence            3344444444442  367999999999999999998322 367888888776432  00            011233433


Q ss_pred             CCcCcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEE
Q 025758          100 SDAGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLIL  165 (248)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il  165 (248)
                      .........++.+.+.......  .+|+            ..+|+++++||| ..+|+.....+.+.+.+... +..+|+
T Consensus        86 q~~~~~~~~tv~~~l~~~~~~~--~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii  163 (192)
T cd03232          86 QQDVHSPNLTVREALRFSALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC  163 (192)
T ss_pred             ccCccccCCcHHHHHHHHHHHh--cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence            3333333333444333211100  2331            347899999999 89999999999999988643 467888


Q ss_pred             EecCCCcccHHHhhhhhee
Q 025758          166 CCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       166 ~t~~~~~~~~~l~sR~~~i  184 (248)
                      +|++.+.....+.+|+..+
T Consensus       164 vtH~~~~~~~~~~d~i~~l  182 (192)
T cd03232         164 TIHQPSASIFEKFDRLLLL  182 (192)
T ss_pred             EEcCChHHHHhhCCEEEEE
Confidence            8888664344555665443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.42  E-value=8.9e-13  Score=104.55  Aligned_cols=159  Identities=15%  Similarity=0.223  Sum_probs=90.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------eccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~   92 (248)
                      +.+.+...+.+|   .+.|.||||+||||+++++++ +..+..|.+.++|.++............+..        .++.
T Consensus        15 ~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   90 (211)
T cd03264          15 ALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILAT-LTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR   90 (211)
T ss_pred             EEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhC-CCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH
Confidence            444555555553   577999999999999999998 6788899999888654311000000000000        0011


Q ss_pred             ceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           93 NHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        93 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      +++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..+|+..+..+.
T Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~  170 (211)
T cd03264          91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR  170 (211)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence            11110000000000   01112222221     1222233442            458999999999 899999999999


Q ss_pred             HHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          152 RTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       152 ~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+++......+|++||+... ...+.+|+..+
T Consensus       171 ~~l~~~~~~~tii~vsH~~~~-~~~~~d~i~~l  202 (211)
T cd03264         171 NLLSELGEDRIVILSTHIVED-VESLCNQVAVL  202 (211)
T ss_pred             HHHHHHhCCCEEEEEcCCHHH-HHHhCCEEEEE
Confidence            999988666667777766544 45666776544

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.42  E-value=2e-13  Score=108.97  Aligned_cols=160  Identities=18%  Similarity=0.216  Sum_probs=89.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--ee------eccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--TT------LSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~   92 (248)
                      +.+.+...+.+|.  .+.|.||||+|||||++++++ +..+.+|.+.+++..+.............  +.      .++.
T Consensus        15 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   91 (220)
T cd03265          15 AVRGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTT-LLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW   91 (220)
T ss_pred             eeeceeEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence            4445555554443  367999999999999999998 66888899988886443100000000000  00      0000


Q ss_pred             ceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           93 NHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        93 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      +.+.+.....+...   ...+.++++.+     ....+..+|+            ..+|+++++||| ..||+.....+.
T Consensus        92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~  171 (220)
T cd03265          92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW  171 (220)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence            00100000000100   01122222222     1122334442            458999999999 899999999999


Q ss_pred             HHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+.+...  +..+|++||+.. ....+.+|+..+
T Consensus       172 ~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l  205 (220)
T cd03265         172 EYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAII  205 (220)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            99988754  346777777655 445666776443

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.42  E-value=8.8e-13  Score=104.59  Aligned_cols=156  Identities=17%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             HHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceee------ecccceeee
Q 025758           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTT------LSSANHVEL   97 (248)
Q Consensus        25 l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~   97 (248)
                      +...+.+|.  .+.+.||||+||||+++++++ +..+.+|.+.+++.++....+.. ...+..+.      .+..+++.+
T Consensus        17 is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~g-l~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~   93 (211)
T cd03298          17 FDLTFAQGE--ITAIVGPSGSGKSTLLNLIAG-FETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL   93 (211)
T ss_pred             eEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence            333444443  467999999999999999998 66788899998887543111100 00000000      111111211


Q ss_pred             CCC-CcCc--chhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758           98 SPS-DAGF--QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (248)
Q Consensus        98 ~~~-~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~  156 (248)
                      ... ....  .....+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....+.+++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~  173 (211)
T cd03298          94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD  173 (211)
T ss_pred             ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            110 0000  0111223333221     2223334442            458999999999 89999999999999988


Q ss_pred             hcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          157 YSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       157 ~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...  +..+|++||+...+ ..+.+|+..+
T Consensus       174 ~~~~~~~tii~~sH~~~~~-~~~~d~i~~l  202 (211)
T cd03298         174 LHAETKMTVLMVTHQPEDA-KRLAQRVVFL  202 (211)
T ss_pred             HHHhcCCEEEEEecCHHHH-HhhhCEEEEE
Confidence            743  45677777765444 3566776544

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.42  E-value=1.3e-13  Score=109.27  Aligned_cols=160  Identities=19%  Similarity=0.321  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--ee-------ec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--TT-------LS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~-------~~   90 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.+++..+....... .....+  +.       .+
T Consensus        16 il~~vs~~i~~G~--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t   92 (211)
T cd03225          16 ALDDISLTIKKGE--FVLIVGPNGSGKSTLLRLLNG-LLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT   92 (211)
T ss_pred             eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence            4445555555543  366999999999999999998 66888999998886543110000 000000  00       00


Q ss_pred             ccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           91 SANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      ..+++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  172 (211)
T cd03225          93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE  172 (211)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            1111111000000000   01122222221     1223334442            458999999999 8999999999


Q ss_pred             HHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       150 ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+.+.+... +..+|++||+.. ....+.+|+..+
T Consensus       173 ~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l  207 (211)
T cd03225         173 LLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVL  207 (211)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            9999988754 456777777754 444566666544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.41  E-value=7.7e-13  Score=105.32  Aligned_cols=160  Identities=18%  Similarity=0.308  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT--------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------   88 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++....+..    .....+..        
T Consensus        18 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   94 (216)
T TIGR00960        18 ALDNLNFHITKGE--MVFLVGHSGAGKSTFLKLILG-IEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD   94 (216)
T ss_pred             EEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence            3444444455443  366999999999999999998 66788899999886543111100    00000000        


Q ss_pred             ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      .++.+++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..+|+...
T Consensus        95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~  174 (216)
T TIGR00960        95 RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS  174 (216)
T ss_pred             ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence            001111111000000000   11122222221     1222334442            458999999999 89999999


Q ss_pred             HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+.+.+.+..+ +..+|++||+.+ ....+.+|+..+
T Consensus       175 ~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l  211 (216)
T TIGR00960       175 RDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTL  211 (216)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            999999988743 456777777755 444566665444

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.41  E-value=8.8e-13  Score=104.74  Aligned_cols=159  Identities=14%  Similarity=0.259  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------eccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~   92 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.+......... ...+..        .+..
T Consensus        15 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~v~~~g~~~~~~~~~~~-~i~~~~q~~~~~~~~tv~   90 (213)
T cd03301          15 ALDDLNLDIADGE--FVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYIGGRDVTDLPPKDR-DIAMVFQNYALYPHMTVY   90 (213)
T ss_pred             eeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCCcccc-eEEEEecChhhccCCCHH
Confidence            4445544555443  477999999999999999998 667888999988865431111100 000000        0001


Q ss_pred             ceeeeCCCCcCcchhH---HHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           93 NHVELSPSDAGFQDRY---VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      +++.+.....+.....   .+.+.++.+     ....+..+|+            ..+|+++++||| ..+|+.....+.
T Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~  170 (213)
T cd03301          91 DNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR  170 (213)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence            1111100000011111   112222221     1222233442            448999999999 899999999999


Q ss_pred             HHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+.+...  +..+|++||+... ...+.+|+..+
T Consensus       171 ~~l~~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l  204 (213)
T cd03301         171 AELKRLQQRLGTTTIYVTHDQVE-AMTMADRIAVM  204 (213)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEE
Confidence            99988743  4577888777643 34555665443

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.41  E-value=9.3e-13  Score=105.13  Aligned_cols=158  Identities=18%  Similarity=0.250  Sum_probs=89.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee------eecccce
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT------TLSSANH   94 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~   94 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++...  .....+-.+      ..+..++
T Consensus        19 il~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~--~~~i~~v~q~~~~~~~~tv~e~   93 (220)
T cd03293          19 ALEDISLSVEEGE--FVALVGPSGCGKSTLLRIIAG-LERPTSGEVLVDGEPVTGP--GPDRGYVFQQDALLPWLTVLDN   93 (220)
T ss_pred             EEeceeEEEeCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECccc--cCcEEEEecccccccCCCHHHH
Confidence            3444555555553  367999999999999999998 6678899998888654310  000000000      0011111


Q ss_pred             eeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758           95 VELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT  153 (248)
Q Consensus        95 ~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~  153 (248)
                      +.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....+.++
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~  173 (220)
T cd03293          94 VALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEE  173 (220)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence            111000000000   01122222221     1222234442            448999999999 89999999999999


Q ss_pred             HHHhc-C-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          154 MEKYS-A-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       154 le~~~-~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+.. . +..+|++||+...+ ..+.+|+..+
T Consensus       174 l~~~~~~~~~tiii~sH~~~~~-~~~~d~i~~l  205 (220)
T cd03293         174 LLDIWRETGKTVLLVTHDIDEA-VFLADRVVVL  205 (220)
T ss_pred             HHHHHHHcCCEEEEEecCHHHH-HHhCCEEEEE
Confidence            98763 2 45677777776543 4566666544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.41  E-value=3.1e-11  Score=101.77  Aligned_cols=197  Identities=16%  Similarity=0.129  Sum_probs=122.4

Q ss_pred             CcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (248)
                      .+++++|.....+.+.+.+..  ....+|+|+|++||||+++|+.+-..-......-+.+++..+.              
T Consensus         4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~--------------   69 (326)
T PRK11608          4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN--------------   69 (326)
T ss_pred             ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC--------------
Confidence            467899988777766665542  2234599999999999999999986321122222222221110              


Q ss_pred             ecccceeeeCCCCcCcchhHHHH-HHHHHHHh------cCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 025758           89 LSSANHVELSPSDAGFQDRYVVQ-EVIKEMAK------NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---  158 (248)
                                       + .... +.+..-..      ....+.....+...++|||++.|+...+..|+.++++..   
T Consensus        70 -----------------~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~  131 (326)
T PRK11608         70 -----------------E-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELER  131 (326)
T ss_pred             -----------------H-HHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEe
Confidence                             0 0000 00000000      000011113345689999999999999999999997632   


Q ss_pred             --------CCeeEEEEecCC-------CcccHHHhhhh--heeeecCCCH--HHHHHHHHHHHH----HcC----CCCCH
Q 025758          159 --------ASCRLILCCNSS-------SKVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----KEG----LQLPS  211 (248)
Q Consensus       159 --------~~~~~Il~t~~~-------~~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~----~~~----~~~~~  211 (248)
                              .++++|++|+..       ..+.++|..|+  ..|.+||+..  +++..++...+.    +.+    ..+++
T Consensus       132 ~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~  211 (326)
T PRK11608        132 VGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTE  211 (326)
T ss_pred             CCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence                    135678777654       24557788887  4677877754  445555544432    222    25789


Q ss_pred             HHHHHHHHH-ccccHHHHHHHHHHHhhhc
Q 025758          212 GFATRLAEK-SNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       212 ~~~~~l~~~-~~g~~r~~~~~l~~~~~~~  239 (248)
                      +++..+... ..||+|++.+.++.++...
T Consensus       212 ~al~~L~~y~WPGNvrEL~~vl~~a~~~~  240 (326)
T PRK11608        212 RARETLLNYRWPGNIRELKNVVERSVYRH  240 (326)
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence            999999876 4999999999999988653

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.41  E-value=1.2e-13  Score=118.82  Aligned_cols=160  Identities=17%  Similarity=0.194  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-cccccceee--------e
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-RNIDLELTT--------L   89 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~   89 (248)
                      ..+++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|......... ..+...+..        .
T Consensus        16 ~~vL~~vs~~i~~Ge--iv~liGpNGaGKSTLLk~LaG-ll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~   92 (402)
T PRK09536         16 TTVLDGVDLSVREGS--LVGLVGPNGAGKTTLLRAING-TLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF   92 (402)
T ss_pred             EEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence            334455555555553  366999999999999999998 6788999999998754311110 000000000        0


Q ss_pred             cccceeeeCCC----CcC---cchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758           90 SSANHVELSPS----DAG---FQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (248)
Q Consensus        90 ~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (248)
                      +..+.+.+...    ...   ......+.+.++.+     .......+|+            .++|++++|||| ..||+
T Consensus        93 tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~  172 (402)
T PRK09536         93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI  172 (402)
T ss_pred             CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence            11111111100    000   01112233333322     1222224442            458999999999 89999


Q ss_pred             HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhh
Q 025758          145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      ..+..+++++.+... +..+|+++|+ ......+.+|+.
T Consensus       173 ~~~~~l~~lL~~l~~~g~TIIivsHd-l~~~~~~adrii  210 (402)
T PRK09536        173 NHQVRTLELVRRLVDDGKTAVAAIHD-LDLAARYCDELV  210 (402)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEECC-HHHHHHhCCEEE
Confidence            999999999998754 3455665555 444556777774

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=5.6e-12  Score=105.39  Aligned_cols=156  Identities=26%  Similarity=0.445  Sum_probs=99.8

Q ss_pred             cccccccHHHHHHHHHHhh------cCC--CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758           12 LDQVIVHQDIAQNLKKLVT------EQD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus        12 ~~~lig~~~~~~~l~~~~~------~~~--~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      |.++|-+..+.+.+.....      ..+  ..+|+|+||||+|||..|+-+|..-           |.+++...+     
T Consensus       354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-----------GlDYA~mTG-----  417 (630)
T KOG0742|consen  354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-----------GLDYAIMTG-----  417 (630)
T ss_pred             cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-----------CCceehhcC-----
Confidence            7888888888888776542      222  2349999999999999999999843           111111010     


Q ss_pred             cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC---------CHHHHHHHHHHH
Q 025758           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHSLRRTM  154 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~~~~~ll~~l  154 (248)
                              .   .+.|  .|....-.+-++++-...        ....-++||||+|.+         ......+|..++
T Consensus       418 --------G---DVAP--lG~qaVTkiH~lFDWakk--------S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlL  476 (630)
T KOG0742|consen  418 --------G---DVAP--LGAQAVTKIHKLFDWAKK--------SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL  476 (630)
T ss_pred             --------C---Cccc--cchHHHHHHHHHHHHHhh--------cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHH
Confidence                    0   0011  111111112222332222        235568999999854         333333444433


Q ss_pred             H---HhcCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH
Q 025758          155 E---KYSASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK  204 (248)
Q Consensus       155 e---~~~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~  204 (248)
                      =   +.+....+++.||.|..+.-++-+|+ .++.|+.|..++..++|...+++
T Consensus       477 fRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnk  530 (630)
T KOG0742|consen  477 FRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK  530 (630)
T ss_pred             HHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence            2   23445678888999999999999999 79999999999999998887764

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.41  E-value=1e-12  Score=104.41  Aligned_cols=160  Identities=16%  Similarity=0.291  Sum_probs=89.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT--------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------   88 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.+++.++....+..    .....+..        
T Consensus        17 il~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   93 (214)
T TIGR02673        17 ALHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYG-ALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD   93 (214)
T ss_pred             eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence            4555555565553  366999999999999999998 66788899988886543111100    00000000        


Q ss_pred             ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      .+..+++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..+|+...
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~  173 (214)
T TIGR02673        94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS  173 (214)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence            000011100000000000   01122222221     1112223442            448999999999 89999999


Q ss_pred             HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+.+.+.+... +..+|++||+.. ....+.+|+.++
T Consensus       174 ~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l  210 (214)
T TIGR02673       174 ERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIIL  210 (214)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEe
Confidence            999999988743 456777777654 444566666544

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.40  E-value=1.1e-12  Score=105.63  Aligned_cols=160  Identities=20%  Similarity=0.260  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT--------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------   88 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++....+..    .....+..        
T Consensus        20 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   96 (233)
T cd03258          20 ALKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCING-LERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS   96 (233)
T ss_pred             eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence            4455555555543  367999999999999999998 67888999999887543111000    00000000        


Q ss_pred             ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      .+..+++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+...
T Consensus        97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~  176 (233)
T cd03258          97 RTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT  176 (233)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHH
Confidence            000111110000000000   01112222221     1112223332            458999999999 79999999


Q ss_pred             HHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       148 ~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+.+++.+...  +..+|++||+.+ ....+.+|+..+
T Consensus       177 ~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l  214 (233)
T cd03258         177 QSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVM  214 (233)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            999999988743  456777777654 445666776443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.40  E-value=3.1e-11  Score=107.22  Aligned_cols=198  Identities=15%  Similarity=0.145  Sum_probs=122.9

Q ss_pred             CCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      -+|++++|.....+.+...+..  ....+++|.|++||||+++|+.|-..-......-+.+++.                
T Consensus       209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~----------------  272 (526)
T TIGR02329       209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCG----------------  272 (526)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccc----------------
Confidence            5688999998888777766642  2334599999999999999999986332222222222221                


Q ss_pred             eecccceeeeCCCCcCcchhHHHHHHHHH----HH---hcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc--
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQEVIKE----MA---KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--  158 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~--  158 (248)
                                   ...  +..--.+.+..    +.   .....++....+...++|||++.|+...|..|++++++..  
T Consensus       273 -------------~l~--e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~  337 (526)
T TIGR02329       273 -------------AIA--ESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVV  337 (526)
T ss_pred             -------------cCC--hhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEE
Confidence                         110  00000000000    00   0001111123455689999999999999999999998642  


Q ss_pred             ---------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHH----HcCCCCCHHHH
Q 025758          159 ---------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----KEGLQLPSGFA  214 (248)
Q Consensus       159 ---------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~----~~~~~~~~~~~  214 (248)
                               .+.++|++|+...       .+.+++-.|+  ..|.+||+..  +++..++...+.    ..++.++++++
T Consensus       338 r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~  417 (526)
T TIGR02329       338 RVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAA  417 (526)
T ss_pred             ecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence                     1236888877653       2444555565  4677777764  455555444443    33556888887


Q ss_pred             HH-------HHHH-ccccHHHHHHHHHHHhhh
Q 025758          215 TR-------LAEK-SNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       215 ~~-------l~~~-~~g~~r~~~~~l~~~~~~  238 (248)
                      ..       +... .+||+|++.|.++.++..
T Consensus       418 ~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~  449 (526)
T TIGR02329       418 QVLAGVADPLQRYPWPGNVRELRNLVERLALE  449 (526)
T ss_pred             HHhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            76       5444 489999999999998864

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.40  E-value=1.7e-12  Score=103.05  Aligned_cols=147  Identities=18%  Similarity=0.279  Sum_probs=85.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-cccceee------ecccceeeeCCC-CcCc--c
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELTT------LSSANHVELSPS-DAGF--Q  105 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~-~~~~--~  105 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.+++.++........ ..+..+.      .+..+++.+... ....  .
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~  104 (213)
T TIGR01277        26 IVAIMGPSGAGKSTLLNLIAG-FIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAE  104 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHH
Confidence            477999999999999999998 678889999998875431111000 0000000      011111111000 0000  0


Q ss_pred             hhHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEE
Q 025758          106 DRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL  165 (248)
Q Consensus       106 ~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il  165 (248)
                      ....+.+.++.     .....+..+|+            ..+|+++++||| ..||...+..+.+++.+...  ...+|+
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~  184 (213)
T TIGR01277       105 QQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM  184 (213)
T ss_pred             HHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            01112222222     12223334442            458999999999 89999999999999998753  456777


Q ss_pred             EecCCCcccHHHhhhhhee
Q 025758          166 CCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       166 ~t~~~~~~~~~l~sR~~~i  184 (248)
                      +|++...+ ..+.+|+..+
T Consensus       185 vsh~~~~~-~~~~d~v~~l  202 (213)
T TIGR01277       185 VTHHLSDA-RAIASQIAVV  202 (213)
T ss_pred             EeCCHHHH-HhhcCeEEEE
Confidence            77776544 4566666544

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.40  E-value=1e-12  Score=104.32  Aligned_cols=160  Identities=16%  Similarity=0.291  Sum_probs=89.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---cccccceee--------e
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTT--------L   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~   89 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.++......   ......+..        .
T Consensus        15 ~l~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   91 (213)
T cd03262          15 VLKGIDLTVKKGE--VVVIIGPSGSGKSTLLRCINL-LEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL   91 (213)
T ss_pred             eecCceEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence            3444444454443  367999999999999999998 6688899999888654210000   000000000        0


Q ss_pred             cccceeeeCCC-CcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           90 SSANHVELSPS-DAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        90 ~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      +..+++.+... ..+....   ..+.+.++.+     ....+..+|+            ..+|+++|+||| ..||+...
T Consensus        92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~  171 (213)
T cd03262          92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV  171 (213)
T ss_pred             cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence            01111111000 0000000   1112222221     1222334442            458999999999 89999999


Q ss_pred             HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+.+.+.+... +..+|++||+...+ ..+.+|+.++
T Consensus       172 ~~l~~~l~~~~~~~~tvi~~sh~~~~~-~~~~d~i~~l  208 (213)
T cd03262         172 GEVLDVMKDLAEEGMTMVVVTHEMGFA-REVADRVIFM  208 (213)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence            999999998754 35677777765443 4666666544

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.40  E-value=1.2e-12  Score=105.88  Aligned_cols=160  Identities=17%  Similarity=0.261  Sum_probs=90.9

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSAN   93 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~   93 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++........ ..+-.+      ..++.+
T Consensus        17 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   93 (239)
T cd03296          17 ALDDVSLDIPSGE--LVALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD   93 (239)
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence            4455555555553  366999999999999999998 667888999988865431111100 000000      001111


Q ss_pred             eeeeCCCCcCc----ch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758           94 HVELSPSDAGF----QD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (248)
Q Consensus        94 ~~~~~~~~~~~----~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (248)
                      ++.+.....+.    ..   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..+|+....
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~  173 (239)
T cd03296          94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK  173 (239)
T ss_pred             HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence            11111100000    00   01122222221     1222334442            458999999999 899999999


Q ss_pred             HHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       149 ~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+.+++.+...  ...+|++||+... ...+.+|+..+
T Consensus       174 ~l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l  210 (239)
T cd03296         174 ELRRWLRRLHDELHVTTVFVTHDQEE-ALEVADRVVVM  210 (239)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            99999988754  3567777777643 34556666443

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.40  E-value=1.8e-12  Score=104.55  Aligned_cols=159  Identities=15%  Similarity=0.258  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--ee------eccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--TT------LSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~   92 (248)
                      +.+.+...+.+|.  .+.+.||||+||||+++++++ +..+.+|.+.++|.++.............  +.      .+..
T Consensus        16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~   92 (236)
T TIGR03864        16 ALDDVSFTVRPGE--FVALLGPNGAGKSTLFSLLTR-LYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVR   92 (236)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHH
Confidence            3444444444443  366999999999999999998 66888999998886543111100000000  00      0001


Q ss_pred             ceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           93 NHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        93 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      +++.+.....+...   ...+.+.++.+     .......+|+            ..+|+++++||| ..+|+.....+.
T Consensus        93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~  172 (236)
T TIGR03864        93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV  172 (236)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence            11111000000000   01122222221     1112223332            458999999999 899999999999


Q ss_pred             HHHHHhc--CCeeEEEEecCCCcccHHHhhhhhee
Q 025758          152 RTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       152 ~~le~~~--~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+.+..  .+..+|++||+.+.+. . .+|+..+
T Consensus       173 ~~l~~~~~~~~~tiii~sH~~~~~~-~-~d~i~~l  205 (236)
T TIGR03864       173 AHVRALCRDQGLSVLWATHLVDEIE-A-DDRLVVL  205 (236)
T ss_pred             HHHHHHHHhCCCEEEEEecChhhHh-h-CCEEEEE
Confidence            9998875  2467888888877663 3 6777544

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.40  E-value=3e-12  Score=96.05  Aligned_cols=146  Identities=16%  Similarity=0.280  Sum_probs=95.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeecccceeeeCC--CCc-Ccc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSANHVELSP--SDA-GFQ  105 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~-~~~  105 (248)
                      +-+.||+|+||||+...+|+ +..|.+|.+.++|.+.....|..+. .+.        ...++.+++++..  .-. ...
T Consensus        28 vAi~GpSGaGKSTLLnLIAG-F~~P~~G~i~i~g~d~t~~~P~~RP-VSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~  105 (231)
T COG3840          28 VAILGPSGAGKSTLLNLIAG-FETPASGEILINGVDHTASPPAERP-VSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAE  105 (231)
T ss_pred             EEEECCCCccHHHHHHHHHh-ccCCCCceEEEcCeecCcCCcccCC-hhhhhhccccchhhhhhhhhcccCCcccccCHH
Confidence            55999999999999999999 7899999999999876644554332 111        1223334444332  111 111


Q ss_pred             hhHHHHHH-----HHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEE
Q 025758          106 DRYVVQEV-----IKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL  165 (248)
Q Consensus       106 ~~~~~~~~-----~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il  165 (248)
                      ..+.+...     +..+.+..|..+|+            ..+.+|+++||+ ..++|..++.++.++.....  ..++++
T Consensus       106 ~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm  185 (231)
T COG3840         106 QREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM  185 (231)
T ss_pred             HHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence            22222222     23344455667774            336779999999 89999999999999987643  357888


Q ss_pred             EecCCCcccHHHhhhhheee
Q 025758          166 CCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       166 ~t~~~~~~~~~l~sR~~~i~  185 (248)
                      +|+++++.. .+-+|...+.
T Consensus       186 VTH~~~Da~-~ia~~~~fl~  204 (231)
T COG3840         186 VTHHPEDAA-RIADRVVFLD  204 (231)
T ss_pred             EeCCHHHHH-HhhhceEEEe
Confidence            888887654 5556664443

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.39  E-value=4.7e-11  Score=106.06  Aligned_cols=203  Identities=15%  Similarity=0.188  Sum_probs=120.4

Q ss_pred             CcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcc-cceecccceeeccCCccccccee
Q 025758           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-KVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      +|++++|.....+.+...+..  ....+++|+|++||||+++|+.|-..+...... ....++ +               
T Consensus       217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~-p---------------  280 (538)
T PRK15424        217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSH-P---------------  280 (538)
T ss_pred             chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCC-C---------------
Confidence            688999998888777776642  233459999999999999999998742110000 000001 1               


Q ss_pred             eecccceeeeCCCCcCcchhHHHH-HHHHH----HHh---cCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQ-EVIKE----MAK---NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-  158 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~---~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-  158 (248)
                            ++.+.+....  + .... +.+..    +..   ....++....+...|+|||++.|+...|..|++++++.. 
T Consensus       281 ------fv~inCaal~--e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~  351 (538)
T PRK15424        281 ------FVAVNCGAIA--E-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEV  351 (538)
T ss_pred             ------eEEeecccCC--h-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeE
Confidence                  1222222110  0 0000 00000    000   000112223455689999999999999999999998632 


Q ss_pred             ----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHHH----cCCCCCHHH
Q 025758          159 ----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAKK----EGLQLPSGF  213 (248)
Q Consensus       159 ----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~~----~~~~~~~~~  213 (248)
                                .+.++|++|+...       .+.+++--|+  ..|.+||+..  +++..++...+.+    .+..+++++
T Consensus       352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a  431 (538)
T PRK15424        352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAAL  431 (538)
T ss_pred             EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence                      2346888877653       2334555665  4677777754  4555555555443    455677777


Q ss_pred             HHH-------HHHH-ccccHHHHHHHHHHHhhh
Q 025758          214 ATR-------LAEK-SNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       214 ~~~-------l~~~-~~g~~r~~~~~l~~~~~~  238 (248)
                      +..       +... .+||+|++.|.++.++..
T Consensus       432 ~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~  464 (538)
T PRK15424        432 RQGLQQCETLLLHYDWPGNVRELRNLMERLALF  464 (538)
T ss_pred             HHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            643       3222 589999999999998864

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.39  E-value=4.2e-13  Score=107.83  Aligned_cols=160  Identities=14%  Similarity=0.197  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee----------c
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL----------S   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~   90 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.+.....+.......+..+          +
T Consensus        15 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   91 (230)
T TIGR03410        15 ILRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMG-LLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT   91 (230)
T ss_pred             EecceeeEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence            4445555555543  367999999999999999998 66888999998886543111100000000000          0


Q ss_pred             ccceeeeCCCCcCcchhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           91 SANHVELSPSDAGFQDRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      ..+++.+.....+........+.++.+      .......+|+            ..+|+++++||| ..||+.....+.
T Consensus        92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~  171 (230)
T TIGR03410        92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG  171 (230)
T ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence            001111100000000011112222221      1222233442            458999999999 899999999999


Q ss_pred             HHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +++.+...  +..+|++|++.+ ....+.+|+..+
T Consensus       172 ~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l  205 (230)
T TIGR03410       172 RVIRRLRAEGGMAILLVEQYLD-FARELADRYYVM  205 (230)
T ss_pred             HHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEE
Confidence            99988754  456777777755 445666777443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.39  E-value=1.8e-12  Score=104.27  Aligned_cols=147  Identities=18%  Similarity=0.333  Sum_probs=86.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceee------ecccceeeeCCC-CcCc--c
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTT------LSSANHVELSPS-DAGF--Q  105 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~-~~~~--~  105 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.++|.++....... ...+..+.      .+..+++.+... ....  .
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  105 (232)
T PRK10771         27 RVAILGPSGAGKSTLLNLIAG-FLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA  105 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHH
Confidence            477999999999999999998 66888899999887543111100 00000000      011111111100 0000  0


Q ss_pred             hhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEE
Q 025758          106 DRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL  165 (248)
Q Consensus       106 ~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il  165 (248)
                      ....+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..+..+.+++.+..+  +..+|+
T Consensus       106 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii  185 (232)
T PRK10771        106 QREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLM  185 (232)
T ss_pred             HHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            111123333222     2233334442            458999999999 89999999999999988643  456777


Q ss_pred             EecCCCcccHHHhhhhhee
Q 025758          166 CCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       166 ~t~~~~~~~~~l~sR~~~i  184 (248)
                      +|++...+ ..+.+|+..+
T Consensus       186 ~sH~~~~~-~~~~d~i~~l  203 (232)
T PRK10771        186 VSHSLEDA-ARIAPRSLVV  203 (232)
T ss_pred             EECCHHHH-HHhCCEEEEE
Confidence            77776544 4666776443

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.39  E-value=1.5e-12  Score=105.07  Aligned_cols=160  Identities=17%  Similarity=0.240  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----cccccceee--------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT--------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------   88 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.    ......+..        
T Consensus        15 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   91 (235)
T cd03261          15 VLKGVDLDVRRGE--ILAIIGPSGSGKSTLLRLIVG-LLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS   91 (235)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence            3444444555553  366999999999999999998 6688899999888654311110    000000000        


Q ss_pred             ecccceeeeCCC-CcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           89 LSSANHVELSPS-DAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        89 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      .++.+++.+... ..+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..
T Consensus        92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~  171 (235)
T cd03261          92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA  171 (235)
T ss_pred             CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence            011111111000 000010   01122222221     1112223442            458999999999 8999999


Q ss_pred             HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+.+.+.+...  +..+|++||+... ...+.+|+..+
T Consensus       172 ~~~l~~~l~~~~~~~~~tvi~vsH~~~~-~~~~~d~v~~l  210 (235)
T cd03261         172 SGVIDDLIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVL  210 (235)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhcCEEEEE
Confidence            9999999988743  4567777777654 45667777544

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.39  E-value=8.7e-13  Score=112.97  Aligned_cols=156  Identities=13%  Similarity=0.250  Sum_probs=89.3

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc-ccce------eeeccccee
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLEL------TTLSSANHV   95 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~   95 (248)
                      +.+...+..|.  .+.|.||+|+||||++++||+ +..+..|.+.++|..+....+.... .+-+      ...++.+++
T Consensus        36 ~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi  112 (377)
T PRK11607         36 DDVSLTIYKGE--IFALLGASGCGKSTLLRMLAG-FEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNI  112 (377)
T ss_pred             eeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHH
Confidence            33444444443  467999999999999999998 7789999999999765421111110 0000      011112222


Q ss_pred             eeCCCCcCcch---hHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHH
Q 025758           96 ELSPSDAGFQD---RYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM  154 (248)
Q Consensus        96 ~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~l  154 (248)
                      .+.....+...   ...+.+.++.     +....+..+|+            ..+|+++++||+ ..||...+..+...+
T Consensus       113 ~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  192 (377)
T PRK11607        113 AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV  192 (377)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            22111111111   0112222221     11223334542            458999999999 899999998888777


Q ss_pred             HHhc--CCeeEEEEecCCCcccHHHhhhhh
Q 025758          155 EKYS--ASCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       155 e~~~--~~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      .+..  .+..+|++||+..+.. .+.+|+.
T Consensus       193 ~~l~~~~g~tii~vTHd~~ea~-~laDri~  221 (377)
T PRK11607        193 VDILERVGVTCVMVTHDQEEAM-TMAGRIA  221 (377)
T ss_pred             HHHHHhcCCEEEEEcCCHHHHH-HhCCEEE
Confidence            6653  2467788877765444 6777763

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.39  E-value=3.5e-11  Score=110.38  Aligned_cols=199  Identities=16%  Similarity=0.162  Sum_probs=122.8

Q ss_pred             CCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      .+|++++|.....+.+...+..  .....++|+|++||||+++|+++-.........-+.+++..+.             
T Consensus       322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~-------------  388 (638)
T PRK11388        322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP-------------  388 (638)
T ss_pred             ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC-------------
Confidence            4789999988776665554432  2223499999999999999999987433223222222221110             


Q ss_pred             eecccceeeeCCCCcCcchhHHHHHHHHHH---HhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEM---AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------  158 (248)
                                        ......+.+...   ......+.....+...|+|||++.|+...|..|++++++..      
T Consensus       389 ------------------~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~  450 (638)
T PRK11388        389 ------------------DEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDS  450 (638)
T ss_pred             ------------------hHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCC
Confidence                              000000111100   00000011112355689999999999999999999998642      


Q ss_pred             -----CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHHHc------CCCCCHHHHHH
Q 025758          159 -----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAKKE------GLQLPSGFATR  216 (248)
Q Consensus       159 -----~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~~~------~~~~~~~~~~~  216 (248)
                           .+.++|++|+...       .+.+.|--|+  ..|.+||+..  +++..++...+.+.      .+.+++++++.
T Consensus       451 ~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~  530 (638)
T PRK11388        451 RRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR  530 (638)
T ss_pred             CceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence                 1345777777542       3444555555  4567777764  34555555544321      35689999999


Q ss_pred             HHHHc-cccHHHHHHHHHHHhhhc
Q 025758          217 LAEKS-NRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       217 l~~~~-~g~~r~~~~~l~~~~~~~  239 (248)
                      |.... +||+|++.|.++.++...
T Consensus       531 L~~y~WPGNvreL~~~l~~~~~~~  554 (638)
T PRK11388        531 LVSYRWPGNDFELRSVIENLALSS  554 (638)
T ss_pred             HHcCCCCChHHHHHHHHHHHHHhC
Confidence            99887 999999999999987643

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.39  E-value=1.6e-12  Score=102.19  Aligned_cols=141  Identities=14%  Similarity=0.212  Sum_probs=87.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +++.+...++.|.  .+.+.||+|||||||..++++ +..+++|.+.++|.+.........      ..-...++++...
T Consensus        20 ~L~~v~l~i~~Ge--~vaI~GpSGSGKSTLLniig~-ld~pt~G~v~i~g~d~~~l~~~~~------~~~R~~~iGfvFQ   90 (226)
T COG1136          20 ALKDVNLEIEAGE--FVAIVGPSGSGKSTLLNLLGG-LDKPTSGEVLINGKDLTKLSEKEL------AKLRRKKIGFVFQ   90 (226)
T ss_pred             ecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhc-ccCCCCceEEECCEEcCcCCHHHH------HHHHHHhEEEECc
Confidence            3444444455554  366999999999999999998 888999999999865431111000      0001122333333


Q ss_pred             CcCcchhHHHHHH----------------------HHH-----HHh-cCCCcCCC------------CCCeeEEEEeCC-
Q 025758          101 DAGFQDRYVVQEV----------------------IKE-----MAK-NRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus       101 ~~~~~~~~~~~~~----------------------~~~-----~~~-~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                      +....+..++.+.                      ++.     ... .+|..+|+            ..+|++|+.||| 
T Consensus        91 ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPT  170 (226)
T COG1136          91 NFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPT  170 (226)
T ss_pred             cCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCcc
Confidence            2222222222221                      211     112 44667774            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCC
Q 025758          140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSS  170 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~  170 (248)
                      ..||......+++++.+...  +..+|++||++
T Consensus       171 gnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~  203 (226)
T COG1136         171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDP  203 (226)
T ss_pred             ccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence            79999999999999988843  45777777774

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.39  E-value=4.5e-13  Score=105.47  Aligned_cols=159  Identities=19%  Similarity=0.226  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee--------eecc
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT--------TLSS   91 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~   91 (248)
                      .+.+.+...+..|.  .+.|.|+||+||||+++++++ +..+.+|.+.+++...............+.        ..+.
T Consensus        14 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   90 (201)
T cd03231          14 ALFSGLSFTLAAGE--ALQVTGPNGSGKTTLLRILAG-LSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV   90 (201)
T ss_pred             eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence            34455555555553  366999999999999999998 678889999888865431111000000000        0001


Q ss_pred             cceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758           92 ANHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT  153 (248)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~  153 (248)
                      .+++.+...   ......+.+.++.+     .......+|+            ..+|+++++||| ..||+.....+.+.
T Consensus        91 ~e~l~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~  167 (201)
T cd03231          91 LENLRFWHA---DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA  167 (201)
T ss_pred             HHHHHhhcc---cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence            111111000   00111122222221     1112223332            458999999999 89999999999999


Q ss_pred             HHHhcC-CeeEEEEecCCCcccHHHhhhhheee
Q 025758          154 MEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       154 le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      +.+... ...+|++|++...+.+ ..+|+....
T Consensus       168 l~~~~~~g~tiii~sH~~~~~~~-~~~~~~~~~  199 (201)
T cd03231         168 MAGHCARGGMVVLTTHQDLGLSE-AGARELDLG  199 (201)
T ss_pred             HHHHHhCCCEEEEEecCchhhhh-ccceeEecc
Confidence            987643 4567888887766664 666664433

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.39  E-value=4.6e-13  Score=114.26  Aligned_cols=167  Identities=23%  Similarity=0.358  Sum_probs=115.3

Q ss_pred             ccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc---------
Q 025758           15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE---------   85 (248)
Q Consensus        15 lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   85 (248)
                      .+|.-.+.+.+...+..|.+..  |.|.||+|||||++++.+ +..|++|++.++|++..+.+|......-         
T Consensus        13 ~f~~~~And~V~l~v~~GeIHa--LLGENGAGKSTLm~iL~G-~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~   89 (501)
T COG3845          13 RFPGVVANDDVSLSVKKGEIHA--LLGENGAGKSTLMKILFG-LYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFM   89 (501)
T ss_pred             EcCCEEecCceeeeecCCcEEE--EeccCCCCHHHHHHHHhC-cccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccc
Confidence            3444445556666777888878  999999999999999998 7899999999999988776775442111         


Q ss_pred             -eeeecccceeeeCCCC--cCcchhHHHHHHHHHHHhcCCCcCCC---------------------CCCeeEEEEeCC-C
Q 025758           86 -LTTLSSANHVELSPSD--AGFQDRYVVQEVIKEMAKNRPIDTKG---------------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        86 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~viiiDE~-d  140 (248)
                       .+..++.+++.+..+.  ........+++.++.+...+...+..                     ..+.+++|+||| .
T Consensus        90 Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTa  169 (501)
T COG3845          90 LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTA  169 (501)
T ss_pred             cccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcc
Confidence             1222333444333332  12233344555566665554432221                     347889999999 6


Q ss_pred             CCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhhheee
Q 025758          141 KLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      -|.|.....|++++....+.+ .+|+|||...++. .+.+|+.+++
T Consensus       170 VLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~-~iaDrvTVLR  214 (501)
T COG3845         170 VLTPQEADELFEILRRLAAEGKTIIFITHKLKEVM-AIADRVTVLR  214 (501)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHH-HhhCeeEEEe
Confidence            889999999999999886654 6899999887776 7788875433

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.39  E-value=4.2e-13  Score=110.31  Aligned_cols=147  Identities=14%  Similarity=0.242  Sum_probs=84.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-----ccccceee--------ecccceeeeCCCCc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-----NIDLELTT--------LSSANHVELSPSDA  102 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--------~~~~~~~~~~~~~~  102 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.++|.+.....+..     .....+..        .+..+++.+.....
T Consensus        52 ~~~l~G~nGsGKSTLl~~L~G-l~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  130 (269)
T cd03294          52 IFVIMGLSGSGKSTLLRCINR-LIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ  130 (269)
T ss_pred             EEEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence            367999999999999999998 67888999999886543111100     00000000        00011111100000


Q ss_pred             Ccch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--
Q 025758          103 GFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--  159 (248)
Q Consensus       103 ~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--  159 (248)
                      +...   ...+.+.++.+     ....+..+|+            ..+|+++|+||| ..||+.....+.+++.+...  
T Consensus       131 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~  210 (269)
T cd03294         131 GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL  210 (269)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence            0000   01122222221     1223334442            458999999999 89999999999999988743  


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhee
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +..+|++||+.+. ...+.+|+..+
T Consensus       211 g~tiii~tH~~~~-~~~~~d~v~~l  234 (269)
T cd03294         211 QKTIVFITHDLDE-ALRLGDRIAIM  234 (269)
T ss_pred             CCEEEEEeCCHHH-HHHhcCEEEEE
Confidence            4567777776553 45677776443

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.39  E-value=1.7e-12  Score=102.06  Aligned_cols=148  Identities=11%  Similarity=0.105  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (248)
                      +.+.+...+.+|  ..+.|.||||+||||+++++++.. ..+.+|.+.+++.++....+....         ...+.+.+
T Consensus        15 ~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~---------~~~i~~v~   83 (200)
T cd03217          15 ILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERA---------RLGIFLAF   83 (200)
T ss_pred             eeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHh---------hCcEEEee
Confidence            444555555444  347799999999999999999843 367889999988755421110000         01133333


Q ss_pred             CCcCcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEE
Q 025758          100 SDAGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLIL  165 (248)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il  165 (248)
                      .........++.+.++..    +..+|+            ..+|+++++||| ..||+.....+++++.+... ...+|+
T Consensus        84 q~~~~~~~~~~~~~l~~~----~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii  159 (200)
T cd03217          84 QYPPEIPGVKNADFLRYV----NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI  159 (200)
T ss_pred             cChhhccCccHHHHHhhc----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            332222222233322111    112221            347899999999 89999999999999988754 356777


Q ss_pred             EecCCCcccHH-Hhhhhhee
Q 025758          166 CCNSSSKVTEA-IRSRCLNI  184 (248)
Q Consensus       166 ~t~~~~~~~~~-l~sR~~~i  184 (248)
                      +|++.. .... +.+|+..+
T Consensus       160 ~sh~~~-~~~~~~~d~i~~l  178 (200)
T cd03217         160 ITHYQR-LLDYIKPDRVHVL  178 (200)
T ss_pred             EecCHH-HHHHhhCCEEEEE
Confidence            777765 4445 56776433

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.39  E-value=6.8e-13  Score=105.48  Aligned_cols=156  Identities=15%  Similarity=0.185  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec---------
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS---------   90 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   90 (248)
                      .+++.+...+..|.  .+.|.||||+||||+++++++ +..+..|.+.+++..+...  ....  ......         
T Consensus        25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~i~~~--~~~~--~i~~~~q~~~~~~~~   97 (214)
T PRK13543         25 PVFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAG-LLHVESGQIQIDGKTATRG--DRSR--FMAYLGHLPGLKADL   97 (214)
T ss_pred             eeeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhC-CCCCCCeeEEECCEEccch--hhhh--ceEEeecCcccccCC
Confidence            34455555555543  367999999999999999998 6788899999888654311  0000  000000         


Q ss_pred             -ccceeeeCCCCcCcchhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           91 -SANHVELSPSDAGFQDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        91 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                       ..+++.+.....+........+.+..+.     ......+|+            ..+|+++++||| ..+|+.....+.
T Consensus        98 t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  177 (214)
T PRK13543         98 STLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVN  177 (214)
T ss_pred             cHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence             0000000000000001111122222211     111123331            458999999999 899999999999


Q ss_pred             HHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758          152 RTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       152 ~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +.+.+.... ..+|++||+... .+.+.+|...
T Consensus       178 ~~l~~~~~~~~tiii~sH~~~~-~~~~~~~i~~  209 (214)
T PRK13543        178 RMISAHLRGGGAALVTTHGAYA-APPVRTRMLT  209 (214)
T ss_pred             HHHHHHHhCCCEEEEEecChhh-hhhhcceEEE
Confidence            999876443 456666666544 4456566543

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.38  E-value=2.3e-14  Score=108.86  Aligned_cols=162  Identities=15%  Similarity=0.214  Sum_probs=112.0

Q ss_pred             ccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccc
Q 025758           13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA   92 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (248)
                      .+-++.+.+++.++..+.+|.+-+  |.||||+||||+-.++.+ +..+++|++.+++.++..-.-.         ....
T Consensus        11 ~K~y~kr~Vv~~Vsl~v~~GEiVG--LLGPNGAGKTT~Fymi~G-lv~~d~G~i~ld~~diT~lPm~---------~RAr   78 (243)
T COG1137          11 AKSYKKRKVVNDVSLEVNSGEIVG--LLGPNGAGKTTTFYMIVG-LVRPDSGKILLDDEDITKLPMH---------KRAR   78 (243)
T ss_pred             hHhhCCeeeeeeeeEEEcCCcEEE--EECCCCCCceeEEEEEEE-EEecCCceEEECCcccccCChH---------HHhh
Confidence            333444555555555566665555  999999999999999998 8899999999999766511110         0122


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHHH-----------------------------HhcCCCcCCC------------CCCe
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKEM-----------------------------AKNRPIDTKG------------KRGF  131 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~------------~~~~  131 (248)
                      ..++|.|.+.+.....++++.+..+                             ......++|+            ..+|
T Consensus        79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P  158 (243)
T COG1137          79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANP  158 (243)
T ss_pred             cCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence            3467777766655544444443222                             2223334443            4489


Q ss_pred             eEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeee
Q 025758          132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRI  186 (248)
Q Consensus       132 ~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~  186 (248)
                      +.+++||| .+.||-+...+.+++......+.=|+||.|.-.-.-++++|+.+++=
T Consensus       159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~  214 (243)
T COG1137         159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISD  214 (243)
T ss_pred             CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEec
Confidence            99999999 89999999999999988877777888887776666688899866543

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.38  E-value=3.3e-13  Score=106.56  Aligned_cols=159  Identities=17%  Similarity=0.251  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee-------eecccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT-------TLSSAN   93 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~   93 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.++..........+-.+       ..+..+
T Consensus        15 ~l~~v~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e   91 (205)
T cd03226          15 ILDDLSLDLYAGE--IIALTGKNGAGKTTLAKILAG-LIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE   91 (205)
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence            4444545555553  366999999999999999998 668889999888865421000000000000       001111


Q ss_pred             eeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHH
Q 025758           94 HVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (248)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le  155 (248)
                      ++.+.....+ .....+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....+.+.+.
T Consensus        92 ~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  170 (205)
T cd03226          92 ELLLGLKELD-AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR  170 (205)
T ss_pred             HHhhhhhhcC-ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            1111110000 0111233333322     1222333442            448999999999 8999999999999998


Q ss_pred             HhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          156 KYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       156 ~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +... +..+|++||+... ...+.+|+..+
T Consensus       171 ~~~~~~~tii~~sH~~~~-~~~~~d~i~~l  199 (205)
T cd03226         171 ELAAQGKAVIVITHDYEF-LAKVCDRVLLL  199 (205)
T ss_pred             HHHHCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            8743 4567777776554 44566666444

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.38  E-value=1.6e-12  Score=103.29  Aligned_cols=160  Identities=14%  Similarity=0.274  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT--------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------   88 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.++....+..    .....+..        
T Consensus        16 ~l~~~sl~i~~G~--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~   92 (214)
T cd03292          16 ALDGINISISAGE--FVFLVGPSGAGKSTLLKLIYK-EELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD   92 (214)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence            3444444444443  367999999999999999998 66788899988886543111100    00000000        


Q ss_pred             ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      .+..+++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+...
T Consensus        93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  172 (214)
T cd03292          93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT  172 (214)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence            000111110000000000   01122222221     1122233442            448999999999 89999999


Q ss_pred             HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+.+.+.+... ...+|++||+... ...+.+|+..+
T Consensus       173 ~~~~~~l~~~~~~~~tiiivtH~~~~-~~~~~d~i~~l  209 (214)
T cd03292         173 WEIMNLLKKINKAGTTVVVATHAKEL-VDTTRHRVIAL  209 (214)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            999999988743 4567777776543 34555655443

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.38  E-value=1.3e-12  Score=111.86  Aligned_cols=159  Identities=16%  Similarity=0.272  Sum_probs=92.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSAN   93 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~   93 (248)
                      +++.+...+..|.  .+.|.||||+|||||+++|++ +..+.+|.+.+++..+....+... ..+-.+      ..++.+
T Consensus        18 vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLL~~iaG-l~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~e   94 (369)
T PRK11000         18 ISKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAG-LEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE   94 (369)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHH
Confidence            3444555555543  467999999999999999998 778899999998876542111110 000000      001111


Q ss_pred             eeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758           94 HVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (248)
Q Consensus        94 ~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~  152 (248)
                      ++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....+.+
T Consensus        95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~  174 (369)
T PRK11000         95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI  174 (369)
T ss_pred             HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            1111110001110   01122222221     1223334442            458999999999 8999999999999


Q ss_pred             HHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       153 ~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .|.+...  +..+|++||+...+ ..+.+|+.+
T Consensus       175 ~L~~l~~~~g~tvI~vTHd~~~~-~~~~d~i~v  206 (369)
T PRK11000        175 EISRLHKRLGRTMIYVTHDQVEA-MTLADKIVV  206 (369)
T ss_pred             HHHHHHHHhCCEEEEEeCCHHHH-HHhCCEEEE
Confidence            9987743  46788888776543 466677643

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.38  E-value=7.1e-12  Score=103.88  Aligned_cols=182  Identities=15%  Similarity=0.096  Sum_probs=105.5

Q ss_pred             CCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce
Q 025758            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (248)
Q Consensus         7 y~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (248)
                      |.|.-=.+.+-..+....+..++..+  .+++|.||+|+||||+++.+|..+..+-   +++.+...-            
T Consensus        39 ~~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~~---~rV~~~~~l------------  101 (327)
T TIGR01650        39 HVPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWPC---VRVNLDSHV------------  101 (327)
T ss_pred             CCCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCCe---EEEEecCCC------------
Confidence            34444445555666666666666543  3699999999999999999999874332   111111000            


Q ss_pred             eeecccceeee---CCCCcCcchhHHHHHHHHHHHhcCCCcC-CCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh-----
Q 025758           87 TTLSSANHVEL---SPSDAGFQDRYVVQEVIKEMAKNRPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----  157 (248)
Q Consensus        87 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~-----  157 (248)
                         ...+.++.   ...+..     ...       ......+ .....+.++++||++...+..++.|..++|..     
T Consensus       102 ---~~~DliG~~~~~l~~g~-----~~~-------~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i  166 (327)
T TIGR01650       102 ---SRIDLVGKDAIVLKDGK-----QIT-------EFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTL  166 (327)
T ss_pred             ---ChhhcCCCceeeccCCc-----cee-------EEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEE
Confidence               00000110   000000     000       0000000 01124568999999999999999999999831     


Q ss_pred             c---------CCeeEEEEecCCC------------cccHHHhhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758          158 S---------ASCRLILCCNSSS------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (248)
Q Consensus       158 ~---------~~~~~Il~t~~~~------------~~~~~l~sR~~-~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~  215 (248)
                      .         ..-.+|.+.|...            .+.+++.+|+. ++.+++|+.+...+|+......-.-..+++.++
T Consensus       167 ~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~  246 (327)
T TIGR01650       167 LDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIIN  246 (327)
T ss_pred             CCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHH
Confidence            1         1123455555421            47899999995 578999999999999986542211011355666


Q ss_pred             HHHHH
Q 025758          216 RLAEK  220 (248)
Q Consensus       216 ~l~~~  220 (248)
                      ++++.
T Consensus       247 ~mV~l  251 (327)
T TIGR01650       247 AMVRV  251 (327)
T ss_pred             HHHHH
Confidence            66543

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.38  E-value=2e-11  Score=103.93  Aligned_cols=108  Identities=19%  Similarity=0.301  Sum_probs=77.1

Q ss_pred             CCeeEEEEeCCCCCC------------HHHHHHHHHHHHHhcCC----------eeEEEEe----cCCCcccHHHhhhh-
Q 025758          129 RGFKVLVLNEVDKLS------------REAQHSLRRTMEKYSAS----------CRLILCC----NSSSKVTEAIRSRC-  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~------------~~~~~~ll~~le~~~~~----------~~~Il~t----~~~~~~~~~l~sR~-  181 (248)
                      .+..|++|||+|.+.            ...|.+||+++|...-+          ..||+..    ..+.++.|.|..|+ 
T Consensus       246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P  325 (441)
T TIGR00390       246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP  325 (441)
T ss_pred             HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence            467799999999874            23689999999964221          2244332    24567999999999 


Q ss_pred             heeeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHcc--------ccHHHHHHHHHHHh
Q 025758          182 LNIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKSN--------RSLRRAILSFETCR  236 (248)
Q Consensus       182 ~~i~~~~~~~~~~~~il~~----~-------~~~~~~--~~~~~~~~~l~~~~~--------g~~r~~~~~l~~~~  236 (248)
                      ..+.+.+++.+++..||..    .       +..+|+  .++++++..|++.+-        --+|.+-..++...
T Consensus       326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l  401 (441)
T TIGR00390       326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL  401 (441)
T ss_pred             eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence            6899999999999999832    2       333555  478999999997652        23666666666555

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.38  E-value=2.2e-13  Score=115.75  Aligned_cols=156  Identities=17%  Similarity=0.307  Sum_probs=91.1

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-------cccccceee------e
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-------RNIDLELTT------L   89 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~------~   89 (248)
                      +.+...+..|.  .+.|.||+|+|||||++++++ +..+.+|.+.++|.++....+.       ....+-++.      .
T Consensus        10 ~~vs~~i~~Ge--i~~l~G~sGsGKSTLLr~L~G-l~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~   86 (363)
T TIGR01186        10 NDADLAIAKGE--IFVIMGLSGSGKSTTVRMLNR-LIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM   86 (363)
T ss_pred             EeeEEEEcCCC--EEEEECCCCChHHHHHHHHhC-CCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence            34444444443  367999999999999999998 7789999999999766521111       000000000      0


Q ss_pred             cccceeeeCCCCcCcch---hHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758           90 SSANHVELSPSDAGFQD---RYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (248)
                      ++.+++.+.....+...   ...+.+.++.     .....+..+|+            ..+|+++++||| ..||+....
T Consensus        87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~  166 (363)
T TIGR01186        87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRD  166 (363)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            11111111111111110   0112222221     12233444553            458999999999 899999999


Q ss_pred             HHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758          149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       149 ~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      .+.+.+.+...  +..+|++||+.... ..+.+|+.
T Consensus       167 ~l~~~l~~l~~~~~~Tii~vTHd~~ea-~~~~drI~  201 (363)
T TIGR01186       167 SMQDELKKLQATLQKTIVFITHDLDEA-IRIGDRIV  201 (363)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence            99999987643  45688888876654 35667763

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=4.6e-12  Score=102.86  Aligned_cols=141  Identities=18%  Similarity=0.337  Sum_probs=92.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcC---c-chhHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG---F-QDRYVVQE  112 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~  112 (248)
                      ++++||||||||+|.+++|+.+.-+..+.                 |+..+      .++++..+.-   + ..+.-+..
T Consensus       180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~-----------------y~~~~------liEinshsLFSKWFsESgKlV~k  236 (423)
T KOG0744|consen  180 ILLHGPPGTGKTSLCKALAQKLSIRTNDR-----------------YYKGQ------LIEINSHSLFSKWFSESGKLVAK  236 (423)
T ss_pred             EEEeCCCCCChhHHHHHHHHhheeeecCc-----------------cccce------EEEEehhHHHHHHHhhhhhHHHH
Confidence            89999999999999999999874322111                 11111      1333333221   1 12223455


Q ss_pred             HHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH---------------HHHHHHHHHHHHhcC--CeeEEEEecCCCcccH
Q 025758          113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------------EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTE  175 (248)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---------------~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~  175 (248)
                      +++++.+....    .+.--.++|||++.+..               .+.|+++.-+++...  |..++.++|-.+.+..
T Consensus       237 mF~kI~ELv~d----~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~  312 (423)
T KOG0744|consen  237 MFQKIQELVED----RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDV  312 (423)
T ss_pred             HHHHHHHHHhC----CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHH
Confidence            55555543322    44556789999987631               246788888887743  3444444555568999


Q ss_pred             HHhhhh-heeeecCCCHHHHHHHHHHHHHH
Q 025758          176 AIRSRC-LNIRINSPTEEQIVKVLEFIAKK  204 (248)
Q Consensus       176 ~l~sR~-~~i~~~~~~~~~~~~il~~~~~~  204 (248)
                      ++.+|. .+....+|+...+.+|++..++.
T Consensus       313 AfVDRADi~~yVG~Pt~~ai~~IlkscieE  342 (423)
T KOG0744|consen  313 AFVDRADIVFYVGPPTAEAIYEILKSCIEE  342 (423)
T ss_pred             HhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence            999999 57788999999999999987664

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.38  E-value=1.5e-12  Score=110.93  Aligned_cols=160  Identities=14%  Similarity=0.254  Sum_probs=93.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCc--ccceecccceeeccCCcc-ccccee------eecc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAGSRN-IDLELT------TLSS   91 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~   91 (248)
                      +++.+...+..|.  .+.|.||+|+||||+++++|+ +..+++  |.+.++|..+....+... ..+-++      ..++
T Consensus        20 ~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaG-l~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv   96 (362)
T TIGR03258        20 VLDDLSLEIEAGE--LLALIGKSGCGKTTLLRAIAG-FVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV   96 (362)
T ss_pred             EEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcH
Confidence            3344444444443  367999999999999999998 778899  999999876531111110 000000      0111


Q ss_pred             cceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHH
Q 025758           92 ANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSL  150 (248)
Q Consensus        92 ~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~l  150 (248)
                      .+++.+.....+...   ...+.++++.+     ....+..+|+            ..+|+++++||| ..||+.....+
T Consensus        97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l  176 (362)
T TIGR03258        97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM  176 (362)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence            111211111011110   11122222221     2223334442            458999999999 89999999999


Q ss_pred             HHHHHHhcC---CeeEEEEecCCCcccHHHhhhhhee
Q 025758          151 RRTMEKYSA---SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       151 l~~le~~~~---~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...|.+...   +..+|++||+..+. ..+.+|+.++
T Consensus       177 ~~~l~~l~~~~~g~til~vTHd~~ea-~~l~dri~vl  212 (362)
T TIGR03258       177 REEIAALHEELPELTILCVTHDQDDA-LTLADKAGIM  212 (362)
T ss_pred             HHHHHHHHHhCCCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence            999987654   35677887776654 4677777443

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR00368 Mg chelatase-related protein

Probab=99.37  E-value=3.4e-11  Score=106.26  Aligned_cols=170  Identities=21%  Similarity=0.266  Sum_probs=101.3

Q ss_pred             CCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (248)
                      .+|++++||..+++.+...+..+  .+++|.||||+||||+++.+++ +..+..+...+....+....+.-..  ... .
T Consensus       189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~-llp~~~~~~~le~~~i~s~~g~~~~--~~~-~  262 (499)
T TIGR00368       189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQG-ILPPLTNEEAIETARIWSLVGKLID--RKQ-I  262 (499)
T ss_pred             CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhc-ccCCCCCcEEEeccccccchhhhcc--ccc-c
Confidence            37899999999999999888655  3699999999999999999998 5566665554444322211110000  000 0


Q ss_pred             cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----------
Q 025758           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------  158 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----------  158 (248)
                      ....+..  +.-..     +....+.......+..+ ...+..+++|||++.+++..++.|+..||+..           
T Consensus       263 ~~~Pf~~--p~~s~-----s~~~~~ggg~~~~pG~i-~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~  334 (499)
T TIGR00368       263 KQRPFRS--PHHSA-----SKPALVGGGPIPLPGEI-SLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIF  334 (499)
T ss_pred             ccCCccc--ccccc-----chhhhhCCccccchhhh-hccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCccee
Confidence            0000000  00000     00000000000011111 13355799999999999999999999998642           


Q ss_pred             --CCeeEEEEecCC-----------------------CcccHHHhhhh-heeeecCCCHHH
Q 025758          159 --ASCRLILCCNSS-----------------------SKVTEAIRSRC-LNIRINSPTEEQ  193 (248)
Q Consensus       159 --~~~~~Il~t~~~-----------------------~~~~~~l~sR~-~~i~~~~~~~~~  193 (248)
                        .+..+|.++|.-                       ..+..+|.+|+ ..+.+++++.++
T Consensus       335 ~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~  395 (499)
T TIGR00368       335 YPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK  395 (499)
T ss_pred             ccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence              335577777742                       14888999999 567777765544

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.37  E-value=5.7e-12  Score=96.13  Aligned_cols=141  Identities=18%  Similarity=0.227  Sum_probs=80.9

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc-ceeeccCCcccccceeeecccceeeeCCC
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK-TWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      .+.+...+.+|.  .+.+.||||+||||+++++++ +..+.+|.+.+++. .+.+......    +...+..+++.+. .
T Consensus        17 l~~i~l~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~~~~~i~~~~q~~~----~~~~tv~~nl~~~-~   88 (166)
T cd03223          17 LKDLSFEIKPGD--RLLITGPSGTGKSSLFRALAG-LWPWGSGRIGMPEGEDLLFLPQRPY----LPLGTLREQLIYP-W   88 (166)
T ss_pred             eecCeEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCCceEEEECCCCc----cccccHHHHhhcc-C
Confidence            334444444443  367999999999999999998 66788888877652 1111111000    0001111112110 0


Q ss_pred             CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhh
Q 025758          101 DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS  179 (248)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~s  179 (248)
                      ....+..+..+-.+....         ..+|+++++||| ..+|+.....+.+.+.+.  ...+|++||+.. .. .+.+
T Consensus        89 ~~~LS~G~~~rv~laral---------~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~-~~-~~~d  155 (166)
T cd03223          89 DDVLSGGEQQRLAFARLL---------LHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS-LW-KFHD  155 (166)
T ss_pred             CCCCCHHHHHHHHHHHHH---------HcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh-HH-hhCC
Confidence            111122221111111111         237889999999 799999999999999876  366888888864 33 4666


Q ss_pred             hhhe
Q 025758          180 RCLN  183 (248)
Q Consensus       180 R~~~  183 (248)
                      |+..
T Consensus       156 ~i~~  159 (166)
T cd03223         156 RVLD  159 (166)
T ss_pred             EEEE
Confidence            6543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.37  E-value=7.7e-13  Score=106.71  Aligned_cols=147  Identities=19%  Similarity=0.182  Sum_probs=81.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee---------ecccceeeeCCCCcCcch
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT---------LSSANHVELSPSDAGFQD  106 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  106 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.+++..................         .++.+.+.+.....+...
T Consensus        49 ~~~i~G~NGsGKSTLl~~i~G-l~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~  127 (236)
T cd03267          49 IVGFIGPNGAGKTTTLKILSG-LLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP  127 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH
Confidence            377999999999999999998 6678889998887643210000000000000         000000000000000000


Q ss_pred             h---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeE
Q 025758          107 R---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRL  163 (248)
Q Consensus       107 ~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~  163 (248)
                      .   ..+.+.++.+     .......+|+            ..+|+++++||| ..||+.....+.++|.+...  +..+
T Consensus       128 ~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti  207 (236)
T cd03267         128 ARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV  207 (236)
T ss_pred             HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEE
Confidence            0   0111222211     1111223332            458999999999 89999999999999998743  3567


Q ss_pred             EEEecCCCcccHHHhhhhhee
Q 025758          164 ILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       164 Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      |++||+.+ ....+.+|+..+
T Consensus       208 iivsH~~~-~~~~~~d~i~~l  227 (236)
T cd03267         208 LLTSHYMK-DIEALARRVLVI  227 (236)
T ss_pred             EEEecCHH-HHHHhCCEEEEE
Confidence            77776654 445666666544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.37  E-value=2.4e-12  Score=102.92  Aligned_cols=160  Identities=18%  Similarity=0.224  Sum_probs=88.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT--------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------   88 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.++.......    .....+..        
T Consensus        17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~   93 (222)
T PRK10908         17 ALQGVTFHMRPGE--MAFLTGHSGAGKSTLLKLICG-IERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD   93 (222)
T ss_pred             EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence            3344444444443  367999999999999999998 66788999988886543111100    00000000        


Q ss_pred             ecccceeeeCCCCcCcchhH---HHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           89 LSSANHVELSPSDAGFQDRY---VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      .+..+++.+.....+.....   .+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..+
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  173 (222)
T PRK10908         94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS  173 (222)
T ss_pred             ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence            00111111100000111111   122222221     1222334442            458999999999 89999999


Q ss_pred             HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+.+++.+... +..+|++||+... ...+.+|+..+
T Consensus       174 ~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l  210 (222)
T PRK10908        174 EGILRLFEEFNRVGVTVLMATHDIGL-ISRRSYRMLTL  210 (222)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            999999988744 3567777776544 44555666444

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.37  E-value=2e-12  Score=103.29  Aligned_cols=159  Identities=14%  Similarity=0.210  Sum_probs=88.6

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----cccccceee------ecc
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT------LSS   91 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~   91 (248)
                      .+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.+++.......+.    ....+-.+.      .+.
T Consensus        16 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   92 (222)
T cd03224          16 LFGVSLTVPEGE--IVALLGRNGAGKTTLLKTIMG-LLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV   92 (222)
T ss_pred             eeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence            334444444443  367999999999999999998 6688899999888654311110    000000000      011


Q ss_pred             cceeeeCCCCcC-cchhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           92 ANHVELSPSDAG-FQDRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        92 ~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      .+++.+...... ......+.+.++.+      .......+|+            ..+|+++++||| ..||+.....+.
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  172 (222)
T cd03224          93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF  172 (222)
T ss_pred             HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence            111111100000 00111122222222      1222223442            458999999999 899999999999


Q ss_pred             HHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          152 RTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       152 ~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +++.+... +..+|++||+.. ....+.+|+..+
T Consensus       173 ~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  205 (222)
T cd03224         173 EAIRELRDEGVTILLVEQNAR-FALEIADRAYVL  205 (222)
T ss_pred             HHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEe
Confidence            99988753 456667766644 444666766443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=99.37  E-value=1e-11  Score=109.81  Aligned_cols=200  Identities=17%  Similarity=0.182  Sum_probs=130.4

Q ss_pred             HHHHHhhcCCCC-eeEEECCCCCCHHHHHHHHHHHHc-------CCCcccceecccceeeccCCcccccceeeeccccee
Q 025758           24 NLKKLVTEQDCP-HLLFYGPPGSGKKTLIMALLRQVF-------GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        24 ~l~~~~~~~~~~-~ill~Gp~G~GKTtla~~ia~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      .+...+...... -++++|-||||||.+++.+...|.       ++....+.++|..++  .+..          ....+
T Consensus       411 f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~--~~~~----------~Y~~I  478 (767)
T KOG1514|consen  411 FLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA--SPRE----------IYEKI  478 (767)
T ss_pred             HHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec--CHHH----------HHHHH
Confidence            334444452333 499999999999999999999887       556666666665443  1100          01112


Q ss_pred             eeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-CCe--eEEEEecCCC-
Q 025758           96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASC--RLILCCNSSS-  171 (248)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-~~~--~~Il~t~~~~-  171 (248)
                      ..................-..+.     .-+....+.|++|||+|.|=...|..|+.+++.+. ++.  .+|.++|... 
T Consensus       479 ~~~lsg~~~~~~~al~~L~~~f~-----~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl  553 (767)
T KOG1514|consen  479 WEALSGERVTWDAALEALNFRFT-----VPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL  553 (767)
T ss_pred             HHhcccCcccHHHHHHHHHHhhc-----cCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence            21121222222221222112222     11135678899999999886667888888998774 233  4566666653 


Q ss_pred             ---cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---ccccHHHHHHHHHHHhhhccc
Q 025758          172 ---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK---SNRSLRRAILSFETCRVQQLR  241 (248)
Q Consensus       172 ---~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~---~~g~~r~~~~~l~~~~~~~~~  241 (248)
                         .+...+.||.  ..+.|.||+-+++..++..++... ..++.++++.+++.   ..||+|.+++++..+...+..
T Consensus       554 PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~  630 (767)
T KOG1514|consen  554 PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEE  630 (767)
T ss_pred             HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhh
Confidence               2444667787  789999999999999999887665 35678888888744   479999999999998866553

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.37  E-value=5.9e-11  Score=106.00  Aligned_cols=201  Identities=16%  Similarity=0.170  Sum_probs=122.0

Q ss_pred             CCCCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (248)
                      ...+|++++|.....+.+...+..  .....++|+|++||||+++|+++-..-......-+.+++.              
T Consensus       199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca--------------  264 (520)
T PRK10820        199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCA--------------  264 (520)
T ss_pred             ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccc--------------
Confidence            346889999987766655544431  1223499999999999999999865322222122222221              


Q ss_pred             eeeecccceeeeCCCCcCcchhHHHHHHHHHHHh------cCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-
Q 025758           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK------NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-  158 (248)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-  158 (248)
                                     ...  +...-.+.+.....      ....++....+...++|||++.|++..|..|+.++++.. 
T Consensus       265 ---------------~~~--~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~  327 (520)
T PRK10820        265 ---------------SIP--DDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF  327 (520)
T ss_pred             ---------------cCC--HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCc
Confidence                           110  00000000000000      000011112345689999999999999999999997631 


Q ss_pred             ----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHH----HHHcC---CCCC
Q 025758          159 ----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFI----AKKEG---LQLP  210 (248)
Q Consensus       159 ----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~----~~~~~---~~~~  210 (248)
                                .+.++|++|+...       .+.+.|..|.  ..|.+||+.+  +++..++...    +.+.+   ..++
T Consensus       328 ~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls  407 (520)
T PRK10820        328 RRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA  407 (520)
T ss_pred             ccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence                      2346888776653       3556787886  4677777754  3444433333    33333   3688


Q ss_pred             HHHHHHHHHH-ccccHHHHHHHHHHHhhhc
Q 025758          211 SGFATRLAEK-SNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       211 ~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~  239 (248)
                      +++++.|... ..||+|++.|.++.+....
T Consensus       408 ~~a~~~L~~y~WPGNvreL~nvl~~a~~~~  437 (520)
T PRK10820        408 ADLNTVLTRYGWPGNVRQLKNAIYRALTQL  437 (520)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999988 7999999999999888643

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.37  E-value=2.6e-12  Score=103.15  Aligned_cols=159  Identities=18%  Similarity=0.247  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-----ccccceee-------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-----NIDLELTT-------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------   88 (248)
                      +.+.+...+.+|.  .+.|.||||+|||||++++++ +..+..|.+.++|..+....+..     ........       
T Consensus        25 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~  101 (228)
T PRK10584         25 ILTGVELVVKRGE--TIALIGESGSGKSTLLAILAG-LDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP  101 (228)
T ss_pred             EEeccEEEEcCCC--EEEEECCCCCCHHHHHHHHHc-CCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence            3444555555543  467999999999999999998 66888999988886543111100     00000000       


Q ss_pred             -ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           89 -LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        89 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                       .+..+++.+.....+...   ...+.+.++.+     ....+..+|+            ..+++++++||| ..||+..
T Consensus       102 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~  181 (228)
T PRK10584        102 TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT  181 (228)
T ss_pred             CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence             000011110000000000   11122222221     1122333442            458999999999 7999999


Q ss_pred             HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+.+.+.+...  +..+|++||+...+ .. .+|+.++
T Consensus       182 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~-~~-~d~i~~l  219 (228)
T PRK10584        182 GDKIADLLFSLNREHGTTLILVTHDLQLA-AR-CDRRLRL  219 (228)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHH-Hh-CCEEEEE
Confidence            9999999988743  46788888887643 33 5655443

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.36  E-value=8.1e-11  Score=105.04  Aligned_cols=198  Identities=15%  Similarity=0.173  Sum_probs=124.6

Q ss_pred             CcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (248)
                      +..+++|+....+.+...+..  ....+++|+|++||||+++|+++-.........-+.+++..+.              
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~--------------  250 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP--------------  250 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC--------------
Confidence            568899988888777766643  2233499999999999999999997432222222222221110              


Q ss_pred             ecccceeeeCCCCcCcchhHHHH-HHHHHHH------hcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 025758           89 LSSANHVELSPSDAGFQDRYVVQ-EVIKEMA------KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---  158 (248)
                                       + ..+. +.+....      .....+.....+...++|||++.|+...+..|++++++..   
T Consensus       251 -----------------~-~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~  312 (509)
T PRK05022        251 -----------------E-SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQR  312 (509)
T ss_pred             -----------------h-HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEee
Confidence                             0 0000 0000000      0000001113345679999999999999999999997532   


Q ss_pred             --------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHH----H---cCCCCCHH
Q 025758          159 --------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----K---EGLQLPSG  212 (248)
Q Consensus       159 --------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~----~---~~~~~~~~  212 (248)
                              .++++|++|+...       .+.+.|-.|+  ..|.+||+..  +++..++...+.    +   ....++++
T Consensus       313 ~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~  392 (509)
T PRK05022        313 VGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA  392 (509)
T ss_pred             CCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence                    2457888887653       3556666666  4577777753  344444443332    2   23568999


Q ss_pred             HHHHHHHHc-cccHHHHHHHHHHHhhhcc
Q 025758          213 FATRLAEKS-NRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       213 ~~~~l~~~~-~g~~r~~~~~l~~~~~~~~  240 (248)
                      ++..|.... .||+|++.|.++.++..+.
T Consensus       393 a~~~L~~y~WPGNvrEL~~~i~ra~~~~~  421 (509)
T PRK05022        393 AQAALLAYDWPGNVRELEHVISRAALLAR  421 (509)
T ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence            999998774 8999999999999887544

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.36  E-value=8.4e-12  Score=92.91  Aligned_cols=111  Identities=16%  Similarity=0.298  Sum_probs=75.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHH-
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI-  114 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  114 (248)
                      .+.+.||||+||||+++++++ +..+..|.+.+++..                     .+.+.+.   .+..+..+-.+ 
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~~~~---------------------~i~~~~~---lS~G~~~rv~la   82 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAG-ELEPDEGIVTWGSTV---------------------KIGYFEQ---LSGGEKMRLALA   82 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcC-CCCCCceEEEECCeE---------------------EEEEEcc---CCHHHHHHHHHH
Confidence            467999999999999999998 667788888776630                     1333332   22222222112 


Q ss_pred             HHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          115 KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+.          .+|+++++||| ..+|......+.+.+.+.  ...++++|++.+.+ ..+.+|+.++
T Consensus        83 ral~----------~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~-~~~~d~v~~l  140 (144)
T cd03221          83 KLLL----------ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL-DQVATKIIEL  140 (144)
T ss_pred             HHHh----------cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH-HHhCCEEEEE
Confidence            2222          26789999999 799999999999999876  34667777765443 4666666444

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.36  E-value=2.3e-12  Score=103.92  Aligned_cols=160  Identities=16%  Similarity=0.205  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--ccccce--ee------ec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLEL--TT------LS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~------~~   90 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+..  .....+  +.      .+
T Consensus        15 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t   91 (236)
T cd03219          15 ALDDVSFSVRPGE--IHGLIGPNGAGKTTLFNLISG-FLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT   91 (236)
T ss_pred             EecCceEEecCCc--EEEEECCCCCCHHHHHHHHcC-CCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence            3444444555443  367999999999999999998 66788899988886543111100  000000  00      01


Q ss_pred             ccceeeeCCCCc-Cc---------c---hhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           91 SANHVELSPSDA-GF---------Q---DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        91 ~~~~~~~~~~~~-~~---------~---~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                      +.+++.+..... ..         .   ....+.+.++.+.     ......+|+            ..+|+++++||| 
T Consensus        92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  171 (236)
T cd03219          92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA  171 (236)
T ss_pred             HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            111111110000 00         0   0111222232221     111223332            448999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~-~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..||+.....+.+.+.+.. .+..+|++||+.. ....+.+|+..+
T Consensus       172 ~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l  216 (236)
T cd03219         172 AGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVL  216 (236)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence            8999999999999998875 3456777777655 444667776444

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.36  E-value=6e-13  Score=107.67  Aligned_cols=160  Identities=18%  Similarity=0.306  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC---C--cccccceee------e
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---S--RNIDLELTT------L   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~------~   89 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++.....   .  ....+-.+.      .
T Consensus        16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   92 (240)
T PRK09493         16 VLHNIDLNIDQGE--VVVIIGPSGSGKSTLLRCINK-LEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL   92 (240)
T ss_pred             EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence            4445555555543  467999999999999999998 668889999998876531100   0  000000000      0


Q ss_pred             cccceeeeCCCC-cCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           90 SSANHVELSPSD-AGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        90 ~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      ++.+++.+.... .+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..+|+...
T Consensus        93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~  172 (240)
T PRK09493         93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR  172 (240)
T ss_pred             cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            111111111000 00000   01122222221     1122223342            448999999999 89999999


Q ss_pred             HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+.+++.+... +..+|++|++.+. ...+.+|+..+
T Consensus       173 ~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l  209 (240)
T PRK09493        173 HEVLKVMQDLAEEGMTMVIVTHEIGF-AEKVASRLIFI  209 (240)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            999999988753 4567777777654 45677777444

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.36  E-value=3.2e-12  Score=103.16  Aligned_cols=160  Identities=16%  Similarity=0.264  Sum_probs=88.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSAN   93 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~   93 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.+......... ..+..+      ..+..+
T Consensus        15 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e   91 (237)
T TIGR00968        15 ALDDVNLEVPTGS--LVALLGPSGSGKSTLLRIIAG-LEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD   91 (237)
T ss_pred             eeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence            3334444444443  367999999999999999998 667888999888865431111000 000000      000011


Q ss_pred             eeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758           94 HVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (248)
Q Consensus        94 ~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~  152 (248)
                      ++.+.....+...   ...+.+.++.+     .......+|.            ..+|+++++||| ..||......+.+
T Consensus        92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~  171 (237)
T TIGR00968        92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS  171 (237)
T ss_pred             HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence            1111100000000   01112222221     1111223332            448999999999 8999999999999


Q ss_pred             HHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       153 ~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+.+...  ...+|++|++.. ....+.+|+..+
T Consensus       172 ~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l  204 (237)
T TIGR00968       172 WLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVM  204 (237)
T ss_pred             HHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEE
Confidence            9998754  356777766654 445667777443

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.36  E-value=3.3e-12  Score=102.61  Aligned_cols=156  Identities=19%  Similarity=0.319  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--cc-ccccee-----eeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--RN-IDLELT-----TLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~-----~~~~~   92 (248)
                      +++.+...+..|.  .+.+.||||+||||+++++++ +..+..|.+.+++..+......  .. ..+..+     ..+..
T Consensus        18 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~   94 (229)
T cd03254          18 VLKDINFSIKPGE--TVAIVGPTGAGKTTLINLLMR-FYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIM   94 (229)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHH
Confidence            5555555555553  367999999999999999998 6678889998888643210000  00 000000     00111


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHH-----HHHh-----------cCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIK-----EMAK-----------NRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+.....   ....+.+.++     ....           .....+|+            ..+|+++++||| ..||
T Consensus        95 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD  171 (229)
T cd03254          95 ENIRLGRPNA---TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNID  171 (229)
T ss_pred             HHHhccCCCC---CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence            1111111100   0111111111     1111           11233442            458999999999 7999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.....+.+.+.+...+..+|++|++...+ + ..+|+..+
T Consensus       172 ~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~-~~d~i~~l  210 (229)
T cd03254         172 TETEKLIQEALEKLMKGRTSIIIAHRLSTI-K-NADKILVL  210 (229)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEecCHHHH-h-hCCEEEEE
Confidence            999999999998876556788888887654 3 36666444

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.36  E-value=8.8e-13  Score=106.82  Aligned_cols=161  Identities=14%  Similarity=0.277  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc---C-C---cccccceee----
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA---G-S---RNIDLELTT----   88 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~---~-~---~~~~~~~~~----   88 (248)
                      .+.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++....   . .   ......+..    
T Consensus        16 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~   92 (242)
T PRK11124         16 QALFDITLDCPQGE--TLVLLGPSGAGKSSLLRVLNL-LEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN   92 (242)
T ss_pred             eeEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence            34455555555543  477999999999999999998 66888999999887542100   0 0   000000000    


Q ss_pred             ----ecccceeeeCC-CCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758           89 ----LSSANHVELSP-SDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (248)
Q Consensus        89 ----~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l  142 (248)
                          .+..+++.+.. ...+....   ..+.+.++.+     ....+..+|+            ..+|+++++||| ..|
T Consensus        93 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~L  172 (242)
T PRK11124         93 LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL  172 (242)
T ss_pred             ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Confidence                00011110000 00000000   1112222211     1222233442            448999999999 899


Q ss_pred             CHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          143 SREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       143 ~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      |+.....+.+++.+... +..+|++|++.. ....+.+|+.++
T Consensus       173 D~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l  214 (242)
T PRK11124        173 DPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYM  214 (242)
T ss_pred             CHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence            99999999999988754 355666666655 445666776433

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.36  E-value=9e-13  Score=107.71  Aligned_cols=160  Identities=17%  Similarity=0.256  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee------eecc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT------TLSS   91 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~   91 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.+.......   ....+-.+      ..++
T Consensus        17 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   93 (258)
T PRK13548         17 LLDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSG-ELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV   93 (258)
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence            4455555555543  366999999999999999998 6688899999888654211000   00000000      0011


Q ss_pred             cceeeeCCCCcCc--c-hhHHHHHHHHHH-----HhcCCCcCCC------------C------CCeeEEEEeCC-CCCCH
Q 025758           92 ANHVELSPSDAGF--Q-DRYVVQEVIKEM-----AKNRPIDTKG------------K------RGFKVLVLNEV-DKLSR  144 (248)
Q Consensus        92 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~-----~~~~~~~~~~------------~------~~~~viiiDE~-d~l~~  144 (248)
                      .+++.+.......  . ....+.+.++.+     .......+|+            .      .+|+++++||| ..||+
T Consensus        94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~  173 (258)
T PRK13548         94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL  173 (258)
T ss_pred             HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence            1111111100000  0 011122222221     1222334442            2      47899999999 89999


Q ss_pred             HHHHHHHHHHHHhc-C-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          145 EAQHSLRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       145 ~~~~~ll~~le~~~-~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .....+.+.+.+.. . +..+|++||+.. ....+.+|+..+
T Consensus       174 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  214 (258)
T PRK13548        174 AHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLL  214 (258)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEE
Confidence            99999999998875 3 456777776654 445677777443

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.36  E-value=1.3e-12  Score=105.81  Aligned_cols=161  Identities=14%  Similarity=0.255  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccce--------e
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLEL--------T   87 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------~   87 (248)
                      .+.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+..    .....+        .
T Consensus        16 ~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~   92 (243)
T TIGR02315        16 QALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINR-LVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE   92 (243)
T ss_pred             ceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence            35555555555553  367999999999999999998 66788899988886543111000    000000        0


Q ss_pred             eecccceeeeCCCCc--------Cc---chhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC
Q 025758           88 TLSSANHVELSPSDA--------GF---QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV  139 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~  139 (248)
                      ..++.+++.+.....        ..   .....+.+.++.+     ....+..+|+            ..+|+++++|||
T Consensus        93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP  172 (243)
T TIGR02315        93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP  172 (243)
T ss_pred             cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            011111111100000        00   0111222233221     1222334442            458999999999


Q ss_pred             -CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 -DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 -d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                       ..||+.....+.+++.+..+  +..+|++||+... ...+.+|+..+
T Consensus       173 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~-~~~~~d~v~~l  219 (243)
T TIGR02315       173 IASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL-AKKYADRIVGL  219 (243)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEE
Confidence             79999999999999988743  4567777777654 44666776443

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.36  E-value=7.7e-13  Score=107.88  Aligned_cols=156  Identities=19%  Similarity=0.232  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee------eeccc
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT------TLSSA   92 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~   92 (248)
                      ..+.+.+...+.+|.  .+.|.||||+|||||++++++ +..+..|.+.+++.++....  ....+-.+      ..++.
T Consensus        25 ~~il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~--~~i~~v~q~~~l~~~~tv~   99 (257)
T PRK11247         25 RTVLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAG-LETPSAGELLAGTAPLAEAR--EDTRLMFQDARLLPWKKVI   99 (257)
T ss_pred             cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEHHHhh--CceEEEecCccCCCCCcHH
Confidence            344555555555553  366999999999999999998 66788898887775431000  00000000      00111


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHH
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM  154 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~l  154 (248)
                      +++.+...  . .....+.+.++.+     ....+..+|+            ..+++++|+||| ..||+.....+.+.+
T Consensus       100 enl~~~~~--~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L  176 (257)
T PRK11247        100 DNVGLGLK--G-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI  176 (257)
T ss_pred             HHHHhccc--c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            11111100  0 0011122222221     1122334442            448999999999 899999999999999


Q ss_pred             HHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          155 EKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       155 e~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+...  +..+|++||+... ...+.+|+..
T Consensus       177 ~~~~~~~~~tviivsHd~~~-~~~~~d~i~~  206 (257)
T PRK11247        177 ESLWQQHGFTVLLVTHDVSE-AVAMADRVLL  206 (257)
T ss_pred             HHHHHHcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            87632  4567777777654 4566677643

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=4.4e-12  Score=102.64  Aligned_cols=159  Identities=14%  Similarity=0.188  Sum_probs=88.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee------ec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT------LS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~   90 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.++....+..    ...+-.+.      .+
T Consensus        18 ~l~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   94 (241)
T PRK10895         18 VVEDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVG-IVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS   94 (241)
T ss_pred             EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCc
Confidence            4445555555443  367999999999999999998 66888999998886543111100    00000000      01


Q ss_pred             ccceeeeCCCCc-Ccch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758           91 SANHVELSPSDA-GFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (248)
Q Consensus        91 ~~~~~~~~~~~~-~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (248)
                      ..+++.+..... ....   ...+.+.++.+     .......+|+            ..+|+++++||| ..+|+....
T Consensus        95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  174 (241)
T PRK10895         95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI  174 (241)
T ss_pred             HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence            111111110000 0000   11122222221     1112223442            458999999999 799999999


Q ss_pred             HHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       149 ~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+.+++.+... +..+|++||+.. ....+.+|+..
T Consensus       175 ~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~  209 (241)
T PRK10895        175 DIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYI  209 (241)
T ss_pred             HHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEE
Confidence            99999987654 456677776654 44466677643

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=3.2e-12  Score=102.96  Aligned_cols=151  Identities=14%  Similarity=0.213  Sum_probs=85.9

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-------cccccceee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-------RNIDLELTT-----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-----   88 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++......       ....+-.+.     
T Consensus        24 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~  100 (233)
T PRK11629         24 VLHNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGG-LDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP  100 (233)
T ss_pred             eEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence            3444444454443  367999999999999999998 6688899999988755321110       000000000     


Q ss_pred             -ecccceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           89 -LSSANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        89 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                       .+..+++.+.....+....   ..+.+.++.+     ....+..+|+            ..+|+++|+||| ..||+..
T Consensus       101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~  180 (233)
T PRK11629        101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN  180 (233)
T ss_pred             CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence             0111111110000000000   1122222221     1112223332            458999999999 8999999


Q ss_pred             HHHHHHHHHHhc--CCeeEEEEecCCCccc
Q 025758          147 QHSLRRTMEKYS--ASCRLILCCNSSSKVT  174 (248)
Q Consensus       147 ~~~ll~~le~~~--~~~~~Il~t~~~~~~~  174 (248)
                      ...+.+++.+..  .+..+|++||+.+.+.
T Consensus       181 ~~~l~~~l~~~~~~~g~tvii~sH~~~~~~  210 (233)
T PRK11629        181 ADSIFQLLGELNRLQGTAFLVVTHDLQLAK  210 (233)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            999999998874  3467888888876543

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.35  E-value=1.2e-12  Score=105.37  Aligned_cols=148  Identities=16%  Similarity=0.242  Sum_probs=88.9

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.+........ .           .+++.+.
T Consensus        15 il~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~g-~~~~~~G~i~~~g~~~~~~~~~~-~-----------~i~~~~q   79 (232)
T cd03300          15 ALDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAG-FETPTSGEILLDGKDITNLPPHK-R-----------PVNTVFQ   79 (232)
T ss_pred             eeccceEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEcCcCChhh-c-----------ceEEEec
Confidence            4445555555543  477999999999999999998 66788899988886443111000 0           1111111


Q ss_pred             CcCcchh----------------------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758          101 DAGFQDR----------------------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus       101 ~~~~~~~----------------------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                      .......                      ..+.+.++.+     ....+..+|.            ..+|+++++||| .
T Consensus        80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~  159 (232)
T cd03300          80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG  159 (232)
T ss_pred             ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            1111100                      0111111111     1111222331            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .||......+.+++.+...  +..+|++|++...+ +.+.+|+..+
T Consensus       160 gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~-~~~~d~i~~l  204 (232)
T cd03300         160 ALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA-LTMSDRIAVM  204 (232)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhcCEEEEE
Confidence            9999999999999988754  45677777776544 5666777443

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.35  E-value=2.8e-12  Score=103.32  Aligned_cols=160  Identities=16%  Similarity=0.285  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~   92 (248)
                      +.+.+...+..|.  .+.+.||||+||||+++++++ +..+..|.+.++|..+....... .....+       ...++.
T Consensus        17 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~   93 (234)
T cd03251          17 VLRDISLDIPAGE--TVALVGPSGSGKSTLVNLIPR-FYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVA   93 (234)
T ss_pred             ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhc-cccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHH
Confidence            3444444454443  366999999999999999998 66888999988886543111000 000000       001111


Q ss_pred             ceeeeCCCCcCcchhHH------HHHHHHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           93 NHVELSPSDAGFQDRYV------VQEVIKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~------~~~~~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      +++.+............      +.+.++.+       ....+..+|+            ..+|+++++||| ..||+..
T Consensus        94 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~  173 (234)
T cd03251          94 ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES  173 (234)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            11211111100000000      01111111       0111223432            458999999999 8999999


Q ss_pred             HHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758          147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       147 ~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ...+.+.+.+......+|++||+...+ +. .+|+..+.
T Consensus       174 ~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~v~~l~  210 (234)
T cd03251         174 ERLVQAALERLMKNRTTFVIAHRLSTI-EN-ADRIVVLE  210 (234)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCHHHH-hh-CCEEEEec
Confidence            999999999876666788888887665 34 67775543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.35  E-value=5.2e-12  Score=101.01  Aligned_cols=155  Identities=17%  Similarity=0.297  Sum_probs=85.3

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee------eccccee
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSANHV   95 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~   95 (248)
                      .+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.+++........ ....+..+.      .+..+++
T Consensus        16 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~~~~~~~~~~-~~~~~~~q~~~~~~~~t~~~~~   91 (223)
T TIGR03740        16 VNNISLTVPKNS--VYGLLGPNGAGKSTLLKMITG-ILRPTSGEIIFDGHPWTRKDL-HKIGSLIESPPLYENLTARENL   91 (223)
T ss_pred             EeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecccccc-ccEEEEcCCCCccccCCHHHHH
Confidence            334444444432  477999999999999999998 667888999888864321000 000000000      0000000


Q ss_pred             eeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh
Q 025758           96 ELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY  157 (248)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~  157 (248)
                      .+.....+. ....+.+.++.+     ....+..+|+            ..+|+++++||| ..+|+.....+.+++.+.
T Consensus        92 ~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~  170 (223)
T TIGR03740        92 KVHTTLLGL-PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSF  170 (223)
T ss_pred             HHHHHHcCC-CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHH
Confidence            000000000 011122222221     1112223332            458999999999 899999999999999887


Q ss_pred             cC-CeeEEEEecCCCcccHHHhhhhh
Q 025758          158 SA-SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       158 ~~-~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      .. +..+|++||+.. ....+.+|+.
T Consensus       171 ~~~~~tiii~sH~~~-~~~~~~d~i~  195 (223)
T TIGR03740       171 PEQGITVILSSHILS-EVQQLADHIG  195 (223)
T ss_pred             HHCCCEEEEEcCCHH-HHHHhcCEEE
Confidence            54 345666666644 4556667763

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=3.1e-12  Score=108.61  Aligned_cols=159  Identities=19%  Similarity=0.244  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT--------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------   88 (248)
                      +++.+...+..|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+..    .....+..        
T Consensus        20 il~~vsl~i~~Ge--i~~iiG~nGsGKSTLlk~L~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~   96 (343)
T PRK11153         20 ALNNVSLHIPAGE--IFGVIGASGAGKSTLIRCINL-LERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS   96 (343)
T ss_pred             EEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence            3344444455443  366999999999999999998 67889999999887553111100    00000000        


Q ss_pred             ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      .++.+++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+...
T Consensus        97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~  176 (343)
T PRK11153         97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT  176 (343)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            001111111000001100   01122222221     1222334442            458999999999 89999999


Q ss_pred             HHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       148 ~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ..+++++.+...  +..+|++||+.+ ....+.+|+.+
T Consensus       177 ~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~  213 (343)
T PRK11153        177 RSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAV  213 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            999999988753  456777777765 44567777743

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.35  E-value=3.2e-11  Score=102.36  Aligned_cols=201  Identities=19%  Similarity=0.207  Sum_probs=122.4

Q ss_pred             CCCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCC--CcccceecccceeeccCCccccc
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      ...+.++||.....+.+...+..  ....++++.|++|+||+.+|+.|-. +...  ....+.++|..+.          
T Consensus        74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~-~s~r~~~~PFI~~NCa~~~----------  142 (403)
T COG1221          74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHA-LSARRAEAPFIAFNCAAYS----------  142 (403)
T ss_pred             chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHH-hhhcccCCCEEEEEHHHhC----------
Confidence            34567889966655555544432  2223599999999999999999994 3222  2222222221111          


Q ss_pred             ceeeecccceeeeCCCCcCcchhHHHHHHHHH------HHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH--
Q 025758           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKE------MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK--  156 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~--  156 (248)
                                         ....+  .+.+..      -+.....++....+...+++||+..|++..+..|++++++  
T Consensus       143 -------------------en~~~--~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~  201 (403)
T COG1221         143 -------------------ENLQE--AELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGE  201 (403)
T ss_pred             -------------------cCHHH--HHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCc
Confidence                               00000  001100      0112222333455677999999999999999999999997  


Q ss_pred             ---------hcCCeeEEEEecCCC--cccH--HHhhhh--heeeecCCCHH--HHHHHHHHH----HHHcCCC---CCHH
Q 025758          157 ---------YSASCRLILCCNSSS--KVTE--AIRSRC--LNIRINSPTEE--QIVKVLEFI----AKKEGLQ---LPSG  212 (248)
Q Consensus       157 ---------~~~~~~~Il~t~~~~--~~~~--~l~sR~--~~i~~~~~~~~--~~~~il~~~----~~~~~~~---~~~~  212 (248)
                               .+.++++|+.|+...  .+..  ++-.|+  ..|++|++...  ++...++..    +.+.+..   .+++
T Consensus       202 ~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~  281 (403)
T COG1221         202 YRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE  281 (403)
T ss_pred             eEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence                     234567888877663  4565  777766  46777777543  333333333    3333443   2245


Q ss_pred             HHHHHHHH-ccccHHHHHHHHHHHhhhccc
Q 025758          213 FATRLAEK-SNRSLRRAILSFETCRVQQLR  241 (248)
Q Consensus       213 ~~~~l~~~-~~g~~r~~~~~l~~~~~~~~~  241 (248)
                      ++..+... ..||+|++.|.++.+|.....
T Consensus       282 a~~~L~~y~~pGNirELkN~Ve~~~~~~~~  311 (403)
T COG1221         282 ALRALLAYDWPGNIRELKNLVERAVAQASG  311 (403)
T ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence            56665544 699999999999999987763

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=3.2e-11  Score=106.86  Aligned_cols=189  Identities=15%  Similarity=0.203  Sum_probs=120.8

Q ss_pred             CCcccccccHHHHHHHHHHhh----------cCC--CC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758           10 KTLDQVIVHQDIAQNLKKLVT----------EQD--CP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~----------~~~--~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      +.|.|+-|..++++.|...+.          +.+  .+ +++|+||||||||.+|-++|....   -.-+.+-|      
T Consensus       664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~---~~fisvKG------  734 (952)
T KOG0735|consen  664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN---LRFISVKG------  734 (952)
T ss_pred             CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC---eeEEEecC------
Confidence            578899898888888887663          222  22 399999999999999999998431   01111111      


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------H
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E  145 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~  145 (248)
                                        .++.....|. ..+.+++.+....         ...|.|+++||+|.+.|           .
T Consensus       735 ------------------PElL~KyIGa-SEq~vR~lF~rA~---------~a~PCiLFFDEfdSiAPkRGhDsTGVTDR  786 (952)
T KOG0735|consen  735 ------------------PELLSKYIGA-SEQNVRDLFERAQ---------SAKPCILFFDEFDSIAPKRGHDSTGVTDR  786 (952)
T ss_pred             ------------------HHHHHHHhcc-cHHHHHHHHHHhh---------ccCCeEEEeccccccCcccCCCCCCchHH
Confidence                              1111111121 1233666666554         34678999999998853           3


Q ss_pred             HHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025758          146 AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK  220 (248)
Q Consensus       146 ~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~  220 (248)
                      ..|.|+.-++...  .++.++..|++++-+.+++....   ..+.-+.|+..+..+|++....+.... ++-.++-++..
T Consensus       787 VVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~  865 (952)
T KOG0735|consen  787 VVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQK  865 (952)
T ss_pred             HHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhh
Confidence            4667777776432  33456666788888999998755   478889999999999998766544332 23446777766


Q ss_pred             ccc----cHHHHHHHHHHHh
Q 025758          221 SNR----SLRRAILSFETCR  236 (248)
Q Consensus       221 ~~g----~~r~~~~~l~~~~  236 (248)
                      ++|    |+..++-..+..+
T Consensus       866 T~g~tgADlq~ll~~A~l~a  885 (952)
T KOG0735|consen  866 TDGFTGADLQSLLYNAQLAA  885 (952)
T ss_pred             cCCCchhhHHHHHHHHHHHH
Confidence            543    5555544444333

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.35  E-value=3.5e-12  Score=101.90  Aligned_cols=159  Identities=13%  Similarity=0.197  Sum_probs=88.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-------ccccceee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-------NIDLELTT-----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-----   88 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++.......       ...+-.+.     
T Consensus        20 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~   96 (221)
T TIGR02211        20 VLKGVSLSIGKGE--IVAIVGSSGSGKSTLLHLLGG-LDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP   96 (221)
T ss_pred             eEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence            3444444555543  366999999999999999998 66888999998886543111100       00000000     


Q ss_pred             -ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           89 -LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        89 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                       .+..+.+.+.........   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..
T Consensus        97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~  176 (221)
T TIGR02211        97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN  176 (221)
T ss_pred             CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence             001111111000000000   11122222221     1122233442            458999999999 7999999


Q ss_pred             HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+.+.+.+...  +..+|++||+...+ .. .+|+..+
T Consensus       177 ~~~l~~~l~~~~~~~~~tii~~tH~~~~~-~~-~d~v~~l  214 (221)
T TIGR02211       177 AKIIFDLMLELNRELNTSFLVVTHDLELA-KK-LDRVLEM  214 (221)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hh-cCEEEEE
Confidence            9999999987743  45788888887644 33 3555443

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.35  E-value=3.4e-12  Score=101.49  Aligned_cols=148  Identities=16%  Similarity=0.226  Sum_probs=83.7

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC---Ccccccceeeec----------ccceeeeCCCC
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLELTTLS----------SANHVELSPSD  101 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~  101 (248)
                      ..+.|.||||+||||+++++++ +..+.+|.+.++|.+......   ..........+.          ..+++.+....
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~  102 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAG-LEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKR  102 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhh
Confidence            4477999999999999999998 667888999888865431100   000000000000          00001000000


Q ss_pred             cCc-chhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--C
Q 025758          102 AGF-QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--S  160 (248)
Q Consensus       102 ~~~-~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~  160 (248)
                      ... .....+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....+.+++.+...  +
T Consensus       103 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  182 (214)
T cd03297         103 KRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN  182 (214)
T ss_pred             CCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence            000 0001122222221     1222334442            458999999999 89999999999999988743  4


Q ss_pred             eeEEEEecCCCcccHHHhhhhhee
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|++||+...+ ..+.+|+.++
T Consensus       183 ~tiii~sH~~~~~-~~~~d~i~~l  205 (214)
T cd03297         183 IPVIFVTHDLSEA-EYLADRIVVM  205 (214)
T ss_pred             cEEEEEecCHHHH-HHhcCEEEEE
Confidence            5677777776543 4666666444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.35  E-value=5.3e-12  Score=100.76  Aligned_cols=156  Identities=16%  Similarity=0.236  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc---cccccee-----eeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELT-----TLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~   92 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.......+..   ...+-.+     ..+..
T Consensus        19 ~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~   95 (220)
T cd03245          19 ALDNVSLTIRAGE--KVAIIGRVGSGKSTLLKLLAG-LYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLR   95 (220)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHH
Confidence            4445555555553  366999999999999999998 56788898888886432100000   0000000     00111


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+....   .....+.+.++.     .....+           ..+|+            ..+|+++++||| ..||
T Consensus        96 e~l~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD  172 (220)
T cd03245          96 DNITLGAPL---ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD  172 (220)
T ss_pred             HHhhcCCCC---CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence            112111100   011112222211     111111           24442            458999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.....+.+.+.+......+|++||+... . .+.+|+..+
T Consensus       173 ~~~~~~l~~~l~~~~~~~tii~~sH~~~~-~-~~~d~v~~l  211 (220)
T cd03245         173 MNSEERLKERLRQLLGDKTLIIITHRPSL-L-DLVDRIIVM  211 (220)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeCCHHH-H-HhCCEEEEE
Confidence            99999999999987655677888888763 4 477776544

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.35  E-value=7e-13  Score=105.33  Aligned_cols=160  Identities=18%  Similarity=0.267  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee---ccCCcccccce---eeecccce
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI---DAGSRNIDLEL---TTLSSANH   94 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~   94 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|..+..   ...........   ...++.++
T Consensus        14 ~l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~   90 (213)
T cd03235          14 VLEDVSFEVKPGE--FLAIVGPNGAGKSTLLKAILG-LLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV   90 (213)
T ss_pred             eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence            4455555555554  366999999999999999998 668888999888854310   00000000000   00111111


Q ss_pred             eeeCCCCc-C------cchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           95 VELSPSDA-G------FQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        95 ~~~~~~~~-~------~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      +.+..... .      ......+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  170 (213)
T cd03235          91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED  170 (213)
T ss_pred             HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            11111000 0      00111223333221     2223334542            448999999999 8999999999


Q ss_pred             HHHHHHHhc-CCeeEEEEecCCCcccHHHhhhhhee
Q 025758          150 LRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       150 ll~~le~~~-~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+.+.+.. .+..+|++||+... ...+.+|+..+
T Consensus       171 l~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l  205 (213)
T cd03235         171 IYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLL  205 (213)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEE
Confidence            999998875 34567777777554 44666666544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=2.1e-11  Score=103.42  Aligned_cols=153  Identities=16%  Similarity=0.229  Sum_probs=98.8

Q ss_pred             CCCCCcccccccHHHHHHHH----HHhhc-------CC--CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758            7 YRPKTLDQVIVHQDIAQNLK----KLVTE-------QD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus         7 y~p~~~~~lig~~~~~~~l~----~~~~~-------~~--~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      -+|.+|+.++-...+++.+.    ..+.+       |+  -.++||+||||||||+++-++|+.|.-.-           
T Consensus       195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydI-----------  263 (457)
T KOG0743|consen  195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDI-----------  263 (457)
T ss_pred             CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCce-----------
Confidence            36789999987666555444    44332       22  12499999999999999999999762100           


Q ss_pred             eeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC-C---H-----
Q 025758           74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-S---R-----  144 (248)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-~---~-----  144 (248)
                                           ..+..  ..+..+..    ++.+...       ..+..||+|++||.- +   .     
T Consensus       264 ---------------------ydLeL--t~v~~n~d----Lr~LL~~-------t~~kSIivIEDIDcs~~l~~~~~~~~  309 (457)
T KOG0743|consen  264 ---------------------YDLEL--TEVKLDSD----LRHLLLA-------TPNKSILLIEDIDCSFDLRERRKKKK  309 (457)
T ss_pred             ---------------------EEeee--ccccCcHH----HHHHHHh-------CCCCcEEEEeeccccccccccccccc
Confidence                                 11111  11111112    3333322       225679999999864 1   0     


Q ss_pred             ---------HHHHHHHHHHHHhc----CCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHH
Q 025758          145 ---------EAQHSLRRTMEKYS----ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKK  204 (248)
Q Consensus       145 ---------~~~~~ll~~le~~~----~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~  204 (248)
                               -....||..++..-    ...++|+|||+.+.+.|+|..+.   .+|++..=+.+..+..+.+.+.-
T Consensus       310 ~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~  385 (457)
T KOG0743|consen  310 ENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI  385 (457)
T ss_pred             ccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence                     01234777777552    23579999999999999999954   58888888888888887776654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.35  E-value=5.9e-12  Score=99.57  Aligned_cols=149  Identities=15%  Similarity=0.162  Sum_probs=84.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~   92 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.....  +........        ...+..
T Consensus        17 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~tv~   91 (207)
T PRK13539         17 LFSGLSFTLAAGE--ALVLTGPNGSGKTTLLRLIAG-LLPPAAGTIKLDGGDIDD--PDVAEACHYLGHRNAMKPALTVA   91 (207)
T ss_pred             EEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEeCcc--hhhHhhcEEecCCCcCCCCCcHH
Confidence            3444444444443  367999999999999999998 667888999888864321  000000000        000111


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHH
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM  154 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~l  154 (248)
                      +++.+.....+. ....+.+.++.+     .......+|+            ..+|+++++||| ..+|+.....+.+.+
T Consensus        92 ~~l~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  170 (207)
T PRK13539         92 ENLEFWAAFLGG-EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI  170 (207)
T ss_pred             HHHHHHHHhcCC-cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            111110000000 011122232222     1222223332            447999999999 799999999999999


Q ss_pred             HHhc-CCeeEEEEecCCCcccH
Q 025758          155 EKYS-ASCRLILCCNSSSKVTE  175 (248)
Q Consensus       155 e~~~-~~~~~Il~t~~~~~~~~  175 (248)
                      .+.. ....+|++|++...+..
T Consensus       171 ~~~~~~~~tiii~sH~~~~~~~  192 (207)
T PRK13539        171 RAHLAQGGIVIAATHIPLGLPG  192 (207)
T ss_pred             HHHHHCCCEEEEEeCCchhhcc
Confidence            8763 34678888888776664

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=3.4e-12  Score=104.21  Aligned_cols=160  Identities=20%  Similarity=0.272  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee------eecc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT------TLSS   91 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~   91 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.+.......   +...+-.+      ..+.
T Consensus        17 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   93 (255)
T PRK11231         17 ILNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFAR-LLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITV   93 (255)
T ss_pred             EEeeeeeEEcCCc--EEEEECCCCCCHHHHHHHHhC-CcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccH
Confidence            4445554554443  367999999999999999998 6678889998888643210000   00000000      0011


Q ss_pred             cceeeeCCCC----cCc---chhHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           92 ANHVELSPSD----AGF---QDRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        92 ~~~~~~~~~~----~~~---~~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      .+++.+....    .+.   .....+.+.++.     .....+..+|+            ..+|+++++||| ..+|+..
T Consensus        94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~  173 (255)
T PRK11231         94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH  173 (255)
T ss_pred             HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            1111111000    000   001112222222     12223334442            458999999999 8999999


Q ss_pred             HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+.+.+.+... +..+|++|++.. ....+.+|+.++
T Consensus       174 ~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l  211 (255)
T PRK11231        174 QVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVL  211 (255)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEE
Confidence            9999999988654 456677766654 444677777443

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.35  E-value=4.7e-11  Score=102.73  Aligned_cols=166  Identities=19%  Similarity=0.272  Sum_probs=96.5

Q ss_pred             cccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecc
Q 025758           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (248)
Q Consensus        12 ~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (248)
                      ++++++.+...+.+...+..+  .+++|+||||||||++|+.+|..+.... ....+....+.   +..         +.
T Consensus       174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~-~~~~v~~VtFH---psy---------SY  238 (459)
T PRK11331        174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFH---QSY---------SY  238 (459)
T ss_pred             hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCc-ccceeeEEeec---ccc---------cH
Confidence            566777777777777777643  4699999999999999999998663321 11111111010   000         00


Q ss_pred             ccee-eeCCCCcCcch-hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH-HHHHHHHHHHh-----------
Q 025758           92 ANHV-ELSPSDAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QHSLRRTMEKY-----------  157 (248)
Q Consensus        92 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-~~~ll~~le~~-----------  157 (248)
                      .+++ ++.+...+... .....+.+..... .      ...+.++||||+++.+.+. ...++.++|..           
T Consensus       239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~-~------p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~  311 (459)
T PRK11331        239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKE-Q------PEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLT  311 (459)
T ss_pred             HHHhcccCCCCCCeEecCchHHHHHHHHHh-c------ccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeee
Confidence            0111 22222222111 1112233333222 1      1256799999999888654 56667777621           


Q ss_pred             -----------cCCeeEEEEecCCC----cccHHHhhhhheeeecC-CCHHHHHHHHH
Q 025758          158 -----------SASCRLILCCNSSS----KVTEAIRSRCLNIRINS-PTEEQIVKVLE  199 (248)
Q Consensus       158 -----------~~~~~~Il~t~~~~----~~~~~l~sR~~~i~~~~-~~~~~~~~il~  199 (248)
                                 +.+..+|.|.|..+    .+..++++|+..+.+.+ ++...+.+.+.
T Consensus       312 y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~  369 (459)
T PRK11331        312 YSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL  369 (459)
T ss_pred             ccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence                       23455788888776    57889999999988876 45555555543

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.35  E-value=1.3e-12  Score=104.72  Aligned_cols=161  Identities=14%  Similarity=0.250  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceee-------ecc
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTT-------LSS   91 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~   91 (248)
                      .+.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.+++.++....+.. .....+..       .+.
T Consensus        21 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv   97 (225)
T PRK10247         21 KILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVAS-LISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTV   97 (225)
T ss_pred             eeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccH
Confidence            34455555555443  367999999999999999998 66888999988886543111100 00000000       011


Q ss_pred             cceeeeCCCCcCcc-hhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           92 ANHVELSPSDAGFQ-DRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        92 ~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      .+++.+........ ....+.+.++.+      ....+..+|+            ..+|+++++||| ..||+.....+.
T Consensus        98 ~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  177 (225)
T PRK10247         98 YDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN  177 (225)
T ss_pred             HHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            11111100000000 111122333222      1122223332            458999999999 899999999999


Q ss_pred             HHHHHhcC--CeeEEEEecCCCcccHHHhhhhheee
Q 025758          152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       152 ~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      +++.+...  +..+|++|++...+ + ..+|+..+.
T Consensus       178 ~~l~~~~~~~~~tvii~sh~~~~~-~-~~d~i~~l~  211 (225)
T PRK10247        178 EIIHRYVREQNIAVLWVTHDKDEI-N-HADKVITLQ  211 (225)
T ss_pred             HHHHHHHHhcCCEEEEEECChHHH-H-hCCEEEEEe
Confidence            99998743  45788888887665 3 466665553

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.34  E-value=5.6e-12  Score=102.82  Aligned_cols=158  Identities=13%  Similarity=0.203  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee------ecccce
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSANH   94 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~   94 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.+...  ......+-.+.      .++.++
T Consensus        16 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~   90 (255)
T PRK11248         16 ALEDINLTLESGE--LLVVLGPSGCGKTTLLNLIAG-FVPYQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDN   90 (255)
T ss_pred             eEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHH
Confidence            4444555555543  367999999999999999998 668889999988865431  10000000000      011111


Q ss_pred             eeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758           95 VELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT  153 (248)
Q Consensus        95 ~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~  153 (248)
                      +.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++|+||| ..||+.....+.++
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~  170 (255)
T PRK11248         91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL  170 (255)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            111000001111   11122333222     1222334442            458999999999 89999999999999


Q ss_pred             HHHhc--CCeeEEEEecCCCcccHHHhhhhhee
Q 025758          154 MEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       154 le~~~--~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      |.+..  .+..+|++||+.. ....+.+|...+
T Consensus       171 L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l  202 (255)
T PRK11248        171 LLKLWQETGKQVLLITHDIE-EAVFMATELVLL  202 (255)
T ss_pred             HHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            98863  2456777777765 344666666544

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.34  E-value=7e-12  Score=98.43  Aligned_cols=147  Identities=14%  Similarity=0.191  Sum_probs=83.1

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee----------cc
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL----------SS   91 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~   91 (248)
                      .+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.+++.+..........  .....          +.
T Consensus        16 l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~--~i~~~~q~~~~~~~~tv   90 (198)
T TIGR01189        16 FEGLSFTLNAGE--ALQVTGPNGIGKTTLLRILAG-LLRPDSGEVRWNGTALAEQRDEPHR--NILYLGHLPGLKPELSA   90 (198)
T ss_pred             EeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCccEEEECCEEcccchHHhhh--heEEeccCcccccCCcH
Confidence            344444444442  477999999999999999999 6678889998888654311110000  00000          00


Q ss_pred             cceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758           92 ANHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT  153 (248)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~  153 (248)
                      .+.+.+...... .....+.+.++.+     ....+..+|+            ..+|+++++||| ..||......+.+.
T Consensus        91 ~~~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  169 (198)
T TIGR01189        91 LENLHFWAAIHG-GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGL  169 (198)
T ss_pred             HHHHHHHHHHcC-CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence            000100000000 0001122222211     1122223332            458999999999 89999999999999


Q ss_pred             HHHhc-CCeeEEEEecCCCccc
Q 025758          154 MEKYS-ASCRLILCCNSSSKVT  174 (248)
Q Consensus       154 le~~~-~~~~~Il~t~~~~~~~  174 (248)
                      +.+.. .+..+|++||++..+.
T Consensus       170 l~~~~~~~~tii~~sH~~~~~~  191 (198)
T TIGR01189       170 LRAHLARGGIVLLTTHQDLGLV  191 (198)
T ss_pred             HHHHHhCCCEEEEEEccccccc
Confidence            98763 3457888888875443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.34  E-value=2.3e-12  Score=106.42  Aligned_cols=159  Identities=16%  Similarity=0.246  Sum_probs=94.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--e-------eec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--T-------TLS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-------~~~   90 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++....... .....+  +       ..+
T Consensus        22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t   98 (279)
T PRK13650         22 TLNDVSFHVKQGE--WLSIIGHNGSGKSTTVRLIDG-LLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT   98 (279)
T ss_pred             eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence            4444545555543  366999999999999999998 67889999999887653111100 000000  0       011


Q ss_pred             ccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           91 SANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      +.+++.+.....+....   ..+.+.++.     .....+..+|+            ..+|+++++||| ..||+.....
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~  178 (279)
T PRK13650         99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE  178 (279)
T ss_pred             HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence            12222221111111111   112222222     22233344552            458999999999 8999999999


Q ss_pred             HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+++.+...  +..+|++||+...+ . +.+|+.++
T Consensus       179 l~~~l~~l~~~~g~tilivtH~~~~~-~-~~dri~~l  213 (279)
T PRK13650        179 LIKTIKGIRDDYQMTVISITHDLDEV-A-LSDRVLVM  213 (279)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence            9999988754  46788888887765 3 57777544

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.34  E-value=2.5e-11  Score=103.31  Aligned_cols=108  Identities=21%  Similarity=0.317  Sum_probs=76.9

Q ss_pred             CeeEEEEeCCCCCC------------HHHHHHHHHHHHHhcCC----------eeEEEEe----cCCCcccHHHhhhh-h
Q 025758          130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYSAS----------CRLILCC----NSSSKVTEAIRSRC-L  182 (248)
Q Consensus       130 ~~~viiiDE~d~l~------------~~~~~~ll~~le~~~~~----------~~~Il~t----~~~~~~~~~l~sR~-~  182 (248)
                      +..|++|||+|.+.            ...|.+||+++|...-+          ..||+..    ..+.++.|.|..|+ .
T Consensus       249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi  328 (443)
T PRK05201        249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI  328 (443)
T ss_pred             cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence            66799999999874            23688999999964221          2233331    24567899999999 6


Q ss_pred             eeeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHcc--------ccHHHHHHHHHHHhh
Q 025758          183 NIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKSN--------RSLRRAILSFETCRV  237 (248)
Q Consensus       183 ~i~~~~~~~~~~~~il~~----~-------~~~~~~--~~~~~~~~~l~~~~~--------g~~r~~~~~l~~~~~  237 (248)
                      ++.+.+++.+++..||..    .       +..+|+  .++++++..|++.+-        --+|.+-.+++....
T Consensus       329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~  404 (443)
T PRK05201        329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE  404 (443)
T ss_pred             EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence            899999999999999943    2       333455  477999999986652        236666666666553

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.34  E-value=1e-11  Score=100.68  Aligned_cols=169  Identities=14%  Similarity=0.170  Sum_probs=94.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.+++..+.+.......   ....++.+.+......... ......+.++.
T Consensus        28 ~~i~G~NGsGKSTLlk~L~G-~~~p~~G~i~~~g~~i~~~~q~~~~---~~~~tv~e~l~~~~~~~~~-~~~~~~~~l~~  102 (246)
T cd03237          28 IGILGPNGIGKTTFIKMLAG-VLKPDEGDIEIELDTVSYKPQYIKA---DYEGTVRDLLSSITKDFYT-HPYFKTEIAKP  102 (246)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCcCCCCeEEECCceEEEecccccC---CCCCCHHHHHHHHhhhccc-cHHHHHHHHHH
Confidence            78999999999999999998 6688889888877533321111100   0000111111110000000 00011222221


Q ss_pred             -----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHH
Q 025758          117 -----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEA  176 (248)
Q Consensus       117 -----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~  176 (248)
                           ........+|+            ..+++++++||| ..||+.....+.++|.+...  +..+|++||+.. ....
T Consensus       103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~  181 (246)
T cd03237         103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDY  181 (246)
T ss_pred             cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence                 11222233442            458899999999 89999999999999988743  456777777654 4456


Q ss_pred             Hhhhhheeee------cCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          177 IRSRCLNIRI------NSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       177 l~sR~~~i~~------~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                      +.+|+.++.=      ..-....+..-+...+..+++.+..
T Consensus       182 ~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  222 (246)
T cd03237         182 LADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFRR  222 (246)
T ss_pred             hCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCCEEec
Confidence            7777644311      1112333445555555666665443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.34  E-value=3.3e-12  Score=108.78  Aligned_cols=140  Identities=14%  Similarity=0.213  Sum_probs=85.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh--------
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------  107 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  107 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.+++..+........    .  ......+++.+.+....+.        
T Consensus        26 ~~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~~~~~~~~~~----~--~~~~~~i~~v~q~~~l~~~~tv~enl~   98 (352)
T PRK11144         26 ITAIFGRSGAGKTSLINAISG-LTRPQKGRIVLNGRVLFDAEKGIC----L--PPEKRRIGYVFQDARLFPHYKVRGNLR   98 (352)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccccccc----c--chhhCCEEEEcCCcccCCCCcHHHHHH
Confidence            477999999999999999998 678889999998876531000000    0  0000112222222111111        


Q ss_pred             --------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--
Q 025758          108 --------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--  159 (248)
Q Consensus       108 --------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--  159 (248)
                              ..+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....+.+.|.+...  
T Consensus        99 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~  178 (352)
T PRK11144         99 YGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI  178 (352)
T ss_pred             hhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence                    1122222221     1223334442            448999999999 89999999999999987744  


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhe
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +..+|++||+...+ ..+.+|+.+
T Consensus       179 g~tii~vTHd~~~~-~~~~d~i~~  201 (352)
T PRK11144        179 NIPILYVSHSLDEI-LRLADRVVV  201 (352)
T ss_pred             CCeEEEEecCHHHH-HHhCCEEEE
Confidence            35688888876544 466677643

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.34  E-value=3.3e-12  Score=98.20  Aligned_cols=158  Identities=15%  Similarity=0.210  Sum_probs=98.8

Q ss_pred             CcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-----cccceecccceeecc---CCccc
Q 025758           11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-----AEKVKVENKTWKIDA---GSRNI   82 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-----~~~~~~~~~~~~~~~---~~~~~   82 (248)
                      ++.=.+|..++++.+..-++.+.+..  |.||+||||||++|++-+ ++...     .|.+.++|+++....   -.-++
T Consensus        12 ~l~~yYg~~~aL~~i~l~i~~~~VTA--lIGPSGcGKST~LR~lNR-mndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr   88 (253)
T COG1117          12 DLNLYYGDKHALKDINLDIPKNKVTA--LIGPSGCGKSTLLRCLNR-MNDLIPGARVEGEVLLDGKNIYDPKVDVVELRR   88 (253)
T ss_pred             ceeEEECchhhhccCceeccCCceEE--EECCCCcCHHHHHHHHHh-hcccCcCceEEEEEEECCeeccCCCCCHHHHHH
Confidence            44445888999999988888888777  999999999999999997 54433     366666666543110   00001


Q ss_pred             ccceee-------ecccceeeeCCCCcCcch---hHHHHHH---------HHHHHhcCCCcCCC------------CCCe
Q 025758           83 DLELTT-------LSSANHVELSPSDAGFQD---RYVVQEV---------IKEMAKNRPIDTKG------------KRGF  131 (248)
Q Consensus        83 ~~~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~------------~~~~  131 (248)
                      .....+       .+..+++.|.+.-.+...   .+.++..         .+........++|+            .-.|
T Consensus        89 ~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~P  168 (253)
T COG1117          89 RVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKP  168 (253)
T ss_pred             HheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCC
Confidence            011111       122223333332222222   0111111         12222334445664            2379


Q ss_pred             eEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758          132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (248)
Q Consensus       132 ~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~  171 (248)
                      .||++||| ..|||-+-..+-++|.+..++.++|+.||+..
T Consensus       169 eVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmq  209 (253)
T COG1117         169 EVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ  209 (253)
T ss_pred             cEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHH
Confidence            99999999 89999999999999999988888888888864

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.34  E-value=4e-12  Score=101.92  Aligned_cols=162  Identities=18%  Similarity=0.190  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC---CCcccceecccceeeccCCcccccce------eeecc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG---PGAEKVKVENKTWKIDAGSRNIDLEL------TTLSS   91 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~   91 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..   +.+|.+.++|.++..........+-.      ...++
T Consensus        22 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G-~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv   98 (226)
T cd03234          22 ILNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISG-RVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV   98 (226)
T ss_pred             cccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhC-ccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence            4444544555443  367999999999999999999 445   78888888886542100000000000      00011


Q ss_pred             cceeeeCCCCc---C-cch--hHHHHH-HHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           92 ANHVELSPSDA---G-FQD--RYVVQE-VIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        92 ~~~~~~~~~~~---~-~~~--~~~~~~-~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      .+++.+.....   . ...  .....+ .++.+.     ......+|+            ..+|+++++||| ..+|+..
T Consensus        99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~  178 (226)
T cd03234          99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT  178 (226)
T ss_pred             HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHH
Confidence            11111100000   0 000  000111 222211     112223332            448999999999 7999999


Q ss_pred             HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhheee
Q 025758          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      +..+.+.+.+... ...+|++|++.......+.+|+.++.
T Consensus       179 ~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~  218 (226)
T cd03234         179 ALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS  218 (226)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe
Confidence            9999999988643 45677777876555556777775543

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.34  E-value=4.4e-12  Score=102.73  Aligned_cols=160  Identities=14%  Similarity=0.291  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--e------eecc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--T------TLSS   91 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~------~~~~   91 (248)
                      +++.+...+.+|.  .+.+.||||+||||+++++++ +..+..|.+.++|.++....... .....+  +      ..+.
T Consensus        16 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (242)
T cd03295          16 AVNNLNLEIAKGE--FLVLIGPSGSGKTTTMKMINR-LIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV   92 (242)
T ss_pred             EeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence            3444444555543  366999999999999999998 66788899998886543111100 000000  0      0011


Q ss_pred             cceeeeCCCCcCcch---hHHHHHHHHHHH-------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758           92 ANHVELSPSDAGFQD---RYVVQEVIKEMA-------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (248)
Q Consensus        92 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (248)
                      .+++.+.....+...   ...+.+.++.+.       ...+..+|+            ..+|+++++||| ..+|+....
T Consensus        93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  172 (242)
T cd03295          93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD  172 (242)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence            111111000000000   111223333221       111223332            458999999999 899999999


Q ss_pred             HHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       149 ~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+.+.+.+...  +..+|++||+... ...+.+|+..+
T Consensus       173 ~l~~~L~~~~~~~g~tvii~sH~~~~-~~~~~d~i~~l  209 (242)
T cd03295         173 QLQEEFKRLQQELGKTIVFVTHDIDE-AFRLADRIAIM  209 (242)
T ss_pred             HHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence            99999988743  4567777777653 35666776444

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.34  E-value=2.3e-12  Score=106.45  Aligned_cols=159  Identities=15%  Similarity=0.242  Sum_probs=94.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee-------eec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT-------TLS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~   90 (248)
                      +++.+...+..|..  +.|.||||+|||||++++++ +..+.+|.+.++|+.+......   ....+-.+       ..+
T Consensus        22 ~l~~vsl~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t   98 (279)
T PRK13635         22 ALKDVSFSVYEGEW--VAIVGHNGSGKSTLAKLLNG-LLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT   98 (279)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence            55555555665543  66999999999999999998 6788999999999765421110   00000000       001


Q ss_pred             ccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           91 SANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      +.+++.+.....+....   ..+.+.+..     .....+..+|+            ..+|+++++||| ..||+..+..
T Consensus        99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~  178 (279)
T PRK13635         99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE  178 (279)
T ss_pred             HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            11112111111111111   112222221     12223334442            458999999999 8999999999


Q ss_pred             HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+++.+...  +..+|++|++.+.+ +. .+|+.++
T Consensus       179 l~~~l~~l~~~~~~tilivsH~~~~~-~~-~d~i~~l  213 (279)
T PRK13635        179 VLETVRQLKEQKGITVLSITHDLDEA-AQ-ADRVIVM  213 (279)
T ss_pred             HHHHHHHHHHcCCCEEEEEecCHHHH-Hc-CCEEEEE
Confidence            9999988754  46788888887765 33 6776443

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.34  E-value=3.6e-11  Score=101.68  Aligned_cols=153  Identities=23%  Similarity=0.336  Sum_probs=88.2

Q ss_pred             ccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758           15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH   94 (248)
Q Consensus        15 lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (248)
                      ++|.++++..+..++..+  .|++|.||||+|||++|+.+|..+..+-   .++.+.                       
T Consensus        26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~~~---~~i~~t-----------------------   77 (329)
T COG0714          26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGLPF---VRIQCT-----------------------   77 (329)
T ss_pred             eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCCCe---EEEecC-----------------------
Confidence            567777777665555444  3689999999999999999999763111   111110                       


Q ss_pred             eeeCCCCcCcchhHHHHHHH--HHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc----------C-Ce
Q 025758           95 VELSPSDAGFQDRYVVQEVI--KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------A-SC  161 (248)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----------~-~~  161 (248)
                      ..+.+++.-  .........  .......+..+..... .++++||+++.++..++.|+..+++..          . ..
T Consensus        78 ~~l~p~d~~--G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~  154 (329)
T COG0714          78 PDLLPSDLL--GTYAYAALLLEPGEFRFVPGPLFAAVR-VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPP  154 (329)
T ss_pred             CCCCHHHhc--CchhHhhhhccCCeEEEecCCcccccc-eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCC
Confidence            111111110  000001000  0001111111111111 599999999999999999999998731          1 12


Q ss_pred             eEEEEecCC------CcccHHHhhhh-heeeecCCCHHHHHHHH
Q 025758          162 RLILCCNSS------SKVTEAIRSRC-LNIRINSPTEEQIVKVL  198 (248)
Q Consensus       162 ~~Il~t~~~------~~~~~~l~sR~-~~i~~~~~~~~~~~~il  198 (248)
                      .+++.|+++      ..+++++.+|| ..+.+++|..++...++
T Consensus       155 f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i  198 (329)
T COG0714         155 FIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII  198 (329)
T ss_pred             CEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence            244444333      46899999999 88888888554433333

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.33  E-value=6.4e-12  Score=101.75  Aligned_cols=160  Identities=14%  Similarity=0.188  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--cccccce--ee------ec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--RNIDLEL--TT------LS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~------~~   90 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.++......  ......+  +.      .+
T Consensus        17 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   93 (242)
T TIGR03411        17 ALNDLSLYVDPGE--LRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT   93 (242)
T ss_pred             EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence            3444444455443  367999999999999999998 6678899999988654311100  0000000  00      01


Q ss_pred             ccceeeeCCC-CcC-------cc---hhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758           91 SANHVELSPS-DAG-------FQ---DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DK  141 (248)
Q Consensus        91 ~~~~~~~~~~-~~~-------~~---~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~  141 (248)
                      +.+++.+... ...       ..   ....+.+.++.+.     ......+|+            ..+|+++++||| ..
T Consensus        94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~  173 (242)
T TIGR03411        94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG  173 (242)
T ss_pred             HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence            1111111000 000       00   1111223333211     111223332            458999999999 89


Q ss_pred             CCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          142 LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       142 l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ||+..+..+.+++.+...+..+|++||+.+ ..+.+.+|+..+
T Consensus       174 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~l  215 (242)
T TIGR03411       174 MTDEETEKTAELLKSLAGKHSVVVVEHDME-FVRSIADKVTVL  215 (242)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence            999999999999998866566777777655 455677777544

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.33  E-value=5.8e-12  Score=107.11  Aligned_cols=158  Identities=13%  Similarity=0.240  Sum_probs=93.0

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccce
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSANH   94 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~   94 (248)
                      ++.+...+.+|.  .+.|.||+|+|||||+++|++ +..+.+|.+.++|..+....+... ..+-++      ..++.++
T Consensus        18 l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~en   94 (353)
T PRK10851         18 LNDISLDIPSGQ--MVALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDN   94 (353)
T ss_pred             EEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHH
Confidence            334444444443  467999999999999999999 778899999999876542111111 101011      0111122


Q ss_pred             eeeCCCC----cCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           95 VELSPSD----AGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        95 ~~~~~~~----~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      +.+....    .+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||...+..
T Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~  174 (353)
T PRK10851         95 IAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE  174 (353)
T ss_pred             HHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence            2221110    01111   11223333322     2223334552            458999999999 8999999999


Q ss_pred             HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +.+.+.+..+  +..+|++||+..... .+.+|+.+
T Consensus       175 l~~~L~~l~~~~g~tii~vTHd~~ea~-~~~Dri~v  209 (353)
T PRK10851        175 LRRWLRQLHEELKFTSVFVTHDQEEAM-EVADRVVV  209 (353)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEE
Confidence            9999988754  356777777765444 56677643

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.33  E-value=1.5e-12  Score=104.42  Aligned_cols=159  Identities=16%  Similarity=0.219  Sum_probs=90.9

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc-----CCCcccceecccceeeccC---Ccccccce--e---
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-----GPGAEKVKVENKTWKIDAG---SRNIDLEL--T---   87 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~---   87 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +.     .+.+|.+.++|.++.....   .......+  +   
T Consensus        15 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~   91 (227)
T cd03260          15 ALKDISLDIPKGE--ITALIGPSGCGKSTLLRLLNR-LNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN   91 (227)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHh-hcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence            4444444455443  366999999999999999999 55     7788999988865431110   00000000  0   


Q ss_pred             --eecccceeeeCCCCcCcch----hHHHHHHHHHH-----HhcC--CCcCCC------------CCCeeEEEEeCC-CC
Q 025758           88 --TLSSANHVELSPSDAGFQD----RYVVQEVIKEM-----AKNR--PIDTKG------------KRGFKVLVLNEV-DK  141 (248)
Q Consensus        88 --~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----~~~~--~~~~~~------------~~~~~viiiDE~-d~  141 (248)
                        ..++.+++.+.....+...    ...+.+.++.+     ....  +..+|+            ..+|+++++||| ..
T Consensus        92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  171 (227)
T cd03260          92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA  171 (227)
T ss_pred             hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence              0111111111110001000    11223333322     1112  244553            448999999999 89


Q ss_pred             CCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758          142 LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       142 l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ||+.....+.+++.+......+|++||+.. ....+.+|+..
T Consensus       172 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~  212 (227)
T cd03260         172 LDPISTAKIEELIAELKKEYTIVIVTHNMQ-QAARVADRTAF  212 (227)
T ss_pred             CCHHHHHHHHHHHHHHhhCcEEEEEeccHH-HHHHhCCEEEE
Confidence            999999999999998765566777777755 44466677643

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.33  E-value=2.8e-12  Score=108.06  Aligned_cols=143  Identities=15%  Similarity=0.269  Sum_probs=83.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-ccccee------eecccceeeeCCCCcCcch---hH
Q 025758           39 FYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELT------TLSSANHVELSPSDAGFQD---RY  108 (248)
Q Consensus        39 l~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~---~~  108 (248)
                      |.||||+||||+++++++ +..+.+|.+.++|.++....+... ..+-.+      ..++.+++.+.....+...   ..
T Consensus         1 l~G~nGsGKSTLl~~iaG-l~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAG-FEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence            579999999999999998 778899999998876531111110 000000      0011111111100001110   11


Q ss_pred             HHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEec
Q 025758          109 VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCN  168 (248)
Q Consensus       109 ~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~  168 (248)
                      .+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....+.+.+.+...  +..+|++||
T Consensus        80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH  159 (325)
T TIGR01187        80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH  159 (325)
T ss_pred             HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            122233322     1222334442            458999999999 89999999999999987643  457788888


Q ss_pred             CCCcccHHHhhhhhe
Q 025758          169 SSSKVTEAIRSRCLN  183 (248)
Q Consensus       169 ~~~~~~~~l~sR~~~  183 (248)
                      +... ...+.+|+.+
T Consensus       160 d~~e-~~~~~d~i~v  173 (325)
T TIGR01187       160 DQEE-AMTMSDRIAI  173 (325)
T ss_pred             CHHH-HHHhCCEEEE
Confidence            7654 3466777743

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.33  E-value=5e-12  Score=106.89  Aligned_cols=158  Identities=18%  Similarity=0.203  Sum_probs=93.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT--------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------   88 (248)
                      +++.+...+.+|..  +.+.||||+|||||++++++ +..+++|.+.++|.++....+..    .....+..        
T Consensus        20 ~L~~vsl~i~~Gei--~gIiG~sGaGKSTLlr~I~g-l~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~   96 (343)
T TIGR02314        20 ALNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNL-LERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS   96 (343)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence            44555555655543  56999999999999999998 77899999999997654211100    00011000        


Q ss_pred             ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      .++.+++.+.....+...   ...+.+.++.+     ...++..+|+            ..+|+++++||| ..||+...
T Consensus        97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~  176 (343)
T TIGR02314        97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT  176 (343)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence            011111111100001110   11122333222     2233445553            458999999999 89999999


Q ss_pred             HHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       148 ~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      ..+++++.+...  +..+|++||+. .....+++|+.
T Consensus       177 ~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~  212 (343)
T TIGR02314       177 QSILELLKEINRRLGLTILLITHEM-DVVKRICDCVA  212 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence            999999998754  45677777765 44457777774

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=9.4e-12  Score=93.84  Aligned_cols=129  Identities=19%  Similarity=0.200  Sum_probs=87.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (248)
                      .+.+.||||+||||+.|++|+ +..+.+|.+...+.+....-.           +..++.-|.....+.+...++.|.+.
T Consensus        30 ~~~i~G~NG~GKTtLLRilaG-Ll~p~~G~v~~~~~~i~~~~~-----------~~~~~l~yLGH~~giK~eLTa~ENL~   97 (209)
T COG4133          30 ALQITGPNGAGKTTLLRILAG-LLRPDAGEVYWQGEPIQNVRE-----------SYHQALLYLGHQPGIKTELTALENLH   97 (209)
T ss_pred             EEEEECCCCCcHHHHHHHHHc-ccCCCCCeEEecCCCCccchh-----------hHHHHHHHhhccccccchhhHHHHHH
Confidence            377999999999999999999 889999999888765441110           00122344455555566666666655


Q ss_pred             HHHhcCCC------------------------cCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758          116 EMAKNRPI------------------------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus       116 ~~~~~~~~------------------------~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~  158 (248)
                      ........                        .+|.            ....++-|+||| ..+|++....|-.++....
T Consensus        98 F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~  177 (209)
T COG4133          98 FWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA  177 (209)
T ss_pred             HHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh
Confidence            44432221                        1221            446779999999 7999999999999998764


Q ss_pred             C-CeeEEEEecCCCcccHH
Q 025758          159 A-SCRLILCCNSSSKVTEA  176 (248)
Q Consensus       159 ~-~~~~Il~t~~~~~~~~~  176 (248)
                      . .+.+|++|+.+..+.++
T Consensus       178 ~~GGiVllttHq~l~~~~a  196 (209)
T COG4133         178 AQGGIVLLTTHQPLPIASA  196 (209)
T ss_pred             cCCCEEEEecCCccCCCcc
Confidence            4 45677777776655443

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.33  E-value=7.2e-12  Score=100.68  Aligned_cols=145  Identities=19%  Similarity=0.259  Sum_probs=84.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee------eecccceeeeCCC--CcCcch-
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT------TLSSANHVELSPS--DAGFQD-  106 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~-  106 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.  ..+-.+      ..++.+++.+...  ...... 
T Consensus        13 ~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~--~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~   89 (230)
T TIGR01184        13 FISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQITEPGPD--RMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKS   89 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChh--heEEecCcccCCCCCHHHHHHHHHHhcccCCCHH
Confidence            377999999999999999998 6688899999988654311110  000000      0111111111000  001110 


Q ss_pred             --hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEE
Q 025758          107 --RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLI  164 (248)
Q Consensus       107 --~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~I  164 (248)
                        ...+.+.++.+     ....+..+|+            ..+|+++|+||| ..+|+.....+.+.+.+..+  +..+|
T Consensus        90 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii  169 (230)
T TIGR01184        90 ERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL  169 (230)
T ss_pred             HHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence              01122223221     1223334442            458999999999 79999999999999987643  45677


Q ss_pred             EEecCCCcccHHHhhhhhee
Q 025758          165 LCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       165 l~t~~~~~~~~~l~sR~~~i  184 (248)
                      ++||+... ...+.+|+.++
T Consensus       170 ~~sH~~~~-~~~~~d~v~~l  188 (230)
T TIGR01184       170 MVTHDVDE-ALLLSDRVVML  188 (230)
T ss_pred             EEeCCHHH-HHHhcCEEEEE
Confidence            77777553 44666776444

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.33  E-value=1.6e-12  Score=105.81  Aligned_cols=162  Identities=15%  Similarity=0.239  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC---------Ccccccceee--
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---------SRNIDLELTT--   88 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--   88 (248)
                      .+.+.+...+..|.  .+.|.||||+||||+++++++ +..+..|.+.+++..+.....         .......+..  
T Consensus        17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~   93 (250)
T PRK11264         17 TVLHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINL-LEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN   93 (250)
T ss_pred             eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence            35555555555553  366999999999999999998 667888999888865531110         0000000000  


Q ss_pred             ------ecccceeeeCCC-CcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           89 ------LSSANHVELSPS-DAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        89 ------~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                            .+..+++.+... ..+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| .
T Consensus        94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~  173 (250)
T PRK11264         94 FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTS  173 (250)
T ss_pred             cccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence                  000011100000 000000   01122222221     1112223442            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhheee
Q 025758          141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      .+|+.....+.+++++... +..+|++||+.. ....+.+|+.++.
T Consensus       174 ~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~  218 (250)
T PRK11264        174 ALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMD  218 (250)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence            9999999999999988754 456777777654 4556777775543

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.33  E-value=1.7e-12  Score=100.43  Aligned_cols=148  Identities=14%  Similarity=0.214  Sum_probs=85.7

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc---ccccceeeecccceeeeC
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTTLSSANHVELS   98 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   98 (248)
                      .+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.+++.++....+..   ...+..+..   ..+++.
T Consensus        15 l~~~~~~i~~G~--~~~l~G~nGsGKStLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l---~~~gl~   88 (180)
T cd03214          15 LDDLSLSIEAGE--IVGILGPNGAGKSTLLKTLAG-LLKPSSGEILLDGKDLASLSPKELARKIAYVPQAL---ELLGLA   88 (180)
T ss_pred             EeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHH---HHcCCH
Confidence            334444444443  367999999999999999998 66888899988886543111100   000000000   000100


Q ss_pred             ----CCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCC
Q 025758           99 ----PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSS  171 (248)
Q Consensus        99 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~  171 (248)
                          ......+..+..+-.+....         ..+|+++++||| ..||+.....+.+++.+...  +..+|++|++..
T Consensus        89 ~~~~~~~~~LS~G~~qrl~laral---------~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~  159 (180)
T cd03214          89 HLADRPFNELSGGERQRVLLARAL---------AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN  159 (180)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHH---------hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                00111222222111111111         237789999999 79999999999999988754  456777777755


Q ss_pred             cccHHHhhhhheee
Q 025758          172 KVTEAIRSRCLNIR  185 (248)
Q Consensus       172 ~~~~~l~sR~~~i~  185 (248)
                      . ...+.+|+..+.
T Consensus       160 ~-~~~~~d~~~~l~  172 (180)
T cd03214         160 L-AARYADRVILLK  172 (180)
T ss_pred             H-HHHhCCEEEEEE
Confidence            4 335667765543

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.33  E-value=1.3e-12  Score=103.12  Aligned_cols=156  Identities=15%  Similarity=0.181  Sum_probs=86.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-----cccccceee-------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDLELTT-------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------   88 (248)
                      +.+.+...+..|.  .+.|.||||+||||+++++++ +..+..|.+.+++.++......     ......+..       
T Consensus        13 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   89 (206)
T TIGR03608        13 ILDDLNLTIEKGK--MYAIIGESGSGKSTLLNIIGL-LEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE   89 (206)
T ss_pred             EEeceEEEEeCCc--EEEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence            3444444454443  367999999999999999998 6688889998888753210000     000000000       


Q ss_pred             -ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           89 -LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        89 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                       .+..+++.+.....+...   ...+.+.++.+     .......+|+            ..+|+++++||| ..||+..
T Consensus        90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~  169 (206)
T TIGR03608        90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN  169 (206)
T ss_pred             CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence             001111111000000000   11122222221     1112223332            458999999999 8999999


Q ss_pred             HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhh
Q 025758          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ...+.+++.+... +..+|++||+.. +. .+.+|+
T Consensus       170 ~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~i  203 (206)
T TIGR03608       170 RDEVLDLLLELNDEGKTIIIVTHDPE-VA-KQADRV  203 (206)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEE
Confidence            9999999988643 456778888765 33 344443

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=1e-12  Score=106.07  Aligned_cols=161  Identities=12%  Similarity=0.132  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--ccccceee--------e
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLELTT--------L   89 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~   89 (248)
                      .+++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++.......  .....+..        .
T Consensus        19 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   95 (237)
T PRK11614         19 QALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCG-DPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM   95 (237)
T ss_pred             eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcC-CCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence            34555555555554  366999999999999999998 66888999998887543111000  00000000        0


Q ss_pred             cccceeeeCCCCcCcc-hhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           90 SSANHVELSPSDAGFQ-DRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      ++.+++.+........ ....+.+.++.+      ....+..+|+            ..+|+++++||| ..+|+.....
T Consensus        96 tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~  175 (237)
T PRK11614         96 TVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ  175 (237)
T ss_pred             cHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHH
Confidence            1111111100000000 011122222222      1223334442            448999999999 8999999999


Q ss_pred             HHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       150 ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+++.+... +..+|++|++... ...+.+|+..+
T Consensus       176 l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l  210 (237)
T PRK11614        176 IFDTIEQLREQGMTIFLVEQNANQ-ALKLADRGYVL  210 (237)
T ss_pred             HHHHHHHHHHCCCEEEEEeCcHHH-HHhhCCEEEEE
Confidence            9999988744 4567777766543 34667777444

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=2.4e-12  Score=104.74  Aligned_cols=162  Identities=14%  Similarity=0.153  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeeccCCc-cccccee------
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDAGSR-NIDLELT------   87 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~------   87 (248)
                      .+.+.+...+.+|.  .+.+.||||+||||+++++++. ..     +..|.+.++|.+........ .....+.      
T Consensus        17 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~   93 (250)
T PRK14247         17 EVLDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRL-IELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNP   93 (250)
T ss_pred             eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhcc-CCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCcc
Confidence            34555555555553  3679999999999999999994 44     35888888886543110000 0000000      


Q ss_pred             --eecccceeeeCCCCcCc--ch---hHHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC
Q 025758           88 --TLSSANHVELSPSDAGF--QD---RYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV  139 (248)
Q Consensus        88 --~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~  139 (248)
                        ..++.+++.+.......  ..   ...+.+.++.+.         ...+..+|+            ..+|+++++|||
T Consensus        94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP  173 (250)
T PRK14247         94 IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP  173 (250)
T ss_pred             CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence              00111111110000000  00   111222233221         112223432            458999999999


Q ss_pred             -CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758          140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       140 -d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                       ..||+.....+.+.+.+...+..+|++|++.. ....+.+|+..+.
T Consensus       174 ~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~  219 (250)
T PRK14247        174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQ-QAARISDYVAFLY  219 (250)
T ss_pred             CccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence             89999999999999998755566777777655 4446667775543

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.33  E-value=1.5e-12  Score=103.47  Aligned_cols=154  Identities=19%  Similarity=0.175  Sum_probs=88.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcc--------hhH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ--------DRY  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  108 (248)
                      +.|.||||+||||+++++.+ +.-+.+|+++++|.....+....-+..........+.++-.+......        +..
T Consensus        53 vgflGaNGAGKSTtLKmLTG-ll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~  131 (325)
T COG4586          53 VGFLGANGAGKSTTLKMLTG-LLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDD  131 (325)
T ss_pred             EEEEcCCCCcchhhHHHHhC-ccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHH
Confidence            77999999999999999999 778999999999974321110000000000000111111111100000        000


Q ss_pred             HHHHHHHHHHhc---------CCCcCC-C-----------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEE
Q 025758          109 VVQEVIKEMAKN---------RPIDTK-G-----------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLI  164 (248)
Q Consensus       109 ~~~~~~~~~~~~---------~~~~~~-~-----------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~I  164 (248)
                      ...+-++.+.+.         .-..+| +           ...|+|++|||| =.||..++..++..+.++..  +++++
T Consensus       132 ~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVl  211 (325)
T COG4586         132 EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL  211 (325)
T ss_pred             HHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEE
Confidence            111111111111         111122 1           458999999999 58999999999999987743  46777


Q ss_pred             EEecCCCcccHHHhhhhheeeecCCCHH
Q 025758          165 LCCNSSSKVTEAIRSRCLNIRINSPTEE  192 (248)
Q Consensus       165 l~t~~~~~~~~~l~sR~~~i~~~~~~~~  192 (248)
                      ++||+...+. +++.|+..|+-...-.+
T Consensus       212 lTTH~~~di~-~lc~rv~~I~~Gqlv~d  238 (325)
T COG4586         212 LTTHIFDDIA-TLCDRVLLIDQGQLVFD  238 (325)
T ss_pred             EEecchhhHH-HhhhheEEeeCCcEeec
Confidence            7777766654 89999877766655443

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.33  E-value=6.3e-12  Score=99.19  Aligned_cols=149  Identities=15%  Similarity=0.196  Sum_probs=84.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee----------c
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL----------S   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~   90 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++.........  .....          +
T Consensus        16 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~p~~G~v~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~t   90 (204)
T PRK13538         16 LFSGLSFTLNAGE--LVQIEGPNGAGKTSLLRILAG-LARPDAGEVLWQGEPIRRQRDEYHQ--DLLYLGHQPGIKTELT   90 (204)
T ss_pred             EEecceEEECCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEcccchHHhhh--heEEeCCccccCcCCc
Confidence            4445555555543  467999999999999999998 6688899998888654311100000  00000          1


Q ss_pred             ccceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758           91 SANHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~  152 (248)
                      ..+++.+.....+......+.+.++.+     .......+|+            ..+|+++++||| ..+|+.....+.+
T Consensus        91 v~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~  170 (204)
T PRK13538         91 ALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA  170 (204)
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence            111111100000000111122222211     1222223332            458999999999 7999999999999


Q ss_pred             HHHHhcC-CeeEEEEecCCCccc
Q 025758          153 TMEKYSA-SCRLILCCNSSSKVT  174 (248)
Q Consensus       153 ~le~~~~-~~~~Il~t~~~~~~~  174 (248)
                      ++.+... ...+|++|++...+.
T Consensus       171 ~l~~~~~~~~tiii~sh~~~~i~  193 (204)
T PRK13538        171 LLAQHAEQGGMVILTTHQDLPVA  193 (204)
T ss_pred             HHHHHHHCCCEEEEEecChhhhc
Confidence            9987643 457788888765543

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=4.4e-12  Score=104.40  Aligned_cols=159  Identities=13%  Similarity=0.257  Sum_probs=91.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-Ccccccceee---------ec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT---------LS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~   90 (248)
                      +.+.+...+..|.  .+.|.||||+|||||++++++ +..+.+|.+.++|.++..... .......+..         .+
T Consensus        24 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t  100 (271)
T PRK13632         24 ALKNVSFEINEGE--YVAILGHNGSGKSTISKILTG-LLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT  100 (271)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence            4444544555443  366999999999999999998 668889999998875531110 0000000000         01


Q ss_pred             ccceeeeCCCCcCcchhH---HHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           91 SANHVELSPSDAGFQDRY---VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      ..+++.+.....+.....   .+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....
T Consensus       101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~  180 (271)
T PRK13632        101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE  180 (271)
T ss_pred             HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            111111110000111110   122222221     1222334442            458999999999 8999999999


Q ss_pred             HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +++++.+...  +..+|++|++...+ . +.+|+..+
T Consensus       181 l~~~l~~~~~~~~~tiii~sH~~~~~-~-~~d~v~~l  215 (271)
T PRK13632        181 IKKIMVDLRKTRKKTLISITHDMDEA-I-LADKVIVF  215 (271)
T ss_pred             HHHHHHHHHHhcCcEEEEEEechhHH-h-hCCEEEEE
Confidence            9999988753  35788888887765 3 56776433

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.33  E-value=1.4e-11  Score=96.50  Aligned_cols=135  Identities=13%  Similarity=0.141  Sum_probs=76.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce------eeecccceeeeCCCCcCcchhHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL------TTLSSANHVELSPSDAGFQDRYV  109 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  109 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.+++.++..... ....+-.      ...+..+++.+.....+  ....
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~~~~~-~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--~~~~  103 (195)
T PRK13541         28 ITYIKGANGCGKSSLLRMIAG-IMQPSSGNIYYKNCNINNIAK-PYCTYIGHNLGLKLEMTVFENLKFWSEIYN--SAET  103 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCcccChhhh-hhEEeccCCcCCCccCCHHHHHHHHHHhcc--cHHH
Confidence            477999999999999999998 678899999988865431100 0000000      00000011100000000  0011


Q ss_pred             HHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh-cCCeeEEEEecCC
Q 025758          110 VQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNSS  170 (248)
Q Consensus       110 ~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~-~~~~~~Il~t~~~  170 (248)
                      ..+.++.+     .......+|+            ..+|+++++||| ..+|+.....+.+.+.+. ..+..+|++||+.
T Consensus       104 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~  183 (195)
T PRK13541        104 LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLE  183 (195)
T ss_pred             HHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            12211111     1112223332            448999999999 799999999999999754 3346788888887


Q ss_pred             Cccc
Q 025758          171 SKVT  174 (248)
Q Consensus       171 ~~~~  174 (248)
                      ..+.
T Consensus       184 ~~i~  187 (195)
T PRK13541        184 SSIK  187 (195)
T ss_pred             cccc
Confidence            6543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.3e-12  Score=113.25  Aligned_cols=169  Identities=20%  Similarity=0.291  Sum_probs=112.6

Q ss_pred             CcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc-----
Q 025758           11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE-----   85 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   85 (248)
                      ++.+-+|.-.+++.+...+..|.+..  |.|.||+|||||++++++ ...+++|.+.++|++..+.+|......-     
T Consensus        13 ~i~K~FggV~AL~~v~l~v~~GEV~a--L~GeNGAGKSTLmKiLsG-v~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~   89 (500)
T COG1129          13 GISKSFGGVKALDGVSLTVRPGEVHA--LLGENGAGKSTLMKILSG-VYPPDSGEILIDGKPVAFSSPRDALAAGIATVH   89 (500)
T ss_pred             cceEEcCCceeeccceeEEeCceEEE--EecCCCCCHHHHHHHHhC-cccCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence            44445677778888888888887777  999999999999999999 7799999999999877655554332111     


Q ss_pred             -----eeeecccceeee--CCCC-cCcchhHHHH----HHHHHHHhc-CCC----cCCC------------CCCeeEEEE
Q 025758           86 -----LTTLSSANHVEL--SPSD-AGFQDRYVVQ----EVIKEMAKN-RPI----DTKG------------KRGFKVLVL  136 (248)
Q Consensus        86 -----~~~~~~~~~~~~--~~~~-~~~~~~~~~~----~~~~~~~~~-~~~----~~~~------------~~~~~viii  136 (248)
                           ++.+++..++.+  .+.. .+..+....+    +.++.+.-. .+.    .++.            ..+.+|+|+
T Consensus        90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIl  169 (500)
T COG1129          90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLIL  169 (500)
T ss_pred             echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence                 122233333332  2222 2333333222    222222110 011    1110            337789999


Q ss_pred             eCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758          137 NEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       137 DE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ||| ..|+......|++++++.... ..+|++||+.+++. .+.+|+.+
T Consensus       170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~-~i~DritV  217 (500)
T COG1129         170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF-EIADRITV  217 (500)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH-HhcCEEEE
Confidence            999 789999999999999998654 57999999887777 78888743

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=4e-12  Score=104.79  Aligned_cols=158  Identities=19%  Similarity=0.320  Sum_probs=91.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee-------eec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT-------TLS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~   90 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++......   ....+-.+       ..+
T Consensus        20 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t   96 (274)
T PRK13647         20 ALKGLSLSIPEGS--KTALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST   96 (274)
T ss_pred             eeeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhc-CCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence            4555555555554  366999999999999999998 6788899999988755311000   00000000       001


Q ss_pred             ccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           91 SANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      +.+++.+.....+....   ..+.+.++.     .....+..+|+            ..+|+++++||| ..+|+..+..
T Consensus        97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~  176 (274)
T PRK13647         97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET  176 (274)
T ss_pred             HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence            11111111110111110   112222221     11223334442            458999999999 8999999999


Q ss_pred             HHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhh
Q 025758          150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       150 ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      +++++.+... +..+|++||+.+. ...+.+|+.
T Consensus       177 l~~~l~~~~~~g~tili~tH~~~~-~~~~~d~i~  209 (274)
T PRK13647        177 LMEILDRLHNQGKTVIVATHDVDL-AAEWADQVI  209 (274)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEE
Confidence            9999988743 4567777777554 445677763

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.32  E-value=2.3e-12  Score=100.54  Aligned_cols=148  Identities=17%  Similarity=0.290  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---cccccceeee--------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTTL--------   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------   89 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++......   ......+...        
T Consensus         7 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   83 (190)
T TIGR01166         7 VLKGLNFAAERGE--VLALLGANGAGKSTLLLHLNG-LLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA   83 (190)
T ss_pred             eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence            3444555555554  366999999999999999998 6688899999888654311000   0000000000        


Q ss_pred             -cccceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           90 -SSANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        90 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                       ++.+++.+.....+....   ..+.+.++.+     ....+..+|+            ..+|+++++||| ..||+...
T Consensus        84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  163 (190)
T TIGR01166        84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR  163 (190)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence             011111110000000100   1122222221     1222333442            458999999999 89999999


Q ss_pred             HHHHHHHHHhcC-CeeEEEEecCCC
Q 025758          148 HSLRRTMEKYSA-SCRLILCCNSSS  171 (248)
Q Consensus       148 ~~ll~~le~~~~-~~~~Il~t~~~~  171 (248)
                      ..+.+++.+... +..+|++||+.+
T Consensus       164 ~~~~~~l~~~~~~~~tili~sH~~~  188 (190)
T TIGR01166       164 EQMLAILRRLRAEGMTVVISTHDVD  188 (190)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeeccc
Confidence            999999988744 457888888764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.32  E-value=5.6e-12  Score=101.86  Aligned_cols=156  Identities=19%  Similarity=0.260  Sum_probs=89.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee-----eeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT-----TLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~   92 (248)
                      +++.+...+..|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.+.......   +...+-.+     ..+..
T Consensus        18 ~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~   94 (238)
T cd03249          18 ILKGLSLTIPPGK--TVALVGSSGCGKSTVVSLLER-FYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA   94 (238)
T ss_pred             ceeceEEEecCCC--EEEEEeCCCCCHHHHHHHHhc-cCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHH
Confidence            3444444444443  377999999999999999999 6678889998888643210000   00000000     01111


Q ss_pred             ceeeeCCCCcCcchhHHHHHH-----HHHHH-----------hcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEV-----IKEMA-----------KNRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+......   .....+.     +....           ...+..+|+            ..+|+++++||| ..||
T Consensus        95 e~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD  171 (238)
T cd03249          95 ENIRYGKPDAT---DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALD  171 (238)
T ss_pred             HHhhccCCCCC---HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence            22222111100   0001111     11110           111223442            458999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.....+.+.+.+...+..+|++|++.+.+ . +.+|+.++
T Consensus       172 ~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~-~-~~d~v~~l  210 (238)
T cd03249         172 AESEKLVQEALDRAMKGRTTIVIAHRLSTI-R-NADLIAVL  210 (238)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-h-hCCEEEEE
Confidence            999999999998876445688888887665 4 57776444

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.32  E-value=6.3e-12  Score=101.72  Aligned_cols=160  Identities=16%  Similarity=0.269  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC------ccccccee------e
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS------RNIDLELT------T   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------~   88 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++....+.      ....+-.+      .
T Consensus        16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   92 (241)
T cd03256          16 ALKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNG-LVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER   92 (241)
T ss_pred             EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence            4444554555543  366999999999999999998 6678889998888654321100      00000000      0


Q ss_pred             ecccceeeeCCCC--------cCc---chhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           89 LSSANHVELSPSD--------AGF---QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        89 ~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                      .++.+++.+....        .+.   .....+.+.++.+     ....+..+|+            ..+|+++++||| 
T Consensus        93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  172 (241)
T cd03256          93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV  172 (241)
T ss_pred             CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            1111111110000        000   0011122222221     1122234442            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..||+.....+.+.+.+...  +..+|++||+.+. ...+.+|+.++
T Consensus       173 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l  218 (241)
T cd03256         173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGL  218 (241)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            89999999999999988743  4567777777655 44667776443

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.32  E-value=1.1e-11  Score=99.06  Aligned_cols=155  Identities=14%  Similarity=0.219  Sum_probs=89.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~   92 (248)
                      +.+.+...+..|.  .+.+.||||+||||+++++++ +..+..|.+.+++..+....... .....+       ...+..
T Consensus        19 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~   95 (221)
T cd03244          19 VLKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFR-LVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIR   95 (221)
T ss_pred             cccceEEEECCCC--EEEEECCCCCCHHHHHHHHHc-CCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHH
Confidence            4555555555553  367999999999999999998 66888899988886442100000 000000       000111


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH-----HHh-----------cCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE-----MAK-----------NRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+...    .....+.+.++.     ...           .....+|.            ..+|+++++||| ..||
T Consensus        96 enl~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD  171 (221)
T cd03244          96 SNLDPFGE----YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVD  171 (221)
T ss_pred             HHhCcCCC----CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence            11111100    011111221111     111           12233442            458999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +..+..+.+++.+...+..+|++|++...+. . .+|+..+
T Consensus       172 ~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~-~d~i~~l  210 (221)
T cd03244         172 PETDALIQKTIREAFKDCTVLTIAHRLDTII-D-SDRILVL  210 (221)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-h-CCEEEEE
Confidence            9999999999998766667888888876653 2 4565443

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=6.5e-12  Score=101.63  Aligned_cols=159  Identities=16%  Similarity=0.223  Sum_probs=92.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--ee-----eccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--TT-----LSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~-----~~~~   92 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++....+.. .....+  +.     .+..
T Consensus        18 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~   94 (241)
T PRK14250         18 ILKDISVKFEGGA--IYTIVGPSGAGKSTLIKLINR-LIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK   94 (241)
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHH
Confidence            4455555555543  467999999999999999998 66889999999886543111000 000000  00     0111


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT  153 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~  153 (248)
                      +++.+.....+ .....+.+.++.+      ....+..+|+            ..+|+++++||| ..+|+.....+.+.
T Consensus        95 e~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  173 (241)
T PRK14250         95 DNIEYGPMLKG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL  173 (241)
T ss_pred             HHHhcchhhcC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            11111100000 0111222333221      1223334442            458999999999 89999999999999


Q ss_pred             HHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          154 MEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       154 le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+...  +..+|++||+... ...+.+|+..+
T Consensus       174 l~~~~~~~g~tii~~sH~~~~-~~~~~d~i~~l  205 (241)
T PRK14250        174 IVKLKNKMNLTVIWITHNMEQ-AKRIGDYTAFL  205 (241)
T ss_pred             HHHHHHhCCCEEEEEeccHHH-HHHhCCEEEEE
Confidence            988743  4567777777654 44677777544

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.32  E-value=9.5e-12  Score=97.86  Aligned_cols=148  Identities=14%  Similarity=0.129  Sum_probs=84.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~   92 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++............+        ...++.
T Consensus        16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   92 (200)
T PRK13540         16 LLQQISFHLPAGG--LLHLKGSNGAGKTTLLKLIAG-LLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLR   92 (200)
T ss_pred             EEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHH
Confidence            4444444454443  477999999999999999998 67888999999887553110000000000        000011


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHH
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM  154 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~l  154 (248)
                      +.+.+.... . .....+.+.++.+     .......+|+            ..+|+++++||| ..||+.....+.+.+
T Consensus        93 ~~~~~~~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l  170 (200)
T PRK13540         93 ENCLYDIHF-S-PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI  170 (200)
T ss_pred             HHHHHHHhc-C-cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence            111110000 0 0011122233321     1111223332            458999999999 899999999999999


Q ss_pred             HHhc-CCeeEEEEecCCCcc
Q 025758          155 EKYS-ASCRLILCCNSSSKV  173 (248)
Q Consensus       155 e~~~-~~~~~Il~t~~~~~~  173 (248)
                      .+.. ....+|++|++...+
T Consensus       171 ~~~~~~~~tiii~sh~~~~~  190 (200)
T PRK13540        171 QEHRAKGGAVLLTSHQDLPL  190 (200)
T ss_pred             HHHHHcCCEEEEEeCCchhc
Confidence            9863 345678888776543

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.32  E-value=8.2e-12  Score=100.18  Aligned_cols=160  Identities=16%  Similarity=0.229  Sum_probs=90.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC----Ccccccce--ee------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLEL--TT------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~------   88 (248)
                      +.+.+...+..|.  .+.|.||||+||||+++++++ +..+..|.+.++|.+.....+    .......+  +.      
T Consensus        20 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   96 (228)
T cd03257          20 ALDDVSFSIKKGE--TLGLVGESGSGKSTLARAILG-LLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN   96 (228)
T ss_pred             eecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence            4455555555553  467999999999999999998 668889999998875432110    00000000  00      


Q ss_pred             --ecccceeeeCCCCcCc-chhHHH----HHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758           89 --LSSANHVELSPSDAGF-QDRYVV----QEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (248)
Q Consensus        89 --~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l  142 (248)
                        .++.+++.+....... ......    .+.++.+      ....+..+|+            ..+|+++++||| ..|
T Consensus        97 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~L  176 (228)
T cd03257          97 PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSAL  176 (228)
T ss_pred             CcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence              0000111100000000 000000    1222221      1122233442            458999999999 899


Q ss_pred             CHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       143 ~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      |+.....+.+.+.+...  +..+|++||+.. ....+.+|+..+
T Consensus       177 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l  219 (228)
T cd03257         177 DVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVM  219 (228)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence            99999999999988754  456777777754 344566666544

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.32  E-value=6.8e-12  Score=102.45  Aligned_cols=160  Identities=19%  Similarity=0.228  Sum_probs=91.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc---ccccceee------ecc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTT------LSS   91 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~   91 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|..+.......   ...+-.+.      .++
T Consensus        16 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (256)
T TIGR03873        16 IVDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAG-ALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV   92 (256)
T ss_pred             EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence            4445555555443  367999999999999999998 66888899998886543111000   00000000      011


Q ss_pred             cceeeeC--CC-C-cCcc---hhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           92 ANHVELS--PS-D-AGFQ---DRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        92 ~~~~~~~--~~-~-~~~~---~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      .+++.+.  .. . ....   ....+.+.++.+     .......+|+            ..+|+++++||| ..||+..
T Consensus        93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  172 (256)
T TIGR03873        93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA  172 (256)
T ss_pred             HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence            1111110  00 0 0000   011122233221     1222334442            448999999999 8999999


Q ss_pred             HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+.+++.+... +..+|++|++.. ....+.+|+.++
T Consensus       173 ~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  210 (256)
T TIGR03873       173 QLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVL  210 (256)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            9999999988754 356677777655 445667777443

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.31  E-value=6.5e-12  Score=107.10  Aligned_cols=146  Identities=18%  Similarity=0.233  Sum_probs=85.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-----Ccccccceee--------ecccceeeeCCCCc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-----SRNIDLELTT--------LSSANHVELSPSDA  102 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------~~~~~~~~~~~~~~  102 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.++|.++.....     .......+..        .++.+++.+.....
T Consensus        25 i~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~  103 (354)
T TIGR02142        25 VTAIFGRSGSGKTTLIRLIAG-LTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA  103 (354)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence            367999999999999999998 678889999998876531110     0000000000        01111111110000


Q ss_pred             Ccch-hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--Ce
Q 025758          103 GFQD-RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SC  161 (248)
Q Consensus       103 ~~~~-~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~  161 (248)
                      .... ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+.....+.+.+.+...  +.
T Consensus       104 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~  183 (354)
T TIGR02142       104 RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI  183 (354)
T ss_pred             ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC
Confidence            0000 11122333221     1223334442            448999999999 89999999999999988754  45


Q ss_pred             eEEEEecCCCcccHHHhhhhhe
Q 025758          162 RLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+|++||+.+.+ ..+.+|+.+
T Consensus       184 tiiivtH~~~~~-~~~~d~i~~  204 (354)
T TIGR02142       184 PILYVSHSLQEV-LRLADRVVV  204 (354)
T ss_pred             EEEEEecCHHHH-HHhCCEEEE
Confidence            678888776544 466677643

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.31  E-value=1.9e-12  Score=106.17  Aligned_cols=161  Identities=19%  Similarity=0.279  Sum_probs=92.1

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---cccccceee------ec
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTT------LS   90 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~   90 (248)
                      .+++.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++......   ....+..+.      .+
T Consensus        21 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   97 (265)
T PRK10253         21 TVAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSR-LMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT   97 (265)
T ss_pred             EEeeecceEECCCC--EEEEECCCCCCHHHHHHHHcC-CCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence            35555555555553  467999999999999999998 6678889998888654311100   000000000      01


Q ss_pred             ccceeeeC--CCC---cCcc--hhHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHH
Q 025758           91 SANHVELS--PSD---AGFQ--DRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (248)
Q Consensus        91 ~~~~~~~~--~~~---~~~~--~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~  145 (248)
                      ..+++.+.  ...   ....  ....+.+.++.     .....+..+|+            ..+|+++++||| ..||+.
T Consensus        98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~  177 (265)
T PRK10253         98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS  177 (265)
T ss_pred             HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence            11111111  000   0000  11122233322     12223334442            458999999999 799999


Q ss_pred             HHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          146 AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       146 ~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ....+++.+.+...  +..+|++|++.. ....+.+|+..+
T Consensus       178 ~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l  217 (265)
T PRK10253        178 HQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIAL  217 (265)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            99999999988743  345666666654 455777877443

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.31  E-value=7.3e-12  Score=102.78  Aligned_cols=161  Identities=17%  Similarity=0.159  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-c--ccccee------eec
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-N--IDLELT------TLS   90 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~------~~~   90 (248)
                      .+++.+...+..|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.+........ .  ..+..+      ..+
T Consensus        25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t  101 (265)
T PRK10575         25 TLLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGR-HQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT  101 (265)
T ss_pred             EEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence            34555555555543  366999999999999999998 66788899988886542110000 0  000000      001


Q ss_pred             ccceeeeCCC-C---cCc---chhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHH
Q 025758           91 SANHVELSPS-D---AGF---QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (248)
Q Consensus        91 ~~~~~~~~~~-~---~~~---~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~  145 (248)
                      ..+++.+... .   .+.   .....+.+.++.+     ....+..+|+            ..+|+++|+||| ..||+.
T Consensus       102 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~  181 (265)
T PRK10575        102 VRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA  181 (265)
T ss_pred             HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            1111111100 0   000   0111122222221     2223334552            458999999999 899999


Q ss_pred             HHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          146 AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       146 ~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ....+.+++.+...  +..+|++||+.. ....+.+|+..+
T Consensus       182 ~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l  221 (265)
T PRK10575        182 HQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVAL  221 (265)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            99999999988743  456777777755 444666776444

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.31  E-value=8.3e-12  Score=100.72  Aligned_cols=156  Identities=17%  Similarity=0.287  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-c--ccc-----ceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-N--IDL-----ELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~--~~~-----~~~~~~~~   92 (248)
                      +++.+...+..|  ..+.|.||||+||||+++++++ +..+..|.+.+++.......... .  ..+     .+...+..
T Consensus        16 ~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G-l~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~   92 (236)
T cd03253          16 VLKDVSFTIPAG--KKVAIVGPSGSGKSTILRLLFR-FYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG   92 (236)
T ss_pred             eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhc-ccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence            333444444443  2477999999999999999998 66788899988876432100000 0  000     00001111


Q ss_pred             ceeeeCCCCcCcchhHHHHH---------HHHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQE---------VIKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~---------~~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+.....  .. ....+         .+..+       .......+|+            ..+|+++++||| ..||
T Consensus        93 ~nl~~~~~~~--~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD  169 (236)
T cd03253          93 YNIRYGRPDA--TD-EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALD  169 (236)
T ss_pred             HHHhhcCCCC--CH-HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            1111111110  00 00111         11110       0111223442            458999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.....+.+++.+...+..+|++|++...+ .. .+|+..+
T Consensus       170 ~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-~~-~d~~~~l  208 (236)
T cd03253         170 THTEREIQAALRDVSKGRTTIVIAHRLSTI-VN-ADKIIVL  208 (236)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-Hh-CCEEEEE
Confidence            999999999998876555677777777665 33 6777544

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.31  E-value=1.2e-11  Score=94.45  Aligned_cols=106  Identities=24%  Similarity=0.376  Sum_probs=65.1

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHc-CCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV  113 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (248)
                      ..++|.||+|+|||.+|+++|+.+. .....-+.++...+..                       ..+..        ..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~-----------------------~~~~~--------~~   52 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE-----------------------GDDVE--------SS   52 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS-----------------------HHHCS--------CH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc-----------------------cchHH--------hh
Confidence            3599999999999999999999886 4554444444433330                       00000        00


Q ss_pred             HHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------HHHHHHHHHHHHhc-----------CCeeEEEEecCCC
Q 025758          114 IKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------EAQHSLRRTMEKYS-----------ASCRLILCCNSSS  171 (248)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~~~~~ll~~le~~~-----------~~~~~Il~t~~~~  171 (248)
                      +..+....+... ...+..||+|||+|..++           ..++.|++++|+..           .++.||+++|-..
T Consensus        53 ~~~l~~~~~~~v-~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~  131 (171)
T PF07724_consen   53 VSKLLGSPPGYV-GAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA  131 (171)
T ss_dssp             CHHHHHHTTCHH-HHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred             hhhhhhccccee-eccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence            011100000000 011223999999999999           99999999998642           3456788877654


Q ss_pred             c
Q 025758          172 K  172 (248)
Q Consensus       172 ~  172 (248)
                      .
T Consensus       132 ~  132 (171)
T PF07724_consen  132 E  132 (171)
T ss_dssp             H
T ss_pred             c
Confidence            3

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.30  E-value=1.6e-10  Score=106.73  Aligned_cols=206  Identities=19%  Similarity=0.206  Sum_probs=122.0

Q ss_pred             CCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      .+|.+++|+....+.+...+..  ....+++|+|++|||||++|+++..........-+.+++....       .    .
T Consensus       373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~-------~----~  441 (686)
T PRK15429        373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP-------A----G  441 (686)
T ss_pred             ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC-------h----h
Confidence            4678999988877776655442  2233599999999999999999987432223232333221110       0    0


Q ss_pred             eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---------
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------  158 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---------  158 (248)
                      ..   .. .+.....+..... .......+.         ..+...++|||++.|+...+..|++.+++..         
T Consensus       442 ~~---~~-~lfg~~~~~~~g~-~~~~~g~le---------~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~  507 (686)
T PRK15429        442 LL---ES-DLFGHERGAFTGA-SAQRIGRFE---------LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI  507 (686)
T ss_pred             Hh---hh-hhcCccccccccc-ccchhhHHH---------hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCc
Confidence            00   00 0000000000000 000011111         1234689999999999999999999997632         


Q ss_pred             --CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHHH----cC--C-CCCHHHHHHHH
Q 025758          159 --ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAKK----EG--L-QLPSGFATRLA  218 (248)
Q Consensus       159 --~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~~----~~--~-~~~~~~~~~l~  218 (248)
                        .++++|++|+...       .+...+-.|.  ..|.+||+..  +++..++...+.+    .+  + .++++++..+.
T Consensus       508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~  587 (686)
T PRK15429        508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLS  587 (686)
T ss_pred             ccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence              2357888877653       2444455565  4577777753  4444444433322    22  2 47899999998


Q ss_pred             HH-ccccHHHHHHHHHHHhhhcc
Q 025758          219 EK-SNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       219 ~~-~~g~~r~~~~~l~~~~~~~~  240 (248)
                      .. ..||+|++.+.++.++....
T Consensus       588 ~y~WPGNvrEL~~~i~~a~~~~~  610 (686)
T PRK15429        588 NMEWPGNVRELENVIERAVLLTR  610 (686)
T ss_pred             hCCCCCcHHHHHHHHHHHHHhCC
Confidence            66 48999999999999986543

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.30  E-value=8.5e-12  Score=101.67  Aligned_cols=161  Identities=17%  Similarity=0.247  Sum_probs=90.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc-------C-------Ccccccce
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-------G-------SRNIDLEL   86 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~-------~-------~~~~~~~~   86 (248)
                      +++.+...+..|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++....       +       ........
T Consensus        15 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~   91 (252)
T TIGR03005        15 VLDGLNFSVAAGE--KVALIGPSGSGKSTILRILMT-LEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM   91 (252)
T ss_pred             EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence            3444444455443  367999999999999999998 66888999998886553110       0       00000000


Q ss_pred             ee--------ecccceeeeCC-CCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEe
Q 025758           87 TT--------LSSANHVELSP-SDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLN  137 (248)
Q Consensus        87 ~~--------~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiD  137 (248)
                      ..        .+..+++.+.. ...+...   ...+.+.++.+     ....+..+|+            ..+|+++++|
T Consensus        92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  171 (252)
T TIGR03005        92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD  171 (252)
T ss_pred             EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            00        00000110000 0000000   01122222221     1122233442            4489999999


Q ss_pred             CC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhheee
Q 025758          138 EV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       138 E~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      || ..||+.....+.+++.+..+  +..+|++|++... ...+.+|+.++.
T Consensus       172 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~  221 (252)
T TIGR03005       172 EVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF-AREFADRVCFFD  221 (252)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEEEEE
Confidence            99 79999999999999988743  4567777777654 446667775443

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.30  E-value=4e-12  Score=100.55  Aligned_cols=153  Identities=14%  Similarity=0.215  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~   92 (248)
                      +.+.+...+.+|.  .+.+.||+|+||||+++++++ +..+..|.+.+++.......... .....+       ...+..
T Consensus        23 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~   99 (207)
T cd03369          23 VLKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFR-FLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIR   99 (207)
T ss_pred             cccCceEEECCCC--EEEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHH
Confidence            4555555555543  467999999999999999998 66788899988886432100000 000000       000111


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      +++.+..   . .....+.+.++  .......+++            ..+|+++++||+ ..+|+.....+.+++.+...
T Consensus       100 ~~l~~~~---~-~~~~~~~~~l~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~  173 (207)
T cd03369         100 SNLDPFD---E-YSDEEIYGALR--VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT  173 (207)
T ss_pred             HHhcccC---C-CCHHHHHHHhh--ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC
Confidence            1111110   0 01111222222  1122233332            448999999999 89999999999999998765


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhee
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +..+|++|++...+. . .+|+..+
T Consensus       174 ~~tiii~th~~~~~~-~-~d~v~~l  196 (207)
T cd03369         174 NSTILTIAHRLRTII-D-YDKILVM  196 (207)
T ss_pred             CCEEEEEeCCHHHHh-h-CCEEEEE
Confidence            567888888877653 3 4666444

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.30  E-value=3.8e-12  Score=104.54  Aligned_cols=160  Identities=15%  Similarity=0.200  Sum_probs=91.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceeeecc--------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLSS--------   91 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------   91 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.+........ .....+.....        
T Consensus        28 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  104 (267)
T PRK15112         28 AVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAG-MIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ  104 (267)
T ss_pred             eeeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch
Confidence            4555555565554  366999999999999999998 67888999999886543111000 00000000000        


Q ss_pred             --cceeeeCCC-CcCcch---hHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           92 --ANHVELSPS-DAGFQD---RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        92 --~~~~~~~~~-~~~~~~---~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                        ...+.+... ......   ...+.+.++.+.      ...+..+|+            ..+|+++|+||| ..||+..
T Consensus       105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~  184 (267)
T PRK15112        105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM  184 (267)
T ss_pred             hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence              000000000 000000   011222332221      112233442            448999999999 8999999


Q ss_pred             HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+.++|.+..+  +..+|++||+... ...+.+|+..+
T Consensus       185 ~~~l~~~l~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l  223 (267)
T PRK15112        185 RSQLINLMLELQEKQGISYIYVTQHLGM-MKHISDQVLVM  223 (267)
T ss_pred             HHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhcCEEEEE
Confidence            9999999988743  4567777777654 45666777544

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.30  E-value=7.1e-12  Score=101.18  Aligned_cols=156  Identities=22%  Similarity=0.306  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--------Ccccccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--------SRNIDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~   92 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.+......        .......+...++.
T Consensus        17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~   93 (237)
T cd03252          17 ILDNISLRIKPGE--VVGIVGRSGSGKSTLTKLIQR-FYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR   93 (237)
T ss_pred             ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence            3344444444443  467999999999999999998 667888999888865421000        00000000001111


Q ss_pred             ceeeeCCCCcCcchhHHHHHH---------HHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEV---------IKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~---------~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+...  ... ...+.+.         +..+       .......+|+            ..+|+++++||| ..+|
T Consensus        94 ~nl~~~~~--~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD  170 (237)
T cd03252          94 DNIALADP--GMS-MERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD  170 (237)
T ss_pred             HHhhccCC--CCC-HHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence            22222111  000 0011111         1110       1112334442            448999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.....+.+.+.+...+..+|++||+...+ . ..+|+..+
T Consensus       171 ~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~-~~d~v~~l  209 (237)
T cd03252         171 YESEHAIMRNMHDICAGRTVIIIAHRLSTV-K-NADRIIVM  209 (237)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-H-hCCEEEEE
Confidence            999999999999876556788888887765 3 35666433

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PHA02244 ATPase-like protein

Probab=99.30  E-value=7.6e-11  Score=98.95  Aligned_cols=132  Identities=14%  Similarity=0.164  Sum_probs=82.2

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCc
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (248)
                      ..+.+|+..+  .+++|+||+|||||++|+.+|..+..+   .+.+++.                 .......++.... 
T Consensus       110 ~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg~p---fv~In~l-----------------~d~~~L~G~i~~~-  166 (383)
T PHA02244        110 ADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALDLD---FYFMNAI-----------------MDEFELKGFIDAN-  166 (383)
T ss_pred             HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhCCC---EEEEecC-----------------hHHHhhccccccc-
Confidence            3455666554  358899999999999999999865322   1111100                 0000001111000 


Q ss_pred             CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCeeEEEEecCC-
Q 025758          103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----------SASCRLILCCNSS-  170 (248)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~-----------~~~~~~Il~t~~~-  170 (248)
                      +..   .....+..+           .+..+++|||++.+.+..+..|..+++..           +.+..+|+++|.. 
T Consensus       167 g~~---~dgpLl~A~-----------~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~  232 (383)
T PHA02244        167 GKF---HETPFYEAF-----------KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLG  232 (383)
T ss_pred             ccc---cchHHHHHh-----------hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCc
Confidence            000   001112211           24569999999999999999999999631           2455788888863 


Q ss_pred             ----------CcccHHHhhhhheeeecCCCH
Q 025758          171 ----------SKVTEAIRSRCLNIRINSPTE  191 (248)
Q Consensus       171 ----------~~~~~~l~sR~~~i~~~~~~~  191 (248)
                                ..+.+++++|+..+.|+.|+.
T Consensus       233 ~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~  263 (383)
T PHA02244        233 KGADHIYVARNKIDGATLDRFAPIEFDYDEK  263 (383)
T ss_pred             cCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence                      467899999999999999874

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.30  E-value=1e-11  Score=100.07  Aligned_cols=159  Identities=17%  Similarity=0.260  Sum_probs=88.4

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceee------ecccce
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTT------LSSANH   94 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~   94 (248)
                      .+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.+........ ...+..+.      .+..++
T Consensus        15 l~~is~~i~~Ge--~~~i~G~nG~GKStLl~~l~G-~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~   91 (235)
T cd03299          15 LKNVSLEVERGD--YFVILGPTGSGKSVLLETIAG-FIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN   91 (235)
T ss_pred             eeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence            333444444432  477999999999999999998 67888999999886543111100 00000000      000011


Q ss_pred             eeeCCCCcCcc---hhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH
Q 025758           95 VELSPSDAGFQ---DRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT  153 (248)
Q Consensus        95 ~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~  153 (248)
                      +.+.....+..   ....+.+.++.+     ....+..+|+            ..+++++++||| ..||+..+..++++
T Consensus        92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~  171 (235)
T cd03299          92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE  171 (235)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHH
Confidence            11000000000   001112222211     1222334442            458999999999 89999999999999


Q ss_pred             HHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          154 MEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       154 le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+...  ...+|++|++... .+.+.+|+..+
T Consensus       172 l~~~~~~~~~tili~tH~~~~-~~~~~d~i~~l  203 (235)
T cd03299         172 LKKIRKEFGVTVLHVTHDFEE-AWALADKVAIM  203 (235)
T ss_pred             HHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence            988643  4567777776544 45666777443

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=5.7e-12  Score=103.65  Aligned_cols=159  Identities=14%  Similarity=0.175  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-Ccccccceeeec---------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTTLS---------   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------   90 (248)
                      +.+.+...+.+|.  .+.|.||||+|||||++++++ +..+.+|.+.++|..+..... .......+..-.         
T Consensus        24 ~l~~isl~i~~Ge--~~~I~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  100 (269)
T PRK13648         24 TLKDVSFNIPKGQ--WTSIVGHNGSGKSTIAKLMIG-IEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI  100 (269)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhccccc
Confidence            4444444454443  366999999999999999998 668889999998875431100 000000000000         


Q ss_pred             ccceeeeCCCCcCcchh---HHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           91 SANHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      ..+.+.+.....+....   ..+.+.++.+.     ...+..+|+            ..+|+++++||| ..||+.....
T Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~  180 (269)
T PRK13648        101 VKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN  180 (269)
T ss_pred             HHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            00001111000011111   11222222221     122223442            458999999999 8999999999


Q ss_pred             HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.+++.+...  +..+|++|++...+. . .+|+.++
T Consensus       181 l~~~L~~~~~~~~~tiiivtH~~~~~~-~-~d~i~~l  215 (269)
T PRK13648        181 LLDLVRKVKSEHNITIISITHDLSEAM-E-ADHVIVM  215 (269)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCchHHh-c-CCEEEEE
Confidence            9999988643  467888888877654 3 6776443

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=3.8e-12  Score=103.78  Aligned_cols=162  Identities=13%  Similarity=0.226  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----Ccccceecccceee--ccC-Ccccccce--ee
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKI--DAG-SRNIDLEL--TT   88 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~--~~~-~~~~~~~~--~~   88 (248)
                      ..+.+.+...+.+|.  .+.|.||||+||||+++++++ +..+     .+|.+.++|.++..  ..+ .......+  +.
T Consensus        17 ~~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~   93 (253)
T PRK14267         17 NHVIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNR-LLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQY   93 (253)
T ss_pred             eeeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhc-cCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecC
Confidence            345555665565554  366999999999999999999 4444     48989888865431  000 00000000  00


Q ss_pred             ------ecccceeeeCCCCcCc--ch---hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEE
Q 025758           89 ------LSSANHVELSPSDAGF--QD---RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVL  136 (248)
Q Consensus        89 ------~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viii  136 (248)
                            .++.+++.+.....+.  ..   ...+.+.++.+         .......+|+            ..+|+++++
T Consensus        94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  173 (253)
T PRK14267         94 PNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM  173 (253)
T ss_pred             CccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence                  0111111110000000  00   01122222221         1112223332            458999999


Q ss_pred             eCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       137 DE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ||| ..||+.....+.++|.+...+..+|++||+... ...+.+|+.++
T Consensus       174 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~-~~~~~d~i~~l  221 (253)
T PRK14267        174 DEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ-AARVSDYVAFL  221 (253)
T ss_pred             cCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH-HHhhCCEEEEE
Confidence            999 899999999999999987655667777777654 34666776444

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.4e-10  Score=107.72  Aligned_cols=197  Identities=18%  Similarity=0.229  Sum_probs=126.1

Q ss_pred             CCcccccccHHHHHHHHHHhh------------cCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758           10 KTLDQVIVHQDIAQNLKKLVT------------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~------------~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      .+|+++-|...++..|+..+-            +=..|. ++|+||||||||..|+++|..+- ....++.....     
T Consensus       262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s-~~~~kisffmr-----  335 (1080)
T KOG0732|consen  262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACS-RGNRKISFFMR-----  335 (1080)
T ss_pred             cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhc-ccccccchhhh-----
Confidence            578888888888888887652            111233 99999999999999999998541 11121111000     


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH-----------
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------  145 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----------  145 (248)
                                   +..     ..-+..+.+   .++.+..+-...     ...+|.|++.||+|++.+.           
T Consensus       336 -------------kga-----D~lskwvgE---aERqlrllFeeA-----~k~qPSIIffdeIdGlapvrSskqEqih~S  389 (1080)
T KOG0732|consen  336 -------------KGA-----DCLSKWVGE---AERQLRLLFEEA-----QKTQPSIIFFDEIDGLAPVRSSKQEQIHAS  389 (1080)
T ss_pred             -------------cCc-----hhhccccCc---HHHHHHHHHHHH-----hccCceEEeccccccccccccchHHHhhhh
Confidence                         000     000111111   233333222111     1457889999999988642           


Q ss_pred             HHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025758          146 AQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK  220 (248)
Q Consensus       146 ~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~  220 (248)
                      ....|+.++......  +.+|-+||.+..+.++++.+.   ..+.|+.|+.+...+|+.-+-.+..=.++......+++.
T Consensus       390 IvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~  469 (1080)
T KOG0732|consen  390 IVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEE  469 (1080)
T ss_pred             HHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Confidence            234567777766444  456666889999999998766   579999999999999998765555556788899999988


Q ss_pred             ccccHHHHHH-HHHHHhhh
Q 025758          221 SNRSLRRAIL-SFETCRVQ  238 (248)
Q Consensus       221 ~~g~~r~~~~-~l~~~~~~  238 (248)
                      +.|-.+.-++ +...+++.
T Consensus       470 t~gy~gaDlkaLCTeAal~  488 (1080)
T KOG0732|consen  470 TSGYGGADLKALCTEAALI  488 (1080)
T ss_pred             ccccchHHHHHHHHHHhhh
Confidence            8665544444 33444433

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.30  E-value=4.1e-12  Score=103.18  Aligned_cols=160  Identities=17%  Similarity=0.236  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-----cccceecccceeeccC---Ccccccceee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-----AEKVKVENKTWKIDAG---SRNIDLELTT----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~----   88 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.     +|.+.++|.++.....   .......+..    
T Consensus        16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~   92 (247)
T TIGR00972        16 ALKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNR-MNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN   92 (247)
T ss_pred             eecceeEEECCCC--EEEEECCCCCCHHHHHHHHhc-cCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence            4555555555553  366999999999999999998 56666     8999998875531100   0000000000    


Q ss_pred             ---ecccceeeeCCCCcCc-ch---hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           89 ---LSSANHVELSPSDAGF-QD---RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        89 ---~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                         .+..+++.+.....+. ..   ...+.+.++.+         ....+..+|+            ..+|+++++||| 
T Consensus        93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt  172 (247)
T TIGR00972        93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT  172 (247)
T ss_pred             cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence               0111111110000000 00   01122222221         1222334442            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..||+.....+.+++.+......+|++|++.. ....+.+|+..+
T Consensus       173 ~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~-~~~~~~d~i~~l  216 (247)
T TIGR00972       173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQ-QAARISDRTAFF  216 (247)
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCeEEEEecCHH-HHHHhCCEEEEE
Confidence            79999999999999988765556777777655 444666777444

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=6.8e-12  Score=103.42  Aligned_cols=159  Identities=16%  Similarity=0.223  Sum_probs=92.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--Ccccccceee---------e
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--SRNIDLELTT---------L   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~   89 (248)
                      +++.+...+++|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++....+  .......+..         .
T Consensus        17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~   93 (274)
T PRK13644         17 ALENINLVIKKGE--YIGIIGKNGSGKSTLALHLNG-LLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR   93 (274)
T ss_pred             eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence            4455555555553  366999999999999999998 678899999998875531110  0000000000         0


Q ss_pred             cccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758           90 SSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (248)
                      +..+++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..+.
T Consensus        94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~  173 (274)
T PRK13644         94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI  173 (274)
T ss_pred             hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            11111111110001110   11122222221     1222334442            458999999999 899999999


Q ss_pred             HHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       149 ~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+++.+.+... +..+|++||+...+ + ..+|+..+
T Consensus       174 ~l~~~l~~l~~~g~til~~tH~~~~~-~-~~d~v~~l  208 (274)
T PRK13644        174 AVLERIKKLHEKGKTIVYITHNLEEL-H-DADRIIVM  208 (274)
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHHHH-h-hCCEEEEE
Confidence            99999988654 46788888887765 3 47777443

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.30  E-value=2.6e-12  Score=102.78  Aligned_cols=144  Identities=17%  Similarity=0.221  Sum_probs=81.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh---HHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---YVVQE  112 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  112 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.+++.......  ....+ ....++.+++.+.....+....   ....+
T Consensus        50 ~~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~--~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~  125 (224)
T cd03220          50 RIGLIGRNGAGKSTLLRLLAG-IYPPDSGTVTVRGRVSSLLG--LGGGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDE  125 (224)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEchhhc--ccccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            377999999999999999998 66888999988886432100  00000 0011111111111000000000   11122


Q ss_pred             HHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcc
Q 025758          113 VIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKV  173 (248)
Q Consensus       113 ~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~  173 (248)
                      .++.+     .......+|+            ..+|+++|+||| ..||+..+..+.+.+.+.... ..+|++|++.. .
T Consensus       126 ~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~  204 (224)
T cd03220         126 IIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-S  204 (224)
T ss_pred             HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H
Confidence            22211     1112223332            458999999999 799999999999999877444 55667766654 4


Q ss_pred             cHHHhhhhhee
Q 025758          174 TEAIRSRCLNI  184 (248)
Q Consensus       174 ~~~l~sR~~~i  184 (248)
                      ...+.+|+..+
T Consensus       205 ~~~~~d~i~~l  215 (224)
T cd03220         205 IKRLCDRALVL  215 (224)
T ss_pred             HHHhCCEEEEE
Confidence            44556666444

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=9.1e-12  Score=107.22  Aligned_cols=146  Identities=16%  Similarity=0.280  Sum_probs=85.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-------ccccceee------ecccceeeeCCCCc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-------NIDLELTT------LSSANHVELSPSDA  102 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~  102 (248)
                      .+.|.||||+|||||++++++ +..+.+|.+.++|.++....+..       ...+-.+.      .++.+++.+.....
T Consensus        56 i~~LvG~NGsGKSTLLr~I~G-l~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~  134 (400)
T PRK10070         56 IFVIMGLSGSGKSTMVRLLNR-LIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA  134 (400)
T ss_pred             EEEEECCCCchHHHHHHHHHc-CCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence            378999999999999999998 77889999999887654211100       00000000      01111111111000


Q ss_pred             Ccch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--
Q 025758          103 GFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--  159 (248)
Q Consensus       103 ~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--  159 (248)
                      +...   ...+.+.++.+     ....+..+|+            ..+|+++|+||| ..||+.....+.+.+.+...  
T Consensus       135 ~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~  214 (400)
T PRK10070        135 GINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH  214 (400)
T ss_pred             CCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC
Confidence            1110   11122222222     2223344552            458999999999 89999999999999987642  


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhe
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +..+|++||+.+.+ ..+.+|+.+
T Consensus       215 g~TIIivTHd~~~~-~~~~Dri~v  237 (400)
T PRK10070        215 QRTIVFISHDLDEA-MRIGDRIAI  237 (400)
T ss_pred             CCeEEEEECCHHHH-HHhCCEEEE
Confidence            45677777776543 466677643

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=1.1e-11  Score=101.99  Aligned_cols=161  Identities=12%  Similarity=0.165  Sum_probs=90.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeec--cC-Ccccccceee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKID--AG-SRNIDLELTT----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~----   88 (248)
                      +++.+...+.+|.  .+.|.||||+|||||++++++ +..     +..|.+.++|.++...  .+ .......+..    
T Consensus        28 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  104 (269)
T PRK14259         28 AVKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNR-MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN  104 (269)
T ss_pred             EEcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-cccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence            4445555555553  366999999999999999998 433     5788888888654210  00 0000000000    


Q ss_pred             ---ecccceeeeCCCCcCcch--hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758           89 ---LSSANHVELSPSDAGFQD--RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-DK  141 (248)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d~  141 (248)
                         .++.+++.+.....+...  ...+.+.++.+         .......+|+            ..+|+++++||| ..
T Consensus       105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g  184 (269)
T PRK14259        105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA  184 (269)
T ss_pred             cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence               011111111111111110  11122223222         1122223442            458999999999 89


Q ss_pred             CCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758          142 LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       142 l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ||+.....+.+++.+......+|++||+.. ....+.+|..++.
T Consensus       185 LD~~~~~~l~~~l~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~  227 (269)
T PRK14259        185 LDPISTLKIEETMHELKKNFTIVIVTHNMQ-QAVRVSDMTAFFN  227 (269)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence            999999999999998755556777777754 4456667765554

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=5.3e-12  Score=102.68  Aligned_cols=161  Identities=18%  Similarity=0.275  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----CcccceecccceeeccC--Ccccccceee----
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDAG--SRNIDLELTT----   88 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~----   88 (248)
                      .+.+.+...+.+|.  .+.|.||||+||||+++++++ +..+     .+|.+.++|.+.....+  .......+..    
T Consensus        17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~   93 (249)
T PRK14253         17 QALKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNR-MNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN   93 (249)
T ss_pred             eeeecceEEecCCC--EEEEECCCCCCHHHHHHHHHh-hcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence            34555555555553  366999999999999999999 4443     47888888764421000  0000000000    


Q ss_pred             ---ecccceeeeCCCCcCcchh----HHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           89 ---LSSANHVELSPSDAGFQDR----YVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                         .++.+++.+.....+....    ..+.+.++.+         .......+|+            ..+|+++++||| 
T Consensus        94 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~  173 (249)
T PRK14253         94 PFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPT  173 (249)
T ss_pred             cCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence               0111111111000010000    0111112111         1122223442            448999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..||+.....+.+++.+..+...+|++|++.. ....+.+|+.++
T Consensus       174 ~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~-~~~~~~d~i~~l  217 (249)
T PRK14253        174 SALDPIATHKIEELMEELKKNYTIVIVTHSMQ-QARRISDRTAFF  217 (249)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEE
Confidence            89999999999999998866666777777654 455667777443

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.29  E-value=4.7e-12  Score=103.64  Aligned_cols=161  Identities=11%  Similarity=0.177  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeec-cCC-c-ccccce--ee-
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKID-AGS-R-NIDLEL--TT-   88 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~-~~~-~-~~~~~~--~~-   88 (248)
                      .+++.+...+.+|.  .+.|.||||+||||+++++++ +..     +..|.+.+++..+... ... . .....+  +. 
T Consensus        27 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~  103 (260)
T PRK10744         27 HALKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNR-MYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP  103 (260)
T ss_pred             EEeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhc-ccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCC
Confidence            34455555555543  366999999999999999998 443     4678898888654310 000 0 000000  00 


Q ss_pred             ----ecccceeeeCCCCc-Ccch---hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC
Q 025758           89 ----LSSANHVELSPSDA-GFQD---RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV  139 (248)
Q Consensus        89 ----~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~  139 (248)
                          .+..+++.+..... +...   ...+.+.++.+         .......+|+            ..+|+++++|||
T Consensus       104 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP  183 (260)
T PRK10744        104 TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP  183 (260)
T ss_pred             ccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence                01111111110000 1110   01122333322         1223334442            458999999999


Q ss_pred             -CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 -d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                       ..+|+.....+++.+.+......+|++||+.. ....+.+|+..+
T Consensus       184 t~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  228 (260)
T PRK10744        184 CSALDPISTGRIEELITELKQDYTVVIVTHNMQ-QAARCSDYTAFM  228 (260)
T ss_pred             CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence             89999999999999998755556777777754 445666776444

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.29  E-value=1.3e-11  Score=101.49  Aligned_cols=158  Identities=13%  Similarity=0.195  Sum_probs=86.9

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC------cccccceee------e
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS------RNIDLELTT------L   89 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~------~   89 (248)
                      .+.+...+..|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++......      ....+-.+.      .
T Consensus        23 l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~   99 (269)
T PRK11831         23 FDNISLTVPRGK--ITAIMGPSGIGKTTLLRLIGG-QIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM   99 (269)
T ss_pred             EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence            334444444442  477999999999999999998 6678899999888654311110      000000000      0


Q ss_pred             cccceeeeCCCC-cCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           90 SSANHVELSPSD-AGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        90 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      +..+++.+.... ......   ..+.+.++.+     ....+..+|+            ..+|+++++||| ..||+...
T Consensus       100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~  179 (269)
T PRK11831        100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM  179 (269)
T ss_pred             CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            001111110000 000000   0111122211     1112223442            458999999999 89999999


Q ss_pred             HHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       148 ~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ..+.+.+.+..+  +..+|++||+...+ ..+.+|+..
T Consensus       180 ~~l~~~l~~~~~~~g~tiiivsH~~~~~-~~~~d~v~~  216 (269)
T PRK11831        180 GVLVKLISELNSALGVTCVVVSHDVPEV-LSIADHAYI  216 (269)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEecCHHHH-HHhhCEEEE
Confidence            999999988743  45677777775443 456666643

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=4.8e-12  Score=105.00  Aligned_cols=159  Identities=18%  Similarity=0.220  Sum_probs=92.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-----cc--cccceee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RN--IDLELTT-----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~-----   88 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.+.......     ..  ..+-++.     
T Consensus        21 ~l~~vsl~i~~Ge--~v~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l   97 (288)
T PRK13643         21 ALFDIDLEVKKGS--YTALIGHTGSGKSTLLQHLNG-LLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL   97 (288)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence            4455555555553  366999999999999999998 7788999999998765311000     00  0000000     


Q ss_pred             --ecccceeeeCCCCcCcchh---HHHHHHHHH------HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758           89 --LSSANHVELSPSDAGFQDR---YVVQEVIKE------MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (248)
Q Consensus        89 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (248)
                        .++.+.+.+.+...+....   ..+.+.++.      +....+..+|+            ..+|+++++||| ..||+
T Consensus        98 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~  177 (288)
T PRK13643         98 FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP  177 (288)
T ss_pred             ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCH
Confidence              0111112111111111111   112222221      11222334442            448999999999 89999


Q ss_pred             HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ..+..+++++.+... +..+|++||+.. ....+.+|+.+
T Consensus       178 ~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~  216 (288)
T PRK13643        178 KARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYL  216 (288)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence            999999999988754 456777777654 44466777743

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.29  E-value=1.4e-11  Score=98.42  Aligned_cols=159  Identities=15%  Similarity=0.293  Sum_probs=90.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc------ccccceee------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR------NIDLELTT------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------   88 (248)
                      +.+.+...+.+|.  .+.+.||||+||||+++++++ +..+.+|.+.++|.++....+..      ...+..+.      
T Consensus        20 il~~vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   96 (220)
T TIGR02982        20 VLFDINLEINPGE--IVILTGPSGSGKTTLLTLIGG-LRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF   96 (220)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence            4445555555543  467999999999999999998 66888999998887553111100      00000000      


Q ss_pred             ecccceeeeCCC-CcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           89 LSSANHVELSPS-DAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        89 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      .+..+.+.+... ......   ...+.+.++.+     ....+..+++            ..+|+++++||| ..||+..
T Consensus        97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~  176 (220)
T TIGR02982        97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS  176 (220)
T ss_pred             CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence            000001110000 000000   01122222221     1122223332            458999999999 8999999


Q ss_pred             HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +..+.+.+++...  +..+|++|++.. +. .+.+|+.++
T Consensus       177 ~~~l~~~l~~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l  214 (220)
T TIGR02982       177 GRDVVELMQKLAREQGCTILIVTHDNR-IL-DVADRIVHM  214 (220)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCHH-HH-hhCCEEEEE
Confidence            9999999988753  467888888864 43 566666444

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.29  E-value=7.4e-12  Score=100.34  Aligned_cols=159  Identities=18%  Similarity=0.305  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-c--ccccee-----eeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-N--IDLELT-----TLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-----~~~~~   92 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++....... .  ..+-.+     ..++.
T Consensus        29 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~  105 (226)
T cd03248          29 VLQDVSFTLHPGE--VTALVGPSGSGKSTVVALLEN-FYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQ  105 (226)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHH
Confidence            4455555555443  367999999999999999998 66888899988886543110000 0  000000     00111


Q ss_pred             ceeeeCCCCcCcch-hHH-----HHHHHHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           93 NHVELSPSDAGFQD-RYV-----VQEVIKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        93 ~~~~~~~~~~~~~~-~~~-----~~~~~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      +++.+......... ...     +.+.++.+       .......+|+            ..+|+++++||| ..||+..
T Consensus       106 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~  185 (226)
T cd03248         106 DNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES  185 (226)
T ss_pred             HHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            11221111100000 000     11112221       1112223342            458999999999 7999999


Q ss_pred             HHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+.+++.+...+..+|++|++...+ .. .+|+..+
T Consensus       186 ~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~i~~l  221 (226)
T cd03248         186 EQQVQQALYDWPERRTVLVIAHRLSTV-ER-ADQILVL  221 (226)
T ss_pred             HHHHHHHHHHHcCCCEEEEEECCHHHH-Hh-CCEEEEe
Confidence            999999998876667788888887665 33 5665444

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=3e-12  Score=104.41  Aligned_cols=162  Identities=16%  Similarity=0.220  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----CcccceecccceeeccCC---cccccceee--
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDAGS---RNIDLELTT--   88 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~--   88 (248)
                      ..+.+.+...+..|.  .+.|.||||+|||||++++++ +..+     ..|.+.++|..+......   ......+..  
T Consensus        20 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~   96 (254)
T PRK14273         20 FKALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNR-MNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQT   96 (254)
T ss_pred             ceeecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhc-cccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeec
Confidence            345556666666553  366999999999999999998 4444     478888888654310000   000000000  


Q ss_pred             -----ecccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeC
Q 025758           89 -----LSSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNE  138 (248)
Q Consensus        89 -----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE  138 (248)
                           .++.+++.+.....+...    ...+.+.++.+         .......+|+            ..+|+++|+||
T Consensus        97 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE  176 (254)
T PRK14273         97 PNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE  176 (254)
T ss_pred             cccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence                 111111111110001000    11122222221         1222334442            44899999999


Q ss_pred             C-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       139 ~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      | ..||+.....+.+++.+...+..+|++|++... ...+.+|+.++
T Consensus       177 Pt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~-~~~~~d~i~~l  222 (254)
T PRK14273        177 PTSALDPISTGKIEELIINLKESYTIIIVTHNMQQ-AGRISDRTAFF  222 (254)
T ss_pred             CCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            9 899999999999999888655667777777654 44667777544

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=1.5e-11  Score=100.41  Aligned_cols=160  Identities=14%  Similarity=0.192  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--ccccc--eee------ec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLE--LTT------LS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~------~~   90 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+..  ...+.  .+.      .+
T Consensus        20 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   96 (255)
T PRK11300         20 AVNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTG-FYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT   96 (255)
T ss_pred             EEEeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhC-CcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence            4444444454443  477999999999999999998 66888999998886543111000  00000  000      01


Q ss_pred             ccceeeeCC----------CCcC-----cc---hhHHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEE
Q 025758           91 SANHVELSP----------SDAG-----FQ---DRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLV  135 (248)
Q Consensus        91 ~~~~~~~~~----------~~~~-----~~---~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~vii  135 (248)
                      +.+++.+..          ....     ..   ....+.+.++.     .....+..+|+            ..+|++++
T Consensus        97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  176 (255)
T PRK11300         97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM  176 (255)
T ss_pred             HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            111111100          0000     00   00112222222     12223334442            45899999


Q ss_pred             EeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          136 LNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       136 iDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +||| ..+|+.....+.++|.+..+  +..+|++||+.. ....+.+|+..+
T Consensus       177 lDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l  227 (255)
T PRK11300        177 LDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVV  227 (255)
T ss_pred             EcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            9999 89999999999999988744  456777777655 444667777544

>smart00763 AAA_PrkA PrkA AAA domain

Probab=99.29  E-value=2.5e-10  Score=95.78  Aligned_cols=93  Identities=15%  Similarity=0.120  Sum_probs=65.7

Q ss_pred             CCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC-----------CeeEEEEecCC-------CcccHHHhhhhheeeecCC
Q 025758          128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-----------SCRLILCCNSS-------SKVTEAIRSRCLNIRINSP  189 (248)
Q Consensus       128 ~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~-----------~~~~Il~t~~~-------~~~~~~l~sR~~~i~~~~~  189 (248)
                      ..+..++-++|+...+....+.|+.++++..-           +..||.+||..       .+..+++++||..+.++.+
T Consensus       234 ~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~  313 (361)
T smart00763      234 RANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYC  313 (361)
T ss_pred             cccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCc
Confidence            45667899999999999999999999986421           12244455544       2578999999998888776


Q ss_pred             C-HHHHHHHHHHHHHHc---CCCCCHHHHHHHHHH
Q 025758          190 T-EEQIVKVLEFIAKKE---GLQLPSGFATRLAEK  220 (248)
Q Consensus       190 ~-~~~~~~il~~~~~~~---~~~~~~~~~~~l~~~  220 (248)
                      . ..+-.+|.++.+...   +..+.+-+++.++..
T Consensus       314 l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~  348 (361)
T smart00763      314 LRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF  348 (361)
T ss_pred             CCHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence            5 566777777776643   444566666665543

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=3.7e-12  Score=104.84  Aligned_cols=161  Identities=14%  Similarity=0.141  Sum_probs=91.5

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc---ccccceeeec------
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTTLS------   90 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------   90 (248)
                      .+.+.+...+..|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++.......   .....+....      
T Consensus        15 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~   91 (271)
T PRK13638         15 PVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSG-LLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF   91 (271)
T ss_pred             ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcC-CCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence            34555555555553  367999999999999999998 67888999999887653110000   0000000000      


Q ss_pred             ---ccceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           91 ---SANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        91 ---~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                         ..+++.+.....+....   ..+.+.++.+     .......+|+            ..+|+++++||| ..||+..
T Consensus        92 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~  171 (271)
T PRK13638         92 YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG  171 (271)
T ss_pred             cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence               00011110000011110   1112222221     1222334442            458999999999 8999999


Q ss_pred             HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+.+.+.+... +..+|++|++... ...+.+|+.++
T Consensus       172 ~~~l~~~l~~~~~~g~tii~vtH~~~~-~~~~~d~i~~l  209 (271)
T PRK13638        172 RTQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVL  209 (271)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            9999999988743 4567777776554 45667777443

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.28  E-value=1.5e-12  Score=116.32  Aligned_cols=162  Identities=11%  Similarity=0.199  Sum_probs=91.2

Q ss_pred             ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--ccccce--e-----
Q 025758           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLEL--T-----   87 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~-----   87 (248)
                      +...+++.+...+..|.  .+.|.||||+|||||++++++ +..+..|.+.++|..+....+..  .....+  +     
T Consensus        22 ~~~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~   98 (510)
T PRK15439         22 SGVEVLKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAG-IVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLF   98 (510)
T ss_pred             CCceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccC
Confidence            33344555555565554  366999999999999999998 66788899988886543111000  000000  0     


Q ss_pred             -eecccceeeeCCCCcCcchhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758           88 -TLSSANHVELSPSDAGFQDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (248)
Q Consensus        88 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (248)
                       ..++.+++.+..... ......+.+.++.+.     ......+|+            ..+|+++++||| ..||+....
T Consensus        99 ~~~tv~e~l~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~  177 (510)
T PRK15439         99 PNLSVKENILFGLPKR-QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETE  177 (510)
T ss_pred             CCCcHHHHhhcccccc-hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHH
Confidence             001111111111000 000111222222211     111223332            448999999999 899999999


Q ss_pred             HHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758          149 SLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       149 ~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+.++|.+.... ..+|++||+... ...+.+|+.+
T Consensus       178 ~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~i~~  212 (510)
T PRK15439        178 RLFSRIRELLAQGVGIVFISHKLPE-IRQLADRISV  212 (510)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            999999887443 456666666554 4467777643

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=1e-11  Score=102.49  Aligned_cols=159  Identities=15%  Similarity=0.242  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--e-------eec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--T-------TLS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-------~~~   90 (248)
                      +++.+...+..|.  .+.|.||||+||||+++++++ +..+.+|.+.++|..+....... ......  +       ..+
T Consensus        19 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t   95 (277)
T PRK13652         19 ALNNINFIAPRNS--RIAVIGPNGAGKSTLFRHFNG-ILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT   95 (277)
T ss_pred             eeeEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence            4445555555543  367999999999999999998 67889999999886543111000 000000  0       001


Q ss_pred             ccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           91 SANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      +.+++.+.....+....   ..+.+.++.     .....+..+|+            ..+|+++|+||| ..||+.....
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~  175 (277)
T PRK13652         96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE  175 (277)
T ss_pred             HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            11111111000011110   112222222     11223334442            458999999999 7999999999


Q ss_pred             HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +++++.+...  +..+|++|++.+. ...+.+|+.+
T Consensus       176 l~~~l~~l~~~~g~tvli~tH~~~~-~~~~~drv~~  210 (277)
T PRK13652        176 LIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYV  210 (277)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEE
Confidence            9999987754  4567777777554 4457778743

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.28  E-value=3.3e-11  Score=91.07  Aligned_cols=123  Identities=15%  Similarity=0.230  Sum_probs=76.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (248)
                      .+.|.||||+||||+++++++ +..+..|.+.+++........          ......+.+.+.   .+..+..+-.+.
T Consensus        27 ~~~i~G~nGsGKStll~~l~g-~~~~~~G~i~~~~~~~~~~~~----------~~~~~~i~~~~q---lS~G~~~r~~l~   92 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAG-LLKPTSGEILIDGKDIAKLPL----------EELRRRIGYVPQ---LSGGQRQRVALA   92 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCccEEEECCEEcccCCH----------HHHHhceEEEee---CCHHHHHHHHHH
Confidence            477999999999999999998 556788888888754331000          001112333332   222222222222


Q ss_pred             HHHhcCCCcCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh
Q 025758          116 EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       116 ~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      ...         ..+++++++||| ..+|......+.+.+.+.... ..++++||+...+. .+.+++.
T Consensus        93 ~~l---------~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~~d~i~  151 (157)
T cd00267          93 RAL---------LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE-LAADRVI  151 (157)
T ss_pred             HHH---------hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEE
Confidence            221         125789999999 799999999999999876443 45677766654433 4444443

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.28  E-value=5.2e-12  Score=99.21  Aligned_cols=141  Identities=21%  Similarity=0.254  Sum_probs=80.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee---eccCCcccccceeeecccceeeeCCCCcCcchh---HH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK---IDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---YV  109 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  109 (248)
                      .+-|.|+||+|||||.+++|+ +..|+.|.+.+.|+...   ...+-+.      ..+..+++.+...-.|....   ..
T Consensus        55 ~vGiiG~NGaGKSTLlkliaG-i~~Pt~G~v~v~G~v~~li~lg~Gf~p------elTGreNi~l~~~~~G~~~~ei~~~  127 (249)
T COG1134          55 RVGIIGHNGAGKSTLLKLIAG-IYKPTSGKVKVTGKVAPLIELGAGFDP------ELTGRENIYLRGLILGLTRKEIDEK  127 (249)
T ss_pred             EEEEECCCCCcHHHHHHHHhC-ccCCCCceEEEcceEehhhhcccCCCc------ccchHHHHHHHHHHhCccHHHHHHH
Confidence            367999999999999999998 78999999999886332   0000000      00001111111111111110   11


Q ss_pred             HHHHHHHHHhc---C-------CC--------cCCCCCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh-cCCeeEEEEecC
Q 025758          110 VQEVIKEMAKN---R-------PI--------DTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNS  169 (248)
Q Consensus       110 ~~~~~~~~~~~---~-------~~--------~~~~~~~~~viiiDE~-d~l~~~~~~~ll~~le~~-~~~~~~Il~t~~  169 (248)
                      ..+ +..+++.   .       +.        +.+-..+|.++||||+ ..-|..-+..-.+.+++. .++..+|++||+
T Consensus       128 ~~e-IieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd  206 (249)
T COG1134         128 VDE-IIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD  206 (249)
T ss_pred             HHH-HHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence            111 1111111   1       10        1111458999999998 777888888888888877 555666666666


Q ss_pred             CCcccHHHhhhhheee
Q 025758          170 SSKVTEAIRSRCLNIR  185 (248)
Q Consensus       170 ~~~~~~~l~sR~~~i~  185 (248)
                       ......+++|+..+.
T Consensus       207 -~~~I~~~Cd~~i~l~  221 (249)
T COG1134         207 -LGAIKQYCDRAIWLE  221 (249)
T ss_pred             -HHHHHHhcCeeEEEe
Confidence             445558888885443

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=8.3e-12  Score=103.33  Aligned_cols=159  Identities=14%  Similarity=0.257  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCc---ccceecccceeeccCCc---ccccce-------e
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA---EKVKVENKTWKIDAGSR---NIDLEL-------T   87 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~-------~   87 (248)
                      +.+.+...+..|.  .+.|.||||+||||+++++++ +..+..   |.+.++|.++.......   ...+-.       .
T Consensus        22 ~l~~v~l~i~~Ge--~~~I~G~nGaGKSTLl~~l~G-~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~   98 (282)
T PRK13640         22 ALNDISFSIPRGS--WTALIGHNGSGKSTISKLING-LLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFV   98 (282)
T ss_pred             ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhc-ccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhc
Confidence            4444444444443  367999999999999999999 555655   78888887553111000   000000       0


Q ss_pred             eecccceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           88 TLSSANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      ..++.+++.+.....+....   ..+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..
T Consensus        99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~  178 (282)
T PRK13640         99 GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG  178 (282)
T ss_pred             cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence            11122222221111111111   1122222221     2223334442            458999999999 8999999


Q ss_pred             HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+.+++.+...  +..+|++|++...+ . +.+|+.++
T Consensus       179 ~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~-~~d~i~~l  216 (282)
T PRK13640        179 KEQILKLIRKLKKKNNLTVISITHDIDEA-N-MADQVLVL  216 (282)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence            9999999988743  46788888887765 3 57777443

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=2e-11  Score=103.58  Aligned_cols=204  Identities=18%  Similarity=0.169  Sum_probs=124.9

Q ss_pred             ccccccHHHHHHHHHHh----hcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcc--cceecccceeeccCCcccccce
Q 025758           13 DQVIVHQDIAQNLKKLV----TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNIDLEL   86 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~----~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   86 (248)
                      ..+.|.+.-...+..|+    .......+.+.|.||+|||.+...+-..+.+....  .+.+++..+.            
T Consensus       150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~------------  217 (529)
T KOG2227|consen  150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT------------  217 (529)
T ss_pred             CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc------------
Confidence            44566666555555554    33444459999999999999999777655443322  1222221110            


Q ss_pred             eeecccceeeeCC---CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-CC--
Q 025758           87 TTLSSANHVELSP---SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-AS--  160 (248)
Q Consensus        87 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-~~--  160 (248)
                       ... .-+..+..   .+....+  +..+.+..+......    ....-|+++||.|+|....+..|+.+++.+. .+  
T Consensus       218 -~~~-aiF~kI~~~~~q~~~s~~--~~~~~~~~~~~h~~q----~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr  289 (529)
T KOG2227|consen  218 -EAS-AIFKKIFSSLLQDLVSPG--TGMQHLEKFEKHTKQ----SKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSR  289 (529)
T ss_pred             -chH-HHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHhc----ccceEEEEechhhHHhhcccceeeeehhcccCCcce
Confidence             000 00000000   0000000  012223333332221    2256799999999999888888888888652 22  


Q ss_pred             eeEEEEecCCC---cccHHHhhhh----heeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH---ccccHHHHH
Q 025758          161 CRLILCCNSSS---KVTEAIRSRC----LNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEK---SNRSLRRAI  229 (248)
Q Consensus       161 ~~~Il~t~~~~---~~~~~l~sR~----~~i~~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~l~~~---~~g~~r~~~  229 (248)
                      ...|.++|..+   .+++.|..|+    .++.|+||+.+++..|++.++..+..... +.+++.+++.   ..||+|.|+
T Consensus       290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaL  369 (529)
T KOG2227|consen  290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKAL  369 (529)
T ss_pred             eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHH
Confidence            34455566653   6888888876    58999999999999999999988766533 4467777744   479999999


Q ss_pred             HHHHHHh
Q 025758          230 LSFETCR  236 (248)
Q Consensus       230 ~~l~~~~  236 (248)
                      .+++.+.
T Consensus       370 dv~R~ai  376 (529)
T KOG2227|consen  370 DVCRRAI  376 (529)
T ss_pred             HHHHHHH
Confidence            9998443

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=3.8e-11  Score=110.42  Aligned_cols=129  Identities=21%  Similarity=0.387  Sum_probs=90.4

Q ss_pred             cccccHHHHHHHHHHhhcC-----C--CCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758           14 QVIVHQDIAQNLKKLVTEQ-----D--CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~~~-----~--~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (248)
                      .++||++++..+...+...     +  ... ++|.||.|+|||-+|+++|..++.....-++++...|..          
T Consensus       563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e----------  632 (898)
T KOG1051|consen  563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE----------  632 (898)
T ss_pred             hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh----------
Confidence            4689999999998887422     1  233 999999999999999999999988887777777754441          


Q ss_pred             eeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-------
Q 025758           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------  158 (248)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-------  158 (248)
                           +...++-.+...|...   .. .+.....        ...+.||++||+|..++..++.|++++++..       
T Consensus       633 -----vskligsp~gyvG~e~---gg-~Lteavr--------rrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr  695 (898)
T KOG1051|consen  633 -----VSKLIGSPPGYVGKEE---GG-QLTEAVK--------RRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGR  695 (898)
T ss_pred             -----hhhccCCCcccccchh---HH-HHHHHHh--------cCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCc
Confidence                 1111222222222222   12 2333333        3356799999999999999999999999753       


Q ss_pred             ----CCeeEEEEecC
Q 025758          159 ----ASCRLILCCNS  169 (248)
Q Consensus       159 ----~~~~~Il~t~~  169 (248)
                          +|+.||+|+|.
T Consensus       696 ~Vd~kN~I~IMTsn~  710 (898)
T KOG1051|consen  696 EVDFKNAIFIMTSNV  710 (898)
T ss_pred             EeeccceEEEEeccc
Confidence                45678888775

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.27  E-value=7.6e-12  Score=102.86  Aligned_cols=153  Identities=19%  Similarity=0.274  Sum_probs=89.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-Cccccccee-------eeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELT-------TLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~   92 (248)
                      +++.+...+.+|.  .+.|.||+|+||||+++++++.+ . ..|.+.++|.++..... .......+.       ..+..
T Consensus        19 ~l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~-~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~   94 (275)
T cd03289          19 VLENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLL-N-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFR   94 (275)
T ss_pred             ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHH
Confidence            4555565665554  36699999999999999999944 4 67999998865431100 000000000       00111


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH-----HHhcCCCc-----------CCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNRPID-----------TKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----------~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++...    +......+.+.++.     .....+..           ++.            ..+++++++||+ ..+|
T Consensus        95 ~nl~~~----~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD  170 (275)
T cd03289          95 KNLDPY----GKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD  170 (275)
T ss_pred             HHhhhc----cCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence            111100    00111112222211     12222222           332            458999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +.....+.+.+.+...+..+|++|++.+.+. . .+|+.+
T Consensus       171 ~~~~~~l~~~l~~~~~~~tii~isH~~~~i~-~-~dri~v  208 (275)
T cd03289         171 PITYQVIRKTLKQAFADCTVILSEHRIEAML-E-CQRFLV  208 (275)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEECCHHHHH-h-CCEEEE
Confidence            9999999999987665678889999886553 3 677743

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.27  E-value=2.9e-11  Score=98.97  Aligned_cols=142  Identities=13%  Similarity=0.141  Sum_probs=79.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc-eeeccCCcccccceeeecccceeeeCCCCcCcchhH---HHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY---VVQ  111 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  111 (248)
                      .+.|.||||+||||+++++++ +..+..|.+.+++.. +.......     ....+..+++.+.....+.....   ...
T Consensus        52 ~~~liG~NGsGKSTLlk~L~G-l~~p~~G~I~~~g~~~~~~~~~~~-----~~~~tv~enl~~~~~~~~~~~~~~~~~~~  125 (264)
T PRK13546         52 VIGLVGINGSGKSTLSNIIGG-SLSPTVGKVDRNGEVSVIAISAGL-----SGQLTGIENIEFKMLCMGFKRKEIKAMTP  125 (264)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCEEeEEecccCC-----CCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            378999999999999999998 668888988887742 11000000     00001111111100000111000   011


Q ss_pred             HHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCc
Q 025758          112 EVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSK  172 (248)
Q Consensus       112 ~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~  172 (248)
                      ..++.     ........+|+            ..+|+++++||| ..||+.....+++.+.+... +..+|++|++.. 
T Consensus       126 ~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-  204 (264)
T PRK13546        126 KIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-  204 (264)
T ss_pred             HHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-
Confidence            11111     11112223332            448899999999 79999999999999987744 345666666644 


Q ss_pred             ccHHHhhhhhee
Q 025758          173 VTEAIRSRCLNI  184 (248)
Q Consensus       173 ~~~~l~sR~~~i  184 (248)
                      ..+.+.+|+..+
T Consensus       205 ~i~~~~d~i~~l  216 (264)
T PRK13546        205 QVRQFCTKIAWI  216 (264)
T ss_pred             HHHHHcCEEEEE
Confidence            445667777443

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.27  E-value=2.3e-11  Score=99.38  Aligned_cols=161  Identities=13%  Similarity=0.203  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc-c-cce-eeecccceeee
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-D-LEL-TTLSSANHVEL   97 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~   97 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.+++..+......... . ... ........+.+
T Consensus        20 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   96 (257)
T PRK10619         20 VLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINF-LEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM   96 (257)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE
Confidence            3444444444443  467999999999999999998 6678889998888654310000000 0 000 00000001111


Q ss_pred             CCCCcCc--------------------ch---hHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEE
Q 025758           98 SPSDAGF--------------------QD---RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVL  136 (248)
Q Consensus        98 ~~~~~~~--------------------~~---~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viii  136 (248)
                      .+.....                    ..   ...+.++++.+.      ......+|+            ..+|+++++
T Consensus        97 v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  176 (257)
T PRK10619         97 VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF  176 (257)
T ss_pred             EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            1111100                    00   011222232221      111223332            458999999


Q ss_pred             eCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhheee
Q 025758          137 NEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       137 DE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ||| ..||+.....+.+++.+... +..+|++||+.. ..+.+.+|+.++.
T Consensus       177 DEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~  226 (257)
T PRK10619        177 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH  226 (257)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence            999 89999999999999988754 456677767654 4557778875543

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.27  E-value=2.3e-11  Score=95.55  Aligned_cols=161  Identities=19%  Similarity=0.250  Sum_probs=94.7

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--Ccccccce---------
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--SRNIDLEL---------   86 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------   86 (248)
                      .+.+++.|...++.|  .|+.++||||+|||||++.+++.. -+.++.+.+.|+.+.....  +.++.+.+         
T Consensus        43 gk~iL~~isW~V~~g--e~W~I~G~NGsGKTTLL~ll~~~~-~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~  119 (257)
T COG1119          43 GKKILGDLSWQVNPG--EHWAIVGPNGAGKTTLLSLLTGEH-PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERF  119 (257)
T ss_pred             CEeeccccceeecCC--CcEEEECCCCCCHHHHHHHHhccc-CCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhc
Confidence            444566666666555  368899999999999999999854 6668888887776541111  00000000         


Q ss_pred             -------eeeccc--ceeeeCCCCcCcchhHHHHHHHHHHHhc-----CCCcCC-C-----------CCCeeEEEEeCC-
Q 025758           87 -------TTLSSA--NHVELSPSDAGFQDRYVVQEVIKEMAKN-----RPIDTK-G-----------KRGFKVLVLNEV-  139 (248)
Q Consensus        87 -------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~-----------~~~~~viiiDE~-  139 (248)
                             +.+..+  ..+++............+..+++.+...     +-..+| +           ..+|.++||||+ 
T Consensus       120 ~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~  199 (257)
T COG1119         120 RVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA  199 (257)
T ss_pred             ccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc
Confidence                   000000  0011111111111112223333322211     111222 1           448999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcC---CeeEEEEecCCCcccHHHhhhh
Q 025758          140 DKLSREAQHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~---~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ++||..+...|++.+++...   ...+|++|++.+++++-+-.+.
T Consensus       200 ~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l  244 (257)
T COG1119         200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL  244 (257)
T ss_pred             ccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence            99999999999999988643   3579999999999988774443

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.27  E-value=3.9e-12  Score=108.95  Aligned_cols=139  Identities=20%  Similarity=0.318  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeC
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (248)
                      +.+++.+...++.|..-  -+.||+||||||++|.+.+ +-.+.+|.+++||.++.          .+..-.-..+++|.
T Consensus       349 ~pil~~isF~l~~G~~l--gIIGPSgSGKSTLaR~lvG-~w~p~~G~VRLDga~l~----------qWd~e~lG~hiGYL  415 (580)
T COG4618         349 KPILKGISFALQAGEAL--GIIGPSGSGKSTLARLLVG-IWPPTSGSVRLDGADLR----------QWDREQLGRHIGYL  415 (580)
T ss_pred             CcceecceeEecCCceE--EEECCCCccHHHHHHHHHc-ccccCCCcEEecchhhh----------cCCHHHhccccCcC
Confidence            34666777777776544  4999999999999999998 77999999999997554          23333345678888


Q ss_pred             CCCcCcchhHHHHHHHHHHHhc---------------------CCC-----------cCCC------------CCCeeEE
Q 025758           99 PSDAGFQDRYVVQEVIKEMAKN---------------------RPI-----------DTKG------------KRGFKVL  134 (248)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-----------~~~~------------~~~~~vi  134 (248)
                      |.+-...+.- +.+.+..+...                     .|.           .+|+            -++|.++
T Consensus       416 PQdVeLF~GT-IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv  494 (580)
T COG4618         416 PQDVELFDGT-IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV  494 (580)
T ss_pred             cccceecCCc-HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE
Confidence            8766554332 22222222210                     011           2221            4589999


Q ss_pred             EEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCC
Q 025758          135 VLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS  171 (248)
Q Consensus       135 iiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~  171 (248)
                      ++||+ ..||.+...+|...|..... .+++|+++|.+.
T Consensus       495 VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs  533 (580)
T COG4618         495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS  533 (580)
T ss_pred             EecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            99999 69999999999999977644 467888888865

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=8.1e-12  Score=102.70  Aligned_cols=162  Identities=14%  Similarity=0.176  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc----CCCcccceecccceeeccCC---cccccceeee---
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF----GPGAEKVKVENKTWKIDAGS---RNIDLELTTL---   89 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---   89 (248)
                      .+++.+...+.+|.  .+.|.||||+||||+++++++.+.    .+..|.+.++|.++......   ......+..-   
T Consensus        35 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  112 (268)
T PRK14248         35 RAVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN  112 (268)
T ss_pred             eeeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence            34455555555543  367999999999999999999432    15788898888654311000   0000000000   


Q ss_pred             ----cccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           90 ----SSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        90 ----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                          +..+++.+.........    ...+.+.+..+         .......+|+            ..+|+++|+||| 
T Consensus       113 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt  192 (268)
T PRK14248        113 PFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA  192 (268)
T ss_pred             cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence                00011110000000000    01112222111         1122333442            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..||+.....+.+++.+......+|++|++... ...+.+|+..+
T Consensus       193 ~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~-~~~~~d~v~~l  236 (268)
T PRK14248        193 SALDPISNAKIEELITELKEEYSIIIVTHNMQQ-ALRVSDRTAFF  236 (268)
T ss_pred             cccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHH-HHHhCCEEEEE
Confidence            899999999999999887555667777777554 44666776443

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.27  E-value=8e-12  Score=101.88  Aligned_cols=163  Identities=13%  Similarity=0.162  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc--C--CCcccceecccceeeccCC--c-ccccceeee---
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--G--PGAEKVKVENKTWKIDAGS--R-NIDLELTTL---   89 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~--~--~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~---   89 (248)
                      .+++.+...+.+|.  .+.|.||||+||||+++++++.+.  .  +..|.+.++|.+.......  . .....+..-   
T Consensus        20 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~   97 (253)
T PRK14242         20 QALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN   97 (253)
T ss_pred             eeecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence            34555555555553  367999999999999999998432  1  4678898888654310000  0 000000000   


Q ss_pred             ----cccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           90 ----SSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        90 ----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                          +..+++.+.....+...    ...+.+.++.+         .......+|+            ..+|+++++||| 
T Consensus        98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt  177 (253)
T PRK14242         98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA  177 (253)
T ss_pred             CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                01111111000000000    11112222221         1112233442            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ..||+.....+.+.+.+...+..+|++||+... ...+.+|+..+.
T Consensus       178 ~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~-~~~~~d~v~~l~  222 (253)
T PRK14242        178 SALDPIATQKIEELIHELKARYTIIIVTHNMQQ-AARVSDVTAFFY  222 (253)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH-HHHhCCEEEEEE
Confidence            899999999999999987555566777776554 446667775443

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.27  E-value=2.2e-11  Score=97.89  Aligned_cols=146  Identities=17%  Similarity=0.241  Sum_probs=82.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCC----CcccceecccceeeccCCcccccceeeecc----------cceeeeCCCC
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGP----GAEKVKVENKTWKIDAGSRNIDLELTTLSS----------ANHVELSPSD  101 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  101 (248)
                      .+.|.||||+||||+++++++ +..+    .+|.+.++|.++... ...........-..          .+++.+....
T Consensus        14 ~~~i~G~nGsGKSTLl~~l~G-l~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~   91 (230)
T TIGR02770        14 VLALVGESGSGKSLTCLAILG-LLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRS   91 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhc-CCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCcccCHHHHHHHHHHH
Confidence            377999999999999999998 5566    789999888755311 00000000000000          0000000000


Q ss_pred             cCcch---hHHHHHHHHHHH--------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh
Q 025758          102 AGFQD---RYVVQEVIKEMA--------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY  157 (248)
Q Consensus       102 ~~~~~---~~~~~~~~~~~~--------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~  157 (248)
                      .+...   ...+.+.++.+.        ......+|+            ..+|+++++||| ..||......+.+.+.+.
T Consensus        92 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~  171 (230)
T TIGR02770        92 LGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL  171 (230)
T ss_pred             cCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence            00000   111222232221        112223332            448899999999 799999999999999887


Q ss_pred             cC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          158 SA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       158 ~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..  +..+|++|++.+ ....+.+|+..+
T Consensus       172 ~~~~~~tiii~sH~~~-~~~~~~d~i~~l  199 (230)
T TIGR02770       172 RQLFGTGILLITHDLG-VVARIADEVAVM  199 (230)
T ss_pred             HHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            53  456777777655 455666777444

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=7.1e-12  Score=102.05  Aligned_cols=162  Identities=17%  Similarity=0.231  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeecc-C--Ccccccceee---
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDA-G--SRNIDLELTT---   88 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~---   88 (248)
                      .+.+.+...+..|.  .+.|.||||+||||+++++++ +..     +..|.+.++|.++.... .  ..........   
T Consensus        18 ~~l~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~   94 (251)
T PRK14251         18 EALHGISLDFEEKE--LTALIGPSGCGKSTFLRCLNR-MNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP   94 (251)
T ss_pred             eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhh-ccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCC
Confidence            34455555555543  367999999999999999999 444     36888888886543100 0  0000000000   


Q ss_pred             ----ecccceeeeCCCCcCcchh----HHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC
Q 025758           89 ----LSSANHVELSPSDAGFQDR----YVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV  139 (248)
Q Consensus        89 ----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~  139 (248)
                          .+..+++.+.....+....    ..+.+.++.+         .......+|+            ..+|+++++|||
T Consensus        95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP  174 (251)
T PRK14251         95 TPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEP  174 (251)
T ss_pred             ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence                0111111110000000000    1112222221         1112223332            458999999999


Q ss_pred             -CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758          140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       140 -d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                       ..||+.....+.+.+++......+|++|++... ...+.+|+..+.
T Consensus       175 ~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~-~~~~~d~i~~l~  220 (251)
T PRK14251        175 TSALDPISSSEIEETLMELKHQYTFIMVTHNLQQ-AGRISDQTAFLM  220 (251)
T ss_pred             CccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHH-HHhhcCEEEEEE
Confidence             899999999999999987655677777777654 345567775443

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.26  E-value=5.7e-12  Score=100.57  Aligned_cols=142  Identities=16%  Similarity=0.272  Sum_probs=93.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHH---
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV---  113 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  113 (248)
                      .-++|++|+||||++++||+ +..++.|.+.++|..+.......+.      -.....++|...+....+.++++..   
T Consensus        27 TAlFG~SGsGKTslin~IaG-L~rPdeG~I~lngr~L~Ds~k~i~l------p~~~RriGYVFQDARLFpH~tVrgNL~Y   99 (352)
T COG4148          27 TALFGPSGSGKTSLINMIAG-LTRPDEGRIELNGRVLVDAEKGIFL------PPEKRRIGYVFQDARLFPHYTVRGNLRY   99 (352)
T ss_pred             EEEecCCCCChhhHHHHHhc-cCCccccEEEECCEEeecccCCccc------ChhhheeeeEeeccccccceEEecchhh
Confidence            44999999999999999998 8899999999999866511111000      0001123333333332222221111   


Q ss_pred             ------------------HHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC--
Q 025758          114 ------------------IKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS--  160 (248)
Q Consensus       114 ------------------~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~--  160 (248)
                                        +..+...+|..+|+            ...|.++++||+ ..+|......++..+|...+.  
T Consensus       100 G~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~  179 (352)
T COG4148         100 GMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN  179 (352)
T ss_pred             hhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcC
Confidence                              33345556777774            347999999999 889999999999999988654  


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeee
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRI  186 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~  186 (248)
                      .+++..||...++. .+.+|..++.-
T Consensus       180 IPIlYVSHS~~Ev~-RLAd~vV~le~  204 (352)
T COG4148         180 IPILYVSHSLDEVL-RLADRVVVLEN  204 (352)
T ss_pred             CCEEEEecCHHHHH-hhhheEEEecC
Confidence            57888888776655 66677654433

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.26  E-value=7.2e-12  Score=103.93  Aligned_cols=160  Identities=18%  Similarity=0.305  Sum_probs=92.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-----Cc--ccccceee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-----SR--NIDLELTT-----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~-----   88 (248)
                      +++.+...+.+|..  +.|.||||+|||||++++++ +..+.+|.+.++|.++.....     ..  ...+..+.     
T Consensus        22 ~l~~vsl~i~~Ge~--~~iiG~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~   98 (287)
T PRK13641         22 GLDNISFELEEGSF--VALVGHTGSGKSTLMQHFNA-LLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL   98 (287)
T ss_pred             ceeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhh
Confidence            45555555665543  66999999999999999998 778899999999976531100     00  00000000     


Q ss_pred             --ecccceeeeCCCCcCcchh---HHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758           89 --LSSANHVELSPSDAGFQDR---YVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (248)
Q Consensus        89 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (248)
                        .++.+++.+.....+....   ..+.+.++.+      .......+|+            ..+|+++++||| ..||+
T Consensus        99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~  178 (287)
T PRK13641         99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP  178 (287)
T ss_pred             ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence              0111111110000011000   1122222221      1122233442            448999999999 89999


Q ss_pred             HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .....+.+++.+... +..+|++||+.+ ....+.+|+..+
T Consensus       179 ~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l  218 (287)
T PRK13641        179 EGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVL  218 (287)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            999999999998754 356666666644 444777887544

>PRK08116 hypothetical protein; Validated

Probab=99.26  E-value=2.5e-11  Score=99.37  Aligned_cols=155  Identities=17%  Similarity=0.279  Sum_probs=87.6

Q ss_pred             ccCCCCCcccccc---cHHHHHHHHHHhhc----C-CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            5 DKYRPKTLDQVIV---HQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         5 ~ky~p~~~~~lig---~~~~~~~l~~~~~~----~-~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      ++|+-.||+++..   +..++.....++++    . ....++|+|++|+|||+||.+++..+.......+.+        
T Consensus        77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~--------  148 (268)
T PRK08116         77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV--------  148 (268)
T ss_pred             HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE--------
Confidence            4566678887753   33345555544432    1 223499999999999999999999874432110000        


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC--CCCCHHHHHHHHHHH
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTM  154 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~--d~l~~~~~~~ll~~l  154 (248)
                                   +....+................+.++.+           ...++|+|||+  +......+..|+.+|
T Consensus       149 -------------~~~~ll~~i~~~~~~~~~~~~~~~~~~l-----------~~~dlLviDDlg~e~~t~~~~~~l~~ii  204 (268)
T PRK08116        149 -------------NFPQLLNRIKSTYKSSGKEDENEIIRSL-----------VNADLLILDDLGAERDTEWAREKVYNII  204 (268)
T ss_pred             -------------EHHHHHHHHHHHHhccccccHHHHHHHh-----------cCCCEEEEecccCCCCCHHHHHHHHHHH
Confidence                         0000000000000000000111222222           24569999999  556677888899999


Q ss_pred             HHh-cCCeeEEEEecCCCc-----ccHHHhhh----hheeeecCCCH
Q 025758          155 EKY-SASCRLILCCNSSSK-----VTEAIRSR----CLNIRINSPTE  191 (248)
Q Consensus       155 e~~-~~~~~~Il~t~~~~~-----~~~~l~sR----~~~i~~~~~~~  191 (248)
                      +.. ..+..+|++||.+..     +...+.||    |..+.|..++.
T Consensus       205 n~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~  251 (268)
T PRK08116        205 DSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY  251 (268)
T ss_pred             HHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence            865 344578888887753     34567788    45677776663

>PRK12377 putative replication protein; Provisional

Probab=99.26  E-value=8e-11  Score=94.93  Aligned_cols=152  Identities=16%  Similarity=0.286  Sum_probs=85.9

Q ss_pred             ccCCCCCccccc----ccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758            5 DKYRPKTLDQVI----VHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (248)
Q Consensus         5 ~ky~p~~~~~li----g~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~   78 (248)
                      .+|+..+|+++.    |+..++.....++..  ....+++|+||+|||||++|.+++..+......              
T Consensus        66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~--------------  131 (248)
T PRK12377         66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRS--------------  131 (248)
T ss_pred             cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC--------------
Confidence            456777899886    344455555554432  223469999999999999999999987432211              


Q ss_pred             CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC--CCCCHHHHHHHHHHHHH
Q 025758           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTMEK  156 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~--d~l~~~~~~~ll~~le~  156 (248)
                             +...+.++.+......  ........+.++.           ....++|+|||+  ...+...+..|+.+++.
T Consensus       132 -------v~~i~~~~l~~~l~~~--~~~~~~~~~~l~~-----------l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~  191 (248)
T PRK12377        132 -------VIVVTVPDVMSRLHES--YDNGQSGEKFLQE-----------LCKVDLLVLDEIGIQRETKNEQVVLNQIIDR  191 (248)
T ss_pred             -------eEEEEHHHHHHHHHHH--HhccchHHHHHHH-----------hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence                   0000000000000000  0000001111221           236679999999  45567788899999987


Q ss_pred             hcC-CeeEEEEecCCCc-----ccHHHhhhhh-----eeeecCCC
Q 025758          157 YSA-SCRLILCCNSSSK-----VTEAIRSRCL-----NIRINSPT  190 (248)
Q Consensus       157 ~~~-~~~~Il~t~~~~~-----~~~~l~sR~~-----~i~~~~~~  190 (248)
                      .-. ...+|++||....     +.+.+.||..     .|.|.-.+
T Consensus       192 R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s  236 (248)
T PRK12377        192 RTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES  236 (248)
T ss_pred             HHhcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence            543 4678888887642     3345556652     35555433

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=2.9e-11  Score=98.19  Aligned_cols=160  Identities=14%  Similarity=0.195  Sum_probs=89.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc--CCCcccceecccceeeccCCcccccceeee---------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNIDLELTTL---------   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   89 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++.+.  .+..|.+.++|.++......... .....+         
T Consensus        17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~-~~i~~~~q~~~l~~~   93 (246)
T PRK14269         17 ALFDINMQIEQNK--ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR-KNVGMVFQQPNVFVK   93 (246)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh-hhEEEEecCCccccc
Confidence            4445544455443  477999999999999999998432  35789999888765311100000 000000         


Q ss_pred             cccceeeeCCCCcCc-----chhHHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758           90 SSANHVELSPSDAGF-----QDRYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d~l  142 (248)
                      +..+++.+.....+.     .....+.+.++.+.         ......+|+            ..+|+++++||| ..|
T Consensus        94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L  173 (246)
T PRK14269         94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL  173 (246)
T ss_pred             cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            111111111000000     00011222222211         112223442            458999999999 899


Q ss_pred             CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          143 SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       143 ~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      |+.....+.+.+.+...+..+|++|++.+.+ ..+.+|+.++
T Consensus       174 D~~~~~~l~~~l~~~~~~~tiii~tH~~~~~-~~~~d~i~~l  214 (246)
T PRK14269        174 DPISSGVIEELLKELSHNLSMIMVTHNMQQG-KRVADYTAFF  214 (246)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhhCcEEEEE
Confidence            9999999999998876556677777765544 4666776544

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=1.6e-10  Score=93.86  Aligned_cols=190  Identities=18%  Similarity=0.310  Sum_probs=112.0

Q ss_pred             cccHHHHHHHHHHh-------h----cCC----CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758           16 IVHQDIAQNLKKLV-------T----EQD----CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus        16 ig~~~~~~~l~~~~-------~----~~~----~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      +||+.+++.|.-.+       .    +..    -.++++.||+|||||.||+.+|+.+.-|           |+  ....
T Consensus        64 IGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVP-----------Fa--iADA  130 (408)
T COG1219          64 IGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVP-----------FA--IADA  130 (408)
T ss_pred             ecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCC-----------ee--eccc
Confidence            68888777654322       1    111    1259999999999999999999976322           21  0000


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------------HHH
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------------REA  146 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------------~~~  146 (248)
                      .      ++   -.-+|.        +++++.++..+.....+... +.+..+++|||+|.+.              ...
T Consensus       131 T------tL---TEAGYV--------GEDVENillkLlqaadydV~-rAerGIIyIDEIDKIarkSeN~SITRDVSGEGV  192 (408)
T COG1219         131 T------TL---TEAGYV--------GEDVENILLKLLQAADYDVE-RAERGIIYIDEIDKIARKSENPSITRDVSGEGV  192 (408)
T ss_pred             c------ch---hhcccc--------chhHHHHHHHHHHHcccCHH-HHhCCeEEEechhhhhccCCCCCcccccCchHH
Confidence            0      00   001222        23466666665554433222 4466799999999873              356


Q ss_pred             HHHHHHHHHHh-----cCCee--------------EEEEecCC-------------------------------------
Q 025758          147 QHSLRRTMEKY-----SASCR--------------LILCCNSS-------------------------------------  170 (248)
Q Consensus       147 ~~~ll~~le~~-----~~~~~--------------~Il~t~~~-------------------------------------  170 (248)
                      |.+|+|++|..     ++.++              ++|++.--                                     
T Consensus       193 QQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~  272 (408)
T COG1219         193 QQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLK  272 (408)
T ss_pred             HHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHH
Confidence            89999999853     11111              33333211                                     


Q ss_pred             ---------CcccHHHhhhh-heeeecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc---ccc
Q 025758          171 ---------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS---NRS  224 (248)
Q Consensus       171 ---------~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~-----------~~~~~~~--~~~~~~~~~l~~~~---~g~  224 (248)
                               ..+.|.+..|. .+..+..++.+.+..||..           .++-+++  .++++++..+++.+   ...
T Consensus       273 ~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTG  352 (408)
T COG1219         273 QVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTG  352 (408)
T ss_pred             hcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccc
Confidence                     12555666777 4677889999999888864           1222344  47799999998665   122


Q ss_pred             HHHHHHHHHHHh
Q 025758          225 LRRAILSFETCR  236 (248)
Q Consensus       225 ~r~~~~~l~~~~  236 (248)
                      +|.+-.+++.+.
T Consensus       353 ARGLRsI~E~~l  364 (408)
T COG1219         353 ARGLRSIIEELL  364 (408)
T ss_pred             hhHHHHHHHHHH
Confidence            555555555444

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=99.26  E-value=7.5e-10  Score=100.14  Aligned_cols=52  Identities=27%  Similarity=0.455  Sum_probs=46.3

Q ss_pred             CCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus         7 y~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      -.|..+++++||+++++.|...+..+  .+++|+||||+||||++++++..+.+
T Consensus        25 ~~~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~   76 (637)
T PRK13765         25 VPERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK   76 (637)
T ss_pred             cCcccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh
Confidence            35889999999999999999988876  37999999999999999999997644

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=99.26  E-value=5.7e-10  Score=101.06  Aligned_cols=109  Identities=18%  Similarity=0.204  Sum_probs=74.1

Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---------------------CCeeEEEEecCC--CcccHHHhhhhh---
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------------------ASCRLILCCNSS--SKVTEAIRSRCL---  182 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~---------------------~~~~~Il~t~~~--~~~~~~l~sR~~---  182 (248)
                      .+..+++|||++.|++..+..|++.+++..                     .+.++|++++..  ..+.+++++|+.   
T Consensus       216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~  295 (608)
T TIGR00764       216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG  295 (608)
T ss_pred             CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence            356789999999999999999999997531                     134577777654  478899999986   


Q ss_pred             -eeeecC---CCHHHHHH---HHHHHHHHcC-C-CCCHHHHHHHHHHcc----------ccHHHHHHHHHHHhh
Q 025758          183 -NIRINS---PTEEQIVK---VLEFIAKKEG-L-QLPSGFATRLAEKSN----------RSLRRAILSFETCRV  237 (248)
Q Consensus       183 -~i~~~~---~~~~~~~~---il~~~~~~~~-~-~~~~~~~~~l~~~~~----------g~~r~~~~~l~~~~~  237 (248)
                       .+.|+.   .+.+...+   .+...+.+.| + .++++.++.+++.+.          .+.|++-++++.+..
T Consensus       296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~  369 (608)
T TIGR00764       296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGD  369 (608)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHH
Confidence             244432   34444443   4444444442 3 478999999985432          347888888877743

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.26  E-value=3.4e-11  Score=97.96  Aligned_cols=154  Identities=19%  Similarity=0.294  Sum_probs=85.6

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc-eeeccCCcccccceeeecccceeeeCCC
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      .+.+...+..|.  .+.|.||||+||||+++++++ +..+.+|.+.+++.. +.+..........+. .....++.+.+ 
T Consensus        20 l~~vs~~i~~Ge--~~~I~G~NGsGKSTLl~~i~G-l~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~-~~~~~~~~~~~-   94 (251)
T PRK09544         20 LSDVSLELKPGK--ILTLLGPNGAGKSTLVRVVLG-LVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP-LTVNRFLRLRP-   94 (251)
T ss_pred             EEeEEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCccCEEEeccccccccccC-hhHHHHHhccc-
Confidence            333344444443  367999999999999999998 668888888776531 111111000000000 00011111110 


Q ss_pred             CcCcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--C
Q 025758          101 DAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--S  160 (248)
Q Consensus       101 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~  160 (248)
                        +. ....+.+.++.+     .......+|+            ..+|+++++||| ..+|+.....+.+.+.+...  +
T Consensus        95 --~~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g  171 (251)
T PRK09544         95 --GT-KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD  171 (251)
T ss_pred             --cc-cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcC
Confidence              00 011122223221     1222333442            458899999999 89999999999999987643  4


Q ss_pred             eeEEEEecCCCcccHHHhhhhhee
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|++|++.. ....+.+|+..+
T Consensus       172 ~tiiivsH~~~-~i~~~~d~i~~l  194 (251)
T PRK09544        172 CAVLMVSHDLH-LVMAKTDEVLCL  194 (251)
T ss_pred             CEEEEEecCHH-HHHHhCCEEEEE
Confidence            56777777755 444566776443

>PRK09862 putative ATP-dependent protease; Provisional

Probab=99.26  E-value=5e-11  Score=104.87  Aligned_cols=168  Identities=19%  Similarity=0.247  Sum_probs=101.0

Q ss_pred             CCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (248)
                      .+|.+++|+..+++.+...+..+  .+++|+||||+|||++++.+++ +..+..+...++...+...++....       
T Consensus       188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~g-llpp~~g~e~le~~~i~s~~g~~~~-------  257 (506)
T PRK09862        188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRING-LLPDLSNEEALESAAILSLVNAESV-------  257 (506)
T ss_pred             cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhc-cCCCCCCcEEEecchhhhhhccccc-------
Confidence            47888899999999887776554  4699999999999999999998 6677766665555433211111100       


Q ss_pred             cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----------
Q 025758           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------  158 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----------  158 (248)
                        ...+ ...+........+....+.--....+..+ ...+..+++|||++.+++..+..|++.+|+..           
T Consensus       258 --~~~~-~~rPfr~ph~~~s~~~l~GGg~~~~pG~l-~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~  333 (506)
T PRK09862        258 --QKQW-RQRPFRSPHHSASLTAMVGGGAIPGPGEI-SLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT  333 (506)
T ss_pred             --cCCc-CCCCccCCCccchHHHHhCCCceehhhHh-hhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCccee
Confidence              0000 00111111111111111110000111111 13455699999999999999999999997642           


Q ss_pred             --CCeeEEEEecCCC---------------------cccHHHhhhh-heeeecCCCH
Q 025758          159 --ASCRLILCCNSSS---------------------KVTEAIRSRC-LNIRINSPTE  191 (248)
Q Consensus       159 --~~~~~Il~t~~~~---------------------~~~~~l~sR~-~~i~~~~~~~  191 (248)
                        .+..+|.++|...                     .+..++.+|+ ..+.+++++.
T Consensus       334 ~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~  390 (506)
T PRK09862        334 YPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP  390 (506)
T ss_pred             ccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCH
Confidence              2234666666542                     3677999999 4677777643

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=1.6e-11  Score=99.98  Aligned_cols=160  Identities=15%  Similarity=0.206  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----CcccceecccceeeccCCc---ccccceee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDAGSR---NIDLELTT----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~----   88 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+     .+|.+.++|.++.......   .....+..    
T Consensus        19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~   95 (251)
T PRK14270         19 ALNDINLPIYENK--ITALIGPSGCGKSTFLRCLNR-MNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN   95 (251)
T ss_pred             eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHHh-ccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence            4445555555443  367999999999999999998 4332     6788888887553111000   00000000    


Q ss_pred             ---ecccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           89 ---LSSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                         .+..+++.+.....+...    ...+.+.++.+         .......+|+            ..+++++++||| 
T Consensus        96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~  175 (251)
T PRK14270         96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT  175 (251)
T ss_pred             cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence               011111111110001000    01112222222         1222333442            448999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|+.....+.+++.+......+|++|++.. ....+.+|+.++
T Consensus       176 ~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~-~~~~~~d~v~~l  219 (251)
T PRK14270        176 SALDPISTLKIEDLMVELKKEYTIVIVTHNMQ-QASRVSDYTAFF  219 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHH-HHHHhcCEEEEE
Confidence            89999999999999988765566777777654 445667787544

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=3.6e-11  Score=97.97  Aligned_cols=160  Identities=14%  Similarity=0.216  Sum_probs=88.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC--C---CcccceecccceeeccCCc---ccccceee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG--P---GAEKVKVENKTWKIDAGSR---NIDLELTT----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~--~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~----   88 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..  +   .+|.+.++|..........   ........    
T Consensus        19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~   95 (252)
T PRK14256         19 AVKDVSMDFPENS--VTAIIGPSGCGKSTVLRSINR-MHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN   95 (252)
T ss_pred             EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHHh-cccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence            4445554555443  377999999999999999999 433  2   4788888886543110000   00000000    


Q ss_pred             ----ecccceeeeCCCCcCcch----hHHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC
Q 025758           89 ----LSSANHVELSPSDAGFQD----RYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV  139 (248)
Q Consensus        89 ----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~  139 (248)
                          .+..+++.+.....+...    ...+.+.++.+.         ......+|+            ..+|+++++|||
T Consensus        96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  175 (252)
T PRK14256         96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP  175 (252)
T ss_pred             CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                000111111000001000    011222222221         112223442            458999999999


Q ss_pred             -CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 -d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                       ..||+.....+.+.+++......+|++||+.. ....+.+|+..+
T Consensus       176 ~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~-~~~~~~d~i~~l  220 (252)
T PRK14256        176 ASALDPISTLKIEELIEELKEKYTIIIVTHNMQ-QAARVSDYTAFF  220 (252)
T ss_pred             cccCCHHHHHHHHHHHHHHHhCCcEEEEECCHH-HHHhhCCEEEEE
Confidence             89999999999999998866666777777655 444677777544

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=1e-11  Score=103.19  Aligned_cols=160  Identities=16%  Similarity=0.263  Sum_probs=93.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc-C----C--cccccceee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-G----S--RNIDLELTT-----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~-~----~--~~~~~~~~~-----   88 (248)
                      +++.+...+..|.  .+.|.||||+||||+++++++ +..+.+|.+.++|+++.... .    .  ....+-++.     
T Consensus        22 ~L~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l   98 (290)
T PRK13634         22 ALYDVNVSIPSGS--YVAIIGHTGSGKSTLLQHLNG-LLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL   98 (290)
T ss_pred             ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence            4455555555554  366999999999999999998 67888999999987553100 0    0  000000100     


Q ss_pred             --ecccceeeeCCCCcCcchh---HHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758           89 --LSSANHVELSPSDAGFQDR---YVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (248)
Q Consensus        89 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (248)
                        .++.+++.+.....+....   ..+.+.++.+      ....+..+|+            ..+|+++|+||| ..||+
T Consensus        99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~  178 (290)
T PRK13634         99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP  178 (290)
T ss_pred             hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence              0111112111111111111   1122222221      1122333442            458999999999 89999


Q ss_pred             HHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       145 ~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .....+++++.+...  +..+|++|++.+. ...+.+|+.++
T Consensus       179 ~~~~~l~~~L~~l~~~~g~tviiitHd~~~-~~~~~drv~~l  219 (290)
T PRK13634        179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMED-AARYADQIVVM  219 (290)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            999999999988753  4567777777654 44667887544

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=8.3e-12  Score=104.25  Aligned_cols=159  Identities=16%  Similarity=0.218  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc-----------------------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-----------------------   77 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~-----------------------   77 (248)
                      +.+.+...+.+|.  .+.|.||||+|||||++++++ +..+..|.+.+++.......                       
T Consensus        22 ~l~~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (305)
T PRK13651         22 ALDNVSVEINQGE--FIAIIGQTGSGKTTFIEHLNA-LLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIK   98 (305)
T ss_pred             ceeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhC-CCCCCCcEEEEeceecccccccccccccccccccccccccccc
Confidence            4445555555543  467999999999999999999 67888899988765331000                       


Q ss_pred             --CCcc--cccceee-------ecccceeeeCCCCcCcchhH---HHHHHHHH------HHhcCCCcCCC----------
Q 025758           78 --GSRN--IDLELTT-------LSSANHVELSPSDAGFQDRY---VVQEVIKE------MAKNRPIDTKG----------  127 (248)
Q Consensus        78 --~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~----------  127 (248)
                        ....  ..+-++.       .++.+++.+.....+.....   .+.+.++.      .....+..+|+          
T Consensus        99 ~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~  178 (305)
T PRK13651         99 KIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAG  178 (305)
T ss_pred             hHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHH
Confidence              0000  0000000       01111111111111111111   12222222      11223334442          


Q ss_pred             --CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          128 --KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       128 --~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                        ..+|+++|+||| ..||+.....+++++.+... +..+|++|++.+.+. .+.+|+.+
T Consensus       179 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~-~~adrv~v  237 (305)
T PRK13651        179 ILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL-EWTKRTIF  237 (305)
T ss_pred             HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHH-HhCCEEEE
Confidence              448999999999 89999999999999988754 456777777755444 66677743

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.25  E-value=1e-11  Score=100.57  Aligned_cols=159  Identities=18%  Similarity=0.250  Sum_probs=104.6

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee-----------ccCCcccccce-e
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-----------DAGSRNIDLEL-T   87 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~   87 (248)
                      .+++.++-.++.|.+-+  +.|.+|+|||||+|++-. |..|++|.+-++|.++..           ..+..+.-+.+ .
T Consensus        20 ~al~~vsL~I~~GeI~G--IIG~SGAGKSTLiR~iN~-Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs   96 (339)
T COG1135          20 TALDDVSLEIPKGEIFG--IIGYSGAGKSTLLRLINL-LERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS   96 (339)
T ss_pred             eeeccceEEEcCCcEEE--EEcCCCCcHHHHHHHHhc-cCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc
Confidence            34555666666666555  999999999999999997 999999999999965431           11111111111 1


Q ss_pred             eecccceeeeCCCCcCcchhH---HHHHHHH-----HHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           88 TLSSANHVELSPSDAGFQDRY---VVQEVIK-----EMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      ...+.+++.|..+-.+.+..+   .+.++++     .-...+|.++|+            ..+|+|++-||+ ..|||..
T Consensus        97 srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~T  176 (339)
T COG1135          97 SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET  176 (339)
T ss_pred             cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHH
Confidence            122344455554444433222   2333332     234556777875            458999999999 8999999


Q ss_pred             HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      -..++.++.+...  +.+++++||+ .++...+++|+.
T Consensus       177 T~sIL~LL~~In~~lglTIvlITHE-m~Vvk~ic~rVa  213 (339)
T COG1135         177 TQSILELLKDINRELGLTIVLITHE-MEVVKRICDRVA  213 (339)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHhhhhe
Confidence            9998888887643  3467777655 677779999974

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=4.8e-12  Score=104.67  Aligned_cols=159  Identities=16%  Similarity=0.240  Sum_probs=93.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--Ccccccceeee---------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--SRNIDLELTTL---------   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------   89 (248)
                      +++.+...+..|.  .+.|.||||+||||+++++++ +..+..|.+.++|..+.....  .......+..-         
T Consensus        25 vl~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~  101 (280)
T PRK13633         25 ALDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNA-LLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT  101 (280)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence            5555555555553  366999999999999999998 668889999998875531100  00000000000         


Q ss_pred             cccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758           90 SSANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (248)
                      ...+.+.+.....+....   ..+.++++.     .....+..+|+            ..+|+++++||| ..||+..+.
T Consensus       102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~  181 (280)
T PRK13633        102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR  181 (280)
T ss_pred             cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            011111111111111111   112222222     12223334442            458999999999 899999999


Q ss_pred             HHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       149 ~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+.+.+.+..+  +..+|++|++.+.+. . .+|+.++
T Consensus       182 ~l~~~l~~l~~~~g~tillvtH~~~~~~-~-~d~v~~l  217 (280)
T PRK13633        182 EVVNTIKELNKKYGITIILITHYMEEAV-E-ADRIIVM  217 (280)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecChHHHh-c-CCEEEEE
Confidence            99999998743  467888888877653 3 6777443

>PRK07952 DNA replication protein DnaC; Validated

Probab=99.25  E-value=5.6e-11  Score=95.60  Aligned_cols=154  Identities=16%  Similarity=0.265  Sum_probs=86.9

Q ss_pred             cccCCCCCcccccc----cHHHHHHHHHHhhcC--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758            4 VDKYRPKTLDQVIV----HQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (248)
Q Consensus         4 ~~ky~p~~~~~lig----~~~~~~~l~~~~~~~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~   77 (248)
                      .++|++.+|+++..    +..++..+..++.+-  ...+++|+|++|+|||+++.+++.++...... +           
T Consensus        63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~-v-----------  130 (244)
T PRK07952         63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKS-V-----------  130 (244)
T ss_pred             CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCe-E-----------
Confidence            36788999999963    445667777766532  22469999999999999999999987432211 0           


Q ss_pred             CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHH
Q 025758           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTME  155 (248)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le  155 (248)
                               -.++..+.+........ ....+..+.++.+           ...++|+|||++...  ......|+.+++
T Consensus       131 ---------~~it~~~l~~~l~~~~~-~~~~~~~~~l~~l-----------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~  189 (244)
T PRK07952        131 ---------LIITVADIMSAMKDTFS-NSETSEEQLLNDL-----------SNVDLLVIDEIGVQTESRYEKVIINQIVD  189 (244)
T ss_pred             ---------EEEEHHHHHHHHHHHHh-hccccHHHHHHHh-----------ccCCEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence                     00000000000000000 0000111222221           256799999996543  345567888887


Q ss_pred             Hh-cCCeeEEEEecCCCc-----ccHHHhhhh-----heeeecCCC
Q 025758          156 KY-SASCRLILCCNSSSK-----VTEAIRSRC-----LNIRINSPT  190 (248)
Q Consensus       156 ~~-~~~~~~Il~t~~~~~-----~~~~l~sR~-----~~i~~~~~~  190 (248)
                      .. .....+|++||....     +.+.+.||+     ..+.|.-.+
T Consensus       190 ~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~s  235 (244)
T PRK07952        190 RRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDS  235 (244)
T ss_pred             HHHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCCc
Confidence            54 335678888887642     344555665     256665433

>PLN03211 ABC transporter G-25; Provisional

Probab=99.25  E-value=1.7e-11  Score=112.12  Aligned_cols=158  Identities=18%  Similarity=0.192  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC--cccceecccceeeccCC----cccccc-eeeecccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGS----RNIDLE-LTTLSSAN   93 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~--~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~   93 (248)
                      +++.+...+++|+.  +.|.||||+|||||++++++. ..+.  .|.+.++|.+.......    ...... ....++.+
T Consensus        83 iL~~vs~~i~~Ge~--~aI~GpnGaGKSTLL~iLaG~-~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E  159 (659)
T PLN03211         83 ILNGVTGMASPGEI--LAVLGPSGSGKSTLLNALAGR-IQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE  159 (659)
T ss_pred             eeeCCEEEEECCEE--EEEECCCCCCHHHHHHHHhCC-CCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence            34444444444433  669999999999999999984 4443  78899988754211000    000000 01112222


Q ss_pred             eeeeCCCC---cCcchh---HHHHHHHHHHH--hc--------CCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758           94 HVELSPSD---AGFQDR---YVVQEVIKEMA--KN--------RPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (248)
Q Consensus        94 ~~~~~~~~---~~~~~~---~~~~~~~~~~~--~~--------~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (248)
                      .+.+....   ......   ..+.+.++.+.  ..        ....+|+            ..+|+++++||| .+||.
T Consensus       160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~  239 (659)
T PLN03211        160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA  239 (659)
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence            22221100   001111   11233333221  10        1113442            347999999999 89999


Q ss_pred             HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhh
Q 025758          145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      .....+.+++.+..+ +..+|+++|+++.....+.+|+
T Consensus       240 ~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~i  277 (659)
T PLN03211        240 TAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSV  277 (659)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceE
Confidence            999999999988753 4578888888774344555665

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.25  E-value=9.2e-12  Score=101.18  Aligned_cols=157  Identities=17%  Similarity=0.247  Sum_probs=85.8

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee------eecccc
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT------TLSSAN   93 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~   93 (248)
                      +.+...+..|.  .+.|.||||+||||+++++++ +. +.+|.+.++|..+....+.   ....+-.+      ..+..+
T Consensus        13 ~~vsl~i~~Ge--i~~l~G~nGsGKSTLl~~l~G-l~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   88 (248)
T PRK03695         13 GPLSAEVRAGE--ILHLVGPNGAGKSTLLARMAG-LL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ   88 (248)
T ss_pred             cceEEEEcCCC--EEEEECCCCCCHHHHHHHHcC-CC-CCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence            33333444443  367999999999999999998 44 4578888888654311100   00000000      001111


Q ss_pred             eeeeCCCCcCcc--hhHHHHHHHHHH-----HhcCCCcCCC------------CC-------CeeEEEEeCC-CCCCHHH
Q 025758           94 HVELSPSDAGFQ--DRYVVQEVIKEM-----AKNRPIDTKG------------KR-------GFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        94 ~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~------------~~-------~~~viiiDE~-d~l~~~~  146 (248)
                      ++.+........  ....+.+.++.+     .......+|+            ..       +++++++||| ..||+..
T Consensus        89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~  168 (248)
T PRK03695         89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ  168 (248)
T ss_pred             HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence            121111100000  011223333222     1122223332            22       5699999999 8999999


Q ss_pred             HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+.+++.+... +..+|++|++... ...+.+|+.++
T Consensus       169 ~~~l~~~L~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l  206 (248)
T PRK03695        169 QAALDRLLSELCQQGIAVVMSSHDLNH-TLRHADRVWLL  206 (248)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEE
Confidence            9999999988753 4567777777554 44677777444

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=4.1e-11  Score=97.51  Aligned_cols=160  Identities=16%  Similarity=0.228  Sum_probs=88.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeeccC---Ccccccceee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDAG---SRNIDLELTT----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----   88 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..     +.+|.+.++|.+......   .......+..    
T Consensus        18 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-l~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~   94 (250)
T PRK14262         18 AVKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINR-MNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT   94 (250)
T ss_pred             eEeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhc-cccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence            4455555555553  367999999999999999998 444     267888888865431000   0000000000    


Q ss_pred             ---ecccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           89 ---LSSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                         .+..+++.+.....+...    ...+.+.++.+         .......+|+            ..+++++++||| 
T Consensus        95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~  174 (250)
T PRK14262         95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT  174 (250)
T ss_pred             cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence               011111111000000000    00111222211         1122223332            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..||......+.+++.+......+|++||+... ...+.+|+..+
T Consensus       175 ~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~-~~~~~d~i~~l  218 (250)
T PRK14262        175 SALDPIATQRIEKLLEELSENYTIVIVTHNIGQ-AIRIADYIAFM  218 (250)
T ss_pred             cccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhCCEEEEE
Confidence            899999999999999887655667777777554 44666776443

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.25  E-value=9.2e-12  Score=113.76  Aligned_cols=141  Identities=18%  Similarity=0.230  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (248)
                      .+++.++-.+++|..  +.+.|++||||||+++.+.+ +..|..|.+.++|.+...-...          ...+.+++.+
T Consensus       487 ~vL~~isL~I~~Ge~--vaIvG~SGsGKSTL~KLL~g-ly~p~~G~I~~dg~dl~~i~~~----------~lR~~ig~V~  553 (709)
T COG2274         487 PVLEDLSLEIPPGEK--VAIVGRSGSGKSTLLKLLLG-LYKPQQGRILLDGVDLNDIDLA----------SLRRQVGYVL  553 (709)
T ss_pred             chhhceeEEeCCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEeHHhcCHH----------HHHhheeEEc
Confidence            466666666666543  66999999999999999998 8899999999999766522211          1122233333


Q ss_pred             CCcCcc---------------hhHHHHHHHH-----HHHh-----------cCCCcCCC------------CCCeeEEEE
Q 025758          100 SDAGFQ---------------DRYVVQEVIK-----EMAK-----------NRPIDTKG------------KRGFKVLVL  136 (248)
Q Consensus       100 ~~~~~~---------------~~~~~~~~~~-----~~~~-----------~~~~~~~~------------~~~~~viii  136 (248)
                      .+.-..               ..+.+.+.+.     .+..           ....++|+            ..+|+|+++
T Consensus       554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL  633 (709)
T COG2274         554 QDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL  633 (709)
T ss_pred             ccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence            322110               0011111111     1111           11113332            458999999


Q ss_pred             eCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcc
Q 025758          137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (248)
Q Consensus       137 DE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~  173 (248)
                      ||+ ..+|+.....+...+.+...+.++|+++|++..+
T Consensus       634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti  671 (709)
T COG2274         634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI  671 (709)
T ss_pred             eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh
Confidence            999 8999999999999999988888999999997543

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=1.6e-11  Score=101.39  Aligned_cols=158  Identities=16%  Similarity=0.235  Sum_probs=91.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---ccccccee-------eec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT-------TLS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~   90 (248)
                      +++.+...+.+|.  .+.|.|+||+||||+++++++ +..+.+|.+.++|.........   ....+-.+       ..+
T Consensus        22 ~l~~v~l~i~~Ge--~~~I~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t   98 (277)
T PRK13642         22 QLNGVSFSITKGE--WVSIIGQNGSGKSTTARLIDG-LFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGAT   98 (277)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCC
Confidence            4445555555553  367999999999999999998 6688999999988654311000   00000000       001


Q ss_pred             ccceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           91 SANHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      +.+++.+.....+....   ..+.+.++.     .....+..+|+            ..+|+++|+||| ..||+.....
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~  178 (277)
T PRK13642         99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE  178 (277)
T ss_pred             HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            11111111100011110   011222221     22223334442            448999999999 8999999999


Q ss_pred             HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +++++.+...  +..+|++|++...+.  ..+|+.+
T Consensus       179 l~~~l~~l~~~~g~tiil~sH~~~~~~--~~d~i~~  212 (277)
T PRK13642        179 IMRVIHEIKEKYQLTVLSITHDLDEAA--SSDRILV  212 (277)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHH--hCCEEEE
Confidence            9999988754  467888888877763  3677643

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.24  E-value=1.9e-11  Score=100.65  Aligned_cols=160  Identities=15%  Similarity=0.226  Sum_probs=88.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeeccC---Ccccccceee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDAG---SRNIDLELTT----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----   88 (248)
                      +.+.+...+.+|.  .+.|.|+||+||||++++|++. ..     +..|.+.++|.++.....   .......+..    
T Consensus        39 il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl-~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~  115 (271)
T PRK14238         39 ALKNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRM-VELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN  115 (271)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhh-ccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence            3444444444443  3679999999999999999994 44     478889888865421000   0000000000    


Q ss_pred             ---ecccceeeeCCCCcCcchhHH----HHHHHHH---------HHhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           89 ---LSSANHVELSPSDAGFQDRYV----VQEVIKE---------MAKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                         .+..+++.+.....+......    +.+.++.         .....+..+|+            ..+++++++||| 
T Consensus       116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt  195 (271)
T PRK14238        116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT  195 (271)
T ss_pred             cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence               011111111000000000001    1111111         11223334442            448999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..||+.....+.+++.+...+..+|++|++... ...+.+|+..+
T Consensus       196 ~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~-i~~~~d~i~~l  239 (271)
T PRK14238        196 SALDPISTLKVEELVQELKKDYSIIIVTHNMQQ-AARISDKTAFF  239 (271)
T ss_pred             CcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH-HHHhCCEEEEE
Confidence            899999999999999887665667777776554 44666776443

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.24  E-value=1.6e-11  Score=99.92  Aligned_cols=162  Identities=15%  Similarity=0.245  Sum_probs=88.7

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-C---Ccccceecccceeecc-C--Ccccccce--ee--
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-P---GAEKVKVENKTWKIDA-G--SRNIDLEL--TT--   88 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-~---~~~~~~~~~~~~~~~~-~--~~~~~~~~--~~--   88 (248)
                      .+++.+...+.+|.  .+.|.||||+||||+++++++.+.. +   .+|.+.++|.+..... +  .......+  +.  
T Consensus        17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~   94 (250)
T PRK14240         17 QALKKINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN   94 (250)
T ss_pred             eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence            34455555555553  3679999999999999999984321 2   5788988886543100 0  00000000  00  


Q ss_pred             ---ecccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           89 ---LSSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                         .+..+++.+.....+...    ...+.+.++.+         .......+|+            ..+|+++++||| 
T Consensus        95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~  174 (250)
T PRK14240         95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT  174 (250)
T ss_pred             cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence               011111111100001000    01111212211         1122234442            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..||+.....+.+++.+......+|++|++.. ....+.+|+..+
T Consensus       175 ~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~v~~l  218 (250)
T PRK14240        175 SALDPISTLKIEELIQELKKDYTIVIVTHNMQ-QASRISDKTAFF  218 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHH-HHHhhCCEEEEE
Confidence            89999999999999988765566777777754 444566776443

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.24  E-value=1.6e-12  Score=101.99  Aligned_cols=170  Identities=15%  Similarity=0.180  Sum_probs=101.5

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc----ccceeee--
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI----DLELTTL--   89 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--   89 (248)
                      +|.-.+++.+...+..|....  |+||||+||||+..++.+ ++.|++|.+...|+++....+....    ...++..  
T Consensus        14 FGGl~Al~~Vsl~v~~Gei~~--LIGPNGAGKTTlfNlitG-~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl   90 (250)
T COG0411          14 FGGLTAVNDVSLEVRPGEIVG--LIGPNGAGKTTLFNLITG-FYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRL   90 (250)
T ss_pred             cCCEEEEeceeEEEcCCeEEE--EECCCCCCceeeeeeecc-cccCCCceEEECCcccCCCCHHHHHhccceeecccccc
Confidence            444455555566666665555  999999999999999998 7899999999999866533332210    0011111  


Q ss_pred             ----cccceeeeCCC-------CcCc-----ch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeE
Q 025758           90 ----SSANHVELSPS-------DAGF-----QD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKV  133 (248)
Q Consensus        90 ----~~~~~~~~~~~-------~~~~-----~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~v  133 (248)
                          ++.+++-+...       ..+.     ..   .+.+.++++.+     +......+++            ..+|++
T Consensus        91 F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~l  170 (250)
T COG0411          91 FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKL  170 (250)
T ss_pred             cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCE
Confidence                11111100000       0000     00   11111222111     1111112221            458999


Q ss_pred             EEEeCC-CCCCHHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhheeeecCC
Q 025758          134 LVLNEV-DKLSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNIRINSP  189 (248)
Q Consensus       134 iiiDE~-d~l~~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~i~~~~~  189 (248)
                      +++||| .+|++.....+..+|.+.++.  ..++++-|+ -.+.-.+++|..++.+...
T Consensus       171 LLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd-M~~Vm~l~dri~Vl~~G~~  228 (250)
T COG0411         171 LLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD-MKLVMGLADRIVVLNYGEV  228 (250)
T ss_pred             EEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec-cHHHhhhccEEEeccCCcC
Confidence            999999 899999999999999998764  556666555 5555599999988888754

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=99.24  E-value=4.4e-10  Score=101.58  Aligned_cols=186  Identities=13%  Similarity=0.179  Sum_probs=106.9

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC-
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP-   99 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   99 (248)
                      ++..|.-..-++.+.+++|.|++|+|||++|+.++..+ ....        +|.                     .+.. 
T Consensus         3 ~~~Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~-~~~~--------pfv---------------------~i~~~   52 (589)
T TIGR02031         3 AKLALTLLAVDPSLGGVAIRARAGTGKTALARALAEIL-PPIM--------PFV---------------------ELPLG   52 (589)
T ss_pred             HHHHHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhC-CcCC--------CeE---------------------ecCcc
Confidence            34444444445558889999999999999999999843 2110        111                     0100 


Q ss_pred             -CCcCcchhHHHHHHHHHHH-hcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-------------CCeeEE
Q 025758          100 -SDAGFQDRYVVQEVIKEMA-KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLI  164 (248)
Q Consensus       100 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-------------~~~~~I  164 (248)
                       ..........+...+..-. ...+ ++-...+..+++|||++.+++..++.|+..+++..             ....+|
T Consensus        53 ~t~d~L~G~idl~~~~~~g~~~~~~-G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lI  131 (589)
T TIGR02031        53 VTEDRLIGGIDVEESLAGGQRVTQP-GLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALI  131 (589)
T ss_pred             cchhhcccchhhhhhhhcCcccCCC-CCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEE
Confidence             0000001001111111000 0111 11123455699999999999999999999998642             223456


Q ss_pred             EEecCCC---cccHHHhhhhh-eeeecC-CCHHHHHHHHHHHHH-----------------------HcCCCCCHHHHHH
Q 025758          165 LCCNSSS---KVTEAIRSRCL-NIRINS-PTEEQIVKVLEFIAK-----------------------KEGLQLPSGFATR  216 (248)
Q Consensus       165 l~t~~~~---~~~~~l~sR~~-~i~~~~-~~~~~~~~il~~~~~-----------------------~~~~~~~~~~~~~  216 (248)
                      .++|..+   .+.+++.+|+- .+.+.. ++.++...++.....                       ...+.++++.+.+
T Consensus       132 At~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~  211 (589)
T TIGR02031       132 ATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKE  211 (589)
T ss_pred             EecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHH
Confidence            5555443   68899999993 344433 344544555544321                       1256788998888


Q ss_pred             HHHHc---c-ccHHHHHHHHHHHhh
Q 025758          217 LAEKS---N-RSLRRAILSFETCRV  237 (248)
Q Consensus       217 l~~~~---~-g~~r~~~~~l~~~~~  237 (248)
                      |++.+   + .++|..+.++..+..
T Consensus       212 l~~~~~~~gv~s~Ra~i~~~r~ArA  236 (589)
T TIGR02031       212 LVLTAASLGISGHRADLFAVRAAKA  236 (589)
T ss_pred             HHHHHHHcCCCCccHHHHHHHHHHH
Confidence            87664   2 236777776665554

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.24  E-value=5.3e-12  Score=112.67  Aligned_cols=160  Identities=14%  Similarity=0.134  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----ccccccee------ee
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELT------TL   89 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~   89 (248)
                      .+.+.+...+..|.  .+.|.||||+|||||++++++ +..+.+|.+.++|.++....+.    ....+-.+      ..
T Consensus        18 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   94 (501)
T PRK10762         18 KALSGAALNVYPGR--VMALVGENGAGKSTMMKVLTG-IYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL   94 (501)
T ss_pred             EEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence            34555555555553  366999999999999999998 6688899999988654311110    00000010      01


Q ss_pred             cccceeeeCCCC---cC-cch---hHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758           90 SSANHVELSPSD---AG-FQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (248)
Q Consensus        90 ~~~~~~~~~~~~---~~-~~~---~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (248)
                      ++.+++.+....   .+ ...   ...+.+.++.+.     ...+..+|+            ..+|+++++||| ..+|+
T Consensus        95 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~  174 (501)
T PRK10762         95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD  174 (501)
T ss_pred             cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCH
Confidence            112222221110   00 001   112233333321     111223332            458999999999 89999


Q ss_pred             HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .....+.+++.+... +..+|++||+.. ....+.+|+..
T Consensus       175 ~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~  213 (501)
T PRK10762        175 TETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTV  213 (501)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            999999999988744 345777776654 44467777743

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.24  E-value=5.2e-11  Score=97.14  Aligned_cols=157  Identities=17%  Similarity=0.210  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC----CcccceecccceeeccCCcccccceeeecccceee
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP----GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+    ..|.+.++|.++..... ...  ....+.......
T Consensus        18 il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~~~~~G~i~~~g~~i~~~~~-~~~--~i~~v~q~~~~~   91 (254)
T PRK10418         18 LVHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALG-ILPAGVRQTAGRVLLDGKPVAPCAL-RGR--KIATIMQNPRSA   91 (254)
T ss_pred             eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCCcCCEEEECCeecccccc-ccc--eEEEEecCCccc
Confidence            3444444444443  467999999999999999998 5566    78989888865431100 000  000000000000


Q ss_pred             eCCC------------CcCc-chhHHHHHHHHHHH--------hcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758           97 LSPS------------DAGF-QDRYVVQEVIKEMA--------KNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (248)
Q Consensus        97 ~~~~------------~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~------------~~~~~viiiDE~-d~l  142 (248)
                      +.+.            ..+. .....+.+.++.+.        ......+|+            ..+|+++|+||| ..|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~L  171 (254)
T PRK10418         92 FNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDL  171 (254)
T ss_pred             cCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence            0000            0000 01112233333321        112223442            458999999999 899


Q ss_pred             CHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       143 ~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      |+.....+.+++++...  +..+|++||+... ...+.+|+..+
T Consensus       172 D~~~~~~l~~~L~~~~~~~g~til~~sH~~~~-~~~~~d~v~~l  214 (254)
T PRK10418        172 DVVAQARILDLLESIVQKRALGMLLVTHDMGV-VARLADDVAVM  214 (254)
T ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhCCEEEEE
Confidence            99999999999987643  4567777776555 34666776443

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.24  E-value=5.7e-11  Score=95.03  Aligned_cols=144  Identities=22%  Similarity=0.242  Sum_probs=83.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------ecccceeeeCCC----Cc-
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSANHVELSPS----DA-  102 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~----~~-  102 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.++|++....  .....+-.+.        .+..+++.+...    .. 
T Consensus         8 ~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~--~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~   84 (223)
T TIGR03771         8 LLGLLGPNGAGKTTLLRAILG-LIPPAKGTVKVAGASPGKG--WRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLR   84 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCccchHh--hCcEEEecccccccCCCCccHHHHHHhcccccccccc
Confidence            377999999999999999998 6688899999988653200  0000000000        011111111000    00 


Q ss_pred             -C-cchhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-Ce
Q 025758          103 -G-FQDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SC  161 (248)
Q Consensus       103 -~-~~~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~  161 (248)
                       . ......+.+.++.+.     ......+|+            ..+|+++|+||| ..||+.....+.+.+.+... +.
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~  164 (223)
T TIGR03771        85 RPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT  164 (223)
T ss_pred             CCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence             0 001112333333321     112223332            458999999999 89999999999999988754 45


Q ss_pred             eEEEEecCCCcccHHHhhhhhe
Q 025758          162 RLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+|++||+.. ....+.+|...
T Consensus       165 tvii~sH~~~-~~~~~~d~i~~  185 (223)
T TIGR03771       165 AILMTTHDLA-QAMATCDRVVL  185 (223)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEE
Confidence            6777777755 34456666543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.24  E-value=8.4e-10  Score=95.47  Aligned_cols=205  Identities=18%  Similarity=0.163  Sum_probs=124.7

Q ss_pred             CCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      ....+++|+..+.+.+.+.+..  .....++++|++||||-.+||+|=+.-.+.+..-+.+++       +..+.     
T Consensus       138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNc-------aAip~-----  205 (464)
T COG2204         138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNC-------AAIPE-----  205 (464)
T ss_pred             cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeec-------ccCCH-----
Confidence            3577889998888888777653  223349999999999999999999743222222222222       11110     


Q ss_pred             eecccce-eeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc--------
Q 025758           88 TLSSANH-VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--------  158 (248)
Q Consensus        88 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~--------  158 (248)
                          ... -++.....|...          -+.....+.....+...++||||..|+.+.|..|++++++..        
T Consensus       206 ----~l~ESELFGhekGAFT----------GA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~  271 (464)
T COG2204         206 ----NLLESELFGHEKGAFT----------GAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNK  271 (464)
T ss_pred             ----HHHHHHhhcccccCcC----------CcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCc
Confidence                000 000000000000          000111122224466789999999999999999999998642        


Q ss_pred             ---CCeeEEEEecCCC-------cccHHHhhhhhe--eeecCCCH--HHH---HHHHHH-HHHHcC---CCCCHHHHHHH
Q 025758          159 ---ASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPTE--EQI---VKVLEF-IAKKEG---LQLPSGFATRL  217 (248)
Q Consensus       159 ---~~~~~Il~t~~~~-------~~~~~l~sR~~~--i~~~~~~~--~~~---~~il~~-~~~~~~---~~~~~~~~~~l  217 (248)
                         -++++|.+||..-       .+-++|--|.-+  |++||+-+  +++   ...+.+ .+...+   ..+++++++.+
T Consensus       272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L  351 (464)
T COG2204         272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL  351 (464)
T ss_pred             ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence               2356888888763       466677777754  44455432  232   222222 233333   35889999988


Q ss_pred             HHH-ccccHHHHHHHHHHHhhhcc
Q 025758          218 AEK-SNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       218 ~~~-~~g~~r~~~~~l~~~~~~~~  240 (248)
                      ... ..||+|++.|.++.++....
T Consensus       352 ~~y~WPGNVREL~N~ver~~il~~  375 (464)
T COG2204         352 LAYDWPGNVRELENVVERAVILSE  375 (464)
T ss_pred             HhCCCChHHHHHHHHHHHHHhcCC
Confidence            866 59999999999999987655

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.24  E-value=4.6e-11  Score=97.68  Aligned_cols=161  Identities=12%  Similarity=0.181  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----Ccccceecccceeecc--CCc-ccccceee---
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDA--GSR-NIDLELTT---   88 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~--~~~-~~~~~~~~---   88 (248)
                      .+.+.+...+.+|.  .+.|.||||+||||+++++++ +..+     .+|.+.++|.+.....  ... .....+..   
T Consensus        18 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laG-l~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~   94 (258)
T PRK14241         18 HAVEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNR-MHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP   94 (258)
T ss_pred             eeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhc-cCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccc
Confidence            34455555555543  477999999999999999999 4442     5899998886542100  000 00000000   


Q ss_pred             -----ecccceeeeCCCCcCc-ch---hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeC
Q 025758           89 -----LSSANHVELSPSDAGF-QD---RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNE  138 (248)
Q Consensus        89 -----~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE  138 (248)
                           .++.+++.+.....+. ..   ...+.+.++.+         .......+|+            ..+|+++++||
T Consensus        95 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  174 (258)
T PRK14241         95 NPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE  174 (258)
T ss_pred             ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence                 0001111100000000 00   01122222221         1122233442            45899999999


Q ss_pred             C-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       139 ~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      | ..||+.....+.+++.+......+|++||+... ...+.+|+.++
T Consensus       175 Pt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~-~~~~~d~i~~l  220 (258)
T PRK14241        175 PCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ-AARVSDQTAFF  220 (258)
T ss_pred             CCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence            9 799999999999999887555667777776554 44666776555

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.24  E-value=3.9e-12  Score=113.75  Aligned_cols=161  Identities=14%  Similarity=0.176  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----cccccceee------e
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT------L   89 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~   89 (248)
                      .+.+.+...+.+|.  .+.|.||||+|||||++++++ +..+.+|.+.++|.++....+.    ....+-.+.      .
T Consensus        19 ~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~   95 (510)
T PRK09700         19 HALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSG-IHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL   95 (510)
T ss_pred             EEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcC-CcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence            35555666665554  356999999999999999998 6678899999888654311110    000010100      1


Q ss_pred             cccceeeeCCC----CcCc---ch---hHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758           90 SSANHVELSPS----DAGF---QD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DK  141 (248)
Q Consensus        90 ~~~~~~~~~~~----~~~~---~~---~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~  141 (248)
                      ++.+++.+...    ..+.   ..   ...+.+.++.+.     ......+|+            ..+|+++|+||| ..
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~  175 (510)
T PRK09700         96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSS  175 (510)
T ss_pred             cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence            11122211110    0010   00   112223333221     111223442            458999999999 89


Q ss_pred             CCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhee
Q 025758          142 LSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       142 l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +|+.....+.++|.+.... ..+|++||+. .....+.+|+.++
T Consensus       176 LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l  218 (510)
T PRK09700        176 LTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVM  218 (510)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence            9999999999999887543 4566666664 4444677777443

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.24  E-value=8.4e-12  Score=102.33  Aligned_cols=163  Identities=13%  Similarity=0.166  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC----CCcccceecccceeecc--CCc-ccccceee----
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG----PGAEKVKVENKTWKIDA--GSR-NIDLELTT----   88 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~----~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~----   88 (248)
                      .+++.+...+..|.  .+.|.||||+|||||++++++.+..    +.+|.+.+++.++....  ... .....+..    
T Consensus        24 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  101 (264)
T PRK14243         24 LAVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN  101 (264)
T ss_pred             EEeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence            34555555555553  4669999999999999999984321    36788888886542100  000 00000000    


Q ss_pred             ---ecccceeeeCCCCcCcc--hhHHHHHHHHH---------HHhcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758           89 ---LSSANHVELSPSDAGFQ--DRYVVQEVIKE---------MAKNRPIDTKG------------KRGFKVLVLNEV-DK  141 (248)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~~------------~~~~~viiiDE~-d~  141 (248)
                         .+..+++.+.....+..  ....+.+.+..         ........+|+            ..+|+++|+||| ..
T Consensus       102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~  181 (264)
T PRK14243        102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA  181 (264)
T ss_pred             cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence               01111111111000000  00111111111         11222333442            458999999999 89


Q ss_pred             CCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758          142 LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       142 l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ||+..+..+.+++.+...+..+|++|++.+ ....+.+|+..+.
T Consensus       182 LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~-~~~~~~d~v~~l~  224 (264)
T PRK14243        182 LDPISTLRIEELMHELKEQYTIIIVTHNMQ-QAARVSDMTAFFN  224 (264)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe
Confidence            999999999999998766666777776644 4456667775554

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.24  E-value=1.3e-11  Score=102.18  Aligned_cols=159  Identities=13%  Similarity=0.173  Sum_probs=91.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-----cccccceee-------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDLELTT-------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------   88 (248)
                      +++.+...+..|..  +.|.||||+||||+++++++ +..+.+|.+.++|.+.......     ....+-.+.       
T Consensus        21 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-l~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~   97 (283)
T PRK13636         21 ALKGININIKKGEV--TAILGGNGAGKSTLFQNLNG-ILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS   97 (283)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence            55555666665543  66999999999999999998 6788999999998765311000     000000000       


Q ss_pred             ecccceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           89 LSSANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      .++.+++.+.....+....   ..+.+.++.+     .......+|+            ..+|+++++||| ..||+...
T Consensus        98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~  177 (283)
T PRK13636         98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV  177 (283)
T ss_pred             ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence            0111111110000011110   1112221211     1222333442            458999999999 89999999


Q ss_pred             HHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       148 ~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ..+.+++.+...  +..+|++|++.+. ...+.+|..+
T Consensus       178 ~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~  214 (283)
T PRK13636        178 SEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFV  214 (283)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEE
Confidence            999999988754  4567777777555 4467777743

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.24  E-value=6e-11  Score=97.48  Aligned_cols=160  Identities=14%  Similarity=0.220  Sum_probs=87.7

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC----CCcccceecccceeecc-C--Ccccccceeee-----
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG----PGAEKVKVENKTWKIDA-G--SRNIDLELTTL-----   89 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~----~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-----   89 (248)
                      ++.+...+.+|.  .+.|.||||+|||||++++++.+..    +..|.+.++|.++.... .  .......+...     
T Consensus        35 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  112 (267)
T PRK14235         35 LFDVDLDIPEKT--VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF  112 (267)
T ss_pred             EEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence            333444444443  3679999999999999999994432    37899998886543100 0  00000000000     


Q ss_pred             --cccceeeeCCCCcCc--c--h-hHHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           90 --SSANHVELSPSDAGF--Q--D-RYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        90 --~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                        ++.+++.+.....+.  .  . ...+.+.++.+.         ...+..+|+            ..+|+++++||| .
T Consensus       113 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~  192 (267)
T PRK14235        113 PKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCS  192 (267)
T ss_pred             CCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence              111111110000000  0  0 011222222211         112233442            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .||+.....+.++|.+...+..+|++|++.+. ...+.+|+..+
T Consensus       193 ~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~-~~~~~d~v~~l  235 (267)
T PRK14235        193 ALDPIATAKVEELIDELRQNYTIVIVTHSMQQ-AARVSQRTAFF  235 (267)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHH-HHhhCCEEEEE
Confidence            99999999999999987655567777777554 44666776443

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.24  E-value=8.1e-12  Score=102.74  Aligned_cols=161  Identities=18%  Similarity=0.189  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC--------cccceecccceeeccCCc-c--cccce--
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG--------AEKVKVENKTWKIDAGSR-N--IDLEL--   86 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~--------~~~~~~~~~~~~~~~~~~-~--~~~~~--   86 (248)
                      .+.+.+...+..|.  .+.|.||||+||||+++++++ +..+.        .|.+.++|.++....... .  ..+-.  
T Consensus        15 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG-~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~   91 (272)
T PRK13547         15 AILRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAG-DLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA   91 (272)
T ss_pred             eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEeccc
Confidence            34555555555553  366999999999999999998 55665        788888886543111000 0  00000  


Q ss_pred             ----eeecccceeeeCC--CC--cCcc---hhHHHHHHHHHH-----HhcCCCcCCC------------C---------C
Q 025758           87 ----TTLSSANHVELSP--SD--AGFQ---DRYVVQEVIKEM-----AKNRPIDTKG------------K---------R  129 (248)
Q Consensus        87 ----~~~~~~~~~~~~~--~~--~~~~---~~~~~~~~~~~~-----~~~~~~~~~~------------~---------~  129 (248)
                          ...+..+++.+..  ..  ....   ....+.+.++.+     .......+|+            .         .
T Consensus        92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~  171 (272)
T PRK13547         92 AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ  171 (272)
T ss_pred             CCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC
Confidence                0011112221110  00  0000   111122322221     1122223332            2         4


Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +|+++++||| ..||+.....+.+++.+...  +..+|++|++... ...+.+|+..+
T Consensus       172 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~-~~~~~d~i~~l  228 (272)
T PRK13547        172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL-AARHADRIAML  228 (272)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEE
Confidence            8999999999 89999999999999998754  3567777777554 45667777444

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=1.4e-11  Score=100.62  Aligned_cols=56  Identities=7%  Similarity=0.166  Sum_probs=43.9

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|+++++||| ..||......+.+.+.+......+|++|++.. ....+.+|+..+
T Consensus       169 ~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~-~~~~~~d~v~~l  225 (257)
T PRK14246        169 ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ-QVARVADYVAFL  225 (257)
T ss_pred             HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHH-HHHHhCCEEEEE
Confidence            458999999999 79999999999999988765567777777754 555667777444

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.23  E-value=1.1e-11  Score=101.75  Aligned_cols=160  Identities=16%  Similarity=0.236  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC------cccccceee------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS------RNIDLELTT------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~------   88 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++......      ....+-.+.      
T Consensus        26 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~  102 (265)
T TIGR02769        26 VLTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLG-LEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN  102 (265)
T ss_pred             EeeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence            4455555555553  366999999999999999998 6788899999888654311110      000000000      


Q ss_pred             --ecccceeeeCCCCc-Ccc---hhHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           89 --LSSANHVELSPSDA-GFQ---DRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        89 --~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                        .++.+++.+..... ...   ....+.+.++.+.      ......+|+            ..+|+++++||| ..||
T Consensus       103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD  182 (265)
T TIGR02769       103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD  182 (265)
T ss_pred             CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence              00000000000000 000   0112223333221      112223332            458999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +..+..+++.+++...  +..+|++|++.. ....+.+|+..+
T Consensus       183 ~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l  224 (265)
T TIGR02769       183 MVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVM  224 (265)
T ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEE
Confidence            9999999999988754  456777777654 344566776444

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.23  E-value=1.5e-11  Score=100.14  Aligned_cols=162  Identities=16%  Similarity=0.204  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc-CC---CcccceecccceeeccC---Ccccccceee----
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GP---GAEKVKVENKTWKIDAG---SRNIDLELTT----   88 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~-~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~----   88 (248)
                      .+.+.+...+.+|.  .+.|.||||+||||+++++++... .+   .+|.+.++|.++.....   .......+..    
T Consensus        19 ~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~   96 (252)
T PRK14239         19 KALNSVSLDFYPNE--ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN   96 (252)
T ss_pred             eeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence            34555555555553  367999999999999999998321 24   47888888865421000   0000000000    


Q ss_pred             ---ecccceeeeCCCCcCcchh----HHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           89 ---LSSANHVELSPSDAGFQDR----YVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                         .++.+++.+.....+....    ..+.+.++.+         .......+|+            ..+|+++|+||| 
T Consensus        97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  176 (252)
T PRK14239         97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT  176 (252)
T ss_pred             cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence               0111111110000000000    1111122111         1122333442            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..||+.....+.++|.+...+..+|++||+... ...+.+|+.++
T Consensus       177 ~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~-~~~~~d~i~~l  220 (252)
T PRK14239        177 SALDPISAGKIEETLLGLKDDYTMLLVTRSMQQ-ASRISDRTGFF  220 (252)
T ss_pred             cccCHHHHHHHHHHHHHHhhCCeEEEEECCHHH-HHHhCCEEEEE
Confidence            899999999999999887655667777777654 44566776443

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.23  E-value=1.7e-11  Score=107.15  Aligned_cols=154  Identities=18%  Similarity=0.265  Sum_probs=98.9

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (248)
                      .+++.++..+..|..-.  |.|++||||||++|++++ +..+.+|.+..+|.++... ...     .......-.+.|+-
T Consensus       305 ~Av~~VSf~l~~GE~lg--lVGeSGsGKSTlar~i~g-L~~P~~G~i~~~g~~~~~~-~~~-----~~~~r~~~QmvFQd  375 (539)
T COG1123         305 KAVDDVSFDLREGETLG--LVGESGSGKSTLARILAG-LLPPSSGSIIFDGQDLDLT-GGE-----LRRLRRRIQMVFQD  375 (539)
T ss_pred             eeeeeeeeEecCCCEEE--EECCCCCCHHHHHHHHhC-CCCCCCceEEEeCcccccc-cch-----hhhhhhheEEEEeC
Confidence            44555566666665444  999999999999999998 8889999999988762211 100     00000011122222


Q ss_pred             CCcCcchhHH-----------------------HHHHHHH------HHhcCCCcCCC------------CCCeeEEEEeC
Q 025758          100 SDAGFQDRYV-----------------------VQEVIKE------MAKNRPIDTKG------------KRGFKVLVLNE  138 (248)
Q Consensus       100 ~~~~~~~~~~-----------------------~~~~~~~------~~~~~~~~~~~------------~~~~~viiiDE  138 (248)
                      +..+..+..+                       +.++++.      +...+|.++|+            ..+|++++.||
T Consensus       376 p~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DE  455 (539)
T COG1123         376 PYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDE  455 (539)
T ss_pred             cccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecC
Confidence            2222222211                       2222221      35556777875            34899999999


Q ss_pred             C-CCCCHHHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhhe
Q 025758          139 V-DKLSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       139 ~-d~l~~~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      + ..||+..+..++.++.+....  ..+++|||+. .+...+++|..+
T Consensus       456 p~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~v  502 (539)
T COG1123         456 PVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAV  502 (539)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEE
Confidence            9 899999999999999877554  6789998874 555688888743

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.23  E-value=3.8e-11  Score=96.11  Aligned_cols=158  Identities=20%  Similarity=0.309  Sum_probs=84.9

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc--c--ceeeccCC-------cccccceeee
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN--K--TWKIDAGS-------RNIDLELTTL   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~--~--~~~~~~~~-------~~~~~~~~~~   89 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.+++  .  +.....+.       ....+-.+..
T Consensus        23 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~   99 (224)
T TIGR02324        23 VLKNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYA-NYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL   99 (224)
T ss_pred             EEecceEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence            3444544555443  367999999999999999998 6678888888763  1  21100000       0000000000


Q ss_pred             ------cccceeeeCCCCcCcch---hHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758           90 ------SSANHVELSPSDAGFQD---RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DK  141 (248)
Q Consensus        90 ------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~  141 (248)
                            ++.+.+.+.....+...   ...+.+.++.+.      ......+|+            ..+|+++++||| ..
T Consensus       100 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~  179 (224)
T TIGR02324       100 RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS  179 (224)
T ss_pred             ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence                  00001110000001110   111222232221      112223332            448999999999 89


Q ss_pred             CCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhh
Q 025758          142 LSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       142 l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      +|+.....+++.+.+... +..+|++||+ ......+.+|+.
T Consensus       180 LD~~~~~~l~~~l~~~~~~g~tii~vsH~-~~~~~~~~d~i~  220 (224)
T TIGR02324       180 LDAANRQVVVELIAEAKARGAALIGIFHD-EEVRELVADRVM  220 (224)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcceeE
Confidence            999999999999988754 3567777776 444445666543

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=1.3e-11  Score=100.48  Aligned_cols=56  Identities=9%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|+++++||| ..+|+.....+.+++++...+..+|++|++.. ....+.+|+..+
T Consensus       164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  220 (252)
T PRK14272        164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH-QAARVSDTTSFF  220 (252)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence            458999999999 89999999999999998765566777777655 444677777444

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.23  E-value=3.5e-11  Score=98.88  Aligned_cols=160  Identities=14%  Similarity=0.191  Sum_probs=88.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeeccC---Ccccccceee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDAG---SRNIDLELTT----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----   88 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..     +.+|.+.++|.++.....   .......+..    
T Consensus        35 il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~G-l~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~  111 (267)
T PRK14237         35 AIKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNR-MNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN  111 (267)
T ss_pred             eEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHh-ccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence            3334444444443  367999999999999999999 443     468889888865531000   0000000000    


Q ss_pred             ---ecccceeeeCCCCcCcchh----HHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           89 ---LSSANHVELSPSDAGFQDR----YVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                         .++.+++.+.....+....    ..+.+.++.+         ....+..+|+            ..+++++++||| 
T Consensus       112 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt  191 (267)
T PRK14237        112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPA  191 (267)
T ss_pred             cccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence               0111111110000010000    1111122211         1222334442            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..||+.....+.+++.+...+..+|++|++.+ ....+.+|+.++
T Consensus       192 ~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~-~~~~~~d~i~~l  235 (267)
T PRK14237        192 SALDPISTMQLEETMFELKKNYTIIIVTHNMQ-QAARASDYTAFF  235 (267)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCEEEEE
Confidence            89999999999999998765566777777655 455677777443

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.23  E-value=3.4e-11  Score=97.54  Aligned_cols=160  Identities=13%  Similarity=0.126  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCc--ccccce--eee------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSR--NIDLEL--TTL------   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~------   89 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++.+ ..+.+|.+.++|.+........  ...+.+  +..      
T Consensus        15 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (243)
T TIGR01978        15 ILKGVNLTVKKGE--IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV   92 (243)
T ss_pred             EEeccceEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence            4445555555443  36799999999999999999843 2578899999886543111100  000000  000      


Q ss_pred             cccceeeeCCCC-cC------cch---hHHHHHHHHHH------HhcCCC-cCCC------------CCCeeEEEEeCC-
Q 025758           90 SSANHVELSPSD-AG------FQD---RYVVQEVIKEM------AKNRPI-DTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        90 ~~~~~~~~~~~~-~~------~~~---~~~~~~~~~~~------~~~~~~-~~~~------------~~~~~viiiDE~-  139 (248)
                      +..+++.+.... ..      ...   ...+.+.++.+      ...... .+|+            ..+|+++++||| 
T Consensus        93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  172 (243)
T TIGR01978        93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID  172 (243)
T ss_pred             CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence            000000000000 00      000   01122222221      111222 2552            448999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHH-hhhhhe
Q 025758          140 DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCLN  183 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l-~sR~~~  183 (248)
                      ..||+.....+.+++.+... +..+|++||+.+.+. .+ .+|+..
T Consensus       173 ~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~-~~~~d~i~~  217 (243)
T TIGR01978       173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLN-YIKPDYVHV  217 (243)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHH-hhcCCeEEE
Confidence            89999999999999988754 356777777765443 44 566643

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=6.2e-12  Score=112.36  Aligned_cols=163  Identities=16%  Similarity=0.155  Sum_probs=92.0

Q ss_pred             ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC--CcccceecccceeeccCC----cccccceee--
Q 025758           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS----RNIDLELTT--   88 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~--   88 (248)
                      +...+.+.+...+..|.  .+.|.||||+|||||++++++ +..+  .+|.+.++|.++......    ....+-.+.  
T Consensus        16 ~~~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~   92 (506)
T PRK13549         16 GGVKALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELA   92 (506)
T ss_pred             CCeEeecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhC-CCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccc
Confidence            33345566666666554  366999999999999999999 5554  689998888655311100    000011110  


Q ss_pred             ----ecccceeeeCCCCc--C-cch---hHHHHHHHHHHHh-----cCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           89 ----LSSANHVELSPSDA--G-FQD---RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        89 ----~~~~~~~~~~~~~~--~-~~~---~~~~~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                          .++.+++.+.....  + ...   ...+.+.++.+.-     .....+|+            ..+|+++|+||| .
T Consensus        93 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~  172 (506)
T PRK13549         93 LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTA  172 (506)
T ss_pred             cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence                11112222211100  1 010   1123333333211     11123332            458999999999 7


Q ss_pred             CCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .||+.....+.+++.+... +..+|++||+.. ....+.+|+.+
T Consensus       173 ~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~  215 (506)
T PRK13549        173 SLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICV  215 (506)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEE
Confidence            9999999999999988743 345677766654 44466677643

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=3.4e-11  Score=99.61  Aligned_cols=159  Identities=17%  Similarity=0.239  Sum_probs=88.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC-C----cccccceeee------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-S----RNIDLELTTL------   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~------   89 (248)
                      +++.+...+..|.  .+.|.||||+|||||++++++ +..+.+|.+.++|.++....+ .    ......+...      
T Consensus        22 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~   98 (280)
T PRK13649         22 ALFDVNLTIEDGS--YTAFIGHTGSGKSTIMQLLNG-LHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL   98 (280)
T ss_pred             eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence            3444444455443  366999999999999999998 678889999998875432110 0    0000000000      


Q ss_pred             ---cccceeeeCCCCcCcchh---HHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758           90 ---SSANHVELSPSDAGFQDR---YVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (248)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (248)
                         ++.+.+.+.....+....   ..+.+.++.+      .......+|+            ..+|+++|+||| ..||+
T Consensus        99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~  178 (280)
T PRK13649         99 FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP  178 (280)
T ss_pred             ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence               111111110000001000   0112222221      1112223432            448999999999 89999


Q ss_pred             HHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       145 ~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .....+.+.|.+... +..+|++|++.. ....+.+|+..
T Consensus       179 ~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~  217 (280)
T PRK13649        179 KGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYV  217 (280)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEE
Confidence            999999999988754 456677776654 44566677643

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.23  E-value=8.6e-11  Score=96.00  Aligned_cols=142  Identities=15%  Similarity=0.152  Sum_probs=82.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--e-----eecccceeeeCCCCcCcchh
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--T-----TLSSANHVELSPSDAGFQDR  107 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~  107 (248)
                      .+.+.|++|+||||+++++++ +..+..|.+.++|.++....... .....+  +     ..+..+++....  .  ...
T Consensus        49 ~~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~--~--~~~  123 (257)
T cd03288          49 KVGICGRTGSGKSSLSLAFFR-MVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPEC--K--CTD  123 (257)
T ss_pred             EEEEECCCCCCHHHHHHHHHc-ccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCC--C--CCH
Confidence            477999999999999999998 66888899988886543111000 000000  0     000001111000  0  000


Q ss_pred             HHHHHHH-----HHHHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758          108 YVVQEVI-----KEMAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus       108 ~~~~~~~-----~~~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~  158 (248)
                      ....+.+     .......           ...++.            ..+|+++++||| ..||+.....+.+++.+..
T Consensus       124 ~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~  203 (257)
T cd03288         124 DRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF  203 (257)
T ss_pred             HHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc
Confidence            1111111     1111111           112331            458899999999 8999999999999998876


Q ss_pred             CCeeEEEEecCCCcccHHHhhhhhee
Q 025758          159 ASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       159 ~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+..+|++|++...+. . .+|+..+
T Consensus       204 ~~~tiii~sh~~~~~~-~-~dri~~l  227 (257)
T cd03288         204 ADRTVVTIAHRVSTIL-D-ADLVLVL  227 (257)
T ss_pred             CCCEEEEEecChHHHH-h-CCEEEEE
Confidence            5677888888877664 2 6776433

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=6e-11  Score=96.74  Aligned_cols=161  Identities=14%  Similarity=0.193  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc-CC---Ccccceecccceeecc-C--Ccccccceeee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GP---GAEKVKVENKTWKIDA-G--SRNIDLELTTL----   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~-~~---~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~----   89 (248)
                      +++.+...+.+|.  .+.+.||||+||||+++++++.+. .+   ..|.+.++|.+..... +  .......+..-    
T Consensus        21 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   98 (253)
T PRK14261         21 ALYDITISIPKNR--VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP   98 (253)
T ss_pred             eeeeeEEEECCCc--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence            4445544555443  367999999999999999998332 12   3688888886543110 0  00000000000    


Q ss_pred             ---cccceeeeCCCCcCcchh----HHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           90 ---SSANHVELSPSDAGFQDR----YVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                         ++.+++.+.....+....    ..+.+.++.+         .......+|+            ..+|+++++||| .
T Consensus        99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~  178 (253)
T PRK14261         99 FPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCS  178 (253)
T ss_pred             CcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence               111111111110010000    1112222211         1122223442            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .||+.....+.+++.+...+..+|++|++...+ +.+.+|+..+
T Consensus       179 gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~-~~~~d~v~~l  221 (253)
T PRK14261        179 ALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA-ARVSDYTGFM  221 (253)
T ss_pred             cCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH-HhhCCEEEEE
Confidence            999999999999999876656677777765554 3566776443

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=3.6e-10  Score=102.79  Aligned_cols=205  Identities=17%  Similarity=0.290  Sum_probs=136.0

Q ss_pred             CCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      |--.++-++|.++-++.+.+.+......+-+|+|+||+|||.++.-+|..+...+....=.+...+.             
T Consensus       165 r~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-------------  231 (786)
T COG0542         165 REGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-------------  231 (786)
T ss_pred             hcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-------------
Confidence            3456777899999998888888766666677999999999999999999875433211100000000             


Q ss_pred             eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------HHHHHHHHHHHHHhc
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRRTMEKYS  158 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~ll~~le~~~  158 (248)
                             +.+..--.|..-....++-++.+.+.-.     ...+-|+||||++.+-         -++.|.|...+-.  
T Consensus       232 -------LD~g~LvAGakyRGeFEeRlk~vl~ev~-----~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--  297 (786)
T COG0542         232 -------LDLGSLVAGAKYRGEFEERLKAVLKEVE-----KSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--  297 (786)
T ss_pred             -------ecHHHHhccccccCcHHHHHHHHHHHHh-----cCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--
Confidence                   1111111222222334444554443222     1236799999998662         1245555555543  


Q ss_pred             CCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccc------
Q 025758          159 ASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR------  223 (248)
Q Consensus       159 ~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~g------  223 (248)
                      ....+|-.|+..+     +-.++|-.|++.|..+.|+.++...||.-..++    .++.++++++...+..+.+      
T Consensus       298 GeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~  377 (786)
T COG0542         298 GELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRF  377 (786)
T ss_pred             CCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCC
Confidence            3356777776543     577899999999999999999999999877665    3778999999998876532      


Q ss_pred             cHHHHHHHHHHHhhhc
Q 025758          224 SLRRAILSFETCRVQQ  239 (248)
Q Consensus       224 ~~r~~~~~l~~~~~~~  239 (248)
                      -+-.+|.+++.++...
T Consensus       378 LPDKAIDLiDeA~a~~  393 (786)
T COG0542         378 LPDKAIDLLDEAGARV  393 (786)
T ss_pred             CCchHHHHHHHHHHHH
Confidence            2678899999888543

>smart00350 MCM minichromosome maintenance proteins

Probab=99.23  E-value=5.5e-10  Score=99.59  Aligned_cols=73  Identities=21%  Similarity=0.362  Sum_probs=54.3

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhc-------------CCeeEEEEecCCC-------------cccHHHhhhh-h
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS-------------KVTEAIRSRC-L  182 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~-------------~~~~~Il~t~~~~-------------~~~~~l~sR~-~  182 (248)
                      +..+++|||++.|++..+..|+..+|+..             ....+|.++|...             .+.+++.||| .
T Consensus       300 ~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdL  379 (509)
T smart00350      300 DNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDL  379 (509)
T ss_pred             CCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceee
Confidence            55699999999999999999999998642             2234566666331             5899999999 3


Q ss_pred             -eeeecCCCHHHHHHHHHHHH
Q 025758          183 -NIRINSPTEEQIVKVLEFIA  202 (248)
Q Consensus       183 -~i~~~~~~~~~~~~il~~~~  202 (248)
                       .+..+.|+.+.-..++.+++
T Consensus       380 i~~~~d~~~~~~d~~i~~~i~  400 (509)
T smart00350      380 LFVVLDEVDEERDRELAKHVV  400 (509)
T ss_pred             EEEecCCCChHHHHHHHHHHH
Confidence             45557788777777766643

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.22  E-value=1.7e-11  Score=97.38  Aligned_cols=141  Identities=13%  Similarity=0.121  Sum_probs=75.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccce-ecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHH--
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVK-VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--  113 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  113 (248)
                      +.|.||||+||||+++++++ +..+.+|.+. +++..+.  .+...  .-....+..+++.+.....+..........  
T Consensus        16 ~~l~G~NGsGKSTLlk~i~G-l~~~~sG~i~~~~~~~~~--~~~~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~   90 (213)
T PRK15177         16 IGILAAPGSGKTTLTRLLCG-LDAPDEGDFIGLRGDALP--LGANS--FILPGLTGEENARMMASLYGLDGDEFSHFCYQ   90 (213)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CccCCCCCEEEecCceec--ccccc--ccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            66999999999999999998 6678888875 5553221  00000  000111111222211110011111101111  


Q ss_pred             ---HHHHHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHH
Q 025758          114 ---IKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI  177 (248)
Q Consensus       114 ---~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l  177 (248)
                         +..........+++            ..+|+++++||| ..+++.....+.+.+.+..+...+|++||+.. ....+
T Consensus        91 ~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~-~~~~~  169 (213)
T PRK15177         91 LTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPR-LIKEH  169 (213)
T ss_pred             HhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHH-HHHHh
Confidence               11111111222221            448899999997 88999988888887754333344677777655 44456


Q ss_pred             hhhhhe
Q 025758          178 RSRCLN  183 (248)
Q Consensus       178 ~sR~~~  183 (248)
                      .+|+..
T Consensus       170 ~d~i~~  175 (213)
T PRK15177        170 CHAFGV  175 (213)
T ss_pred             cCeeEE
Confidence            677643

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.22  E-value=7.7e-11  Score=97.16  Aligned_cols=57  Identities=9%  Similarity=0.119  Sum_probs=44.8

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ..+|+++|+||| ..||+.....+.++|.+......+|++|++...+ ..+.+|..++.
T Consensus       177 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~-~~~~d~i~~l~  234 (274)
T PRK14265        177 AMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQA-SRVADWTAFFN  234 (274)
T ss_pred             hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEe
Confidence            458999999999 8999999999999999876556677777775544 46667776654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.22  E-value=2.4e-11  Score=97.19  Aligned_cols=141  Identities=17%  Similarity=0.200  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (248)
                      .+++.++..+..|...+  |.|.+||||||++|++.+ |..+.+|.+...|.++.....                     
T Consensus        27 ~avd~Vsf~i~~ge~~g--lVGESG~GKSTlgr~i~~-L~~pt~G~i~f~g~~i~~~~~---------------------   82 (268)
T COG4608          27 KAVDGVSFSIKEGETLG--LVGESGCGKSTLGRLILG-LEEPTSGEILFEGKDITKLSK---------------------   82 (268)
T ss_pred             EEecceeEEEcCCCEEE--EEecCCCCHHHHHHHHHc-CcCCCCceEEEcCcchhhcch---------------------
Confidence            35556666666766555  999999999999999998 889999999888875441110                     


Q ss_pred             CCcCcchhHHHHHHHHH------HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-
Q 025758          100 SDAGFQDRYVVQEVIKE------MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-  159 (248)
Q Consensus       100 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-  159 (248)
                          ......+.+.+..      ....+|..+|+            .-+|++++.||+ .++|...+..++.++.+... 
T Consensus        83 ----~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~  158 (268)
T COG4608          83 ----EERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE  158 (268)
T ss_pred             ----hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH
Confidence                0011112233222      33344555553            227899999999 88999999999999887643 


Q ss_pred             -CeeEEEEecCCCcccHHHhhhhheeeecCC
Q 025758          160 -SCRLILCCNSSSKVTEAIRSRCLNIRINSP  189 (248)
Q Consensus       160 -~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~  189 (248)
                       +...++||++. .+...+.+|..+......
T Consensus       159 ~~lt~lFIsHDL-~vv~~isdri~VMy~G~i  188 (268)
T COG4608         159 LGLTYLFISHDL-SVVRYISDRIAVMYLGKI  188 (268)
T ss_pred             hCCeEEEEEEEH-HhhhhhcccEEEEecCce
Confidence             45788888875 344466667655444433

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=3.7e-11  Score=99.66  Aligned_cols=160  Identities=17%  Similarity=0.316  Sum_probs=93.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC---C--cccccceee-------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---S--RNIDLELTT-------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~-------   88 (248)
                      +++.+...+..|..  +.|.||||+||||+++++++ +..+..|.+.++|..+.....   .  ....+-.+.       
T Consensus        22 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~   98 (287)
T PRK13637         22 ALDNVNIEIEDGEF--VGLIGHTGSGKSTLIQHLNG-LLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE   98 (287)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence            45555555555543  66999999999999999998 678899999998876542110   0  000000000       


Q ss_pred             ecccceeeeCCCCcCcchh---HHHHHHHHHHH-------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHH
Q 025758           89 LSSANHVELSPSDAGFQDR---YVVQEVIKEMA-------KNRPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~  145 (248)
                      .++.+.+.+.....+....   ..+.+.++.+.       ...+..+|+            ..+|+++|+||| ..||+.
T Consensus        99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~  178 (287)
T PRK13637         99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK  178 (287)
T ss_pred             ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence            0111111111111111111   11223333211       122233442            458999999999 899999


Q ss_pred             HHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          146 AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       146 ~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+..+++++.+...  +..+|++|++... ...+.+|+.++
T Consensus       179 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~drv~~l  218 (287)
T PRK13637        179 GRDEILNKIKELHKEYNMTIILVSHSMED-VAKLADRIIVM  218 (287)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            99999999988754  4567777777544 44667887544

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.22  E-value=7e-12  Score=124.86  Aligned_cols=132  Identities=18%  Similarity=0.166  Sum_probs=81.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhH--------
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--------  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  108 (248)
                      +.|.||||+||||+++++++ +..+++|.+.++|.++.......           ...+++.+......+..        
T Consensus      1968 ~gLLG~NGAGKTTLlkmL~G-ll~ptsG~I~i~G~~i~~~~~~~-----------r~~IGy~pQ~~~L~~~LTv~E~L~l 2035 (2272)
T TIGR01257      1968 FGLLGVNGAGKTTTFKMLTG-DTTVTSGDATVAGKSILTNISDV-----------HQNMGYCPQFDAIDDLLTGREHLYL 2035 (2272)
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECcchHHHH-----------hhhEEEEeccccCCCCCCHHHHHHH
Confidence            66999999999999999999 67899999999987653110000           01122222211111111        


Q ss_pred             --------------HHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758          109 --------------VVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (248)
Q Consensus       109 --------------~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~  156 (248)
                                    .+.+.++.     ..+.....+|+            .++|+|+++||| .+||+..+..++++|.+
T Consensus      2036 ~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257      2036 YARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence                          11122211     11222223332            458999999999 89999999999999988


Q ss_pred             hcC-CeeEEEEecCCCcccHHHhhhh
Q 025758          157 YSA-SCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       157 ~~~-~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ..+ +..+|++||+.+ ..+.+++|+
T Consensus      2116 l~~~g~TIILtTH~me-e~e~lcDrV 2140 (2272)
T TIGR01257      2116 IIREGRAVVLTSHSME-ECEALCTRL 2140 (2272)
T ss_pred             HHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence            643 445666666654 334555554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=6.1e-11  Score=97.07  Aligned_cols=160  Identities=15%  Similarity=0.154  Sum_probs=89.5

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----CcccceecccceeeccCC---ccccccee------
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDAGS---RNIDLELT------   87 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~------   87 (248)
                      ++.+...+.+|.  .+.+.||||+|||||++++++ +..+     ..|.+.++|.++......   ........      
T Consensus        24 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~  100 (261)
T PRK14263         24 VRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNR-MNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP  100 (261)
T ss_pred             EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHc-ccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence            334444444443  367999999999999999998 4443     678888888755310000   00000000      


Q ss_pred             -eecccceeeeCCCCcCcc--hhHHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758           88 -TLSSANHVELSPSDAGFQ--DRYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (248)
Q Consensus        88 -~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d~l  142 (248)
                       ..+..+++.+........  ....+.+.++.+.         ......+++            ..+|+++++||| ..|
T Consensus       101 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgL  180 (261)
T PRK14263        101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSAL  180 (261)
T ss_pred             ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence             001111111110000000  0112233332211         111223442            458999999999 899


Q ss_pred             CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758          143 SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       143 ~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      |+..+..+++++.+...+..+|++|++... ...+.+|+.++.
T Consensus       181 D~~~~~~l~~~l~~~~~~~tii~isH~~~~-i~~~~d~v~~l~  222 (261)
T PRK14263        181 DPIATRRVEELMVELKKDYTIALVTHNMQQ-AIRVADTTAFFS  222 (261)
T ss_pred             CHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHHhCCEEEEEe
Confidence            999999999999988655667777777554 457778876664

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=1.5e-11  Score=101.37  Aligned_cols=160  Identities=16%  Similarity=0.188  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC-----CcccceecccceeeccC--Ccccccceee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-----GAEKVKVENKTWKIDAG--SRNIDLELTT-----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----   88 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+     ..|.+.+++.++.....  .......+..     
T Consensus        36 il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~G-l~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l  112 (276)
T PRK14271         36 VLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNR-MNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP  112 (276)
T ss_pred             EeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhc-cCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence            4444444554443  367999999999999999998 4443     58888888865431000  0000000000     


Q ss_pred             --ecccceeeeCCCCcCcchhHH----HHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           89 --LSSANHVELSPSDAGFQDRYV----VQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        89 --~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                        .+..+++.+............    +.+.++.+.         ...+..+|+            ..+|+++++||| .
T Consensus       113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~  192 (276)
T PRK14271        113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTS  192 (276)
T ss_pred             CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence              011111111000000000001    111222211         111223442            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .||...+..+.+.+.+......+|++|++.. ....+.+|+..+
T Consensus       193 ~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~-~~~~~~dri~~l  235 (276)
T PRK14271        193 ALDPTTTEKIEEFIRSLADRLTVIIVTHNLA-QAARISDRAALF  235 (276)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            9999999999999998765566777777755 444666777444

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=3.9e-11  Score=100.83  Aligned_cols=159  Identities=12%  Similarity=0.201  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc--------------C---Ccc--
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA--------------G---SRN--   81 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~--------------~---~~~--   81 (248)
                      +++.+...+..|.  .+.|.||||+|||||++++++ +..+.+|.+.++|..+....              .   ...  
T Consensus        41 ~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~G-l~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (320)
T PRK13631         41 ALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNG-LIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR  117 (320)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence            4555555555553  366999999999999999998 77889999999886553210              0   000  


Q ss_pred             cccceee-------ecccceeeeCCCCcCcchh---HHHHHHHHHH------HhcCCCcCCC------------CCCeeE
Q 025758           82 IDLELTT-------LSSANHVELSPSDAGFQDR---YVVQEVIKEM------AKNRPIDTKG------------KRGFKV  133 (248)
Q Consensus        82 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~------------~~~~~v  133 (248)
                      ..+-++.       .++.+++.+.+...+....   ..+.+.++.+      ....+..+|+            ..+|++
T Consensus       118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i  197 (320)
T PRK13631        118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI  197 (320)
T ss_pred             EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            0000000       0111111111111111111   1122222221      1222334443            458999


Q ss_pred             EEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          134 LVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       134 iiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +|+||| ..+|+.....+.+++.+... +..+|++||+.+. ...+.+|+.+
T Consensus       198 LLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~-~~~~adri~v  248 (320)
T PRK13631        198 LIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH-VLEVADEVIV  248 (320)
T ss_pred             EEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEE
Confidence            999999 89999999999999987643 4567777777654 3366677643

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=1.8e-11  Score=99.68  Aligned_cols=56  Identities=14%  Similarity=0.189  Sum_probs=43.6

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|+++++||| ..||+.....+.+.+.+...+..+|++||+... ...+.+|+..+
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~-~~~~~d~i~~l  220 (252)
T PRK14255        164 AVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ-ASRISDKTAFF  220 (252)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHH-HHHhCCEEEEE
Confidence            458999999999 899999999999999887655667777777654 44566776443

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=5.3e-11  Score=97.29  Aligned_cols=160  Identities=16%  Similarity=0.233  Sum_probs=87.9

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-----CCcccceecccceeeccCC--c-ccccceee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-----PGAEKVKVENKTWKIDAGS--R-NIDLELTT----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-----~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~----   88 (248)
                      +++.+...+..|.  .+.|.||||+||||+++++++ +..     +.+|.+.++|.........  . .....+..    
T Consensus        27 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-l~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  103 (258)
T PRK14268         27 ALKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNR-MNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN  103 (258)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence            4444444455543  367999999999999999998 443     3688888888654310000  0 00000000    


Q ss_pred             ---ecccceeeeCCCCcCcchh---HHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           89 ---LSSANHVELSPSDAGFQDR---YVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                         .+..+++.+.....+....   ..+.+.++.+.         ......+|+            ..+|+++++||| .
T Consensus       104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~  183 (258)
T PRK14268        104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS  183 (258)
T ss_pred             cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence               0000111110000000000   01222232221         112223332            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+|+.....+.+++.+...+..+|++|++...+ ..+.+|+.++
T Consensus       184 ~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~-~~~~d~i~~l  226 (258)
T PRK14268        184 ALDPISTARIEDLIMNLKKDYTIVIVTHNMQQA-ARISDYTGFF  226 (258)
T ss_pred             ccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH-HHhCCEEEEE
Confidence            999999999999998876556677777775543 4666776544

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=1.9e-11  Score=101.42  Aligned_cols=159  Identities=15%  Similarity=0.264  Sum_probs=92.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-----cc--cccceee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RN--IDLELTT-----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~-----   88 (248)
                      +++.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|..+......     ..  ..+-++.     
T Consensus        22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~L~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l   98 (286)
T PRK13646         22 AIHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINA-LLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL   98 (286)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence            4555555555553  366999999999999999998 6788999999988755311100     00  0000000     


Q ss_pred             --ecccceeeeCCCCcCcchh---HHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758           89 --LSSANHVELSPSDAGFQDR---YVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (248)
Q Consensus        89 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (248)
                        .++.+++.+.+...+....   ..+.++++.+.      ...+..+|+            ..+|+++++||| ..||+
T Consensus        99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~  178 (286)
T PRK13646         99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP  178 (286)
T ss_pred             chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence              0111222221111111111   11222222221      112233442            458999999999 89999


Q ss_pred             HHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       145 ~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .....+++++.+...  +..+|++|++.+.+ ..+.+|+.+
T Consensus       179 ~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~-~~~~dri~~  218 (286)
T PRK13646        179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEV-ARYADEVIV  218 (286)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HHhCCEEEE
Confidence            999999999988742  46777777776644 456677743

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.2e-10  Score=94.20  Aligned_cols=174  Identities=17%  Similarity=0.260  Sum_probs=106.4

Q ss_pred             CCCcccccccHHHHHHHHHHhh----------c-C-CCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVT----------E-Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~----------~-~-~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~   75 (248)
                      -.+|+++-|.......|..-+.          . | ++|- ++|+||||+|||.+|+++|..+.+.-             
T Consensus       128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf-------------  194 (388)
T KOG0651|consen  128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF-------------  194 (388)
T ss_pred             ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce-------------
Confidence            3478888887777777776542          1 1 2333 89999999999999999999762211             


Q ss_pred             ccCCcccccceeeecccceeeeCCCCc-Cc---chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------
Q 025758           76 DAGSRNIDLELTTLSSANHVELSPSDA-GF---QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------  143 (248)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------  143 (248)
                                         +-+..+.. +.   .+...+++.+++...         ..+.++++||+|...        
T Consensus       195 -------------------l~v~ss~lv~kyiGEsaRlIRemf~yA~~---------~~pciifmdeiDAigGRr~se~T  246 (388)
T KOG0651|consen  195 -------------------LKVVSSALVDKYIGESARLIRDMFRYARE---------VIPCIIFMDEIDAIGGRRFSEGT  246 (388)
T ss_pred             -------------------EEeeHhhhhhhhcccHHHHHHHHHHHHhh---------hCceEEeehhhhhhccEEecccc
Confidence                               11111110 11   122234555555443         356899999998752        


Q ss_pred             ---HHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcC--CCCC
Q 025758          144 ---REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEG--LQLP  210 (248)
Q Consensus       144 ---~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~--~~~~  210 (248)
                         ...+..|..++++.     ...+++|+++|+++.+.++|..-.   ..+..|.|.......+++-....-.  -.++
T Consensus       247 s~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid  326 (388)
T KOG0651|consen  247 SSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID  326 (388)
T ss_pred             chhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc
Confidence               34566666666543     234789999999999999997644   4566677776666655543322211  1355


Q ss_pred             HHHHHHHHHHccc
Q 025758          211 SGFATRLAEKSNR  223 (248)
Q Consensus       211 ~~~~~~l~~~~~g  223 (248)
                      .+.+-.+.+.++|
T Consensus       327 ~eaivK~~d~f~g  339 (388)
T KOG0651|consen  327 DEAILKLVDGFNG  339 (388)
T ss_pred             HHHHHHHHhccCh
Confidence            5555555554443

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.21  E-value=6e-11  Score=101.52  Aligned_cols=144  Identities=17%  Similarity=0.249  Sum_probs=83.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc----eeeccCC-------cccccceee------ecccceeeeCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT----WKIDAGS-------RNIDLELTT------LSSANHVELSP   99 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~------~~~~~~~~~~~   99 (248)
                      +.|.||||+|||||++++++ +..+.+|.+.++|..    .....+.       ....+-++.      .++.+++.+..
T Consensus        53 ~~I~G~nGsGKSTLlr~L~G-l~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~  131 (382)
T TIGR03415        53 CVLMGLSGSGKSSLLRAVNG-LNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGL  131 (382)
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHH
Confidence            78999999999999999998 778999999998852    2100000       000000000      01111111110


Q ss_pred             CCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758          100 SDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus       100 ~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~  158 (248)
                      ...+....   ..+.+.++.+     ....+..+|+            ..+|+|+++||+ ..||+..+..+.+.+.+..
T Consensus       132 ~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~  211 (382)
T TIGR03415       132 EMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQ  211 (382)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence            00011100   1122222221     1122233442            458999999999 8999999999999998775


Q ss_pred             C--CeeEEEEecCCCcccHHHhhhhh
Q 025758          159 A--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       159 ~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      .  +..+|++||+.+.+ ..+.+|+.
T Consensus       212 ~~~~~TII~iTHdl~e~-~~l~DrI~  236 (382)
T TIGR03415       212 AKLNKTIIFVSHDLDEA-LKIGNRIA  236 (382)
T ss_pred             HhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence            4  45788888876654 46777773

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=4.7e-11  Score=97.69  Aligned_cols=161  Identities=15%  Similarity=0.247  Sum_probs=88.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC-C---CcccceecccceeeccCC--c-ccccceee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG-P---GAEKVKVENKTWKIDAGS--R-NIDLELTT-----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~-~---~~~~~~~~~~~~~~~~~~--~-~~~~~~~~-----   88 (248)
                      +++.+...+.+|.  .+.|.||||+|||||++++++.+.. +   ..|.+.++|.+.......  . .....+..     
T Consensus        27 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~  104 (259)
T PRK14274         27 ALKNINLSIPENE--VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP  104 (259)
T ss_pred             eEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence            4444444555543  3679999999999999999994421 3   478888888654310000  0 00000000     


Q ss_pred             --ecccceeeeCCCCcCc-chh---HHHHHHHHHHH---------hcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           89 --LSSANHVELSPSDAGF-QDR---YVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        89 --~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~---------~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                        .+..+++.+.....+. ...   ..+.+.++.+.         ......+|+            ..+|+++++||| .
T Consensus       105 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~  184 (259)
T PRK14274        105 FPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTS  184 (259)
T ss_pred             cccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence              0111111111100010 000   11122222211         112223332            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .||+.....+.+++.+...+..+|++||+.. ....+.+|+..+
T Consensus       185 ~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~-~~~~~~d~i~~l  227 (259)
T PRK14274        185 ALDPVSTRKIEELILKLKEKYTIVIVTHNMQ-QAARVSDQTAFF  227 (259)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhCCEEEEE
Confidence            9999999999999998765566777777755 444666776544

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.21  E-value=2.6e-11  Score=99.36  Aligned_cols=161  Identities=15%  Similarity=0.234  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC---cccceecccceeecc--C----C--ccccccee
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG---AEKVKVENKTWKIDA--G----S--RNIDLELT   87 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~---~~~~~~~~~~~~~~~--~----~--~~~~~~~~   87 (248)
                      ..+++.+...+..|.  .+.|.||||+||||+++++++ +..+.   +|.+.++|.......  +    .  ....+-.+
T Consensus        17 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G-~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q   93 (262)
T PRK09984         17 HQALHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSG-LITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQ   93 (262)
T ss_pred             eEEEecceEEEcCCc--EEEEECCCCCCHHHHHHHHhc-cCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcc
Confidence            334555555555553  367999999999999999998 44543   488888886543110  0    0  00000000


Q ss_pred             ------eecccceeeeCCCCc--------Cc-c--hhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeE
Q 025758           88 ------TLSSANHVELSPSDA--------GF-Q--DRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKV  133 (248)
Q Consensus        88 ------~~~~~~~~~~~~~~~--------~~-~--~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~v  133 (248)
                            ..++.+++.+.....        +. .  ....+.+.++.+     ....+..+|+            ..+|++
T Consensus        94 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  173 (262)
T PRK09984         94 QFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKV  173 (262)
T ss_pred             ccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCE
Confidence                  001111111110000        00 0  011223333222     1223334442            458999


Q ss_pred             EEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          134 LVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       134 iiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +++||| ..||......+.+.|.+...  +..+|++|++... ...+.+|+..
T Consensus       174 lllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~~  225 (262)
T PRK09984        174 ILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVA  225 (262)
T ss_pred             EEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            999999 89999999999999998753  4567777777654 3466677643

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.20  E-value=8e-12  Score=124.45  Aligned_cols=143  Identities=20%  Similarity=0.286  Sum_probs=83.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc--------eeeecccceeeeCCCCcCcch--
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE--------LTTLSSANHVELSPSDAGFQD--  106 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--  106 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.++|.++.......+....        +...++.+++.+.....+...  
T Consensus       959 ~aLLG~NGAGKSTLLkiLaG-Ll~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~ 1037 (2272)
T TIGR01257       959 TAFLGHNGAGKTTTLSILTG-LLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEE 1037 (2272)
T ss_pred             EEEECCCCChHHHHHHHHhc-CCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHH
Confidence            66999999999999999998 7789999999998765311000000000        001111122221110011111  


Q ss_pred             -hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEe
Q 025758          107 -RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCC  167 (248)
Q Consensus       107 -~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t  167 (248)
                       ...+.+.++.+     ....+..+|+            ..+++|+++||| .+||+..+..+++++.+...+..+|++|
T Consensus      1038 ~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltT 1117 (2272)
T TIGR01257      1038 AQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMST 1117 (2272)
T ss_pred             HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence             11122223221     1122233442            458999999999 8999999999999999886555677777


Q ss_pred             cCCCcccHHHhhhh
Q 025758          168 NSSSKVTEAIRSRC  181 (248)
Q Consensus       168 ~~~~~~~~~l~sR~  181 (248)
                      |+.+ ....+.+|+
T Consensus      1118 Hdmd-ea~~laDrI 1130 (2272)
T TIGR01257      1118 HHMD-EADLLGDRI 1130 (2272)
T ss_pred             CCHH-HHHHhCCEE
Confidence            7653 223444443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.20  E-value=1.1e-11  Score=110.37  Aligned_cols=159  Identities=13%  Similarity=0.228  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----ccccccee------eec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELT------TLS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~~   90 (248)
                      +.+.+...+.+|.  .+.|.||||+|||||++++++ +..+.+|.+.++|.++....+.    ....+-.+      ..+
T Consensus        13 il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   89 (491)
T PRK10982         13 ALDNVNLKVRPHS--IHALMGENGAGKSTLLKCLFG-IYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS   89 (491)
T ss_pred             eeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcC-CCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence            4455555555554  366999999999999999998 6688899999888654311100    00000000      011


Q ss_pred             ccceeeeCCC-CcC--cchh---HHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           91 SANHVELSPS-DAG--FQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        91 ~~~~~~~~~~-~~~--~~~~---~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      +.+++.+... ..+  ....   ..+.+.++.+.     ......+|+            ..+|+++|+||| ..+|+..
T Consensus        90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~  169 (491)
T PRK10982         90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE  169 (491)
T ss_pred             HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence            1122221110 001  0111   11223333221     111223442            448999999999 8999999


Q ss_pred             HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ...+.+++.+... +..+|++||+.+. ...+.+|+.+
T Consensus       170 ~~~l~~~l~~l~~~g~tvii~tH~~~~-~~~~~d~i~~  206 (491)
T PRK10982        170 VNHLFTIIRKLKERGCGIVYISHKMEE-IFQLCDEITI  206 (491)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEE
Confidence            9999999988743 3467777776544 3466677643

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.20  E-value=7e-11  Score=97.09  Aligned_cols=160  Identities=16%  Similarity=0.250  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc--cccceeeecccceeeeC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN--IDLELTTLSSANHVELS   98 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   98 (248)
                      +.+.+...+.+|.  .+.|.||||+|||||++++++ +..+.+|.+.+++..+....+...  .......+.......+.
T Consensus        27 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~  103 (268)
T PRK10419         27 VLNNVSLSLKSGE--TVALLGRSGCGKSTLARLLVG-LESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN  103 (268)
T ss_pred             eEeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence            4555555665553  477999999999999999998 668889999998865431111000  00000000000000000


Q ss_pred             CCC-------------cCcch---hHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           99 PSD-------------AGFQD---RYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        99 ~~~-------------~~~~~---~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +..             .....   ...+.+.+..+      .......+|+            ..+|+++++||| ..||
T Consensus       104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD  183 (268)
T PRK10419        104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD  183 (268)
T ss_pred             CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence            000             00000   01122223221      1112223342            458999999999 7999


Q ss_pred             HHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ...+..+.+.+++...  +..+|++|++.. ....+.+|+..+
T Consensus       184 ~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l  225 (268)
T PRK10419        184 LVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVM  225 (268)
T ss_pred             HHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEE
Confidence            9999999999988753  456777777754 444666776443

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=5.7e-11  Score=98.70  Aligned_cols=160  Identities=17%  Similarity=0.227  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec--c--C--Ccccccceeee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID--A--G--SRNIDLELTTL-----   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~--~--~--~~~~~~~~~~~-----   89 (248)
                      +++.+...+..|.  .+.|.||||+|||||++++++ +..+.+|.+.++|.++...  .  .  .......+..-     
T Consensus        26 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~  102 (289)
T PRK13645         26 ALNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNG-LIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ  102 (289)
T ss_pred             eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence            4445555555553  367999999999999999998 6688889998888654310  0  0  00000000000     


Q ss_pred             ----cccceeeeCCCCcCcchh---HHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           90 ----SSANHVELSPSDAGFQDR---YVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        90 ----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                          ++.+++.+.....+....   ..+.+.++.+      .......+|+            ..+|+++++||| ..||
T Consensus       103 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD  182 (289)
T PRK13645        103 LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD  182 (289)
T ss_pred             hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence                011111110000011110   1112222211      1111223332            448999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.....+++++.+..+  +..+|++||+.+ ....+.+|+..+
T Consensus       183 ~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l  224 (289)
T PRK13645        183 PKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVM  224 (289)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence            9999999999987743  456777777765 345666777443

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.20  E-value=1.6e-11  Score=109.35  Aligned_cols=162  Identities=14%  Similarity=0.077  Sum_probs=91.2

Q ss_pred             ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceeeeccc-ce
Q 025758           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLSSA-NH   94 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~   94 (248)
                      +...+++.+...+.+|..  +.|.||||+|||||++++++ +..+.+|.+.+++.......... ............ ..
T Consensus        14 ~~~~il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~G-~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   90 (490)
T PRK10938         14 SDTKTLQLPSLTLNAGDS--WAFVGANGSGKSALARALAG-ELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDM   90 (490)
T ss_pred             CCeeecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-cCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhh
Confidence            333456666666666543  66999999999999999998 66788898887665432110000 000000000000 00


Q ss_pred             -------eeeCCCCc---CcchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           95 -------VELSPSDA---GFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        95 -------~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                             ........   .......+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~  170 (490)
T PRK10938         91 LSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVAS  170 (490)
T ss_pred             cccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence                   00000000   000111222333222     2223334553            448999999999 8999999


Q ss_pred             HHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh
Q 025758          147 QHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       147 ~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      ...+.+++.+.... ..+|++||+... ...+.+|..
T Consensus       171 ~~~l~~~l~~~~~~g~tvii~tH~~~~-~~~~~d~v~  206 (490)
T PRK10938        171 RQQLAELLASLHQSGITLVLVLNRFDE-IPDFVQFAG  206 (490)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhCCEEE
Confidence            99999999887543 467777776543 446667764

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=3.9e-11  Score=98.97  Aligned_cols=159  Identities=16%  Similarity=0.283  Sum_probs=90.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC---cccccc--eee-------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLE--LTT-------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~-------   88 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.++|.++......   ......  .+.       
T Consensus        17 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   93 (275)
T PRK13639         17 ALKGINFKAEKGE--MVALLGPNGAGKSTLFLHFNG-ILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA   93 (275)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence            4445555555553  366999999999999999998 6688899999988765311000   000000  000       


Q ss_pred             ecccceeeeCCCCcCcch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHH
Q 025758           89 LSSANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (248)
                      .++.+++.+.....+...   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..+
T Consensus        94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~  173 (275)
T PRK13639         94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA  173 (275)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence            011111111000000000   01122222221     1122223332            458999999999 89999999


Q ss_pred             HHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       148 ~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ..+.+++.+... +..+|++|++.+. ...+.+|+..
T Consensus       174 ~~l~~~l~~l~~~~~til~vtH~~~~-~~~~~d~i~~  209 (275)
T PRK13639        174 SQIMKLLYDLNKEGITIIISTHDVDL-VPVYADKVYV  209 (275)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEE
Confidence            999999988754 4567777777554 4466777743

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=4.4e-11  Score=99.20  Aligned_cols=56  Identities=11%  Similarity=0.228  Sum_probs=43.7

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+++++|+||| ..||+.....+.+.+.+...+..+|++||+...+ ..+.+|+.++
T Consensus       198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~-~~~~d~i~~L  254 (286)
T PRK14275        198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQA-SRVSDYTMFF  254 (286)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH-HHhCCEEEEE
Confidence            458999999999 8999999999999998876555677777765544 4667777544

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.20  E-value=4.8e-11  Score=93.21  Aligned_cols=182  Identities=15%  Similarity=0.226  Sum_probs=107.4

Q ss_pred             ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc-----------CCcccccc
Q 025758           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-----------GSRNIDLE   85 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~   85 (248)
                      +...+++.+...+..|.  .+.+.||+|+|||||.|++.+ +..+..|.+.+++.+.....           +..+..+.
T Consensus        15 ~~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lng-l~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n   91 (258)
T COG3638          15 GGHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNG-LVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN   91 (258)
T ss_pred             CCceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhc-ccCCCcceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence            45555555555565554  466999999999999999999 78899999988886443111           11111111


Q ss_pred             eee-ecccce-----eeeCC---CCcCcchhHHHHHHHHHH--------HhcCCCcCCC------------CCCeeEEEE
Q 025758           86 LTT-LSSANH-----VELSP---SDAGFQDRYVVQEVIKEM--------AKNRPIDTKG------------KRGFKVLVL  136 (248)
Q Consensus        86 ~~~-~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------------~~~~~viii  136 (248)
                      +.. .++..+     +++.+   .-.+..+.+.....+..+        +..+...+|+            .+++++|+-
T Consensus        92 Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILA  171 (258)
T COG3638          92 LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA  171 (258)
T ss_pred             cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEec
Confidence            100 000000     01100   011112222222222222        1122234443            458999999


Q ss_pred             eCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhh-----eeeecCCCHHHHHHHHHHH
Q 025758          137 NEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL-----NIRINSPTEEQIVKVLEFI  201 (248)
Q Consensus       137 DE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~-----~i~~~~~~~~~~~~il~~~  201 (248)
                      ||| ..|||.....+.+.+.+...+ +..++++-|.-++...+.+|+.     .+.|+.|..+--.+.+..+
T Consensus       172 DEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~~~~~i  243 (258)
T COG3638         172 DEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDEI  243 (258)
T ss_pred             CCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHHHHHHH
Confidence            999 899999988888888776433 4555565566677778889983     5788888776555555543

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.20  E-value=3.5e-11  Score=108.16  Aligned_cols=143  Identities=15%  Similarity=0.216  Sum_probs=86.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--------cccccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--------RNIDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~   92 (248)
                      +++.+...+++|+  .+.+.||+|+||||+++++++ +..+..|.+.++|.++... ..        ..+...+-..+..
T Consensus       350 vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~  425 (529)
T TIGR02868       350 VLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTG-LLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVR  425 (529)
T ss_pred             eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHH
Confidence            4555555555553  366999999999999999998 7899999999999765411 10        0000000011112


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+..++   .+.+.+.+.++.     +...-           ...+|+            -++++++++||+ ..+|
T Consensus       426 eNI~~g~~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD  502 (529)
T TIGR02868       426 DNLRLGRPD---ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLD  502 (529)
T ss_pred             HHHhccCCC---CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            222221111   111122222221     11111           112332            448999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCC
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSS  170 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~  170 (248)
                      +.....+.+.+++..++.++|++||++
T Consensus       503 ~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       503 AGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            999999999999876777888888863

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=1.3e-10  Score=94.66  Aligned_cols=56  Identities=13%  Similarity=0.219  Sum_probs=43.5

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+++++++||| ..||+.....+.+.|.+...+..+|++|++... ...+.+|+.++
T Consensus       165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~-~~~~~d~i~~l  221 (251)
T PRK14244        165 AVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQ-AKKVSDRVAFF  221 (251)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhcCEEEEE
Confidence            458999999999 899999999999999887655667777777653 44666776444

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.20  E-value=1e-10  Score=96.35  Aligned_cols=162  Identities=12%  Similarity=0.150  Sum_probs=88.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC----CCcccceecccceeeccC---Ccccccceeee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG----PGAEKVKVENKTWKIDAG---SRNIDLELTTL----   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----   89 (248)
                      +.+.+...+.+|.  .+.+.||||+||||+++++++.+..    +.+|.+.++|.+......   .......+..-    
T Consensus        40 il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l  117 (272)
T PRK14236         40 ALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP  117 (272)
T ss_pred             EeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence            4444444454443  3679999999999999999994331    468988888865431000   00000000000    


Q ss_pred             ---cccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           90 ---SSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                         +..+++.+.....+...    ...+.+.++.+         .......+|+            ..+++++++||| .
T Consensus       118 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~  197 (272)
T PRK14236        118 FPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS  197 (272)
T ss_pred             CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence               11111111000001000    01122222221         1112233442            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      .||+..+..+.+++.+......+|++|++... ...+.+|+..+.
T Consensus       198 gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~-~~~~~d~i~~l~  241 (272)
T PRK14236        198 ALDPISTLKIEELITELKSKYTIVIVTHNMQQ-AARVSDYTAFMY  241 (272)
T ss_pred             cCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH-HHhhCCEEEEEE
Confidence            99999999999999887655667777777554 345667775443

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.19  E-value=1.3e-10  Score=94.65  Aligned_cols=160  Identities=16%  Similarity=0.217  Sum_probs=87.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-----cccceecccceeeccCCc-ccccceeee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-----AEKVKVENKTWKIDAGSR-NIDLELTTL-----   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----   89 (248)
                      +.+.+...+.+|.  .+.|.||||+|||||++++++ +..+.     .|.+.+++.......... ........+     
T Consensus        19 il~~~s~~i~~G~--~~~i~G~nGsGKSTLl~~l~G-l~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~   95 (251)
T PRK14249         19 VLKNINMDFPERQ--ITAIIGPSGCGKSTLLRALNR-MNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN   95 (251)
T ss_pred             EecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-ccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence            4455555555553  367999999999999999998 44554     588888876542100000 000001000     


Q ss_pred             ----cccceeeeCCCCcCcchh----HHHHHHHHH---------HHhcCCCcCCC------------CCCeeEEEEeCC-
Q 025758           90 ----SSANHVELSPSDAGFQDR----YVVQEVIKE---------MAKNRPIDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        90 ----~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------~~~~~~~~~~~------------~~~~~viiiDE~-  139 (248)
                          +..+++.+.....+....    ..+.+.+..         ........+|+            ..+|+++++||| 
T Consensus        96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt  175 (251)
T PRK14249         96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC  175 (251)
T ss_pred             cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                011111111100000000    011111111         11222333442            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..||+.....+.+++.+......+|++||+...+. .+.+|...+
T Consensus       176 ~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~-~~~d~i~~l  219 (251)
T PRK14249        176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAA-RASDWTGFL  219 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hhCCEEEEE
Confidence            79999999999999988754566777777655444 555676444

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=7.8e-10  Score=97.60  Aligned_cols=174  Identities=19%  Similarity=0.275  Sum_probs=115.6

Q ss_pred             ccccccHHHHHHHHHHhh------------cCC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758           13 DQVIVHQDIAQNLKKLVT------------EQD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~------------~~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      .++.|.......++..+.            +-+ ..+++++||||+|||-+++++|++..+   ....+++         
T Consensus       184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a---~~~~i~~---------  251 (693)
T KOG0730|consen  184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA---FLFLING---------  251 (693)
T ss_pred             cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc---eeEeccc---------
Confidence            455666666666665542            112 234999999999999999999986521   1111111         


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH----------HHHHH
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------EAQHS  149 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------~~~~~  149 (248)
                                  +..+...+.+    .....+..+.......        -|.+++|||+|.+-+          .....
T Consensus       252 ------------peli~k~~gE----te~~LR~~f~~a~k~~--------~psii~IdEld~l~p~r~~~~~~e~Rv~sq  307 (693)
T KOG0730|consen  252 ------------PELISKFPGE----TESNLRKAFAEALKFQ--------VPSIIFIDELDALCPKREGADDVESRVVSQ  307 (693)
T ss_pred             ------------HHHHHhcccc----hHHHHHHHHHHHhccC--------CCeeEeHHhHhhhCCcccccchHHHHHHHH
Confidence                        1011111111    1112344444444322        278999999998854          23456


Q ss_pred             HHHHHHHhc--CCeeEEEEecCCCcccHHHhh-hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccc
Q 025758          150 LRRTMEKYS--ASCRLILCCNSSSKVTEAIRS-RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR  223 (248)
Q Consensus       150 ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s-R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g  223 (248)
                      ++++++...  ....+|.++|++..+.++++. |+ ..+.+.-|+..+..+++.....+-++. ++..+..++..+.|
T Consensus       308 lltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thG  384 (693)
T KOG0730|consen  308 LLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHG  384 (693)
T ss_pred             HHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccc
Confidence            888888765  445677778999999999986 77 689999999999999999988887766 66778888877655

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.19  E-value=1.1e-10  Score=96.22  Aligned_cols=156  Identities=13%  Similarity=0.177  Sum_probs=87.2

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------ecccc
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSAN   93 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~   93 (248)
                      ++.+...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.............+-.+.        ....+
T Consensus        23 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~   99 (272)
T PRK15056         23 LRDASFTVPGGS--IAALVGVNGSGKSTLFKALMG-FVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED   99 (272)
T ss_pred             EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence            334444444442  477999999999999999998 6678899999888654210000000000000        00111


Q ss_pred             eeeeCC-CCcC------cchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHH
Q 025758           94 HVELSP-SDAG------FQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (248)
Q Consensus        94 ~~~~~~-~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (248)
                      .+.+.. ...+      ......+.+.++.+     .......+|+            ..+|+++++||| ..||+....
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~  179 (272)
T PRK15056        100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA  179 (272)
T ss_pred             heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            111100 0000      00111122333222     1222334442            448999999999 899999999


Q ss_pred             HHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhh
Q 025758          149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       149 ~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      .+.+++.+... +..+|++||+...+ ..+.+|+
T Consensus       180 ~l~~~L~~~~~~g~tviivsH~~~~~-~~~~d~v  212 (272)
T PRK15056        180 RIISLLRELRDEGKTMLVSTHNLGSV-TEFCDYT  212 (272)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEE
Confidence            99999988754 34677777765544 4566665

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.19  E-value=3.5e-11  Score=100.67  Aligned_cols=53  Identities=11%  Similarity=0.232  Sum_probs=41.6

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ..+|+++|+||| ..||+..+..+.++|.+...+..+|++||+... ...+.+|.
T Consensus       216 ~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~-i~~~~d~i  269 (305)
T PRK14264        216 AVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQ-AARISDQT  269 (305)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH-HHHhcCEE
Confidence            458999999999 899999999999999988666667777776554 34555663

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=4.5e-11  Score=100.78  Aligned_cols=161  Identities=16%  Similarity=0.225  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC----CCcccceecccceeeccC---Ccccccceee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG----PGAEKVKVENKTWKIDAG---SRNIDLELTT-----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----   88 (248)
                      +++.+...+.+|.  .+.|.||+|+||||+++++++....    +..|.+.++|.++.....   ..........     
T Consensus        97 ~L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~  174 (329)
T PRK14257         97 VLHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP  174 (329)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence            3344444444443  3779999999999999999985432    468999988876531000   0000000000     


Q ss_pred             --ecccceeeeCCCCcCcchhHH----HHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           89 --LSSANHVELSPSDAGFQDRYV----VQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        89 --~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                        .+..+++.+.+...+......    +.+.++..         .......+|+            ..+++|+++||| .
T Consensus       175 ~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts  254 (329)
T PRK14257        175 FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS  254 (329)
T ss_pred             CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence              011111111110000000100    11112211         1222233442            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+|+.....+.++|.+..++..+|++||+...+. .+.+|+.++
T Consensus       255 ~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~-~~~Driivl  297 (329)
T PRK14257        255 ALDPIATAKIEELILELKKKYSIIIVTHSMAQAQ-RISDETVFF  297 (329)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence            9999999999999988776677788877765544 566777544

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=1.5e-10  Score=95.98  Aligned_cols=158  Identities=14%  Similarity=0.180  Sum_probs=87.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC----CCcccceecccceeeccCC---cccccceeee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG----PGAEKVKVENKTWKIDAGS---RNIDLELTTL----   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----   89 (248)
                      +++.+...+.+|.  .+.|.||||+|||||++++++.+..    +..|.+.++|.........   ......+..-    
T Consensus        54 il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l  131 (285)
T PRK14254         54 ALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP  131 (285)
T ss_pred             eEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence            4445555555443  3679999999999999999984321    5789998888654311000   0000000000    


Q ss_pred             ---cccceeeeCCCCcCcc--hhHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758           90 ---SSANHVELSPSDAGFQ--DRYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (248)
Q Consensus        90 ---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d~l  142 (248)
                         +..+++.+.....+..  ....+.+.++.+         ....+..+|+            ..+++++|+||| ..|
T Consensus       132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~L  211 (285)
T PRK14254        132 FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL  211 (285)
T ss_pred             CcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence               0011111000000000  011122223222         1222334442            448999999999 899


Q ss_pred             CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          143 SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       143 ~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      |+.....+.++|.+......+|++||+.. ....+.+|+
T Consensus       212 D~~~~~~l~~~L~~~~~~~tiii~tH~~~-~i~~~~dri  249 (285)
T PRK14254        212 DPVATSKIEDLIEELAEEYTVVIVTHNMQ-QAARISDKT  249 (285)
T ss_pred             CHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEE
Confidence            99999999999998865566777777755 444566664

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.18  E-value=5.4e-11  Score=88.02  Aligned_cols=52  Identities=25%  Similarity=0.354  Sum_probs=40.3

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhc------------C-------CeeEEEEecCCC----cccHHHhhhh
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS------------A-------SCRLILCCNSSS----KVTEAIRSRC  181 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~------------~-------~~~~Il~t~~~~----~~~~~l~sR~  181 (248)
                      ++.+++|||++..++.....|+.++++..            .       +..+|.++|...    .+.+++++||
T Consensus        65 ~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf  139 (139)
T PF07728_consen   65 KGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF  139 (139)
T ss_dssp             EEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred             ceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence            67899999999999999999999997521            1       256888888887    7999999996

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=1.4e-10  Score=94.35  Aligned_cols=162  Identities=14%  Similarity=0.227  Sum_probs=89.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH--cCC--CcccceecccceeeccCC---cccccceeee----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV--FGP--GAEKVKVENKTWKIDAGS---RNIDLELTTL----   89 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l--~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----   89 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++..  ..+  ..|.+.++|.+.......   ......+...    
T Consensus        18 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~   95 (250)
T PRK14245         18 ALKGISMEIEEKS--VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP   95 (250)
T ss_pred             EEeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence            3444444555543  36799999999999999999832  232  478888888755311000   0000000000    


Q ss_pred             ---cccceeeeCCCCcCcch----hHHHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           90 ---SSANHVELSPSDAGFQD----RYVVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                         +..+++.+.....+...    ...+.+.++.+         .......+|+            ..+|+++++||| .
T Consensus        96 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~  175 (250)
T PRK14245         96 FPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS  175 (250)
T ss_pred             CcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence               01111111000000000    01122223322         1112223442            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      .||+.....+.+.+.+...+..+|++|++... ...+.+|+..+.
T Consensus       176 ~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~-~~~~~d~v~~l~  219 (250)
T PRK14245        176 ALDPISTAKVEELIHELKKDYTIVIVTHNMQQ-AARVSDKTAFFY  219 (250)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhCCEEEEEE
Confidence            99999999999999987655667777776554 446778875443

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.18  E-value=8.9e-11  Score=99.10  Aligned_cols=160  Identities=15%  Similarity=0.193  Sum_probs=92.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT--------   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------   88 (248)
                      +++.+...+..|.  .+.|.|++|+||||++++|++ +..+.+|.+.++|.++.......    .....+..        
T Consensus        36 ~l~~vsl~i~~Ge--~~~lvG~sGsGKSTLlk~i~G-l~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~  112 (331)
T PRK15079         36 AVDGVTLRLYEGE--TLGVVGESGCGKSTFARAIIG-LVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN  112 (331)
T ss_pred             EEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHC-CCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence            3444444455543  366999999999999999998 67888999999887653111000    00001000        


Q ss_pred             --ecccceeeeCC--CCcCcch---hHHHHHHHHH------HHhcCCCcCCC------------CCCeeEEEEeCC-CCC
Q 025758           89 --LSSANHVELSP--SDAGFQD---RYVVQEVIKE------MAKNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (248)
Q Consensus        89 --~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~------------~~~~~viiiDE~-d~l  142 (248)
                        .++.+++.+..  ...+...   ...+.+.++.      ....++..+|+            ..+|+++|+||+ ..|
T Consensus       113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L  192 (331)
T PRK15079        113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL  192 (331)
T ss_pred             CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence              00111111000  0000110   1112222322      23344455653            458999999999 899


Q ss_pred             CHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       143 ~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      |...+..+++++.+...  +..+|++||+.. ....+.+|+.++
T Consensus       193 D~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl  235 (331)
T PRK15079        193 DVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVM  235 (331)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            99999999999988744  456777777754 444666776433

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=99.17  E-value=3e-09  Score=94.31  Aligned_cols=195  Identities=15%  Similarity=0.190  Sum_probs=119.7

Q ss_pred             CcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (248)
                      .+.+++|.......+...+..  .....+++.|++||||+++|+.+...........+.+++.                 
T Consensus       136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~-----------------  198 (469)
T PRK10923        136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMA-----------------  198 (469)
T ss_pred             ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCC-----------------
Confidence            456788877666655554432  2233499999999999999999997432222222222221                 


Q ss_pred             ecccceeeeCCCCcCcchhHHHHHHHHHHHhc---------CCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-
Q 025758           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKN---------RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-  158 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-  158 (248)
                                  ...  . ......+  +...         ...+.........++|||++.|+...+..|++++++.. 
T Consensus       199 ------------~~~--~-~~~~~~l--fg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~  261 (469)
T PRK10923        199 ------------AIP--K-DLIESEL--FGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQF  261 (469)
T ss_pred             ------------CCC--H-HHHHHHh--cCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcE
Confidence                        110  0 0000000  0000         00011112344578999999999999999999998642 


Q ss_pred             ----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHH----HcC--C-CCC
Q 025758          159 ----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----KEG--L-QLP  210 (248)
Q Consensus       159 ----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~----~~~--~-~~~  210 (248)
                                .++++|++|+...       .+.+++..|+  ..|.+||+..  +++..++...+.    +.+  + .++
T Consensus       262 ~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~  341 (469)
T PRK10923        262 YRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLH  341 (469)
T ss_pred             EeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcC
Confidence                      1346888877542       4667788887  4677777653  444444444433    222  2 478


Q ss_pred             HHHHHHHHHH-ccccHHHHHHHHHHHhhhc
Q 025758          211 SGFATRLAEK-SNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       211 ~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~  239 (248)
                      ++++..|... ..||+|++.|.++.+....
T Consensus       342 ~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~  371 (469)
T PRK10923        342 PETEAALTRLAWPGNVRQLENTCRWLTVMA  371 (469)
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence            9999999876 4899999999999988643

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.17  E-value=3.7e-11  Score=113.38  Aligned_cols=158  Identities=19%  Similarity=0.241  Sum_probs=96.8

Q ss_pred             CcccccccHH-HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758           11 TLDQVIVHQD-IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (248)
Q Consensus        11 ~~~~lig~~~-~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (248)
                      ++....|... +++.+...++++..-+  +.||||+||||+.+++.+ ...+.+|.+.+.|.........         .
T Consensus       569 ~L~k~y~~~~~Av~~ls~~V~~gecfg--LLG~NGAGKtT~f~mltG-~~~~t~G~a~i~g~~i~~~~~~---------~  636 (885)
T KOG0059|consen  569 NLSKVYGGKDGAVRGLSFAVPPGECFG--LLGVNGAGKTTTFKMLTG-ETKPTSGEALIKGHDITVSTDF---------Q  636 (885)
T ss_pred             ceeeeecchhhhhcceEEEecCCceEE--EecCCCCCchhhHHHHhC-CccCCcceEEEecCccccccch---------h
Confidence            3444444444 6666666666665545  999999999999999998 6788999998877655421111         0


Q ss_pred             cccceeeeCCCCcCcchhHHHHHHHHHHHhcCC---------------------------CcCCC------------CCC
Q 025758           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP---------------------------IDTKG------------KRG  130 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~------------~~~  130 (248)
                      .+...++|-|..-...+..+.+|.+.-.+....                           ...++            .+.
T Consensus       637 ~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~  716 (885)
T KOG0059|consen  637 QVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGD  716 (885)
T ss_pred             hhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcC
Confidence            012224444433333233333333222221111                           01111            458


Q ss_pred             eeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhh
Q 025758          131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       131 ~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~  181 (248)
                      |+++++||| .+|||.++..++.++.+..+++ -+|+|||. .+.-+++++|+
T Consensus       717 p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~  768 (885)
T KOG0059|consen  717 PSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRT  768 (885)
T ss_pred             CCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhh
Confidence            999999999 8999999999999999998887 45555554 44444555553

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=99.17  E-value=2.8e-09  Score=93.87  Aligned_cols=198  Identities=14%  Similarity=0.140  Sum_probs=119.7

Q ss_pred             CcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (248)
Q Consensus        11 ~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (248)
                      .+.+++|.....+.+...+..  ....++++.|++|+||+++|+.+-.........-+.+++                  
T Consensus       137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c------------------  198 (445)
T TIGR02915       137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINC------------------  198 (445)
T ss_pred             cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEEC------------------
Confidence            456688877766666665542  223448899999999999999998732212212222221                  


Q ss_pred             ecccceeeeCCCCcCcchhHHHHHH-HHHHH----h--cCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 025758           89 LSSANHVELSPSDAGFQDRYVVQEV-IKEMA----K--NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~--~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---  158 (248)
                                 ...  .+ ..+... +....    .  ....+.....+...++|||++.|++..+..|++.+++..   
T Consensus       199 -----------~~~--~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~  264 (445)
T TIGR02915       199 -----------AAI--PE-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIER  264 (445)
T ss_pred             -----------CCC--Ch-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEe
Confidence                       111  00 001100 00000    0  000011113456689999999999999999999998642   


Q ss_pred             --------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCCH--HHHHHHHHHHHH----HcC---CCCCHH
Q 025758          159 --------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----KEG---LQLPSG  212 (248)
Q Consensus       159 --------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~~--~~~~~il~~~~~----~~~---~~~~~~  212 (248)
                              .++++|++|+...       .+.+.|-.|+  ..|.+||+..  +++..++...+.    +.+   ..++++
T Consensus       265 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~  344 (445)
T TIGR02915       265 LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD  344 (445)
T ss_pred             CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence                    1357888877652       3455666776  4566666653  333333333332    222   458899


Q ss_pred             HHHHHHHHc-cccHHHHHHHHHHHhhhcc
Q 025758          213 FATRLAEKS-NRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       213 ~~~~l~~~~-~g~~r~~~~~l~~~~~~~~  240 (248)
                      ++..+.... .||+|++.+.++.++..+.
T Consensus       345 a~~~L~~~~wpgNvreL~~~i~~a~~~~~  373 (445)
T TIGR02915       345 ALRALEAHAWPGNVRELENKVKRAVIMAE  373 (445)
T ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence            999998775 8999999999999986543

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.17  E-value=3.5e-11  Score=92.51  Aligned_cols=163  Identities=15%  Similarity=0.204  Sum_probs=94.2

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-----c---c--ccc
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-----N---I--DLE   85 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-----~---~--~~~   85 (248)
                      +..+.+++.++.-+.+|....  +.||||+||||+.+.+++++ .+++|++.+++.+...-.+..     .   .  ...
T Consensus        11 ~~Gr~ll~~vsl~~~pGev~a--ilGPNGAGKSTlLk~LsGel-~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~la   87 (259)
T COG4559          11 LAGRRLLDGVSLDLRPGEVLA--ILGPNGAGKSTLLKALSGEL-SPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLA   87 (259)
T ss_pred             eecceeccCcceeccCCcEEE--EECCCCccHHHHHHHhhCcc-CCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccc
Confidence            445666666666666776666  99999999999999999965 888899999887543111111     0   0  000


Q ss_pred             eeeecccce--eeeCCCCcCcchhH---HHHHHHHH-----HHhcCCCcCCC------------------CCCeeEEEEe
Q 025758           86 LTTLSSANH--VELSPSDAGFQDRY---VVQEVIKE-----MAKNRPIDTKG------------------KRGFKVLVLN  137 (248)
Q Consensus        86 ~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~------------------~~~~~viiiD  137 (248)
                      +. .++.+-  ++..+...+..+.+   ...+.+..     ++...-..+|+                  ...++++++|
T Consensus        88 Fp-Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LD  166 (259)
T COG4559          88 FP-FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD  166 (259)
T ss_pred             cc-eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEec
Confidence            00 001111  12223222222111   12222211     11111112221                  3355899999


Q ss_pred             CC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758          138 EV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       138 E~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      |+ ..||...|...+.+.+++... .-++++-++ -.+...+.+|...
T Consensus       167 EPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHD-LNLAA~YaDrivl  213 (259)
T COG4559         167 EPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD-LNLAAQYADRIVL  213 (259)
T ss_pred             CCccccchHHHHHHHHHHHHHHhcCCcEEEEEcc-chHHHHhhheeee
Confidence            99 799999999999999988554 455666555 4556677777743

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.17  E-value=1.9e-10  Score=94.09  Aligned_cols=57  Identities=11%  Similarity=0.120  Sum_probs=44.2

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ..+|+++++||| ..||+.....+.+.+.+......+|++|++.+. ...+.+|..++.
T Consensus       166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~-i~~~~d~i~~l~  223 (259)
T PRK14260        166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQ-ATRVSDFTAFFS  223 (259)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCeEEEEe
Confidence            458999999999 799999999999999887655667777776554 446667765554

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.17  E-value=1.3e-10  Score=105.78  Aligned_cols=146  Identities=15%  Similarity=0.242  Sum_probs=87.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   92 (248)
                      +.+.+.-.+++|.  .+.+.||+|+||||+++++++ +..+..|.+.++|.+........        .....+-..+..
T Consensus       358 il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~  434 (582)
T PRK11176        358 ALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTR-FYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA  434 (582)
T ss_pred             cccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHh-ccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence            3444444444442  377999999999999999999 78999999999997654211100        000000111122


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH-----HHhcCCC-----------cCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+...+  ..+.+.+.+.++.     +....|.           .+|+            ..+++++++||+ ..+|
T Consensus       435 ~Ni~~~~~~--~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD  512 (582)
T PRK11176        435 NNIAYARTE--QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD  512 (582)
T ss_pred             HHHhcCCCC--CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence            223332111  0111222222221     1111111           2332            348899999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSS  171 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~  171 (248)
                      +.....+.+.+.+...+.++|++||+++
T Consensus       513 ~~t~~~i~~~l~~~~~~~tvI~VtHr~~  540 (582)
T PRK11176        513 TESERAIQAALDELQKNRTSLVIAHRLS  540 (582)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence            9999999999988766788999998874

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.17  E-value=1.5e-10  Score=105.01  Aligned_cols=156  Identities=13%  Similarity=0.247  Sum_probs=93.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   92 (248)
                      +++.+...+++|.  .+.+.||+|+||||+++++++ +..+.+|.+.++|.+........        .....+-..+..
T Consensus       355 il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g-~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~  431 (574)
T PRK11160        355 VLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTR-AWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR  431 (574)
T ss_pred             ceecceEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence            4555555555543  467999999999999999998 77899999999997654211100        000000001112


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH-----HHhc----------CCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKN----------RPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----------~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (248)
                      +++.+...+   ...+.+.+.++.     +...          ....+|+            ..+++++++||+ ..+|+
T Consensus       432 ~Ni~~~~~~---~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~  508 (574)
T PRK11160        432 DNLLLAAPN---ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDA  508 (574)
T ss_pred             HHhhcCCCc---cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            222222111   111122222222     2222          1112332            448999999999 89999


Q ss_pred             HHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          145 EAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       145 ~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .....+.+.+.+...+.++|++||++..+.  ..+|+.++
T Consensus       509 ~t~~~i~~~l~~~~~~~tviiitHr~~~~~--~~d~i~~l  546 (574)
T PRK11160        509 ETERQILELLAEHAQNKTVLMITHRLTGLE--QFDRICVM  546 (574)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEecChhHHH--hCCEEEEE
Confidence            999999999998776678889999876543  24555433

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.16  E-value=1.3e-10  Score=94.61  Aligned_cols=160  Identities=15%  Similarity=0.167  Sum_probs=86.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc--C--CCcccceecccceeeccC---Ccccccceee-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--G--PGAEKVKVENKTWKIDAG---SRNIDLELTT-----   88 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~--~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----   88 (248)
                      +.+.+...+.+|.  .+.+.||||+||||+++++++.+.  .  +.+|.+.++|........   ..........     
T Consensus        18 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~   95 (250)
T PRK14266         18 ILKNVNLDIPKNS--VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP   95 (250)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence            3344444444443  367999999999999999998432  2  267888888865431000   0000000000     


Q ss_pred             --ecccceeeeCCCCcCcchhH----HHHHHHHHH---------HhcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           89 --LSSANHVELSPSDAGFQDRY----VVQEVIKEM---------AKNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        89 --~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------~~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                        .+..+++.+.....+.....    .+.+.++.+         .......+|+            ..+|+++++||| .
T Consensus        96 ~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~  175 (250)
T PRK14266         96 FPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCS  175 (250)
T ss_pred             CcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence              01111111110000000001    111112111         1222233442            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+|+.....+.+++.+...+..+|++|++...+ ..+.+|+..
T Consensus       176 gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-~~~~~~i~~  217 (250)
T PRK14266        176 ALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQA-TRVSKYTSF  217 (250)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHH-HhhcCEEEE
Confidence            999999999999999876556677777776554 355666543

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.16  E-value=1.2e-10  Score=91.91  Aligned_cols=150  Identities=13%  Similarity=0.171  Sum_probs=85.9

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +.+.+...+.+|.  .+.+.||||+||||+++++++ +..+..|.+.++|. +.+......    +...+..+++.+...
T Consensus        20 il~~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G-~~~~~~G~i~~~g~-i~~~~q~~~----l~~~t~~enl~~~~~   91 (204)
T cd03250          20 TLKDINLEVPKGE--LVAIVGPVGSGKSSLLSALLG-ELEKLSGSVSVPGS-IAYVSQEPW----IQNGTIRENILFGKP   91 (204)
T ss_pred             eeeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhC-cCCCCCCeEEEcCE-EEEEecCch----hccCcHHHHhccCCC
Confidence            4555666666554  366999999999999999998 67888999988872 221111100    011122223332211


Q ss_pred             CcCcchhHHHHHHH------HHHHh----------cCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758          101 DAGFQDRYVVQEVI------KEMAK----------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus       101 ~~~~~~~~~~~~~~------~~~~~----------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      .   .. ....+..      +.+..          .....++.            ..+|+++++||+ ..||+.....+.
T Consensus        92 ~---~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~  167 (204)
T cd03250          92 F---DE-ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF  167 (204)
T ss_pred             c---CH-HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence            1   00 0111111      11111          11123332            458999999999 899999988888


Q ss_pred             H-HHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          152 R-TMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       152 ~-~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      + ++..... ...+|++|++...+. . .+|+..+
T Consensus       168 ~~ll~~~~~~~~tvi~~sh~~~~~~-~-~d~i~~l  200 (204)
T cd03250         168 ENCILGLLLNNKTRILVTHQLQLLP-H-ADQIVVL  200 (204)
T ss_pred             HHHHHHhccCCCEEEEEeCCHHHHh-h-CCEEEEE
Confidence            7 5665533 467788888865544 3 5555433

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.16  E-value=2.1e-10  Score=93.50  Aligned_cols=161  Identities=16%  Similarity=0.155  Sum_probs=88.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCccc--ccceeeec-------
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRNI--DLELTTLS-------   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------   90 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++.. ..+..|.+.+++.+.....+....  .+.+....       
T Consensus        22 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~   99 (252)
T CHL00131         22 ILKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV   99 (252)
T ss_pred             eeecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence            4445555555443  36699999999999999999832 357789998888654321111110  00000000       


Q ss_pred             -ccceeeeCCC--C--cCc--chh----HHHHHHHHHH------HhcCCC-cCCC------------CCCeeEEEEeCC-
Q 025758           91 -SANHVELSPS--D--AGF--QDR----YVVQEVIKEM------AKNRPI-DTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        91 -~~~~~~~~~~--~--~~~--~~~----~~~~~~~~~~------~~~~~~-~~~~------------~~~~~viiiDE~-  139 (248)
                       ...++.+...  .  ...  ...    ..+.+.+..+      ....+. .+|+            ..+|+++++||| 
T Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  179 (252)
T CHL00131        100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD  179 (252)
T ss_pred             cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence             0001100000  0  000  000    1112222221      112222 2553            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          140 DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ..||......+.+++.+... +..+|++||+...+..-..+|+..
T Consensus       180 ~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~  224 (252)
T CHL00131        180 SGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHV  224 (252)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEE
Confidence            89999999999999987754 456788888766543222566643

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.15  E-value=3.5e-11  Score=107.66  Aligned_cols=158  Identities=15%  Similarity=0.194  Sum_probs=89.5

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----cccccceee---------
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT---------   88 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------   88 (248)
                      ++.+...+..|.  .+.|.||||+|||||++++++ +..+.+|.+.+++.++....+.    ....+-.+.         
T Consensus       279 l~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~i~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  355 (510)
T PRK09700        279 VRDISFSVCRGE--ILGFAGLVGSGRTELMNCLFG-VDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN  355 (510)
T ss_pred             ccceeEEEcCCc--EEEEECCCCCCHHHHHHHHhC-CCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence            344444444443  366999999999999999998 6688899999988654210000    000011110         


Q ss_pred             ecccceeeeCCCC----c----Cc-ch---hHHHHHHHHHHHh------cCCCcCCC------------CCCeeEEEEeC
Q 025758           89 LSSANHVELSPSD----A----GF-QD---RYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNE  138 (248)
Q Consensus        89 ~~~~~~~~~~~~~----~----~~-~~---~~~~~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE  138 (248)
                      .++.+++.+....    .    +. ..   ...+.++++.+.-      ..+..+|+            ..+|+++|+||
T Consensus       356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE  435 (510)
T PRK09700        356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE  435 (510)
T ss_pred             CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence            1111112111100    0    00 00   1122333433221      12224442            45899999999


Q ss_pred             C-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          139 V-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       139 ~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      | ..||+.....+.++|.+... +..+|++||+.. ....+.+|+..
T Consensus       436 Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~  481 (510)
T PRK09700        436 PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAV  481 (510)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEE
Confidence            9 89999999999999987644 356777777654 44467777643

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.15  E-value=1.2e-10  Score=105.82  Aligned_cols=156  Identities=21%  Similarity=0.250  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--------cccccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--------RNIDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~   92 (248)
                      +.+.+...+++|.  .+.+.||+|+||||+++++++ +..+..|.+.++|.+.......        ......+-..+..
T Consensus       350 ~l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~  426 (585)
T TIGR01192       350 GVFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQR-VYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR  426 (585)
T ss_pred             cccceeEEEcCCC--EEEEECCCCCCHHHHHHHHcc-CCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHH
Confidence            4455555555543  467999999999999999998 6788999999988654311110        0000000001111


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHH-----HHH-h----------cCCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIK-----EMA-K----------NRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~----------~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+..++.   ......+.++     ... .          .....+|+            ..+|+++++||+ ..+|
T Consensus       427 ~Ni~~~~~~~---~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD  503 (585)
T TIGR01192       427 ENIRLGREGA---TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD  503 (585)
T ss_pred             HHHhcCCCCC---CHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence            2222221111   1111111111     111 1          11123332            448999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ......+.+.+++...+.++|++||+.+.+.  ..+|...+
T Consensus       504 ~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~--~~d~i~~l  542 (585)
T TIGR01192       504 VETEARVKNAIDALRKNRTTFIIAHRLSTVR--NADLVLFL  542 (585)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEEcChHHHH--cCCEEEEE
Confidence            9999999999988766678899999975542  24555444

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.15  E-value=2.3e-10  Score=106.06  Aligned_cols=155  Identities=17%  Similarity=0.269  Sum_probs=92.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc--------cccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN--------IDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~   92 (248)
                      +++.+...+++|.  .+.+.||+|+||||+++++++ +..+..|.+.++|.++........        ....+-..+..
T Consensus       480 vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~g-l~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~  556 (694)
T TIGR03375       480 ALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLG-LYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR  556 (694)
T ss_pred             ceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence            4555555555543  477999999999999999998 789999999999976542111100        00000001111


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+..++   .+.+.+.+.++.     +....|           ..+|+            ..+|+++++||+ ..+|
T Consensus       557 eNi~~~~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD  633 (694)
T TIGR03375       557 DNIALGAPY---ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD  633 (694)
T ss_pred             HHHhCCCCC---CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence            222222111   111112222211     111111           12331            348899999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +.....+.+.+.+..++.++|++||+++.+  ...+|+.+
T Consensus       634 ~~te~~i~~~l~~~~~~~T~iiItHrl~~~--~~~D~iiv  671 (694)
T TIGR03375       634 NRSEERFKDRLKRWLAGKTLVLVTHRTSLL--DLVDRIIV  671 (694)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCHHHH--HhCCEEEE
Confidence            999999999999887778899999997533  23455543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.15  E-value=1e-10  Score=104.50  Aligned_cols=158  Identities=15%  Similarity=0.236  Sum_probs=90.3

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC----cccccceee------ec
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT------LS   90 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~   90 (248)
                      +.+.+...+.+|.  .+.|.||||+|||||++++++ +..+.+|.+.+++.++....+.    ....+-.+.      .+
T Consensus        19 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t   95 (501)
T PRK11288         19 ALDDISFDCRAGQ--VHALMGENGAGKSTLLKILSG-NYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT   95 (501)
T ss_pred             EEeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence            4445555555543  366999999999999999998 6688899998888654311100    000000000      01


Q ss_pred             ccceeeeCC--CCcC-cch---hHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           91 SANHVELSP--SDAG-FQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        91 ~~~~~~~~~--~~~~-~~~---~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      +.+++.+..  ...+ ...   ...+.+.++.+.     ...+..+|+            ..+|+++|+||| ..||+..
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~  175 (501)
T PRK11288         96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE  175 (501)
T ss_pred             HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence            111121111  0001 001   112233333321     111223442            448999999999 8999999


Q ss_pred             HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhh
Q 025758          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       147 ~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      ...+.+.+.+... +..+|++||+...+ ..+.+|+.
T Consensus       176 ~~~l~~~l~~~~~~g~tiiiitHd~~~~-~~~~d~i~  211 (501)
T PRK11288        176 IEQLFRVIRELRAEGRVILYVSHRMEEI-FALCDAIT  211 (501)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEEE
Confidence            9999999987743 35677777776544 46667763

>PRK13409 putative ATPase RIL; Provisional

Probab=99.15  E-value=1.9e-10  Score=104.11  Aligned_cols=139  Identities=19%  Similarity=0.253  Sum_probs=80.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (248)
                      +.|.||||+||||+++++++ +..+..|.+.++ ..+.+.......   ....++.+.+.+......  ......+.++.
T Consensus       368 v~l~G~NGsGKSTLlk~L~G-l~~p~~G~I~~~-~~i~y~~Q~~~~---~~~~tv~e~l~~~~~~~~--~~~~~~~~L~~  440 (590)
T PRK13409        368 IGIVGPNGIGKTTFAKLLAG-VLKPDEGEVDPE-LKISYKPQYIKP---DYDGTVEDLLRSITDDLG--SSYYKSEIIKP  440 (590)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCceEEEEe-eeEEEecccccC---CCCCcHHHHHHHHhhhcC--hHHHHHHHHHH
Confidence            77999999999999999998 667788877654 111111110000   000111111111000000  01112222222


Q ss_pred             -----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHH
Q 025758          117 -----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEA  176 (248)
Q Consensus       117 -----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~  176 (248)
                           .....+..+|+            ..+++++++||| .+||...+..+.++|.+...  +..+|++||+.. ....
T Consensus       441 l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~  519 (590)
T PRK13409        441 LQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDY  519 (590)
T ss_pred             CCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHH
Confidence                 22334445553            458999999999 89999999999999998744  356777777754 4446


Q ss_pred             Hhhhhhe
Q 025758          177 IRSRCLN  183 (248)
Q Consensus       177 l~sR~~~  183 (248)
                      +.+|+.+
T Consensus       520 ~aDrviv  526 (590)
T PRK13409        520 ISDRLMV  526 (590)
T ss_pred             hCCEEEE
Confidence            6777643

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.15  E-value=2.4e-10  Score=105.96  Aligned_cols=156  Identities=21%  Similarity=0.273  Sum_probs=92.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   92 (248)
                      +.+.+...+++|.  .+.+.|++|+||||+++++++ +..+..|.+.++|.++.......        .....+-..+..
T Consensus       472 il~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g-~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~  548 (694)
T TIGR01846       472 VLSNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQR-LYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR  548 (694)
T ss_pred             ccccceEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence            4555555555443  477999999999999999998 77899999999997654111100        000000011112


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+....   .+.+.+.+.++.     +....|           ..+|+            ..+|+++++||+ ..+|
T Consensus       549 eNi~~~~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD  625 (694)
T TIGR01846       549 DNIALCNPG---APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD  625 (694)
T ss_pred             HHHhcCCCC---CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence            222221111   111112222211     111111           12331            348999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.....+.+.+.+...+.++|++||+++.+.  ..+|+.++
T Consensus       626 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~--~~d~ii~l  664 (694)
T TIGR01846       626 YESEALIMRNMREICRGRTVIIIAHRLSTVR--ACDRIIVL  664 (694)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCChHHHH--hCCEEEEE
Confidence            9999999999998766778999999876542  25665443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.15  E-value=2.9e-10  Score=93.35  Aligned_cols=56  Identities=9%  Similarity=0.196  Sum_probs=43.5

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+++++++||| ..||......+.+++.+......+|++|++.+.+ ..+.+|+.++
T Consensus       177 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~-~~~~d~i~~l  233 (265)
T PRK14252        177 ATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQA-ARVSDYTAYM  233 (265)
T ss_pred             HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHH-HHhCCEEEEE
Confidence            458999999999 8999999999999999876556677777775544 4566777544

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.14  E-value=6.8e-11  Score=106.74  Aligned_cols=54  Identities=15%  Similarity=0.271  Sum_probs=41.4

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|+++++||| ..||+.....+.++|.+..  ..+|++||+.. ....+.+|+..+
T Consensus       177 ~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~-~~~~~~d~v~~l  231 (552)
T TIGR03719       177 LSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRY-FLDNVAGWILEL  231 (552)
T ss_pred             hcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHH-HHHhhcCeEEEE
Confidence            458999999999 7999999999999998763  46777777654 444666776443

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.14  E-value=3.1e-10  Score=103.38  Aligned_cols=145  Identities=16%  Similarity=0.220  Sum_probs=86.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   92 (248)
                      +++.+...+++|.  .+.+.||+|+||||+++++++ +. +..|.+.++|.++..-....        .+...+-..+..
T Consensus       365 vL~~i~l~i~~G~--~vaIvG~SGsGKSTL~~lL~g-~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~  440 (588)
T PRK11174        365 LAGPLNFTLPAGQ--RIALVGPSGAGKTSLLNALLG-FL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR  440 (588)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence            3344444444443  367999999999999999999 55 78899999997654211110        000000111122


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+..++   .+.+.+.+.++.     +....           ...+|+            ..+++|+++||+ ..+|
T Consensus       441 eNI~~g~~~---~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD  517 (588)
T PRK11174        441 DNVLLGNPD---ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD  517 (588)
T ss_pred             HHhhcCCCC---CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence            233332111   111122222221     11111           112332            347899999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSK  172 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~  172 (248)
                      ......+.+.+.+..++.++|++||+++.
T Consensus       518 ~~te~~i~~~l~~~~~~~TvIiItHrl~~  546 (588)
T PRK11174        518 AHSEQLVMQALNAASRRQTTLMVTHQLED  546 (588)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecChHH
Confidence            99999999999988777789999999743

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.14  E-value=2e-10  Score=100.96  Aligned_cols=156  Identities=17%  Similarity=0.181  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +++.+...+..|.  .+.|.||||+|||||++++++ +..+..|.+.++|........  ..  .....+..+.+.+...
T Consensus        39 IL~nVSfsI~~GE--ivgIiGpNGSGKSTLLkiLaG-Ll~P~sGeI~I~G~~~~i~~~--~~--l~~~lTV~EnL~l~~~  111 (549)
T PRK13545         39 ALNNISFEVPEGE--IVGIIGLNGSGKSTLSNLIAG-VTMPNKGTVDIKGSAALIAIS--SG--LNGQLTGIENIELKGL  111 (549)
T ss_pred             EEeeeEEEEeCCC--EEEEEcCCCCCHHHHHHHHhC-CCCCCceEEEECCEeeeEEec--cc--cCCCCcHHHHHHhhhh
Confidence            3444444454443  366999999999999999998 668889999888753110000  00  0000111111111100


Q ss_pred             CcCcchhH---HHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          101 DAGFQDRY---VVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       101 ~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      ..+.....   .+.++++.     ........+|+            ..+|+++++||| ..||+.....+++.|.+...
T Consensus       112 ~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~  191 (549)
T PRK13545        112 MMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE  191 (549)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence            00111100   11122221     11222333442            447999999999 79999999999999988743


Q ss_pred             -CeeEEEEecCCCcccHHHhhhhhee
Q 025758          160 -SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       160 -~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                       +..+|++||+.. ....+.+|+..+
T Consensus       192 ~G~TIIIVSHdl~-~i~~l~DrIivL  216 (549)
T PRK13545        192 QGKTIFFISHSLS-QVKSFCTKALWL  216 (549)
T ss_pred             CCCEEEEEECCHH-HHHHhCCEEEEE
Confidence             346777777654 445667776443

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.14  E-value=1.3e-10  Score=105.28  Aligned_cols=146  Identities=17%  Similarity=0.263  Sum_probs=86.0

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--------cccccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--------RNIDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~   92 (248)
                      +.+.+...+++|.  .+.+.||+|+||||+++++++ +..+.+|.+.++|.++......        ......+-..+..
T Consensus       330 ~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~  406 (569)
T PRK10789        330 ALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQR-HFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA  406 (569)
T ss_pred             cccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhc-ccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence            4444444554443  477999999999999999998 7789999999988754311100        0000000001112


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH------HHhc----------CCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE------MAKN----------RPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+...+   .......+.++.      +...          ....+|+            ..+++++++||+ ..+|
T Consensus       407 ~Ni~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD  483 (569)
T PRK10789        407 NNIALGRPD---ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD  483 (569)
T ss_pred             HHHhcCCCC---CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence            222222111   111112222211      1111          1112332            448999999999 7999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSK  172 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~  172 (248)
                      +.....+.+.+.+...+.++|++||+.+.
T Consensus       484 ~~~~~~i~~~l~~~~~~~tii~itH~~~~  512 (569)
T PRK10789        484 GRTEHQILHNLRQWGEGRTVIISAHRLSA  512 (569)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecchhH
Confidence            99999999999887666778888888754

>PRK08181 transposase; Validated

Probab=99.14  E-value=2.3e-10  Score=93.44  Aligned_cols=132  Identities=17%  Similarity=0.275  Sum_probs=74.4

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCc
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (248)
                      .....|+..+  .+++|+||+|+|||++|.+++..+...+. .+                    ...+..+.+...... 
T Consensus        97 ~~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~-~v--------------------~f~~~~~L~~~l~~a-  152 (269)
T PRK08181         97 AAGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGW-RV--------------------LFTRTTDLVQKLQVA-  152 (269)
T ss_pred             HHHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCC-ce--------------------eeeeHHHHHHHHHHH-
Confidence            3444576543  46999999999999999999987632211 00                    000000000000000 


Q ss_pred             CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC--CHHHHHHHHHHHHHhcCCeeEEEEecCCCc--------
Q 025758          103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSSSK--------  172 (248)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l--~~~~~~~ll~~le~~~~~~~~Il~t~~~~~--------  172 (248)
                        .......+.++.+           ..++++||||++..  +......|+.+++.......+|++||.+..        
T Consensus       153 --~~~~~~~~~l~~l-----------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D  219 (269)
T PRK08181        153 --RRELQLESAIAKL-----------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPD  219 (269)
T ss_pred             --HhCCcHHHHHHHH-----------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCC
Confidence              0000011122222           25679999999765  456677899999875445678888887741        


Q ss_pred             --ccHHHhhhh----heeeecCCCH
Q 025758          173 --VTEAIRSRC----LNIRINSPTE  191 (248)
Q Consensus       173 --~~~~l~sR~----~~i~~~~~~~  191 (248)
                        +..++.||.    ..+.|...+-
T Consensus       220 ~~~a~aildRL~h~~~~i~~~g~s~  244 (269)
T PRK08181        220 PAMTLAAVDRLVHHATIFEMNVESY  244 (269)
T ss_pred             ccchhhHHHhhhcCceEEecCCccc
Confidence              234555665    4677776543

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.13  E-value=2.5e-10  Score=93.35  Aligned_cols=160  Identities=16%  Similarity=0.179  Sum_probs=88.4

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc-----eeeccCCcc---cccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-----WKIDAGSRN---IDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~   92 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++ +..+..|.+.+++.+     +........   .......+...
T Consensus        21 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~   97 (258)
T PRK11701         21 GCRDVSFDLYPGE--VLGIVGESGSGKTTLLNALSA-RLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH   97 (258)
T ss_pred             eeeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence            4444555555443  367999999999999999998 668889999888865     321000000   00001111000


Q ss_pred             ceeeeCCC-----C-------cCc-c---hhHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeC
Q 025758           93 NHVELSPS-----D-------AGF-Q---DRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNE  138 (248)
Q Consensus        93 ~~~~~~~~-----~-------~~~-~---~~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE  138 (248)
                      ....+.+.     .       ... .   ....+.+.++.+.      ...+..+|+            ..+|+++++||
T Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE  177 (258)
T PRK11701         98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE  177 (258)
T ss_pred             cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            00000000     0       000 0   0111222233221      122223442            45899999999


Q ss_pred             C-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          139 V-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       139 ~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      | ..||+.....+.+.+.+...  +..+|++|++...+ ..+.+|+..+
T Consensus       178 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~-~~~~d~i~~l  225 (258)
T PRK11701        178 PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA-RLLAHRLLVM  225 (258)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH-HHhcCEEEEE
Confidence            9 89999999999999987643  45677777765444 3556776443

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.13  E-value=2.8e-10  Score=93.97  Aligned_cols=148  Identities=19%  Similarity=0.261  Sum_probs=81.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +++.+...+..|.  .+.|.||||+||||++++|++ +..+..|.+.+++. +.+....... +.   .+..+++.+...
T Consensus        52 vL~~vs~~i~~Ge--~~~liG~NGsGKSTLl~~I~G-l~~p~~G~I~i~g~-i~yv~q~~~l-~~---~tv~enl~~~~~  123 (282)
T cd03291          52 VLKNINLKIEKGE--MLAITGSTGSGKTSLLMLILG-ELEPSEGKIKHSGR-ISFSSQFSWI-MP---GTIKENIIFGVS  123 (282)
T ss_pred             ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCE-EEEEeCcccc-cc---cCHHHHhhcccc
Confidence            3334444444443  366999999999999999998 66888898888763 1111111000 00   011111111110


Q ss_pred             CcCcchhHHHHHHHH-----HHHhc-----------CCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758          101 DAGFQDRYVVQEVIK-----EMAKN-----------RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus       101 ~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      ..    .....+.++     .....           ....+|+            ..+|+++|+||| ..||+.....++
T Consensus       124 ~~----~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~  199 (282)
T cd03291         124 YD----EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF  199 (282)
T ss_pred             cC----HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence            00    000011111     00000           0112331            447899999999 799999988888


Q ss_pred             HH-HHHhcCCeeEEEEecCCCcccHHHhhhhh
Q 025758          152 RT-MEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       152 ~~-le~~~~~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      +. ++....+..+|++|++...+ . ..+|+.
T Consensus       200 ~~ll~~~~~~~tIiiisH~~~~~-~-~~d~i~  229 (282)
T cd03291         200 ESCVCKLMANKTRILVTSKMEHL-K-KADKIL  229 (282)
T ss_pred             HHHHHHhhCCCEEEEEeCChHHH-H-hCCEEE
Confidence            74 45554456788888887764 2 566763

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.13  E-value=1.1e-10  Score=94.78  Aligned_cols=159  Identities=16%  Similarity=0.156  Sum_probs=85.1

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCcc--cccceeeeccc-----
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRN--IDLELTTLSSA-----   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----   92 (248)
                      +.+.+...+.+|.  .+.|.||||+||||+++++++.+ ..+..|.+.++|.+.....+...  ..+....-...     
T Consensus        16 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   93 (248)
T PRK09580         16 ILRGLNLEVRPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV   93 (248)
T ss_pred             eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence            4444544454443  36799999999999999999943 35788999888865431111000  00000000000     


Q ss_pred             ---ceeeeCCCC---c-C--cchh----HHHHHHHHHH------HhcCC-CcCCC------------CCCeeEEEEeCC-
Q 025758           93 ---NHVELSPSD---A-G--FQDR----YVVQEVIKEM------AKNRP-IDTKG------------KRGFKVLVLNEV-  139 (248)
Q Consensus        93 ---~~~~~~~~~---~-~--~~~~----~~~~~~~~~~------~~~~~-~~~~~------------~~~~~viiiDE~-  139 (248)
                         .+.......   . .  ....    ..+.+.++.+      ..... ..+|+            ..+|+++++||| 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt  173 (248)
T PRK09580         94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD  173 (248)
T ss_pred             hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence               000000000   0 0  0000    0111111110      01111 13442            458999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHH-hhhhh
Q 025758          140 DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL  182 (248)
Q Consensus       140 d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l-~sR~~  182 (248)
                      ..||+.....+.+.+.+... +..+|++||+...+ ..+ .+|+.
T Consensus       174 ~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~-~~~~~d~i~  217 (248)
T PRK09580        174 SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL-DYIKPDYVH  217 (248)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhhhCCEEE
Confidence            89999999999999987754 35677887876543 333 45553

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.13  E-value=4e-11  Score=107.09  Aligned_cols=160  Identities=16%  Similarity=0.179  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC--CcccceecccceeeccCC----cccccceee-----
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS----RNIDLELTT-----   88 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----   88 (248)
                      .+.+.+...+.+|.  .+.|.||||+||||+++++++ +..+  ..|.+.++|.++......    ....+-.+.     
T Consensus        15 ~il~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G-~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~   91 (500)
T TIGR02633        15 KALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP   91 (500)
T ss_pred             EeecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhC-CCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence            34555555555553  366999999999999999998 5454  689898888654311100    000000000     


Q ss_pred             -ecccceeeeCCCCc--C--cch---hHHHHHHHHHHHh------cCCCcCCC------------CCCeeEEEEeCC-CC
Q 025758           89 -LSSANHVELSPSDA--G--FQD---RYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DK  141 (248)
Q Consensus        89 -~~~~~~~~~~~~~~--~--~~~---~~~~~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~  141 (248)
                       .++.+++.+.....  +  ...   ...+.+.++.+.-      .....+|+            ..+|+++++||| ..
T Consensus        92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~  171 (500)
T TIGR02633        92 ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSS  171 (500)
T ss_pred             CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence             01111111111000  0  000   1112233333211      11223442            448999999999 89


Q ss_pred             CCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758          142 LSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       142 l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +|+.....+.++|.+.... ..+|++||+.. ....+.+|+.+
T Consensus       172 LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~  213 (500)
T TIGR02633       172 LTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICV  213 (500)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEE
Confidence            9999999999999887443 45677776654 44466677643

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.13  E-value=6.7e-11  Score=106.83  Aligned_cols=156  Identities=15%  Similarity=0.184  Sum_probs=86.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc-ceeeccCCcccccceeeecccceeeeCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK-TWKIDAGSRNIDLELTTLSSANHVELSP   99 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (248)
                      +++.+...+.+|.  .+.|.||||+|||||++++++ +..+.+|.+.+++. .+.+.......  -....++.+++.+..
T Consensus       339 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G-~~~p~~G~i~~~~~~~i~~v~q~~~~--~~~~~tv~e~l~~~~  413 (556)
T PRK11819        339 LIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITG-QEQPDSGTIKIGETVKLAYVDQSRDA--LDPNKTVWEEISGGL  413 (556)
T ss_pred             eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCceEEEEEeCchhh--cCCCCCHHHHHHhhc
Confidence            4445554555443  366999999999999999998 66788888877432 11111111000  000011111111111


Q ss_pred             CCcCcc-hhHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          100 SDAGFQ-DRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       100 ~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      ...+.. ........++.+.      ...+..+|+            ..+|+++|+||| .+||+.....+.++|.+.. 
T Consensus       414 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-  492 (556)
T PRK11819        414 DIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP-  492 (556)
T ss_pred             ccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-
Confidence            000000 0111222232221      112234442            458999999999 7999999999999999874 


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhee
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                       ..+|++||+.. ....+.+|+..+
T Consensus       493 -~tvi~vtHd~~-~~~~~~d~i~~l  515 (556)
T PRK11819        493 -GCAVVISHDRW-FLDRIATHILAF  515 (556)
T ss_pred             -CeEEEEECCHH-HHHHhCCEEEEE
Confidence             35777777654 444666776444

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.12  E-value=2e-09  Score=78.86  Aligned_cols=27  Identities=52%  Similarity=0.776  Sum_probs=23.2

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      .+++|+||+||||||+++.++..+...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            458999999999999999999866443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.12  E-value=9.8e-11  Score=105.77  Aligned_cols=54  Identities=15%  Similarity=0.251  Sum_probs=41.6

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|+++|+||| ..||+.....+.+.+.+..  ..+|++||+.. ....+.+|+..+
T Consensus       179 ~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~-~~~~~~d~i~~l  233 (556)
T PRK11819        179 LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRY-FLDNVAGWILEL  233 (556)
T ss_pred             hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHH-HHHhhcCeEEEE
Confidence            448999999999 8999999999999998864  46777777654 444666777443

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=99.12  E-value=6.3e-09  Score=92.15  Aligned_cols=111  Identities=17%  Similarity=0.163  Sum_probs=83.2

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCC
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSP  189 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~  189 (248)
                      +...++|||++.|+...+..|++++++..           .++.+|++|+...       .+.+.+..|+  ..|++||+
T Consensus       228 ~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpL  307 (463)
T TIGR01818       228 DGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPL  307 (463)
T ss_pred             CCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCc
Confidence            45679999999999999999999998642           1346788776552       3556777877  47888887


Q ss_pred             C--HHHHHHHHHHHHHH----cC---CCCCHHHHHHHHHHc-cccHHHHHHHHHHHhhhcc
Q 025758          190 T--EEQIVKVLEFIAKK----EG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       190 ~--~~~~~~il~~~~~~----~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~  240 (248)
                      .  .+++..++...+.+    .+   ..++++++..|.... .||+|++.+.++.++..+.
T Consensus       308 r~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~  368 (463)
T TIGR01818       308 RERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMAS  368 (463)
T ss_pred             ccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence            7  56666666554432    22   358899999998775 8999999999999886544

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=99.12  E-value=5.9e-09  Score=88.16  Aligned_cols=188  Identities=15%  Similarity=0.160  Sum_probs=108.8

Q ss_pred             cccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee--e-----ccCCcccc-
Q 025758           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK--I-----DAGSRNID-   83 (248)
Q Consensus        12 ~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~--~-----~~~~~~~~-   83 (248)
                      |.-++|++..+..|-...-+..+.++|+.|+.|+||||++|+++. |+.+... +.  |++|.  -     .|..|... 
T Consensus        16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~-LLp~~~~-V~--gc~f~cdP~~P~~~c~~c~~k~   91 (423)
T COG1239          16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALAD-LLPEIEV-VI--GCPFNCDPDDPEEMCDECRAKG   91 (423)
T ss_pred             hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHH-hCCccce-ec--CCCCCCCCCChhhhhHHHHhhc
Confidence            456789999999888777777888899999999999999999998 5443321 11  32222  0     01101000 


Q ss_pred             cceeeeccc-ceeeeCCCCcC-----cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758           84 LELTTLSSA-NHVELSPSDAG-----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (248)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~  157 (248)
                      .+...+... ..+.+.....+     +.+..+....++.-.+....++-.+.+..|+.+||+.-|+...++.|+..+++.
T Consensus        92 ~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG  171 (423)
T COG1239          92 DELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEG  171 (423)
T ss_pred             cccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhC
Confidence            011111110 11111111111     111122233333211111223334667789999999999999999999999873


Q ss_pred             c-----------CCeeEEEE-ecCCC--cccHHHhhhh-heeeecCC-CHHHHHHHHHHHHH
Q 025758          158 S-----------ASCRLILC-CNSSS--KVTEAIRSRC-LNIRINSP-TEEQIVKVLEFIAK  203 (248)
Q Consensus       158 ~-----------~~~~~Il~-t~~~~--~~~~~l~sR~-~~i~~~~~-~~~~~~~il~~~~~  203 (248)
                      .           .-..|+++ |-+|+  ++-+.|++|+ ..+...++ +.++...++.+...
T Consensus       172 ~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~  233 (423)
T COG1239         172 VNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA  233 (423)
T ss_pred             CceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence            1           11225554 33443  6999999997 56666555 46666777766544

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=7.1e-11  Score=106.17  Aligned_cols=156  Identities=22%  Similarity=0.310  Sum_probs=88.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc-eeeccCCcccccceeeecccceeeeCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSP   99 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (248)
                      +.+.+...+..|.  .+.|.||||+|||||++++++ +..+..|.+.+++.. +.+......... ....++.+++....
T Consensus       334 ~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G-~~~p~~G~i~~~~~~~i~~~~q~~~~~~-~~~~t~~~~~~~~~  409 (530)
T PRK15064        334 LFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVG-ELEPDSGTVKWSENANIGYYAQDHAYDF-ENDLTLFDWMSQWR  409 (530)
T ss_pred             eecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCceEEEEEcccccccC-CCCCcHHHHHHHhc
Confidence            3444444444443  366999999999999999998 668888888776631 211111000000 00001111111100


Q ss_pred             CCcCcchhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC
Q 025758          100 SDAGFQDRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~  160 (248)
                      .  .......+.+.++.+      ....+..+|+            ..+|+++++||| ..||+.....+.+.+.+.  .
T Consensus       410 ~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~  485 (530)
T PRK15064        410 Q--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--E  485 (530)
T ss_pred             c--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--C
Confidence            0  001111233333332      1223334442            458999999999 899999999999999987  3


Q ss_pred             eeEEEEecCCCcccHHHhhhhheee
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ..+|++||+.. ....+.+|+..+.
T Consensus       486 ~tvi~vsHd~~-~~~~~~d~i~~l~  509 (530)
T PRK15064        486 GTLIFVSHDRE-FVSSLATRIIEIT  509 (530)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEE
Confidence            46777777754 4446667775543

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.12  E-value=5.9e-10  Score=85.52  Aligned_cols=52  Identities=12%  Similarity=0.161  Sum_probs=39.8

Q ss_pred             eeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       131 ~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ++++++||| ..+|+.....+.+.+.+... +..+|++||+...+  ...+|+..+
T Consensus       108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~--~~~d~i~~l  161 (176)
T cd03238         108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL--SSADWIIDF  161 (176)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HhCCEEEEE
Confidence            789999999 89999999999999987643 45678888887543  345555444

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.12  E-value=3.9e-10  Score=102.66  Aligned_cols=154  Identities=18%  Similarity=0.271  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   92 (248)
                      +++.+...+++|.  .+.+.|++|+||||+++++++ +..+..|.+.++|.+........        .....+-..+..
T Consensus       350 iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~  426 (588)
T PRK13657        350 GVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQR-VFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE  426 (588)
T ss_pred             eecceeEEECCCC--EEEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHH
Confidence            4444444444443  378999999999999999998 77889999999997554111100        000000001112


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+..++  . ..+.+.+.++.     .....           ...+|+            .++++|+++||| ..+|
T Consensus       427 ~Ni~~~~~~--~-~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD  503 (588)
T PRK13657        427 DNIRVGRPD--A-TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALD  503 (588)
T ss_pred             HHHhcCCCC--C-CHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence            222222111  1 11112222111     11111           112332            448999999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhh
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      +.....+++.+.+..++.++|++||++..+  ...+|+.
T Consensus       504 ~~t~~~i~~~l~~~~~~~tvIiitHr~~~~--~~~D~ii  540 (588)
T PRK13657        504 VETEAKVKAALDELMKGRTTFIIAHRLSTV--RNADRIL  540 (588)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEEecHHHH--HhCCEEE
Confidence            999999999998876677889999987432  2345543

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=99.12  E-value=5.5e-09  Score=92.36  Aligned_cols=112  Identities=17%  Similarity=0.188  Sum_probs=77.7

Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCeeEEEEecCCC-------cccHHHhhhh--heeeecC
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINS  188 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~  188 (248)
                      .+..+++|||++.|++..+..|+..+++..           .+.++|++|+...       .+.+.+..|+  ..|.+||
T Consensus       236 a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~pp  315 (457)
T PRK11361        236 ANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPP  315 (457)
T ss_pred             CCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCC
Confidence            345689999999999999999999997532           2357888887552       3555566666  3556666


Q ss_pred             CC--HHHHHHHHHHHHHH----cC---CCCCHHHHHHHHHHc-cccHHHHHHHHHHHhhhcc
Q 025758          189 PT--EEQIVKVLEFIAKK----EG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       189 ~~--~~~~~~il~~~~~~----~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~  240 (248)
                      +.  .+++..++...+.+    .+   ..+++++++.+.... .||+|++.+.++.++....
T Consensus       316 LreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~  377 (457)
T PRK11361        316 LRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS  377 (457)
T ss_pred             hhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC
Confidence            54  23344333333222    12   358899999998765 8999999999999886543

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.12  E-value=4.4e-10  Score=83.76  Aligned_cols=139  Identities=20%  Similarity=0.326  Sum_probs=83.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-----ccccc-----ceee---ecccceeeeCCCCcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDL-----ELTT---LSSANHVELSPSDAG  103 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~---~~~~~~~~~~~~~~~  103 (248)
                      +-++||+|+||||+.-.+|+ +..+++|.+++.|.+.......     +....     ++..   .....++.+..+-.+
T Consensus        39 vaiVG~SGSGKSTLl~vlAG-Ld~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g  117 (228)
T COG4181          39 VAIVGPSGSGKSTLLAVLAG-LDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG  117 (228)
T ss_pred             EEEEcCCCCcHHhHHHHHhc-CCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC
Confidence            66999999999999999998 8999999999998755311110     00000     1111   111223333222222


Q ss_pred             ---cchhHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh--cCC
Q 025758          104 ---FQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY--SAS  160 (248)
Q Consensus       104 ---~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~--~~~  160 (248)
                         ........+.+...     ...+|..+++            ...|+|+|-||| ..+|......+..++=..  ...
T Consensus       118 e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G  197 (228)
T COG4181         118 ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERG  197 (228)
T ss_pred             CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcC
Confidence               11222334444332     3456667774            457999999999 789887766666555332  345


Q ss_pred             eeEEEEecCCCcccHHHhhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ++.|+.|+++     .+..||
T Consensus       198 ~TlVlVTHD~-----~LA~Rc  213 (228)
T COG4181         198 TTLVLVTHDP-----QLAARC  213 (228)
T ss_pred             ceEEEEeCCH-----HHHHhh
Confidence            6788998874     455666

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.12  E-value=3.1e-10  Score=102.10  Aligned_cols=146  Identities=17%  Similarity=0.236  Sum_probs=87.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc--------cccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN--------IDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~   92 (248)
                      +++.+...+++|.  .+.++||+|+||||+++++++ +..+..|.+.++|.+.........        ....+-..+..
T Consensus       337 il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~  413 (529)
T TIGR02857       337 ALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLG-FVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA  413 (529)
T ss_pred             cccceeEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence            4455555555543  367999999999999999998 788999999999976542211100        00000001111


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHH-----HHhc-----------CCCcCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKE-----MAKN-----------RPIDTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.+..+..   ..+...+.++.     +...           ....+|+            ..+++++++||+ ..+|
T Consensus       414 ~Ni~~~~~~~---~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD  490 (529)
T TIGR02857       414 ENIRLARPDA---SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD  490 (529)
T ss_pred             HHHhccCCCC---CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence            2222211110   11112222211     1111           1123332            447899999999 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSK  172 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~  172 (248)
                      +.....+.+.+.+..++.++|++||+.+.
T Consensus       491 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~  519 (529)
T TIGR02857       491 AETEALVTEALRALAQGRTVLLVTHRLAL  519 (529)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence            99999999999987777789999998743

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1.7e-10  Score=103.01  Aligned_cols=149  Identities=19%  Similarity=0.288  Sum_probs=96.2

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-c-------cccceeeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-N-------IDLELTTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~   92 (248)
                      +.+.+...+++|+.  +.+.||+|+||||+|..+-+ +..|.+|.+.+||.++..-.+.. .       +..-+-..++.
T Consensus       483 Vlk~lsfti~pGe~--vALVGPSGsGKSTiasLL~r-fY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~  559 (716)
T KOG0058|consen  483 VLKNLSFTIRPGEV--VALVGPSGSGKSTIASLLLR-FYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR  559 (716)
T ss_pred             hhcCceeeeCCCCE--EEEECCCCCCHHHHHHHHHH-hcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence            66677777777754  45999999999999999998 89999999999998765211110 0       00001111234


Q ss_pred             ceeeeCCCCcCcchhHHHHHHH-----HHHHhcCCC-----------cCCC------------CCCeeEEEEeCC-CCCC
Q 025758           93 NHVELSPSDAGFQDRYVVQEVI-----KEMAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLS  143 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~  143 (248)
                      +++.|..+....   +.+.+..     ..+....|.           .+++            -.+|+|+||||+ ..||
T Consensus       560 eNI~YG~~~~t~---e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALD  636 (716)
T KOG0058|consen  560 ENIAYGLDNATD---EEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALD  636 (716)
T ss_pred             HHHhcCCCCCCH---HHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcc
Confidence            455555542221   2222211     112111121           2332            348999999999 7899


Q ss_pred             HHHHHHHHHHHHHhcCCeeEEEEecCCCcccH
Q 025758          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTE  175 (248)
Q Consensus       144 ~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~  175 (248)
                      .+....+-+.+++..++.++|+|+|+...+..
T Consensus       637 aeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~  668 (716)
T KOG0058|consen  637 AESEYLVQEALDRLMQGRTVLVIAHRLSTVRH  668 (716)
T ss_pred             hhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh
Confidence            88888888888887777889999998765443

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.11  E-value=3.3e-10  Score=92.25  Aligned_cols=56  Identities=9%  Similarity=0.124  Sum_probs=41.8

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+++++++||| ..||+.....+.+++.+... +..+|++||+.. ....+.+|+..+
T Consensus       155 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l  212 (255)
T cd03236         155 ARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL  212 (255)
T ss_pred             HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence            347899999999 89999999999999987754 356777777654 445666776444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
1sxj_E	354	Crystal Structure Of The Eukaryotic Clamp Loader (R		2e-48
1iqp_A	327	Crystal Structure Of The Clamp Loader Small Subunit		4e-37
2chq_A	319	Replication Factor C Adpnp Complex Length = 319		3e-36
2chg_A	226	Replication Factor C Domains 1 And 2 Length = 226		4e-36
1sxj_C	340	Crystal Structure Of The Eukaryotic Clamp Loader (R		3e-31
1sxj_D	353	Crystal Structure Of The Eukaryotic Clamp Loader (R		2e-29
1sxj_B	323	Crystal Structure Of The Eukaryotic Clamp Loader (R		1e-20
3u5z_B	324	Structure Of T4 Bacteriophage Clamp Loader Bound To		4e-14
1njg_A	250	Nucleotide-Free Form Of An Isolated E. Coli Clamp L		2e-07
3glh_B	376	Crystal Structure Of The E. Coli Clamp Loader Bound		2e-07
1jr3_A	373	Crystal Structure Of The Processivity Clamp Loader		3e-07
3glf_B	395	Crystal Structure Of The Ecoli Clamp Loader Bound T		3e-07
1xxi_B	368	Adp Bound E. Coli Clamp Loader Complex Length = 368		3e-07
3glg_B	395	Crystal Structure Of A Mutant (Gammat157a) E. Coli		4e-07
1ixr_C	312	Ruva-Ruvb Complex Length = 312		3e-04
1ixs_B	318	Structure Of Ruvb Complexed With Ruva Domain Iii Le		3e-04
1hqc_A	324	Structure Of Ruvb From Thermus Thermophilus Hb8 Len		4e-04

>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 354

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 158/240 (65%), Gaps = 10/240 (4%)
Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           LWVDKYRPK+L+ +  ++++   LK L  + +D PHLL YGP G+GKKT  MALL  +FG
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG  ++K++ + + + A +R   LEL  +SS  H+E++PSD G  DR V+QE++KE+A+ 
Sbjct: 63  PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
             +D +  +      +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +  
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
            I+S+CL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+
Sbjct: 180 PIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239

>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 32/227 (14%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK T  +AL R++FG  
Sbjct: 15  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG-- 72
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                   + W+                  N +EL+ SD   +   V++E +KE A+ +P
Sbjct: 73  --------ENWR-----------------HNFLELNASDE--RGINVIREKVKEFARTKP 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
           I   G   FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC 
Sbjct: 106 I---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             R     +E I K L +IA+ EGL+L       +   +   +RRAI
Sbjct: 163 IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI 209

>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex Length = 319

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                    + W+                  N +E++ SD    D  VV+  IKE A+  
Sbjct: 65  ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI   G   FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 Length = 226

Iteration: 1
 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                    + W+                  N +E++ SD    D  VV+  IKE A+  
Sbjct: 65  ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI   G   FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 32/234 (13%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+TLD+V    ++   ++K V E   PHLLFYGPPG+GK + I+AL R+++G  
Sbjct: 15  WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                   K +       N+ LEL           +  D G     VV+  IK+ A  R 
Sbjct: 73  --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
           I +K   GFK+++L+E D ++  AQ++LRR +E+Y+ + R  +  N + K+T A+ S+C 
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
             R     +E I + +  +   E L+L       L E SN  +RR +   ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216

>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 35/234 (14%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRPK LD+V         LKK +   + PH+LFYGPPG+GK + I+AL ++++GP 
Sbjct: 27  WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
             K ++                          +EL+ SD   +   +V+E +K  A+   
Sbjct: 87  LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
           ++P    ++      +K+++L+E D ++ +AQ +LRRTME YS   R  L CN  +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            + S+C   R  +      +  L FI+++E ++   G   R+ + S   LRR I
Sbjct: 179 PLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGI 232

>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 33/234 (14%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ L  ++ +++    L+++  + + PH++  G PG GK T +  L  ++ G  
Sbjct: 11  WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR- 69
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNR 121
                                      S A+ V EL+ SD    D  VV+  IK  A+ +
Sbjct: 70  ---------------------------SYADGVLELNASDDRGID--VVRNQIKHFAQKK 100
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                GK   K+++L+E D ++  AQ +LRRTME YS S R    CN S+K+ E ++S+C
Sbjct: 101 LHLPPGKH--KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
             +R +  ++E ++K L  I K E ++  +     +   +   +R+AI + ++ 
Sbjct: 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212

>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4 Clamp, Primer-Template Dna, And Atp Analog Length = 324

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 48/213 (22%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGP-PGSGKKTLIMALLRQVFGPGAE 64
           KYRP T+D+ I+     +  K + ++   PH++ + P PG+GK T+  AL   V    A+
Sbjct: 19  KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NAD 75
Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
            + V     KID     +   LT  +SA         A F  R                 
Sbjct: 76  MMFVNGSDCKIDF----VRGPLTNFASA---------ASFDGRQ---------------- 106
Query: 125 TKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
                  KV+V++E D+    E+Q  LR  ME YS++C +I+  N+   + + ++SRC  
Sbjct: 107 -------KVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159
Query: 184 IRINSPTEE-------QIVKVLEFIAKKEGLQL 209
           I    PT+E       Q+++ L  I K EG+ +
Sbjct: 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI 192

>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit Length = 250

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 16  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 75
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 76  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 126
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 127 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 177
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 178 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 225

>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide Length = 376

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 12  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 71
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 72  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 122
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 123 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 173
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 174 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 221

>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii Length = 373

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 9   KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 69  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 120 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 218

>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer-template Dna Length = 395

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 31  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 91  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 142 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 193 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 240

>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex Length = 368

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 9   KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 69  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 120 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 218

>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna Length = 395

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 31  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 91  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 142 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 193 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 240

>pdb|1IXR|C Chain C, Ruva-Ruvb Complex Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +       L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +       L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +       L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	2e-98
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	5e-83
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	5e-80
2chg_A	226	Replication factor C small subunit; DNA-binding pr	4e-63
2chq_A	319	Replication factor C small subunit; DNA-binding pr	1e-62
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	5e-60
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	1e-57
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	7e-47
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	4e-46
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	5e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	3e-10
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	6e-10
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	7e-07
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	3e-06
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	1e-05
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	1e-05
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	2e-05
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	2e-05
3pvs_A	447	Replication-associated recombination protein A; ma	4e-05
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	4e-05
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	7e-05
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	3e-04
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	4e-04
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	8e-04

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354

 Score =  290 bits (743), Expect = 2e-98
 Identities = 97/244 (39%), Positives = 157/244 (64%), Gaps = 10/244 (4%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           LWVDKYRPK+L+ +  ++++   LK L  + +D PHLL YGP G+GKKT  MALL  +FG
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG  ++K++ + +     + N  LEL  +SS  H+E++PSD G  DR V+QE++KE+A+ 
Sbjct: 63  PGVYRLKIDVRQFV---TASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119

Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
             +D +  +      +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +  
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179

Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
            I+S+CL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+
Sbjct: 180 PIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239

Query: 235 CRVQ 238
             + 
Sbjct: 240 MALN 243

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353

 Score =  251 bits (642), Expect = 5e-83
 Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 21/239 (8%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             WV+KYRPK LD+V         LKK +   + PH+LFYGPPG+GK + I+AL ++++G
Sbjct: 25  QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P   K ++               LEL   S    + +         R  V +  K     
Sbjct: 85  PDLMKSRI---------------LELNA-SDERGISIVREKVKNFARLTVSKPSK----- 123

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
             ++      +K+++L+E D ++ +AQ +LRRTME YS   R  L CN  +++ + + S+
Sbjct: 124 HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
           C   R  +      +  L FI+++E ++   G   R+ + S   LRR I   ++     
Sbjct: 184 CSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGA 242

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327

 Score =  242 bits (620), Expect = 5e-80
 Identities = 88/247 (35%), Positives = 128/247 (51%), Gaps = 32/247 (12%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK T  +AL R++FG
Sbjct: 13  KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG 72

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                       W+                  N +EL+ SD    +  V++E +KE A+ 
Sbjct: 73  EN----------WR-----------------HNFLELNASDERGIN--VIREKVKEFART 103

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           +PI   G   FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SR
Sbjct: 104 KPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL 240
           C   R     +E I K L +IA+ EGL+L       +   +   +RRAI   +       
Sbjct: 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 220

Query: 241 RFTMPSV 247
           + T  +V
Sbjct: 221 KITDENV 227

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score =  195 bits (499), Expect = 4e-63
 Identities = 85/228 (37%), Positives = 118/228 (51%), Gaps = 32/228 (14%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                                          N +E++ SD    D  VV+  IKE A+  
Sbjct: 66  ---------------------------NWRDNFIEMNASDERGID--VVRHKIKEFARTA 96

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI       FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PIGGAP---FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score =  197 bits (503), Expect = 1e-62
 Identities = 86/228 (37%), Positives = 120/228 (52%), Gaps = 32/228 (14%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                      W+                  N +E++ SD    D  VV+  IKE A+  
Sbjct: 66  ----------NWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI       FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PIGGAP---FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340

 Score =  191 bits (488), Expect = 5e-60
 Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 32/229 (13%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           + WV+KYRP+TLD+V    ++   ++K V E   PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 13  LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                       +                     +EL+ SD    D  VV+  IK+ A  
Sbjct: 73  K----------NYS-----------------NMVLELNASDDRGID--VVRNQIKDFAST 103

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           R I     +GFK+++L+E D ++  AQ++LRR +E+Y+ + R  +  N + K+T A+ S+
Sbjct: 104 RQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           C   R     +E I + +  +   E L+L       L E SN  +RR +
Sbjct: 161 CTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVL 209

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323

 Score =  185 bits (471), Expect = 1e-57
 Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 31/229 (13%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           + WV+KYRP+ L  ++ +++    L+++  + + PH++  G PG GK T +  L  ++ G
Sbjct: 9   LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                      ++                     +EL+ SD    D  VV+  IK  A+ 
Sbjct: 69  R----------SYA-----------------DGVLELNASDDRGID--VVRNQIKHFAQK 99

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           +     GK   K+++L+E D ++  AQ +LRRTME YS S R    CN S+K+ E ++S+
Sbjct: 100 KLHLPPGK--HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           C  +R +  ++E ++K L  I K E ++  +     +   +   +R+AI
Sbjct: 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAI 206

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score =  161 bits (410), Expect = 7e-47
 Identities = 46/259 (17%), Positives = 81/259 (31%), Gaps = 66/259 (25%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQD-----------------CPHLLFYGPP 43
            LW  KY P  L QV  ++     LK  +   +                     + YGPP
Sbjct: 27  KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 86

Query: 44  GSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103
           G GK T    + ++                    G   +             E + SD  
Sbjct: 87  GIGKTTAAHLVAQE-------------------LGYDIL-------------EQNASD-- 112

Query: 104 FQDR--YVVQEVIKEMAKNRPI---------DTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
              R   ++   +K    N  +                  V++++EVD +S   +  + +
Sbjct: 113 --VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQ 170

Query: 153 TMEKYSASCRLILC-CN-SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP 210
             +    +   ++  CN  +          CL+I+   P    I   L  IA +E  +L 
Sbjct: 171 LAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD 230

Query: 211 SGFATRLAEKSNRSLRRAI 229
                RL + +   +R+ I
Sbjct: 231 PNVIDRLIQTTRGDIRQVI 249

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Length = 324

 Score =  155 bits (394), Expect = 4e-46
 Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 51/240 (21%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGP-PGSGKKTLIMALLRQVF 59
            +   KYRP T+D+ I+     +  K + ++   PH++ + P PG+GK T+  AL   V 
Sbjct: 14  HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73

Query: 60  GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
                          ++     ID                          V+  +   A 
Sbjct: 74  ADMMF----------VNGSDCKID-------------------------FVRGPLTNFAS 98

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
               D +     KV+V++E D+    E+Q  LR  ME YS++C +I+  N+   + + ++
Sbjct: 99  AASFDGR----QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154

Query: 179 SRCLNIRINSPTEE-------QIVKVLEFIAKKEGLQL--PSGFATRLAEKSNRSLRRAI 229
           SRC  I    PT+E       Q+++ L  I K EG+ +      A  L +K+    R+ I
Sbjct: 155 SRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAA-LVKKNFPDFRKTI 213

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334

 Score = 75.1 bits (185), Expect = 5e-16
 Identities = 43/229 (18%), Positives = 69/229 (30%), Gaps = 50/229 (21%)

Query: 18  HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVF---GPGAE--------K 65
            +   + L          H LL    PG G   LI AL R +      G +        +
Sbjct: 7   LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66

Query: 66  VKVENKTWKIDAGSRNIDLELTTLSSANHV---ELSPSDAGFQDRYVVQEV--IKEMAKN 120
                    + AG               H     L+P      +   V  V  + E    
Sbjct: 67  --------LMQAG--------------THPDYYTLAPEKGK--NTLGVDAVREVTEKLNE 102

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
                 G  G KV+ + +   L+  A ++L +T+E+  A     L      ++   +RSR
Sbjct: 103 HA--RLG--GAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           C    +  P E+  V  L        + +           S  S   A+
Sbjct: 159 CRLHYLAPPPEQYAVTWLS-----REVTMSQDALLAALRLSAGSPGAAL 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.4 bits (174), Expect = 2e-14
 Identities = 36/250 (14%), Positives = 79/250 (31%), Gaps = 52/250 (20%)

Query: 4   VDKY---RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             KY   R +   +      + Q L +L   +   ++L  G  GSGK  + + +      
Sbjct: 126 FAKYNVSRLQPYLK------LRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCL---- 172

Query: 61  PGAEKVKVENKT---WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
             + KV+ +      W ++  + N    +  +      ++ P+     D     ++    
Sbjct: 173 --SYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 118 AKNRPIDTKGKRGFK--VLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
            +         + ++  +LVL  V +           +    ++ SC+ IL      +VT
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNA----------KAWNAFNLSCK-ILLTTRFKQVT 278

Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET 234
           + + +        + T   +      +   E   L       L  +    L R     E 
Sbjct: 279 DFLSA-------ATTTHISLDHHSMTLTPDEVKSL---LLKYLDCRPQ-DLPR-----EV 322

Query: 235 CRVQQLRFTM 244
                 R ++
Sbjct: 323 LTTNPRRLSI 332

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 38/260 (14%), Positives = 81/260 (31%), Gaps = 68/260 (26%)

Query: 19  QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK--VE-----NK 71
           +D+    K ++++++  H++      SG   L   LL +      E V+  VE     N 
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK----QEEMVQKFVEEVLRINY 91

Query: 72  TWKIDA-GSRNIDLELTTLSSANHVELSPSDAG-FQDRYV--------VQEVIKEMAKNR 121
            + +    +      + T       +   +D   F    V        +++ + E+   +
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 122 PIDTKGKRGF-K-VLVLNEVDKLSREAQH-------SLRRTMEKYSASCRLILCCNSSSK 172
            +   G  G  K  + L+       + +        +L+               CNS   
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN--------------CNSPET 197

Query: 173 VTEAIRSRCLNIRIN-----SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS-NRSL- 225
           V E ++     I  N       +    +++    A+   L         L  K     L 
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---------LKSKPYENCLL 248

Query: 226 -------RRAILSFE-TCRV 237
                   +A  +F  +C++
Sbjct: 249 VLLNVQNAKAWNAFNLSCKI 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 45/302 (14%), Positives = 79/302 (26%), Gaps = 119/302 (39%)

Query: 25  LKKL-VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK------IDA 77
           LK L    QD P  +    P        ++++       AE ++    TW        D 
Sbjct: 308 LKYLDCRPQDLPREVLTTNP------RRLSII-------AESIRDGLATWDNWKHVNCDK 354

Query: 78  GSRNIDLELTTLSSANH----VELS--PSDA-----------GFQDRYVVQEVIKEMAKN 120
            +  I+  L  L  A +      LS  P  A               +  V  V+ ++ K 
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 121 RPIDTKGKRGFKV---LVLNEVDKLSREAQ-HSLRRTMEKYSASCRLILCCNSSSKVTE- 175
             ++ + K        + L    KL  E   H  R  ++ Y+         +        
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTF--DSDDLIPPYLD 470

Query: 176 -----------------------------------AIRSRCLN----------------- 183
                                               IR                      
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 184 ---IRINSPTEEQIVK-VLEFIAKKE--------------GLQLPSGFATRLAEKSNRSL 225
              I  N P  E++V  +L+F+ K E               L         + E++++ +
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA---IFEEAHKQV 587

Query: 226 RR 227
           +R
Sbjct: 588 QR 589

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Length = 250

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 27/232 (11%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA-LLRQVFGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++  ++A  L    G 
Sbjct: 16  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 75

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--IKEMAK 119
            A    V +   +I+ G R +DL          +E+   DA    R  V++   + +  +
Sbjct: 76  TATPCGVCDNCREIEQG-RFVDL----------IEI---DAA--SRTKVEDTRDLLDNVQ 119

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
             P   +G+  FKV +++EV  LSR + ++L +T+E+     + +L      K+   I S
Sbjct: 120 YAP--ARGR--FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 175

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
           RCL   + +   EQI   LE I  +E +         LA  +  SLR A LS
Sbjct: 176 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA-LS 226

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368

 Score = 57.6 bits (139), Expect = 6e-10
 Identities = 46/277 (16%), Positives = 90/277 (32%), Gaps = 47/277 (16%)

Query: 5   DKYRPKTLDQVIVHQD----IAQNLKKLVTE-QDCPH-LLFYGPPGSGKKTLIMAL---- 54
           D   P+   Q +V Q      A  + +++ E +     +L  G PG+GK  + M +    
Sbjct: 35  DALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94

Query: 55  ---LRQVFGPGAEKVKVENKTW--------------KIDAGSRNIDLELTTLSSANHVEL 97
                     G+E   +E                          + L    + ++     
Sbjct: 95  GPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGF 154

Query: 98  SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRG----FKVLVLNEVDKLSREAQHSLRRT 153
               +G      ++  ++E    +  + + +        VL ++EV  L  E+   L R 
Sbjct: 155 LALFSGDTGE--IKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRA 212

Query: 154 MEKYSASCRLILCCN------------SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFI 201
           +E   A   LI+  N            S   +   +  R L +     +E+   ++L   
Sbjct: 213 LESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIR 271

Query: 202 AKKEGLQLPSGFATRLAEKSNR-SLRRAILSFETCRV 237
            ++E +++     T L       SLR AI       +
Sbjct: 272 CEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384

 Score = 48.6 bits (115), Expect = 7e-07
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 29/239 (12%)

Query: 7   YRPKTLDQVIVHQD-----IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
              K +      ++      A  ++  V  +     LF G  G+GK  +   +  ++   
Sbjct: 17  SVFKEI----PFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI--- 69

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             E  K + +   +     N   E+     A    L+    GF        + + + K +
Sbjct: 70  -EEVKKEDEEYKDVKQAYVNCR-EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIK 127

Query: 122 PIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSS---SKVTEA 176
                 +    ++ L+EVD L   R     L + +   + +  +I+  N       +   
Sbjct: 128 NGTRNIR---AIIYLDEVDTLVKRRGGDIVLYQLLRSDA-NISVIMISNDINVRDYMEPR 183

Query: 177 IRSRC-LNIRINSPTEEQIVKVLEFI---AKKEGLQLPSG--FATRLAEKSNRSLRRAI 229
           + S    ++       EQ+  +L         +G        +   ++ K +   R+A+
Sbjct: 184 VLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAV 242

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 37/259 (14%), Positives = 76/259 (29%), Gaps = 49/259 (18%)

Query: 7   YRPKTL---DQVIVHQDIAQNLKKLVTEQDC--PHLLFYGPPGSGKKTLIMALLRQVFGP 61
           Y PK L   +Q +  Q +   L   +       P     G PG+GK   +  L       
Sbjct: 14  YVPKRLPHREQQL--QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL---- 67

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                      +K    +R + +      +   +    + +             E     
Sbjct: 68  -----------YKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALL 116

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----ASCRLILCCNS---SSKVT 174
               + +  +  LVL++   L+ +   +  R  ++          L++  ++    + + 
Sbjct: 117 VEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176

Query: 175 EAIRSRCLNIRINSP--TEEQIVK------------------VLEFIAKKEGLQLPSGFA 214
            + R       I     T++QI                    +L+ IA   G Q P    
Sbjct: 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN 236

Query: 215 TRLAEKSNRSLRRAILSFE 233
              A  +   L R+  + +
Sbjct: 237 RGDARLAIDILYRSAYAAQ 255

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Length = 373

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 31/234 (13%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA-LLRQVFGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++  ++A  L    G 
Sbjct: 9   KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA----GFQDRYVVQEVIKEM 117
            A    V +   +I+ G R +DL          +E+   DA      +D    ++ + + 
Sbjct: 69  TATPCGVCDNCREIEQG-RFVDL----------IEI---DAASRTKVED---TRD-LLDN 110

Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
            +  P   +G+  FKV +++EV  LSR + ++L +T+E+     + +L      K+   I
Sbjct: 111 VQYAP--ARGR--FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
            SRCL   + +   EQI   LE I  +E +         LA  +  SLR A LS
Sbjct: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA-LS 219

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 12/70 (17%)

Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTL--IMAL-----L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL  ++A      L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66

Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTL--IMAL-----L 55
          RP   D  I  + I +NL   +       +   H+LF GP G GK TL  I++      +
Sbjct: 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI 83

Query: 56 RQVFGPGAEK 65
          +    P  EK
Sbjct: 84 KTTAAPMIEK 93

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 12/70 (17%)

Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTL--IMAL-----L 55
          RPK+LD+ I  +++ + L   +       +   H+L  GPPG GK TL  I+A      +
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79

Query: 56 RQVFGPGAEK 65
              GP   K
Sbjct: 80 HVTSGPVLVK 89

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 8  RPKTLDQVIVHQD--IAQN--LKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA 53
          RP+ L Q  + Q   +A    L + + E    H ++ +GPPG+GK TL  ++A
Sbjct: 21 RPENLAQY-IGQQHLLAAGKPLPRAI-EAGHLHSMILWGPPGTGKTTLAEVIA 71

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 19/137 (13%)

Query: 107 RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILC 166
           R  + +V+ +           +    VL ++EV  L  E    L R +E   A   +I  
Sbjct: 276 RGEINKVVNKYID----QGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPI-VIFA 330

Query: 167 CNSSSKVTEAI-------------RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213
            N  + V                   R + IR    T +++ ++++  A+ EG+ +    
Sbjct: 331 SNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEA 390

Query: 214 ATRLAEKSNR-SLRRAI 229
              L E   + +LR ++
Sbjct: 391 LNHLGEIGTKTTLRYSV 407

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score = 42.0 bits (98), Expect = 7e-05
 Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 58/223 (26%)

Query: 17  VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
           +  + A+    L  E    H+ F G PG+GK T+ + +   +   G              
Sbjct: 50  LLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY------------- 96

Query: 77  AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK-----EMAKNRPIDTKGKRGF 131
                       +   + V ++  D     +Y+     K     + A             
Sbjct: 97  ------------VRKGHLVSVTRDD--LVGQYIGHTAPKTKEVLKRAMG----------- 131

Query: 132 KVLVLNEVDKLSR---------EAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAI 177
            VL ++E   L R         EA   L + ME       +IL   +       +     
Sbjct: 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191

Query: 178 RSR-CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219
           RSR   +I     ++E++ ++   +   +  Q+     T L  
Sbjct: 192 RSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRA 234

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Length = 387

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 38/228 (16%), Positives = 84/228 (36%), Gaps = 27/228 (11%)

Query: 19  QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78
           + +A+ L   +  +   + L YG  G+GK  +   +LR+          +E +   +   
Sbjct: 29  RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR----------LEARASSLGVL 78

Query: 79  SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNE 138
            + I +      +   V  + ++A           + E+ +         RG  ++VL+E
Sbjct: 79  VKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDE 138

Query: 139 VDKL-----SREAQHSLRRTMEKYSASCRLILCCNSS-----SKVTEAIRSRCLNIRINS 188
           +D L      ++  + + R  ++      + L   ++       +   ++S    + +  
Sbjct: 139 IDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVF 198

Query: 189 P--TEEQIVKVLEF---IAKKEGLQLPSG--FATRLAEKSNRSLRRAI 229
           P  T  Q+  +LE     A   G+  P        LA + +   RRA+
Sbjct: 199 PPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRAL 246

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 39/226 (17%), Positives = 79/226 (34%), Gaps = 28/226 (12%)

Query: 19  QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78
           + IA  L  L  E+   ++  YG  G+GK  ++  +L ++      K K       I+  
Sbjct: 30  RKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV----YINT- 84

Query: 79  SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNE 138
                 ++ T       +L  S         +          + +   G +   V+VL+E
Sbjct: 85  -----RQIDTPYRV-LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQ--VVIVLDE 136

Query: 139 VDKLSR----EAQHSLRRTMEKYSASCRLILCCNSSSKVTE----AIRSRCLNIRI--NS 188
           +D   +    +  + L R   + + S    +   +  K  +     ++S      I    
Sbjct: 137 IDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPP 196

Query: 189 PTEEQIVKVLE---FIAKKEGLQLPSG--FATRLAEKSNRSLRRAI 229
              E++  +L     +A K G+   +       LA + +   RRA+
Sbjct: 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRAL 242

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178

 Score = 38.1 bits (88), Expect = 8e-04
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 16/156 (10%)

Query: 36  HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95
            ++  G PG GK TL+  ++ ++   G   +    +  +     +     + T      +
Sbjct: 2   KIIITGEPGVGKTTLVKKIVERL---GKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI 58

Query: 96  ELSPSDAGFQD--RYVV----QEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK---LSREA 146
             S      +    Y V     E +      R      K   KV++++E+ K    S++ 
Sbjct: 59  FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF 118

Query: 147 QHSLRRTMEKYSASCRLILCC--NSSSKVTEAIRSR 180
           +  +R+ M     +  ++          + + IR  
Sbjct: 119 RDLVRQIMH--DPNVNVVATIPIRDVHPLVKEIRRL 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	100.0
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	100.0
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	100.0
2chq_A	319	Replication factor C small subunit; DNA-binding pr	100.0
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	100.0
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	100.0
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.98
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.97
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.97
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.96
3pvs_A	447	Replication-associated recombination protein A; ma	99.96
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.96
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.96
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.94
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.94
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.93
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.93
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.93
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.92
3bos_A	242	Putative DNA replication factor; P-loop containing	99.92
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.9
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.9
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.9
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.9
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.89
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.89
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.88
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.88
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.88
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.87
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.87
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.87
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.87
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.86
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.86
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.86
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.86
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.85
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.85
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.85
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.85
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.84
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.83
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.83
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.83
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.83
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.83
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.83
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.82
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.82
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.82
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.82
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.81
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.8
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.8
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	99.8
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.8
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.79
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.78
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.78
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.78
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.77
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.77
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.77
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.77
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.76
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.76
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.76
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.75
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.74
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.73
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.7
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.68
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.66
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.65
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.64
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.64
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.63
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.62
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.6
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.56
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.54
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.53
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.51
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.51
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.49
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.49
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.49
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.49
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.49
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.49
3co5_A	143	Putative two-component system transcriptional RES	99.48
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.48
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.46
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.46
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.46
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.46
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.45
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.45
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.45
1g6h_A	257	High-affinity branched-chain amino acid transport	99.44
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.44
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.43
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.43
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.43
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.42
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.42
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.41
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.41
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.41
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.4
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.39
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.39
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.38
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.38
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.36
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.36
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.33
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	99.33
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.32
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.32
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.32
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.3
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.3
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.3
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.29
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.29
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.27
2fna_A	357	Conserved hypothetical protein; structural genomic	99.24
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	99.23
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.23
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.21
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.2
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.2
1tue_A	212	Replication protein E1; helicase, replication, E1E	99.2
2qgz_A	308	Helicase loader, putative primosome component; str	99.2
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.19
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.19
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.15
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.11
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.09
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.08
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.04
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.99
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.96
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.94
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.93
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.93
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.92
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.91
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.91
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.88
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.87
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.85
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.82
3f8t_A	506	Predicted ATPase involved in replication control,	98.81
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.81
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.79
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.78
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.76
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.75
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.71
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.7
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.68
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.68
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.68
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.62
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.62
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.58
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	98.58
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.54
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.51
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.49
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.47
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.46
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.45
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.44
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.44
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.44
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.43
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.42
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.41
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.4
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.39
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.38
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.36
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.34
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.32
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.32
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.29
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.26
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.25
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.21
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.21
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.21
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.18
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.17
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.16
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.15
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.14
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.12
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	98.12
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.07
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.07
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	98.03
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.03
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.03
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.01
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.0
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.99
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.98
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.98
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.96
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	97.95
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.95
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.95
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.95
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.94
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.93
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.93
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.92
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.92
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.9
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.88
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.87
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.86
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.84
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.84
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.83
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.83
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.82
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.81
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	97.79
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.79
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.79
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.78
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.77
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	97.76
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.75
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.75
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.74
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.73
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.73
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.73
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.73
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.72
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.72
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.72
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.72
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.72
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.7
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.68
2og2_A	359	Putative signal recognition particle receptor; nuc	97.68
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.66
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.66
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.65
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.65
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.64
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.64
1via_A	175	Shikimate kinase; structural genomics, transferase	97.64
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.63
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.62
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.62
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	97.62
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.61
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.6
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.6
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.59
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.59
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.59
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.57
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.57
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.56
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.56
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.55
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.55
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.54
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.54
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.54
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.53
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.53
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.52
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.52
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.52
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.52
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.51
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.51
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.51
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.51
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.5
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.49
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.49
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.48
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	97.48
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.47
3io5_A	333	Recombination and repair protein; storage dimer, i	97.47
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.47
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.47
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.47
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.46
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.46
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.46
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.45
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.45
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.44
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.44
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.43
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.42
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.42
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.42
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.42
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.42
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.41
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.41
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.4
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.4
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.39
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.38
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.38
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.38
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.37
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.37
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.37
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.36
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.34
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.34
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	97.34
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.34
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.33
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.33
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.33
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.32
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.32
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	97.32
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.32
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.32
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.31
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	97.31
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.3
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.3
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.29
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	97.29
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.28
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.28
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	97.27
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.26
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.26
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.25
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.24
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.24
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.24
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.23
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.23
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.23
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.23
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.22
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.21
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	97.19
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	97.19
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.18
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	97.17
3h1t_A	590	Type I site-specific restriction-modification syst	97.16
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.15
2xxa_A	433	Signal recognition particle protein; protein trans	97.12
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.12
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.11
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	97.1
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.09
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.08
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.07
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.06
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.06
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.05
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	97.05
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.05
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.03
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.02
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.99
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.99
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	96.99
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.98
3bor_A	237	Human initiation factor 4A-II; translation initiat	96.97
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.96
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.96
3ice_A	422	Transcription termination factor RHO; transcriptio	96.96
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.94
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.93
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.92
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.91
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	96.91
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	96.9
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.9
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.88
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	96.86
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.86
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.85
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.84
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	96.82
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	96.8
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	96.8
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.8
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.79
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.77
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.76
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.76
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	96.75
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.73
2eyq_A	1151	TRCF, transcription-repair coupling factor; MFD, S	96.73
1wp9_A	494	ATP-dependent RNA helicase, putative; ATPase, DNA	96.72
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	96.72
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.71
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	96.7
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	96.7
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.7
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.7
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.68
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.67
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	96.67
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.67
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.67
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.66
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.66
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.66
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	96.65
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	96.64
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.64
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.64
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.63
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.62
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.62
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.6
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.59
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.58
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.57
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.57
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.56
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.56
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.56
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	96.55
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	96.54
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.53
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.52
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.52
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.51
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.5
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.5
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.5
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	96.5
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.48
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.47
2whx_A	618	Serine protease/ntpase/helicase NS3; transcription	96.46
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.45
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	96.44
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.43
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.42
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.41
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.38
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.37
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.36
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.36
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.35
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.34
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.33
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	96.33
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.32
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.32
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	96.31
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	96.3
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.28
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.28
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.27
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.27
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.26
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.26
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.26
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.25
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.24
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.23
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.22
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.22
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.22
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.22
2jlq_A	451	Serine protease subunit NS3; ribonucleoprotein, nu	96.2
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.2
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	96.2
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.19
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.18
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	96.17
3l0o_A	427	Transcription termination factor RHO; helicase, RH	96.16
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.16
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.16
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.15
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.14
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.14
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.12

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=7.2e-39  Score=271.87  Aligned_cols=241  Identities=40%  Similarity=0.720  Sum_probs=182.9

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHh-hcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~-~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      |+|+|||||++|++++|++.+++.+..++ ..++.++++|+||+|+||||+++++++.+.++..|.+.+++..+...+..
T Consensus         2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~   81 (354)
T 1sxj_E            2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR   81 (354)
T ss_dssp             --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred             CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence            59999999999999999999999999999 88888889999999999999999999988899988888877665422222


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCc----CCC-CCCeeEEEEeCCCCCCHHHHHHHHHHH
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID----TKG-KRGFKVLVLNEVDKLSREAQHSLRRTM  154 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~viiiDE~d~l~~~~~~~ll~~l  154 (248)
                         +..+.......++.+.....+......+++.++.+....+..    +++ ..+++++||||++.|++.+++.|++++
T Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~l  158 (354)
T 1sxj_E           82 ---KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM  158 (354)
T ss_dssp             -------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred             ---cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence               123333333444555554433332223555566554433221    122 457899999999999999999999999


Q ss_pred             HHhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHccccHHHHHHHHH
Q 025758          155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       155 e~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      ++++.++.+|++||++..+.++++|||..+.|++|+.+++.+++..++.++++.++ +++++.+++.++||+|.+++.|+
T Consensus       159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~  238 (354)
T 1sxj_E          159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE  238 (354)
T ss_dssp             HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence            99988899999999999999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHhhhcc-cccC
Q 025758          234 TCRVQQL-RFTM  244 (248)
Q Consensus       234 ~~~~~~~-~~~~  244 (248)
                      .+..... .++.
T Consensus       239 ~~~~~~~~~i~~  250 (354)
T 1sxj_E          239 SMALNNELALKS  250 (354)
T ss_dssp             HHHHTTTTEECS
T ss_pred             HHHHhCCCCcCc
Confidence            9887654 3544

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=1.4e-33  Score=238.23  Aligned_cols=207  Identities=36%  Similarity=0.650  Sum_probs=173.1

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      ++|++||||++|++++|++.+++.|..++..|+.+|++|+||+|+||||+|+++|+.+.+.....               
T Consensus        13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~---------------   77 (340)
T 1sxj_C           13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN---------------   77 (340)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHH---------------
T ss_pred             CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccc---------------
Confidence            58999999999999999999999999999999999999999999999999999999886543210               


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                                  ...++...+.  .....+++.+..+......   ...+++|++|||+|.|...++++|++++|+++..
T Consensus        78 ------------~~~~~~~~~~--~~~~~ir~~i~~~~~~~~~---~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~  140 (340)
T 1sxj_C           78 ------------MVLELNASDD--RGIDVVRNQIKDFASTRQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKN  140 (340)
T ss_dssp             ------------HEEEECTTSC--CSHHHHHTHHHHHHHBCCS---SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             ------------eEEEEcCccc--ccHHHHHHHHHHHHhhccc---CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence                        0122332221  1122344455555532211   1235899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      +.+|+++|.+..+.++++|||..+.|.+++.+++.+++..++.++++.++++.+..++..++|++|.+++.|+.+....
T Consensus       141 ~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~  219 (340)
T 1sxj_C          141 TRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATL  219 (340)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTT
T ss_pred             eEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998876543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=100.00  E-value=1.7e-33  Score=236.17  Aligned_cols=207  Identities=27%  Similarity=0.447  Sum_probs=168.6

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      .+|++||+|++|++++|++.+++.+..++..++.++ ++++||+|+|||++|+++++.+..   .               
T Consensus        14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~---~---------------   75 (324)
T 3u61_B           14 HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA---D---------------   75 (324)
T ss_dssp             SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE---E---------------
T ss_pred             chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC---C---------------
Confidence            479999999999999999999999999999998888 788888999999999999987621   0               


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-HHHHHHHHHHHHHhc
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYS  158 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-~~~~~~ll~~le~~~  158 (248)
                                    .+.+.++..+   ...+.+.+..+....+.    .+.+++++|||+|.+. ...++.|++++++++
T Consensus        76 --------------~~~i~~~~~~---~~~i~~~~~~~~~~~~~----~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~  134 (324)
T 3u61_B           76 --------------MMFVNGSDCK---IDFVRGPLTNFASAASF----DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS  134 (324)
T ss_dssp             --------------EEEEETTTCC---HHHHHTHHHHHHHBCCC----SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG
T ss_pred             --------------EEEEcccccC---HHHHHHHHHHHHhhccc----CCCCeEEEEECCcccCcHHHHHHHHHHHHhCC
Confidence                          1233333322   23345555555554332    3478999999999999 999999999999998


Q ss_pred             CCeeEEEEecCCCcccHHHhhhhheeeecCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHccccHHHHHH
Q 025758          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ-------IVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAIL  230 (248)
Q Consensus       159 ~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~-------~~~il~~~~~~~~~~~~~-~~~~~l~~~~~g~~r~~~~  230 (248)
                      .++.+|+++|.+..+.++++|||..+.|++|+.++       +..++...+.++++.+++ ++++.+++.++||+|.+++
T Consensus       135 ~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~  214 (324)
T 3u61_B          135 SNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG  214 (324)
T ss_dssp             GGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred             CCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence            88999999999999999999999999999999887       445566667788999998 9999999999999999999


Q ss_pred             HHHHHhhhcccccCCCC
Q 025758          231 SFETCRVQQLRFTMPSV  247 (248)
Q Consensus       231 ~l~~~~~~~~~~~~~~v  247 (248)
                      .|+.++ ....++.+.|
T Consensus       215 ~L~~~~-~~~~i~~~~v  230 (324)
T 3u61_B          215 ELDSYS-SKGVLDAGIL  230 (324)
T ss_dssp             HHHHHG-GGTCBCC---
T ss_pred             HHHHHh-ccCCCCHHHH
Confidence            999998 4445655543

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=100.00  E-value=6e-33  Score=231.79  Aligned_cols=210  Identities=40%  Similarity=0.686  Sum_probs=171.1

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      ++|++||+|++|++++|++.+++.+..++..++.++++|+||+|+|||++|+.++..+.++..+.      .+       
T Consensus         5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~------~~-------   71 (319)
T 2chq_A            5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD------NF-------   71 (319)
T ss_dssp             -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHH------HC-------
T ss_pred             ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccC------Ce-------
Confidence            58999999999999999999999999999998888899999999999999999999886543211      00       


Q ss_pred             ccccceeeecccceeeeCCCCc-CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758           81 NIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~  159 (248)
                                    +.+..... +..   ...+.+..+....+.   ..+.+++++|||+|.++...++.|++++++++.
T Consensus        72 --------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~  131 (319)
T 2chq_A           72 --------------IEMNASDERGID---VVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSK  131 (319)
T ss_dssp             --------------EEEETTSTTCTT---TSSHHHHHHHHSCCS---SSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSS
T ss_pred             --------------EEEeCccccChH---HHHHHHHHHHhcCCC---CCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCC
Confidence                          11111111 111   122233434333322   134688999999999999999999999999888


Q ss_pred             CeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      ++.+|++++.+..+.+++.+||..+.|++++.+++..++..++.++++.++++.++.++..++||+|.+++.++.+....
T Consensus       132 ~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~  211 (319)
T 2chq_A          132 SCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG  211 (319)
T ss_dssp             SEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSS
T ss_pred             CCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999887654


Q ss_pred             cccc
Q 025758          240 LRFT  243 (248)
Q Consensus       240 ~~~~  243 (248)
                      ..++
T Consensus       212 ~~i~  215 (319)
T 2chq_A          212 EVVD  215 (319)
T ss_dssp             SCBC
T ss_pred             CCCC
Confidence            3333

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=1.4e-32  Score=230.37  Aligned_cols=208  Identities=41%  Similarity=0.693  Sum_probs=170.5

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      ++|++||+|++|++++|++.+++.+..++..++.++++|+||+|+|||++|+.++..+.++....               
T Consensus        13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~---------------   77 (327)
T 1iqp_A           13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRH---------------   77 (327)
T ss_dssp             SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHH---------------
T ss_pred             CchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccC---------------
Confidence            58999999999999999999999999999999888999999999999999999999875432110               


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                                  ..+.+.+.+.  .......+.+..+....+.   ..+.+.+++|||++.++...++.|++++++++.+
T Consensus        78 ------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~  140 (327)
T 1iqp_A           78 ------------NFLELNASDE--RGINVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSN  140 (327)
T ss_dssp             ------------HEEEEETTCH--HHHHTTHHHHHHHHHSCCG---GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             ------------ceEEeecccc--CchHHHHHHHHHHHhhCCc---CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCC
Confidence                        0122222111  0111123334444433332   1246889999999999999999999999998888


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  240 (248)
                      +.||++++.+..+.+++.+||..+.|++++.+++..++..++.++++.++++.++.++..++||+|.+++.++.+.....
T Consensus       141 ~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  220 (327)
T 1iqp_A          141 VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK  220 (327)
T ss_dssp             EEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred             CeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998875443

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=6.5e-32  Score=228.73  Aligned_cols=210  Identities=33%  Similarity=0.616  Sum_probs=168.3

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      ++|++||+|++|++++|++++++.+..++..++.++++|+||||+||||+|+++++.+.++.....              
T Consensus        25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~--------------   90 (353)
T 1sxj_D           25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS--------------   90 (353)
T ss_dssp             -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT--------------
T ss_pred             ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc--------------
Confidence            489999999999999999999999999999988888999999999999999999998754311110              


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCc-------CCCCCCeeEEEEeCCCCCCHHHHHHHHHH
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-------TKGKRGFKVLVLNEVDKLSREAQHSLRRT  153 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~viiiDE~d~l~~~~~~~ll~~  153 (248)
                                  ..+.+.+.+..  ....+.+.+..+.......       ......+.+++|||++.+++..++.|+++
T Consensus        91 ------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~  156 (353)
T 1sxj_D           91 ------------RILELNASDER--GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRT  156 (353)
T ss_dssp             ------------SEEEECSSSCC--CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHH
T ss_pred             ------------ceEEEcccccc--chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHH
Confidence                        01223322211  1111222233333221110       01124668999999999999999999999


Q ss_pred             HHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       154 le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      +++++....||+++|++..+.+++++||..+.|++++.+++..++..++.++++.+++++++++++.+.||+|.+++.++
T Consensus       157 le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~  236 (353)
T 1sxj_D          157 METYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ  236 (353)
T ss_dssp             HHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            99998888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh
Q 025758          234 TCRVQ  238 (248)
Q Consensus       234 ~~~~~  238 (248)
                      .+...
T Consensus       237 ~~~~~  241 (353)
T 1sxj_D          237 SASKG  241 (353)
T ss_dssp             HTHHH
T ss_pred             HHHHh
Confidence            88754

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.98  E-value=1.8e-31  Score=223.25  Aligned_cols=208  Identities=29%  Similarity=0.511  Sum_probs=171.1

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      ++|++||+|.+|++++|++.+++.+..++..++.++++|+||+|+|||++|+.++..+.++....               
T Consensus         9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~---------------   73 (323)
T 1sxj_B            9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYAD---------------   73 (323)
T ss_dssp             CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHH---------------
T ss_pred             CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccC---------------
Confidence            47999999999999999999999999999999888899999999999999999999875432110               


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                                  ..+.+...+..  ....+.+.+..+...... + ..+.+.+++|||++.++...++.|++++++++.+
T Consensus        74 ------------~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~-~-~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~  137 (323)
T 1sxj_B           74 ------------GVLELNASDDR--GIDVVRNQIKHFAQKKLH-L-PPGKHKIVILDEADSMTAGAQQALRRTMELYSNS  137 (323)
T ss_dssp             ------------HEEEECTTSCC--SHHHHHTHHHHHHHBCCC-C-CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT
T ss_pred             ------------CEEEecCcccc--ChHHHHHHHHHHHhcccc-C-CCCCceEEEEECcccCCHHHHHHHHHHHhccCCC
Confidence                        01222222211  122344455555422111 0 1235889999999999999999999999999888


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      +.+|++++.+..+.++++|||..+.|++++.+++..++..++.++++.++++.++.+++.++||+|.+++.++.+....
T Consensus       138 ~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~  216 (323)
T 1sxj_B          138 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH  216 (323)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999887543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.97  E-value=2e-30  Score=205.11  Aligned_cols=211  Identities=40%  Similarity=0.654  Sum_probs=171.0

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      ++|+++|+|.+|++++|++..++.+..++..++.++++|+||+|+|||++++.++..+.+......              
T Consensus         5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~--------------   70 (226)
T 2chg_A            5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDN--------------   70 (226)
T ss_dssp             CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGG--------------
T ss_pred             hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccc--------------
Confidence            589999999999999999999999999998887778999999999999999999997743321100              


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                                   .+.+.....  .......+.+..+....+.   ....+.+++|||++.++....+.|++++++...+
T Consensus        71 -------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~  132 (226)
T 2chg_A           71 -------------FIEMNASDE--RGIDVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKS  132 (226)
T ss_dssp             -------------EEEEETTCT--TCHHHHHHHHHHHHTSCCS---TTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             -------------eEEeccccc--cChHHHHHHHHHHhcccCC---CccCceEEEEeChhhcCHHHHHHHHHHHHhcCCC
Confidence                         011221111  1112233334444432221   1347889999999999999999999999998888


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  240 (248)
                      ..+|++++.+..+.+++.+|+..+.|++++.+++..++...+.+.++.++++++..++..++||+|.+++.++.++..+.
T Consensus       133 ~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~~  212 (226)
T 2chg_A          133 CRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE  212 (226)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred             CeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999987664


Q ss_pred             ccc
Q 025758          241 RFT  243 (248)
Q Consensus       241 ~~~  243 (248)
                      .++
T Consensus       213 ~I~  215 (226)
T 2chg_A          213 VVD  215 (226)
T ss_dssp             CBC
T ss_pred             eec
Confidence            444

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.97  E-value=2.6e-30  Score=220.43  Aligned_cols=222  Identities=22%  Similarity=0.320  Sum_probs=173.1

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      +|++||+|.+|++++|++.+++.|..++..++.++ ++|+||+|+||||+|+.+++.+.+.......        .|..+
T Consensus         5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~--------~~~~~   76 (373)
T 1jr3_A            5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--------PCGVC   76 (373)
T ss_dssp             CHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSS--------CCSSS
T ss_pred             HHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC--------CCccc
Confidence            69999999999999999999999999999988888 8999999999999999999988765421110        01111


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..|........++.+.+......  .....++.+..+.. .+    ..+.+.|++|||++.++....+.|++++++++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~~----~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~  149 (373)
T 1jr3_A           77 DNCREIEQGRFVDLIEIDAASRT--KVEDTRDLLDNVQY-AP----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH  149 (373)
T ss_dssp             HHHHHHHTSCCSSCEEEETTCSC--CSSCHHHHHHHTTS-CC----SSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHhccCCCceEEecccccC--CHHHHHHHHHHHhh-cc----ccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCc
Confidence            11111111112222333332211  11123444443332 22    1456889999999999999999999999998888


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.+|+++++...+.+++.+||..+.|++++.+++..++..++.++++.++++++..+++.++||+|.+.+.++.+...
T Consensus       150 ~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~  227 (373)
T 1jr3_A          150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS  227 (373)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887643

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.96  E-value=2.9e-28  Score=195.03  Aligned_cols=224  Identities=21%  Similarity=0.299  Sum_probs=167.8

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      +|+++|+|.++++++|++..++.+..++..++.++ ++|+||+|+||||+++.+++.+.+........        +..+
T Consensus        12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~--------~~~~   83 (250)
T 1njg_A           12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP--------CGVC   83 (250)
T ss_dssp             CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC--------CSCS
T ss_pred             HHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------Cccc
Confidence            69999999999999999999999999998887766 99999999999999999999876543110000        1111


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      ..+...........+.+.....  .......+.+..+..     ....+.+.+++|||++.+++...+.|++.+++...+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~  156 (250)
T 1njg_A           84 DNCREIEQGRFVDLIEIDAASR--TKVEDTRDLLDNVQY-----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH  156 (250)
T ss_dssp             HHHHHHHTTCCSSEEEEETTCG--GGHHHHHHHHHSCCC-----SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTT
T ss_pred             HHHHHHhccCCcceEEecCccc--ccHHHHHHHHHHhhh-----chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCc
Confidence            0000000001111222222211  111122222222111     011346789999999999999999999999987778


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  240 (248)
                      ..+|++++....+.+++.+|+..+.|++++.+++.+++...+.+++..++++.++.+++.++|++|.+.++++.+...+.
T Consensus       157 ~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~  236 (250)
T 1njg_A          157 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD  236 (250)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTT
T ss_pred             eEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC
Confidence            88999999988999999999999999999999999999999999999999999999999999999999999998875443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.96  E-value=9e-29  Score=215.06  Aligned_cols=197  Identities=23%  Similarity=0.337  Sum_probs=152.4

Q ss_pred             CccccCCCCCcccccccHHHH---HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758            2 LWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~---~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~   78 (248)
                      +|+++|||++|++++|+++++   +.|...+..++.++++|+|||||||||+|+++++.+.++                 
T Consensus        15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-----------------   77 (447)
T 3pvs_A           15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-----------------   77 (447)
T ss_dssp             CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-----------------
T ss_pred             ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-----------------
Confidence            799999999999999999999   899999999998889999999999999999999965211                 


Q ss_pred             CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~  158 (248)
                                     +..+.....+.   ..+.+.+........     ...+.++||||++.++...++.|++.+++  
T Consensus        78 ---------------f~~l~a~~~~~---~~ir~~~~~a~~~~~-----~~~~~iLfIDEI~~l~~~~q~~LL~~le~--  132 (447)
T 3pvs_A           78 ---------------VERISAVTSGV---KEIREAIERARQNRN-----AGRRTILFVDEVHRFNKSQQDAFLPHIED--  132 (447)
T ss_dssp             ---------------EEEEETTTCCH---HHHHHHHHHHHHHHH-----TTCCEEEEEETTTCC------CCHHHHHT--
T ss_pred             ---------------eEEEEeccCCH---HHHHHHHHHHHHhhh-----cCCCcEEEEeChhhhCHHHHHHHHHHHhc--
Confidence                           01222222222   123333333322111     23678999999999999999999999997  


Q ss_pred             CCeeEEEEecCC--CcccHHHhhhhheeeecCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHccccHHHHH
Q 025758          159 ASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK-------EGLQLPSGFATRLAEKSNRSLRRAI  229 (248)
Q Consensus       159 ~~~~~Il~t~~~--~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~-------~~~~~~~~~~~~l~~~~~g~~r~~~  229 (248)
                      ....+|++|+..  ..+.+++.|||.++.|++++.+++..++...+.+       +++.+++++++.|++.++||+|.++
T Consensus       133 ~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll  212 (447)
T 3pvs_A          133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL  212 (447)
T ss_dssp             TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred             CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence            346677776544  3688999999999999999999999999999887       5677999999999999999999999


Q ss_pred             HHHHHHhhhcc
Q 025758          230 LSFETCRVQQL  240 (248)
Q Consensus       230 ~~l~~~~~~~~  240 (248)
                      +.|+.+...+.
T Consensus       213 n~Le~a~~~a~  223 (447)
T 3pvs_A          213 NTLEMMADMAE  223 (447)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHhcc
Confidence            99999987654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.96  E-value=7.5e-28  Score=202.62  Aligned_cols=203  Identities=20%  Similarity=0.200  Sum_probs=159.0

Q ss_pred             cccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccce
Q 025758           16 IVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH   94 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (248)
                      ..++++++.|...+..++.+| ++|+||+|+|||++|+.+|+.+.|........        |+.|..|........++.
T Consensus         5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~--------c~~c~~c~~~~~~~~~d~   76 (334)
T 1a5t_A            5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKS--------CGHCRGCQLMQAGTHPDY   76 (334)
T ss_dssp             GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBC--------CSCSHHHHHHHHTCCTTE
T ss_pred             CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCC--------CCCCHHHHHHhcCCCCCE
Confidence            457889999999999999998 99999999999999999999998876422111        333333333333344555


Q ss_pred             eeeCCCCc-CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcc
Q 025758           95 VELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (248)
Q Consensus        95 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~  173 (248)
                      ..+.++.. .......+++.++.+.. .+.    .++++|+||||+|.|+.+++++|++++|+++.++.||++|+++..+
T Consensus        77 ~~~~~~~~~~~~~i~~ir~l~~~~~~-~~~----~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l  151 (334)
T 1a5t_A           77 YTLAPEKGKNTLGVDAVREVTEKLNE-HAR----LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERL  151 (334)
T ss_dssp             EEECCCTTCSSBCHHHHHHHHHHTTS-CCT----TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred             EEEeccccCCCCCHHHHHHHHHHHhh-ccc----cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhC
Confidence            56655421 11222335555544332 222    4578999999999999999999999999999999999999999999


Q ss_pred             cHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHh
Q 025758          174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (248)
Q Consensus       174 ~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~  236 (248)
                      +++++|||..+.|++|+.+++.+++..++     .++++.+..++..++|++|.+++.++...
T Consensus       152 ~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~  209 (334)
T 1a5t_A          152 LATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDN  209 (334)
T ss_dssp             CHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHH
T ss_pred             cHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccch
Confidence            99999999999999999999999998654     67899999999999999999999887654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.96  E-value=1.1e-28  Score=218.80  Aligned_cols=209  Identities=24%  Similarity=0.351  Sum_probs=154.1

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcC-----------------CCCeeEEECCCCCCHHHHHHHHHHHHcCCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ-----------------DCPHLLFYGPPGSGKKTLIMALLRQVFGPGA   63 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~-----------------~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~   63 (248)
                      .+|+|||+|++|++++|++.+++.|..|+..+                 ..++++|+||+|+|||++|+++|+.+..   
T Consensus        27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~---  103 (516)
T 1sxj_A           27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY---  103 (516)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred             CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC---
Confidence            48999999999999999999999999988641                 2345999999999999999999997621   


Q ss_pred             ccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCC---------cCCCCCCeeEE
Q 025758           64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI---------DTKGKRGFKVL  134 (248)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~vi  134 (248)
                      ..                             +.+.+......  ....+.+.........         .......+.|+
T Consensus       104 ~~-----------------------------i~in~s~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl  152 (516)
T 1sxj_A          104 DI-----------------------------LEQNASDVRSK--TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI  152 (516)
T ss_dssp             EE-----------------------------EEECTTSCCCH--HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEE
T ss_pred             CE-----------------------------EEEeCCCcchH--HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEE
Confidence            11                             11111111100  0011111100000000         00113567899


Q ss_pred             EEeCCCCCCHHH---HHHHHHHHHHhcCCeeEEEEecCCC-cccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758          135 VLNEVDKLSREA---QHSLRRTMEKYSASCRLILCCNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (248)
Q Consensus       135 iiDE~d~l~~~~---~~~ll~~le~~~~~~~~Il~t~~~~-~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~  210 (248)
                      +|||+|.+....   .+.|++++++.  ...+|+++++.. ..++++++||..+.|++|+.+++.+++..++.++++.++
T Consensus       153 iIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~  230 (516)
T 1sxj_A          153 IMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD  230 (516)
T ss_dssp             EECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             EEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence            999999987543   37788888763  456888888765 556789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHhhhcccccCC
Q 025758          211 SGFATRLAEKSNRSLRRAILSFETCRVQQLRFTMP  245 (248)
Q Consensus       211 ~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~~~  245 (248)
                      ++++..|++.++||+|.+++.|+.++.....++.+
T Consensus       231 ~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~  265 (516)
T 1sxj_A          231 PNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHE  265 (516)
T ss_dssp             TTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTT
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchH
Confidence            99999999999999999999999988766555544

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.94  E-value=5.8e-26  Score=191.32  Aligned_cols=190  Identities=21%  Similarity=0.303  Sum_probs=147.3

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhc-----CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~-----~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      .|.+||+|.+|++++|++.+++.+..++..     +..++++|+||+|||||++|+.++..+..+   .+.+++      
T Consensus        18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~---~~~~~~------   88 (338)
T 3pfi_A           18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN---IKTTAA------   88 (338)
T ss_dssp             -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC---EEEEEG------
T ss_pred             hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEecc------
Confidence            699999999999999999999999888863     334569999999999999999999865221   111110      


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~  156 (248)
                                             ...  .........   +..        ...+.+++|||++.+.+..++.|++.+++
T Consensus        89 -----------------------~~~--~~~~~~~~~---~~~--------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~  132 (338)
T 3pfi_A           89 -----------------------PMI--EKSGDLAAI---LTN--------LSEGDILFIDEIHRLSPAIEEVLYPAMED  132 (338)
T ss_dssp             -----------------------GGC--CSHHHHHHH---HHT--------CCTTCEEEEETGGGCCHHHHHHHHHHHHT
T ss_pred             -----------------------hhc--cchhHHHHH---HHh--------ccCCCEEEEechhhcCHHHHHHHHHHHHh
Confidence                                   000  011111221   221        23567999999999999999999999987


Q ss_pred             hcC------------------CeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758          157 YSA------------------SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (248)
Q Consensus       157 ~~~------------------~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l  217 (248)
                      ...                  ...+|++||....+.+++++|+ ..+.|++|+.+++..++...+...++.+++++++.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l  212 (338)
T 3pfi_A          133 YRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEI  212 (338)
T ss_dssp             SCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred             ccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            531                  2468888999889999999999 899999999999999999999999999999999999


Q ss_pred             HHHccccHHHHHHHHHHHh
Q 025758          218 AEKSNRSLRRAILSFETCR  236 (248)
Q Consensus       218 ~~~~~g~~r~~~~~l~~~~  236 (248)
                      +..+.|++|.+.+.++.+.
T Consensus       213 ~~~~~G~~r~l~~~l~~~~  231 (338)
T 3pfi_A          213 AKRSRSTPRIALRLLKRVR  231 (338)
T ss_dssp             HHTTTTCHHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHH
Confidence            9999999999999998864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.94  E-value=4.4e-26  Score=194.08  Aligned_cols=233  Identities=19%  Similarity=0.210  Sum_probs=153.0

Q ss_pred             CccccCCCCC-cccccccHHHHHH---HHHHhhcCCCC--eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758            2 LWVDKYRPKT-LDQVIVHQDIAQN---LKKLVTEQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (248)
Q Consensus         2 ~~~~ky~p~~-~~~lig~~~~~~~---l~~~~~~~~~~--~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~   75 (248)
                      .+.++|+|.. |++++|++.+++.   +...+..+..+  +++|+||||+|||++|++++..+.+.. ..+.+.+..+. 
T Consensus        32 ~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~-~~~~~~~~~~~-  109 (368)
T 3uk6_A           32 GLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDT-PFTAIAGSEIF-  109 (368)
T ss_dssp             CBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSC-CEEEEEGGGGS-
T ss_pred             CcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccC-Ccccccchhhh-
Confidence            5678999999 9999999998776   45555666654  599999999999999999999875321 11222211100 


Q ss_pred             ccCCcccc-------------------------cceeee--cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCC
Q 025758           76 DAGSRNID-------------------------LELTTL--SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGK  128 (248)
Q Consensus        76 ~~~~~~~~-------------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (248)
                       +......                         ..+...  .......+.....+. ....+.+.+..........-...
T Consensus       110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~g~~~  187 (368)
T 3uk6_A          110 -SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGE-IKSEVREQINAKVAEWREEGKAE  187 (368)
T ss_dssp             -CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC--
T ss_pred             -hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccc-cHHHHHHHHHHHHHHhhhhcccc
Confidence             0000000                         000000  000000000000000 01123333333222110000001


Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEec------------CCCcccHHHhhhhheeeecCCCHHHHHH
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN------------SSSKVTEAIRSRCLNIRINSPTEEQIVK  196 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~------------~~~~~~~~l~sR~~~i~~~~~~~~~~~~  196 (248)
                      ..+.|+||||++.|++..++.|++.++++... .+++.++            .+..+.++++|||..+.|++|+.+++..
T Consensus       188 ~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~  266 (368)
T 3uk6_A          188 IIPGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQ  266 (368)
T ss_dssp             -CBCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred             ccCceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHH
Confidence            23579999999999999999999999987554 3444554            2457889999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHcc-ccHHHHHHHHHHHhhhc
Q 025758          197 VLEFIAKKEGLQLPSGFATRLAEKSN-RSLRRAILSFETCRVQQ  239 (248)
Q Consensus       197 il~~~~~~~~~~~~~~~~~~l~~~~~-g~~r~~~~~l~~~~~~~  239 (248)
                      ++..++..+++.+++++++.+++.+. ||+|.++++++.+...+
T Consensus       267 il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A  310 (368)
T 3uk6_A          267 ILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVC  310 (368)
T ss_dssp             HHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998 99999999999987654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.93  E-value=1.9e-24  Score=180.89  Aligned_cols=194  Identities=24%  Similarity=0.299  Sum_probs=149.9

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhc----C-CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~----~-~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      +|.+||+|.+|++++|++..++.+..++..    + ...+++|+||+|+|||++|+.++..+.++-              
T Consensus         1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~--------------   66 (324)
T 1hqc_A            1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL--------------   66 (324)
T ss_dssp             ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE--------------
T ss_pred             CCccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE--------------
Confidence            478999999999999999998888877752    2 334599999999999999999998762110              


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~  156 (248)
                                        +.+......  .   ..+....+..       ....+.+++|||++.++...++.|++.+++
T Consensus        67 ------------------~~~~~~~~~--~---~~~l~~~l~~-------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~  116 (324)
T 1hqc_A           67 ------------------RVTSGPAIE--K---PGDLAAILAN-------SLEEGDILFIDEIHRLSRQAEEHLYPAMED  116 (324)
T ss_dssp             ------------------EEECTTTCC--S---HHHHHHHHTT-------TCCTTCEEEETTTTSCCHHHHHHHHHHHHH
T ss_pred             ------------------EEEeccccC--C---hHHHHHHHHH-------hccCCCEEEEECCcccccchHHHHHHHHHh
Confidence                              111111111  0   1222222222       023567999999999999999999999997


Q ss_pred             hc------------------CCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758          157 YS------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (248)
Q Consensus       157 ~~------------------~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l  217 (248)
                      ..                  ....+|++||....+.+++.+|+ ..+.|++|+.+++..++...+...++.+++++++.+
T Consensus       117 ~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l  196 (324)
T 1hqc_A          117 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEI  196 (324)
T ss_dssp             SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred             hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            53                  23568889999999999999999 699999999999999999999988999999999999


Q ss_pred             HHHccccHHHHHHHHHHHhhhc
Q 025758          218 AEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       218 ~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      +..++|++|.+.++++.+...+
T Consensus       197 ~~~~~G~~r~l~~~l~~~~~~a  218 (324)
T 1hqc_A          197 GRRSRGTMRVAKRLFRRVRDFA  218 (324)
T ss_dssp             HHHSCSCHHHHHHHHHHHTTTS
T ss_pred             HHHccCCHHHHHHHHHHHHHHH
Confidence            9999999999999998876544

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.93  E-value=3.4e-24  Score=187.43  Aligned_cols=108  Identities=20%  Similarity=0.285  Sum_probs=98.5

Q ss_pred             eeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEe---------cC----CCcccHHHhhhhheeeecCCCHHHHHHH
Q 025758          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC---------NS----SSKVTEAIRSRCLNIRINSPTEEQIVKV  197 (248)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t---------~~----~~~~~~~l~sR~~~i~~~~~~~~~~~~i  197 (248)
                      ++|++|||+++|+.+++++|++++|+++.. .||+.+         ++    +..++++++|||..++|++|+.+++.++
T Consensus       296 ~~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~i  374 (456)
T 2c9o_A          296 PGVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQI  374 (456)
T ss_dssp             ECEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHH
T ss_pred             ceEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHH
Confidence            469999999999999999999999998877 677777         44    6689999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHc-cccHHHHHHHHHHHhhhc
Q 025758          198 LEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~  239 (248)
                      |..++..+++.++++++..++..+ .|++|.++++++.+...+
T Consensus       375 L~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A  417 (456)
T 2c9o_A          375 IKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLA  417 (456)
T ss_dssp             HHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 999999999999875444

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.93  E-value=2.6e-24  Score=181.05  Aligned_cols=190  Identities=20%  Similarity=0.291  Sum_probs=144.7

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhcC-----CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~-----~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~   77 (248)
                      |+++|+|++|++++|++.+++.+...+..+     ...+++|+||||+||||+++++|+.+.++-.   ...|       
T Consensus        15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~sg-------   84 (334)
T 1in4_A           15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTSG-------   84 (334)
T ss_dssp             --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEET-------
T ss_pred             HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEec-------
Confidence            599999999999999999999999888643     3356999999999999999999997633110   0000       


Q ss_pred             CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh
Q 025758           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (248)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~  157 (248)
                                              ........+...+   ..        .....|++|||++.+.+...+.++..++..
T Consensus        85 ------------------------~~~~~~~~l~~~~---~~--------~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~  129 (334)
T 1in4_A           85 ------------------------PVLVKQGDMAAIL---TS--------LERGDVLFIDEIHRLNKAVEELLYSAIEDF  129 (334)
T ss_dssp             ------------------------TTCCSHHHHHHHH---HH--------CCTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred             ------------------------hHhcCHHHHHHHH---HH--------ccCCCEEEEcchhhcCHHHHHHHHHHHHhc
Confidence                                    0000011111111   11        113469999999999988888888877653


Q ss_pred             c------------------CCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 025758          158 S------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (248)
Q Consensus       158 ~------------------~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~  218 (248)
                      .                  ....++..++.+..+.++++||| ..+.|++++.+++.+++.+.+...++.++++++.+|+
T Consensus       130 ~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia  209 (334)
T 1in4_A          130 QIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIA  209 (334)
T ss_dssp             CCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred             ccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence            2                  11345667888889999999999 4789999999999999999998889999999999999


Q ss_pred             HHccccHHHHHHHHHHHhh
Q 025758          219 EKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       219 ~~~~g~~r~~~~~l~~~~~  237 (248)
                      +.+.|++|.++++|+.+..
T Consensus       210 ~~~~G~~R~a~~ll~~~~~  228 (334)
T 1in4_A          210 KRSRGTPRIAIRLTKRVRD  228 (334)
T ss_dssp             HTSTTCHHHHHHHHHHHHH
T ss_pred             HhcCCChHHHHHHHHHHHH
Confidence            9999999999999987654

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.92  E-value=2e-24  Score=179.00  Aligned_cols=174  Identities=13%  Similarity=0.178  Sum_probs=134.8

Q ss_pred             ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc-CCCcccceecccceeeccCCcccccceeeeccccee
Q 025758           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      ||+++.+.|.+.++.++.++++|+||+|+|||++|++++..+. |..                           ..++..
T Consensus         1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~---------------------------~~~d~~   53 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP---------------------------KASDVL   53 (305)
T ss_dssp             ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC---------------------------CTTTEE
T ss_pred             ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc---------------------------cCCCEE
Confidence            7889999999999998855699999999999999999998531 100                           112234


Q ss_pred             eeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccH
Q 025758           96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE  175 (248)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~  175 (248)
                      .+.+++. ......+++.++.+. ..|.    .++++|+||||+|.|+..++++|++++|+|+.++.||++|+++..+++
T Consensus        54 ~l~~~~~-~~~id~ir~li~~~~-~~p~----~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~  127 (305)
T 2gno_A           54 EIDPEGE-NIGIDDIRTIKDFLN-YSPE----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP  127 (305)
T ss_dssp             EECCSSS-CBCHHHHHHHHHHHT-SCCS----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred             EEcCCcC-CCCHHHHHHHHHHHh-hccc----cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChH
Confidence            5554421 122334566665554 3332    347899999999999999999999999999999999999999999999


Q ss_pred             HHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758          176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (248)
Q Consensus       176 ~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~  234 (248)
                      +++||  ++.|++++.+++.+++..++   +  ++++.+    ..+.||+|.++++++.
T Consensus       128 tI~SR--~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~  175 (305)
T 2gno_A          128 TIKSR--VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKL  175 (305)
T ss_dssp             HHHTT--SEEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHH
T ss_pred             HHHce--eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHH
Confidence            99999  99999999999999999877   3  455554    4578999999988863

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.92  E-value=1e-23  Score=168.71  Aligned_cols=194  Identities=16%  Similarity=0.239  Sum_probs=148.2

Q ss_pred             CccccCCC-CCcccccc---cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeecc
Q 025758            2 LWVDKYRP-KTLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (248)
Q Consensus         2 ~~~~ky~p-~~~~~lig---~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~   77 (248)
                      +|..+|+| .+|+++++   ++.+.+.+..++..+...+++|+||+|+||||+|+.++..+.........++...+    
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~----   91 (242)
T 3bos_A           16 SLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH----   91 (242)
T ss_dssp             EEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG----
T ss_pred             CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH----
Confidence            68899999 89999997   46788899988877666679999999999999999999977543211111111000    


Q ss_pred             CCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH--HHHHHHHHH
Q 025758           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA--QHSLRRTME  155 (248)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~--~~~ll~~le  155 (248)
                                       ..      ..      .+.+.           ....+.+++|||++.+....  +..|+++++
T Consensus        92 -----------------~~------~~------~~~~~-----------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~  131 (242)
T 3bos_A           92 -----------------AS------IS------TALLE-----------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYN  131 (242)
T ss_dssp             -----------------GG------SC------GGGGT-----------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHH
T ss_pred             -----------------HH------HH------HHHHH-----------hccCCCEEEEeccccccCCHHHHHHHHHHHH
Confidence                             00      00      00000           11356799999999887554  888999988


Q ss_pred             HhcCCe--eEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHH
Q 025758          156 KYSASC--RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR  226 (248)
Q Consensus       156 ~~~~~~--~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r  226 (248)
                      ......  .+|++++...    ...+++.+|+   ..+.|++|+.+++.+++...+...++.+++++++.+++.++||+|
T Consensus       132 ~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r  211 (242)
T 3bos_A          132 RVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLR  211 (242)
T ss_dssp             HHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHH
T ss_pred             HHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHH
Confidence            764333  4788877554    3568999999   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 025758          227 RAILSFETCRVQQ  239 (248)
Q Consensus       227 ~~~~~l~~~~~~~  239 (248)
                      .+.+.++.+...+
T Consensus       212 ~l~~~l~~~~~~a  224 (242)
T 3bos_A          212 TLFDVLDRLDKAS  224 (242)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.90  E-value=1.2e-22  Score=174.29  Aligned_cols=198  Identities=18%  Similarity=0.240  Sum_probs=141.6

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhc------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~   69 (248)
                      .|+++|+|.+|++++|++.+++.|..++..            ....++||+||+|||||++|+++|..+..   ..+.++
T Consensus       104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~---~~~~v~  180 (389)
T 3vfd_A          104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA---TFFNIS  180 (389)
T ss_dssp             TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEC
T ss_pred             hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC---cEEEee
Confidence            499999999999999999999999988721            12345999999999999999999986521   111111


Q ss_pred             ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC-------
Q 025758           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-------  142 (248)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-------  142 (248)
                      +..+                     ..   ...+. ........+.....         ..+.||+|||+|.|       
T Consensus       181 ~~~l---------------------~~---~~~g~-~~~~~~~~~~~a~~---------~~~~il~iDEid~l~~~~~~~  226 (389)
T 3vfd_A          181 AASL---------------------TS---KYVGE-GEKLVRALFAVARE---------LQPSIIFIDQVDSLLCERREG  226 (389)
T ss_dssp             SCCC--------------------------------CHHHHHHHHHHHHH---------SSSEEEEEETGGGGC------
T ss_pred             HHHh---------------------hc---cccch-HHHHHHHHHHHHHh---------cCCeEEEEECchhhcccCCCc
Confidence            1000                     00   00010 11123333443332         24579999999887       


Q ss_pred             ----CHHHHHHHHHHHHHhc----CCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758          143 ----SREAQHSLRRTMEKYS----ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF  213 (248)
Q Consensus       143 ----~~~~~~~ll~~le~~~----~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~  213 (248)
                          ....++.|+..++...    ....+|.+||.+..+.+++++|| ..+.|+.|+.+++..++..++...+..++++.
T Consensus       227 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~  306 (389)
T 3vfd_A          227 EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKE  306 (389)
T ss_dssp             --CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHH
T ss_pred             cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHH
Confidence                2345667888887553    33568888999999999999999 48999999999999999999999999999999


Q ss_pred             HHHHHHHccccHHHHH-HHHHHHh
Q 025758          214 ATRLAEKSNRSLRRAI-LSFETCR  236 (248)
Q Consensus       214 ~~~l~~~~~g~~r~~~-~~l~~~~  236 (248)
                      +..++..+.|..+..+ .+++.+.
T Consensus       307 ~~~la~~~~g~~~~~l~~L~~~a~  330 (389)
T 3vfd_A          307 LAQLARMTDGYSGSDLTALAKDAA  330 (389)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            9999999988655444 4444433

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.90  E-value=1.8e-22  Score=166.96  Aligned_cols=198  Identities=18%  Similarity=0.228  Sum_probs=142.7

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhc------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~   69 (248)
                      .|+++|.|.+|++++|++.+++.+..++..            ....+++|+||||||||++|+++++.+.++   .+.++
T Consensus        10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~---~~~i~   86 (297)
T 3b9p_A           10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT---FLNIS   86 (297)
T ss_dssp             TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE---EEEEE
T ss_pred             HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEee
Confidence            489999999999999999999999987732            123459999999999999999999965211   11111


Q ss_pred             ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------
Q 025758           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------  143 (248)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------  143 (248)
                      +       ...              .   ....+ .........+.....         ..+.+++|||+|.+.      
T Consensus        87 ~-------~~l--------------~---~~~~~-~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~  132 (297)
T 3b9p_A           87 A-------ASL--------------T---SKYVG-DGEKLVRALFAVARH---------MQPSIIFIDEVDSLLSERSSS  132 (297)
T ss_dssp             S-------TTT--------------S---SSSCS-CHHHHHHHHHHHHHH---------TCSEEEEEETGGGTSBCC---
T ss_pred             H-------HHH--------------h---hcccc-hHHHHHHHHHHHHHH---------cCCcEEEeccHHHhccccccC
Confidence            1       000              0   00001 111223333333322         256799999998773      


Q ss_pred             -----HHHHHHHHHHHHHhcC-----CeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 025758          144 -----REAQHSLRRTMEKYSA-----SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (248)
Q Consensus       144 -----~~~~~~ll~~le~~~~-----~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~  212 (248)
                           ....+.|+..++....     ...+|.+||.+..+.+++.+|| ..+.++.|+.++...++...+.+.+..++++
T Consensus       133 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~  212 (297)
T 3b9p_A          133 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTE  212 (297)
T ss_dssp             --CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHH
T ss_pred             cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHH
Confidence                 3456778888887643     3568888999999999999999 6899999999999999999998888889999


Q ss_pred             HHHHHHHHccccHH-HHHHHHHHHh
Q 025758          213 FATRLAEKSNRSLR-RAILSFETCR  236 (248)
Q Consensus       213 ~~~~l~~~~~g~~r-~~~~~l~~~~  236 (248)
                      .+..++..+.|..+ .+.++++.+.
T Consensus       213 ~~~~la~~~~g~~~~~l~~l~~~a~  237 (297)
T 3b9p_A          213 ALRRLAKITDGYSGSDLTALAKDAA  237 (297)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            99999999988655 4445555544

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.90  E-value=8.7e-23  Score=170.91  Aligned_cols=198  Identities=18%  Similarity=0.203  Sum_probs=143.7

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhh----------cC-CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----------EQ-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~----------~~-~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~   69 (248)
                      .|+++|.+.+|++++|++.+++.|..++.          .+ .. .+++|+||||||||++|+++|..+..+   .+.++
T Consensus         7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~v~   83 (322)
T 3eie_A            7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS   83 (322)
T ss_dssp             CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred             ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC---EEEEc
Confidence            47899999999999999999999998772          22 22 349999999999999999999976211   11111


Q ss_pred             ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (248)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----  144 (248)
                      +..                        +.....+ .....+...+.....         ..+.||+|||+|.+..     
T Consensus        84 ~~~------------------------l~~~~~g-~~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~~~~~  129 (322)
T 3eie_A           84 SSD------------------------LVSKWMG-ESEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEG  129 (322)
T ss_dssp             HHH------------------------HHTTTGG-GHHHHHHHHHHHHHH---------TSSEEEEEECGGGGSCC----
T ss_pred             hHH------------------------Hhhcccc-hHHHHHHHHHHHHHh---------cCCeEEEechhhhhhccCCCC
Confidence            100                        0000001 111223344443332         2567999999998743     


Q ss_pred             ------HHHHHHHHHHHHh---cCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758          145 ------EAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (248)
Q Consensus       145 ------~~~~~ll~~le~~---~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~  214 (248)
                            ...+.++..++..   ..+..+|.+||.+..+.+++++|+ ..+.++.|+.++...++...+.+.+..++++.+
T Consensus       130 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l  209 (322)
T 3eie_A          130 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDY  209 (322)
T ss_dssp             --CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHH
T ss_pred             cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHH
Confidence                  3467788888754   334677888999999999999999 689999999999999999999888888899999


Q ss_pred             HHHHHHccc-cHHHHHHHHHHHh
Q 025758          215 TRLAEKSNR-SLRRAILSFETCR  236 (248)
Q Consensus       215 ~~l~~~~~g-~~r~~~~~l~~~~  236 (248)
                      ..|+..+.| +.+++.++++.+.
T Consensus       210 ~~la~~t~g~sg~di~~l~~~a~  232 (322)
T 3eie_A          210 RTLGAMTEGYSGSDIAVVVKDAL  232 (322)
T ss_dssp             HHHHHTTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999876 5666666665554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.90  E-value=8.4e-23  Score=169.82  Aligned_cols=192  Identities=19%  Similarity=0.270  Sum_probs=138.2

Q ss_pred             cccccHHHHHHHHHHhh---------------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC
Q 025758           14 QVIVHQDIAQNLKKLVT---------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~---------------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~   78 (248)
                      +++|++.+++.+..++.               .....+++|+||||||||++|+++|..+.......   .+ ++.    
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~---~~-~~~----  103 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR---KG-HLV----  103 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS---SC-CEE----
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC---CC-cEE----
Confidence            68999999998887653               22334599999999999999999999774322100   00 000    


Q ss_pred             CcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC---------CHHHHHH
Q 025758           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHS  149 (248)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~~~~~  149 (248)
                               .+....   +.....+. ........+...            .+.+++|||+|.+         +...++.
T Consensus       104 ---------~~~~~~---l~~~~~g~-~~~~~~~~~~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~  158 (309)
T 3syl_A          104 ---------SVTRDD---LVGQYIGH-TAPKTKEVLKRA------------MGGVLFIDEAYYLYRPDNERDYGQEAIEI  158 (309)
T ss_dssp             ---------EECGGG---TCCSSTTC-HHHHHHHHHHHH------------TTSEEEEETGGGSCCCC---CCTHHHHHH
T ss_pred             ---------EEcHHH---hhhhcccc-cHHHHHHHHHhc------------CCCEEEEEChhhhccCCCcccccHHHHHH
Confidence                     000000   00001111 111122223221            2359999999977         7888999


Q ss_pred             HHHHHHHhcCCeeEEEEecCCC-----cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--
Q 025758          150 LRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS--  221 (248)
Q Consensus       150 ll~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~--  221 (248)
                      |++.+++...+..+|++++...     .+.+++++|+ ..+.|++|+.+++..++...+.+.++.++++++..+++.+  
T Consensus       159 Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~  238 (309)
T 3syl_A          159 LLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGL  238 (309)
T ss_dssp             HHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            9999998877788888887653     2458999999 8999999999999999999999999999999999999864  


Q ss_pred             ------cccHHHHHHHHHHHhhh
Q 025758          222 ------NRSLRRAILSFETCRVQ  238 (248)
Q Consensus       222 ------~g~~r~~~~~l~~~~~~  238 (248)
                            .||+|.+.+.++.+...
T Consensus       239 ~~~~~~~gn~r~l~~~l~~a~~~  261 (309)
T 3syl_A          239 RRNQPHFANARSIRNALDRARLR  261 (309)
T ss_dssp             HTTSSSCCHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCcHHHHHHHHHHHHHH
Confidence                  49999999999988853

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.89  E-value=1.1e-21  Score=167.67  Aligned_cols=219  Identities=16%  Similarity=0.164  Sum_probs=150.2

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhc----CCCC--eeEEECCCCCCHHHHHHHHHHHHcCC-Ccccceeccccee
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCP--HLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWK   74 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~----~~~~--~ill~Gp~G~GKTtla~~ia~~l~~~-~~~~~~~~~~~~~   74 (248)
                      +|..+|+|   ++++|++...+.+..++..    +...  +++|+||+|+||||+++.+++.+... ....+.+++.   
T Consensus         9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~---   82 (389)
T 1fnn_A            9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF---   82 (389)
T ss_dssp             GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT---
T ss_pred             hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc---
Confidence            47789999   7899999988888777754    3333  79999999999999999999977544 2222222221   


Q ss_pred             eccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHH
Q 025758           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM  154 (248)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~l  154 (248)
                          ........ .......++......+.............+..        .+.+.+++|||++.++....+.|++++
T Consensus        83 ----~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlilDE~~~l~~~~~~~L~~~~  149 (389)
T 1fnn_A           83 ----IYRNFTAI-IGEIARSLNIPFPRRGLSRDEFLALLVEHLRE--------RDLYMFLVLDDAFNLAPDILSTFIRLG  149 (389)
T ss_dssp             ----TCCSHHHH-HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--------TTCCEEEEEETGGGSCHHHHHHHHHHT
T ss_pred             ----cCCCHHHH-HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh--------cCCeEEEEEECccccchHHHHHHHHHH
Confidence                10000000 00000001111111111111212222222222        235789999999999999999999999


Q ss_pred             HHhc----CCeeEEEEecCC---CcccHHHhhhhh--eeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc--
Q 025758          155 EKYS----ASCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS--  221 (248)
Q Consensus       155 e~~~----~~~~~Il~t~~~---~~~~~~l~sR~~--~i~~~~~~~~~~~~il~~~~~~~--~~~~~~~~~~~l~~~~--  221 (248)
                      +...    .+..+|++++++   ..+.+.+.+|+.  .+.|++++.+++..++..++...  ...+++++++.+++.+  
T Consensus       150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  229 (389)
T 1fnn_A          150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA  229 (389)
T ss_dssp             TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred             HhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Confidence            7654    367889999988   567888999985  79999999999999999988762  3368899999999999  


Q ss_pred             -------cccHHHHHHHHHHHhhhc
Q 025758          222 -------NRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       222 -------~g~~r~~~~~l~~~~~~~  239 (248)
                             .|++|.++++++.+...+
T Consensus       230 ~~~~~~~~G~~r~~~~~l~~a~~~a  254 (389)
T 1fnn_A          230 QTPLDTNRGDARLAIDILYRSAYAA  254 (389)
T ss_dssp             SSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCcHHHHHHHHHHHHHHH
Confidence                   899999999999877543

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.89  E-value=9.9e-22  Score=166.49  Aligned_cols=199  Identities=18%  Similarity=0.194  Sum_probs=138.0

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhh----------c-CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~----------~-~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~   69 (248)
                      .|+.++.+.+|++++|++.+++.|..++.          . ...+ +++|+||||||||++|+++|..+..+   .+.++
T Consensus        40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~v~  116 (355)
T 2qp9_X           40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS  116 (355)
T ss_dssp             -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred             hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC---EEEee
Confidence            36778999999999999999999998762          1 1223 49999999999999999999976221   11111


Q ss_pred             ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (248)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----  144 (248)
                      +..+                     ..   ...+. ........+.....         ..+.||+|||+|.+.+     
T Consensus       117 ~~~l---------------------~~---~~~g~-~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~r~~~  162 (355)
T 2qp9_X          117 SSDL---------------------VS---KWMGE-SEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEG  162 (355)
T ss_dssp             HHHH---------------------HS---CC----CHHHHHHHHHHHHH---------TSSEEEEEECGGGGTC-----
T ss_pred             HHHH---------------------hh---hhcch-HHHHHHHHHHHHHH---------cCCeEEEEechHhhcccCCCC
Confidence            1000                     00   00011 11223333433322         2567999999998863     


Q ss_pred             ------HHHHHHHHHHHHh---cCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758          145 ------EAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (248)
Q Consensus       145 ------~~~~~ll~~le~~---~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~  214 (248)
                            ...+.|+..++..   .....+|.+||.+..+.+++++|| ..+.++.|+.+++..++..++.+.+..+++..+
T Consensus       163 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l  242 (355)
T 2qp9_X          163 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDY  242 (355)
T ss_dssp             -CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHH
Confidence                  2467788888754   345678888999999999999999 789999999999999999999888777889999


Q ss_pred             HHHHHHccc-cHHHHHHHHHHHhh
Q 025758          215 TRLAEKSNR-SLRRAILSFETCRV  237 (248)
Q Consensus       215 ~~l~~~~~g-~~r~~~~~l~~~~~  237 (248)
                      +.|+..+.| +.+++.++++.+..
T Consensus       243 ~~la~~t~G~sg~dl~~l~~~A~~  266 (355)
T 2qp9_X          243 RTLGAMTEGYSGSDIAVVVKDALM  266 (355)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999987 66666666666553

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.88  E-value=1e-21  Score=166.66  Aligned_cols=197  Identities=16%  Similarity=0.213  Sum_probs=139.6

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhc------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      ++++|.|.+|++++|++.+++.|..++..            ....+++|+||+|||||++|+++|..+.+   ..+.+++
T Consensus        74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~---~~~~i~~  150 (357)
T 3d8b_A           74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA---TFFSISA  150 (357)
T ss_dssp             TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC---EEEEEEG
T ss_pred             cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC---eEEEEeh
Confidence            67899999999999999999999887742            22345999999999999999999986521   1111111


Q ss_pred             cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-------
Q 025758           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------  143 (248)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------  143 (248)
                      ..                        +.....+ .........+....         ...+.+|+|||+|.|.       
T Consensus       151 ~~------------------------l~~~~~g-~~~~~~~~~~~~a~---------~~~~~vl~iDEid~l~~~~~~~~  196 (357)
T 3d8b_A          151 SS------------------------LTSKWVG-EGEKMVRALFAVAR---------CQQPAVIFIDEIDSLLSQRGDGE  196 (357)
T ss_dssp             GG------------------------GCCSSTT-HHHHHHHHHHHHHH---------HTCSEEEEEETHHHHTBC-----
T ss_pred             HH------------------------hhccccc-hHHHHHHHHHHHHH---------hcCCeEEEEeCchhhhccCCCCc
Confidence            00                        0000001 01112233333222         1256799999998762       


Q ss_pred             ----HHHHHHHHHHHHHh----cCCeeEEEEecCCCcccHHHhhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758          144 ----REAQHSLRRTMEKY----SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (248)
Q Consensus       144 ----~~~~~~ll~~le~~----~~~~~~Il~t~~~~~~~~~l~sR~~-~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~  214 (248)
                          ....+.++..++..    .....+|.+||.+..+.+++++||. .+.++.|+.++...++...+...++.++++.+
T Consensus       197 ~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l  276 (357)
T 3d8b_A          197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI  276 (357)
T ss_dssp             -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHH
T ss_pred             chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHH
Confidence                23456677777643    2346788889998899999999995 88999999999999999999888888999999


Q ss_pred             HHHHHHccc-cHHHHHHHHHHHh
Q 025758          215 TRLAEKSNR-SLRRAILSFETCR  236 (248)
Q Consensus       215 ~~l~~~~~g-~~r~~~~~l~~~~  236 (248)
                      ..+++.+.| +.+.+..+++.+.
T Consensus       277 ~~la~~t~G~s~~dl~~l~~~a~  299 (357)
T 3d8b_A          277 EQIVQQSDAFSGADMTQLCREAS  299 (357)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999887 5555555555543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.88  E-value=9.6e-22  Score=167.83  Aligned_cols=218  Identities=20%  Similarity=0.253  Sum_probs=146.2

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhc----CCCCeeEEECCCCCCHHHHHHHHHHHHcCC------Ccccceecccc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP------GAEKVKVENKT   72 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~----~~~~~ill~Gp~G~GKTtla~~ia~~l~~~------~~~~~~~~~~~   72 (248)
                      |..+|.|   ++++|++...+.+..++..    +...+++|+||+|+||||+++.++..+...      ....+.+++  
T Consensus        12 l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~--   86 (387)
T 2v1u_A           12 LLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA--   86 (387)
T ss_dssp             HSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET--
T ss_pred             cCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC--
Confidence            5567888   8899999999999988753    344459999999999999999999876332      111111211  


Q ss_pred             eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH--HHHHH
Q 025758           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHSL  150 (248)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--~~~~l  150 (248)
                           ........+ .......++......+.............+..        .+.+.+++|||++.+...  .+..+
T Consensus        87 -----~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlilDEi~~l~~~~~~~~~l  152 (387)
T 2v1u_A           87 -----RHRETPYRV-ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSR--------LRGIYIIVLDEIDFLPKRPGGQDLL  152 (387)
T ss_dssp             -----TTSCSHHHH-HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTT--------SCSEEEEEEETTTHHHHSTTHHHHH
T ss_pred             -----CcCCCHHHH-HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc--------cCCeEEEEEccHhhhcccCCCChHH
Confidence                 111000000 00000001111111111111112222222221        235789999999988766  67788


Q ss_pred             HHHHHHh-----cCCeeEEEEecCC---CcccHHHhhhh--heeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHH
Q 025758          151 RRTMEKY-----SASCRLILCCNSS---SKVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLA  218 (248)
Q Consensus       151 l~~le~~-----~~~~~~Il~t~~~---~~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~--~~~~~~~~~~~~l~  218 (248)
                      ..+++..     .....+|+++|..   ..+.+.+.+|+  ..+.|++++.+++..++...+..  .+..+++++++.++
T Consensus       153 ~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~  232 (387)
T 2v1u_A          153 YRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCA  232 (387)
T ss_dssp             HHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHH
T ss_pred             HhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence            8888755     3345788888887   57889999999  68999999999999999999876  46678899999999


Q ss_pred             HHcc---ccHHHHHHHHHHHhhhc
Q 025758          219 EKSN---RSLRRAILSFETCRVQQ  239 (248)
Q Consensus       219 ~~~~---g~~r~~~~~l~~~~~~~  239 (248)
                      +.+.   |++|.++++++.+...+
T Consensus       233 ~~~~~~~G~~r~~~~~l~~a~~~a  256 (387)
T 2v1u_A          233 ALAAREHGDARRALDLLRVAGEIA  256 (387)
T ss_dssp             HHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHH
Confidence            9998   99999999999887543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.2e-20  Score=157.81  Aligned_cols=198  Identities=17%  Similarity=0.195  Sum_probs=140.6

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhh----------c-CCC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~----------~-~~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      .+.++.+.+|+|++|++.+++.|...+.          . ... .+++|+||||||||++|+++|..+.+.  ..+.+++
T Consensus         2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~~   79 (322)
T 1xwi_A            2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISS   79 (322)
T ss_dssp             CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEEC
T ss_pred             eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEEh
Confidence            3457788999999999999999988763          1 122 349999999999999999999865111  1111111


Q ss_pred             cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-------
Q 025758           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------  143 (248)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------  143 (248)
                      .                     .   +.....+. ....+...+.....         ..+.||+|||+|.+.       
T Consensus        80 ~---------------------~---l~~~~~g~-~~~~~~~lf~~a~~---------~~~~vl~iDEid~l~~~~~~~~  125 (322)
T 1xwi_A           80 S---------------------D---LVSKWLGE-SEKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENE  125 (322)
T ss_dssp             C---------------------S---SCCSSCCS-CHHHHHHHHHHHHH---------TSSEEEEEETTTGGGCCSSSCC
T ss_pred             H---------------------H---HHhhhhhH-HHHHHHHHHHHHHh---------cCCcEEEeecHHHhcccccccc
Confidence            0                     0   00001111 12234444443332         256799999999872       


Q ss_pred             ----HHHHHHHHHHHHHh---cCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758          144 ----REAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (248)
Q Consensus       144 ----~~~~~~ll~~le~~---~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~  215 (248)
                          ....+.|+..++..   ..+..+|.+||.+..+.+++++|+ ..+.++.|+.++...++...+.+.+..+++..+.
T Consensus       126 ~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~  205 (322)
T 1xwi_A          126 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFR  205 (322)
T ss_dssp             TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHH
T ss_pred             chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence                23456677777754   344678888999999999999999 6899999999999999999998888778899999


Q ss_pred             HHHHHccc-cHHHHHHHHHHHh
Q 025758          216 RLAEKSNR-SLRRAILSFETCR  236 (248)
Q Consensus       216 ~l~~~~~g-~~r~~~~~l~~~~  236 (248)
                      .|++.+.| +.+++.++++.+.
T Consensus       206 ~la~~t~G~sgadl~~l~~~A~  227 (322)
T 1xwi_A          206 ELGRKTDGYSGADISIIVRDAL  227 (322)
T ss_dssp             HHHHTCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHH
Confidence            99999876 4666666666554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.87  E-value=2.9e-21  Score=156.56  Aligned_cols=201  Identities=17%  Similarity=0.245  Sum_probs=137.4

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhh---c--------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT---E--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~---~--------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~   69 (248)
                      +|.++|.+.+|++++|++.+++.+...+.   .        ...+ +++|+|||||||||+|+++++.+..+   .+.++
T Consensus         1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~i~   77 (257)
T 1lv7_A            1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTIS   77 (257)
T ss_dssp             CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEEC
T ss_pred             CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC---EEEEe
Confidence            69999999999999999999887776542   1        1223 49999999999999999999976321   12222


Q ss_pred             ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (248)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----  144 (248)
                      +..+.                        ....+. ........+....         ...+.+++|||+|.+..     
T Consensus        78 ~~~~~------------------------~~~~~~-~~~~~~~~~~~a~---------~~~~~il~iDeid~l~~~~~~~  123 (257)
T 1lv7_A           78 GSDFV------------------------EMFVGV-GASRVRDMFEQAK---------KAAPCIIFIDEIDAVGRQRGAG  123 (257)
T ss_dssp             SCSST------------------------TSCCCC-CHHHHHHHHHHHH---------TTCSEEEEETTHHHHTCCCSTT
T ss_pred             HHHHH------------------------HHhhhh-hHHHHHHHHHHHH---------HcCCeeehhhhhhhhccCCCCC
Confidence            21110                        000011 1122334444332         12467999999976532     


Q ss_pred             ---------HHHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758          145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (248)
Q Consensus       145 ---------~~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~  210 (248)
                               ...+.+++.++..  .....+|.+||.+..+.+++.+  |+ ..+.++.|+.++..+++...+.+.++. +
T Consensus       124 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~  202 (257)
T 1lv7_A          124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-P  202 (257)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-T
T ss_pred             cCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-c
Confidence                     2345666666654  2345788889999889899887  76 578999999999999998877654433 2


Q ss_pred             HHHHHHHHHHccc-cHHHHHHHHHHHhhhcc
Q 025758          211 SGFATRLAEKSNR-SLRRAILSFETCRVQQL  240 (248)
Q Consensus       211 ~~~~~~l~~~~~g-~~r~~~~~l~~~~~~~~  240 (248)
                      +..+..++..+.| +.|++.++++.+...+.
T Consensus       203 ~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~  233 (257)
T 1lv7_A          203 DIDAAIIARGTPGFSGADLANLVNEAALFAA  233 (257)
T ss_dssp             TCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            2337788888999 99999999888776544

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.87  E-value=1.8e-21  Score=169.29  Aligned_cols=195  Identities=16%  Similarity=0.272  Sum_probs=137.3

Q ss_pred             Cccccc-c--cHHHHHHHHHHhhcCC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce
Q 025758           11 TLDQVI-V--HQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (248)
Q Consensus        11 ~~~~li-g--~~~~~~~l~~~~~~~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (248)
                      +|++++ |  +..+...+..+..... .++++|+||+|+||||+|+++++.+.....+.      .+             
T Consensus       103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~------~v-------------  163 (440)
T 2z4s_A          103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL------RV-------------  163 (440)
T ss_dssp             SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSS------CE-------------
T ss_pred             ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC------eE-------------
Confidence            889988 5  5556666676665533 45599999999999999999999763321110      00             


Q ss_pred             eeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCC-C-CCCeeEEEEeCCCCCCH--HHHHHHHHHHHHhcC-Ce
Q 025758           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTK-G-KRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSA-SC  161 (248)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~viiiDE~d~l~~--~~~~~ll~~le~~~~-~~  161 (248)
                              +.+.....       ..+....+.......+. . ...+.+++|||++.+..  ..+..|+++++.... +.
T Consensus       164 --------~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~  228 (440)
T 2z4s_A          164 --------MYITSEKF-------LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGK  228 (440)
T ss_dssp             --------EEEEHHHH-------HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTC
T ss_pred             --------EEeeHHHH-------HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCC
Confidence                    01110000       01111111100000000 0 11567999999998875  788899999987644 35


Q ss_pred             eEEEEecCCCc----ccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758          162 RLILCCNSSSK----VTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (248)
Q Consensus       162 ~~Il~t~~~~~----~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~  234 (248)
                      .+|++|+++..    +.++++||+   .++.+++|+.+++..++.+.+...++.++++++++|+..++||+|.+.+.|+.
T Consensus       229 ~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~  308 (440)
T 2z4s_A          229 QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIK  308 (440)
T ss_dssp             EEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            67777776543    789999999   68999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhhc
Q 025758          235 CRVQQ  239 (248)
Q Consensus       235 ~~~~~  239 (248)
                      +...+
T Consensus       309 ~~~~a  313 (440)
T 2z4s_A          309 LLVYK  313 (440)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.87  E-value=7.4e-22  Score=164.18  Aligned_cols=202  Identities=16%  Similarity=0.262  Sum_probs=139.1

Q ss_pred             ccccccHHHHHHHHHHhhcC--------CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758           13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~~--------~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      ++++|+..+++.+...+..+        +.. +++|+||||||||++|+++++.+.+.....+.+++..+..    ..  
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~----~~--   90 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME----KH--   90 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS----TT--
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc----cc--
Confidence            45789999999888877643        223 4999999999999999999997755443333333221110    00  


Q ss_pred             cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----  158 (248)
                            .....++..+...+........+.   +..         ..+.+++|||++.+++..++.|++++++..     
T Consensus        91 ------~~~~l~g~~~~~~~~~~~~~~~~~---~~~---------~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~  152 (311)
T 4fcw_A           91 ------AVSRLIGAPPGYVGYEEGGQLTEA---VRR---------RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSH  152 (311)
T ss_dssp             ------HHHHHHCCCTTSTTTTTCCHHHHH---HHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTT
T ss_pred             ------cHHHhcCCCCccccccccchHHHH---HHh---------CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCC
Confidence                  000011111111111111111111   111         134699999999999999999999999764     


Q ss_pred             ------CCeeEEEEecC--------------------------CCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHc
Q 025758          159 ------ASCRLILCCNS--------------------------SSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE  205 (248)
Q Consensus       159 ------~~~~~Il~t~~--------------------------~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~  205 (248)
                            .++.+|++||.                          ...+.+++.+|+ ..+.|.+|+.+++..++...+.+.
T Consensus       153 ~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~  232 (311)
T 4fcw_A          153 GRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL  232 (311)
T ss_dssp             SCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred             CCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence                  24558888888                          335778899999 789999999999999998876652


Q ss_pred             ---------CCCCCHHHHHHHHHHc---cccHHHHHHHHHHHhhh
Q 025758          206 ---------GLQLPSGFATRLAEKS---NRSLRRAILSFETCRVQ  238 (248)
Q Consensus       206 ---------~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~~  238 (248)
                               .+.+++++++.+++..   .||+|.+.+.++.++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~  277 (311)
T 4fcw_A          233 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET  277 (311)
T ss_dssp             HHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHH
T ss_pred             HHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHH
Confidence                     3468899999999865   49999999999887753

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.87  E-value=9.7e-21  Score=164.85  Aligned_cols=198  Identities=17%  Similarity=0.189  Sum_probs=140.9

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhh----------c-CC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~----------~-~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      ++.++.+.+|++++|++.+++.|..++.          . .. ..+++|+||||||||++|+++|..+.+  ...+.+++
T Consensus       124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~--~~~~~v~~  201 (444)
T 2zan_A          124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--STFFSISS  201 (444)
T ss_dssp             CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS--SEEEEECC
T ss_pred             eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC--CCEEEEeH
Confidence            5678999999999999999999998762          1 12 234999999999999999999986511  11111111


Q ss_pred             cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-------
Q 025758           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------  143 (248)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------  143 (248)
                      ..                     ....   ..+.. ...+...+.....         ..+.||+|||+|.+.       
T Consensus       202 ~~---------------------l~~~---~~g~~-~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~~~~~~  247 (444)
T 2zan_A          202 SD---------------------LVSK---WLGES-EKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENE  247 (444)
T ss_dssp             C---------------------------------C-CCTHHHHHHHHHH---------SCSEEEEESCTTTTCCCSSCCC
T ss_pred             HH---------------------HHhh---hcchH-HHHHHHHHHHHHH---------cCCeEEEEechHhhccCCCCcc
Confidence            00                     0000   00000 0113444443332         256799999999873       


Q ss_pred             ----HHHHHHHHHHHHHh---cCCeeEEEEecCCCcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758          144 ----REAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (248)
Q Consensus       144 ----~~~~~~ll~~le~~---~~~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~  215 (248)
                          ....+.|+..++..   ..+..||.+||.+..+.+++++|| ..+.++.|+.+++..++..++.+.+..+++..+.
T Consensus       248 ~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~  327 (444)
T 2zan_A          248 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQ  327 (444)
T ss_dssp             CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence                24566677777653   345678889999999999999999 6899999999999999999988877778899999


Q ss_pred             HHHHHccc-cHHHHHHHHHHHh
Q 025758          216 RLAEKSNR-SLRRAILSFETCR  236 (248)
Q Consensus       216 ~l~~~~~g-~~r~~~~~l~~~~  236 (248)
                      .|+..+.| +.+++.++++.+.
T Consensus       328 ~la~~t~G~sgadl~~l~~~a~  349 (444)
T 2zan_A          328 ELGRKTDGYSGADISIIVRDAL  349 (444)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHH
Confidence            99999987 5666666666655

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.86  E-value=7.5e-21  Score=159.21  Aligned_cols=191  Identities=18%  Similarity=0.247  Sum_probs=134.5

Q ss_pred             CCccccc-c--cHHHHHHHHHHhhcCC--CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           10 KTLDQVI-V--HQDIAQNLKKLVTEQD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        10 ~~~~~li-g--~~~~~~~l~~~~~~~~--~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      .+|++++ |  +..+...+..++..+.  ..+++|+||+|+||||+|+++++.+.......+.+++              
T Consensus         8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~--------------   73 (324)
T 1l8q_A            8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA--------------   73 (324)
T ss_dssp             CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH--------------
T ss_pred             CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH--------------
Confidence            5788887 4  5667777777776543  3459999999999999999999977432111111111              


Q ss_pred             ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCC-CCCCeeEEEEeCCCCCCH--HHHHHHHHHHHHhc-CC
Q 025758           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTK-GKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYS-AS  160 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~viiiDE~d~l~~--~~~~~ll~~le~~~-~~  160 (248)
                                     ...       ..+....+.......+. ....+.+++|||++.+..  ..+..++.+++... .+
T Consensus        74 ---------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~  131 (324)
T 1l8q_A           74 ---------------DDF-------AQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE  131 (324)
T ss_dssp             ---------------HHH-------HHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT
T ss_pred             ---------------HHH-------HHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC
Confidence                           000       00001000000000000 001356999999998875  67888999988653 34


Q ss_pred             eeEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          161 CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       161 ~~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      ..+|++++++.    .+.+++.+|+   ..+.|++ +.+++..++...+...++.++++++++|++.+ ||+|.+.+.|+
T Consensus       132 ~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~  209 (324)
T 1l8q_A          132 KQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIK  209 (324)
T ss_dssp             CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHH
T ss_pred             CeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHH
Confidence            56777776553    5789999999   6899999 99999999999999999999999999999999 99999999998


Q ss_pred             HHhhh
Q 025758          234 TCRVQ  238 (248)
Q Consensus       234 ~~~~~  238 (248)
                      .++..
T Consensus       210 ~~~~~  214 (324)
T 1l8q_A          210 LIKLK  214 (324)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            87754

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.6e-20  Score=155.91  Aligned_cols=197  Identities=21%  Similarity=0.288  Sum_probs=132.8

Q ss_pred             cccCCCCCcccccccHHHHHHHHHHhh-----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758            4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      +++-...+|+|+.|.+++++.|+..+.           -| +.| ++||+||||||||.+|+++|+++..+-   +.+.+
T Consensus       139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~~  215 (405)
T 4b4t_J          139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVSG  215 (405)
T ss_dssp             EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEEG
T ss_pred             ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEEh
Confidence            344456899999999999999988763           12 233 499999999999999999999873211   11111


Q ss_pred             cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH------
Q 025758           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------  144 (248)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------  144 (248)
                      .                        .+.....| .....+++.+.....         ..|.||+|||+|.+.+      
T Consensus       216 s------------------------~l~sk~vG-ese~~vr~lF~~Ar~---------~aP~IIFiDEiDai~~~R~~~~  261 (405)
T 4b4t_J          216 A------------------------ELVQKYIG-EGSRMVRELFVMARE---------HAPSIIFMDEIDSIGSTRVEGS  261 (405)
T ss_dssp             G------------------------GGSCSSTT-HHHHHHHHHHHHHHH---------TCSEEEEEESSSCCTTSCSCSS
T ss_pred             H------------------------Hhhccccc-hHHHHHHHHHHHHHH---------hCCceEeeecchhhccCCCCCC
Confidence            0                        00011111 122235555554443         2567999999998742      


Q ss_pred             -----H---HHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          145 -----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       145 -----~---~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                           .   ..+.|+..++..  ..++.+|.+||++..+.+++++  |+ ..|.|+.|+.++..+|++.++.+.++. ++
T Consensus       262 ~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~d  340 (405)
T 4b4t_J          262 GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RG  340 (405)
T ss_dssp             SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SS
T ss_pred             CCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-cc
Confidence                 1   234555556544  3346789999999999999987  77 689999999999999998877655443 12


Q ss_pred             HHHHHHHHHccc-cHHHHHHHHHHHhhh
Q 025758          212 GFATRLAEKSNR-SLRRAILSFETCRVQ  238 (248)
Q Consensus       212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~~  238 (248)
                      -.++.|++.+.| +.+++-++++.+...
T Consensus       341 vdl~~lA~~t~G~SGADi~~l~~eA~~~  368 (405)
T 4b4t_J          341 INLRKVAEKMNGCSGADVKGVCTEAGMY  368 (405)
T ss_dssp             CCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            237888888765 566666666665543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1e-20  Score=156.71  Aligned_cols=200  Identities=10%  Similarity=0.072  Sum_probs=128.9

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-------cccceecccceeeccCCcccccceeeecccce
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKTWKIDAGSRNIDLELTTLSSANH   94 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (248)
                      ...|...+..++.++++|+||||||||++++.+++.+....       ...+.++|....  .+     ... .......
T Consensus        33 ~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~--t~-----~~~-~~~I~~~  104 (318)
T 3te6_A           33 FLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA--GM-----DAL-YEKIWFA  104 (318)
T ss_dssp             HHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC---------HHH-HHHHHHH
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC--CH-----HHH-HHHHHHH
Confidence            33555566677778899999999999999999999885321       122333332111  00     000 0000000


Q ss_pred             eeeCCCCc-CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh---cCCeeEEEEecCC
Q 025758           95 VELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---SASCRLILCCNSS  170 (248)
Q Consensus        95 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~---~~~~~~Il~t~~~  170 (248)
                      +  ..... .......+...+.....       ....+.|++|||+|.+.  .++.|+.+++-+   .....+|+++|+.
T Consensus       105 L--~g~~~~~~~~~~~L~~~f~~~~~-------~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~  173 (318)
T 3te6_A          105 I--SKENLCGDISLEALNFYITNVPK-------AKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHN  173 (318)
T ss_dssp             H--SCCC--CCCCHHHHHHHHHHSCG-------GGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred             h--cCCCCCchHHHHHHHHHHHHhhh-------ccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCc
Confidence            0  00000 00111223333332210       13367899999999998  667777777643   2235688888887


Q ss_pred             C----cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHHc--C---------------------------------CCC
Q 025758          171 S----KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--G---------------------------------LQL  209 (248)
Q Consensus       171 ~----~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~~--~---------------------------------~~~  209 (248)
                      +    .+.+.++||+  ..|.|++|+.+++.+|++.++...  +                                 ..+
T Consensus       174 d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  253 (318)
T 3te6_A          174 VTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKI  253 (318)
T ss_dssp             CCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEEC
T ss_pred             ccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence            5    2556778998  579999999999999999998873  1                                 136


Q ss_pred             CHHHHHHHHH---HccccHHHHHHHHHHHhhhcc
Q 025758          210 PSGFATRLAE---KSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       210 ~~~~~~~l~~---~~~g~~r~~~~~l~~~~~~~~  240 (248)
                      ++++++++++   ...||+|.|+++|+.+...+.
T Consensus       254 ~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae  287 (318)
T 3te6_A          254 NNKITQLIAKNVANVSGSTEKAFKICEAAVEISK  287 (318)
T ss_dssp             CHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Confidence            8999999998   578999999999998886553

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.86  E-value=3e-21  Score=160.27  Aligned_cols=193  Identities=17%  Similarity=0.292  Sum_probs=129.1

Q ss_pred             cccccHHHHHHHHHHhhc--------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758           14 QVIVHQDIAQNLKKLVTE--------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~~--------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      +++|++.+++.+...+..              ....+++|+||||||||++|++++..+.++   .+.+++..+.     
T Consensus        16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~---~~~i~~~~~~-----   87 (310)
T 1ofh_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFT-----   87 (310)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGGS-----
T ss_pred             hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEcchhcc-----
Confidence            479999999988877643              234459999999999999999999976221   1112111110     


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH------------H
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA------------Q  147 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~------------~  147 (248)
                                 .   .++.    +........+.+.    ..+..+.....+.|++|||+|.+.+..            +
T Consensus        88 -----------~---~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~  145 (310)
T 1ofh_A           88 -----------E---VGYV----GKEVDSIIRDLTD----SAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQ  145 (310)
T ss_dssp             -----------S---CCSG----GGSTTHHHHHHHH----TTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHH
T ss_pred             -----------c---CCcc----CccHHHHHHHHHH----HhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHH
Confidence                       0   0010    1111111222222    111000001246799999999887544            7


Q ss_pred             HHHHHHHHHhc----------CCeeEEEEe----cCCCcccHHHhhhh-heeeecCCCHHHHHHHHHH-----------H
Q 025758          148 HSLRRTMEKYS----------ASCRLILCC----NSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEF-----------I  201 (248)
Q Consensus       148 ~~ll~~le~~~----------~~~~~Il~t----~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~-----------~  201 (248)
                      +.|++++++..          ....+|+++    +.+..+.+++.+|| ..+.|++|+.+++..++..           .
T Consensus       146 ~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~  225 (310)
T 1ofh_A          146 RDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKAL  225 (310)
T ss_dssp             HHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHH
T ss_pred             HHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHH
Confidence            88999998641          245566664    35567899999999 5799999999999999983           2


Q ss_pred             HHHcC--CCCCHHHHHHHHHHc--------cccHHHHHHHHHHHh
Q 025758          202 AKKEG--LQLPSGFATRLAEKS--------NRSLRRAILSFETCR  236 (248)
Q Consensus       202 ~~~~~--~~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~  236 (248)
                      +...+  +.++++++++|++.+        .||+|.+.+.++.+.
T Consensus       226 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~  270 (310)
T 1ofh_A          226 MATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM  270 (310)
T ss_dssp             HHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred             HHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence            33344  368999999999988        699999999999876

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.85  E-value=5.6e-20  Score=149.09  Aligned_cols=195  Identities=20%  Similarity=0.246  Sum_probs=125.9

Q ss_pred             CCCcccccccHHHHHHHHHHhh---c---------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVT---E---------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~---~---------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      +.+|++++|++.+++.+..++.   .         ....+++|+||||||||++|++++..+..+   .+.+++..    
T Consensus         2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~~~~----   74 (262)
T 2qz4_A            2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMAGAE----   74 (262)
T ss_dssp             CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEETTT----
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEechHH----
Confidence            4789999999999998877653   1         223349999999999999999999976321   11111100    


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------------H
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------R  144 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------------~  144 (248)
                                       ...    .............+.....         ..+.+++|||+|.+.            .
T Consensus        75 -----------------~~~----~~~~~~~~~~~~~~~~a~~---------~~~~vl~iDeid~l~~~~~~~~~~~~~~  124 (262)
T 2qz4_A           75 -----------------FVE----VIGGLGAARVRSLFKEARA---------RAPCIVYIDEIDAVGKKRSTTMSGFSNT  124 (262)
T ss_dssp             -----------------TSS----SSTTHHHHHHHHHHHHHHH---------TCSEEEEEECC-----------------
T ss_pred             -----------------HHh----hccChhHHHHHHHHHHHHh---------cCCeEEEEeCcchhhccccccccCccch
Confidence                             000    0011111223333443332         246799999999883            2


Q ss_pred             HHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HH
Q 025758          145 EAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-AT  215 (248)
Q Consensus       145 ~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~-~~  215 (248)
                      ..+..+..+++..     .....+|.++|.+..+.+++.+  |+ ..+.|++|+.++..+++...+.+.++..+.+. ..
T Consensus       125 ~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~  204 (262)
T 2qz4_A          125 EEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQ  204 (262)
T ss_dssp             --CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHH
T ss_pred             hHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHH
Confidence            3334444554432     2346788888888888899988  88 68999999999999999999998888777664 47


Q ss_pred             HHHHHccc-cHHHHHHHHHHHhhhcc
Q 025758          216 RLAEKSNR-SLRRAILSFETCRVQQL  240 (248)
Q Consensus       216 ~l~~~~~g-~~r~~~~~l~~~~~~~~  240 (248)
                      .++..+.| +.+.+.++++.+...+.
T Consensus       205 ~l~~~~~g~~~~~l~~l~~~a~~~a~  230 (262)
T 2qz4_A          205 RLAELTPGFSGADIANICNEAALHAA  230 (262)
T ss_dssp             HHHHTCTTCCHHHHHHHHHHHHTC--
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            78877765 35677777776665443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.85  E-value=9.5e-21  Score=155.69  Aligned_cols=198  Identities=19%  Similarity=0.289  Sum_probs=133.1

Q ss_pred             cccCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      ++...+.+|++++|++.+++.+..++..             ....+++|+||||||||++|+++|..+..+   .+.+.+
T Consensus         8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~---~~~v~~   84 (285)
T 3h4m_A            8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT---FIRVVG   84 (285)
T ss_dssp             EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE---EEEEEG
T ss_pred             ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEeh
Confidence            3556778999999999999999887743             233459999999999999999999865211   111111


Q ss_pred             cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC--------
Q 025758           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--------  142 (248)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l--------  142 (248)
                      .                        .+.....+ .........+.....         ..+.|++|||+|.+        
T Consensus        85 ~------------------------~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~~  130 (285)
T 3h4m_A           85 S------------------------ELVKKFIG-EGASLVKDIFKLAKE---------KAPSIIFIDEIDAIAAKRTDAL  130 (285)
T ss_dssp             G------------------------GGCCCSTT-HHHHHHHHHHHHHHH---------TCSEEEEEETTHHHHBCCSSSC
T ss_pred             H------------------------HHHHhccc-hHHHHHHHHHHHHHH---------cCCeEEEEECHHHhcccCcccc
Confidence            0                        00000111 111123333333332         24679999999876        


Q ss_pred             ---CHHHHHHHHHHHHHh-----cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          143 ---SREAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       143 ---~~~~~~~ll~~le~~-----~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                         +...+..+..+++..     ..+..+|++||.+..+.+++.+  |+ ..+.|++|+.++..+++...+...++.. +
T Consensus       131 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~  209 (285)
T 3h4m_A          131 TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE-D  209 (285)
T ss_dssp             CGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT-T
T ss_pred             CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC-c
Confidence               456677777777653     2346788889998899999998  77 5899999999999999998877655442 3


Q ss_pred             HHHHHHHHHccc-cHHHHHHHHHHHhhhc
Q 025758          212 GFATRLAEKSNR-SLRRAILSFETCRVQQ  239 (248)
Q Consensus       212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~~~  239 (248)
                      ..+..++..+.| +.|.+.++++.+...+
T Consensus       210 ~~~~~l~~~~~g~~~~~i~~l~~~a~~~a  238 (285)
T 3h4m_A          210 VNLEEIAKMTEGCVGAELKAICTEAGMNA  238 (285)
T ss_dssp             CCHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            346777777765 5666666665555433

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=6.8e-20  Score=155.92  Aligned_cols=197  Identities=18%  Similarity=0.250  Sum_probs=131.6

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhh-----------cC-CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~   69 (248)
                      -+++-...+|+|+.|.+++++.|...+.           -| +. .++||+||||||||.+|+++|+++..+   -+.++
T Consensus       172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~---fi~v~  248 (437)
T 4b4t_I          172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT---FLRIV  248 (437)
T ss_dssp             EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE---EEEEE
T ss_pred             eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC---EEEEE
Confidence            3556667899999999999999987663           12 22 349999999999999999999987321   11111


Q ss_pred             ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (248)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----  144 (248)
                      +.                        .+.....+ .....++..+.....         ..|.||+|||+|.+..     
T Consensus       249 ~s------------------------~l~sk~vG-esek~ir~lF~~Ar~---------~aP~IIfiDEiDai~~~R~~~  294 (437)
T 4b4t_I          249 GS------------------------ELIQKYLG-DGPRLCRQIFKVAGE---------NAPSIVFIDEIDAIGTKRYDS  294 (437)
T ss_dssp             SG------------------------GGCCSSSS-HHHHHHHHHHHHHHH---------TCSEEEEEEEESSSSCCCSCS
T ss_pred             HH------------------------HhhhccCc-hHHHHHHHHHHHHHh---------cCCcEEEEehhhhhcccCCCC
Confidence            10                        00011111 112234555554443         2567999999997731     


Q ss_pred             ------HHH---HHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758          145 ------EAQ---HSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (248)
Q Consensus       145 ------~~~---~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~  210 (248)
                            ...   +.|+..++..  ..++.+|.+||+++.+.+++++  |+ ..|.|+.|+.++..+|+..++.+..+.  
T Consensus       295 ~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~--  372 (437)
T 4b4t_I          295 NSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS--  372 (437)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC--
T ss_pred             CCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC--
Confidence                  223   3445555543  2346789999999999999987  77 689999999999999998877654443  


Q ss_pred             HH-HHHHHHHHccc-cHHHHHHHHHHHhhh
Q 025758          211 SG-FATRLAEKSNR-SLRRAILSFETCRVQ  238 (248)
Q Consensus       211 ~~-~~~~l~~~~~g-~~r~~~~~l~~~~~~  238 (248)
                      ++ .++.|+..+.| +.+++-++++.+...
T Consensus       373 ~dvdl~~LA~~T~GfSGADI~~l~~eA~~~  402 (437)
T 4b4t_I          373 EDVNLETLVTTKDDLSGADIQAMCTEAGLL  402 (437)
T ss_dssp             SCCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            32 37888888765 566666666665543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.85  E-value=1.3e-20  Score=160.96  Aligned_cols=217  Identities=14%  Similarity=0.114  Sum_probs=140.7

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhh----cCCCCeeEEECCCCCCHHHHHHHHHHHHcCC--------Ccccceec
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGP--------GAEKVKVE   69 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~----~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~--------~~~~~~~~   69 (248)
                      .|..+|+|   ++++|++..++.+..++.    .+...+++|+||+|+|||++|+.++..+...        ....+.++
T Consensus        12 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           12 FIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             TTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            47788888   889999998887776654    3334469999999999999999999976332        11111111


Q ss_pred             ccceeeccCCcc-cccceeeeccccee-eeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH-
Q 025758           70 NKTWKIDAGSRN-IDLELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-  146 (248)
Q Consensus        70 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-  146 (248)
                      +..       .. ..... .......+ +......+............ ...        ...+ +++|||++.+.... 
T Consensus        89 ~~~-------~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~-~l~--------~~~~-vlilDEi~~l~~~~~  150 (384)
T 2qby_B           89 CRE-------VGGTPQAV-LSSLAGKLTGFSVPKHGINLGEYIDKIKN-GTR--------NIRA-IIYLDEVDTLVKRRG  150 (384)
T ss_dssp             HHH-------HCSCHHHH-HHHHHHHHHCSCCCSSSSCTHHHHHHHHH-HHS--------SSCE-EEEEETTHHHHHSTT
T ss_pred             Ccc-------CCCCHHHH-HHHHHHHhcCCCCCCCCCCHHHHHHHHHH-Hhc--------cCCC-EEEEECHHHhccCCC
Confidence            100       00 00000 00000000 11111111111111222222 111        1133 99999998876542 


Q ss_pred             HHH-HHHHHHHhcCCeeEEEEecCC---CcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH
Q 025758          147 QHS-LRRTMEKYSASCRLILCCNSS---SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAE  219 (248)
Q Consensus       147 ~~~-ll~~le~~~~~~~~Il~t~~~---~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~--~~~~~~~~~~~~l~~  219 (248)
                      ++. +..+++.. .+..+|++++..   ..+.+.+.+|+ ..+.|++++.+++..++..++..  .+..+++++++.+++
T Consensus       151 ~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~  229 (384)
T 2qby_B          151 GDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAA  229 (384)
T ss_dssp             SHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHH
T ss_pred             CceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHH
Confidence            455 55555544 567899999887   57889999995 79999999999999999998875  456788999999999


Q ss_pred             Hcc---ccHHHHHHHHHHHhhhcc
Q 025758          220 KSN---RSLRRAILSFETCRVQQL  240 (248)
Q Consensus       220 ~~~---g~~r~~~~~l~~~~~~~~  240 (248)
                      .+.   ||+|.++++++.+...+.
T Consensus       230 ~~~~~~G~~r~a~~~l~~a~~~a~  253 (384)
T 2qby_B          230 ISAKEHGDARKAVNLLFRAAQLAS  253 (384)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHhccCCHHHHHHHHHHHHHHhc
Confidence            998   999999999998876543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.2e-19  Score=152.42  Aligned_cols=196  Identities=17%  Similarity=0.258  Sum_probs=129.2

Q ss_pred             cccCCCCCcccccccHHHHHHHHHHhh-----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758            4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      ++.-...+|+|+.|.+++++.|+..+.           -| +.+ ++||+||||||||++|+++|+++..+   -+.+.+
T Consensus       200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~---fi~vs~  276 (467)
T 4b4t_H          200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT---FIRVIG  276 (467)
T ss_dssp             EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE---EEEEEG
T ss_pred             ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC---eEEEEh
Confidence            444455899999999999999988653           12 233 49999999999999999999987321   111111


Q ss_pred             cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH------
Q 025758           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------  144 (248)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------  144 (248)
                      .                        .+.....| .....+++.+.....         ..|.||+|||+|.+..      
T Consensus       277 s------------------------~L~sk~vG-esek~ir~lF~~Ar~---------~aP~IIfiDEiDai~~~R~~~~  322 (467)
T 4b4t_H          277 S------------------------ELVQKYVG-EGARMVRELFEMART---------KKACIIFFDEIDAVGGARFDDG  322 (467)
T ss_dssp             G------------------------GGCCCSSS-HHHHHHHHHHHHHHH---------TCSEEEEEECCTTTSBCCSSSS
T ss_pred             H------------------------HhhcccCC-HHHHHHHHHHHHHHh---------cCCceEeecccccccccccCcC
Confidence            0                        00111111 112234555554443         2567999999997731      


Q ss_pred             -----HHH---HHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          145 -----EAQ---HSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       145 -----~~~---~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                           ...   +.++..++..  ..++.+|.+||++..+.++++.  |+ ..|.|+.|+.+++.+|++.++.+..+.- +
T Consensus       323 ~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-d  401 (467)
T 4b4t_H          323 AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-G  401 (467)
T ss_dssp             CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-S
T ss_pred             CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-C
Confidence                 223   3344444433  2345788899999999999987  88 6899999999999999988776544331 1


Q ss_pred             HHHHHHHHHccc-cHHHHHHHHHHHhh
Q 025758          212 GFATRLAEKSNR-SLRRAILSFETCRV  237 (248)
Q Consensus       212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~  237 (248)
                      -.++.|++.+.| +.+++-++++.+..
T Consensus       402 vdl~~LA~~T~GfSGADI~~l~~eAa~  428 (467)
T 4b4t_H          402 IRWELISRLCPNSTGAELRSVCTEAGM  428 (467)
T ss_dssp             CCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            237788888765 45666666655543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2.5e-19  Score=153.98  Aligned_cols=196  Identities=19%  Similarity=0.262  Sum_probs=129.6

Q ss_pred             cccCCCCCcccccccHHHHHHHHHHhh-----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758            4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      +++=.+.+|+|+.|.+++++.|...+.           -| +.| ++||+||||||||++|+++|+++..+   -+.+.+
T Consensus       172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~---f~~v~~  248 (434)
T 4b4t_M          172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT---FLKLAA  248 (434)
T ss_dssp             EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEG
T ss_pred             cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC---EEEEeh
Confidence            344467899999999999999987652           12 233 49999999999999999999987321   111111


Q ss_pred             cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-------
Q 025758           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------  143 (248)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------  143 (248)
                      .                        .+.....| .....++..+.....         ..|.||+|||+|.+.       
T Consensus       249 s------------------------~l~~~~vG-ese~~ir~lF~~A~~---------~aP~IifiDEiDal~~~R~~~~  294 (434)
T 4b4t_M          249 P------------------------QLVQMYIG-EGAKLVRDAFALAKE---------KAPTIIFIDELDAIGTKRFDSE  294 (434)
T ss_dssp             G------------------------GGCSSCSS-HHHHHHHHHHHHHHH---------HCSEEEEEECTHHHHCCCSSGG
T ss_pred             h------------------------hhhhcccc-hHHHHHHHHHHHHHh---------cCCeEEeecchhhhhhccCCCC
Confidence            0                        00111111 112234555554443         256799999998651       


Q ss_pred             ----HHH---HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          144 ----REA---QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       144 ----~~~---~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                          ...   .+.|+..++....  ++.+|.+||++..+.+++.+  |+ ..|.|+.|+.++..++++..+.+..+.- +
T Consensus       295 ~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-d  373 (434)
T 4b4t_M          295 KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD-D  373 (434)
T ss_dssp             GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCS-C
T ss_pred             CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCC-c
Confidence                122   2345555554432  35688899999999999977  77 6899999999999999998887654431 1


Q ss_pred             HHHHHHHHHccc-cHHHHHHHHHHHhh
Q 025758          212 GFATRLAEKSNR-SLRRAILSFETCRV  237 (248)
Q Consensus       212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~  237 (248)
                      -.++.|++.+.| +.+++-++++.+..
T Consensus       374 vdl~~lA~~t~G~sGADi~~l~~eA~~  400 (434)
T 4b4t_M          374 INWQELARSTDEFNGAQLKAVTVEAGM  400 (434)
T ss_dssp             CCHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            227888888765 56666666665543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.83  E-value=5.8e-20  Score=156.63  Aligned_cols=218  Identities=15%  Similarity=0.215  Sum_probs=140.4

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhc----CCCCeeEEECCCCCCHHHHHHHHHHHHcCC---Ccccceecccceee
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP---GAEKVKVENKTWKI   75 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~----~~~~~ill~Gp~G~GKTtla~~ia~~l~~~---~~~~~~~~~~~~~~   75 (248)
                      |..+|.|   ++++|++...+.+..++..    +....++|+||+|+||||+++.+++.+...   ....+.+++.... 
T Consensus        13 l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-   88 (386)
T 2qby_A           13 LLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-   88 (386)
T ss_dssp             GSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-
T ss_pred             CCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-
Confidence            5567887   7889999999999888763    334459999999999999999999976432   1122222221100 


Q ss_pred             ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC----HHHHHHHH
Q 025758           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLR  151 (248)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----~~~~~~ll  151 (248)
                            ..... .......++......+.............+..        .+.+.+++|||++.+.    ......++
T Consensus        89 ------~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlilDE~~~l~~~~~~~~l~~l~  153 (386)
T 2qby_A           89 ------TPYRV-LADLLESLDVKVPFTGLSIAELYRRLVKAVRD--------YGSQVVIVLDEIDAFVKKYNDDILYKLS  153 (386)
T ss_dssp             ------SHHHH-HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT--------CCSCEEEEEETHHHHHHSSCSTHHHHHH
T ss_pred             ------CHHHH-HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc--------cCCeEEEEEcChhhhhccCcCHHHHHHh
Confidence                  00000 00000111111111111111112222222222        2247899999998764    34455555


Q ss_pred             HHHHHh-cCCeeEEEEecCCC---cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcc-
Q 025758          152 RTMEKY-SASCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKSN-  222 (248)
Q Consensus       152 ~~le~~-~~~~~~Il~t~~~~---~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~~--~~~~~~~~~~~l~~~~~-  222 (248)
                      +.++.. ..+..+|+++++..   .+.+.+.+|+  ..+.|++++.+++..++...+...  ...+++++++.+++.+. 
T Consensus       154 ~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (386)
T 2qby_A          154 RINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR  233 (386)
T ss_dssp             HHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred             hchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence            655532 33467888888773   5778899999  689999999999999999988653  35788999999999988 


Q ss_pred             --ccHHHHHHHHHHHhhhc
Q 025758          223 --RSLRRAILSFETCRVQQ  239 (248)
Q Consensus       223 --g~~r~~~~~l~~~~~~~  239 (248)
                        |++|.++++++.+...+
T Consensus       234 ~~G~~r~~~~ll~~a~~~a  252 (386)
T 2qby_A          234 EHGDARRALDLLRVSGEIA  252 (386)
T ss_dssp             TTCCHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHH
Confidence              99999999998877543

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.83  E-value=2.9e-20  Score=156.99  Aligned_cols=232  Identities=15%  Similarity=0.116  Sum_probs=134.1

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC---cccceecccceeeccCCcc
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG---AEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~---~~~~~~~~~~~~~~~~~~~   81 (248)
                      ..-+|.+|++++|++.+++.+......+...+++|+||+|||||++|++++..+....   ...+  ++.... .+..+.
T Consensus        16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~--~~~~~~-~~~~~~   92 (350)
T 1g8p_A           16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV--SSPNVE-MIPDWA   92 (350)
T ss_dssp             --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT--CCSSGG-GSCTTC
T ss_pred             CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccc--cccccc-cccchh
Confidence            3446789999999999888766555444445699999999999999999998653200   0000  000000 000000


Q ss_pred             cccceeeec-ccceeeeCCCCc--CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758           82 IDLELTTLS-SANHVELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus        82 ~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~  158 (248)
                      .++...... ....+.......  ...........+..-.............+.+++|||++.+++..++.|++.+++..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~  172 (350)
T 1g8p_A           93 TVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGE  172 (350)
T ss_dssp             CCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred             hhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCc
Confidence            000000000 001111111000  00000000111111000000000001236799999999999999999999999731


Q ss_pred             -------------CCeeEEEEecCCC-cccHHHhhhhh-eeeecCCC-HHHHHHHHHHH---------------------
Q 025758          159 -------------ASCRLILCCNSSS-KVTEAIRSRCL-NIRINSPT-EEQIVKVLEFI---------------------  201 (248)
Q Consensus       159 -------------~~~~~Il~t~~~~-~~~~~l~sR~~-~i~~~~~~-~~~~~~il~~~---------------------  201 (248)
                                   ....+|.++|... .+.+++.+||. .+.+++|+ .++..+++..+                     
T Consensus       173 ~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~  252 (350)
T 1g8p_A          173 NVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDI  252 (350)
T ss_dssp             EEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             eEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHH
Confidence                         2345666677544 78999999995 49999994 55555666542                     


Q ss_pred             --------HHHcCCCCCHHHHHHHHHHccc----cHHHHHHHHHHHhhhc
Q 025758          202 --------AKKEGLQLPSGFATRLAEKSNR----SLRRAILSFETCRVQQ  239 (248)
Q Consensus       202 --------~~~~~~~~~~~~~~~l~~~~~g----~~r~~~~~l~~~~~~~  239 (248)
                              ....++.++++++++|++.+.+    ++|.++++++.+...+
T Consensus       253 ~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A  302 (350)
T 1g8p_A          253 RNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALA  302 (350)
T ss_dssp             HHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence                    1224668999999999999877    8999999998776544

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.83  E-value=3e-20  Score=162.76  Aligned_cols=198  Identities=16%  Similarity=0.259  Sum_probs=137.9

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      .|+++|+|.++++++|++..++.+...+..+..++++|+||||||||++|+.+|..+.+...... +.+..+        
T Consensus       169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~-l~~~~~--------  239 (468)
T 3pxg_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI-LRDKRV--------  239 (468)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT-TSSCCE--------
T ss_pred             HHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh-hcCCeE--------
Confidence            58999999999999999999999999998777778999999999999999999998754321100 000000        


Q ss_pred             cccceeeecccceeeeCCC--CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758           82 IDLELTTLSSANHVELSPS--DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~  159 (248)
                                   +.+...  ..+.. .......+..+..         ..+.|++||    ...++++.|+..+++  .
T Consensus       240 -------------~~l~~~~~~~g~~-e~~~~~~~~~~~~---------~~~~iLfiD----~~~~a~~~L~~~L~~--g  290 (468)
T 3pxg_A          240 -------------MTLDMGTKYRGEF-EDRLKKVMDEIRQ---------AGNIILFID----AAIDASNILKPSLAR--G  290 (468)
T ss_dssp             -------------ECC-----------CTTHHHHHHHHHT---------CCCCEEEEC----C--------CCCTTS--S
T ss_pred             -------------EEeeCCccccchH-HHHHHHHHHHHHh---------cCCeEEEEe----CchhHHHHHHHhhcC--C
Confidence                         111111  00000 0113344544443         245699999    344567777777763  3


Q ss_pred             CeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcccc------
Q 025758          160 SCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS------  224 (248)
Q Consensus       160 ~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~g~------  224 (248)
                      ...+|.+||...     .+.+++.+||..+.|++|+.+++..++...+.+    .++.++++++..++..+.+.      
T Consensus       291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~l  370 (468)
T 3pxg_A          291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFL  370 (468)
T ss_dssp             SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred             CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcC
Confidence            567888888776     588999999999999999999999999988766    67889999999999876543      


Q ss_pred             HHHHHHHHHHHhh
Q 025758          225 LRRAILSFETCRV  237 (248)
Q Consensus       225 ~r~~~~~l~~~~~  237 (248)
                      ++.++++++.++.
T Consensus       371 p~~ai~ll~~a~~  383 (468)
T 3pxg_A          371 PDKAIDLIDEAGS  383 (468)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHH
Confidence            5578888877764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=8.3e-19  Score=150.83  Aligned_cols=193  Identities=16%  Similarity=0.208  Sum_probs=128.6

Q ss_pred             CCCCCcccccccHHHHHHHHHHhh-----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758            7 YRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus         7 y~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      -...+|+|+.|.+.+++.|...+.           -| +.| ++||+||||||||++|+++|+++..+-   +.+.+.  
T Consensus       175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~~s--  249 (437)
T 4b4t_L          175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSPAS--  249 (437)
T ss_dssp             SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGG--
T ss_pred             CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEehh--
Confidence            346789999999999999887763           12 233 499999999999999999999873211   111110  


Q ss_pred             eeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH---------
Q 025758           74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------  144 (248)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---------  144 (248)
                                         .   +.....+ .....++..+.....         ..|.||||||+|.+..         
T Consensus       250 -------------------~---l~sk~~G-ese~~ir~~F~~A~~---------~~P~IifiDEiDai~~~R~~~~~~~  297 (437)
T 4b4t_L          250 -------------------G---IVDKYIG-ESARIIREMFAYAKE---------HEPCIIFMDEVDAIGGRRFSEGTSA  297 (437)
T ss_dssp             -------------------G---TCCSSSS-HHHHHHHHHHHHHHH---------SCSEEEEEECCCSSSCCCSSSCCSS
T ss_pred             -------------------h---hccccch-HHHHHHHHHHHHHHh---------cCCceeeeecccccccccccCCCCc
Confidence                               0   0000111 112234444444332         3578999999997731         


Q ss_pred             --H---HHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhhh--h-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 025758          145 --E---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (248)
Q Consensus       145 --~---~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~sR--~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~  214 (248)
                        .   ..+.|+..++...  .++.+|.+||++..+.++++++  + ..|.|+.|+.++...|++.++.+..+. ++-.+
T Consensus       298 ~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl  376 (437)
T 4b4t_L          298 DREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDF  376 (437)
T ss_dssp             TTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCH
T ss_pred             chHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCH
Confidence              1   2345666666443  3467899999999999999876  4 589999999999999999887765443 12237


Q ss_pred             HHHHHHccc-cHHHHHHHHHHHhh
Q 025758          215 TRLAEKSNR-SLRRAILSFETCRV  237 (248)
Q Consensus       215 ~~l~~~~~g-~~r~~~~~l~~~~~  237 (248)
                      +.+++.+.| +.+++-+++..+..
T Consensus       377 ~~lA~~t~G~sGADi~~l~~eA~~  400 (437)
T 4b4t_L          377 EAAVKMSDGFNGADIRNCATEAGF  400 (437)
T ss_dssp             HHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHH
Confidence            888888765 56666666665543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.83  E-value=3.9e-20  Score=164.71  Aligned_cols=198  Identities=17%  Similarity=0.226  Sum_probs=126.6

Q ss_pred             cccccccHHHHHHHHHHhh------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758           12 LDQVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (248)
Q Consensus        12 ~~~lig~~~~~~~l~~~~~------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (248)
                      .++++|++.+++.+...+.      ..+.++++|+|||||||||+|+++++.+ .+..+.+...+....         ..
T Consensus        80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~~~~~---------~~  149 (543)
T 3m6a_A           80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGGVRDE---------SE  149 (543)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC---------------
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecccchh---------hh
Confidence            3457899999888765542      2234469999999999999999999965 333333322221000         00


Q ss_pred             eeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH----HHHHHHHHHHhc---
Q 025758           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKYS---  158 (248)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~----~~~ll~~le~~~---  158 (248)
                      . ......+++..+           ......+...       .....+++|||++.+.+..    ++.|++.++...   
T Consensus       150 ~-~g~~~~~ig~~~-----------~~~~~~~~~a-------~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~  210 (543)
T 3m6a_A          150 I-RGHRRTYVGAMP-----------GRIIQGMKKA-------GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSS  210 (543)
T ss_dssp             --------------------------CHHHHHHTT-------CSSSEEEEEEESSSCC---------CCGGGTCTTTTTB
T ss_pred             h-hhHHHHHhccCc-----------hHHHHHHHHh-------hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcce
Confidence            0 000000011110           0111112211       1133499999999998763    478888886432   


Q ss_pred             ------------CCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHH
Q 025758          159 ------------ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----------EGLQLPSGFATR  216 (248)
Q Consensus       159 ------------~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----------~~~~~~~~~~~~  216 (248)
                                  .+..||+++|.+..+.+++++||.++.|++|+.++...++...+..          .++.++++++..
T Consensus       211 ~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~  290 (543)
T 3m6a_A          211 FSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILD  290 (543)
T ss_dssp             CCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHH
T ss_pred             eecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHH
Confidence                        3457899999999999999999999999999999999999887632          245678999999


Q ss_pred             HHHHcc--ccHHHHHHHHHHHhhh
Q 025758          217 LAEKSN--RSLRRAILSFETCRVQ  238 (248)
Q Consensus       217 l~~~~~--g~~r~~~~~l~~~~~~  238 (248)
                      +++.+.  +++|.+.+.++.++..
T Consensus       291 l~~~~~~~~~vR~L~~~i~~~~~~  314 (543)
T 3m6a_A          291 IIRYYTREAGVRSLERQLAAICRK  314 (543)
T ss_dssp             HHHHHCCCSSSHHHHHHHHHHHHH
T ss_pred             HHHhCChhhchhHHHHHHHHHHHH
Confidence            987664  6888888888776643

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=8.9e-19  Score=150.40  Aligned_cols=195  Identities=19%  Similarity=0.273  Sum_probs=130.0

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHhh-----------cC-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~   71 (248)
                      ++-...+|+|+.|.+.+++.|...+.           -| ..+ ++||+||||||||++|+++|+++..+   -+.+++.
T Consensus       164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~---~~~v~~~  240 (428)
T 4b4t_K          164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA---FIRVNGS  240 (428)
T ss_dssp             ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE---EEEEEGG
T ss_pred             CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEecc
Confidence            34445799999999999999887663           12 223 49999999999999999999987321   1111110


Q ss_pred             ceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------
Q 025758           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------  143 (248)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------  143 (248)
                                           .   +.....| .....+++.+.....         ..|.|++|||+|.+.        
T Consensus       241 ---------------------~---l~~~~~G-e~e~~ir~lF~~A~~---------~aP~IifiDEiD~i~~~R~~~~~  286 (428)
T 4b4t_K          241 ---------------------E---FVHKYLG-EGPRMVRDVFRLARE---------NAPSIIFIDEVDSIATKRFDAQT  286 (428)
T ss_dssp             ---------------------G---TCCSSCS-HHHHHHHHHHHHHHH---------TCSEEEEEECTHHHHCSCSSSCS
T ss_pred             ---------------------h---hhccccc-hhHHHHHHHHHHHHH---------cCCCeeechhhhhhhccccCCCC
Confidence                                 0   0001111 122235555554443         256799999998541        


Q ss_pred             ---H---HHHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeec-CCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          144 ---R---EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRIN-SPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       144 ---~---~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~-~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                         .   ...+.|+..++...  .++.+|.+||++..+.+++++  |+ ..|.|+ .|+.++...++..++.+.++.- +
T Consensus       287 ~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~-~  365 (428)
T 4b4t_K          287 GSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAP-E  365 (428)
T ss_dssp             CCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCT-T
T ss_pred             CCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCc-c
Confidence               1   23456677777543  346789999999999999987  66 579996 7999999999988876654431 2


Q ss_pred             HHHHHHHHHccc-cHHHHHHHHHHHhh
Q 025758          212 GFATRLAEKSNR-SLRRAILSFETCRV  237 (248)
Q Consensus       212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~  237 (248)
                      -.++.++..+.| +.+++-++++.+..
T Consensus       366 ~dl~~lA~~t~G~sgadi~~l~~eA~~  392 (428)
T 4b4t_K          366 ADLDSLIIRNDSLSGAVIAAIMQEAGL  392 (428)
T ss_dssp             CCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            237888888765 56666666666554

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.82  E-value=1.4e-20  Score=158.06  Aligned_cols=202  Identities=14%  Similarity=0.135  Sum_probs=136.6

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      .|+++|+|..+++++|++.+++.+...+..+  .+++|+||||+|||++|++++..+.++   ...+.+.      +...
T Consensus        16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~~---~~~i~~~------~~~~   84 (331)
T 2r44_A           16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDLD---FHRIQFT------PDLL   84 (331)
T ss_dssp             HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTCC---EEEEECC------TTCC
T ss_pred             HHHHHHHHHhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCCC---eEEEecC------CCCC
Confidence            4899999999999999999999998887764  379999999999999999999965321   1111110      0000


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---  158 (248)
                      . .++     .....+.... +..             ...+    +.-...+++|||++.+++..++.|++.+++..   
T Consensus        85 ~-~~l-----~g~~~~~~~~-~~~-------------~~~~----g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~  140 (331)
T 2r44_A           85 P-SDL-----IGTMIYNQHK-GNF-------------EVKK----GPVFSNFILADEVNRSPAKVQSALLECMQEKQVTI  140 (331)
T ss_dssp             H-HHH-----HEEEEEETTT-TEE-------------EEEE----CTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred             h-hhc-----CCceeecCCC-Cce-------------Eecc----CcccccEEEEEccccCCHHHHHHHHHHHhcCceee
Confidence            0 000     0000000000 000             0000    00013599999999999999999999999742   


Q ss_pred             --------CCeeEEEEecCCC-----cccHHHhhhhh-eeeecCCCHHHHHHHHHHHHHH--------------------
Q 025758          159 --------ASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK--------------------  204 (248)
Q Consensus       159 --------~~~~~Il~t~~~~-----~~~~~l~sR~~-~i~~~~~~~~~~~~il~~~~~~--------------------  204 (248)
                              ....+|.++|...     .+.+++.+||. .+.+++|+.++..+++...+..                    
T Consensus       141 ~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~  220 (331)
T 2r44_A          141 GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRN  220 (331)
T ss_dssp             TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHH
T ss_pred             CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHH
Confidence                    2233444444222     28899999996 5999999999999999987654                    


Q ss_pred             --cCCCCCHHHHHHHHHHc-----cc---------------cHHHHHHHHHHHhhh
Q 025758          205 --EGLQLPSGFATRLAEKS-----NR---------------SLRRAILSFETCRVQ  238 (248)
Q Consensus       205 --~~~~~~~~~~~~l~~~~-----~g---------------~~r~~~~~l~~~~~~  238 (248)
                        .++.+++++++++++.+     .+               ++|.++++++.+...
T Consensus       221 ~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~  276 (331)
T 2r44_A          221 EINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAM  276 (331)
T ss_dssp             HHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHH
Confidence              26778999999998654     22               699999888776543

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.82  E-value=6e-19  Score=153.75  Aligned_cols=198  Identities=18%  Similarity=0.271  Sum_probs=133.0

Q ss_pred             cccc-CCCCCcccccccHHHHHHHHHHhhc-----------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceec
Q 025758            3 WVDK-YRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (248)
Q Consensus         3 ~~~k-y~p~~~~~lig~~~~~~~l~~~~~~-----------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~   69 (248)
                      |.+. ..+.+|+|++|++++++.+...+..           .+.+ +++|+||||||||++|+++++.+..+   .+.++
T Consensus         5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~---f~~is   81 (476)
T 2ce7_A            5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP---FFHIS   81 (476)
T ss_dssp             CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC---EEEEE
T ss_pred             eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---eeeCC
Confidence            4455 5566999999999998888776531           2233 49999999999999999999976321   11111


Q ss_pred             ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (248)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----  144 (248)
                      +.                     .....   ..+ ......+..+.....         ..|.||||||+|.+..     
T Consensus        82 ~~---------------------~~~~~---~~g-~~~~~~r~lf~~A~~---------~~p~ILfIDEid~l~~~r~~~  127 (476)
T 2ce7_A           82 GS---------------------DFVEL---FVG-VGAARVRDLFAQAKA---------HAPCIVFIDEIDAVGRHRGAG  127 (476)
T ss_dssp             GG---------------------GTTTC---CTT-HHHHHHHHHHHHHHH---------TCSEEEEEETGGGTCCC----
T ss_pred             HH---------------------HHHHH---Hhc-ccHHHHHHHHHHHHh---------cCCCEEEEechhhhhhhcccc
Confidence            11                     00100   011 112234444444332         2578999999988742     


Q ss_pred             ---------HHHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 025758          145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (248)
Q Consensus       145 ---------~~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~  210 (248)
                               ...+.|+..++..  ..+..+|.+||.+..+.+++.+  |+ ..+.++.|+.++..++++..+.+..+  +
T Consensus       128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--~  205 (476)
T 2ce7_A          128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--A  205 (476)
T ss_dssp             -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--C
T ss_pred             cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--c
Confidence                     2345666666643  3346788888988888888876  77 48999999999999999877765443  3


Q ss_pred             HHH-HHHHHHHccccH-HHHHHHHHHHhhhc
Q 025758          211 SGF-ATRLAEKSNRSL-RRAILSFETCRVQQ  239 (248)
Q Consensus       211 ~~~-~~~l~~~~~g~~-r~~~~~l~~~~~~~  239 (248)
                      +++ +..++..+.|+. |++.++++.+...+
T Consensus       206 ~~v~l~~la~~t~G~sgadL~~lv~~Aal~A  236 (476)
T 2ce7_A          206 EDVNLEIIAKRTPGFVGADLENLVNEAALLA  236 (476)
T ss_dssp             TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            333 788899998875 88888888776544

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.82  E-value=2.9e-20  Score=143.26  Aligned_cols=171  Identities=14%  Similarity=0.253  Sum_probs=113.0

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      .|+++|+|.+|++++|++..++.+..++..+...+++|+||+|+|||++|+.++..+.+...... ..+..+.       
T Consensus        11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~-~~~~~~~-------   82 (195)
T 1jbk_A           11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG-LKGRRVL-------   82 (195)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGG-GTTCEEE-------
T ss_pred             HHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh-hcCCcEE-------
Confidence            58899999999999999999999999988776677999999999999999999998754221100 0000000       


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH--------HHHHHHHH
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------AQHSLRRT  153 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--------~~~~ll~~  153 (248)
                            .......  ...............+.+..+..        ...+.+++|||++.+...        ..+.+..+
T Consensus        83 ------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~  146 (195)
T 1jbk_A           83 ------ALDMGAL--VAGAKYRGEFEERLKGVLNDLAK--------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA  146 (195)
T ss_dssp             ------EECHHHH--HTTTCSHHHHHHHHHHHHHHHHH--------STTTEEEEEETGGGGTT------CCCCHHHHHHH
T ss_pred             ------EeeHHHH--hccCCccccHHHHHHHHHHHHhh--------cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh
Confidence                  0000000  00000000011123333443332        235679999999988532        25566666


Q ss_pred             HHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHH
Q 025758          154 MEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVL  198 (248)
Q Consensus       154 le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il  198 (248)
                      ++.  .+..+|++++...     .+.+++.+||..+.|++|+.+++.+++
T Consensus       147 ~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          147 LAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             hcc--CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence            653  3567888888765     578999999999999999999987764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.81  E-value=4.7e-19  Score=146.82  Aligned_cols=195  Identities=22%  Similarity=0.242  Sum_probs=129.1

Q ss_pred             cccCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      +.++.+.+|++++|++.+++.|..++..             ....+++|+||||||||++|+++|+.+.   .+.+.+++
T Consensus         6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~   82 (301)
T 3cf0_A            6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKG   82 (301)
T ss_dssp             CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECH
T ss_pred             cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEh
Confidence            4567889999999999999999887742             2233499999999999999999999652   12222222


Q ss_pred             cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH-----
Q 025758           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----  145 (248)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----  145 (248)
                      ..+.               .     .+.    +. ....+...+.....         ..+.+++|||+|.+...     
T Consensus        83 ~~l~---------------~-----~~~----g~-~~~~~~~~f~~a~~---------~~p~il~iDEid~l~~~~~~~~  128 (301)
T 3cf0_A           83 PELL---------------T-----MWF----GE-SEANVREIFDKARQ---------AAPCVLFFDELDSIAKARGGNI  128 (301)
T ss_dssp             HHHH---------------H-----HHH----TT-CTTHHHHHHHHHHH---------TCSEEEEECSTTHHHHHHTTTT
T ss_pred             HHHH---------------h-----hhc----Cc-hHHHHHHHHHHHHh---------cCCeEEEEEChHHHhhccCCCc
Confidence            1100               0     000    00 01123344443332         24679999999976543     


Q ss_pred             ---------HHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          146 ---------AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       146 ---------~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                               ..+.|+..++..  ..+..+|.+||.+..+.+++.+  |+ ..+.|+.|+.++..+++...+.+.++. .+
T Consensus       129 ~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~  207 (301)
T 3cf0_A          129 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KD  207 (301)
T ss_dssp             CCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SS
T ss_pred             CCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-cc
Confidence                     357788888754  3456788899999889999988  88 589999999999999999888776543 12


Q ss_pred             HHHHHHHHHccc-cHHHHHHHHHHHh
Q 025758          212 GFATRLAEKSNR-SLRRAILSFETCR  236 (248)
Q Consensus       212 ~~~~~l~~~~~g-~~r~~~~~l~~~~  236 (248)
                      ..++.++..+.| +.+++.++++.++
T Consensus       208 ~~~~~la~~~~g~sg~dl~~l~~~a~  233 (301)
T 3cf0_A          208 VDLEFLAKMTNGFSGADLTEICQRAC  233 (301)
T ss_dssp             CCHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            225566655533 3345555554444

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.80  E-value=4e-18  Score=138.62  Aligned_cols=205  Identities=15%  Similarity=0.133  Sum_probs=121.4

Q ss_pred             CCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      .+|++++|+....+.+...+..  ....+++|+||+|||||++|++++..+.......+.+++..+.       .  .  
T Consensus         3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~-------~--~--   71 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-------E--N--   71 (265)
T ss_dssp             -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC-------H--H--
T ss_pred             cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC-------h--h--
Confidence            3789999998887776655432  2234599999999999999999998543222122222211000       0  0  


Q ss_pred             eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh----------
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY----------  157 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~----------  157 (248)
                      ... ....+..   .+.         +......... ........+++|||++.++...+..|++++++.          
T Consensus        72 ~~~-~~l~g~~---~~~---------~~g~~~~~~~-~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~  137 (265)
T 2bjv_A           72 LLD-SELFGHE---AGA---------FTGAQKRHPG-RFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQP  137 (265)
T ss_dssp             HHH-HHHHCCC---------------------CCCC-HHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--C
T ss_pred             HHH-HHhcCCc---ccc---------cccccccccc-hhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCccc
Confidence            000 0000000   000         0000000000 000113469999999999999999999999864          


Q ss_pred             -cCCeeEEEEecCCC-------cccHHHhhhhh--eeeecCCCH--HHHHHHHHHHH----HHcCC----CCCHHHHHHH
Q 025758          158 -SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIA----KKEGL----QLPSGFATRL  217 (248)
Q Consensus       158 -~~~~~~Il~t~~~~-------~~~~~l~sR~~--~i~~~~~~~--~~~~~il~~~~----~~~~~----~~~~~~~~~l  217 (248)
                       ..+..+|++||...       .+.+++.+|+.  .+.++++..  +++..++...+    .+.+.    .+++++++.+
T Consensus       138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L  217 (265)
T 2bjv_A          138 LQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETL  217 (265)
T ss_dssp             EECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHH
T ss_pred             ccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHH
Confidence             23567888888752       35689999984  577888775  56665544443    33444    6889999999


Q ss_pred             HHHc-cccHHHHHHHHHHHhhhc
Q 025758          218 AEKS-NRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       218 ~~~~-~g~~r~~~~~l~~~~~~~  239 (248)
                      .... .||+|++.+.++.++..+
T Consensus       218 ~~~~~~gn~reL~~~l~~~~~~~  240 (265)
T 2bjv_A          218 LNYRWPGNIRELKNVVERSVYRH  240 (265)
T ss_dssp             HHSCCTTHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCCHHHHHHHHHHHHHhC
Confidence            8775 899999999999987544

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.80  E-value=1.3e-18  Score=161.06  Aligned_cols=197  Identities=18%  Similarity=0.224  Sum_probs=133.4

Q ss_pred             cccccHHHHHHHHHHhhc--------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           14 QVIVHQDIAQNLKKLVTE--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~~--------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      +++|++.+++.+...+..        ++.. +++|+||+|||||++|++++..+.   ...+.+++..+...        
T Consensus       459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~---~~~~~i~~s~~~~~--------  527 (758)
T 1r6b_X          459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEYMER--------  527 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT---CEEEEEEGGGCSSS--------
T ss_pred             hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc---CCEEEEechhhcch--------
Confidence            478999998887776642        1222 599999999999999999999762   22333333222100        


Q ss_pred             ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------
Q 025758           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------  158 (248)
                          ......++..+   +.............+..         ..+.|++|||++.+++..++.|++++++..      
T Consensus       528 ----~~~~~l~g~~~---g~~g~~~~~~l~~~~~~---------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g  591 (758)
T 1r6b_X          528 ----HTVSRLIGAPP---GYVGFDQGGLLTDAVIK---------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNG  591 (758)
T ss_dssp             ----SCCSSSCCCCS---CSHHHHHTTHHHHHHHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTT
T ss_pred             ----hhHhhhcCCCC---CCcCccccchHHHHHHh---------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCC
Confidence                00111122111   11111111111222221         246799999999999999999999999752      


Q ss_pred             -----CCeeEEEEecCCC-------------------------cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHc--
Q 025758          159 -----ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE--  205 (248)
Q Consensus       159 -----~~~~~Il~t~~~~-------------------------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~--  205 (248)
                           .++.+|++||...                         .+.+++.+|+ .++.|++++.+++..++...+.+.  
T Consensus       592 ~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~  671 (758)
T 1r6b_X          592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQV  671 (758)
T ss_dssp             EEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHH
Confidence                 3466888888643                         5678999999 789999999999999999887632  


Q ss_pred             -------CCCCCHHHHHHHHHHc---cccHHHHHHHHHHHhh
Q 025758          206 -------GLQLPSGFATRLAEKS---NRSLRRAILSFETCRV  237 (248)
Q Consensus       206 -------~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~  237 (248)
                             .+.++++++++|++.+   .+++|.+.+.++..+.
T Consensus       672 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~  713 (758)
T 1r6b_X          672 QLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK  713 (758)
T ss_dssp             HHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred             HHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence                   3568899999999876   3448888888777664

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=99.80  E-value=1.1e-18  Score=147.28  Aligned_cols=175  Identities=14%  Similarity=0.101  Sum_probs=137.1

Q ss_pred             HHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcC
Q 025758           25 LKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG  103 (248)
Q Consensus        25 l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (248)
                      +.+.++ ++..+ ++|+||+|.||+++++.++..+.+++...                    +      ..+.+.. .  
T Consensus         9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~--------------------~------~~~~~~~-~--   58 (343)
T 1jr3_D            9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE--------------------H------HTFSIDP-N--   58 (343)
T ss_dssp             HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCE--------------------E------EEEECCT-T--
T ss_pred             HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCe--------------------e------EEEEecC-C--
Confidence            334444 35555 99999999999999999999875432110                    0      0122221 1  


Q ss_pred             cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCC-CCHHHHHHHHHHHHHhcCCeeEEEEecCC------CcccHH
Q 025758          104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSS------SKVTEA  176 (248)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~-l~~~~~~~ll~~le~~~~~~~~Il~t~~~------~~~~~~  176 (248)
                       .   ..++.++.+.. .|.    .++++|++|||++. ++..++++|++++++++.++.+|+++++.      ..+.++
T Consensus        59 -~---~~~~l~~~~~~-~pl----f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~  129 (343)
T 1jr3_D           59 -T---DWNAIFSLCQA-MSL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTA  129 (343)
T ss_dssp             -C---CHHHHHHHHHH-HHH----CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHH
T ss_pred             -C---CHHHHHHHhcC-cCC----ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHH
Confidence             1   13344433322 111    24689999999998 99999999999999999999999998774      468999


Q ss_pred             HhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhh
Q 025758          177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (248)
Q Consensus       177 l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~  238 (248)
                      +.|||.++.|.+++..++..++..++.++|+.++++++..+++.++||+|.+.+.|+.+..-
T Consensus       130 i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~  191 (343)
T 1jr3_D          130 LANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLL  191 (343)
T ss_dssp             HTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred             HHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999988863

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.80  E-value=9e-19  Score=161.96  Aligned_cols=187  Identities=17%  Similarity=0.311  Sum_probs=132.9

Q ss_pred             ccccccHHHHHHHHHHhhcC--------CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758           13 DQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~~--------~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      .+++|++.+++.+...+...        +. .+++|+||+|||||++|++++..+.+....-+.+++..+.         
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~---------  561 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM---------  561 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC---------
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc---------
Confidence            45789999998887776421        12 2599999999999999999999876655444444442221         


Q ss_pred             cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh------
Q 025758           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------  157 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~------  157 (248)
                                  .......+     ..   ...+.. .        .+.|++|||++.+++..++.|++++++.      
T Consensus       562 ------------~~~~~~~~-----~l---~~~~~~-~--------~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~  612 (758)
T 3pxi_A          562 ------------EKHSTSGG-----QL---TEKVRR-K--------PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSK  612 (758)
T ss_dssp             ------------SSCCCC--------C---HHHHHH-C--------SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC---
T ss_pred             ------------cccccccc-----hh---hHHHHh-C--------CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCC
Confidence                        00000000     01   111221 1        3459999999999999999999999973      


Q ss_pred             -----cCCeeEEEEecCCCc------------ccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHc---------CCCCC
Q 025758          158 -----SASCRLILCCNSSSK------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE---------GLQLP  210 (248)
Q Consensus       158 -----~~~~~~Il~t~~~~~------------~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~---------~~~~~  210 (248)
                           ..++.+|++||....            +.+++.+|+ .++.|++++.+++..++...+...         .+.++
T Consensus       613 g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~  692 (758)
T 3pxi_A          613 GRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELT  692 (758)
T ss_dssp             --CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred             CCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence                 245678999986543            788999999 899999999999999998877642         44688


Q ss_pred             HHHHHHHHHH---ccccHHHHHHHHHHHhh
Q 025758          211 SGFATRLAEK---SNRSLRRAILSFETCRV  237 (248)
Q Consensus       211 ~~~~~~l~~~---~~g~~r~~~~~l~~~~~  237 (248)
                      ++++++|++.   ..+++|.+.+.++....
T Consensus       693 ~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~  722 (758)
T 3pxi_A          693 DAAKAKVAEEGVDLEYGARPLRRAIQKHVE  722 (758)
T ss_dssp             HHHHHHHHGGGCCTTTTTTTHHHHHHHHTH
T ss_pred             HHHHHHHHHhCCCCCCCChHHHHHHHHHHH
Confidence            9999999876   35788888887776553

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.79  E-value=6.7e-19  Score=164.62  Aligned_cols=205  Identities=19%  Similarity=0.286  Sum_probs=137.4

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      .|+++|+|.+|++++|++..++.+...+..+..++++|+||||||||++|+.+|+.+.+..... ...+..+        
T Consensus       159 ~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~-~l~~~~~--------  229 (854)
T 1qvr_A          159 DLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE-GLKGKRI--------  229 (854)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT-TSTTCEE--------
T ss_pred             hHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCch-hhcCCeE--------
Confidence            4889999999999999999999999998887777899999999999999999999774322100 0001100        


Q ss_pred             cccceeeecccceeeeCCCCc--Cc----chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------HHHH
Q 025758           82 IDLELTTLSSANHVELSPSDA--GF----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------REAQ  147 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------~~~~  147 (248)
                                   +.+.....  +.    .....+...+..+..        ...+.|++|||++.+.        ....
T Consensus       230 -------------~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~--------~~~~~iL~IDEi~~l~~~~~~~g~~~~~  288 (854)
T 1qvr_A          230 -------------VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ--------SQGEVILFIDELHTVVGAGKAEGAVDAG  288 (854)
T ss_dssp             -------------EEECC-----------CHHHHHHHHHHHHHT--------TCSSEEEEECCC----------------
T ss_pred             -------------EEeehHHhhccCccchHHHHHHHHHHHHHHh--------cCCCeEEEEecHHHHhccCCccchHHHH
Confidence                         11111110  00    111223344444433        2256799999999886        3445


Q ss_pred             HHHHHHHHHhcCCeeEEEEecCCC----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 025758          148 HSLRRTMEKYSASCRLILCCNSSS----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE  219 (248)
Q Consensus       148 ~~ll~~le~~~~~~~~Il~t~~~~----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~  219 (248)
                      +.|..+++.  ....+|.+++...    .+.+++.+||..+.|++|+.++...++...+.+    .++.++++++..++.
T Consensus       289 ~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~  366 (854)
T 1qvr_A          289 NMLKPALAR--GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAAT  366 (854)
T ss_dssp             ---HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred             HHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHH
Confidence            567777764  3456788877654    367899999999999999999999999877664    478889999999988


Q ss_pred             Hcccc------HHHHHHHHHHHhhh
Q 025758          220 KSNRS------LRRAILSFETCRVQ  238 (248)
Q Consensus       220 ~~~g~------~r~~~~~l~~~~~~  238 (248)
                      .+.|.      ++.++++++.++..
T Consensus       367 ls~r~i~~~~lp~kai~lldea~a~  391 (854)
T 1qvr_A          367 LSHRYITERRLPDKAIDLIDEAAAR  391 (854)
T ss_dssp             HHHHHCCSSCTHHHHHHHHHHHHHH
T ss_pred             HHhhhcccccChHHHHHHHHHHHHH
Confidence            77542      77788888777643

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.78  E-value=1e-18  Score=161.54  Aligned_cols=198  Identities=15%  Similarity=0.241  Sum_probs=137.7

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      .|+++|+|.++++++|++..++.+...+..+..++++|+||||||||++|+.+|..+.+......-.+.. +        
T Consensus       169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~--------  239 (758)
T 3pxi_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-V--------  239 (758)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-E--------
T ss_pred             HHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-E--------
Confidence            5899999999999999999999999999887778899999999999999999999875432111000000 0        


Q ss_pred             cccceeeecccceeeeCC--CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 025758           82 IDLELTTLSSANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~  159 (248)
                                   +.+..  ...+. ....+...+..+..         ..+.|+|||    .....++.|+..++  ..
T Consensus       240 -------------~~~~~g~~~~G~-~e~~l~~~~~~~~~---------~~~~iLfiD----~~~~~~~~L~~~l~--~~  290 (758)
T 3pxi_A          240 -------------MTLDMGTKYRGE-FEDRLKKVMDEIRQ---------AGNIILFID----AAIDASNILKPSLA--RG  290 (758)
T ss_dssp             -------------ECC-----------CTTHHHHHHHHHT---------CCCCEEEEC----C--------CCCTT--SS
T ss_pred             -------------EEecccccccch-HHHHHHHHHHHHHh---------cCCEEEEEc----CchhHHHHHHHHHh--cC
Confidence                         01100  00000 01123444554443         245699999    33456777777776  34


Q ss_pred             CeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccc------c
Q 025758          160 SCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR------S  224 (248)
Q Consensus       160 ~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~g------~  224 (248)
                      ...+|.+||...     .+.+++++||..+.|++|+.+++..++...+.+    .++.++++++..++..+.+      .
T Consensus       291 ~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~  370 (758)
T 3pxi_A          291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFL  370 (758)
T ss_dssp             SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred             CEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcC
Confidence            567888888877     688999999999999999999999999977665    5778999999999877643      3


Q ss_pred             HHHHHHHHHHHhh
Q 025758          225 LRRAILSFETCRV  237 (248)
Q Consensus       225 ~r~~~~~l~~~~~  237 (248)
                      ++.++.+++.++.
T Consensus       371 p~~ai~ll~~a~~  383 (758)
T 3pxi_A          371 PDKAIDLIDEAGS  383 (758)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHH
Confidence            5678888877764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.78  E-value=8.1e-19  Score=164.08  Aligned_cols=201  Identities=16%  Similarity=0.273  Sum_probs=135.2

Q ss_pred             ccccccHHHHHHHHHHhhcC--------CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758           13 DQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~~--------~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      ++++|++.+++.+...+...        +. .+++|+||+|||||++|++++..+.+.....+.+++..+...       
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~-------  630 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK-------  630 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS-------
T ss_pred             cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccch-------
Confidence            56799999998887776432        12 259999999999999999999988665544444444322100       


Q ss_pred             cceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----
Q 025758           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----  158 (248)
                           ......++..+...+...   .......+.. .        .+.+++|||++.+++..++.|++++++..     
T Consensus       631 -----~~~s~l~g~~~~~~G~~~---~g~l~~~~~~-~--------~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~  693 (854)
T 1qvr_A          631 -----HAVSRLIGAPPGYVGYEE---GGQLTEAVRR-R--------PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH  693 (854)
T ss_dssp             -----GGGGGC-----------------CHHHHHHH-C--------SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSS
T ss_pred             -----hHHHHHcCCCCCCcCccc---cchHHHHHHh-C--------CCeEEEEecccccCHHHHHHHHHHhccCceECCC
Confidence                 000001111111111111   1111222222 1        35699999999999999999999999753     


Q ss_pred             ------CCeeEEEEecCC--------------------------CcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH-
Q 025758          159 ------ASCRLILCCNSS--------------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK-  204 (248)
Q Consensus       159 ------~~~~~Il~t~~~--------------------------~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~-  204 (248)
                            .++.+|++||..                          ..+.++|.+|+ .++.|.|++.+++..++...+.+ 
T Consensus       694 g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~  773 (854)
T 1qvr_A          694 GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL  773 (854)
T ss_dssp             SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence                  345688888862                          13567888999 78899999999999999887663 


Q ss_pred             ------c--CCCCCHHHHHHHHHHcc---ccHHHHHHHHHHHhh
Q 025758          205 ------E--GLQLPSGFATRLAEKSN---RSLRRAILSFETCRV  237 (248)
Q Consensus       205 ------~--~~~~~~~~~~~l~~~~~---g~~r~~~~~l~~~~~  237 (248)
                            .  .+.++++++++|++.+.   |++|.+.+.++....
T Consensus       774 ~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~  817 (854)
T 1qvr_A          774 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE  817 (854)
T ss_dssp             HHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred             HHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence                  1  34689999999998764   899999999887764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.78  E-value=1.7e-18  Score=156.17  Aligned_cols=233  Identities=18%  Similarity=0.171  Sum_probs=140.6

Q ss_pred             cccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc
Q 025758            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      ..+|+|++|++++|++.+++.+...+..+  .+++|+|||||||||+|+++++.+.+...+.+.+.+.......+.....
T Consensus        32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~  109 (604)
T 3k1j_A           32 EIEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV  109 (604)
T ss_dssp             GSCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred             cccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence            46899999999999999999999999877  3799999999999999999999554433344444433221111100000


Q ss_pred             cc------------------------eeeecccce--eee-CCCCcCc----chhHHHHHHHHHHHhcCC---CcCC---
Q 025758           84 LE------------------------LTTLSSANH--VEL-SPSDAGF----QDRYVVQEVIKEMAKNRP---IDTK---  126 (248)
Q Consensus        84 ~~------------------------~~~~~~~~~--~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~---  126 (248)
                      ..                        +........  +.. .....+.    ....+..+.+..+. ..+   ..++   
T Consensus       110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~-~~~~~~g~~~~g~  188 (604)
T 3k1j_A          110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVR-HDPFQSGGLGTPA  188 (604)
T ss_dssp             ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEEC-CCCC----CCCCG
T ss_pred             ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEE-echhhcCCccccc
Confidence            00                        000000000  000 0000000    00111111111110 000   0000   


Q ss_pred             ---------CCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---------------------CCeeEEEEecCC--Cccc
Q 025758          127 ---------GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------------------ASCRLILCCNSS--SKVT  174 (248)
Q Consensus       127 ---------~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---------------------~~~~~Il~t~~~--~~~~  174 (248)
                               ...++.+++|||++.|++..++.|+++|++..                     .+.++|+++|..  ..+.
T Consensus       189 ~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~  268 (604)
T 3k1j_A          189 HERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMH  268 (604)
T ss_dssp             GGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSC
T ss_pred             cccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcC
Confidence                     01245699999999999999999999998532                     234588888876  5799


Q ss_pred             HHHhhhhh----eeeecCC---CHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc---cc-------cHHHHHHHH
Q 025758          175 EAIRSRCL----NIRINSP---TEEQIVKVLEFIAKKE-----GLQLPSGFATRLAEKS---NR-------SLRRAILSF  232 (248)
Q Consensus       175 ~~l~sR~~----~i~~~~~---~~~~~~~il~~~~~~~-----~~~~~~~~~~~l~~~~---~g-------~~r~~~~~l  232 (248)
                      ++|++||.    .+.|+..   ..+.+..++.......     ...++++++..|++.+   .|       +.|++.+++
T Consensus       269 ~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~ll  348 (604)
T 3k1j_A          269 PALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIV  348 (604)
T ss_dssp             HHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHH
T ss_pred             HHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHH
Confidence            99999994    5565433   3455666665544332     2568899999999765   34       699999999


Q ss_pred             HHHhhhc
Q 025758          233 ETCRVQQ  239 (248)
Q Consensus       233 ~~~~~~~  239 (248)
                      +.+...+
T Consensus       349 r~A~~~A  355 (604)
T 3k1j_A          349 RAAGDIA  355 (604)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876443

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.77  E-value=1.2e-19  Score=139.33  Aligned_cols=163  Identities=16%  Similarity=0.254  Sum_probs=106.0

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      .|.++|+|.+|++++|++..++.+..++..+...+++|+||+|+|||++|+.++..+........ ..+..+.       
T Consensus        11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~-~~~~~~~-------   82 (187)
T 2p65_A           11 DLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDS-LKGRKLV-------   82 (187)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTT-TTTCEEE-------
T ss_pred             HHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcch-hcCCeEE-------
Confidence            58899999999999999999999999988776777999999999999999999997744221100 0000000       


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------HHHHHHHHH
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRR  152 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~ll~  152 (248)
                            .........  .............+.+..+..        ...+.+++|||++.+.         ....+.+..
T Consensus        83 ------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~  146 (187)
T 2p65_A           83 ------SLDLSSLIA--GAKYRGDFEERLKSILKEVQD--------AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKP  146 (187)
T ss_dssp             ------EECHHHHHH--HCCSHHHHHHHHHHHHHHHHH--------TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHH
T ss_pred             ------EEeHHHhhc--CCCchhHHHHHHHHHHHHHHh--------cCCceEEEEeCHHHhcccccccccchHHHHHHHH
Confidence                  000000000  000000011123333443333        2256799999999886         344556666


Q ss_pred             HHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCC
Q 025758          153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPT  190 (248)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~  190 (248)
                      .++.  ....+|++++.+.     .+.+++++||..+.+++|+
T Consensus       147 ~~~~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~  187 (187)
T 2p65_A          147 MLAR--GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS  187 (187)
T ss_dssp             HHHT--TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred             HHhc--CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence            6654  3467888888764     5789999999989998875

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.77  E-value=1.3e-18  Score=160.89  Aligned_cols=209  Identities=14%  Similarity=0.205  Sum_probs=138.6

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      .|+++|+|.+|++++|++..++.+...+......+++|+||+|||||++|+.++..+.+........+...+.       
T Consensus       175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-------  247 (758)
T 1r6b_X          175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-------  247 (758)
T ss_dssp             BHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-------
T ss_pred             hHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-------
Confidence            5899999999999999999999999998877777799999999999999999999875432111000000000       


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------HHHHHHHHH
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRR  152 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~ll~  152 (248)
                             ......+. .....+ .........++.+.         ...+.+++|||++.+.         ....+.|..
T Consensus       248 -------~~~~~l~~-~~~~~g-~~e~~l~~~~~~~~---------~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~  309 (758)
T 1r6b_X          248 -------LDIGSLLA-GTKYRG-DFEKRFKALLKQLE---------QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP  309 (758)
T ss_dssp             -------CCCC---C-CCCCSS-CHHHHHHHHHHHHS---------SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSS
T ss_pred             -------EcHHHHhc-cccccc-hHHHHHHHHHHHHH---------hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHH
Confidence                   00000000 000111 11112333333332         1246799999999882         223333444


Q ss_pred             HHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccc
Q 025758          153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR  223 (248)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~g  223 (248)
                      +++.  ....+|.+++.+.     ...+++.+||..+.|++|+.+++.+++..++..    .++.++++++..++..+.+
T Consensus       310 ~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~  387 (758)
T 1r6b_X          310 LLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK  387 (758)
T ss_dssp             CSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             HHhC--CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Confidence            4332  3456777777542     456789999999999999999999999987765    5788999999999877654


Q ss_pred             ------cHHHHHHHHHHHhh
Q 025758          224 ------SLRRAILSFETCRV  237 (248)
Q Consensus       224 ------~~r~~~~~l~~~~~  237 (248)
                            .+..++++++.++.
T Consensus       388 ~i~~~~lp~~~i~lld~a~~  407 (758)
T 1r6b_X          388 YINDRHLPDKAIDVIDEAGA  407 (758)
T ss_dssp             HCTTSCTTHHHHHHHHHHHH
T ss_pred             hcccccCchHHHHHHHHHHH
Confidence                  24567777776654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.77  E-value=2.1e-18  Score=147.18  Aligned_cols=194  Identities=17%  Similarity=0.213  Sum_probs=123.2

Q ss_pred             cccccHHHHHHHHHHhh----c-------------------------C-CCCeeEEECCCCCCHHHHHHHHHHHHcCCCc
Q 025758           14 QVIVHQDIAQNLKKLVT----E-------------------------Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGA   63 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~----~-------------------------~-~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~   63 (248)
                      .++||+.+++.|..++.    .                         . ...+++|+||+|||||++|+++|..+..+  
T Consensus        22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~--   99 (376)
T 1um8_A           22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP--   99 (376)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC--
T ss_pred             HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCC--
Confidence            36899999998887761    0                         1 23359999999999999999999966211  


Q ss_pred             ccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC
Q 025758           64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS  143 (248)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~  143 (248)
                       .+.+++..+.                .   -++.    +..........+..    ....+ ....+.+++|||++.+.
T Consensus       100 -~~~~~~~~~~----------------~---~~~~----g~~~~~~~~~~~~~----~~~~~-~~~~~~vl~iDEi~~l~  150 (376)
T 1um8_A          100 -IAISDATSLT----------------E---AGYV----GEDVENILTRLLQA----SDWNV-QKAQKGIVFIDEIDKIS  150 (376)
T ss_dssp             -EEEEEGGGCC-------------------------------CTHHHHHHHHH----TTTCH-HHHTTSEEEEETGGGC-
T ss_pred             -EEEecchhhh----------------h---cCcC----CccHHHHHHHHHhh----ccchh-hhcCCeEEEEcCHHHHh
Confidence             1111111000                0   0010    10111112222221    11000 01245699999999998


Q ss_pred             HH--------------HHHHHHHHHHHhc---------------------CCeeEEEEecCC------------------
Q 025758          144 RE--------------AQHSLRRTMEKYS---------------------ASCRLILCCNSS------------------  170 (248)
Q Consensus       144 ~~--------------~~~~ll~~le~~~---------------------~~~~~Il~t~~~------------------  170 (248)
                      ..              .++.|++++++..                     .+..+|+++|..                  
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~  230 (376)
T 1um8_A          151 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT  230 (376)
T ss_dssp             -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred             hhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence            77              8999999999541                     334566666520                  


Q ss_pred             -----------------------CcccHHHhhhh-heeeecCCCHHHHHHHHHH----HHH---------HcCCCCCHHH
Q 025758          171 -----------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEF----IAK---------KEGLQLPSGF  213 (248)
Q Consensus       171 -----------------------~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~----~~~---------~~~~~~~~~~  213 (248)
                                             ..+.+++.+|+ .++.|++++.+++..++..    .+.         ..++.+++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  310 (376)
T 1um8_A          231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEA  310 (376)
T ss_dssp             CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHH
T ss_pred             chhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHH
Confidence                                   12568899999 7899999999999999862    211         1245688999


Q ss_pred             HHHHHHHcc---ccHHHHHHHHHHHhhh
Q 025758          214 ATRLAEKSN---RSLRRAILSFETCRVQ  238 (248)
Q Consensus       214 ~~~l~~~~~---g~~r~~~~~l~~~~~~  238 (248)
                      +++|++.+.   |++|.+.+.++.++..
T Consensus       311 ~~~l~~~~~~~~~~~R~L~~~le~~~~~  338 (376)
T 1um8_A          311 IKEIAQLALERKTGARGLRAIIEDFCLD  338 (376)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence            999998865   9999999999888764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.77  E-value=1.1e-19  Score=148.02  Aligned_cols=198  Identities=15%  Similarity=0.241  Sum_probs=125.6

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHhh-----------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~~-----------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~   72 (248)
                      .++.+.+|++++|++.+++.+...+.           ....+ +++|+||+|||||++|+++|..+..+-   +.+++..
T Consensus         3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~v~~~~   79 (268)
T 2r62_A            3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF---FSMGGSS   79 (268)
T ss_dssp             CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC---CCCCSCT
T ss_pred             ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEechHH
Confidence            57888999999999998888887664           12233 499999999999999999999763321   1111110


Q ss_pred             eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHH------
Q 025758           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA------  146 (248)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~------  146 (248)
                      +.                 ....+.....        ....+.....         ..+.+++|||+|.+....      
T Consensus        80 ~~-----------------~~~~~~~~~~--------~~~~~~~a~~---------~~~~vl~iDEid~l~~~~~~~~~~  125 (268)
T 2r62_A           80 FI-----------------EMFVGLGASR--------VRDLFETAKK---------QAPSIIFIDEIDAIGKSRAAGGVV  125 (268)
T ss_dssp             TT-----------------TSCSSSCSSS--------SSTTHHHHHH---------SCSCEEEESCGGGTTC--------
T ss_pred             HH-----------------HhhcchHHHH--------HHHHHHHHHh---------cCCeEEEEeChhhhcccccccccC
Confidence            00                 0000000000        1112332222         145699999999886432      


Q ss_pred             ---------HHHHHHHHHHhcC---CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          147 ---------QHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       147 ---------~~~ll~~le~~~~---~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                               .+.|++.++....   ...+|.+||.+..+.+++.+  |+ ..+.|++|+.++..+++...+....+. ++
T Consensus       126 ~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~  204 (268)
T 2r62_A          126 SGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-ND  204 (268)
T ss_dssp             --CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SS
T ss_pred             CCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-Cc
Confidence                     3445666654322   24677788888888888888  66 679999999999999998877544332 22


Q ss_pred             HHHHHHHHHccc-cHHHHHHHHHHHhhhcc
Q 025758          212 GFATRLAEKSNR-SLRRAILSFETCRVQQL  240 (248)
Q Consensus       212 ~~~~~l~~~~~g-~~r~~~~~l~~~~~~~~  240 (248)
                      ..++.++..+.| +.|++.++++.+...+.
T Consensus       205 ~~~~~la~~~~g~~g~dl~~l~~~a~~~a~  234 (268)
T 2r62_A          205 VNLQEVAKLTAGLAGADLANIINEAALLAG  234 (268)
T ss_dssp             CCTTTTTSSSCSSCHHHHHHHHHHHHHTTS
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            235666666655 45677777777765543

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.76  E-value=8.3e-18  Score=147.54  Aligned_cols=196  Identities=17%  Similarity=0.232  Sum_probs=132.4

Q ss_pred             cCCCCCcccccccHHHHHHHHHHhhc-------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758            6 KYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (248)
Q Consensus         6 ky~p~~~~~lig~~~~~~~l~~~~~~-------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~   72 (248)
                      .+.+.+|++++|+..+++.|..++..             ....+++|+||||||||++|++++..+.   ...+.+++..
T Consensus       197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~vn~~~  273 (489)
T 3hu3_A          197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPE  273 (489)
T ss_dssp             HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS---SEEEEEEHHH
T ss_pred             ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC---CCEEEEEchH
Confidence            45678899999999999999887752             2233599999999999999999998641   1111111100


Q ss_pred             eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------
Q 025758           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------  143 (248)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------  143 (248)
                      +                        .....+ .........+.....         ..+.+|||||+|.+.         
T Consensus       274 l------------------------~~~~~g-~~~~~~~~~f~~A~~---------~~p~iLfLDEId~l~~~~~~~~~~  319 (489)
T 3hu3_A          274 I------------------------MSKLAG-ESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGE  319 (489)
T ss_dssp             H------------------------HTSCTT-HHHHHHHHHHHHHHH---------TCSEEEEEESHHHHCBCTTSCCCH
T ss_pred             h------------------------hhhhcc-hhHHHHHHHHHHHHh---------cCCcEEEecchhhhccccccccch
Confidence            0                        000011 111123334443332         246799999996553         


Q ss_pred             --HHHHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 025758          144 --REAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (248)
Q Consensus       144 --~~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~  216 (248)
                        ...++.|++.++...  .+..+|.+||.+..+.+++++  |+ ..+.|+.|+.++..+++..++....+.. +..+..
T Consensus       320 ~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~l~~  398 (489)
T 3hu3_A          320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-DVDLEQ  398 (489)
T ss_dssp             HHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-TCCHHH
T ss_pred             HHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhhHHH
Confidence              356788999998653  346788889999899999998  55 4799999999999999998876655442 233677


Q ss_pred             HHHHccc-cHHHHHHHHHHHhhhc
Q 025758          217 LAEKSNR-SLRRAILSFETCRVQQ  239 (248)
Q Consensus       217 l~~~~~g-~~r~~~~~l~~~~~~~  239 (248)
                      ++..+.| +.+++.++++.+...+
T Consensus       399 la~~t~g~s~~dL~~L~~~A~~~a  422 (489)
T 3hu3_A          399 VANETHGHVGADLAALCSEAALQA  422 (489)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCcHHHHHHHHHHHHHHH
Confidence            7777766 4666666666665444

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.76  E-value=1.2e-16  Score=132.46  Aligned_cols=201  Identities=17%  Similarity=0.149  Sum_probs=125.7

Q ss_pred             ccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec
Q 025758           13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (248)
                      ++++|+....+.+...+..  ....+++|+||+|||||++|++++..........+.+++..+       ..  ..  ..
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~-------~~--~l--~~   70 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL-------NE--SL--LE   70 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC-------CH--HH--HH
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC-------Ch--HH--HH
Confidence            4678988877777666543  233459999999999999999999854222222222222100       00  00  00


Q ss_pred             ccceeeeCCCCcCcchhH--HHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc----------
Q 025758           91 SANHVELSPSDAGFQDRY--VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------  158 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----------  158 (248)
                       ....+..   .+.....  .....+.            ..+..+++|||++.|+...+..|++++++..          
T Consensus        71 -~~lfg~~---~g~~tg~~~~~~g~~~------------~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~  134 (304)
T 1ojl_A           71 -SELFGHE---KGAFTGADKRREGRFV------------EADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTI  134 (304)
T ss_dssp             -HHHTCCC---SSCCC---CCCCCHHH------------HHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCC
T ss_pred             -HHhcCcc---ccccCchhhhhcCHHH------------hcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccc
Confidence             0000000   0000000  0000011            1123589999999999999999999998753          


Q ss_pred             -CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCC--HHHHHHHHHHHHHH----c---CCCCCHHHHHHHHH
Q 025758          159 -ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPT--EEQIVKVLEFIAKK----E---GLQLPSGFATRLAE  219 (248)
Q Consensus       159 -~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~--~~~~~~il~~~~~~----~---~~~~~~~~~~~l~~  219 (248)
                       .+..+|++||...       .+.+++.+|+  ..+.+|++.  .+++..++...+.+    .   ...+++++++.+..
T Consensus       135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~  214 (304)
T 1ojl_A          135 SVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH  214 (304)
T ss_dssp             BCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred             cCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence             3467888888762       3567888997  456788877  46666666554432    2   24688999999999


Q ss_pred             Hc-cccHHHHHHHHHHHhhhcc
Q 025758          220 KS-NRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       220 ~~-~g~~r~~~~~l~~~~~~~~  240 (248)
                      .. .||+|++.+.++.++..+.
T Consensus       215 ~~wpGnvReL~~~l~~~~~~~~  236 (304)
T 1ojl_A          215 YDWPGNIRELENAIERAVVLLT  236 (304)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC
Confidence            87 9999999999999886543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.76  E-value=1.1e-17  Score=146.69  Aligned_cols=198  Identities=17%  Similarity=0.260  Sum_probs=127.6

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhh---c--------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT---E--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~---~--------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      |.+. .+.+|+|++|+++++..+...+.   .        .+.+ +++|+|||||||||+|+++++.+.   .+.+.+++
T Consensus        22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~---~~~i~i~g   97 (499)
T 2dhr_A           22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG   97 (499)
T ss_dssp             ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred             eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeh
Confidence            4444 78999999999999888776542   1        1233 499999999999999999999652   23333333


Q ss_pred             cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH------
Q 025758           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------  144 (248)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------  144 (248)
                      ..+.                        ....+    . ....+..+-....     ...+.+++|||+|.+..      
T Consensus        98 ~~~~------------------------~~~~g----~-~~~~v~~lfq~a~-----~~~p~il~IDEId~l~~~r~~~~  143 (499)
T 2dhr_A           98 SDFV------------------------EMFVG----V-GAARVRDLFETAK-----RHAPCIVFIDEIDAVGRKRGSGV  143 (499)
T ss_dssp             GGGT------------------------SSCTT----H-HHHHHHHHTTTSS-----SSSSCEEEEECGGGTCCCSSSST
T ss_pred             hHHH------------------------Hhhhh----h-HHHHHHHHHHHHH-----hcCCCEEEEehHHHHHHhhccCc
Confidence            2111                        00001    0 1111222211110     23567999999987631      


Q ss_pred             -----HH---HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          145 -----EA---QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       145 -----~~---~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                           ..   .+.++..++....  ...++.++|.+..+.+++.+++   ..+.++.|+.+++.+++...+.  ++.+++
T Consensus       144 ~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~  221 (499)
T 2dhr_A          144 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAE  221 (499)
T ss_dssp             TTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCC
T ss_pred             CCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCCh
Confidence                 22   2344444443322  2456667788878888998854   5899999999999999986553  445554


Q ss_pred             HH-HHHHHHHccccH-HHHHHHHHHHhhhcc
Q 025758          212 GF-ATRLAEKSNRSL-RRAILSFETCRVQQL  240 (248)
Q Consensus       212 ~~-~~~l~~~~~g~~-r~~~~~l~~~~~~~~  240 (248)
                      ++ +..++..+.|+. |++.++++.+...+.
T Consensus       222 dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~  252 (499)
T 2dhr_A          222 DVDLALLAKRTPGFVGADLENLLNEAALLAA  252 (499)
T ss_dssp             SSTTHHHHTTSCSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            44 888999999876 898888888775443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.75  E-value=3.7e-17  Score=132.06  Aligned_cols=198  Identities=17%  Similarity=0.254  Sum_probs=124.8

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhh---c--------CCC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT---E--------QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~---~--------~~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      ++..+.+.+|++++|++.++..+.....   .        -.. .+++|+|||||||||+++++++.+.   .+.+.+++
T Consensus         6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~   82 (254)
T 1ixz_A            6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG   82 (254)
T ss_dssp             --CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred             cccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeeH
Confidence            3567788999999999888776665432   1        122 2499999999999999999998652   33333333


Q ss_pred             cceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH------
Q 025758           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------  144 (248)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------  144 (248)
                      ..+.                     ...   .+ .....+...+....         ...+.++++||+|.+..      
T Consensus        83 ~~~~---------------------~~~---~~-~~~~~i~~~~~~~~---------~~~~~i~~~Deid~l~~~~~~~~  128 (254)
T 1ixz_A           83 SDFV---------------------EMF---VG-VGAARVRDLFETAK---------RHAPCIVFIDEIDAVGRKRGSGV  128 (254)
T ss_dssp             HHHH---------------------HSC---TT-HHHHHHHHHHHHHT---------TSSSEEEEEETHHHHHC------
T ss_pred             HHHH---------------------HHH---hh-HHHHHHHHHHHHHH---------hcCCeEEEehhhhhhhcccCccc
Confidence            2111                     000   00 00111222233221         12467999999975521      


Q ss_pred             -----H---HHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHhhh--h-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 025758          145 -----E---AQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (248)
Q Consensus       145 -----~---~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR--~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  211 (248)
                           .   ..+.++..++.....  ..++.+++++..+.+++.+|  + ..+.++.|+.++..++++..+.  ++.+++
T Consensus       129 ~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~  206 (254)
T 1ixz_A          129 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAE  206 (254)
T ss_dssp             ---CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCT
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCc
Confidence                 1   123444444433222  35667788888899999884  4 5799999999999999987654  444444


Q ss_pred             HH-HHHHHHHcccc-HHHHHHHHHHHhhhc
Q 025758          212 GF-ATRLAEKSNRS-LRRAILSFETCRVQQ  239 (248)
Q Consensus       212 ~~-~~~l~~~~~g~-~r~~~~~l~~~~~~~  239 (248)
                      ++ +..++..+.|. .|++.++++.+...+
T Consensus       207 ~~~~~~la~~~~G~~~~dl~~~~~~a~~~a  236 (254)
T 1ixz_A          207 DVDLALLAKRTPGFVGADLENLLNEAALLA  236 (254)
T ss_dssp             TCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            44 88899998885 478888887766543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.74  E-value=2.9e-17  Score=134.03  Aligned_cols=183  Identities=17%  Similarity=0.291  Sum_probs=111.9

Q ss_pred             ccccccHHHHHHHHH-------Hhh---cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccc
Q 025758           13 DQVIVHQDIAQNLKK-------LVT---EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (248)
Q Consensus        13 ~~lig~~~~~~~l~~-------~~~---~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (248)
                      ..++|+....+.+..       .+.   .....+++|+||+|||||++|++++..+.++   .+.++       ++    
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~---~~~i~-------~~----   98 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP---FIKIC-------SP----   98 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS---EEEEE-------CG----
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC---EEEEe-------CH----
Confidence            456776655443333       333   2223349999999999999999999975221   01110       00    


Q ss_pred             ccceeeecccceeeeCCCCcCcchh---HHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC----------CHHHHHH
Q 025758           83 DLELTTLSSANHVELSPSDAGFQDR---YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL----------SREAQHS  149 (248)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l----------~~~~~~~  149 (248)
                                .  .+    .+....   ....+.+....         ...+.+++|||+|.|          .....+.
T Consensus        99 ----------~--~~----~g~~~~~~~~~~~~~~~~~~---------~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~  153 (272)
T 1d2n_A           99 ----------D--KM----IGFSETAKCQAMKKIFDDAY---------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQA  153 (272)
T ss_dssp             ----------G--GC----TTCCHHHHHHHHHHHHHHHH---------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHH
T ss_pred             ----------H--Hh----cCCchHHHHHHHHHHHHHHH---------hcCCcEEEEEChhhhhccCCCChhHHHHHHHH
Confidence                      0  00    111111   12233333222         235789999999876          3334445


Q ss_pred             HHHHHHHh---cCCeeEEEEecCCCcccH-HHhhhh-heeeecCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHccc
Q 025758          150 LRRTMEKY---SASCRLILCCNSSSKVTE-AIRSRC-LNIRINSPTE-EQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR  223 (248)
Q Consensus       150 ll~~le~~---~~~~~~Il~t~~~~~~~~-~l~sR~-~~i~~~~~~~-~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g  223 (248)
                      |...++..   .....+|.+||.+..+.+ .+.+|+ ..+.+++++. +++..++..    .+ .++++.+..+++.+.|
T Consensus       154 L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~~-~~~~~~~~~l~~~~~g  228 (272)
T 1d2n_A          154 LLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----LG-NFKDKERTTIAQQVKG  228 (272)
T ss_dssp             HHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----HT-CSCHHHHHHHHHHHTT
T ss_pred             HHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----cC-CCCHHHHHHHHHHhcC
Confidence            55555432   222346666776655555 578885 7889988887 666666653    22 4679999999999877


Q ss_pred             -----cHHHHHHHHHHHhhhc
Q 025758          224 -----SLRRAILSFETCRVQQ  239 (248)
Q Consensus       224 -----~~r~~~~~l~~~~~~~  239 (248)
                           ++|+++++++.+...+
T Consensus       229 ~~~~g~ir~l~~~l~~a~~~~  249 (272)
T 1d2n_A          229 KKVWIGIKKLLMLIEMSLQMD  249 (272)
T ss_dssp             SEEEECHHHHHHHHHHHTTSC
T ss_pred             CCccccHHHHHHHHHHHhhhc
Confidence                 9999999999887544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.73  E-value=2.5e-16  Score=128.88  Aligned_cols=196  Identities=17%  Similarity=0.280  Sum_probs=124.4

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHhh---c--------CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLVT---E--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~~---~--------~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~   72 (248)
                      ....+.+|++++|++.++..+.....   .        -..+ +++|+|||||||||+++++++.+.   .+.+.+++..
T Consensus        32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~  108 (278)
T 1iy2_A           32 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASGSD  108 (278)
T ss_dssp             CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHH
T ss_pred             cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---CCEEEecHHH
Confidence            33477899999999988877765432   1        1222 499999999999999999998652   3333333321


Q ss_pred             eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC---------
Q 025758           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------  143 (248)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------  143 (248)
                      +.                     ..   ..+ .....+...+.....         ..+.++++||++.+.         
T Consensus       109 ~~---------------------~~---~~~-~~~~~i~~~~~~~~~---------~~~~i~~iDeid~l~~~~~~~~~~  154 (278)
T 1iy2_A          109 FV---------------------EM---FVG-VGAARVRDLFETAKR---------HAPCIVFIDEIDAVGRKRGSGVGG  154 (278)
T ss_dssp             HH---------------------HS---TTT-HHHHHHHHHHHHHHT---------SCSEEEEEETHHHHHCC-------
T ss_pred             HH---------------------HH---Hhh-HHHHHHHHHHHHHHh---------cCCcEEehhhhHhhhcccccccCC
Confidence            11                     00   000 001112233332221         245799999997542         


Q ss_pred             --HHHHHHHHHHHHHhc---C--CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758          144 --REAQHSLRRTMEKYS---A--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF  213 (248)
Q Consensus       144 --~~~~~~ll~~le~~~---~--~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~  213 (248)
                        ......+.+++.+..   .  ...++.+++++..+.+++.+  |+ ..+.|+.|+.++..+++...+.  +..+++++
T Consensus       155 ~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~  232 (278)
T 1iy2_A          155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDV  232 (278)
T ss_dssp             -CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTC
T ss_pred             cchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCccc
Confidence              122333444444332   2  24567778999899999988  44 5799999999999999987664  34444444


Q ss_pred             -HHHHHHHccccH-HHHHHHHHHHhhhc
Q 025758          214 -ATRLAEKSNRSL-RRAILSFETCRVQQ  239 (248)
Q Consensus       214 -~~~l~~~~~g~~-r~~~~~l~~~~~~~  239 (248)
                       +..++..+.|+. |++.++++.+...+
T Consensus       233 ~~~~la~~~~G~~~~dl~~l~~~a~~~a  260 (278)
T 1iy2_A          233 DLALLAKRTPGFVGADLENLLNEAALLA  260 (278)
T ss_dssp             CHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence             888999998865 77777777776533

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.70  E-value=1.4e-16  Score=146.00  Aligned_cols=191  Identities=17%  Similarity=0.249  Sum_probs=125.6

Q ss_pred             CCCCCcccccccHHHHHHHHHHhh----------c-C-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758            7 YRPKTLDQVIVHQDIAQNLKKLVT----------E-Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus         7 y~p~~~~~lig~~~~~~~l~~~~~----------~-~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      ....+|+|+.|.+.+++.|+.++.          . | +.| ++||+||||||||++|+++|+++..+   .+.+++.. 
T Consensus       198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~---~~~v~~~~-  273 (806)
T 3cf2_A          198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGPE-  273 (806)
T ss_dssp             SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE---EEEEEHHH-
T ss_pred             CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe---EEEEEhHH-
Confidence            345789999999999988887763          1 1 223 49999999999999999999865221   11111110 


Q ss_pred             eeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH---------
Q 025758           74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------  144 (248)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---------  144 (248)
                                             +.....+ .....+++.+....         ...|.||+|||+|.+.+         
T Consensus       274 -----------------------l~sk~~g-ese~~lr~lF~~A~---------~~~PsIIfIDEiDal~~~r~~~~~~~  320 (806)
T 3cf2_A          274 -----------------------IMSKLAG-ESESNLRKAFEEAE---------KNAPAIIFIDELDAIAPKREKTHGEV  320 (806)
T ss_dssp             -----------------------HHSSCTT-HHHHHHHHHHHHHT---------TSCSEEEEEESGGGTCCTTTTCCCTT
T ss_pred             -----------------------hhcccch-HHHHHHHHHHHHHH---------HcCCeEEEEehhcccccccCCCCChH
Confidence                                   0000111 11223444444333         34678999999998742         


Q ss_pred             --HHHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758          145 --EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (248)
Q Consensus       145 --~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l  217 (248)
                        ...+.|+..++...  .++.+|.+||++..+.+++++  |+ ..|.++.|+.++..+|++..+.+..+. ++-.+..|
T Consensus       321 ~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~l  399 (806)
T 3cf2_A          321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQV  399 (806)
T ss_dssp             HHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHH
T ss_pred             HHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHH
Confidence              23566777777653  345788889999999999998  77 689999999999999998766543332 22337778


Q ss_pred             HHHccc-cHHHHHHHHHHH
Q 025758          218 AEKSNR-SLRRAILSFETC  235 (248)
Q Consensus       218 ~~~~~g-~~r~~~~~l~~~  235 (248)
                      +..+.| ...++.++++.+
T Consensus       400 A~~T~GfsgaDL~~Lv~eA  418 (806)
T 3cf2_A          400 ANETHGHVGADLAALCSEA  418 (806)
T ss_dssp             HHHCCSCCHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHH
Confidence            877654 344444444443

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.68  E-value=5.6e-17  Score=137.74  Aligned_cols=194  Identities=22%  Similarity=0.301  Sum_probs=121.5

Q ss_pred             ccccHHHHHHHHHHhh-------------cC--CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC
Q 025758           15 VIVHQDIAQNLKKLVT-------------EQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (248)
Q Consensus        15 lig~~~~~~~l~~~~~-------------~~--~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~   79 (248)
                      ++|++.+++.+...+.             ..  ...+++|+||||||||++|+++|..+..+   .+.+++.        
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~---~~~~~~~--------   85 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVP---FTMADAT--------   85 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHH--------
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---EEEechH--------
Confidence            5899999998888772             11  23359999999999999999999965211   1111110        


Q ss_pred             cccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH--------------
Q 025758           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------------  145 (248)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--------------  145 (248)
                                      .+...  +. ........+..+....+..+ ....+.+++|||+|.+.+.              
T Consensus        86 ----------------~l~~~--~~-~g~~~~~~~~~~~~~~~~~~-~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~  145 (363)
T 3hws_A           86 ----------------TLTEA--GY-VGEDVENIIQKLLQKCDYDV-QKAQRGIVYIDQIDKISRKSDNPSITRDVSGEG  145 (363)
T ss_dssp             ----------------HHTTC--HH-HHHHHTHHHHHHHHHTTTCH-HHHHHCEEEEECHHHHCCCSSCC---CHHHHHH
T ss_pred             ----------------Hhccc--cc-ccccHHHHHHHHHHHhhhhH-HhcCCcEEEEeChhhhcccccccccccccchHH
Confidence                            00000  00 01111112222211111100 0225679999999987755              


Q ss_pred             HHHHHHHHHHHh---------------------cCCeeEEEEecCC----------Cc----------------------
Q 025758          146 AQHSLRRTMEKY---------------------SASCRLILCCNSS----------SK----------------------  172 (248)
Q Consensus       146 ~~~~ll~~le~~---------------------~~~~~~Il~t~~~----------~~----------------------  172 (248)
                      .++.|+++|+..                     ..+..||++++..          ..                      
T Consensus       146 ~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l  225 (363)
T 3hws_A          146 VQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGEL  225 (363)
T ss_dssp             HHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHH
T ss_pred             HHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHH
Confidence            899999999821                     1233456665532          01                      


Q ss_pred             -------------ccHHHhhhh-heeeecCCCHHHHHHHHHH----HHH-------HcC--CCCCHHHHHHHHHHc---c
Q 025758          173 -------------VTEAIRSRC-LNIRINSPTEEQIVKVLEF----IAK-------KEG--LQLPSGFATRLAEKS---N  222 (248)
Q Consensus       173 -------------~~~~l~sR~-~~i~~~~~~~~~~~~il~~----~~~-------~~~--~~~~~~~~~~l~~~~---~  222 (248)
                                   +.++|.+|+ .++.|.+|+.+++.+++..    .+.       ..+  +.+++++++.|++.+   .
T Consensus       226 ~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~  305 (363)
T 3hws_A          226 LAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARK  305 (363)
T ss_dssp             HHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCc
Confidence                         678899999 4666999999999998875    222       123  357899999999753   5


Q ss_pred             ccHHHHHHHHHHHhhhc
Q 025758          223 RSLRRAILSFETCRVQQ  239 (248)
Q Consensus       223 g~~r~~~~~l~~~~~~~  239 (248)
                      +++|.+.+.++.+....
T Consensus       306 ~gaR~L~~~ie~~~~~~  322 (363)
T 3hws_A          306 TGARGLRSIVEAALLDT  322 (363)
T ss_dssp             CTTTTHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHH
Confidence            67899999888877544

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.66  E-value=1.2e-15  Score=131.23  Aligned_cols=214  Identities=14%  Similarity=0.198  Sum_probs=128.3

Q ss_pred             ccCCCCCcccccccHHHHHHHHHHh-h---cC---CCCeeEE--ECCCCCCHHHHHHHHHHHHcCC------Ccccceec
Q 025758            5 DKYRPKTLDQVIVHQDIAQNLKKLV-T---EQ---DCPHLLF--YGPPGSGKKTLIMALLRQVFGP------GAEKVKVE   69 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~~~~~l~~~~-~---~~---~~~~ill--~Gp~G~GKTtla~~ia~~l~~~------~~~~~~~~   69 (248)
                      .+|.|   ++++|.+..++.|..++ .   .+   ....+++  +||+|+|||++++.++..+...      ....+.++
T Consensus        17 ~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           17 ENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             TTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            46666   67899888777777766 3   22   3345888  9999999999999999876331      11111111


Q ss_pred             ccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------
Q 025758           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------  143 (248)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------  143 (248)
                      +.       .......+ .......++......+.............+..        .+.+.+|+|||++.++      
T Consensus        94 ~~-------~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~llvlDe~~~l~~~~~~~  157 (412)
T 1w5s_A           94 AF-------NAPNLYTI-LSLIVRQTGYPIQVRGAPALDILKALVDNLYV--------ENHYLLVILDEFQSMLSSPRIA  157 (412)
T ss_dssp             GG-------GCCSHHHH-HHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH--------HTCEEEEEEESTHHHHSCTTSC
T ss_pred             CC-------CCCCHHHH-HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEeCHHHHhhccCcc
Confidence            10       00000000 00000001111111111111112222222221        2357799999998764      


Q ss_pred             HHHHHHHHHHHHHhc-----CCeeEEEEecCCC---ccc---HHHhhhh-heeeecCCCHHHHHHHHHHHHHHcC--CCC
Q 025758          144 REAQHSLRRTMEKYS-----ASCRLILCCNSSS---KVT---EAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG--LQL  209 (248)
Q Consensus       144 ~~~~~~ll~~le~~~-----~~~~~Il~t~~~~---~~~---~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~--~~~  209 (248)
                      ......+++.++...     ....+|++++.+.   .+.   +.+.+|+ ..+.|++++.+++.+++..++...+  ..+
T Consensus       158 ~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~  237 (412)
T 1w5s_A          158 AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW  237 (412)
T ss_dssp             HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC
T ss_pred             hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC
Confidence            355566677776543     3455777776654   233   5566665 3499999999999999988776532  257


Q ss_pred             CHHHHHHHHHHcc------ccHHHHHHHHHHHhh
Q 025758          210 PSGFATRLAEKSN------RSLRRAILSFETCRV  237 (248)
Q Consensus       210 ~~~~~~~l~~~~~------g~~r~~~~~l~~~~~  237 (248)
                      +++.+..+.+.+.      |++|.++++++.+..
T Consensus       238 ~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~  271 (412)
T 1w5s_A          238 EPRHLELISDVYGEDKGGDGSARRAIVALKMACE  271 (412)
T ss_dssp             CHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence            8999999999999      999999998877653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.65  E-value=1.7e-15  Score=116.03  Aligned_cols=134  Identities=19%  Similarity=0.224  Sum_probs=83.6

Q ss_pred             cccCCCCCcccccc----cHHHHHHHHHHhhcCC---CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccc-eecccceee
Q 025758            4 VDKYRPKTLDQVIV----HQDIAQNLKKLVTEQD---CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKV-KVENKTWKI   75 (248)
Q Consensus         4 ~~ky~p~~~~~lig----~~~~~~~l~~~~~~~~---~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~-~~~~~~~~~   75 (248)
                      ++||++.+|+++++    +..+++.+..++.+-.   ...++|+||||+||||+++++++.+.......+ .+..     
T Consensus         1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~-----   75 (180)
T 3ec2_A            1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT-----   75 (180)
T ss_dssp             CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH-----
T ss_pred             CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH-----
Confidence            57999999999986    5667777777775433   234999999999999999999996631111000 0000     


Q ss_pred             ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCC-cCCCCCCeeEEEEeCCC--CCCHHHHHHHHH
Q 025758           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI-DTKGKRGFKVLVLNEVD--KLSREAQHSLRR  152 (248)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~viiiDE~d--~l~~~~~~~ll~  152 (248)
                                                     ................. .+....++++++|||++  .+++..+..++.
T Consensus        76 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~  124 (180)
T 3ec2_A           76 -------------------------------KDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISY  124 (180)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred             -------------------------------HHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence                                           00000000000000000 00001256799999997  678888889999


Q ss_pred             HHHHhc-CCeeEEEEecCCCcc
Q 025758          153 TMEKYS-ASCRLILCCNSSSKV  173 (248)
Q Consensus       153 ~le~~~-~~~~~Il~t~~~~~~  173 (248)
                      +++... .+..+|++||.+...
T Consensus       125 ll~~~~~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A          125 IITYRYNNLKSTIITTNYSLQR  146 (180)
T ss_dssp             HHHHHHHTTCEEEEECCCCSCC
T ss_pred             HHHHHHHcCCCEEEEcCCChhH
Confidence            998764 456788888887654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.64  E-value=8.9e-15  Score=119.40  Aligned_cols=193  Identities=18%  Similarity=0.177  Sum_probs=110.3

Q ss_pred             CCCCCcccccccHHHHHHHHHHhh------------cCCC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758            7 YRPKTLDQVIVHQDIAQNLKKLVT------------EQDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus         7 y~p~~~~~lig~~~~~~~l~~~~~------------~~~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      +...+|+|+.|.+.+++.|...+.            +-.. .+++|+|||||||||+++++|+.+..   +.+.+++..+
T Consensus         4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l   80 (274)
T 2x8a_A            4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVKGPEL   80 (274)
T ss_dssp             --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTT
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHH
Confidence            346789999999999998887542            1122 23999999999999999999996521   2333333211


Q ss_pred             eeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH--------
Q 025758           74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------  145 (248)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--------  145 (248)
                      .                        ....+ .....+...+.....         ..+.++++||++.+...        
T Consensus        81 ~------------------------~~~~~-~~~~~i~~vf~~a~~---------~~p~i~~~Deid~~~~~r~~~~~~~  126 (274)
T 2x8a_A           81 L------------------------NMYVG-ESERAVRQVFQRAKN---------SAPCVIFFDEVDALCPRRSDRETGA  126 (274)
T ss_dssp             C------------------------SSTTH-HHHHHHHHHHHHHHH---------TCSEEEEEETCTTTCC---------
T ss_pred             H------------------------hhhhh-HHHHHHHHHHHHHHh---------cCCCeEeeehhhhhhcccCCCcchH
Confidence            0                        00000 011122333332221         14579999999875311        


Q ss_pred             ---HHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHc-CCCCC-HHHHH
Q 025758          146 ---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKE-GLQLP-SGFAT  215 (248)
Q Consensus       146 ---~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~-~~~~~-~~~~~  215 (248)
                         ..+.++..+....  ....++.++|++..+.++++.  |+ ..|.++.|+.++..++++..+... ...++ +-.++
T Consensus       127 ~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~  206 (274)
T 2x8a_A          127 SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLE  206 (274)
T ss_dssp             CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHH
T ss_pred             HHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHH
Confidence               1234444444332  234577788999999999987  77 689999999999999999877542 22222 22366


Q ss_pred             HHHHHc---cccHHHHHHHHHHHh
Q 025758          216 RLAEKS---NRSLRRAILSFETCR  236 (248)
Q Consensus       216 ~l~~~~---~g~~r~~~~~l~~~~  236 (248)
                      .++...   +-+..++.++++.++
T Consensus       207 ~la~~~~~~g~sgadl~~l~~~a~  230 (274)
T 2x8a_A          207 AIAGDLRCDCYTGADLSALVREAS  230 (274)
T ss_dssp             HHHTCSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHhhccCCcCHHHHHHHHHHHH
Confidence            666532   223444444444443

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.64  E-value=4.1e-16  Score=143.01  Aligned_cols=178  Identities=24%  Similarity=0.292  Sum_probs=104.8

Q ss_pred             CCCCcccccccHHHHHHHHHHhh----------c-C-CC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVT----------E-Q-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~----------~-~-~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~   74 (248)
                      ...+|+++.|.+++++.|...+.          . + +. .++||+||||||||.+|+++|.++..+   .+.+.+    
T Consensus       472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~---f~~v~~----  544 (806)
T 3cf2_A          472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIKG----  544 (806)
T ss_dssp             CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE---EEECCH----
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc---eEEecc----
Confidence            34678999999999999988763          1 1 12 249999999999999999999865211   111111    


Q ss_pred             eccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH---------
Q 025758           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE---------  145 (248)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~---------  145 (248)
                                       .   .+.....+. ....+++.+.....         ..|.||+|||+|.+-+.         
T Consensus       545 -----------------~---~l~s~~vGe-se~~vr~lF~~Ar~---------~~P~IifiDEiDsl~~~R~~~~~~~~  594 (806)
T 3cf2_A          545 -----------------P---ELLTMWFGE-SEANVREIFDKARQ---------AAPCVLFFDELDSIAKARGGNIGDGG  594 (806)
T ss_dssp             -----------------H---HHHTTTCSS-CHHHHHHHHHHHHT---------TCSEEEECSCGGGCC-----------
T ss_pred             -----------------c---hhhccccch-HHHHHHHHHHHHHH---------cCCceeechhhhHHhhccCCCCCCCc
Confidence                             0   011111111 12345666665543         35779999999987421         


Q ss_pred             -----HHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025758          146 -----AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (248)
Q Consensus       146 -----~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~  215 (248)
                           ..+.|+..|+....  ++.+|.+||++..+.++++.  |+ ..|+|+.|+.++..++++..+.+..+. ++-.++
T Consensus       595 ~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~  673 (806)
T 3cf2_A          595 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLE  673 (806)
T ss_dssp             ---CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----
T ss_pred             hHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHH
Confidence                 24567777775533  34566789999999999987  88 689999999999999998776554433 122366


Q ss_pred             HHHHHccc
Q 025758          216 RLAEKSNR  223 (248)
Q Consensus       216 ~l~~~~~g  223 (248)
                      .|++.+.|
T Consensus       674 ~la~~t~g  681 (806)
T 3cf2_A          674 FLAKMTNG  681 (806)
T ss_dssp             --------
T ss_pred             HHHHhCCC
Confidence            67666543

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.63  E-value=3e-15  Score=131.33  Aligned_cols=197  Identities=11%  Similarity=0.070  Sum_probs=120.0

Q ss_pred             ccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccc
Q 025758           13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA   92 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (248)
                      ..++|++.+++.+...+..+  .+++|+||||+|||++|++++..+ +..........       .         .....
T Consensus        22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~-------~---------~~t~~   82 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMT-------R---------FSTPE   82 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECC-------T---------TCCHH
T ss_pred             hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHH-------h---------cCCHH
Confidence            34689999999888887665  379999999999999999999844 21110000000       0         00000


Q ss_pred             ceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---------CCeeE
Q 025758           93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------ASCRL  163 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---------~~~~~  163 (248)
                      +.++.       ........ -..+......   ....+.|++|||++.+++..++.|+..+++..         ....|
T Consensus        83 dL~G~-------~~~~~~~~-~g~~~~~~~g---~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~  151 (500)
T 3nbx_X           83 EVFGP-------LSIQALKD-EGRYERLTSG---YLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRL  151 (500)
T ss_dssp             HHHCC-------BC-----------CBCCTT---SGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCE
T ss_pred             HhcCc-------ccHHHHhh-chhHHhhhcc---CCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhh
Confidence            00000       00000000 0001000000   01145699999999999999999999998532         11224


Q ss_pred             -EEEecCCCc---ccHHHhhhh-heeeecCCCH-HHHHHHHHHHHH-----------------------HcCCCCCHHHH
Q 025758          164 -ILCCNSSSK---VTEAIRSRC-LNIRINSPTE-EQIVKVLEFIAK-----------------------KEGLQLPSGFA  214 (248)
Q Consensus       164 -Il~t~~~~~---~~~~l~sR~-~~i~~~~~~~-~~~~~il~~~~~-----------------------~~~~~~~~~~~  214 (248)
                       |++||....   ..+++.+|+ ..+.+++|+. ++...++.....                       -.++.++++++
T Consensus       152 iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~  231 (500)
T 3nbx_X          152 LVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVF  231 (500)
T ss_dssp             EEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHH
T ss_pred             hhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHH
Confidence             777775443   557999998 4588899987 566677764321                       13677899999


Q ss_pred             HHHHHHc----------cccHHHHHHHHHHHhhhc
Q 025758          215 TRLAEKS----------NRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       215 ~~l~~~~----------~g~~r~~~~~l~~~~~~~  239 (248)
                      +++++..          +.+.|.++.++..+...+
T Consensus       232 e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A  266 (500)
T 3nbx_X          232 ELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASA  266 (500)
T ss_dssp             HHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHH
Confidence            9998766          447888887776655433

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.62  E-value=1.6e-14  Score=119.02  Aligned_cols=152  Identities=16%  Similarity=0.181  Sum_probs=90.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (248)
                      +++|+||||||||++|+++|..+..+   .+.+++..+                        .....+. ....+.+.+.
T Consensus        38 ~lLl~GppGtGKT~la~aiA~~l~~~---~i~v~~~~l------------------------~~~~~g~-~~~~i~~~f~   89 (293)
T 3t15_A           38 ILGIWGGKGQGKSFQCELVFRKMGIN---PIMMSAGEL------------------------ESGNAGE-PAKLIRQRYR   89 (293)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTCC---CEEEEHHHH------------------------HCC---H-HHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC---EEEEeHHHh------------------------hhccCch-hHHHHHHHHH
Confidence            49999999999999999999987221   111111000                        0000111 1112333343


Q ss_pred             HHHhcCCCcCCCCCCeeEEEEeCCCCCCH-------------HHHHHHHHHHHHh-------------cCCeeEEEEecC
Q 025758          116 EMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------EAQHSLRRTMEKY-------------SASCRLILCCNS  169 (248)
Q Consensus       116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------------~~~~~ll~~le~~-------------~~~~~~Il~t~~  169 (248)
                      ......     ....+.|++|||+|.+.+             ..++.|+.+++..             ..++.+|++||+
T Consensus        90 ~a~~~~-----~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~  164 (293)
T 3t15_A           90 EAAEII-----RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND  164 (293)
T ss_dssp             HHHHHH-----TTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred             HHHHHH-----hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence            332110     023677999999987754             2347788887622             234679999999


Q ss_pred             CCcccHHHhh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccc
Q 025758          170 SSKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR  223 (248)
Q Consensus       170 ~~~~~~~l~s--R~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g  223 (248)
                      +..+.+++++  |+..+.+ .|+.++..+++...+...++.  .+.+..+.....|
T Consensus       165 ~~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~~~~~~--~~~l~~~~~~~~~  217 (293)
T 3t15_A          165 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCTGIFRTDNVP--AEDVVKIVDNFPG  217 (293)
T ss_dssp             CCC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHGGGCCC--HHHHHHHHHHSCS
T ss_pred             cccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHhccCCCCC--HHHHHHHhCCCCc
Confidence            9999999985  5543223 469999999999888776554  6666666655543

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.60  E-value=1.4e-14  Score=124.70  Aligned_cols=108  Identities=17%  Similarity=0.252  Sum_probs=78.6

Q ss_pred             CeeEEEEeCCCCCCH------------HHHHHHHHHHHHh----------cCCeeEEEEe----cCCCcccHHHhhhhhe
Q 025758          130 GFKVLVLNEVDKLSR------------EAQHSLRRTMEKY----------SASCRLILCC----NSSSKVTEAIRSRCLN  183 (248)
Q Consensus       130 ~~~viiiDE~d~l~~------------~~~~~ll~~le~~----------~~~~~~Il~t----~~~~~~~~~l~sR~~~  183 (248)
                      ...++++||+|.+..            ..|.+|++++|..          ..+..||++.    +++..+.|.|.+|+.+
T Consensus       250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i  329 (444)
T 1g41_A          250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI  329 (444)
T ss_dssp             HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCE
T ss_pred             cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccce
Confidence            456899999998742            2578999999952          2334577776    3556677999999965


Q ss_pred             -eeecCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHHc--------cccHHHHHHHHHHHhh
Q 025758          184 -IRINSPTEEQIVKVLEF-----------IAKKEG--LQLPSGFATRLAEKS--------NRSLRRAILSFETCRV  237 (248)
Q Consensus       184 -i~~~~~~~~~~~~il~~-----------~~~~~~--~~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~~  237 (248)
                       +.|++++.+++..|+..           .+..++  +.++++++..|++.+        ...+|.+-+.++.++.
T Consensus       330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~  405 (444)
T 1g41_A          330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD  405 (444)
T ss_dssp             EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred             eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence             99999999999999941           222233  458899999999753        3567777777776653

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.56  E-value=3.8e-14  Score=104.66  Aligned_cols=133  Identities=18%  Similarity=0.170  Sum_probs=85.4

Q ss_pred             ccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec
Q 025758           13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (248)
                      ++++|+....+.+...+..  ....+++|+||+|||||++|++++..........+ +++.       .           
T Consensus         1 ~~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~-------~-----------   61 (145)
T 3n70_A            1 VELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL-------T-----------   61 (145)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC-------C-----------
T ss_pred             CCceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC-------C-----------
Confidence            3678988888877776642  23345999999999999999999974321111111 1110       0           


Q ss_pred             ccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC
Q 025758           91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS  170 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~  170 (248)
                             ....   .   .....+...            ...+++|||++.+++..+..|+..++....+..+|++||.+
T Consensus        62 -------~~~~---~---~~~~~~~~a------------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~  116 (145)
T 3n70_A           62 -------PDNA---P---QLNDFIALA------------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS  116 (145)
T ss_dssp             -------TTTS---S---CHHHHHHHH------------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred             -------CCcc---h---hhhcHHHHc------------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence                   0000   0   011112211            22479999999999999999999997767678899999976


Q ss_pred             C-------cccHHHhhhh--heeeecCC
Q 025758          171 S-------KVTEAIRSRC--LNIRINSP  189 (248)
Q Consensus       171 ~-------~~~~~l~sR~--~~i~~~~~  189 (248)
                      .       .+.+.+..|+  ..|.+|++
T Consensus       117 ~~~~~~~~~~~~~L~~rl~~~~i~lPpL  144 (145)
T 3n70_A          117 LVELAASNHIIAELYYCFAMTQIACLPL  144 (145)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred             HHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence            3       3567777776  45666664

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.54  E-value=6.7e-15  Score=132.15  Aligned_cols=195  Identities=17%  Similarity=0.184  Sum_probs=115.7

Q ss_pred             ccccccHHHHHHHHHHhhcCCC-----------CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758           13 DQVIVHQDIAQNLKKLVTEQDC-----------PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~~~~-----------~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      ..++|++.+++.+...+..+..           .+++|+||||||||++|++++..+ .....  . .+      .....
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~-~r~~~--~-~~------~~~~~  364 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA-PRAVY--T-TG------KGSTA  364 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC-SCEEC--C-CT------TCSTT
T ss_pred             chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC-CCcee--c-CC------Ccccc
Confidence            3568999999988777766531           169999999999999999999843 21100  0 00      00000


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---  158 (248)
                        ..+........  . ........+     .+.            ..+..+++|||++.+++..++.|++.|++..   
T Consensus       365 --~~l~~~~~~~~--~-~g~~~~~~G-----~l~------------~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i  422 (595)
T 3f9v_A          365 --AGLTAAVVREK--G-TGEYYLEAG-----ALV------------LADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSI  422 (595)
T ss_dssp             --TTSEEECSSGG--G-TSSCSEEEC-----HHH------------HHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEE
T ss_pred             --ccccceeeecc--c-cccccccCC-----eeE------------ecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEE
Confidence              00000000000  0 000000000     000            0133599999999999999999999998642   


Q ss_pred             ----------CCeeEEEEecCCC-------------cccHHHhhhh-h-eeeecCCCHHHHHHHHHHHHHHc--------
Q 025758          159 ----------ASCRLILCCNSSS-------------KVTEAIRSRC-L-NIRINSPTEEQIVKVLEFIAKKE--------  205 (248)
Q Consensus       159 ----------~~~~~Il~t~~~~-------------~~~~~l~sR~-~-~i~~~~~~~~~~~~il~~~~~~~--------  205 (248)
                                ....+|.++|...             .+.+++.||+ . .+..+.|+.+ ...++..++...        
T Consensus       423 ~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~  501 (595)
T 3f9v_A          423 AKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNI  501 (595)
T ss_dssp             ESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSST
T ss_pred             ecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccC
Confidence                      2234777777664             7889999999 3 4444555555 555555554321        


Q ss_pred             -----------------CCCCCHHHHHHHHHH---------------ccccHHHHHHHHHHHhhhcc
Q 025758          206 -----------------GLQLPSGFATRLAEK---------------SNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       206 -----------------~~~~~~~~~~~l~~~---------------~~g~~r~~~~~l~~~~~~~~  240 (248)
                                       .-.+++++.+.|.+.               ..+++|++.+++..+...+.
T Consensus       502 l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~  568 (595)
T 3f9v_A          502 IDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAK  568 (595)
T ss_dssp             TCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHH
Confidence                             114566666777665               45688888888877665444

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.51  E-value=1.2e-14  Score=122.12  Aligned_cols=146  Identities=16%  Similarity=0.225  Sum_probs=89.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec---cCCcccccce--------eeecccceeeeCCCCcCc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID---AGSRNIDLEL--------TTLSSANHVELSPSDAGF  104 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  104 (248)
                      .+.|.|||||||||+++++++ +..+++|.+.++|+++...   .+...+...+        ...++.+++.+.....+.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~  110 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAG-FEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG  110 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence            366999999999999999998 7899999999999876311   1111110111        011222223332221111


Q ss_pred             ch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCe
Q 025758          105 QD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASC  161 (248)
Q Consensus       105 ~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~--~~~  161 (248)
                      ..   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..+..++..+.+..  .+.
T Consensus       111 ~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~  190 (359)
T 3fvq_A          111 RTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK  190 (359)
T ss_dssp             CSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence            11   12234444432     2234445553            568999999999 8999999998887665542  346


Q ss_pred             eEEEEecCCCcccHHHhhhhhe
Q 025758          162 RLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+|++||+.... ..+.+|+.+
T Consensus       191 tvi~vTHd~~ea-~~~aDri~v  211 (359)
T 3fvq_A          191 SAVFVSHDREEA-LQYADRIAV  211 (359)
T ss_dssp             EEEEECCCHHHH-HHHCSEEEE
T ss_pred             EEEEEeCCHHHH-HHHCCEEEE
Confidence            777887776544 467788743

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.51  E-value=1.6e-14  Score=121.68  Aligned_cols=145  Identities=14%  Similarity=0.276  Sum_probs=89.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeecccceeeeCCCCcCcch-
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSANHVELSPSDAGFQD-  106 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-  106 (248)
                      .+.|.||||+|||||++++++ +..+++|.+.++|.++....+.. +...+        ...++.+++.+.....+... 
T Consensus        31 ~~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~  108 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPPKY-REVGMVFQNYALYPHMTVFENIAFPLRARRISKD  108 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGG-TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHH
T ss_pred             EEEEEcCCCchHHHHHHHHHC-CCCCCccEEEECCEECCCCChhh-CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence            366999999999999999998 77899999999997654211111 10111        00111222222111111111 


Q ss_pred             --hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEE
Q 025758          107 --RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLI  164 (248)
Q Consensus       107 --~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~I  164 (248)
                        ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..+..+.+.+.+...  +..+|
T Consensus       109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi  188 (359)
T 2yyz_A          109 EVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSV  188 (359)
T ss_dssp             HTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred             HHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence              11233444332     2233445553            568999999999 89999999999999987643  46788


Q ss_pred             EEecCCCcccHHHhhhhhe
Q 025758          165 LCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       165 l~t~~~~~~~~~l~sR~~~  183 (248)
                      ++||+...+ ..+.+|+.+
T Consensus       189 ~vTHd~~~~-~~~adri~v  206 (359)
T 2yyz_A          189 YVTHDQAEA-MTMASRIAV  206 (359)
T ss_dssp             EEESCHHHH-HHHCSEEEE
T ss_pred             EEcCCHHHH-HHhCCEEEE
Confidence            888775544 367777643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.49  E-value=1.7e-14  Score=121.94  Aligned_cols=134  Identities=15%  Similarity=0.241  Sum_probs=88.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHH------
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV------  109 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  109 (248)
                      .+.|.||||||||||++++++ +..+++|.+.++|.++....+...            .+++.+.+....+..+      
T Consensus        31 ~~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~~~~~~~~~r------------~ig~VfQ~~~l~p~ltV~eni~   97 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPAER------------GVGMVFQSYALYPHLSVAENMS   97 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTCCGGGS------------CEEEECTTCCCCTTSCHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHHc-CCCCCCeEEEECCEECCCCCHHHC------------CEEEEecCCcCCCCCCHHHHHH
Confidence            366999999999999999998 789999999999986642222111            1222222222221111      


Q ss_pred             ----------------HHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHH
Q 025758          110 ----------------VQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (248)
Q Consensus       110 ----------------~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le  155 (248)
                                      +.+.++.+     ...++..+|+            ..+|+++++||| ..||+..+..+++.|.
T Consensus        98 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~  177 (381)
T 3rlf_A           98 FGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS  177 (381)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence                            22222221     1223444553            338999999999 8999999999999998


Q ss_pred             HhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          156 KYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       156 ~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +...  +..+|++||+...+. .+.+|+.+
T Consensus       178 ~l~~~~g~tii~vTHd~~ea~-~~aDri~v  206 (381)
T 3rlf_A          178 RLHKRLGRTMIYVTHDQVEAM-TLADKIVV  206 (381)
T ss_dssp             HHHHHHCCEEEEECSCHHHHH-HHCSEEEE
T ss_pred             HHHHhCCCEEEEEECCHHHHH-HhCCEEEE
Confidence            8743  467788877765544 67788743

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.49  E-value=3.5e-14  Score=119.67  Aligned_cols=132  Identities=20%  Similarity=0.313  Sum_probs=86.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh---------
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---------  107 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  107 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.++|.++....+..            ..+++.+.+....+.         
T Consensus        32 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~------------r~ig~v~Q~~~l~~~ltv~eni~~   98 (362)
T 2it1_A           32 MALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTELPPKD------------RNVGLVFQNWALYPHMTVYKNIAF   98 (362)
T ss_dssp             EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGG------------TTEEEECTTCCCCTTSCHHHHHHH
T ss_pred             EEEECCCCchHHHHHHHHhc-CCCCCceEEEECCEECCcCCHhH------------CcEEEEecCcccCCCCCHHHHHHH
Confidence            66999999999999999998 77899999999997654211111            112222222211111         


Q ss_pred             -------------HHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758          108 -------------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (248)
Q Consensus       108 -------------~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~  156 (248)
                                   ..+.+.++.+.     ...+..+|+            ..+|+++++||| ..||+..+..+.+.|.+
T Consensus        99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  178 (362)
T 2it1_A           99 PLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR  178 (362)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence                         11222232221     122334442            568999999999 89999999999999987


Q ss_pred             hcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758          157 YSA--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       157 ~~~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      ...  +..+|++||+...+ ..+.+|+.
T Consensus       179 l~~~~g~tvi~vTHd~~~a-~~~adri~  205 (362)
T 2it1_A          179 LQKELGITTVYVTHDQAEA-LAMADRIA  205 (362)
T ss_dssp             HHHHHTCEEEEEESCHHHH-HHHCSEEE
T ss_pred             HHHhCCCEEEEECCCHHHH-HHhCCEEE
Confidence            743  46788888876544 36677764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.49  E-value=5.2e-14  Score=119.21  Aligned_cols=133  Identities=16%  Similarity=0.265  Sum_probs=87.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee------ccCCcccccceeeecccceeeeCCCCcCcchh---
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI------DAGSRNIDLELTTLSSANHVELSPSDAGFQDR---  107 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  107 (248)
                      +.|.||||+|||||++++++ +..+.+|.+.++|.++..      ..+..            ..+++.+.+....+.   
T Consensus        32 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~~~~~~~~~~~~~------------r~ig~v~Q~~~l~~~ltv   98 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKGIFVPPKD------------RDIAMVFQSYALYPHMTV   98 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEEEGGGTEECCGGG------------SSEEEECSCCCCCTTSCH
T ss_pred             EEEECCCCcHHHHHHHHHHc-CCCCCccEEEECCEECccccccccCCHhH------------CCEEEEeCCCccCCCCCH
Confidence            66999999999999999998 778999999999987653      11111            112222222211111   


Q ss_pred             -------------------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHH
Q 025758          108 -------------------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSL  150 (248)
Q Consensus       108 -------------------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~l  150 (248)
                                         ..+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..+..+
T Consensus        99 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l  178 (372)
T 1g29_1           99 YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM  178 (372)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence                               1223333322     1223345553            448999999999 89999999999


Q ss_pred             HHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          151 RRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       151 l~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+.|.+...  +..+|++||+...+ ..+.+|+.+
T Consensus       179 ~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~v  212 (372)
T 1g29_1          179 RAELKKLQRQLGVTTIYVTHDQVEA-MTMGDRIAV  212 (372)
T ss_dssp             HHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEE
T ss_pred             HHHHHHHHHhcCCEEEEECCCHHHH-HHhCCEEEE
Confidence            999987643  46788888875543 467777643

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.49  E-value=1.7e-14  Score=115.36  Aligned_cols=147  Identities=12%  Similarity=0.201  Sum_probs=86.9

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--e------eecccceeeeCCCCcCcc-
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--T------TLSSANHVELSPSDAGFQ-  105 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~-  105 (248)
                      ..+.|.||||+||||+++++++ +..+.+|.+.++|.++...... .....+  +      ..++.+++.+.....+.. 
T Consensus        25 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~-~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~  102 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAG-IVKPDRGEVRLNGADITPLPPE-RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVE  102 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCTT-TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCchh-hCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCch
Confidence            4477999999999999999998 7788999999998765311110 000000  0      001111121211111100 


Q ss_pred             hhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEE
Q 025758          106 DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL  165 (248)
Q Consensus       106 ~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il  165 (248)
                      ....+.+.++.+.     ...+..+|+            ..+|+++++||| ..||+..+..+.+++.+...  +..+|+
T Consensus       103 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~  182 (240)
T 2onk_A          103 RDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH  182 (240)
T ss_dssp             HHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            1112233333221     112223442            568999999999 89999999999999988743  467788


Q ss_pred             EecCCCcccHHHhhhhhee
Q 025758          166 CCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       166 ~t~~~~~~~~~l~sR~~~i  184 (248)
                      +||+... ...+.+|+.++
T Consensus       183 vtHd~~~-~~~~~d~i~~l  200 (240)
T 2onk_A          183 VTHDLIE-AAMLADEVAVM  200 (240)
T ss_dssp             EESCHHH-HHHHCSEEEEE
T ss_pred             EeCCHHH-HHHhCCEEEEE
Confidence            8777544 34666776443

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.49  E-value=8.9e-14  Score=110.90  Aligned_cols=146  Identities=15%  Similarity=0.234  Sum_probs=86.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-----cccccee--------eecccceeeeC--CC
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-----NIDLELT--------TLSSANHVELS--PS  100 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------~~~~~~~~~~~--~~  100 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+..     .....+.        ..++.+++.+.  ..
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~  111 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK  111 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred             EEEEECCCCCcHHHHHHHHhc-CCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence            367999999999999999998 78899999999986543111100     0000000        00111111110  00


Q ss_pred             -CcCcchh---HHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh
Q 025758          101 -DAGFQDR---YVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY  157 (248)
Q Consensus       101 -~~~~~~~---~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~  157 (248)
                       .......   ..+.+.++.+.      ...+..+|+            ..+|+++|+||| ..||+.....+++++.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l  191 (235)
T 3tif_A          112 YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL  191 (235)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence             0011111   12223333221      122334552            568999999999 899999999999999887


Q ss_pred             cC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          158 SA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       158 ~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..  +..+|++||+.. +. .+.+|+.++
T Consensus       192 ~~~~g~tvi~vtHd~~-~~-~~~d~i~~l  218 (235)
T 3tif_A          192 NEEDGKTVVVVTHDIN-VA-RFGERIIYL  218 (235)
T ss_dssp             HHHHCCEEEEECSCHH-HH-TTSSEEEEE
T ss_pred             HHHcCCEEEEEcCCHH-HH-HhCCEEEEE
Confidence            43  567888888875 43 567776443

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.48  E-value=1e-13  Score=102.07  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=81.6

Q ss_pred             cccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecc
Q 025758           14 QVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (248)
                      +++|+....+.+.+.+..  ....+++|+||+|||||++|++++... .   ..                          
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~-~---~~--------------------------   54 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG-T---PW--------------------------   54 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT-S---CE--------------------------
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC-C---Ce--------------------------
Confidence            578988888877776643  334569999999999999999998732 1   11                          


Q ss_pred             cceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-CCeeEEEEecCC
Q 025758           92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASCRLILCCNSS  170 (248)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-~~~~~Il~t~~~  170 (248)
                         +.+.+....  ... ....+.   . .        ...+++|||++.+++..+..|++.+++.. .+..+|++||..
T Consensus        55 ---~~~~~~~~~--~~~-~~~~~~---~-a--------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~  116 (143)
T 3co5_A           55 ---VSPARVEYL--IDM-PMELLQ---K-A--------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYA  116 (143)
T ss_dssp             ---ECCSSTTHH--HHC-HHHHHH---H-T--------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             ---EEechhhCC--hHh-hhhHHH---h-C--------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence               111111100  000 111111   1 1        23489999999999999999999999763 457889988865


Q ss_pred             C-c----ccHHHhhhh--heeeecCC
Q 025758          171 S-K----VTEAIRSRC--LNIRINSP  189 (248)
Q Consensus       171 ~-~----~~~~l~sR~--~~i~~~~~  189 (248)
                      . .    +.+.+..|+  ..|.+|++
T Consensus       117 ~~~~~~~~~~~L~~rl~~~~i~lPpL  142 (143)
T 3co5_A          117 AGSDGISCEEKLAGLFSESVVRIPPL  142 (143)
T ss_dssp             TTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred             HHHHHhCccHHHHHHhcCcEEeCCCC
Confidence            3 2    445677776  35666654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.48  E-value=1.2e-13  Score=102.34  Aligned_cols=122  Identities=19%  Similarity=0.345  Sum_probs=76.6

Q ss_pred             CCCCcccccc--cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758            8 RPKTLDQVIV--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (248)
Q Consensus         8 ~p~~~~~lig--~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (248)
                      ...++++++.  +..+...+..+    ....++|+||+|+||||+++++++.+.......+.+++               
T Consensus        12 ~~~~~~~f~~g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~---------------   72 (149)
T 2kjq_A           12 DYPSFDKFLGTENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA---------------   72 (149)
T ss_dssp             CCCCCCCCCSCCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET---------------
T ss_pred             CccchhhcCcCccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH---------------
Confidence            3445566543  44555555555    33458999999999999999999966321100111111               


Q ss_pred             eeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC-ee-E
Q 025758           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS-CR-L  163 (248)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~-~~-~  163 (248)
                                    ......          .+          ..++++++|||++.++...+..++++++..... .. +
T Consensus        73 --------------~~~~~~----------~~----------~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~i  118 (149)
T 2kjq_A           73 --------------ASMPLT----------DA----------AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFL  118 (149)
T ss_dssp             --------------TTSCCC----------GG----------GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEE
T ss_pred             --------------HHhhHH----------HH----------HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEE
Confidence                          110000          00          125679999999988877788999999875433 44 7


Q ss_pred             EEEecCCCc---ccHHHhhhhh
Q 025758          164 ILCCNSSSK---VTEAIRSRCL  182 (248)
Q Consensus       164 Il~t~~~~~---~~~~l~sR~~  182 (248)
                      |++++.+..   ..++++||+.
T Consensus       119 iits~~~p~~l~~~~~L~SRl~  140 (149)
T 2kjq_A          119 LLGSEYTPQQLVIREDLRTRMA  140 (149)
T ss_dssp             EEEESSCTTTSSCCHHHHHHGG
T ss_pred             EEECCCCHHHccccHHHHHHHh
Confidence            778875542   2289999984

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.46  E-value=8.6e-14  Score=116.92  Aligned_cols=144  Identities=17%  Similarity=0.263  Sum_probs=85.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee--------ecccceeeeCCCCcCcch--
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT--------LSSANHVELSPSDAGFQD--  106 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--  106 (248)
                      +.|.||||+|||||++++++ +..+.+|.+.++|..+....+.. +...+..        .++.+++.+.....+...  
T Consensus        44 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~-r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~  121 (355)
T 1z47_A           44 VGLLGPSGSGKTTILRLIAG-LERPTKGDVWIGGKRVTDLPPQK-RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE  121 (355)
T ss_dssp             EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTCCGGG-SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECCcCChhh-CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            66999999999999999998 77899999999997654211111 1010000        011111111000001010  


Q ss_pred             -hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEE
Q 025758          107 -RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL  165 (248)
Q Consensus       107 -~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il  165 (248)
                       ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..+..+.+.|.+...  +..+|+
T Consensus       122 ~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~  201 (355)
T 1z47_A          122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF  201 (355)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence             11222333322     1223334553            568999999999 89999999999999987643  456777


Q ss_pred             EecCCCcccHHHhhhhhe
Q 025758          166 CCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       166 ~t~~~~~~~~~l~sR~~~  183 (248)
                      +|++...+ ..+.+|+.+
T Consensus       202 vTHd~~~a-~~~adri~v  218 (355)
T 1z47_A          202 VTHDQEEA-LEVADRVLV  218 (355)
T ss_dssp             ECSCHHHH-HHHCSEEEE
T ss_pred             ECCCHHHH-HHhCCEEEE
Confidence            77775443 467777643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.46  E-value=2.6e-14  Score=115.33  Aligned_cols=134  Identities=17%  Similarity=0.224  Sum_probs=83.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh---------
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---------  107 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  107 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.++|.++.......           ...+++.+........         
T Consensus        44 ~~l~G~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~~~~~~~-----------~~~i~~v~q~~~l~~~ltv~enl~~  111 (256)
T 1vpl_A           44 FGLIGPNGAGKTTTLRIIST-LIKPSSGIVTVFGKNVVEEPHEV-----------RKLISYLPEEAGAYRNMQGIEYLRF  111 (256)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEETTTCHHHH-----------HTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCccHHHH-----------hhcEEEEcCCCCCCCCCcHHHHHHH
Confidence            66999999999999999998 77889999999886543100000           0012222221111111         


Q ss_pred             -------------HHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758          108 -------------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (248)
Q Consensus       108 -------------~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~  156 (248)
                                   ..+.+.++.+.     ...+..+|+            ..+|+++++||| ..||+..+..+.+++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~  191 (256)
T 1vpl_A          112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ  191 (256)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence                         11223333221     122234442            568999999999 89999999999999988


Q ss_pred             hcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          157 YSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       157 ~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ... +..+|++|++... ...+.+|+..
T Consensus       192 l~~~g~tiiivtHd~~~-~~~~~d~v~~  218 (256)
T 1vpl_A          192 ASQEGLTILVSSHNMLE-VEFLCDRIAL  218 (256)
T ss_dssp             HHHTTCEEEEEECCHHH-HTTTCSEEEE
T ss_pred             HHhCCCEEEEEcCCHHH-HHHHCCEEEE
Confidence            743 4567777776543 3355666643

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.46  E-value=5.6e-14  Score=118.85  Aligned_cols=145  Identities=14%  Similarity=0.226  Sum_probs=91.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeecccceeeeCCCCcCcch-
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSANHVELSPSDAGFQD-  106 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-  106 (248)
                      .+.|.||||+|||||++++++ +..+.+|.+.++|..+....+.. +...+        ...++.+++.+.....+... 
T Consensus        39 ~~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~  116 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPPKD-RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD  116 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGG-GTEEEEEC------CCCHHHHHHTTCC--CCCHH
T ss_pred             EEEEECCCCChHHHHHHHHHc-CCCCCceEEEECCEECCCCChhh-CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence            366999999999999999998 78899999999997654211111 11111        11122223333221112111 


Q ss_pred             --hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEE
Q 025758          107 --RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLI  164 (248)
Q Consensus       107 --~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~I  164 (248)
                        ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..+..+.+.|.+...  +..+|
T Consensus       117 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi  196 (372)
T 1v43_A          117 EIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI  196 (372)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence              12234444432     2334556664            458999999999 89999999999999987743  46788


Q ss_pred             EEecCCCcccHHHhhhhhe
Q 025758          165 LCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       165 l~t~~~~~~~~~l~sR~~~  183 (248)
                      ++||+.... ..+.+|+.+
T Consensus       197 ~vTHd~~~a-~~~adri~v  214 (372)
T 1v43_A          197 YVTHDQVEA-MTMGDRIAV  214 (372)
T ss_dssp             EEESCHHHH-HHHCSEEEE
T ss_pred             EEeCCHHHH-HHhCCEEEE
Confidence            888876544 367777643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.46  E-value=5.9e-14  Score=118.01  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=88.5

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh---------
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---------  107 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  107 (248)
                      +.|.||||+|||||++++++ +..+.+|.+.++|.++....+....       .....+++.+........         
T Consensus        57 ~~IiGpnGaGKSTLlr~i~G-L~~p~~G~I~i~G~~i~~~~~~~~~-------~~r~~Ig~v~Q~~~l~~~~TV~env~~  128 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNL-LERPTEGSVLVDGQELTTLSESELT-------KARRQIGMIFQHFNLLSSRTVFGNVAL  128 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECSSCCHHHHH-------HHHTTEEEECSSCCCCTTSCHHHHHHH
T ss_pred             EEEEcCCCchHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHH-------HHhCcEEEEeCCCccCCCCCHHHHHHH
Confidence            56999999999999999998 7899999999999766421110000       000112222222111111         


Q ss_pred             -------------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758          108 -------------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (248)
Q Consensus       108 -------------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~  156 (248)
                                   ..+.+.++.+     ...++..+|+            ..+|+++|+||| ..||+..+..+++++.+
T Consensus       129 ~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~  208 (366)
T 3tui_C          129 PLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD  208 (366)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence                         1223333332     2234445553            568999999999 89999999999999988


Q ss_pred             hcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          157 YSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       157 ~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ...  +..+|++||+.. ....+.+|+.+
T Consensus       209 l~~~~g~Tii~vTHdl~-~~~~~aDrv~v  236 (366)
T 3tui_C          209 INRRLGLTILLITHEMD-VVKRICDCVAV  236 (366)
T ss_dssp             HHHHSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred             HHHhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence            743  467788877754 44577777743

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.45  E-value=5e-14  Score=118.21  Aligned_cols=134  Identities=13%  Similarity=0.255  Sum_probs=86.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchh--------
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--------  107 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  107 (248)
                      .+.|.||||+|||||++++++ +..+.+|.+.++|..+....+. .           ..+++.+.+....+.        
T Consensus        28 ~~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~~~~~~-~-----------r~ig~v~Q~~~l~~~ltv~enl~   94 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDVTDLSPE-K-----------HDIAFVYQNYSLFPHMNVKKNLE   94 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHT-SSCCSEEEEEETTEECTTSCHH-H-----------HTCEEECTTCCCCTTSCHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHc-CCCCCCcEEEECCEECCCCchh-h-----------CcEEEEecCcccCCCCCHHHHHH
Confidence            366999999999999999998 7789999999999765311110 0           012222222111111        


Q ss_pred             -----------HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758          108 -----------YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus       108 -----------~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~  158 (248)
                                 ..+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..+..+.+.|.+..
T Consensus        95 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~  174 (348)
T 3d31_A           95 FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH  174 (348)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence                       2233333322     1222334442            558999999999 8999999999999998874


Q ss_pred             C--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          159 A--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       159 ~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .  +..+|++||+.... ..+.+|+.+
T Consensus       175 ~~~g~tii~vTHd~~~~-~~~adri~v  200 (348)
T 3d31_A          175 KKNKLTVLHITHDQTEA-RIMADRIAV  200 (348)
T ss_dssp             HHTTCEEEEEESCHHHH-HHHCSEEEE
T ss_pred             HhcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence            3  46788888775544 466777643

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.45  E-value=1.8e-13  Score=110.70  Aligned_cols=145  Identities=16%  Similarity=0.288  Sum_probs=84.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccceee--------ecccceeeeCC-CCcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLELTT--------LSSANHVELSP-SDAG  103 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------~~~~~~~~~~~-~~~~  103 (248)
                      +.|.||||+|||||++++++ +..+..|.+.++|.++. .....    .....+..        .++.+++.+.. ...+
T Consensus        53 ~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~i~-~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~  130 (263)
T 2olj_A           53 VVVIGPSGSGKSTFLRCLNL-LEDFDEGEIIIDGINLK-AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK  130 (263)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEESS-STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC
T ss_pred             EEEEcCCCCcHHHHHHHHHc-CCCCCCcEEEECCEECC-CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC
Confidence            66999999999999999998 77889999999987653 11100    00000000        01111111100 0001


Q ss_pred             cch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-Ce
Q 025758          104 FQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SC  161 (248)
Q Consensus       104 ~~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~  161 (248)
                      ...   ...+.+.++.+     ....+..+|+            ..+|+++|+||| ..||+..+..+++++.+... +.
T Consensus       131 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~  210 (263)
T 2olj_A          131 WPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGM  210 (263)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence            010   11122333322     1112234442            558999999999 89999999999999988743 45


Q ss_pred             eEEEEecCCCcccHHHhhhhhee
Q 025758          162 RLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+|++|++. .....+.+|+.++
T Consensus       211 tvi~vtHd~-~~~~~~~d~v~~l  232 (263)
T 2olj_A          211 TMVVVTHEM-GFAREVGDRVLFM  232 (263)
T ss_dssp             EEEEECSCH-HHHHHHCSEEEEE
T ss_pred             EEEEEcCCH-HHHHHhCCEEEEE
Confidence            667776664 3445677776443

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.45  E-value=7.2e-14  Score=110.66  Aligned_cols=139  Identities=17%  Similarity=0.200  Sum_probs=82.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcch----------
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD----------  106 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  106 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.++|.++............      ...+++.+.......          
T Consensus        33 ~~iiG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~------~~~i~~v~q~~~l~~~~tv~e~l~~  105 (224)
T 2pcj_A           33 VSIIGASGSGKSTLLYILGL-LDAPTEGKVFLEGKEVDYTNEKELSLLR------NRKLGFVFQFHYLIPELTALENVIV  105 (224)
T ss_dssp             EEEEECTTSCHHHHHHHHTT-SSCCSEEEEEETTEECCSSCHHHHHHHH------HHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCCCCHHHHHHHH------hCcEEEEecCcccCCCCCHHHHHHh
Confidence            66999999999999999998 7788999999988765311100000000      001222221111111          


Q ss_pred             ------------hHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHH
Q 025758          107 ------------RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (248)
Q Consensus       107 ------------~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~  156 (248)
                                  ...+.+.++.+.     ...+..+|+            ..+|+++++||| ..||+.....+.+++.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  185 (224)
T 2pcj_A          106 PMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK  185 (224)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence                        111222232221     112223442            568999999999 89999999999999988


Q ss_pred             hcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          157 YSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       157 ~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ... +..+|++||+... . .+.+|+..+
T Consensus       186 l~~~g~tvi~vtHd~~~-~-~~~d~v~~l  212 (224)
T 2pcj_A          186 INEGGTSIVMVTHEREL-A-ELTHRTLEM  212 (224)
T ss_dssp             HHHTTCEEEEECSCHHH-H-TTSSEEEEE
T ss_pred             HHHCCCEEEEEcCCHHH-H-HhCCEEEEE
Confidence            743 4567777777543 3 456665443

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.44  E-value=1.2e-13  Score=111.53  Aligned_cols=155  Identities=15%  Similarity=0.168  Sum_probs=90.7

Q ss_pred             HHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--c--cccce------eeecccce
Q 025758           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--N--IDLEL------TTLSSANH   94 (248)
Q Consensus        25 l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~------~~~~~~~~   94 (248)
                      +...+..|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+..  .  ..+-.      ...++.++
T Consensus        26 vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en  102 (257)
T 1g6h_A           26 VSISVNKGD--VTLIIGPNGSGKSTLINVITG-FLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLEN  102 (257)
T ss_dssp             ECCEEETTC--EEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHH
T ss_pred             eEEEEeCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHH
Confidence            333344443  366999999999999999998 77889999999987553110000  0  00000      01112222


Q ss_pred             eeeCCCC--cC-----------cc---hhHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-C
Q 025758           95 VELSPSD--AG-----------FQ---DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-D  140 (248)
Q Consensus        95 ~~~~~~~--~~-----------~~---~~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d  140 (248)
                      +.+....  .+           ..   ....+.+.++.+.     ...+..+|+            ..+|+++++||| .
T Consensus       103 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts  182 (257)
T 1g6h_A          103 LLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA  182 (257)
T ss_dssp             HHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTT
T ss_pred             HHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            2221111  01           01   1122333343321     112224442            458999999999 8


Q ss_pred             CCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhe
Q 025758          141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       141 ~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .||+.....+.+++.+... +..+|++||+...+ ..+.+|+.+
T Consensus       183 ~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~-~~~~d~v~~  225 (257)
T 1g6h_A          183 GVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV-LNYIDHLYV  225 (257)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT-GGGCSEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH-HHhCCEEEE
Confidence            9999999999999988744 45677777776554 466777643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.44  E-value=6.8e-14  Score=113.50  Aligned_cols=158  Identities=15%  Similarity=0.202  Sum_probs=89.7

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--------eeecccc
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--------TTLSSAN   93 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~   93 (248)
                      +.+...+..|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++....+.. .....+        ...++.+
T Consensus        28 ~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e  104 (266)
T 4g1u_C           28 NDVSLHIASGE--MVAIIGPNGAGKSTLLRLLTG-YLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE  104 (266)
T ss_dssp             EEEEEEEETTC--EEEEECCTTSCHHHHHHHHTS-SSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred             EeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence            33333444443  356999999999999999998 77899999999997653111100 000000        0001111


Q ss_pred             eeeeCCCCc-CcchhHHHHHHHHHHH-----hcCCCcCCC------------CC------CeeEEEEeCC-CCCCHHHHH
Q 025758           94 HVELSPSDA-GFQDRYVVQEVIKEMA-----KNRPIDTKG------------KR------GFKVLVLNEV-DKLSREAQH  148 (248)
Q Consensus        94 ~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~------------~~------~~~viiiDE~-d~l~~~~~~  148 (248)
                      ++.+..... .......+.+.++.+.     ...+..+|+            ..      +|+++|+||| ..||+..+.
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~  184 (266)
T 4g1u_C          105 VIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ  184 (266)
T ss_dssp             HHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred             HHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHH
Confidence            111111000 0111122333333321     112223332            33      8999999999 899999999


Q ss_pred             HHHHHHHHhcCC--eeEEEEecCCCcccHHHhhhhhee
Q 025758          149 SLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       149 ~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+++++.+....  ..+|++||+.. ....+.+|+.++
T Consensus       185 ~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl  221 (266)
T 4g1u_C          185 HTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLL  221 (266)
T ss_dssp             HHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEE
Confidence            999999887432  46777766654 444677887443

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.43  E-value=1.7e-13  Score=109.96  Aligned_cols=141  Identities=21%  Similarity=0.275  Sum_probs=84.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-cccccee-------eecccceeeeCCCCcCcchhH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELT-------TLSSANHVELSPSDAGFQDRY  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  108 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.++|.++....... .....+.       ..++.+++.+...  . ....
T Consensus        38 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~--~-~~~~  113 (247)
T 2ff7_A           38 IGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--G-MSVE  113 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCT--T-CCHH
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCC--C-CCHH
Confidence            66999999999999999998 77889999999986543110000 0000000       0011122222111  0 1111


Q ss_pred             HHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          109 VVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       109 ~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      .+.+.++.     +....           ...+|+            ..+|+++++||| ..||+.....+.+++.+...
T Consensus       114 ~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~  193 (247)
T 2ff7_A          114 KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK  193 (247)
T ss_dssp             HHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC
Confidence            22222221     22222           134442            558999999999 89999999999999988755


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhe
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +..+|++|++...+ . ..+|+.+
T Consensus       194 g~tviivtH~~~~~-~-~~d~v~~  215 (247)
T 2ff7_A          194 GRTVIIIAHRLSTV-K-NADRIIV  215 (247)
T ss_dssp             TSEEEEECSSGGGG-T-TSSEEEE
T ss_pred             CCEEEEEeCCHHHH-H-hCCEEEE
Confidence            56788888876644 2 3666643

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.43  E-value=1.2e-13  Score=110.50  Aligned_cols=146  Identities=12%  Similarity=0.133  Sum_probs=87.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--ccccce--e------eecccceeeeCC-CCcCcc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLEL--T------TLSSANHVELSP-SDAGFQ  105 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~------~~~~~~~~~~~~-~~~~~~  105 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.++|.++....+..  .....+  +      ..++.+++.+.. ......
T Consensus        35 ~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~  113 (240)
T 1ji0_A           35 VTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE  113 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSS
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHH
Confidence            66999999999999999998 77889999999987653111100  000000  0      011112222211 000001


Q ss_pred             -hhHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCeeEE
Q 025758          106 -DRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLI  164 (248)
Q Consensus       106 -~~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~-~~~~~I  164 (248)
                       ....+.+.++.+      ....+..+|+            ..+|+++++||| ..||+.....+++++.+.. .+..+|
T Consensus       114 ~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi  193 (240)
T 1ji0_A          114 GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL  193 (240)
T ss_dssp             HHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence             112233333322      1223334553            568999999999 8999999999999998875 345677


Q ss_pred             EEecCCCcccHHHhhhhhee
Q 025758          165 LCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       165 l~t~~~~~~~~~l~sR~~~i  184 (248)
                      ++||+... ...+.+|+..+
T Consensus       194 ~vtHd~~~-~~~~~d~v~~l  212 (240)
T 1ji0_A          194 LVEQNALG-ALKVAHYGYVL  212 (240)
T ss_dssp             EEESCHHH-HHHHCSEEEEE
T ss_pred             EEecCHHH-HHHhCCEEEEE
Confidence            88777543 34666776443

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.43  E-value=2.6e-13  Score=110.51  Aligned_cols=155  Identities=14%  Similarity=0.170  Sum_probs=90.2

Q ss_pred             HHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC---Ccccccce--e-------eecccc
Q 025758           26 KKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLEL--T-------TLSSAN   93 (248)
Q Consensus        26 ~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~-------~~~~~~   93 (248)
                      ...+.+|.  .+.|.||||+||||+++++++ +..+.+|.+.++|.++.....   .......+  +       ..++.+
T Consensus        28 sl~i~~Ge--~~~iiGpnGsGKSTLl~~l~G-l~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e  104 (275)
T 3gfo_A           28 NMNIKRGE--VTAILGGNGVGKSTLFQNFNG-ILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ  104 (275)
T ss_dssp             EEEEETTS--EEEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHH
T ss_pred             EEEEcCCC--EEEEECCCCCCHHHHHHHHHc-CCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHH
Confidence            33344443  366999999999999999998 778999999999976521000   00000000  0       001111


Q ss_pred             eeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHH
Q 025758           94 HVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (248)
Q Consensus        94 ~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~  152 (248)
                      ++.+.....+....   ..+.+.++.+     ....+..+|+            ..+|+++|+||| ..||+..+..+++
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~  184 (275)
T 3gfo_A          105 DVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK  184 (275)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence            11111111111111   1122233221     1122334442            558999999999 8999999999999


Q ss_pred             HHHHhc-C-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          153 TMEKYS-A-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       153 ~le~~~-~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ++.+.. . +..+|++|++...+. .+.+|+.++
T Consensus       185 ~l~~l~~~~g~tvi~vtHdl~~~~-~~~drv~~l  217 (275)
T 3gfo_A          185 LLVEMQKELGITIIIATHDIDIVP-LYCDNVFVM  217 (275)
T ss_dssp             HHHHHHHHHCCEEEEEESCCSSGG-GGCSEEEEE
T ss_pred             HHHHHHhhCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence            998875 3 467788888766554 677887443

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.42  E-value=5.9e-14  Score=118.09  Aligned_cols=145  Identities=17%  Similarity=0.297  Sum_probs=89.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec----cCCcccccceee--------ecccceeeeCCCCcCc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID----AGSRNIDLELTT--------LSSANHVELSPSDAGF  104 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  104 (248)
                      +.|.||||+|||||++++++ +..+++|.+.++|.++...    .+...+...+..        .++.+++.+.....+.
T Consensus        34 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~  112 (353)
T 1oxx_K           34 FGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM  112 (353)
T ss_dssp             EEEECSCHHHHHHHHHHHHT-SSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence            66999999999999999998 7889999999999876531    111111111100        1111222221111111


Q ss_pred             ch---hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--Ce
Q 025758          105 QD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SC  161 (248)
Q Consensus       105 ~~---~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~  161 (248)
                      ..   ...+.+.++.+     ....+..+|+            ..+|+++++||| ..||+..+..+.+.|.+...  +.
T Consensus       113 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~  192 (353)
T 1oxx_K          113 SKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV  192 (353)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            11   11233333332     1223445553            568999999999 89999999999999987643  46


Q ss_pred             eEEEEecCCCcccHHHhhhhhe
Q 025758          162 RLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+|++||+...+ ..+.+|+.+
T Consensus       193 tvi~vTHd~~~~-~~~adri~v  213 (353)
T 1oxx_K          193 TLLVVSHDPADI-FAIADRVGV  213 (353)
T ss_dssp             EEEEEESCHHHH-HHHCSEEEE
T ss_pred             EEEEEeCCHHHH-HHhCCEEEE
Confidence            788888876544 466777643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.42  E-value=2.5e-13  Score=106.63  Aligned_cols=140  Identities=12%  Similarity=0.176  Sum_probs=82.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeecccceeeeCCCCcC-cchh
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSANHVELSPSDAG-FQDR  107 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~  107 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.++|.++.   . ......+        ...++.+++.+.....+ ....
T Consensus        38 ~~iiG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~---~-~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~  112 (214)
T 1sgw_A           38 VNFHGPNGIGKTTLLKTIST-YLKPLKGEIIYNGVPIT---K-VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK  112 (214)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGG---G-GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCH
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEhh---h-hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHH
Confidence            56999999999999999998 77889999999886542   0 0000000        00011111111000000 0011


Q ss_pred             HHHHHHHHHHH----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecC
Q 025758          108 YVVQEVIKEMA----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNS  169 (248)
Q Consensus       108 ~~~~~~~~~~~----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~  169 (248)
                      ..+.+.++.+.    ...+..+|+            ..+|+++++||| ..||+.....+.+.+.+... +..+|++|++
T Consensus       113 ~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd  192 (214)
T 1sgw_A          113 NEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE  192 (214)
T ss_dssp             HHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred             HHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            22333343332    111223332            558999999999 89999999999999987643 4567778877


Q ss_pred             CCcccHHHhhhhh
Q 025758          170 SSKVTEAIRSRCL  182 (248)
Q Consensus       170 ~~~~~~~l~sR~~  182 (248)
                      ...+ ..+.+|+.
T Consensus       193 ~~~~-~~~~d~v~  204 (214)
T 1sgw_A          193 ELSY-CDVNENLH  204 (214)
T ss_dssp             CCTT-SSEEEEGG
T ss_pred             HHHH-HHhCCEEE
Confidence            6543 34555554

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.41  E-value=1.8e-13  Score=110.89  Aligned_cols=146  Identities=16%  Similarity=0.273  Sum_probs=86.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee----------ccCC----cccccce--e------eecccce
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI----------DAGS----RNIDLEL--T------TLSSANH   94 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~----------~~~~----~~~~~~~--~------~~~~~~~   94 (248)
                      +.|.||||+|||||++++++ +..+.+|.+.++|.++..          ..+.    ......+  +      ..++.++
T Consensus        35 ~~liG~nGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~  113 (262)
T 1b0u_A           35 ISIIGSSGSGKSTFLRCINF-LEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLEN  113 (262)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHH
Confidence            66999999999999999998 778899999999876531          0000    0000000  0      0011111


Q ss_pred             eeeCC-CCcCcch---hHHHHHHHHHH------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           95 VELSP-SDAGFQD---RYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        95 ~~~~~-~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      +.+.. ...+...   ...+.+.++.+      ....+..+|+            ..+|+++|+||| ..||+..+..++
T Consensus       114 l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~  193 (262)
T 1b0u_A          114 VMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL  193 (262)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred             HHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence            11100 0001110   11233333322      3334445553            458999999999 899999999999


Q ss_pred             HHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          152 RTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       152 ~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +++.+... +..+|++||+.. ....+.+|+.++
T Consensus       194 ~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l  226 (262)
T 1b0u_A          194 RIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL  226 (262)
T ss_dssp             HHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEE
T ss_pred             HHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            99988743 456777777644 444677777443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.41  E-value=2.3e-12  Score=98.28  Aligned_cols=68  Identities=15%  Similarity=0.285  Sum_probs=53.0

Q ss_pred             CeeEEEEeC--C-CCCCHHHHHHHHHHHHHhcCCeeEEEEec--CCCcccHHHhhh--hheeeecCCCHHHHHHHHH
Q 025758          130 GFKVLVLNE--V-DKLSREAQHSLRRTMEKYSASCRLILCCN--SSSKVTEAIRSR--CLNIRINSPTEEQIVKVLE  199 (248)
Q Consensus       130 ~~~viiiDE--~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~--~~~~~~~~l~sR--~~~i~~~~~~~~~~~~il~  199 (248)
                      +++++++||  + ..+++.....+.+.+++  ....+|+++|  +...+.+.+++|  +.++.+...+.+++...+.
T Consensus        99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~  173 (178)
T 1ye8_A           99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL  173 (178)
T ss_dssp             TTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred             CCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence            567999999  6 67899999999999986  2344777774  566788899999  7888888877666655554

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.41  E-value=9.7e-12  Score=104.25  Aligned_cols=219  Identities=14%  Similarity=0.186  Sum_probs=124.4

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee---cc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI---DA   77 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~---~~   77 (248)
                      |+|.-. .|.....++|.+..++.|..++..+  +.++++||+|+|||++++.++...     +.+.+++.....   ..
T Consensus         1 ~~F~~~-~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~   72 (350)
T 2qen_A            1 MLFDLR-PKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRELYAERGHI   72 (350)
T ss_dssp             CCSCCS-CCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHHHHHTTTCB
T ss_pred             CCCCCC-CCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeecccccccCC
Confidence            444432 4456678999999999999998765  569999999999999999999864     122222211000   00


Q ss_pred             CCcccccce-eeecc----cce--eeeCCCCcCcc-hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----
Q 025758           78 GSRNIDLEL-TTLSS----ANH--VELSPSDAGFQ-DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (248)
Q Consensus        78 ~~~~~~~~~-~~~~~----~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----  144 (248)
                      +.......+ ..+..    ...  +.+........ ......+.+..+.....     ..++.+|+|||++.++.     
T Consensus        73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~vlvlDe~~~~~~~~~~~  147 (350)
T 2qen_A           73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE-----ELGEFIVAFDEAQYLRFYGSRG  147 (350)
T ss_dssp             CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH-----HHSCEEEEEETGGGGGGBTTTT
T ss_pred             CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh-----ccCCEEEEEeCHHHHhccCccc
Confidence            000000000 00000    000  00000000000 00112233333322110     11367999999988764     


Q ss_pred             --HHHHHHHHHHHHhcCCeeEEEEecCCCcc---------cHHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 025758          145 --EAQHSLRRTMEKYSASCRLILCCNSSSKV---------TEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (248)
Q Consensus       145 --~~~~~ll~~le~~~~~~~~Il~t~~~~~~---------~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~  212 (248)
                        .....|..+++.. .+..+|++++....+         ...+..|. ..+.+.+++.++..+++...+...+..++++
T Consensus       148 ~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~  226 (350)
T 2qen_A          148 GKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPEN  226 (350)
T ss_dssp             THHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHH
T ss_pred             hhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence              3334444444442 456777776543211         11233344 4899999999999999998887778888999


Q ss_pred             HHHHHHHHccccHHHHHHHHH
Q 025758          213 FATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       213 ~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      .+..+...++|++..+..+..
T Consensus       227 ~~~~i~~~tgG~P~~l~~~~~  247 (350)
T 2qen_A          227 EIEEAVELLDGIPGWLVVFGV  247 (350)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHH
Confidence            999999999999876654443

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.40  E-value=6.3e-13  Score=107.91  Aligned_cols=146  Identities=21%  Similarity=0.224  Sum_probs=88.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec-----cCCcccc--cceeeecccceeeeCCCCc-C-cchh
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID-----AGSRNID--LELTTLSSANHVELSPSDA-G-FQDR  107 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~-~-~~~~  107 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.++|.++...     .+.....  ..+...++.+++.+..... . ....
T Consensus        36 ~~liG~nGsGKSTLl~~i~G-l~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~  114 (266)
T 2yz2_A           36 LLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV  114 (266)
T ss_dssp             EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSH
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHH
Confidence            66999999999999999998 7788999999988654211     0000000  0001112222222221110 0 0111


Q ss_pred             HHHHHHHHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCeeEEEE
Q 025758          108 YVVQEVIKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILC  166 (248)
Q Consensus       108 ~~~~~~~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~-~~~~~Il~  166 (248)
                      ..+.+.++.+       ....+..+|+            ..+|+++++||| ..||+.....+++++.+.. .+..+|++
T Consensus       115 ~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~v  194 (266)
T 2yz2_A          115 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI  194 (266)
T ss_dssp             HHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            2233444332       2233445553            568999999999 8999999999999998874 34567777


Q ss_pred             ecCCCcccHHHhhhhhee
Q 025758          167 CNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       167 t~~~~~~~~~l~sR~~~i  184 (248)
                      ||+...+ ..+.+|+..+
T Consensus       195 tHd~~~~-~~~~d~v~~l  211 (266)
T 2yz2_A          195 SHDIETV-INHVDRVVVL  211 (266)
T ss_dssp             CSCCTTT-GGGCSEEEEE
T ss_pred             eCCHHHH-HHhCCEEEEE
Confidence            7776543 4566776443

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.39  E-value=3e-13  Score=110.04  Aligned_cols=145  Identities=17%  Similarity=0.182  Sum_probs=83.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeecccceeeeCCCCcCc-ch
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSSANHVELSPSDAGF-QD  106 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~-~~  106 (248)
                      .+.|.||||+|||||++++++ +..+.+|.+.++|.++....... ...+.+       ...++.+++.+....... ..
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~  125 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQN-LYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE  125 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc-CCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHH
Confidence            367999999999999999998 77889999999987653111000 000000       001122222221111110 00


Q ss_pred             hH------HHHHHHHHH-------HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-
Q 025758          107 RY------VVQEVIKEM-------AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-  159 (248)
Q Consensus       107 ~~------~~~~~~~~~-------~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-  159 (248)
                      ..      .+.+.++.+       ....+..+|+            ..+|+++|+||| ..||+.....+.++|.+... 
T Consensus       126 ~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~  205 (271)
T 2ixe_A          126 ITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW  205 (271)
T ss_dssp             HHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhh
Confidence            00      011112211       0112224442            558999999999 89999999999999998753 


Q ss_pred             -CeeEEEEecCCCcccHHHhhhhhe
Q 025758          160 -SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       160 -~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                       +..+|++|++...+.  ..+|+.+
T Consensus       206 ~g~tviivtHd~~~~~--~~d~v~~  228 (271)
T 2ixe_A          206 ASRTVLLITQQLSLAE--RAHHILF  228 (271)
T ss_dssp             TTSEEEEECSCHHHHT--TCSEEEE
T ss_pred             cCCEEEEEeCCHHHHH--hCCEEEE
Confidence             567888888765432  2556543

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.39  E-value=3.7e-11  Score=101.89  Aligned_cols=201  Identities=18%  Similarity=0.216  Sum_probs=122.3

Q ss_pred             ccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeec
Q 025758           13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (248)
Q Consensus        13 ~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (248)
                      .+++|+......+...+..  .....+++.|++|+||+++|+++.... .....-+.+++..+.    ....        
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s-~r~~~fv~vnc~~~~----~~~~--------  195 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS-GRKGAFVDLNCASIP----QELA--------  195 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH-CCCSCEEEEESSSSC----TTTH--------
T ss_pred             ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc-cccCCcEEEEcccCC----hHHH--------
Confidence            4567766665555444321  222348999999999999999999743 332223333221110    0000        


Q ss_pred             ccceeeeCCCC-cCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-----------
Q 025758           91 SANHVELSPSD-AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------  158 (248)
Q Consensus        91 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~-----------  158 (248)
                      ....++..... .+....  ....+.            ..+...++|||++.|++..|..|++.+++..           
T Consensus       196 ~~~lfg~~~g~~tga~~~--~~g~~~------------~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~  261 (368)
T 3dzd_A          196 ESELFGHEKGAFTGALTR--KKGKLE------------LADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIE  261 (368)
T ss_dssp             HHHHHEECSCSSSSCCCC--EECHHH------------HTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEE
T ss_pred             HHHhcCccccccCCcccc--cCChHh------------hcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCccee
Confidence            00000000000 000000  000000            1133479999999999999999999998742           


Q ss_pred             CCeeEEEEecCCC-------cccHHHhhhhh--eeeecCCCH--HHHHHHHHHHHHH----cC---CCCCHHHHHHHHHH
Q 025758          159 ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAKK----EG---LQLPSGFATRLAEK  220 (248)
Q Consensus       159 ~~~~~Il~t~~~~-------~~~~~l~sR~~--~i~~~~~~~--~~~~~il~~~~~~----~~---~~~~~~~~~~l~~~  220 (248)
                      .+.++|.+||...       .+-++|..|+.  .|.+||+..  +++..++...+.+    .+   ..+++++++.+...
T Consensus       262 ~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~  341 (368)
T 3dzd_A          262 VDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ  341 (368)
T ss_dssp             CCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred             eeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence            2356888888663       35567888884  566888876  6666665555443    22   45889999999987


Q ss_pred             c-cccHHHHHHHHHHHhhhcc
Q 025758          221 S-NRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       221 ~-~g~~r~~~~~l~~~~~~~~  240 (248)
                      . +||+|++.|.++.++..+.
T Consensus       342 ~wpGNvreL~n~i~~~~~~~~  362 (368)
T 3dzd_A          342 EWKGNVRELKNLIERAVILCE  362 (368)
T ss_dssp             CCTTHHHHHHHHHHHHHHTCC
T ss_pred             CCCcHHHHHHHHHHHHHHhCC
Confidence            6 9999999999999987654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.38  E-value=1e-13  Score=111.39  Aligned_cols=144  Identities=15%  Similarity=0.194  Sum_probs=82.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce--------eeecccceeeeCCCCcCcch
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--------TTLSSANHVELSPSDAGFQD  106 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~  106 (248)
                      .+.|.||||+||||+++++++ +..+. |.+.++|.++....... .....+        ...++.+++.+... ... .
T Consensus        28 ~~~liG~NGsGKSTLlk~l~G-l~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~-~  103 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAG-MTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-DKT-R  103 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT-SSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS-STT-C
T ss_pred             EEEEECCCCCcHHHHHHHHhC-CCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc-cCC-c
Confidence            367999999999999999998 66788 99999886543100000 000000        00111111211110 000 1


Q ss_pred             hHHHHHHHHHHH-----hcCCCcCCC------------CCCee-------EEEEeCC-CCCCHHHHHHHHHHHHHhcC-C
Q 025758          107 RYVVQEVIKEMA-----KNRPIDTKG------------KRGFK-------VLVLNEV-DKLSREAQHSLRRTMEKYSA-S  160 (248)
Q Consensus       107 ~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~-------viiiDE~-d~l~~~~~~~ll~~le~~~~-~  160 (248)
                      ...+.+.++.+.     ...+..+|+            ..+|+       ++++||| ..||+..+..+.+++.+... +
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g  183 (249)
T 2qi9_C          104 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG  183 (249)
T ss_dssp             HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCC
Confidence            222333333321     112223442            23677       9999999 89999999999999988743 4


Q ss_pred             eeEEEEecCCCcccHHHhhhhhee
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|++||+. .....+.+|+..+
T Consensus       184 ~tviivtHd~-~~~~~~~d~v~~l  206 (249)
T 2qi9_C          184 LAIVMSSHDL-NHTLRHAHRAWLL  206 (249)
T ss_dssp             CEEEEECSCH-HHHHHHCSEEEEE
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEE
Confidence            5566666664 3444666776443

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.38  E-value=1.7e-12  Score=105.08  Aligned_cols=130  Identities=18%  Similarity=0.303  Sum_probs=82.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceee-eCCCCcCc----------
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGF----------  104 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------  104 (248)
                      .+.+.||||+||||+++++++ +. +.+|.+.++|.++... .. ..           .++ +.+.....          
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~G-l~-p~~G~I~~~g~~~~~~-~~-~~-----------~i~~~v~Q~~~l~~tv~enl~~   96 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISG-LL-PYSGNIFINGMEVRKI-RN-YI-----------RYSTNLPEAYEIGVTVNDIVYL   96 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT-SS-CCEEEEEETTEEGGGC-SC-CT-----------TEEECCGGGSCTTSBHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CC-CCCcEEEECCEECcch-HH-hh-----------heEEEeCCCCccCCcHHHHHHH
Confidence            367999999999999999998 66 9999999988755311 11 10           111 11111110          


Q ss_pred             ------chhHHHHHHHHHHH------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          105 ------QDRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       105 ------~~~~~~~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                            .....+.+.++.+.      ...+..+|+            ..+|+++++||| ..||+.....+.+.+.+...
T Consensus        97 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~  176 (263)
T 2pjz_A           97 YEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK  176 (263)
T ss_dssp             HHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred             hhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence                  01112233333221      112223442            448999999999 89999999999999998765


Q ss_pred             CeeEEEEecCCCcccHHHhh-hhhe
Q 025758          160 SCRLILCCNSSSKVTEAIRS-RCLN  183 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~s-R~~~  183 (248)
                        .+|++||+...+ ..+.+ |+..
T Consensus       177 --tviivtHd~~~~-~~~~d~~i~~  198 (263)
T 2pjz_A          177 --EGILVTHELDML-NLYKEYKAYF  198 (263)
T ss_dssp             --EEEEEESCGGGG-GGCTTSEEEE
T ss_pred             --cEEEEEcCHHHH-HHhcCceEEE
Confidence              677777776543 35667 7643

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.36  E-value=7.4e-11  Score=100.78  Aligned_cols=195  Identities=17%  Similarity=0.137  Sum_probs=119.5

Q ss_pred             cccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758           12 LDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (248)
Q Consensus        12 ~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (248)
                      +.+++|+....+.+...+..  .....++++|++|+||+++|+.+..........-+.+++.                  
T Consensus       136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~------------------  197 (387)
T 1ny5_A          136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVA------------------  197 (387)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETT------------------
T ss_pred             chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecC------------------
Confidence            45677766655555544432  2223489999999999999999997432222222222221                  


Q ss_pred             cccceeeeCCCCcCcchhHHHHHHHHHHHhcCC---------CcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc--
Q 025758           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP---------IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--  158 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~--  158 (248)
                                 ..  .....-.+.   +.....         .++....+...++|||++.|++..+..|++.+++..  
T Consensus       198 -----------~~--~~~~~~~el---fg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~  261 (387)
T 1ny5_A          198 -----------SI--PRDIFEAEL---FGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFY  261 (387)
T ss_dssp             -----------TS--CHHHHHHHH---HCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEEC
T ss_pred             -----------CC--CHHHHHHHh---cCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEE
Confidence                       10  000000000   000000         000001234589999999999999999999998732  


Q ss_pred             ---------CCeeEEEEecCCC-------cccHHHhhhhh--eeeecCCCH--HHHHHHHHHHHHH----cC---CCCCH
Q 025758          159 ---------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAKK----EG---LQLPS  211 (248)
Q Consensus       159 ---------~~~~~Il~t~~~~-------~~~~~l~sR~~--~i~~~~~~~--~~~~~il~~~~~~----~~---~~~~~  211 (248)
                               .++++|.+||...       .+-+++-.|..  .|.+||+..  +++..++...+.+    .+   ..+++
T Consensus       262 ~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~  341 (387)
T 1ny5_A          262 RLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTK  341 (387)
T ss_dssp             CBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECH
T ss_pred             eCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence                     2456888888752       35667777773  566777654  5555555544432    22   23789


Q ss_pred             HHHHHHHHHc-cccHHHHHHHHHHHhhhcc
Q 025758          212 GFATRLAEKS-NRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       212 ~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~  240 (248)
                      ++++.+.... .||+|++.|.++.++..+.
T Consensus       342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~~~  371 (387)
T 1ny5_A          342 SAQELLLSYPWYGNVRELKNVIERAVLFSE  371 (387)
T ss_dssp             HHHHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence            9999998765 8999999999999887554

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.36  E-value=2.3e-13  Score=112.29  Aligned_cols=141  Identities=18%  Similarity=0.302  Sum_probs=84.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--------cccccceeeecccceeeeCCCCcCcchhH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--------RNIDLELTTLSSANHVELSPSDAGFQDRY  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (248)
                      +.|.||+|+||||+++++++ +..+..|.+.++|.++......        ......+...++.+++.+......   ..
T Consensus        83 vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~---~~  158 (306)
T 3nh6_A           83 LALVGPSGAGKSTILRLLFR-FYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAG---ND  158 (306)
T ss_dssp             EEEESSSCHHHHHHHHHHTT-SSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCC---HH
T ss_pred             EEEECCCCchHHHHHHHHHc-CCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCC---HH
Confidence            67999999999999999998 7889999999999765311100        000000000111122222111111   11


Q ss_pred             HHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          109 VVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       109 ~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      .+.+.++.     +....+           ..+|+            ..+|+|+|+||| ..||+.....+.+.|.+...
T Consensus       159 ~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~  238 (306)
T 3nh6_A          159 EVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA  238 (306)
T ss_dssp             HHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC
Confidence            12222111     111111           23442            237899999999 89999999999999988766


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhe
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +.++|++||+...+. . .+|+.+
T Consensus       239 ~~Tvi~itH~l~~~~-~-aD~i~v  260 (306)
T 3nh6_A          239 NRTTIVVAHRLSTVV-N-ADQILV  260 (306)
T ss_dssp             TSEEEEECCSHHHHH-T-CSEEEE
T ss_pred             CCEEEEEEcChHHHH-c-CCEEEE
Confidence            778888888866543 2 566543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.33  E-value=1.2e-12  Score=101.85  Aligned_cols=58  Identities=19%  Similarity=0.249  Sum_probs=44.7

Q ss_pred             ccccCCCCCcccccccH----HHHHHHHHHhhcCC----CCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758            3 WVDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQD----CPHLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~----~~~~~l~~~~~~~~----~~~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      +..+|++.+|+++++..    .+++.+..++....    ..+++|+||+|+|||++|++++..+..
T Consensus        15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~   80 (202)
T 2w58_A           15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK   80 (202)
T ss_dssp             SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34578899999999733    36666777776542    156999999999999999999997743

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=99.33  E-value=1.3e-11  Score=99.11  Aligned_cols=136  Identities=13%  Similarity=0.181  Sum_probs=87.8

Q ss_pred             HHHHHHHHhhcC-C-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeC
Q 025758           21 IAQNLKKLVTEQ-D-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (248)
Q Consensus        21 ~~~~l~~~~~~~-~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (248)
                      ....+..|++.. . ..+++|+||||||||.+|.++|..+..  .|.+                               .
T Consensus        89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l--~G~v-------------------------------n  135 (267)
T 1u0j_A           89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF--YGCV-------------------------------N  135 (267)
T ss_dssp             HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC--EEEC-------------------------------C
T ss_pred             HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc--ccee-------------------------------e
Confidence            455677777654 2 234999999999999999999984311  1111                               0


Q ss_pred             CCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHH--------Hhc-----CCeeEEE
Q 025758           99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME--------KYS-----ASCRLIL  165 (248)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le--------~~~-----~~~~~Il  165 (248)
                      .....                 .  .+....+..+++.||+...+ ++.+.+.++++        ...     ..+++|+
T Consensus       136 ~~~~~-----------------f--~l~~~~~k~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIi  195 (267)
T 1u0j_A          136 WTNEN-----------------F--PFNDCVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIV  195 (267)
T ss_dssp             TTCSS-----------------C--TTGGGSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEE
T ss_pred             ccccc-----------------c--ccccccccEEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEE
Confidence            00000                 0  01112245677777776544 45566677776        322     4567999


Q ss_pred             EecCCC-----------cccHHHhhhhheeeec--------CCCHHHHHHHHHHHHHHcCCCCC
Q 025758          166 CCNSSS-----------KVTEAIRSRCLNIRIN--------SPTEEQIVKVLEFIAKKEGLQLP  210 (248)
Q Consensus       166 ~t~~~~-----------~~~~~l~sR~~~i~~~--------~~~~~~~~~il~~~~~~~~~~~~  210 (248)
                      +||...           ...+.|+|||..+.|+        +.+.+++.+.+... ..+...++
T Consensus       196 tsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~  258 (267)
T 1u0j_A          196 TSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVE  258 (267)
T ss_dssp             EESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred             EecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence            999732           4567899999999998        89999999999855 55665544

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.32  E-value=9.6e-13  Score=105.88  Aligned_cols=146  Identities=15%  Similarity=0.124  Sum_probs=81.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCc--ccccce--e------eecccceeeeCCC---Cc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSR--NIDLEL--T------TLSSANHVELSPS---DA  102 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~------~~~~~~~~~~~~~---~~  102 (248)
                      +.|.||||+||||+++++++.+ ..+.+|.+.++|.++.......  .....+  +      ..++.+++.+...   ..
T Consensus        32 ~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  111 (250)
T 2d2e_A           32 HALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGR  111 (250)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccc
Confidence            6699999999999999999831 4678899999887653111000  000000  0      0011111111000   00


Q ss_pred             Ccc---hhHHHHHHHHHHH------hcCCCc-CCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          103 GFQ---DRYVVQEVIKEMA------KNRPID-TKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       103 ~~~---~~~~~~~~~~~~~------~~~~~~-~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      ...   ....+.+.++.+.      ...+.. +|+            ..+|+++|+||| ..||+.....+++++.+...
T Consensus       112 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~  191 (250)
T 2d2e_A          112 EVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG  191 (250)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred             cCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence            000   0112233333321      122334 664            337999999999 89999999999999998754


Q ss_pred             -CeeEEEEecCCCcccHHH-hhhhhe
Q 025758          160 -SCRLILCCNSSSKVTEAI-RSRCLN  183 (248)
Q Consensus       160 -~~~~Il~t~~~~~~~~~l-~sR~~~  183 (248)
                       +..+|++||+... ...+ .+|+.+
T Consensus       192 ~g~tvi~vtHd~~~-~~~~~~d~v~~  216 (250)
T 2d2e_A          192 PNFGALVITHYQRI-LNYIQPDKVHV  216 (250)
T ss_dssp             TTCEEEEECSSSGG-GGTSCCSEEEE
T ss_pred             cCCEEEEEecCHHH-HHHhcCCEEEE
Confidence             4567777777554 3445 366643

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.32  E-value=2.3e-13  Score=109.08  Aligned_cols=143  Identities=17%  Similarity=0.270  Sum_probs=84.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-cccccee-------eecccceeeeCCCCcCcchhH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELT-------TLSSANHVELSPSDAGFQDRY  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  108 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.++|.++....... .....+.       ..++.+++.+... .. ....
T Consensus        31 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~-~~-~~~~  107 (243)
T 1mv5_A           31 IAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLE-GD-YTDE  107 (243)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTT-SC-SCHH
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhcc-CC-CCHH
Confidence            67999999999999999998 77889999999987653111110 0001110       0111222222100 01 1112


Q ss_pred             HHHHHHHHHHh-----c-----------CCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          109 VVQEVIKEMAK-----N-----------RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       109 ~~~~~~~~~~~-----~-----------~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      .+.+.++.+.-     .           ....+|+            ..+|+++++||| ..||+.....+.+.+.+...
T Consensus       108 ~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~  187 (243)
T 1mv5_A          108 DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK  187 (243)
T ss_dssp             HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcC
Confidence            23333333221     0           1123332            337899999999 89999988888888887765


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhee
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +..+|++||+...+ . ..+|+.++
T Consensus       188 ~~tvi~vtH~~~~~-~-~~d~v~~l  210 (243)
T 1mv5_A          188 GRTTLVIAHRLSTI-V-DADKIYFI  210 (243)
T ss_dssp             TSEEEEECCSHHHH-H-HCSEEEEE
T ss_pred             CCEEEEEeCChHHH-H-hCCEEEEE
Confidence            56788888876533 2 36666444

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.32  E-value=1.7e-12  Score=104.95  Aligned_cols=141  Identities=16%  Similarity=0.223  Sum_probs=82.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC-ccccccee-------eecccceeeeCCCCcCcchh
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-RNIDLELT-------TLSSANHVELSPSDAGFQDR  107 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  107 (248)
                      .+.|.||||+||||+++++++ +..+ .|.+.++|.++...... ......+.       ..++.+++.+....   ...
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~G-l~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~---~~~  122 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYR-FYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD---ATD  122 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT-SSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTT---CCH
T ss_pred             EEEEECCCCCCHHHHHHHHhc-cCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCC---CCH
Confidence            367999999999999999998 5455 79999988654311100 00000000       01112222221100   011


Q ss_pred             HHHHHHHHHH-----H-h----------cCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758          108 YVVQEVIKEM-----A-K----------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus       108 ~~~~~~~~~~-----~-~----------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~  158 (248)
                      ..+.+.++.+     . .          ..+..+|+            ..+|+++++||| ..||+.....+.+.+.+..
T Consensus       123 ~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~  202 (260)
T 2ghi_A          123 EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR  202 (260)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence            1222222211     1 0          11234442            347899999999 8999999999999998876


Q ss_pred             CCeeEEEEecCCCcccHHHhhhhhe
Q 025758          159 ASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       159 ~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+..+|++||+...+ . ..+|+.+
T Consensus       203 ~~~tviivtH~~~~~-~-~~d~i~~  225 (260)
T 2ghi_A          203 KNRTLIIIAHRLSTI-S-SAESIIL  225 (260)
T ss_dssp             TTSEEEEECSSGGGS-T-TCSEEEE
T ss_pred             CCCEEEEEcCCHHHH-H-hCCEEEE
Confidence            666788888886654 2 3566543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.30  E-value=1.4e-12  Score=104.00  Aligned_cols=140  Identities=11%  Similarity=0.115  Sum_probs=80.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHH--
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--  113 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  113 (248)
                      .+.|.||||+||||+++++++ +..+.+|.+.++|. +.+.... ..   +...++.+++.+...... .....+.+.  
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~-i~~v~Q~-~~---~~~~tv~enl~~~~~~~~-~~~~~~~~~~~  105 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLA-EMDKVEGHVAIKGS-VAYVPQQ-AW---IQNDSLRENILFGCQLEE-PYYRSVIQACA  105 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT-CSEEEEEEEEECSC-EEEECSS-CC---CCSEEHHHHHHTTSCCCT-THHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCE-EEEEcCC-Cc---CCCcCHHHHhhCccccCH-HHHHHHHHHHh
Confidence            367999999999999999998 67788899988873 2211111 10   111122222222111000 000011111  


Q ss_pred             -HHHHH----------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHH---HhcCCeeEEEE
Q 025758          114 -IKEMA----------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME---KYSASCRLILC  166 (248)
Q Consensus       114 -~~~~~----------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le---~~~~~~~~Il~  166 (248)
                       ...+.          ...+..+|+            ..+|+++++||| ..||+.....+++.+.   +...+..+|++
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviiv  185 (237)
T 2cbz_A          106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILV  185 (237)
T ss_dssp             CHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEE
T ss_pred             hHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence             11111          111223332            337899999999 8999999999999884   33345678888


Q ss_pred             ecCCCcccHHHhhhhhee
Q 025758          167 CNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       167 t~~~~~~~~~l~sR~~~i  184 (248)
                      |++...+ . ..+|+..+
T Consensus       186 tH~~~~~-~-~~d~v~~l  201 (237)
T 2cbz_A          186 THSMSYL-P-QVDVIIVM  201 (237)
T ss_dssp             CSCSTTG-G-GSSEEEEE
T ss_pred             ecChHHH-H-hCCEEEEE
Confidence            8887654 2 46776443

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.30  E-value=5e-12  Score=101.77  Aligned_cols=143  Identities=19%  Similarity=0.216  Sum_probs=82.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCc-C------cchhHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-G------FQDRYV  109 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~  109 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.... .+.+.......   +...++.+++.+..... +      ......
T Consensus        34 ~~l~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~~-~i~~v~q~~~~---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~  108 (253)
T 2nq2_C           34 LAVLGQNGCGKSTLLDLLLG-IHRPIQGKIEVYQ-SIGFVPQFFSS---PFAYSVLDIVLMGRSTHINTFAKPKSHDYQV  108 (253)
T ss_dssp             EEEECCSSSSHHHHHHHHTT-SSCCSEEEEEECS-CEEEECSCCCC---SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEEec-cEEEEcCCCcc---CCCCCHHHHHHHhhhhhcccccCCCHHHHHH
Confidence            66999999999999999998 6788888875211 11111111000   00112222222211000 0      011122


Q ss_pred             HHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecC
Q 025758          110 VQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNS  169 (248)
Q Consensus       110 ~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~  169 (248)
                      +.+.++.+.     ...+..+|+            ..+|+++++||| ..||+.....+.+.+.+...  +..+|++||+
T Consensus       109 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd  188 (253)
T 2nq2_C          109 AMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ  188 (253)
T ss_dssp             HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred             HHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            333443321     112234442            448999999999 89999999999999988754  4567777776


Q ss_pred             CCcccHHHhhhhheee
Q 025758          170 SSKVTEAIRSRCLNIR  185 (248)
Q Consensus       170 ~~~~~~~l~sR~~~i~  185 (248)
                      ... ...+.+|+..+.
T Consensus       189 ~~~-~~~~~d~v~~l~  203 (253)
T 2nq2_C          189 PNQ-VVAIANKTLLLN  203 (253)
T ss_dssp             HHH-HHHHCSEEEEEE
T ss_pred             HHH-HHHhCCEEEEEe
Confidence            543 445667765543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.30  E-value=2.8e-12  Score=101.85  Aligned_cols=135  Identities=19%  Similarity=0.239  Sum_probs=77.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH-
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK-  115 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  115 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.++|. +.+.......   +. .++.+++.+....   . .....+.++ 
T Consensus        37 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~-i~~v~q~~~~---~~-~tv~enl~~~~~~---~-~~~~~~~~~~  106 (229)
T 2pze_A           37 LAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGR-ISFCSQFSWI---MP-GTIKENIIFGVSY---D-EYRYRSVIKA  106 (229)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEECSC-EEEECSSCCC---CS-BCHHHHHHTTSCC---C-HHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCcCCccEEEECCE-EEEEecCCcc---cC-CCHHHHhhccCCc---C-hHHHHHHHHH
Confidence            66999999999999999998 77888999988873 2111111100   00 1222222221100   0 000111111 


Q ss_pred             ----HHHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH-HHHhcCCeeEEEE
Q 025758          116 ----EMAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT-MEKYSASCRLILC  166 (248)
Q Consensus       116 ----~~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~-le~~~~~~~~Il~  166 (248)
                          ......           ...+|+            ..+|+++++||| ..||+.....+.+. +.+...+..+|++
T Consensus       107 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~v  186 (229)
T 2pze_A          107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV  186 (229)
T ss_dssp             TTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEE
T ss_pred             hCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence                111111           123332            347899999999 89999999999986 4554445677888


Q ss_pred             ecCCCcccHHHhhhhhe
Q 025758          167 CNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       167 t~~~~~~~~~l~sR~~~  183 (248)
                      ||+...+ . ..+|+..
T Consensus       187 tH~~~~~-~-~~d~v~~  201 (229)
T 2pze_A          187 TSKMEHL-K-KADKILI  201 (229)
T ss_dssp             CCCHHHH-H-HCSEEEE
T ss_pred             cCChHHH-H-hCCEEEE
Confidence            8775443 2 3566543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.29  E-value=9.3e-13  Score=112.06  Aligned_cols=140  Identities=19%  Similarity=0.279  Sum_probs=85.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCC--------cccccceeeecccceeeeCCCCcCcchh
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--------RNIDLELTTLSSANHVELSPSDAGFQDR  107 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (248)
                      .+.|.||+|+||||++++|++ +.. .+|.+.++|.++....+.        .+..+.+...++.+++.+..    ....
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG-l~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~----~~~~  122 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR-LLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA----AHSD  122 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT-CSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTC----CSCH
T ss_pred             EEEEECCCCChHHHHHHHHhC-CCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcc----ccCH
Confidence            367999999999999999998 555 789999998765311110        00000000011111121111    0111


Q ss_pred             HHHHHHHH-----HHHhcCCCc-----------CCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758          108 YVVQEVIK-----EMAKNRPID-----------TKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus       108 ~~~~~~~~-----~~~~~~~~~-----------~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~  158 (248)
                      ..+.+.++     .+....+..           +|+            ..+|+++++||| ..||+..+..+.+.|.+..
T Consensus       123 ~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~  202 (390)
T 3gd7_A          123 QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF  202 (390)
T ss_dssp             HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence            22333332     233344444           553            348999999999 8999999999999998776


Q ss_pred             CCeeEEEEecCCCcccHHHhhhhhe
Q 025758          159 ASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       159 ~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+..+|++||+.+. . ...+|+.+
T Consensus       203 ~~~tvi~vtHd~e~-~-~~aDri~v  225 (390)
T 3gd7_A          203 ADCTVILCEARIEA-M-LECDQFLV  225 (390)
T ss_dssp             TTSCEEEECSSSGG-G-TTCSEEEE
T ss_pred             CCCEEEEEEcCHHH-H-HhCCEEEE
Confidence            66788888888643 3 23677643

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.29  E-value=6.3e-13  Score=108.50  Aligned_cols=146  Identities=19%  Similarity=0.111  Sum_probs=84.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee--eccCC-cccccce--ee--------ecccceeeeCCCC--
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK--IDAGS-RNIDLEL--TT--------LSSANHVELSPSD--  101 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~--~~--------~~~~~~~~~~~~~--  101 (248)
                      +.|.||||+|||||++++++ +..+.+|.+.++|.++.  ..... ......+  +.        .++.+++.+....  
T Consensus        50 ~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~  128 (279)
T 2ihy_A           50 WILYGLNGAGKTTLLNILNA-YEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI  128 (279)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC----
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhcc
Confidence            66999999999999999998 77889999999987653  10000 0000000  00        0111222221100  


Q ss_pred             --cCcch---hHHHHHHHHHHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758          102 --AGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus       102 --~~~~~---~~~~~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~  158 (248)
                        .+...   ...+.+.++.+.     ...+..+|+            ..+|+++|+||| ..||+..+..+.+++.+..
T Consensus       129 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~  208 (279)
T 2ihy_A          129 GVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLS  208 (279)
T ss_dssp             -----CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             ccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence              00001   112333333321     122224442            458999999999 8999999999999998774


Q ss_pred             C-CeeE--EEEecCCCcccHHHhhhhhee
Q 025758          159 A-SCRL--ILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       159 ~-~~~~--Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      . +..+  |++|++...+ ..+.+|+.++
T Consensus       209 ~~g~tv~~iivtHd~~~~-~~~~d~v~~l  236 (279)
T 2ihy_A          209 DSYPTLAMIYVTHFIEEI-TANFSKILLL  236 (279)
T ss_dssp             HHCTTCEEEEEESCGGGC-CTTCCEEEEE
T ss_pred             HCCCEEEEEEEecCHHHH-HHhCCEEEEE
Confidence            3 4556  7888876544 3566776433

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.27  E-value=3.9e-12  Score=114.26  Aligned_cols=158  Identities=14%  Similarity=0.240  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeecc
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSS   91 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~   91 (248)
                      .+++.+...+++|..  +.+.||+|+||||+++++++ +..+..|.+.++|.++....... +.....       -..+.
T Consensus       357 ~~l~~i~l~i~~G~~--~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv  433 (582)
T 3b5x_A          357 PALSHVSFSIPQGKT--VALVGRSGSGKSTIANLFTR-FYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI  433 (582)
T ss_pred             cccccceEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccH
Confidence            355555555655543  56999999999999999998 77889999999997653111100 000000       00112


Q ss_pred             cceeeeCCCCcCcchhHHHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCC
Q 025758           92 ANHVELSPSDAGFQDRYVVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKL  142 (248)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l  142 (248)
                      .+++.+... .. .....+.+.++.     +....           ...+|+            ..+|+++++||| ..+
T Consensus       434 ~eni~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~L  511 (582)
T 3b5x_A          434 ANNIAYAAE-GE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL  511 (582)
T ss_pred             HHHHhccCC-CC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence            222222110 01 111222232221     11111           123442            458999999999 899


Q ss_pred             CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          143 SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       143 ~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      |+.....+.+.+.+..++..+|++||+...+.  ..+|+.++
T Consensus       512 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~--~~d~i~~l  551 (582)
T 3b5x_A          512 DTESERAIQAALDELQKNKTVLVIAHRLSTIE--QADEILVV  551 (582)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH--hCCEEEEE
Confidence            99999999999998766677888888876442  35665443

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.24  E-value=2.6e-10  Score=95.64  Aligned_cols=209  Identities=12%  Similarity=0.171  Sum_probs=117.5

Q ss_pred             CCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee--eccCCcccccce
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK--IDAGSRNIDLEL   86 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (248)
                      +.....++|.+..++.|.. +..   +.++++||+|+|||++++.++..+.. .  .+.+++....  ...+.......+
T Consensus         9 ~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l   81 (357)
T 2fna_A            9 KDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-P--YIYLDLRKFEERNYISYKDFLLEL   81 (357)
T ss_dssp             CCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-C--EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred             CCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-C--EEEEEchhhccccCCCHHHHHHHH
Confidence            3455788999999999998 765   57999999999999999999987532 1  2222221110  000000000000


Q ss_pred             -eee--------------cccceeeeCCCCcCcc----hhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH---
Q 025758           87 -TTL--------------SSANHVELSPSDAGFQ----DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---  144 (248)
Q Consensus        87 -~~~--------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---  144 (248)
                       ..+              .....+..........    ......+.+..+....      . ++.+|+|||++.++.   
T Consensus        82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~-~~~vlvlDe~~~~~~~~~  154 (357)
T 2fna_A           82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQAS------K-DNVIIVLDEAQELVKLRG  154 (357)
T ss_dssp             HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTC------S-SCEEEEEETGGGGGGCTT
T ss_pred             HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcC------C-CCeEEEEECHHHhhccCc
Confidence             000              0000000000000000    0112344454444321      1 367999999988754   


Q ss_pred             -HHHHHHHHHHHHhcCCeeEEEEecCCCccc---------HHHhhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758          145 -EAQHSLRRTMEKYSASCRLILCCNSSSKVT---------EAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF  213 (248)
Q Consensus       145 -~~~~~ll~~le~~~~~~~~Il~t~~~~~~~---------~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~  213 (248)
                       .....+..+++.. .+..+|++++....+.         ..+..|. ..+.+.+++.++..+++...+...+...++. 
T Consensus       155 ~~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-  232 (357)
T 2fna_A          155 VNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-  232 (357)
T ss_dssp             CCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH-
T ss_pred             hhHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH-
Confidence             2233343344432 3567787776532111         1234454 6899999999999999998887667666554 


Q ss_pred             HHHHHHHccccHHHHHHHHHH
Q 025758          214 ATRLAEKSNRSLRRAILSFET  234 (248)
Q Consensus       214 ~~~l~~~~~g~~r~~~~~l~~  234 (248)
                       ..+...++|++..+..+...
T Consensus       233 -~~i~~~t~G~P~~l~~~~~~  252 (357)
T 2fna_A          233 -EVVYEKIGGIPGWLTYFGFI  252 (357)
T ss_dssp             -HHHHHHHCSCHHHHHHHHHH
T ss_pred             -HHHHHHhCCCHHHHHHHHHH
Confidence             88888999988776555443

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=99.23  E-value=5.4e-11  Score=103.88  Aligned_cols=59  Identities=20%  Similarity=0.327  Sum_probs=43.3

Q ss_pred             CccccCCCCCccccc-ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758            2 LWVDKYRPKTLDQVI-VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus         2 ~~~~ky~p~~~~~li-g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      +|++||+|++|+++- +|..++..+..++..+. .++++.|++|||||+++..++..+...
T Consensus        13 ~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~   72 (459)
T 3upu_A           13 GLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST   72 (459)
T ss_dssp             --------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            699999999999995 68888888888877654 379999999999999999999987544

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.23  E-value=9.3e-12  Score=101.01  Aligned_cols=145  Identities=14%  Similarity=0.142  Sum_probs=80.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH-cCCCcccceecccceeeccCCcccccceeee----------cccceeeeCC------
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRNIDLELTTL----------SSANHVELSP------   99 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~------   99 (248)
                      +.|.||||+||||+++++++.+ ..+.+|.+.++|.++....+..........+          ++.+++.+..      
T Consensus        49 ~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~  128 (267)
T 2zu0_C           49 HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY  128 (267)
T ss_dssp             EEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhh
Confidence            6799999999999999999832 2467899999887543111100000000000          0000000000      


Q ss_pred             -CCcCcch---hHHHHHHHHHHHh------cCCC-cCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHH
Q 025758          100 -SDAGFQD---RYVVQEVIKEMAK------NRPI-DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (248)
Q Consensus       100 -~~~~~~~---~~~~~~~~~~~~~------~~~~-~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le  155 (248)
                       .......   ...+.+.++.+.-      ..+. .+|+            ..+|+++|+||| ..||+.....+++++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~  208 (267)
T 2zu0_C          129 RGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN  208 (267)
T ss_dssp             GGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             hccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence             0000000   1123333333221      1111 2442            338999999999 8999999999999999


Q ss_pred             HhcC-CeeEEEEecCCCcccHHH-hhhhh
Q 025758          156 KYSA-SCRLILCCNSSSKVTEAI-RSRCL  182 (248)
Q Consensus       156 ~~~~-~~~~Il~t~~~~~~~~~l-~sR~~  182 (248)
                      +... +..+|++|++...+ ..+ .+|+.
T Consensus       209 ~l~~~g~tviivtHd~~~~-~~~~~d~v~  236 (267)
T 2zu0_C          209 SLRDGKRSFIIVTHYQRIL-DYIKPDYVH  236 (267)
T ss_dssp             TTCCSSCEEEEECSSGGGG-GTSCCSEEE
T ss_pred             HHHhcCCEEEEEeeCHHHH-HhhcCCEEE
Confidence            8754 45677777775443 343 56663

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.21  E-value=8.6e-12  Score=111.90  Aligned_cols=141  Identities=19%  Similarity=0.253  Sum_probs=84.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeecccceeeeCCCCcCcchhH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSANHVELSPSDAGFQDRY  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (248)
                      +.+.||+|+||||+++++++ +..+..|.+.++|.++.......        .....+-..++.+++.+....   ....
T Consensus       370 ~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~  445 (578)
T 4a82_A          370 VAFVGMSGGGKSTLINLIPR-FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT---ATDE  445 (578)
T ss_dssp             EEEECSTTSSHHHHHTTTTT-SSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS---CCHH
T ss_pred             EEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCC---CCHH
Confidence            67999999999999999998 77899999999997654111100        000000000111222221111   0111


Q ss_pred             HHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          109 VVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       109 ~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      .+.+.++.     +....|           ..+|+            ..+|+++++||| ..+|+.....+.+.+++...
T Consensus       446 ~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~  525 (578)
T 4a82_A          446 EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK  525 (578)
T ss_dssp             HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC
Confidence            12222211     111112           13332            237999999999 89999999999999988777


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhe
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +.++|++||+.+.+.  ..+|+.+
T Consensus       526 ~~t~i~itH~l~~~~--~~d~i~~  547 (578)
T 4a82_A          526 DRTTLIVAHRLSTIT--HADKIVV  547 (578)
T ss_dssp             TSEEEEECSSGGGTT--TCSEEEE
T ss_pred             CCEEEEEecCHHHHH--cCCEEEE
Confidence            778888998877653  2566643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.20  E-value=1.1e-11  Score=111.59  Aligned_cols=143  Identities=18%  Similarity=0.259  Sum_probs=85.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc--------ccccceeeecccceeeeCCCCcCcchh
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--------NIDLELTTLSSANHVELSPSDAGFQDR  107 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (248)
                      .+.+.||+|+||||+++++++ +..+..|.+.++|.++.......        .....+-..+..+++.+.....   ..
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~---~~  458 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMR-FYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA---TD  458 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTT-SSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTC---CT
T ss_pred             EEEEECCCCCcHHHHHHHHhc-CcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCC---CH
Confidence            367999999999999999998 77899999999997654111100        0000000001111121111000   00


Q ss_pred             HHHHHHH-----HHHHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758          108 YVVQEVI-----KEMAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus       108 ~~~~~~~-----~~~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~  158 (248)
                      ..+.+.+     ..+....+           ..+|+            ..+|+++++||| ..+|+.....+.+.+.+..
T Consensus       459 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~  538 (598)
T 3qf4_B          459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM  538 (598)
T ss_dssp             THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence            1111111     11111111           12332            347899999999 8999999999999998877


Q ss_pred             CCeeEEEEecCCCcccHHHhhhhhee
Q 025758          159 ASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       159 ~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+.++|++||+...+.  ..+|+.++
T Consensus       539 ~~~t~i~itH~l~~~~--~~d~i~~l  562 (598)
T 3qf4_B          539 EGKTSIIIAHRLNTIK--NADLIIVL  562 (598)
T ss_dssp             TTSEEEEESCCTTHHH--HCSEEEEE
T ss_pred             CCCEEEEEecCHHHHH--cCCEEEEE
Confidence            6778899999887642  25666443

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.20  E-value=1.1e-11  Score=101.65  Aligned_cols=134  Identities=20%  Similarity=0.279  Sum_probs=76.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH-
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK-  115 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  115 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.++|. +.+....... +  . .++.+++. ...   . ......+.++ 
T Consensus        67 ~~i~G~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~-i~~v~Q~~~l-~--~-~tv~enl~-~~~---~-~~~~~~~~~~~  135 (290)
T 2bbs_A           67 LAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGR-ISFCSQNSWI-M--P-GTIKENII-GVS---Y-DEYRYRSVIKA  135 (290)
T ss_dssp             EEEEESTTSSHHHHHHHHTT-SSCEEEEEEECCSC-EEEECSSCCC-C--S-SBHHHHHH-TTC---C-CHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCE-EEEEeCCCcc-C--c-ccHHHHhh-Ccc---c-chHHHHHHHHH
Confidence            67999999999999999998 67888899888773 2211111100 0  0 11222221 000   0 0000111111 


Q ss_pred             ----HHHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH-HHHhcCCeeEEEE
Q 025758          116 ----EMAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT-MEKYSASCRLILC  166 (248)
Q Consensus       116 ----~~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~-le~~~~~~~~Il~  166 (248)
                          ......+           ..+|+            ..+|+++++||| ..||+..+..+++. +.+...+..+|++
T Consensus       136 ~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviiv  215 (290)
T 2bbs_A          136 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV  215 (290)
T ss_dssp             TTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEE
T ss_pred             hChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence                1111111           23332            347899999999 89999999999986 4444445678888


Q ss_pred             ecCCCcccHHHhhhhhe
Q 025758          167 CNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       167 t~~~~~~~~~l~sR~~~  183 (248)
                      ||+...+ . ..+|+..
T Consensus       216 tHd~~~~-~-~~d~i~~  230 (290)
T 2bbs_A          216 TSKMEHL-K-KADKILI  230 (290)
T ss_dssp             CCCHHHH-H-HSSEEEE
T ss_pred             ecCHHHH-H-cCCEEEE
Confidence            8876443 2 4666543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=99.20  E-value=3.4e-11  Score=92.71  Aligned_cols=119  Identities=18%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             HHHHHHHHhhcCC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758           21 IAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (248)
Q Consensus        21 ~~~~l~~~~~~~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (248)
                      ....|+.++.+-. ..+++|+|||||||||+|.++|+.+..    ++                            +.+..
T Consensus        44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g----~i----------------------------~~fan   91 (212)
T 1tue_A           44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG----AV----------------------------ISFVN   91 (212)
T ss_dssp             HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC----EE----------------------------CCCCC
T ss_pred             HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC----Ce----------------------------eeEEe
Confidence            3456666665411 125999999999999999999997621    11                            01100


Q ss_pred             CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH-HHHHHHHHHHHhc-------------CCeeEEE
Q 025758          100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-AQHSLRRTMEKYS-------------ASCRLIL  165 (248)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-~~~~ll~~le~~~-------------~~~~~Il  165 (248)
                      ......        +   .        ...+.++++|||++.-... ....+..+++..+             ...++|+
T Consensus        92 s~s~f~--------l---~--------~l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlII  152 (212)
T 1tue_A           92 STSHFW--------L---E--------PLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILL  152 (212)
T ss_dssp             SSSCGG--------G---G--------GGTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEE
T ss_pred             ccchhh--------h---c--------ccCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEE
Confidence            000000        0   0        0113569999999732111 1233445555421             1247999


Q ss_pred             EecCC---CcccHHHhhhhheeeecCCC
Q 025758          166 CCNSS---SKVTEAIRSRCLNIRINSPT  190 (248)
Q Consensus       166 ~t~~~---~~~~~~l~sR~~~i~~~~~~  190 (248)
                      |||..   ....+.|.||+..+.|+.+.
T Consensus       153 TtN~~~~~~~~~~~L~SRi~~f~F~~~~  180 (212)
T 1tue_A          153 TTNIHPAKDNRWPYLESRITVFEFPNAF  180 (212)
T ss_dssp             EESSCTTSSSSCHHHHTSCEEEECCSCC
T ss_pred             ecCCCcccccchhhhhhhEEEEEcCCCC
Confidence            99985   34567899999998887543

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=99.20  E-value=9.7e-12  Score=103.02  Aligned_cols=56  Identities=23%  Similarity=0.370  Sum_probs=42.8

Q ss_pred             cccCCCCCccccccc----HHHHHHHHHHhhcC---CCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758            4 VDKYRPKTLDQVIVH----QDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus         4 ~~ky~p~~~~~lig~----~~~~~~l~~~~~~~---~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|++.+|+++++.    ..++..+..++...   ...+++|+||+|+|||++|++++..+.
T Consensus       115 ~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          115 PKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            345678999999862    33556666777653   235699999999999999999999774

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.19  E-value=1.2e-11  Score=111.02  Aligned_cols=144  Identities=14%  Similarity=0.246  Sum_probs=85.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccce-------eeecccceeeeCCCCcCcchh
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL-------TTLSSANHVELSPSDAGFQDR  107 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  107 (248)
                      .+.+.||+|+||||+++++++ +..+.+|.+.++|.++....... +.....       -..+..+++.+... .. ...
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g-~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~-~~~  447 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITR-FYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART-EE-YSR  447 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT-TTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT-SC-CCH
T ss_pred             EEEEECCCCCCHHHHHHHHhh-ccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC-CC-CCH
Confidence            367999999999999999998 77899999999997653111000 000000       00011222222110 00 111


Q ss_pred             HHHHHHHHH-----HHhcC-----------CCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758          108 YVVQEVIKE-----MAKNR-----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus       108 ~~~~~~~~~-----~~~~~-----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~  158 (248)
                      ..+.+.++.     +....           ...+|+            ..+|+++++||| ..+|+.....+.+.+.+..
T Consensus       448 ~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~  527 (582)
T 3b60_A          448 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ  527 (582)
T ss_dssp             HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence            222222221     11111           123442            337899999999 8999999999999998876


Q ss_pred             CCeeEEEEecCCCcccHHHhhhhhee
Q 025758          159 ASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       159 ~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ++..+|++||+...+.  ..+|+.++
T Consensus       528 ~~~tvi~itH~~~~~~--~~d~i~~l  551 (582)
T 3b60_A          528 KNRTSLVIAHRLSTIE--QADEIVVV  551 (582)
T ss_dssp             TTSEEEEECSCGGGTT--TCSEEEEE
T ss_pred             CCCEEEEEeccHHHHH--hCCEEEEE
Confidence            6677888888876542  35665433

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.19  E-value=1.5e-11  Score=110.48  Aligned_cols=141  Identities=17%  Similarity=0.277  Sum_probs=84.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccc-------eeeecccceeeeCCCCcCcchhH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLE-------LTTLSSANHVELSPSDAGFQDRY  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  108 (248)
                      +.+.||+|+||||+++++++ +..+.+|.+.++|.++....... +....       +-..+..+++.+.....   ...
T Consensus       372 ~~ivG~sGsGKSTll~~l~g-~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~---~~~  447 (587)
T 3qf4_A          372 VAVLGETGSGKSTLMNLIPR-LIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDA---TDD  447 (587)
T ss_dssp             EEEECSSSSSHHHHHHTTTT-SSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSC---CHH
T ss_pred             EEEECCCCCCHHHHHHHHhC-CccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCC---CHH
Confidence            67999999999999999998 77899999999997654111100 00000       00001112222211111   111


Q ss_pred             HHHHHHH-----HHHhc-----------CCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          109 VVQEVIK-----EMAKN-----------RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       109 ~~~~~~~-----~~~~~-----------~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      ...+.++     .+...           .+..+|+            ..+|+++++||| ..+|+.....+.+.+.+..+
T Consensus       448 ~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~  527 (587)
T 3qf4_A          448 EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK  527 (587)
T ss_dssp             HHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC
Confidence            1112111     11111           1123332            347899999999 89999999999999988777


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhe
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +.++|++||+...+.  ..+|+.+
T Consensus       528 ~~tvi~itH~l~~~~--~~d~i~v  549 (587)
T 3qf4_A          528 GCTTFIITQKIPTAL--LADKILV  549 (587)
T ss_dssp             TCEEEEEESCHHHHT--TSSEEEE
T ss_pred             CCEEEEEecChHHHH--hCCEEEE
Confidence            778999999876542  4566543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.11  E-value=1.3e-10  Score=103.10  Aligned_cols=144  Identities=17%  Similarity=0.215  Sum_probs=82.5

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (248)
                      +.|.||||+||||+++++++ +..+.+|.+.+.+..+...........   ..++.+.+..............+.+.++.
T Consensus       297 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~l~~  372 (538)
T 3ozx_A          297 IGILGPNGIGKTTFARILVG-EITADEGSVTPEKQILSYKPQRIFPNY---DGTVQQYLENASKDALSTSSWFFEEVTKR  372 (538)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSBCCEESSCCCEEEECSSCCCCC---SSBHHHHHHHHCSSTTCTTSHHHHHTTTT
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCeeeEeechhccccc---CCCHHHHHHHhhhhccchhHHHHHHHHHH
Confidence            77999999999999999998 778899998877665442222111000   00011111100000000000011111111


Q ss_pred             -----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHH
Q 025758          117 -----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEA  176 (248)
Q Consensus       117 -----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~  176 (248)
                           .....+..+|+            ..+|+++|+||| .+||...+..++++|.+...  +..+|++||+.. ....
T Consensus       373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~  451 (538)
T 3ozx_A          373 LNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDY  451 (538)
T ss_dssp             TTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHH
T ss_pred             cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHH
Confidence                 11112223332            347899999999 89999999999999988743  456777776654 4557


Q ss_pred             Hhhhhheee
Q 025758          177 IRSRCLNIR  185 (248)
Q Consensus       177 l~sR~~~i~  185 (248)
                      +.+|+.++.
T Consensus       452 ~aDri~vl~  460 (538)
T 3ozx_A          452 IADRIIVFK  460 (538)
T ss_dssp             HCSEEEEEE
T ss_pred             hCCEEEEEe
Confidence            778875543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.09  E-value=2.2e-10  Score=101.69  Aligned_cols=56  Identities=13%  Similarity=0.196  Sum_probs=43.3

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|+++|+||| .+||...+..+.++|.+..  .+..+|++||+.. ....+.+|+.++
T Consensus       417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl  475 (538)
T 1yqt_A          417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVF  475 (538)
T ss_dssp             TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred             HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            558999999999 8999999999999998864  2456777777654 445777777544

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.08  E-value=2.8e-10  Score=102.23  Aligned_cols=143  Identities=16%  Similarity=0.203  Sum_probs=79.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (248)
                      .+.|.||||+|||||++++++ +..+.+|.+.+.. .+.+........   ...++.+.+.... .........+.+.++
T Consensus       384 i~~i~G~NGsGKSTLlk~l~G-l~~p~~G~I~~~~-~i~~v~Q~~~~~---~~~tv~e~~~~~~-~~~~~~~~~~~~~l~  457 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDL-TVAYKPQYIKAE---YEGTVYELLSKID-SSKLNSNFYKTELLK  457 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT-SSCCSBSCCCCCC-CEEEECSSCCCC---CSSBHHHHHHHHH-HHHHHCHHHHHHTHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc-CCCCCceEEEEee-EEEEEecCccCC---CCCcHHHHHHhhh-ccCCCHHHHHHHHHH
Confidence            377999999999999999998 6788888776421 111111000000   0000000000000 000000111222233


Q ss_pred             HHH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCeeEEEEecCCCcccH
Q 025758          116 EMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTE  175 (248)
Q Consensus       116 ~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~  175 (248)
                      .+.     ...+..+|+            ..+++++|+||| .+||...+..+.++|.+..  .+..+|++||+. ....
T Consensus       458 ~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~  536 (607)
T 3bk7_A          458 PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMID  536 (607)
T ss_dssp             HHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHH
T ss_pred             HcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHH
Confidence            221     111223432            558999999999 8999999999999998874  345677777764 4445


Q ss_pred             HHhhhhheee
Q 025758          176 AIRSRCLNIR  185 (248)
Q Consensus       176 ~l~sR~~~i~  185 (248)
                      .+.+|+.++.
T Consensus       537 ~~adrv~vl~  546 (607)
T 3bk7_A          537 YVSDRLIVFE  546 (607)
T ss_dssp             HHCSEEEEEE
T ss_pred             HhCCEEEEEc
Confidence            6777775543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.04  E-value=1.1e-10  Score=103.60  Aligned_cols=55  Identities=11%  Similarity=0.138  Sum_probs=44.5

Q ss_pred             CCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+|+++|+||| ..||+.....++++|++...+..+|+++|+.. ....+.+|+.++
T Consensus       155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~-~~~~~~d~i~vl  210 (538)
T 3ozx_A          155 READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI-VLDYLTDLIHII  210 (538)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHH-HHHHHCSEEEEE
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChH-HHHhhCCEEEEe
Confidence            47899999999 89999999999999998866667777777764 455777777554

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.99  E-value=3.9e-10  Score=100.15  Aligned_cols=56  Identities=11%  Similarity=0.134  Sum_probs=43.8

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|+++|+||| ..||+.....+++.|++... +..+|++||+.. ....+.+|+.++
T Consensus       174 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl  231 (538)
T 1yqt_A          174 LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV  231 (538)
T ss_dssp             HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred             hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            347899999999 89999999999999988743 456777777644 556777887654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.96  E-value=1.4e-09  Score=97.63  Aligned_cols=141  Identities=12%  Similarity=0.169  Sum_probs=77.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (248)
                      +.|.||||+||||+++++++ +..+.+|.. +....+.........  .+ ..++.+.+..... ..........+.++.
T Consensus       381 v~iiG~NGsGKSTLlk~l~G-l~~p~~G~~-~~~~~i~~~~q~~~~--~~-~~tv~e~~~~~~~-~~~~~~~~~~~~l~~  454 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAG-ALKPDEGQD-IPKLNVSMKPQKIAP--KF-PGTVRQLFFKKIR-GQFLNPQFQTDVVKP  454 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHT-SSCCSBCCC-CCSCCEEEECSSCCC--CC-CSBHHHHHHHHCS-STTTSHHHHHHTHHH
T ss_pred             EEEECCCCCcHHHHHHHHhc-CCCCCCCcC-ccCCcEEEecccccc--cC-CccHHHHHHHHhh-cccccHHHHHHHHHH
Confidence            68999999999999999998 667776642 111111100000000  00 0000000000000 000111122233333


Q ss_pred             HH-----hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCeeEEEEecCCCcccHH
Q 025758          117 MA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEA  176 (248)
Q Consensus       117 ~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~  176 (248)
                      +.     ...+..+|+            ..+|+++++||| .+||+..+..+.++|.+..  .+..+|++||+.. ....
T Consensus       455 l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~  533 (608)
T 3j16_B          455 LRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATY  533 (608)
T ss_dssp             HTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHH
T ss_pred             cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHH
Confidence            22     222334442            458999999999 8999999999999998863  3456777777654 4446


Q ss_pred             Hhhhhhee
Q 025758          177 IRSRCLNI  184 (248)
Q Consensus       177 l~sR~~~i  184 (248)
                      +.+|+.++
T Consensus       534 ~aDrvivl  541 (608)
T 3j16_B          534 LADKVIVF  541 (608)
T ss_dssp             HCSEEEEC
T ss_pred             hCCEEEEE
Confidence            77777443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.94  E-value=5.7e-09  Score=87.10  Aligned_cols=128  Identities=15%  Similarity=0.160  Sum_probs=77.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      +.+.+...+..|.  .+++.||+|+||||+++++++ +..+..|.+.+++..-. ..+.           ....+.+...
T Consensus       160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g-~~~~~~g~i~i~~~~e~-~~~~-----------~~~~i~~~~g  224 (330)
T 2pt7_A          160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIME-FIPKEERIISIEDTEEI-VFKH-----------HKNYTQLFFG  224 (330)
T ss_dssp             HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGG-GSCTTSCEEEEESSCCC-CCSS-----------CSSEEEEECB
T ss_pred             HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhC-CCcCCCcEEEECCeecc-cccc-----------chhEEEEEeC
Confidence            6677787887764  477999999999999999998 66788898888775311 0000           1112222221


Q ss_pred             CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhh
Q 025758          101 DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRS  179 (248)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~s  179 (248)
                           ...+.+..+....         ..+|+++++||+..  ..    +.+.++....+. .+|+++|...  .....+
T Consensus       225 -----gg~~~r~~la~aL---------~~~p~ilildE~~~--~e----~~~~l~~~~~g~~tvi~t~H~~~--~~~~~d  282 (330)
T 2pt7_A          225 -----GNITSADCLKSCL---------RMRPDRIILGELRS--SE----AYDFYNVLCSGHKGTLTTLHAGS--SEEAFI  282 (330)
T ss_dssp             -----TTBCHHHHHHHHT---------TSCCSEEEECCCCS--TH----HHHHHHHHHTTCCCEEEEEECSS--HHHHHH
T ss_pred             -----CChhHHHHHHHHh---------hhCCCEEEEcCCCh--HH----HHHHHHHHhcCCCEEEEEEcccH--HHHHhh
Confidence                 2223444444333         23678999999954  22    233444433333 4777878766  445567


Q ss_pred             hhheee
Q 025758          180 RCLNIR  185 (248)
Q Consensus       180 R~~~i~  185 (248)
                      |+..+.
T Consensus       283 ri~~l~  288 (330)
T 2pt7_A          283 RLANMS  288 (330)
T ss_dssp             HHHHHH
T ss_pred             hheehh
Confidence            765443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.94  E-value=3e-10  Score=85.96  Aligned_cols=45  Identities=13%  Similarity=0.157  Sum_probs=32.5

Q ss_pred             CCeeEEEEeCC-CCCCHH----------------HHHHHHHHHHHhc-CCeeEEEEecCCCcc
Q 025758          129 RGFKVLVLNEV-DKLSRE----------------AQHSLRRTMEKYS-ASCRLILCCNSSSKV  173 (248)
Q Consensus       129 ~~~~viiiDE~-d~l~~~----------------~~~~ll~~le~~~-~~~~~Il~t~~~~~~  173 (248)
                      .+++++++||+ ..+++.                ....+.+.+.+.. .+..+|++||+...+
T Consensus       100 ~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~  162 (171)
T 4gp7_A          100 CFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEV  162 (171)
T ss_dssp             CEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHH
T ss_pred             CcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHh
Confidence            38899999999 788877                4466777766543 345788888886543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.94  E-value=1e-09  Score=98.43  Aligned_cols=57  Identities=12%  Similarity=0.062  Sum_probs=43.5

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhheee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ..+|+++++||| ..||+.....+++++++.... ..+|+++|+. .....+.+|+.++.
T Consensus       237 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~  295 (608)
T 3j16_B          237 VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIY  295 (608)
T ss_dssp             HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEE
T ss_pred             HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEe
Confidence            347899999999 899999999999999987554 4566666654 44457778876553

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.93  E-value=7.8e-10  Score=99.35  Aligned_cols=57  Identities=9%  Similarity=0.117  Sum_probs=44.0

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhheee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ..+|+++|+||| .+||+.....++++|++... +..+|++||+.. ....+.+|+.++.
T Consensus       244 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~  302 (607)
T 3bk7_A          244 LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVY  302 (607)
T ss_dssp             HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred             hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEEC
Confidence            348899999999 89999999999999988744 456777777644 5567777875553

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.93  E-value=9.9e-10  Score=106.61  Aligned_cols=143  Identities=20%  Similarity=0.267  Sum_probs=86.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-cccccee-------eecccceeeeCCCCcCcchhH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELT-------TLSSANHVELSPSDAGFQDRY  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  108 (248)
                      +.+.||+|+||||+++++++ +..+..|.+.++|.++....... +......       ..+..+++.+....... ...
T Consensus      1062 v~ivG~sGsGKSTl~~~l~g-~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~-~~~ 1139 (1284)
T 3g5u_A         1062 LALVGSSGCGKSTVVQLLER-FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV-SYE 1139 (1284)
T ss_dssp             EEEECSSSTTHHHHHHHHTT-SSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCC-CHH
T ss_pred             EEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCC-CHH
Confidence            67999999999999999998 78899999999997654211100 0000000       00111122221111111 111


Q ss_pred             HHHHHHH-----HHHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          109 VVQEVIK-----EMAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       109 ~~~~~~~-----~~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      .+.+.++     .+....+           ..+|+            ..+|+++++||| ..+|......+.+.+++...
T Consensus      1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~ 1219 (1284)
T 3g5u_A         1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219 (1284)
T ss_dssp             HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCC
Confidence            1222222     1222222           12332            237899999999 79999999999999988777


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhe
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +..+|++||+.+.+..  .+|+.+
T Consensus      1220 ~~tvi~isH~l~~i~~--~dri~v 1241 (1284)
T 3g5u_A         1220 GRTCIVIAHRLSTIQN--ADLIVV 1241 (1284)
T ss_dssp             SSCEEEECSCTTGGGS--CSEEEE
T ss_pred             CCEEEEEecCHHHHHc--CCEEEE
Confidence            7789999999887532  677643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.92  E-value=9.3e-10  Score=106.79  Aligned_cols=133  Identities=20%  Similarity=0.293  Sum_probs=78.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc--------cccceeeecccceeeeCCCCcCcchhH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN--------IDLELTTLSSANHVELSPSDAGFQDRY  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (248)
                      +.+.||+|+||||+++++++ +..+..|.+.++|.++........        +...+...+..+++.+..+..   ...
T Consensus       419 ~~ivG~sGsGKSTl~~ll~g-~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~---~~~  494 (1284)
T 3g5u_A          419 VALVGNSGCGKSTTVQLMQR-LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDV---TMD  494 (1284)
T ss_dssp             EEEECCSSSSHHHHHHHTTT-SSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSC---CHH
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCC---CHH
Confidence            67999999999999999998 778899999999976541111000        000000001111111111100   111


Q ss_pred             HHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          109 VVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       109 ~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      .+.+.++.     +....+           ..+|+            ..+++|+++||| ..+|+.....+.+.++....
T Consensus       495 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~  574 (1284)
T 3g5u_A          495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE  574 (1284)
T ss_dssp             HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC
Confidence            11111111     111111           12332            237899999999 89999998899999987777


Q ss_pred             CeeEEEEecCCCcc
Q 025758          160 SCRLILCCNSSSKV  173 (248)
Q Consensus       160 ~~~~Il~t~~~~~~  173 (248)
                      +.++|++||+...+
T Consensus       575 ~~t~i~itH~l~~i  588 (1284)
T 3g5u_A          575 GRTTIVIAHRLSTV  588 (1284)
T ss_dssp             TSEEEEECSCHHHH
T ss_pred             CCEEEEEecCHHHH
Confidence            77899999987654

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.91  E-value=1.4e-08  Score=103.38  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=57.2

Q ss_pred             CCeeEEEEeCCCCCCH------HHHHHHHHHHHHh-----c-------CCeeEEEEecCCC-----cccHHHhhhhheee
Q 025758          129 RGFKVLVLNEVDKLSR------EAQHSLRRTMEKY-----S-------ASCRLILCCNSSS-----KVTEAIRSRCLNIR  185 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~------~~~~~ll~~le~~-----~-------~~~~~Il~t~~~~-----~~~~~l~sR~~~i~  185 (248)
                      +...|++|||++....      ...+.|...++..     .       .+..+|.++|.+.     .+.+++.+|+.++.
T Consensus      1335 gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~ 1414 (2695)
T 4akg_A         1335 IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILY 1414 (2695)
T ss_dssp             SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEE
T ss_pred             CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEE
Confidence            3456999999875432      3455666666631     1       1345777888873     79999999999999


Q ss_pred             ecCCCHHHHHHHHHHHHHH
Q 025758          186 INSPTEEQIVKVLEFIAKK  204 (248)
Q Consensus       186 ~~~~~~~~~~~il~~~~~~  204 (248)
                      ++.|+.+.+..|+..++..
T Consensus      1415 i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A         1415 LGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp             CCCCTTTHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.91  E-value=1.2e-09  Score=85.21  Aligned_cols=50  Identities=30%  Similarity=0.411  Sum_probs=36.2

Q ss_pred             cCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccce
Q 025758            6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK   67 (248)
Q Consensus         6 ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~   67 (248)
                      ..+|+++.    +..+++.+    ..|.  .+.|.||||+|||||++++++ + .+.+|.+.
T Consensus         4 ~i~pk~~g----~~~~l~~i----~~Ge--~~~liG~nGsGKSTLl~~l~G-l-~p~~G~I~   53 (208)
T 3b85_A            4 VIRPKTLG----QKHYVDAI----DTNT--IVFGLGPAGSGKTYLAMAKAV-Q-ALQSKQVS   53 (208)
T ss_dssp             CCCCCSHH----HHHHHHHH----HHCS--EEEEECCTTSSTTHHHHHHHH-H-HHHTTSCS
T ss_pred             ccccCCHh----HHHHHHhc----cCCC--EEEEECCCCCCHHHHHHHHhc-C-CCcCCeee
Confidence            45777763    44455553    4443  366999999999999999998 5 77777774

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.88  E-value=3.8e-08  Score=79.81  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=21.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      +.|.||||+||||+++++++ +..+..|.+.++|.++
T Consensus         5 v~lvG~nGaGKSTLln~L~g-~~~~~~G~i~~~g~~i   40 (270)
T 3sop_A            5 IMVVGQSGLGKSTLVNTLFK-SQVSRKASSWNREEKI   40 (270)
T ss_dssp             EEEEESSSSSHHHHHHHHHH-HHC------------C
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCCccccCCccc
Confidence            78999999999999999999 5677888888777654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.87  E-value=2e-09  Score=104.66  Aligned_cols=136  Identities=19%  Similarity=0.275  Sum_probs=84.5

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc--------cccceeeecccceeeeCCCCcCcchhH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN--------IDLELTTLSSANHVELSPSDAGFQDRY  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (248)
                      +-++||+|+||||+++++.+ +..+.+|.+.++|.++.......-        +...+-..+..+++.+...... ...+
T Consensus      1108 vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~-~sd~ 1185 (1321)
T 4f4c_A         1108 LALVGPSGCGKSTVVALLER-FYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSS-VTMA 1185 (1321)
T ss_dssp             EEEECSTTSSTTSHHHHHTT-SSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTT-SCHH
T ss_pred             EEEECCCCChHHHHHHHHhc-CccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCC-CCHH
Confidence            67999999999999999998 788999999999986652111100        0000000111222222211111 1122


Q ss_pred             HHHHHHHH-----HHhcCCC-----------cCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          109 VVQEVIKE-----MAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       109 ~~~~~~~~-----~~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      .+.+.++.     +....|.           .+|+            ..+++|++|||+ ..+|......+.+.|++..+
T Consensus      1186 ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~ 1265 (1321)
T 4f4c_A         1186 QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE 1265 (1321)
T ss_dssp             HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS
T ss_pred             HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC
Confidence            23333221     1122222           2221            237899999999 79999999999999998888


Q ss_pred             CeeEEEEecCCCccc
Q 025758          160 SCRLILCCNSSSKVT  174 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~  174 (248)
                      +.++|+++|+...+.
T Consensus      1266 ~~TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A         1266 GRTCIVIAHRLNTVM 1280 (1321)
T ss_dssp             SSEEEEECSSSSTTT
T ss_pred             CCEEEEeccCHHHHH
Confidence            889999999987654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.85  E-value=9.5e-09  Score=82.96  Aligned_cols=60  Identities=18%  Similarity=0.237  Sum_probs=39.8

Q ss_pred             CCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC-cccceeccccee
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-AEKVKVENKTWK   74 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~-~~~~~~~~~~~~   74 (248)
                      +.+++++ |-..+++.+.  +.+|  ..+++.||+|+||||+++++++.+ .+. .|.+..++.++.
T Consensus         5 ~~~l~~l-~~~~vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~-~~~~~G~I~~~g~~i~   65 (261)
T 2eyu_A            5 IPEFKKL-GLPDKVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIEDPIE   65 (261)
T ss_dssp             -CCGGGS-SCCTHHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHH-HHHCCCEEEEEESSCC
T ss_pred             CCChHHC-CCHHHHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhC-CCCCCCEEEEcCCcce
Confidence            4456665 3334555554  3332  238899999999999999999954 444 677777775543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.82  E-value=1.9e-08  Score=84.69  Aligned_cols=141  Identities=14%  Similarity=0.186  Sum_probs=70.6

Q ss_pred             CCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (248)
                      +.+++++ |....++.+   .... ...+++.||+||||||+++++++.+.....+.+-....+.....+....      
T Consensus       103 ~~~l~~l-g~~~~l~~l---~~~~-~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~------  171 (356)
T 3jvv_A          103 VLTMEEL-GMGEVFKRV---SDVP-RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC------  171 (356)
T ss_dssp             CCCTTTT-TCCHHHHHH---HHCS-SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS------
T ss_pred             CCCHHHc-CChHHHHHH---HhCC-CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc------
Confidence            4466665 333343333   2221 1258999999999999999999966433233332222211110100000      


Q ss_pred             ecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEec
Q 025758           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN  168 (248)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~  168 (248)
                        .-.........      .+..+.+....         ..+|+++++||+-  +......+++..+   .+..++++++
T Consensus       172 --~v~q~~~~~~~------~~~~~~La~aL---------~~~PdvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H  229 (356)
T 3jvv_A          172 --LVNQREVHRDT------LGFSEALRSAL---------REDPDIILVGEMR--DLETIRLALTAAE---TGHLVFGTLH  229 (356)
T ss_dssp             --EEEEEEBTTTB------SCHHHHHHHHT---------TSCCSEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEES
T ss_pred             --ceeeeeecccc------CCHHHHHHHHh---------hhCcCEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEc
Confidence              00001111111      12333344333         3478899999995  4555555555543   2345666666


Q ss_pred             CCCcccHHHhhhhhee
Q 025758          169 SSSKVTEAIRSRCLNI  184 (248)
Q Consensus       169 ~~~~~~~~l~sR~~~i  184 (248)
                      ..+..  ...+|+..+
T Consensus       230 ~~~~~--~~~dRli~l  243 (356)
T 3jvv_A          230 TTSAA--KTIDRVVDV  243 (356)
T ss_dssp             CSSHH--HHHHHHHHT
T ss_pred             cChHH--HHHHHHhhh
Confidence            65543  445676443

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.81  E-value=6.3e-08  Score=83.42  Aligned_cols=170  Identities=14%  Similarity=0.147  Sum_probs=98.2

Q ss_pred             cccccHHHHHHHHHHhhcCC-----CCeeEEECCCCCCHHHHHHHH-HHHHcCCCcccceecccceeeccCCccccccee
Q 025758           14 QVIVHQDIAQNLKKLVTEQD-----CPHLLFYGPPGSGKKTLIMAL-LRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~~~~-----~~~ill~Gp~G~GKTtla~~i-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      .++|++.++..+.-.+-+|.     -.|+||.|+||+ ||.+|+.+ ++ +..+.   +...+.     .+..   ..+.
T Consensus       214 pI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~-i~pR~---~ft~g~-----~ss~---~gLt  280 (506)
T 3f8t_A          214 PLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDH-LAPRG---VYVDLR-----RTEL---TDLT  280 (506)
T ss_dssp             CSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHH-TCSSE---EEEEGG-----GCCH---HHHS
T ss_pred             ccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHH-hCCCe---EEecCC-----CCCc---cCce
Confidence            37899999988888876653     226999999999 99999999 76 43221   000010     0000   0000


Q ss_pred             eecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHh---------c
Q 025758           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------S  158 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~---------~  158 (248)
                      ..     + ..+.+.....+    . +.            ..+..+++|||++.+++..+.+|++.||+.         +
T Consensus       281 ~s-----~-r~~tG~~~~~G----~-l~------------LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lp  337 (506)
T 3f8t_A          281 AV-----L-KEDRGWALRAG----A-AV------------LADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALN  337 (506)
T ss_dssp             EE-----E-EESSSEEEEEC----H-HH------------HTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEE
T ss_pred             EE-----E-EcCCCcccCCC----e-eE------------EcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcC
Confidence            00     0 00000000000    0 00            113459999999999999999999999974         2


Q ss_pred             CCeeEEEEecCCC-----------cccHHHhhhhh--eeeecCCC-------------HHHHHHHHHHHH-HHcCCCCCH
Q 025758          159 ASCRLILCCNSSS-----------KVTEAIRSRCL--NIRINSPT-------------EEQIVKVLEFIA-KKEGLQLPS  211 (248)
Q Consensus       159 ~~~~~Il~t~~~~-----------~~~~~l~sR~~--~i~~~~~~-------------~~~~~~il~~~~-~~~~~~~~~  211 (248)
                      ....+|.++|...           .+.+++.||+-  .+..+.|+             .+.+++.+...- ..-...+++
T Consensus       338 arf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~  417 (506)
T 3f8t_A          338 ARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTE  417 (506)
T ss_dssp             CCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECH
T ss_pred             CCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCH
Confidence            3344666666543           78899999993  33334443             334444444322 112556888


Q ss_pred             HHHHHHHH
Q 025758          212 GFATRLAE  219 (248)
Q Consensus       212 ~~~~~l~~  219 (248)
                      ++.++|.+
T Consensus       418 ea~~yI~~  425 (506)
T 3f8t_A          418 EARKRLEH  425 (506)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.81  E-value=5.7e-09  Score=101.55  Aligned_cols=133  Identities=20%  Similarity=0.273  Sum_probs=82.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccC--------CcccccceeeecccceeeeCCCCcCcchhH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG--------SRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (248)
                      +.++||+|+||||+++++.+ +..+..|.+.++|.++.....        .+.+...+...+..+++.+..++.   ..+
T Consensus       447 vaivG~sGsGKSTll~ll~~-~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~---~~~  522 (1321)
T 4f4c_A          447 VALVGSSGCGKSTIISLLLR-YYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGI---TRE  522 (1321)
T ss_dssp             EEEEECSSSCHHHHHHHHTT-SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTC---CHH
T ss_pred             EEEEecCCCcHHHHHHHhcc-ccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccc---hHH
Confidence            67999999999999999998 778999999999975431110        011101111112222332222111   112


Q ss_pred             HHHHHHHH-----HHhcCCC-----------cCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          109 VVQEVIKE-----MAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       109 ~~~~~~~~-----~~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      .+.+.++.     +....|.           .+|+            -.+++|+++||+ ..+|......+.+.+++..+
T Consensus       523 ~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~  602 (1321)
T 4f4c_A          523 EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK  602 (1321)
T ss_dssp             HHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC
Confidence            22222221     1111111           2221            347899999999 89998888889999988877


Q ss_pred             CeeEEEEecCCCcc
Q 025758          160 SCRLILCCNSSSKV  173 (248)
Q Consensus       160 ~~~~Il~t~~~~~~  173 (248)
                      +.++|++||+...+
T Consensus       603 ~~T~iiiaHrls~i  616 (1321)
T 4f4c_A          603 GRTTIIIAHRLSTI  616 (1321)
T ss_dssp             TSEEEEECSCTTTT
T ss_pred             CCEEEEEcccHHHH
Confidence            88899999988643

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.79  E-value=5.6e-08  Score=74.54  Aligned_cols=70  Identities=20%  Similarity=0.302  Sum_probs=42.0

Q ss_pred             CCCeeEEEEeCCCCC---CHHHHHHHHHHHHHhcCCeeEEE--Ee--cCC-CcccHHHhhh--hheeeecCCCHHHHHHH
Q 025758          128 KRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLIL--CC--NSS-SKVTEAIRSR--CLNIRINSPTEEQIVKV  197 (248)
Q Consensus       128 ~~~~~viiiDE~d~l---~~~~~~~ll~~le~~~~~~~~Il--~t--~~~-~~~~~~l~sR--~~~i~~~~~~~~~~~~i  197 (248)
                      ..+++++||||++.+   ++.....+.++++..   ..+|+  ++  ++. ..+.+.++.+  +.++.+..-+.+.+.+.
T Consensus       103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~  179 (189)
T 2i3b_A          103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPD  179 (189)
T ss_dssp             SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHH
T ss_pred             ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHH
Confidence            457889999997655   445566666666642   23443  22  333 2566676664  36777776666665555


Q ss_pred             HHH
Q 025758          198 LEF  200 (248)
Q Consensus       198 l~~  200 (248)
                      +..
T Consensus       180 i~~  182 (189)
T 2i3b_A          180 IVT  182 (189)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.78  E-value=2.3e-08  Score=86.05  Aligned_cols=51  Identities=10%  Similarity=0.259  Sum_probs=41.0

Q ss_pred             eEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       132 ~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +++|+||| ..||+.....+.+.|.+...+..+|++||++ .+. .+.+|..++
T Consensus       317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~-~~~-~~~d~i~~l  368 (415)
T 4aby_A          317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLA-QIA-ARAHHHYKV  368 (415)
T ss_dssp             SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH-HHH-TTCSEEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHH-hhcCeEEEE
Confidence            89999999 6999999999999999887667888898886 443 345665444

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.76  E-value=3.9e-08  Score=77.24  Aligned_cols=133  Identities=21%  Similarity=0.282  Sum_probs=71.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC--CcccceecccceeeccCC-cccccceee------ecc----cceeeeCCCCcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS-RNIDLELTT------LSS----ANHVELSPSDAG  103 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~----~~~~~~~~~~~~  103 (248)
                      +.|.||||+||||+++++++. ..+  ..+.+.+.+.+..  ... ....+-++.      ...    ..++.+.....+
T Consensus        19 i~l~GpsGsGKSTLlk~L~g~-~~p~~~~g~v~~ttr~~~--~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg   95 (219)
T 1s96_A           19 YIVSAPSGAGKSSLIQALLKT-QPLYDTQVSVSHTTRQPR--PGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   95 (219)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH-SCTTTEEECCCEECSCCC--TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             EEEECCCCCCHHHHHHHHhcc-CCCCceEEEEEecCCCCC--cccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCC
Confidence            779999999999999999984 443  3455555544321  000 001011110      011    111222111111


Q ss_pred             cchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758          104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .. .    +.+.....          .++++|+|    +|+.....+.+.+.   ....+++++++...+...+..|.  
T Consensus        96 ~~-~----~~v~~~l~----------~G~illLD----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~Rl~~rG--  151 (219)
T 1s96_A           96 TS-R----EAIEQVLA----------TGVDVFLD----IDWQGAQQIRQKMP---HARSIFILPPSKIELDRRLRGRG--  151 (219)
T ss_dssp             EE-H----HHHHHHHT----------TTCEEEEE----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHHHHHTTS--
T ss_pred             CC-H----HHHHHHHh----------cCCeEEEE----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHHHHHHcC--
Confidence            11 1    11222222          24799999    88898888888776   34556666666665555555554  


Q ss_pred             eeecCCCHHHHHHHHHH
Q 025758          184 IRINSPTEEQIVKVLEF  200 (248)
Q Consensus       184 i~~~~~~~~~~~~il~~  200 (248)
                          .-+.+++...+.+
T Consensus       152 ----~~~~e~i~~rl~~  164 (219)
T 1s96_A          152 ----QDSEEVIAKRMAQ  164 (219)
T ss_dssp             ----CSCHHHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHH
Confidence                2355666666654

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.71  E-value=6.3e-07  Score=91.61  Aligned_cols=167  Identities=16%  Similarity=0.226  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCC
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (248)
                      +....+..++..+.  +.++.||+|||||++++.+|+.+..+-                                +.+++
T Consensus       633 r~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~lg~~~--------------------------------v~~nc  678 (2695)
T 4akg_A          633 IGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNLGRVV--------------------------------VVFNC  678 (2695)
T ss_dssp             HHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTTTCCC--------------------------------EEEET
T ss_pred             HHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHhCCcE--------------------------------EEEEC
Confidence            35555666665443  356999999999999999999652211                                22222


Q ss_pred             CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHH-------HHhc-------------C
Q 025758          100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM-------EKYS-------------A  159 (248)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~l-------e~~~-------------~  159 (248)
                      .+. . ....+...+..+..          ....+++||++.++++....+...+       .+..             .
T Consensus       679 ~e~-l-d~~~lg~~~~g~~~----------~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~  746 (2695)
T 4akg_A          679 DDS-F-DYQVLSRLLVGITQ----------IGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSP  746 (2695)
T ss_dssp             TSS-C-CHHHHHHHHHHHHH----------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCT
T ss_pred             CCC-C-ChhHhhHHHHHHHh----------cCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCC
Confidence            211 1 11123444544443          2358999999999998777663333       2211             1


Q ss_pred             CeeEEEEecC----CCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cc
Q 025758          160 SCRLILCCNS----SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK-------------SN  222 (248)
Q Consensus       160 ~~~~Il~t~~----~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~-------------~~  222 (248)
                      ...+++|.|.    ..++++++++||+.+.+..|+.+.+.+++..   ..|+...+.....++..             .+
T Consensus       747 ~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hyd  823 (2695)
T 4akg_A          747 HTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYH  823 (2695)
T ss_dssp             TCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCC
T ss_pred             CceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCccc
Confidence            1224445542    2479999999999999999999998888653   34555444444333321             12


Q ss_pred             ccHHHHHHHHHHH
Q 025758          223 RSLRRAILSFETC  235 (248)
Q Consensus       223 g~~r~~~~~l~~~  235 (248)
                      -.+|.+...|..+
T Consensus       824 fglRalksvL~~a  836 (2695)
T 4akg_A          824 FGLRTLKGVLRNC  836 (2695)
T ss_dssp             CSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH
Confidence            3567776666544

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.70  E-value=4.2e-08  Score=88.39  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=65.8

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHHHcCC-CcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHH
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE  112 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (248)
                      +|.+.+.||+|+||||+++++++ +..| ++|.+..+|..+........       ......+++.+......+..++.+
T Consensus        45 lp~iaIvG~nGsGKSTLL~~I~G-l~~P~~sG~vt~~g~~i~~~~~~~~-------~~~~~~i~~v~Q~~~l~~~~tv~e  116 (608)
T 3szr_A           45 LPAIAVIGDQSSGKSSVLEALSG-VALPRGSGIVTRCPLVLKLKKLVNE-------DKWRGKVSYQDYEIEISDASEVEK  116 (608)
T ss_dssp             CCCEECCCCTTSCHHHHHHHHHS-CC-------CCCSCEEEEEEECSSS-------SCCEEEESCC---CCCCCHHHHHT
T ss_pred             CCeEEEECCCCChHHHHHHHHhC-CCCCCCCCeEEEcCEEEEEecCCcc-------ccceeEEeeecccccCCCHHHHHH
Confidence            45699999999999999999998 5556 78999888876431111000       011123555555555555556666


Q ss_pred             HHHHHHhc---CCCcCC---------CCCCeeEEEEeCC-------CCCCHHHHHHHHHHHHHh
Q 025758          113 VIKEMAKN---RPIDTK---------GKRGFKVLVLNEV-------DKLSREAQHSLRRTMEKY  157 (248)
Q Consensus       113 ~~~~~~~~---~~~~~~---------~~~~~~viiiDE~-------d~l~~~~~~~ll~~le~~  157 (248)
                      .+......   .....+         ....|.++++|||       ..+++.....+..++.++
T Consensus       117 ~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~  180 (608)
T 3szr_A          117 EINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKY  180 (608)
T ss_dssp             THHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHH
Confidence            55443211   111111         1235889999999       355666677777777775

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.68  E-value=1e-08  Score=87.80  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=41.4

Q ss_pred             cHHHHHHHHHHhhcCC-----------------C-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758           18 HQDIAQNLKKLVTEQD-----------------C-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~-----------------~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~   72 (248)
                      .+.+++.+...++.|.                 . ..+.|.||||+||||+++++++ +..+..|.+.+++.+
T Consensus        35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G-l~~p~~GsI~~~g~~  106 (413)
T 1tq4_A           35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG-IGNEEEGAAKTGVVE  106 (413)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT-CCTTSTTSCCCCC--
T ss_pred             CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC-CCCccCceEEECCee
Confidence            4556777777777766                 1 2478999999999999999998 677788888777654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.68  E-value=6.4e-08  Score=90.61  Aligned_cols=53  Identities=17%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhe
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ..+|+++|+||| .+||+.....+.++|.+  .+..+|++||+. .....+.+|+..
T Consensus       564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl-~~l~~~adrii~  617 (986)
T 2iw3_A          564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDS-VFLDNVCEYIIN  617 (986)
T ss_dssp             HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCH-HHHHHHCSEEEE
T ss_pred             hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCH-HHHHHhCCEEEE
Confidence            347899999999 89999999999999988  456677777764 444567777643

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.68  E-value=2.4e-08  Score=78.64  Aligned_cols=22  Identities=36%  Similarity=0.422  Sum_probs=20.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.|.||||+||||+++.+++.+
T Consensus        28 ~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           28 TEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999844

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.62  E-value=3.8e-08  Score=77.46  Aligned_cols=23  Identities=22%  Similarity=0.572  Sum_probs=20.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +++.||||+||||+++.++..+.
T Consensus        26 ~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           26 IALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999997553

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.62  E-value=2.2e-08  Score=88.80  Aligned_cols=163  Identities=11%  Similarity=0.114  Sum_probs=84.0

Q ss_pred             cccccHHHHHHHHH-HhhcCCCCeeEEECCCCCCHHHHHHH--HHHHHcCCCcccceecccceeeccCCcccccce--ee
Q 025758           14 QVIVHQDIAQNLKK-LVTEQDCPHLLFYGPPGSGKKTLIMA--LLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--TT   88 (248)
Q Consensus        14 ~lig~~~~~~~l~~-~~~~~~~~~ill~Gp~G~GKTtla~~--ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   88 (248)
                      .+.+...+++.+.. .+..|.  .++|.||||+||||+++.  +++ +..++.+.+.+++.+.............+  +.
T Consensus        20 ~~~~g~~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~G-l~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~   96 (525)
T 1tf7_A           20 KMRTMIEGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNG-IIEFDEPGVFVTFEETPQDIIKNARSFGWDLAK   96 (525)
T ss_dssp             EECCCCTTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHH
T ss_pred             cccCCchhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHH-HHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHH
Confidence            33434445555555 554443  377999999999999999  456 55556788888775421100000000000  00


Q ss_pred             ecc-cceeeeCCC----CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCC------CHHHHHHHHHHHHHh
Q 025758           89 LSS-ANHVELSPS----DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL------SREAQHSLRRTMEKY  157 (248)
Q Consensus        89 ~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l------~~~~~~~ll~~le~~  157 (248)
                      ... .....+...    .........+.+.++......    + ..++.+++|||+..+      ++..+..+++++...
T Consensus        97 ~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L----S-~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l  171 (525)
T 1tf7_A           97 LVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAI----Q-KYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARL  171 (525)
T ss_dssp             HHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHH----H-HHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHH
T ss_pred             hhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHH----H-HcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            000 000111000    000111112222222222211    1 135679999999542      456777788888766


Q ss_pred             cC-CeeEEEEecCCCcc--------cHHHhhhhhee
Q 025758          158 SA-SCRLILCCNSSSKV--------TEAIRSRCLNI  184 (248)
Q Consensus       158 ~~-~~~~Il~t~~~~~~--------~~~l~sR~~~i  184 (248)
                      .. +..+|+++++...+        ...+.+|+.++
T Consensus       172 ~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L  207 (525)
T 1tf7_A          172 KQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVIL  207 (525)
T ss_dssp             HHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEE
T ss_pred             HHCCCEEEEEecCCCCccccccccceeeeeeEEEEE
Confidence            43 46788888888765        34556665443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.58  E-value=3.1e-08  Score=92.75  Aligned_cols=54  Identities=17%  Similarity=0.327  Sum_probs=40.9

Q ss_pred             CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhhee
Q 025758          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       128 ~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ..+|+++|+||| .+||+.....+.+.+.+.  ...+|++||+.+. ...+.+|+..+
T Consensus       917 ~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~-v~~l~DrVivL  971 (986)
T 2iw3_A          917 WQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEF-TKNLTEEVWAV  971 (986)
T ss_dssp             TTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHH-HTTTCCEEECC
T ss_pred             HhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHH-HHHhCCEEEEE
Confidence            558999999999 899999999999999876  3467777777443 33556665444

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=98.58  E-value=4.4e-08  Score=75.72  Aligned_cols=60  Identities=8%  Similarity=0.103  Sum_probs=41.1

Q ss_pred             CeeEEEEeCCCCCC--H-HH--HHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhh-heeeecCC
Q 025758          130 GFKVLVLNEVDKLS--R-EA--QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC-LNIRINSP  189 (248)
Q Consensus       130 ~~~viiiDE~d~l~--~-~~--~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~-~~i~~~~~  189 (248)
                      ...||+|||++.+-  . ..  ...++..++.... ...+|++++.+..+..++++|+ ..+++.++
T Consensus        87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~  153 (199)
T 2r2a_A           87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN  153 (199)
T ss_dssp             TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred             CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence            46799999998772  1 11  1235555554433 3468999999889999999998 46666653

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.54  E-value=1.4e-06  Score=78.11  Aligned_cols=199  Identities=13%  Similarity=0.142  Sum_probs=101.1

Q ss_pred             CCCCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHc--CCCcccceecccceeeccCCcccc
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~--~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      -|.....++|.+..++.|..++..  +....+.++||.|+||||+|..++....  .....    ++.-|......... 
T Consensus       119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~----~~v~wv~~~~~~~~-  193 (591)
T 1z6t_A          119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFP----GGVHWVSVGKQDKS-  193 (591)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCT----TCEEEEEEESCCHH-
T ss_pred             CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCC----CceEEEECCCCchH-
Confidence            366778899999999999999864  2333489999999999999998874210  00000    01111100000000 


Q ss_pred             cceeee-cccceeee--CCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           84 LELTTL-SSANHVEL--SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        84 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                      .-...+ .....+..  ..............+.+......       ...+-+|+||+++..  .       .++....+
T Consensus       194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~LLVLDdv~~~--~-------~l~~l~~~  257 (591)
T 1z6t_A          194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR-------KHPRSLLILDDVWDS--W-------VLKAFDSQ  257 (591)
T ss_dssp             HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH-------TCTTCEEEEEEECCH--H-------HHHTTCSS
T ss_pred             HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc-------CCCCeEEEEeCCCCH--H-------HHHHhcCC
Confidence            000000 00000000  00011111111222223322221       113569999999641  1       23334555


Q ss_pred             eeEEEEecCCCcccHHHhhhhheee-ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHH
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIR-INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI  229 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~-~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~  229 (248)
                      ..+|+||.+.. +..........+. ..+++.++..+++...+... ..-.++....|++.++|.+-.+.
T Consensus       258 ~~ilvTsR~~~-~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~  325 (591)
T 1z6t_A          258 CQILLTTRDKS-VTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVS  325 (591)
T ss_dssp             CEEEEEESCGG-GGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHH
T ss_pred             CeEEEECCCcH-HHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHH
Confidence            67777766543 2222112222222 25889999999998776431 11124678899999998765443

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.51  E-value=2.2e-07  Score=87.01  Aligned_cols=49  Identities=12%  Similarity=0.151  Sum_probs=33.4

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHH-HHHHHHhcC--CeeEEEEecCCCcccHHHhhh
Q 025758          130 GFKVLVLNEV-DKLSREAQHSL-RRTMEKYSA--SCRLILCCNSSSKVTEAIRSR  180 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~l-l~~le~~~~--~~~~Il~t~~~~~~~~~l~sR  180 (248)
                      ++.++||||+ .++++.....+ ..+++....  +..+|++||+. ++. .+.+|
T Consensus       741 ~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~-el~-~lad~  793 (934)
T 3thx_A          741 KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH-ELT-ALANQ  793 (934)
T ss_dssp             TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG-GGG-GGGGT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH-HHH-HHhcc
Confidence            6789999999 78998777666 555665532  46777777774 333 34444

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.49  E-value=5.3e-07  Score=82.24  Aligned_cols=53  Identities=17%  Similarity=0.201  Sum_probs=39.4

Q ss_pred             Cee--EEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          130 GFK--VLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       130 ~~~--viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +|+  ++|+||| ..||+.....+.+++.+... +..+|++||+.. +.. ..+|+.++
T Consensus       220 ~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~-~~d~ii~l  276 (670)
T 3ux8_A          220 RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TML-AADYLIDI  276 (670)
T ss_dssp             CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH-HHH-HCSEEEEE
T ss_pred             CCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHh-hCCEEEEe
Confidence            555  9999999 89999999999999987743 467888888865 332 35565444

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.47  E-value=3.5e-07  Score=76.05  Aligned_cols=51  Identities=18%  Similarity=0.227  Sum_probs=40.4

Q ss_pred             CCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ..++++++||| ..||+.....+++++.+...+..+|++|++. .+. .+.+|+
T Consensus       240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~-~~~-~~~d~~  291 (322)
T 1e69_A          240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNK-IVM-EAADLL  291 (322)
T ss_dssp             SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCT-TGG-GGCSEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCH-HHH-hhCceE
Confidence            46789999999 7899999999999998876556788888884 333 456766

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.46  E-value=2.1e-06  Score=88.51  Aligned_cols=109  Identities=13%  Similarity=0.137  Sum_probs=72.1

Q ss_pred             CCeeEEEEeCCCCCCH------HHHHHHHHHHHHh------------cCCeeEEEEecCC-----CcccHHHhhhhheee
Q 025758          129 RGFKVLVLNEVDKLSR------EAQHSLRRTMEKY------------SASCRLILCCNSS-----SKVTEAIRSRCLNIR  185 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~------~~~~~ll~~le~~------------~~~~~~Il~t~~~-----~~~~~~l~sR~~~i~  185 (248)
                      +..-|++|||+++-.+      .....|..+++..            ..+..+|.++|.+     ..+.+.+.+|+.++.
T Consensus      1373 Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~ 1452 (3245)
T 3vkg_A         1373 GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL 1452 (3245)
T ss_dssp             TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEE
T ss_pred             CceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEE
Confidence            4567999999976543      3456666777631            1234477777766     358999999999999


Q ss_pred             ecCCCHHHHHHHHHHHHHHc-CC-----CCCHHHHHHHHHHc---------------cccHHHHHHHHHHHhh
Q 025758          186 INSPTEEQIVKVLEFIAKKE-GL-----QLPSGFATRLAEKS---------------NRSLRRAILSFETCRV  237 (248)
Q Consensus       186 ~~~~~~~~~~~il~~~~~~~-~~-----~~~~~~~~~l~~~~---------------~g~~r~~~~~l~~~~~  237 (248)
                      ++.|+.+.+..|...++..- +.     .+.+..+...++..               --|+|++.+.++-+..
T Consensus      1453 i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~ 1525 (3245)
T 3vkg_A         1453 VDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLE 1525 (3245)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHH
Confidence            99999999999987765531 11     11133333333221               2388998888877664

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.45  E-value=2.1e-06  Score=76.48  Aligned_cols=190  Identities=14%  Similarity=0.144  Sum_probs=94.0

Q ss_pred             cccHHHHHHHHHHhhcC---CCCeeEEECCCCCCHHHHHHHHHHH---HcCCCcccceecccceeeccCCcccccceeee
Q 025758           16 IVHQDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQ---VFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~---~~~~ill~Gp~G~GKTtla~~ia~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (248)
                      +|.+..++.|..++..+   ....+.++|+.|+||||+|+.++..   -.....     ++.-|................
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-----~~~~wv~vs~~~~~~~~~~~~  205 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-----DSIVWLKDSGTAPKSTFDLFT  205 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-----SEEEEEECCCCSTTHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC-----CcEEEEEECCCCCCCHHHHHH
Confidence            59999999998888644   2334899999999999999999952   111111     122221001000000000000


Q ss_pred             cccceeeeC-----CCCcCcchhHHHHHHHHHHHhcCCCcCCCCCC-eeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeE
Q 025758           90 SSANHVELS-----PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRL  163 (248)
Q Consensus        90 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~  163 (248)
                      .....++..     ...............+.....         +. .-+|+||+++..+.  . .+    ... .+..+
T Consensus       206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~---------~~kr~LlVLDdv~~~~~--~-~~----~~~-~gs~i  268 (549)
T 2a5y_B          206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALI---------DRPNTLFVFDDVVQEET--I-RW----AQE-LRLRC  268 (549)
T ss_dssp             HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHT---------TSTTEEEEEEEECCHHH--H-HH----HHH-TTCEE
T ss_pred             HHHHHHhcCcccccccccccccHHHHHHHHHHHHc---------CCCcEEEEEECCCCchh--h-cc----ccc-CCCEE
Confidence            000000000     000000011111222222221         22 56999999975221  1 11    111 45667


Q ss_pred             EEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccccHHHH
Q 025758          164 ILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEKSNRSLRRA  228 (248)
Q Consensus       164 Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~  228 (248)
                      |+||.+. .+..........+.+++++.++..+++.+.+..... .-.++....|++.|+|.+=.+
T Consensus       269 lvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl  333 (549)
T 2a5y_B          269 LVTTRDV-EISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATL  333 (549)
T ss_dssp             EEEESBG-GGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred             EEEcCCH-HHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHH
Confidence            7776653 333222112256899999999999988876432211 111345778888888865433

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.44  E-value=5.5e-07  Score=76.30  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=26.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      .++++||+|+||||+++++++.+.....|.+...+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e  172 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE  172 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence            38999999999999999999955332256654433

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.44  E-value=3.8e-07  Score=69.57  Aligned_cols=49  Identities=8%  Similarity=0.118  Sum_probs=34.2

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC------cccHHHhhhh
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEAIRSRC  181 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~------~~~~~l~sR~  181 (248)
                      ++.+++|||++.++++....+..+.++   +..+|++..+..      ...+.+.+++
T Consensus        76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~a  130 (184)
T 2orw_A           76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLA  130 (184)
T ss_dssp             TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHC
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHh
Confidence            578999999999977655555555553   566777765333      5666777777

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.44  E-value=4.8e-07  Score=74.18  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=20.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ++|.||||+||||+++.+++.+.
T Consensus        38 ~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           38 IMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            77999999999999999998653

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.43  E-value=4.9e-07  Score=76.33  Aligned_cols=46  Identities=26%  Similarity=0.387  Sum_probs=37.9

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~   71 (248)
                      +.+...++.|.  .+++.||+|+||||+++++++ +..+..|.+.+++.
T Consensus       166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~-~~~~~~g~I~ie~~  211 (361)
T 2gza_A          166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQ-EIPFDQRLITIEDV  211 (361)
T ss_dssp             HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHT-TSCTTSCEEEEESS
T ss_pred             HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHh-cCCCCceEEEECCc
Confidence            67777777764  477999999999999999998 66778888888763

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.42  E-value=1.4e-06  Score=68.42  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=20.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      ++++||+|+||||++.-++..+..
T Consensus        15 ~litG~mGsGKTT~ll~~~~r~~~   38 (223)
T 2b8t_A           15 EFITGPMFAGKTAELIRRLHRLEY   38 (223)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHh
Confidence            889999999999999888876643

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.41  E-value=6.7e-07  Score=69.73  Aligned_cols=20  Identities=40%  Similarity=0.486  Sum_probs=19.3

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.||||+||||+++.++.
T Consensus        23 ~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           23 TQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999997

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.40  E-value=3.4e-07  Score=79.58  Aligned_cols=43  Identities=16%  Similarity=0.164  Sum_probs=32.1

Q ss_pred             HHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcc-c-ceecc
Q 025758           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-K-VKVEN   70 (248)
Q Consensus        25 l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~-~-~~~~~   70 (248)
                      ++..+..|  ..+.|.||+|+||||+++++++ +..+..| . +.+++
T Consensus       131 vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~G-l~~p~~G~~pI~vdg  175 (460)
T 2npi_A          131 IRMSNFEG--PRVVIVGGSQTGKTSLSRTLCS-YALKFNAYQPLYINL  175 (460)
T ss_dssp             HHHHSSSC--CCEEEEESTTSSHHHHHHHHHH-TTHHHHCCCCEEEEC
T ss_pred             CceEeCCC--CEEEEECCCCCCHHHHHHHHhC-cccccCCceeEEEcC
Confidence            34444433  3477999999999999999998 5566667 6 76665

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.39  E-value=1.3e-05  Score=83.01  Aligned_cols=169  Identities=14%  Similarity=0.193  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeC
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (248)
                      ++..-.|..++..+...  .+.||+|||||++++.+|+.+..+-                                +.+.
T Consensus       591 drcy~tl~~Al~~~~gg--~~~GPaGtGKTet~k~La~~lgr~~--------------------------------~vfn  636 (3245)
T 3vkg_A          591 DRCYLTLTQALESRMGG--NPFGPAGTGKTETVKALGSQLGRFV--------------------------------LVFC  636 (3245)
T ss_dssp             HHHHHHHHHHHHTTCEE--EEECSTTSSHHHHHHHHHHHTTCCE--------------------------------EEEE
T ss_pred             HHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHhCCeE--------------------------------EEEe
Confidence            34555666666554333  4999999999999999999763211                                2222


Q ss_pred             CCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHH-------h--------------
Q 025758           99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK-------Y--------------  157 (248)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~-------~--------------  157 (248)
                      +... . +.......+..++.          ...-.++||+++++.+....+...+..       .              
T Consensus       637 C~~~-~-d~~~~g~i~~G~~~----------~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l  704 (3245)
T 3vkg_A          637 CDEG-F-DLQAMSRIFVGLCQ----------CGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISL  704 (3245)
T ss_dssp             CSSC-C-CHHHHHHHHHHHHH----------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEEC
T ss_pred             CCCC-C-CHHHHHHHHhhHhh----------cCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEee
Confidence            2211 1 11123444555554          234679999999998876665554431       1              


Q ss_pred             cCCeeEEEEecC----CCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------
Q 025758          158 SASCRLILCCNS----SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK-------------  220 (248)
Q Consensus       158 ~~~~~~Il~t~~----~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~-------------  220 (248)
                      ..+..+++|.|.    ..++++++++||+.+.+..|+.+.+.+++.   -.+|+.-.......++..             
T Consensus       705 ~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~H  781 (3245)
T 3vkg_A          705 HQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSH  781 (3245)
T ss_dssp             CTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             cCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            011234555542    247999999999999999999999999876   566776444433333321             


Q ss_pred             ccccHHHHHHHHHHHh
Q 025758          221 SNRSLRRAILSFETCR  236 (248)
Q Consensus       221 ~~g~~r~~~~~l~~~~  236 (248)
                      ++=.+|.+...|..+.
T Consensus       782 YDfGLRalKsVL~~AG  797 (3245)
T 3vkg_A          782 YDFGLRALKSVLVSAG  797 (3245)
T ss_dssp             CCCSHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHH
Confidence            1224777777766554

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.38  E-value=8e-07  Score=83.10  Aligned_cols=42  Identities=12%  Similarity=0.211  Sum_probs=31.3

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHH-HHHHHhc--CCeeEEEEecCCC
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLR-RTMEKYS--ASCRLILCCNSSS  171 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll-~~le~~~--~~~~~Il~t~~~~  171 (248)
                      ++.++|+||| .++++.....+. .+++...  .+..+|++||+.+
T Consensus       752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e  797 (918)
T 3thx_B          752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP  797 (918)
T ss_dssp             TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence            6789999999 799998777776 6666652  3566777777753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.36  E-value=5.1e-07  Score=71.53  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=20.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++|.||||+||||+++.++...
T Consensus        27 ~~i~G~~GsGKTtl~~~l~~~~   48 (243)
T 1n0w_A           27 TEMFGEFRTGKTQICHTLAVTC   48 (243)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            8899999999999999999853

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.34  E-value=3e-07  Score=68.39  Aligned_cols=51  Identities=24%  Similarity=0.184  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~   74 (248)
                      .+...+...+.+|.  .+.|.||+|+||||+++++++.+  +..|.+.+.+..+.
T Consensus        21 ~~l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~   71 (158)
T 1htw_A           21 FAEILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLV   71 (158)
T ss_dssp             HHHHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCE
T ss_pred             HHHhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeee
Confidence            34444444444442  37799999999999999999954  77888888776543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.32  E-value=1.1e-06  Score=73.80  Aligned_cols=22  Identities=36%  Similarity=0.422  Sum_probs=20.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.|+||||+||||+++.++..+
T Consensus       134 ~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          134 TEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999999854

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.32  E-value=5.6e-07  Score=82.06  Aligned_cols=53  Identities=9%  Similarity=0.176  Sum_probs=40.5

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +|+++++||| ..||+.....+++++.+... +..+|++||+...+  ...+|+.++
T Consensus       564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~--~~~d~i~~l  618 (670)
T 3ux8_A          564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI--KTADYIIDL  618 (670)
T ss_dssp             SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HhCCEEEEe
Confidence            4689999999 89999999999999988753 46788888887543  235665544

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.29  E-value=1.2e-06  Score=80.66  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|+||||+||||+++.+++..
T Consensus       578 i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          578 LVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHhhh
Confidence            38899999999999999999854

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.26  E-value=2.2e-06  Score=79.27  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|+||||+||||+++.+++..
T Consensus       609 i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          609 MLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            38899999999999999999853

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.25  E-value=4.8e-05  Score=73.56  Aligned_cols=197  Identities=13%  Similarity=0.175  Sum_probs=99.6

Q ss_pred             CCCCcccccccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHH--cCCCcccceecccceeeccCCcccc
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQV--FGPGAEKVKVENKTWKIDAGSRNID   83 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l--~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
                      -|.....++|.+..++.|..++..  +....+.++|+.|+||||||+.++...  ......    ++.-|..........
T Consensus       119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~  194 (1249)
T 3sfz_A          119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFS----GGVHWVSIGKQDKSG  194 (1249)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTST----TCEEEEECCSCCHHH
T ss_pred             CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCC----CeEEEEEECCcCchH
Confidence            355667899999999999998853  233338899999999999998877532  010000    000011000000000


Q ss_pred             cceeeecccceeeeCC--CCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758           84 LELTTLSSANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (248)
Q Consensus        84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~  161 (248)
                      ...........+....  .......   ..+....+.....    .....-+|+||+++..  .       .++....+.
T Consensus       195 ~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~l~----~~~~~~LlvlDd~~~~--~-------~~~~~~~~~  258 (1249)
T 3sfz_A          195 LLMKLQNLCMRLDQEESFSQRLPLN---IEEAKDRLRVLML----RKHPRSLLILDDVWDP--W-------VLKAFDNQC  258 (1249)
T ss_dssp             HHHHHHHHHHHHTTTCTTCSSCCSS---HHHHHHHHHHHTS----SSSCSCEEEEESCCCH--H-------HHTTTCSSC
T ss_pred             HHHHHHHHHHHhhhhcccccCCCCC---HHHHHHHHHHHHh----ccCCCEEEEEecCCCH--H-------HHHhhcCCC
Confidence            0000000000000000  0000011   1222222221111    1223569999999742  1       233345556


Q ss_pred             eEEEEecCCCcccHHHhhhhheeeecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHH
Q 025758          162 RLILCCNSSSKVTEAIRSRCLNIRINS-PTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR  226 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~-~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r  226 (248)
                      ++|+||.+.. +..........+.+.+ ++.++..+++...+.... .-.++....|++.++|.+=
T Consensus       259 ~ilvTtR~~~-~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~glPL  322 (1249)
T 3sfz_A          259 QILLTTRDKS-VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAHSIIKECKGSPL  322 (1249)
T ss_dssp             EEEEEESSTT-TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-TTCCTHHHHHHHHTTTCHH
T ss_pred             EEEEEcCCHH-HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-hhCcHHHHHHHHHhCCCHH
Confidence            7777776543 2222223335677775 899998888887663322 2224568889999988543

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.21  E-value=1.6e-05  Score=67.21  Aligned_cols=54  Identities=11%  Similarity=0.204  Sum_probs=41.0

Q ss_pred             CCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      .+|+++|+||| ..||+.....+++++.+... +..+|++||+...  ....+|+.++
T Consensus       302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~--~~~~d~~~~l  357 (365)
T 3qf7_A          302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF--SEAFDRKLRI  357 (365)
T ss_dssp             TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH--HTTCSCEEEE
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH--HHhCCEEEEE
Confidence            58899999999 89999999999999988754 3567788887643  2344555443

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.21  E-value=9.1e-07  Score=78.41  Aligned_cols=123  Identities=11%  Similarity=0.098  Sum_probs=60.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCccc-ceecccceeeccCCccccccee--eecccceeeeCCCCc-CcchhHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGSRNIDLELT--TLSSANHVELSPSDA-GFQDRYVVQE  112 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~  112 (248)
                      +++.||||+||||+++.+++.+ ++..+. +.+.+...............+.  .........+..... ..+..+..+.
T Consensus       284 ~~i~G~~GsGKSTLl~~l~g~~-~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~  362 (525)
T 1tf7_A          284 ILATGATGTGKTLLVSRFVENA-CANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQI  362 (525)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH-HTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH-HhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHHH
Confidence            8899999999999999999854 433221 2222211000000000000000  000000112211111 1222222333


Q ss_pred             HHHHHHhcCCCcCCCCCCeeEEEEeCC-CCCCHH-----HHHHHHHHHHHhc-CCeeEEEEecCC
Q 025758          113 VIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSRE-----AQHSLRRTMEKYS-ASCRLILCCNSS  170 (248)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~-----~~~~ll~~le~~~-~~~~~Il~t~~~  170 (248)
                      .+....         ..++++++|| + ..++..     ....+.+++.... .+..+|+++++.
T Consensus       363 ~~a~~l---------~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          363 IKSEIN---------DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             HHHHHH---------TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             HHHHHH---------hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            233222         2367899999 7 667665     6777777776654 346778887776

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.21  E-value=9.5e-06  Score=67.44  Aligned_cols=36  Identities=28%  Similarity=0.307  Sum_probs=30.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      +.|.||||+||||+++.+++. ..+.++.+.+.+.+.
T Consensus       132 i~lvG~nGaGKTTll~~Lag~-l~~~~g~V~l~g~D~  167 (328)
T 3e70_C          132 IMFVGFNGSGKTTTIAKLANW-LKNHGFSVVIAASDT  167 (328)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEEEECC
T ss_pred             EEEECCCCCCHHHHHHHHHHH-HHhcCCEEEEEeecc
Confidence            899999999999999999984 567778887776543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.18  E-value=1.2e-05  Score=66.15  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ++|+||||+|||++|..++..
T Consensus       126 iLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          126 VIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEECSCSSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHh
Confidence            799999999999999999974

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.17  E-value=5.7e-06  Score=68.07  Aligned_cols=37  Identities=30%  Similarity=0.243  Sum_probs=31.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      .+.|.||+|+||||+++.+|+. ..+.+|.+.+.+.+.
T Consensus       104 vi~lvG~nGsGKTTll~~Lagl-l~~~~g~V~l~g~D~  140 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKLGRY-YQNLGKKVMFCAGDT  140 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH-HHTTTCCEEEECCCC
T ss_pred             EEEEECCCCCcHHHHHHHHHHH-HHhcCCEEEEEeecC
Confidence            3889999999999999999984 567788888877654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.16  E-value=2.3e-06  Score=69.56  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ++|+||||+||||+++.++..+.
T Consensus        33 ~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           33 GALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHh
Confidence            78999999999999999998553

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.15  E-value=1.9e-06  Score=74.43  Aligned_cols=140  Identities=13%  Similarity=0.079  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc---ceeeccCCcccccceeeeccccee
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK---TWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      ..+++.+ ..+..|  ..+.|.||+|+||||++++|++ +..++.|.+.++|.   .........     .........+
T Consensus       145 ~~vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag-~~~~~~G~i~~~G~r~~ev~~~~~~~-----~~~~~l~r~i  215 (438)
T 2dpy_A          145 VRAINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMAR-YTRADVIVVGLIGERGREVKDFIENI-----LGPDGRARSV  215 (438)
T ss_dssp             CHHHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHH-HSCCSEEEEEEESCCHHHHHHHHHTT-----THHHHHHTEE
T ss_pred             ceEEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhc-ccCCCeEEEEEeceecHHHHHHHHhh-----ccccccCceE
Confidence            4566666 555444  3477999999999999999999 56777888877775   221000000     0000011234


Q ss_pred             eeCCC-CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCC--------------------CCCCHHHHHHHHHHH
Q 025758           96 ELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--------------------DKLSREAQHSLRRTM  154 (248)
Q Consensus        96 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~--------------------d~l~~~~~~~ll~~l  154 (248)
                      .+.+. +.....+.++.+.+...++....    ....-..++|.+                    ..+++.....+.+++
T Consensus       216 ~~v~q~~~~~~~~~~v~~~~~~~ae~~~~----~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll  291 (438)
T 2dpy_A          216 VIAAPADVSPLLRMQGAAYATRIAEDFRD----RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALV  291 (438)
T ss_dssp             EEEECTTSCHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHHh----CCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHH
Confidence            44443 23334455555544433322111    122334566653                    456777788899999


Q ss_pred             HHhcC---C-e------eEEEEecCCC
Q 025758          155 EKYSA---S-C------RLILCCNSSS  171 (248)
Q Consensus       155 e~~~~---~-~------~~Il~t~~~~  171 (248)
                      ++...   . .      .+++++|+..
T Consensus       292 ~r~~~~~~~~GsiT~~~tVlv~tHdl~  318 (438)
T 2dpy_A          292 ERAGNGIHGGGSITAFYTVLTEGDDQQ  318 (438)
T ss_dssp             TTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred             HHHHhccCCCCcccceeEEEEeCCCcc
Confidence            88744   1 3      4555566654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.14  E-value=3.2e-06  Score=64.41  Aligned_cols=32  Identities=28%  Similarity=0.378  Sum_probs=24.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~   72 (248)
                      ++|.||||+||||+++.+++.    ..+.+.+++..
T Consensus         5 i~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~   36 (189)
T 2bdt_A            5 YIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDI   36 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHH
T ss_pred             EEEECCCCCcHHHHHHHHhcc----cCCeEEEcccc
Confidence            789999999999999999973    23445555543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.12  E-value=2.5e-06  Score=72.80  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.|+||||+||||+++.++-..
T Consensus       181 ~~I~G~sGsGKTTLl~~la~~~  202 (400)
T 3lda_A          181 TELFGEFRTGKSQLCHTLAVTC  202 (400)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCChHHHHHHHHHHh
Confidence            8999999999999999776433

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=98.12  E-value=3.3e-05  Score=64.54  Aligned_cols=55  Identities=22%  Similarity=0.387  Sum_probs=41.8

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhheeee
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNIRI  186 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~i~~  186 (248)
                      +|+++++||| .+||+.....+...+.+.... ..+|++||+ ..+. .+.+|+..+..
T Consensus       272 ~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~-~~~~-~~~d~~~~l~~  328 (339)
T 3qkt_A          272 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EELK-DAADHVIRISL  328 (339)
T ss_dssp             TTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESC-GGGG-GGCSEEEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECh-HHHH-HhCCEEEEEEe
Confidence            6899999999 899999999999999886433 467778877 4443 56677655544

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.07  E-value=4.8e-06  Score=69.87  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=27.4

Q ss_pred             HHHHHHhhcCCCC-e--eEEECCCCCCHHHHHHHHHHHHc
Q 025758           23 QNLKKLVTEQDCP-H--LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        23 ~~l~~~~~~~~~~-~--ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ..|...+..|.++ +  ++|+||||+||||++..++..+.
T Consensus        47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~   86 (356)
T 3hr8_A           47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ   86 (356)
T ss_dssp             HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3555555423433 2  89999999999999999998654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.07  E-value=1.5e-05  Score=75.63  Aligned_cols=52  Identities=8%  Similarity=0.216  Sum_probs=33.0

Q ss_pred             CCeeEEEEeCC-CCCCHHH-HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEV-DKLSREA-QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~-~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      .++.++||||+ .++++.. ...+..+++....  +..+|++||+. .+...+.++.
T Consensus       867 ~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~  922 (1022)
T 2o8b_B          867 TAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNV  922 (1022)
T ss_dssp             CTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCS
T ss_pred             CCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcc
Confidence            36789999999 6788765 3446677776643  45566666654 4444444443

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=98.03  E-value=1.3e-05  Score=71.58  Aligned_cols=57  Identities=16%  Similarity=0.282  Sum_probs=36.2

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC-------cccHHHhhhhheeeecCC
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS-------KVTEAIRSRCLNIRINSP  189 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~-------~~~~~l~sR~~~i~~~~~  189 (248)
                      ..+++||||+.+++......|++.+   +....+|++.....       .+...+.+.+..+.+...
T Consensus       279 ~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~QL~~v~~g~~~~~l~~~~~~~~L~~~  342 (574)
T 3e1s_A          279 PYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLTQV  342 (574)
T ss_dssp             SCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTSCCCSSSCCHHHHHHHHSCEEECCCC
T ss_pred             cCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccccCCccCCcHHHHHHhcCCEEEccee
Confidence            5689999999999987666555544   34567777765442       344455555555555443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.03  E-value=3.3e-05  Score=66.45  Aligned_cols=29  Identities=31%  Similarity=0.267  Sum_probs=23.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKV   66 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~   66 (248)
                      +++.||+|+||||++..+|..+. +....+
T Consensus       100 I~lvG~~GsGKTTt~~kLA~~l~-~~G~kV  128 (433)
T 3kl4_A          100 IMLVGVQGSGKTTTAGKLAYFYK-KRGYKV  128 (433)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHH-HTTCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH-HcCCeE
Confidence            89999999999999999998663 344444

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.03  E-value=1e-05  Score=66.28  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=26.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~   71 (248)
                      +.++|++|+||||++..+|+.+ .+..+.+.+.+.
T Consensus       101 i~i~g~~G~GKTT~~~~la~~~-~~~~~~v~l~~~  134 (295)
T 1ls1_A          101 WFLVGLQGSGKTTTAAKLALYY-KGKGRRPLLVAA  134 (295)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHH-HHTTCCEEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEecC
Confidence            7888999999999999999855 445566655443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.01  E-value=2.2e-05  Score=65.89  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=21.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      ++++||||+||||++..++..+...
T Consensus        64 v~I~G~pGsGKTtLal~la~~~~~~   88 (349)
T 2zr9_A           64 IEIYGPESSGKTTVALHAVANAQAA   88 (349)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhC
Confidence            8999999999999999999766433

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.00  E-value=4.3e-06  Score=72.79  Aligned_cols=93  Identities=23%  Similarity=0.300  Sum_probs=53.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (248)
                      ++|.||||+||||+++.|++.+ .+.+|.+.+.+.+.......    ..+........+.+.....+.....++.+.+..
T Consensus       296 I~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~~r~aa~----eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~  370 (503)
T 2yhs_A          296 ILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDTFRAAAV----EQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA  370 (503)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCTTCHHHH----HHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             EEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCcccchhhH----HHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence            8999999999999999999854 56677777754322100000    000000001124444444444555666666665


Q ss_pred             HHhcCCCcCCCCCCeeEEEEeCCCCCC
Q 025758          117 MAKNRPIDTKGKRGFKVLVLNEVDKLS  143 (248)
Q Consensus       117 ~~~~~~~~~~~~~~~~viiiDE~d~l~  143 (248)
                      ...         .+.+++|||-+..+.
T Consensus       371 a~~---------~~~DvVLIDTaGrl~  388 (503)
T 2yhs_A          371 AKA---------RNIDVLIADTAGRLQ  388 (503)
T ss_dssp             HHH---------TTCSEEEECCCCSCC
T ss_pred             HHh---------cCCCEEEEeCCCccc
Confidence            443         134688999887664

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.00  E-value=1.5e-05  Score=74.59  Aligned_cols=43  Identities=16%  Similarity=0.182  Sum_probs=35.8

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCc
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSK  172 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~  172 (248)
                      ++.++|+||| .+||+.....++++|.+... +..+|+++|+.+.
T Consensus       826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~  870 (916)
T 3pih_A          826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDV  870 (916)
T ss_dssp             SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            4689999999 89999999999999988743 4578888888653

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.99  E-value=3.5e-05  Score=77.01  Aligned_cols=24  Identities=33%  Similarity=0.578  Sum_probs=21.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|+||||||||++|..++....
T Consensus      1429 ~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A         1429 IVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            499999999999999999987653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.98  E-value=1.2e-05  Score=74.63  Aligned_cols=53  Identities=26%  Similarity=0.265  Sum_probs=40.9

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ++.++|+||| .+||......+++++.+... +..+|+++|+.+.+  ...+|+..+
T Consensus       751 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i--~~aDrii~L  805 (842)
T 2vf7_A          751 GGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV--AASDWVLDI  805 (842)
T ss_dssp             SCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence            4799999999 79999999999999988743 45788888876554  345665444

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.98  E-value=6.6e-06  Score=63.36  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=26.3

Q ss_pred             CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758           33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (248)
Q Consensus        33 ~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~   71 (248)
                      ....++|.||+||||||+++.+++.+     |.+.+++.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d   61 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEAD   61 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEccc
Confidence            33458999999999999999999866     44445443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.96  E-value=1.1e-05  Score=62.44  Aligned_cols=35  Identities=34%  Similarity=0.409  Sum_probs=26.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC--CCcccceeccc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG--PGAEKVKVENK   71 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~--~~~~~~~~~~~   71 (248)
                      +.|.||+|+||||+++++++.+..  +..+.+..++.
T Consensus        25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            889999999999999999996542  23455555553

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=97.95  E-value=0.00032  Score=66.27  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=34.7

Q ss_pred             cccHHHHHHHHHHhhc-CCCCeeEEECCCCCCHHHHHHHHHH
Q 025758           16 IVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~-~~~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      +|.+..++.|..++.. .....+.++|+.|+||||+|+.++.
T Consensus       131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence            8899999999988865 3334489999999999999999985

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.95  E-value=2.8e-05  Score=68.24  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=45.2

Q ss_pred             Cee-EEEEeCC-CCCCH---HHHHHHHHHHHHhcC-CeeEEEEecCCC--cccHHHhhhh-heeeecCCCHHHHHHHHHH
Q 025758          130 GFK-VLVLNEV-DKLSR---EAQHSLRRTMEKYSA-SCRLILCCNSSS--KVTEAIRSRC-LNIRINSPTEEQIVKVLEF  200 (248)
Q Consensus       130 ~~~-viiiDE~-d~l~~---~~~~~ll~~le~~~~-~~~~Il~t~~~~--~~~~~l~sR~-~~i~~~~~~~~~~~~il~~  200 (248)
                      .|. +++|||+ +.+..   .....+.++.....+ +..+|++|+++.  .+...+++.+ ..|.|...+..+.+.++..
T Consensus       296 lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~  375 (512)
T 2ius_A          296 EPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ  375 (512)
T ss_dssp             CCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred             CCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence            344 8999999 44432   122333333343333 567888888887  3666677777 4678888888888877653

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.95  E-value=3.1e-05  Score=60.52  Aligned_cols=25  Identities=16%  Similarity=0.335  Sum_probs=22.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      +++.|++|+||||++..+|..+...
T Consensus         9 I~~~~kgGvGKTt~a~~la~~l~~~   33 (228)
T 2r8r_A            9 VFLGAAPGVGKTYAMLQAAHAQLRQ   33 (228)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHC
Confidence            9999999999999999999877443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.95  E-value=0.0001  Score=63.48  Aligned_cols=24  Identities=42%  Similarity=0.506  Sum_probs=22.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      +++.|++|+||||++..+|..+..
T Consensus       103 IlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A          103 LLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EEEECcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999987754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.94  E-value=9.6e-06  Score=67.70  Aligned_cols=41  Identities=27%  Similarity=0.424  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +.+++.+...+++|..++++|.|++|+||||+++++|+.+.
T Consensus         9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A            9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            44666777777788877899999999999999999999774

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.93  E-value=4.7e-05  Score=65.32  Aligned_cols=22  Identities=41%  Similarity=0.561  Sum_probs=20.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++|.||+|+|||||++++++..
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            7999999999999999999843

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.93  E-value=0.00014  Score=58.04  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=21.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +++.||+||||||+|+.+|+.+.
T Consensus         4 i~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            4 HLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhcCC
Confidence            78999999999999999999763

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.92  E-value=8.4e-06  Score=71.80  Aligned_cols=60  Identities=23%  Similarity=0.287  Sum_probs=45.9

Q ss_pred             CCCccccc--c--cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758            9 PKTLDQVI--V--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (248)
Q Consensus         9 p~~~~~li--g--~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~   71 (248)
                      |.++.+++  |  ...+.+.+...+..|.  .+++.||+||||||+++++++ +..+..+.+.+.+.
T Consensus       233 ~~~~~~l~~~G~~~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~-~i~~~~giitied~  296 (511)
T 2oap_1          233 PLTPIDLIEKGTVPSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMM-FIPPDAKVVSIEDT  296 (511)
T ss_dssp             CCCHHHHHHTTSSCHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGG-GSCTTCCEEEEESS
T ss_pred             CCChhhHHhcCCCCHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHh-hCCCCCCEEEEcCc
Confidence            33455664  3  5667788888887664  388999999999999999998 55777787777664

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.92  E-value=3.5e-05  Score=58.90  Aligned_cols=50  Identities=8%  Similarity=0.108  Sum_probs=34.3

Q ss_pred             CCeeEEEEeCCCCC---CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHh
Q 025758          129 RGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR  178 (248)
Q Consensus       129 ~~~~viiiDE~d~l---~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~  178 (248)
                      ..++++||||+.+.   +--....+++++...+...-+|+|++....-+-.+.
T Consensus       119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A  171 (196)
T 1g5t_A          119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA  171 (196)
T ss_dssp             TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred             CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence            47899999999321   212234588888877777889999998765443333

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.90  E-value=2.2e-05  Score=67.34  Aligned_cols=63  Identities=21%  Similarity=0.328  Sum_probs=41.3

Q ss_pred             CCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      +.+++++--.......|...+. .+...++++||+|+||||+++++++.+ .+..+.+...+.++
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ed~i  205 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTVEDPI  205 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEEESSC
T ss_pred             CCCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEecccc
Confidence            4456665334444445555543 222238999999999999999999955 55667776665443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.88  E-value=4.4e-06  Score=63.65  Aligned_cols=34  Identities=44%  Similarity=0.657  Sum_probs=26.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~   72 (248)
                      .++|.|||||||||+++.+++.   ...+.+.+++..
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~   44 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDD   44 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccc
Confidence            3889999999999999999983   455666666543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.87  E-value=8.8e-06  Score=64.37  Aligned_cols=29  Identities=28%  Similarity=0.463  Sum_probs=22.5

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCccc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEK   65 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~   65 (248)
                      +++.||||+||||++..++..+.....+.
T Consensus        26 ~~i~G~~GsGKTtl~~~~~~~~~~~~~~v   54 (247)
T 2dr3_A           26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPG   54 (247)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            88999999999999988877654443333

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.86  E-value=9.7e-05  Score=60.61  Aligned_cols=89  Identities=13%  Similarity=0.193  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhhheeeecCC-CHHHHHHHHHHHHHHcCCCCCHHHHHHHH--------
Q 025758          148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP-TEEQIVKVLEFIAKKEGLQLPSGFATRLA--------  218 (248)
Q Consensus       148 ~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~-~~~~~~~il~~~~~~~~~~~~~~~~~~l~--------  218 (248)
                      ....+.+++....+.+.+++--...-..++..-   +.+++. .+.+++..+...+..+|.   +...+.|.        
T Consensus        79 ~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g---~~~~~~~~~~~~R~~l~~~~~~~g~---~~L~~~L~~~DP~~A~  152 (322)
T 3exa_A           79 DLATPLITEIHERGRLPFLVGGTGLYVNAVIHQ---FNLGDIRADEDYRHELEAFVNSYGV---QALHDKLSKIDPKAAA  152 (322)
T ss_dssp             HHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHT---CCCCCCBCCHHHHHHHHHHHHHSCH---HHHHHHHHTTCHHHHT
T ss_pred             HHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcC---CcCCCCCCCHHHHHHHHHHHHhcCH---HHHHHHHHhhCHHHHh
Confidence            344566666544444444444433344444333   345454 345677777777766653   23333332        


Q ss_pred             HHccccHHHHHHHHHHHhhhcccc
Q 025758          219 EKSNRSLRRAILSFETCRVQQLRF  242 (248)
Q Consensus       219 ~~~~g~~r~~~~~l~~~~~~~~~~  242 (248)
                      +....|.+.++..|+-....+.+.
T Consensus       153 ~i~pnd~~Ri~RALEV~~~TG~~~  176 (322)
T 3exa_A          153 AIHPNNYRRVIRALEIIKLTGKTV  176 (322)
T ss_dssp             TSCTTCHHHHHHHHHHHHHTC---
T ss_pred             hcCcccHHHHHHHHHHHHHHCCCH
Confidence            123568899999998877666544

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.84  E-value=9.2e-05  Score=60.88  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=26.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      +++.||+|+||||++..+|..+ .+..+.+.+.+
T Consensus       107 i~ivG~~GsGKTTl~~~LA~~l-~~~g~kV~lv~  139 (306)
T 1vma_A          107 IMVVGVNGTGKTTSCGKLAKMF-VDEGKSVVLAA  139 (306)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred             EEEEcCCCChHHHHHHHHHHHH-HhcCCEEEEEc
Confidence            8999999999999999999865 44555555433

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.84  E-value=7.3e-05  Score=69.89  Aligned_cols=53  Identities=9%  Similarity=0.176  Sum_probs=40.2

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +++++|+||| .+||+.....++++|.+... +..+|+++|+.+.+  ...+|+..+
T Consensus       866 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i--~~aDrIivL  920 (972)
T 2r6f_A          866 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI--KTADYIIDL  920 (972)
T ss_dssp             SCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence            4699999999 89999999999999988743 45788888876543  245555444

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.83  E-value=5.1e-06  Score=66.50  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++|.|+|||||||+++.+++.+
T Consensus        35 i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           35 ILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             EEEESCGGGTTHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8999999999999999999865

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.83  E-value=0.00036  Score=54.95  Aligned_cols=21  Identities=24%  Similarity=0.467  Sum_probs=17.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.||+||||||++..+.-
T Consensus        78 ~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           78 VVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHhHHHHHh
Confidence            489999999999987766653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.81  E-value=1.6e-05  Score=62.19  Aligned_cols=45  Identities=29%  Similarity=0.370  Sum_probs=26.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~   72 (248)
                      .++.+...+..|..  +.|.||+|+||||+++++++ +. +  |.+.+ +..
T Consensus        12 ~l~~isl~i~~G~~--~~lvGpsGsGKSTLl~~L~g-~~-p--G~i~~-g~~   56 (218)
T 1z6g_A           12 SGLVPRGSMNNIYP--LVICGPSGVGKGTLIKKLLN-EF-P--NYFYF-SVS   56 (218)
T ss_dssp             ----------CCCC--EEEECSTTSSHHHHHHHHHH-HS-T--TTEEE-CCC
T ss_pred             cccCCceecCCCCE--EEEECCCCCCHHHHHHHHHh-hC-C--CcEEE-eec
Confidence            34455556655543  66999999999999999999 44 4  66666 443

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=97.79  E-value=0.00044  Score=61.22  Aligned_cols=69  Identities=20%  Similarity=0.312  Sum_probs=49.1

Q ss_pred             eeEEEEeCCCCC----CHHHHHHHHHHHHHhcC-CeeEEEEecCCC--cccHHHhhhh-heeeecCCCHHHHHHHHH
Q 025758          131 FKVLVLNEVDKL----SREAQHSLRRTMEKYSA-SCRLILCCNSSS--KVTEAIRSRC-LNIRINSPTEEQIVKVLE  199 (248)
Q Consensus       131 ~~viiiDE~d~l----~~~~~~~ll~~le~~~~-~~~~Il~t~~~~--~~~~~l~sR~-~~i~~~~~~~~~~~~il~  199 (248)
                      +-+++|||++.+    .......+.++.....+ +..+|++|..+.  .+...+++-+ ..|.|...+..+...++.
T Consensus       344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd  420 (574)
T 2iut_A          344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD  420 (574)
T ss_dssp             EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred             cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence            468999999655    33445556666665544 456888888887  6777888887 467788888888777774

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.79  E-value=1e-05  Score=66.56  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=30.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      +.|.||||+||||+++.+|+.+ .+.+|.+.+.+.+.
T Consensus       103 i~lvG~nGsGKTTll~~Lag~l-~~~~g~V~l~g~d~  138 (302)
T 3b9q_A          103 IMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDT  138 (302)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeecc
Confidence            8899999999999999999954 56778887777543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.79  E-value=1.3e-05  Score=60.02  Aligned_cols=23  Identities=35%  Similarity=0.638  Sum_probs=21.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|+||+||||||+++.+++.+
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999865

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.78  E-value=9.4e-05  Score=60.55  Aligned_cols=24  Identities=25%  Similarity=0.528  Sum_probs=21.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|.||+|+||||++..+|..+.
T Consensus       107 vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          107 YIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            389999999999999999998653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.77  E-value=1.3e-05  Score=66.15  Aligned_cols=23  Identities=35%  Similarity=0.661  Sum_probs=21.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++++||+||||||+++.+|+.+
T Consensus         7 ~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999999966

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=97.76  E-value=0.00014  Score=65.53  Aligned_cols=38  Identities=18%  Similarity=0.291  Sum_probs=26.9

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCC
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS  170 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~  170 (248)
                      ..+++||||+++++......++   +..+.+..+|++....
T Consensus       262 ~~d~lIIDEAsml~~~~~~~Ll---~~l~~~~~liLvGD~~  299 (608)
T 1w36_D          262 HLDVLVVDEASMIDLPMMSRLI---DALPDHARVIFLGDRD  299 (608)
T ss_dssp             SCSEEEECSGGGCBHHHHHHHH---HTCCTTCEEEEEECTT
T ss_pred             CCCEEEEechhhCCHHHHHHHH---HhCCCCCEEEEEcchh
Confidence            5679999999999865544444   4445567888886544

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.75  E-value=0.00011  Score=56.18  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+++||.|+||||.+.-++....
T Consensus        11 ~v~~G~mgsGKTT~ll~~a~r~~   33 (191)
T 1xx6_A           11 EVIVGPMYSGKSEELIRRIRRAK   33 (191)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            78999999999999988887663

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.75  E-value=1.9e-05  Score=68.71  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=33.8

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~   74 (248)
                      ..+.|.||||+||||+++++++ +..+..|.+.++|..+.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT-ALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH-HHCCCTTTCCCCCTTSC
T ss_pred             ceEEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEEcc
Confidence            3478999999999999999998 67888999999887654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.74  E-value=1.6e-05  Score=59.73  Aligned_cols=23  Identities=17%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|+|++||||||+++.++..+
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            48999999999999999999976

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.73  E-value=1.2e-05  Score=64.04  Aligned_cols=39  Identities=18%  Similarity=0.062  Sum_probs=22.5

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ...+++.+...+..+.  .+.|.||+||||||+++.+++.+
T Consensus        11 ~~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             ------------CCSE--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHh
Confidence            4445666666665442  37799999999999999999965

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.73  E-value=0.00031  Score=56.23  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.7

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..++|.|+|||||||+++.++..+
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHH
Confidence            348999999999999999999875

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.73  E-value=0.00014  Score=61.08  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=21.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      ++++||||+||||+|..++..+...
T Consensus        66 i~I~G~pGsGKTtLal~la~~~~~~   90 (356)
T 1u94_A           66 VEIYGPESSGKTTLTLQVIAAAQRE   90 (356)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            8999999999999999999866433

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.73  E-value=2.2e-05  Score=58.48  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.+++.+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999876

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.72  E-value=0.0002  Score=58.76  Aligned_cols=21  Identities=43%  Similarity=0.634  Sum_probs=19.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.||+|+||||+++.+++.
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999998874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.72  E-value=2.8e-05  Score=59.70  Aligned_cols=36  Identities=28%  Similarity=0.291  Sum_probs=22.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..+.+...+..+  ..++|.||+||||||+++.+++.+
T Consensus        14 ~~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           14 GTENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ----------CC--CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            344555555433  358999999999999999999976

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.72  E-value=2.7e-05  Score=58.91  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=22.1

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.++|+|++||||||+++.+|..+
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            458999999999999999999977

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.72  E-value=4.5e-05  Score=62.85  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=27.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcC--CCccccee
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFG--PGAEKVKV   68 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~--~~~~~~~~   68 (248)
                      .+.|.||+|+||||+++++++.+ .  +.+|.+.+
T Consensus        82 iigI~G~~GsGKSTl~~~L~~~l-~~~~~~G~i~v  115 (308)
T 1sq5_A           82 IISIAGSVAVGKSTTARVLQALL-SRWPEHRRVEL  115 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH-TTSTTCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-hhCCCCCeEEE
Confidence            38899999999999999999844 5  67777776

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.72  E-value=2.1e-05  Score=59.49  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.|.||+|+||||+++.+++.+
T Consensus         8 i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            8 LVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            8899999999999999999843

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.70  E-value=1.7e-05  Score=64.72  Aligned_cols=22  Identities=41%  Similarity=0.723  Sum_probs=20.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++|.|||||||||+++.++..+
T Consensus        36 ivl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           36 FLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             EEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999865

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.68  E-value=2.2e-05  Score=60.38  Aligned_cols=22  Identities=32%  Similarity=0.693  Sum_probs=20.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+.|.|||||||||+++++++.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            3789999999999999999984

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.68  E-value=1.9e-05  Score=66.40  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=30.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      +.|.||||+||||+++.+|+.+ .+..|.+.+.+.+.
T Consensus       160 i~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~D~  195 (359)
T 2og2_A          160 IMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDT  195 (359)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCC
T ss_pred             EEEEcCCCChHHHHHHHHHhhc-cccCCEEEEecccc
Confidence            8999999999999999999954 56678887777543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.66  E-value=4e-05  Score=58.92  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=21.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+.|.||+|+||||+++.+++.+.
T Consensus        27 ~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           27 VIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.65  E-value=9.4e-05  Score=60.57  Aligned_cols=22  Identities=32%  Similarity=0.670  Sum_probs=20.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +++.||+||||||++..+|..+
T Consensus        13 i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           13 IFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCccCHHHHHHHHHHhC
Confidence            8899999999999999999865

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.65  E-value=4e-05  Score=62.88  Aligned_cols=37  Identities=27%  Similarity=0.469  Sum_probs=28.2

Q ss_pred             HHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        20 ~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+++.+...+++|.  .+.|+||+|+||||+++++++.+
T Consensus       114 ~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          114 NALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc
Confidence            34555555555553  36799999999999999999954

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.64  E-value=0.00025  Score=58.67  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=26.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      ++++||+|+||||++..+|..+ .+..+++-+.+
T Consensus       108 I~ivG~~G~GKTT~~~~LA~~l-~~~g~kVllid  140 (320)
T 1zu4_A          108 FMLVGVNGTGKTTSLAKMANYY-AELGYKVLIAA  140 (320)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEe
Confidence            8899999999999999999865 44556655544

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.64  E-value=3.1e-05  Score=58.03  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=21.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.||+|+||||+++.+++.+
T Consensus        10 ~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A           10 IYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhh
Confidence            38999999999999999999865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.64  E-value=3.3e-05  Score=57.99  Aligned_cols=23  Identities=43%  Similarity=0.664  Sum_probs=21.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.+|+.+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            48899999999999999999976

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.63  E-value=2.8e-05  Score=60.12  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=20.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.|.||||+||||+++++++.+
T Consensus        23 ~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           23 VVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6799999999999999999943

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.62  E-value=3.3e-05  Score=59.35  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=21.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.+++.+
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999976

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.62  E-value=0.00063  Score=57.30  Aligned_cols=23  Identities=39%  Similarity=0.641  Sum_probs=20.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ++++||||+|||+++..++..+.
T Consensus        77 i~I~G~pGsGKTtlal~la~~~~   99 (366)
T 1xp8_A           77 TEIYGPESGGKTTLALAIVAQAQ   99 (366)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHH
Confidence            88999999999999999987654

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=97.62  E-value=0.0025  Score=49.22  Aligned_cols=53  Identities=13%  Similarity=0.262  Sum_probs=33.9

Q ss_pred             CCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ...+++++||+|.+.  ......+.+++...+.+..+++.|..+..-...+.++.
T Consensus       157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~  211 (220)
T 1t6n_A          157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF  211 (220)
T ss_dssp             TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred             ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHH
Confidence            466899999998662  34444555566655556777777777665455554443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.61  E-value=3.7e-05  Score=59.07  Aligned_cols=23  Identities=35%  Similarity=0.717  Sum_probs=20.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|.||+|+||||+++++++.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            37899999999999999999854

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.60  E-value=4.5e-05  Score=57.43  Aligned_cols=24  Identities=42%  Similarity=0.683  Sum_probs=21.9

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.++|+|++||||||+++.++..+
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHh
Confidence            458999999999999999999876

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.60  E-value=0.00018  Score=60.18  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=20.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++++||||+|||+++..++...
T Consensus       125 ~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          125 TEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             EEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999754

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.59  E-value=0.00022  Score=56.32  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=25.7

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..+.+..++..   ..++++||+|+|||.++..++..+
T Consensus        98 Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A           98 QEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             HHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence            34445555543   248999999999999999888754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.59  E-value=3.7e-05  Score=57.66  Aligned_cols=20  Identities=40%  Similarity=0.620  Sum_probs=19.3

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++|.|+|||||||+++.++.
T Consensus         5 I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            5 ILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHh
Confidence            89999999999999999997

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.59  E-value=7.1e-05  Score=62.08  Aligned_cols=24  Identities=38%  Similarity=0.382  Sum_probs=21.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      ++++||||+|||+++..++.....
T Consensus       110 ~~i~G~~GsGKT~la~~la~~~~~  133 (324)
T 2z43_A          110 TEFFGEFGSGKTQLCHQLSVNVQL  133 (324)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             EEEECCCCCCHhHHHHHHHHHHhc
Confidence            899999999999999999976433

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.57  E-value=5.9e-05  Score=56.11  Aligned_cols=26  Identities=35%  Similarity=0.392  Sum_probs=22.6

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ..+++|.|++||||||+++.++..+.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC
Confidence            34589999999999999999999774

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.57  E-value=4.4e-05  Score=60.66  Aligned_cols=25  Identities=32%  Similarity=0.527  Sum_probs=21.9

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ..+.|.|||||||||+++.++..+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3599999999999999999997653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.56  E-value=4.7e-05  Score=57.69  Aligned_cols=24  Identities=21%  Similarity=0.301  Sum_probs=22.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|.|++||||||+++.++..+.
T Consensus         5 ~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999999774

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.56  E-value=4.9e-05  Score=57.46  Aligned_cols=23  Identities=39%  Similarity=0.795  Sum_probs=21.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.+++.+
T Consensus         6 ~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            6 AVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999866

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.55  E-value=4.1e-05  Score=59.19  Aligned_cols=23  Identities=39%  Similarity=0.426  Sum_probs=20.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|.||+||||||+++.+++.+
T Consensus         8 ~i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            8 VIGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999955

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.55  E-value=5.7e-05  Score=57.07  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=21.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|+|++||||||+++.++..+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            488999999999999999999763

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.54  E-value=6.2e-05  Score=58.66  Aligned_cols=24  Identities=33%  Similarity=0.610  Sum_probs=22.1

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..++|.|++||||||+++.++..+
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            458999999999999999999976

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.54  E-value=4.8e-05  Score=63.70  Aligned_cols=50  Identities=12%  Similarity=0.082  Sum_probs=36.8

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~   71 (248)
                      ...+++.+ .-+..|.  .+.|.||||+||||+++.+++ +..++.+.+.+.|.
T Consensus        58 g~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g-~~~~~~g~i~~~G~  107 (347)
T 2obl_A           58 GVRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICN-GASADIIVLALIGE  107 (347)
T ss_dssp             SCHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHH-HSCCSEEEEEEESC
T ss_pred             CCEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCEEEEEEecc
Confidence            34566666 5555543  467999999999999999999 55667777666654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.54  E-value=0.0005  Score=68.91  Aligned_cols=25  Identities=32%  Similarity=0.542  Sum_probs=21.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      .++++||+||||||+|..++.+...
T Consensus      1083 ~vll~G~~GtGKT~la~~~~~ea~k 1107 (2050)
T 3cmu_A         1083 IVEIYGPESSGKTTLTLQVIAAAQR 1107 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3999999999999999999976533

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.53  E-value=6.2e-05  Score=57.03  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=21.7

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHH
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ...++|+|++||||||+++.++..
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            345999999999999999999986

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.53  E-value=4.8e-05  Score=58.88  Aligned_cols=23  Identities=30%  Similarity=0.575  Sum_probs=20.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.||+|+||||+++.+++.+
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            48899999999999999999843

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.52  E-value=0.00029  Score=60.43  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=20.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++++|+|||||||+++.++..+
T Consensus       261 Iil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          261 VVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             EEEESCTTSSHHHHHHHHTGGG
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8999999999999999998754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.52  E-value=4.7e-05  Score=57.72  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|.|++||||||+++.++..+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999999774

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.52  E-value=4.7e-05  Score=57.84  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=21.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.++..+
T Consensus         7 ~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            7 LIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            38999999999999999999876

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.52  E-value=0.00012  Score=56.23  Aligned_cols=22  Identities=36%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.+.|++|+||||+++.+++.+
T Consensus        25 i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           25 LGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999865

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.51  E-value=6.5e-05  Score=58.26  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=21.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|+||+||||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999876

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.51  E-value=5.1e-05  Score=58.31  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|.||+||||||+++.+++.+
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            48899999999999999999843

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.51  E-value=2e-05  Score=61.92  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=25.5

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      +.|.||+|+||||+++++++ +..+..|.+.+++..+
T Consensus        30 ~~i~GpnGsGKSTll~~i~g-~~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVT-ALIPDLTLLHFRNTTE   65 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHH-HHSCCTTTC-------
T ss_pred             EEEECCCCCCHHHHHHHHhc-ccccCCCeEEECCEEc
Confidence            45899999999999999998 5677788888877655

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.51  E-value=6.6e-05  Score=56.88  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=21.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|.|++|+||||+++.++..+.
T Consensus        15 ~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           15 VVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999999774

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.50  E-value=9.5e-05  Score=56.71  Aligned_cols=24  Identities=38%  Similarity=0.683  Sum_probs=21.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|.|++||||||+++.++..+.
T Consensus        22 ~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           22 RVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999998763

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.49  E-value=3.4e-05  Score=64.41  Aligned_cols=38  Identities=32%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccce
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~   73 (248)
                      ..+.|.||||+||||+++++++. ..+.++.+.+.+.+.
T Consensus        56 ~~v~i~G~~GaGKSTLl~~l~g~-~~~~~g~v~i~~~d~   93 (337)
T 2qm8_A           56 IRVGITGVPGVGKSTTIDALGSL-LTAAGHKVAVLAVDP   93 (337)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH-HHHTTCCEEEEEECG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh-hhhCCCEEEEEEEcC
Confidence            34889999999999999999984 466677777766544

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.49  E-value=6.5e-05  Score=58.32  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|+||+||||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999865

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.48  E-value=6.9e-05  Score=58.53  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=21.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|.||+||||||+++.+++.+
T Consensus         7 ~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999866

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=97.48  E-value=0.00088  Score=51.21  Aligned_cols=53  Identities=15%  Similarity=0.208  Sum_probs=32.7

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ...+++++||+|.+... ....+.+++...+.+..+++.|.....-...+.++.
T Consensus       143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~  196 (207)
T 2gxq_A          143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERY  196 (207)
T ss_dssp             TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHH
T ss_pred             hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHH
Confidence            45679999999865322 233455555555556677777777665444554443

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.47  E-value=6.1e-05  Score=58.04  Aligned_cols=23  Identities=43%  Similarity=0.715  Sum_probs=20.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.||+||||||+++.++..+
T Consensus        14 ~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            38899999999999999999865

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.47  E-value=0.0012  Score=54.29  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ++++||||+||||++.-++....
T Consensus        31 teI~G~pGsGKTtL~Lq~~~~~~   53 (333)
T 3io5_A           31 LILAGPSKSFKSNFGLTMVSSYM   53 (333)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999888876554

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.47  E-value=0.0021  Score=59.45  Aligned_cols=40  Identities=15%  Similarity=0.333  Sum_probs=25.3

Q ss_pred             CCCeeEEEEeCCCC--CCHHHHHHHHHHHHHhcCCeeEEEEe
Q 025758          128 KRGFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCC  167 (248)
Q Consensus       128 ~~~~~viiiDE~d~--l~~~~~~~ll~~le~~~~~~~~Il~t  167 (248)
                      ..++.++||||++.  ++......+++.+.....+..+|++|
T Consensus       206 l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~S  247 (773)
T 2xau_A          206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMS  247 (773)
T ss_dssp             CTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEe
Confidence            45789999999974  55444455555555444455555554

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.47  E-value=0.00017  Score=58.77  Aligned_cols=23  Identities=30%  Similarity=0.686  Sum_probs=21.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +.+.||+||||||+++.+++.+.
T Consensus        34 i~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           34 IFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            89999999999999999999663

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.47  E-value=7.5e-05  Score=55.65  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=21.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.++..+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999976

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.46  E-value=0.00015  Score=57.46  Aligned_cols=24  Identities=38%  Similarity=0.628  Sum_probs=21.8

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..++|+||+||||||+++.++..+
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            349999999999999999999866

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.46  E-value=5.3e-05  Score=57.04  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=18.1

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ..++|.|++||||||+++.++..+.
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3489999999999999999998663

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.46  E-value=8.4e-05  Score=56.55  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=22.0

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..++|.|++||||||+++.++..+
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            458999999999999999999876

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.45  E-value=8.1e-05  Score=56.50  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.++..+
T Consensus         5 ~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            5 VVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999876

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.45  E-value=8.1e-05  Score=57.34  Aligned_cols=25  Identities=28%  Similarity=0.228  Sum_probs=22.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      .++|.|++||||||+++.++..+..
T Consensus         6 ~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            6 LIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4899999999999999999997743

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.44  E-value=8.3e-05  Score=56.92  Aligned_cols=23  Identities=22%  Similarity=0.585  Sum_probs=21.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.+++.+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            37899999999999999999977

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.44  E-value=0.0001  Score=54.73  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=21.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999976

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.43  E-value=8.9e-05  Score=57.84  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=22.5

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ..++|.||+||||||+++.++..+.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4589999999999999999999773

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.42  E-value=9.1e-05  Score=57.34  Aligned_cols=22  Identities=45%  Similarity=0.827  Sum_probs=20.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++|.|||||||+|.|+.+++.+
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999976

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.42  E-value=7.3e-05  Score=55.59  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=19.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.||+||||||+++.+ ..+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHT
T ss_pred             EEEEECCCCCCHHHHHHHH-HHC
Confidence            4789999999999999999 544

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.42  E-value=0.00011  Score=56.33  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=21.1

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..++|.||+|+||||+++.+++..
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhC
Confidence            348999999999999999999853

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.42  E-value=0.0001  Score=55.43  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=21.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|+|++||||||+++.+++.+
T Consensus         7 ~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            7 TVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            38899999999999999999966

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.42  E-value=5.7e-05  Score=62.52  Aligned_cols=40  Identities=25%  Similarity=0.270  Sum_probs=32.7

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHHHc--------CCCcccceeccccee
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQVF--------GPGAEKVKVENKTWK   74 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~l~--------~~~~~~~~~~~~~~~   74 (248)
                      .+.++++|++|+||||+++.+++ ..        .++.|.+.+++..+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~-~~~~~~~aVi~~d~G~i~idg~~l~   51 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILN-EQHGYKIAVIENEFGEVSVDDQLIG   51 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHH-SCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHh-hcCCCcEEEEEecCcccCccHHHHh
Confidence            45589999999999999999998 33        457888888887654

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.41  E-value=0.0015  Score=56.73  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=21.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +++.|+||+||||++..++..+.
T Consensus       206 iiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          206 IIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999998664

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.41  E-value=0.00019  Score=59.38  Aligned_cols=22  Identities=23%  Similarity=0.170  Sum_probs=20.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.|.||+||||||+++.+++.+
T Consensus        95 igI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           95 IGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999855

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.40  E-value=0.00013  Score=57.51  Aligned_cols=24  Identities=33%  Similarity=0.600  Sum_probs=22.1

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..++|.|++||||||+++.++..+
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            359999999999999999999976

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.40  E-value=8.3e-05  Score=57.89  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=22.0

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..++|.|++||||||+++.++..+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            458999999999999999999977

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.39  E-value=0.00013  Score=58.13  Aligned_cols=40  Identities=25%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             ccHHHHHHHHHHhhc---CCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           17 VHQDIAQNLKKLVTE---QDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        17 g~~~~~~~l~~~~~~---~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +...+++.+...+..   +.  .+.|.|++|+||||+++.+++.+
T Consensus        30 ~~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           30 EEQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             --CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence            445577777777665   43  58899999999999999999976

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.38  E-value=2.4e-05  Score=58.72  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=26.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCC---cccceecccc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPG---AEKVKVENKT   72 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~---~~~~~~~~~~   72 (248)
                      .+.|.|++|+||||+++.+++.+ .+.   .|.+.+++..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~-~~~g~~~G~I~~dg~~   42 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL-RERGLRVAVVKRHAHG   42 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH-HHTTCCEEEEEC----
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-hhcCCceEEEEEcCcc
Confidence            47899999999999999999955 444   6777777654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.38  E-value=6.6e-05  Score=61.64  Aligned_cols=37  Identities=19%  Similarity=0.169  Sum_probs=23.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCccccee---cccce
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV---ENKTW   73 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~---~~~~~   73 (248)
                      .+.|.||||+||||+++++++ +..+..|.+..   .|++.
T Consensus       171 iv~l~G~sG~GKSTll~~l~g-~~~~~~G~i~~~~~~g~~~  210 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINP-GLKLRVSEVSEKLQRGRHT  210 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHST-TCCCC-------------C
T ss_pred             eEEEECCCCCcHHHHHHHhcc-cccccccceecccCCCCCc
Confidence            377999999999999999998 67788888776   56543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.38  E-value=6e-05  Score=64.57  Aligned_cols=36  Identities=33%  Similarity=0.478  Sum_probs=31.0

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHH
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ++.+...+..|..+.+.|.||||+|||||++++++.
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            778888888888766889999999999999999984

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.37  E-value=0.00011  Score=60.68  Aligned_cols=22  Identities=23%  Similarity=0.179  Sum_probs=20.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.|.||+||||||+++++++.+
T Consensus        93 vgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           93 IGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCchHHHHHHHHHhhc
Confidence            8899999999999999999955

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.37  E-value=9.5e-05  Score=56.38  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=21.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.+++.+
T Consensus        14 ~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           14 IIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999976

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.37  E-value=8.1e-05  Score=57.29  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=19.1

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +.|.||+||||||+++.+++
T Consensus         5 i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            5 VGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999997

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.36  E-value=0.00013  Score=56.81  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=20.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++|.|||||||+|.|+.++..+
T Consensus        32 I~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7889999999999999999976

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.34  E-value=0.0031  Score=48.52  Aligned_cols=27  Identities=30%  Similarity=0.522  Sum_probs=23.0

Q ss_pred             CCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           32 QDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        32 ~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.+.+++.|++|+||||++..+++..
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345669999999999999999999743

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.34  E-value=9.4e-05  Score=56.82  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=20.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.++|++||||||+++.+++ +
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C
Confidence            378999999999999999998 5

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=97.34  E-value=0.005  Score=51.60  Aligned_cols=45  Identities=18%  Similarity=0.245  Sum_probs=28.3

Q ss_pred             CCCeeEEEEeCCCCCCH--HHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758          128 KRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK  172 (248)
Q Consensus       128 ~~~~~viiiDE~d~l~~--~~~~~ll~~le~~~~~~~~Il~t~~~~~  172 (248)
                      .....++++||+|.+..  .....+..+....+....+|+.|..+..
T Consensus       143 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~  189 (395)
T 3pey_A          143 LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD  189 (395)
T ss_dssp             CTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCH
T ss_pred             cccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCH
Confidence            34667999999986543  2233444455544556777777777653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.34  E-value=0.00013  Score=55.29  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++|.|++||||||+++.++..+
T Consensus         3 I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            3 IAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999976

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.33  E-value=0.00011  Score=55.64  Aligned_cols=23  Identities=35%  Similarity=0.596  Sum_probs=21.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.++..+
T Consensus         8 ~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            8 VVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999866

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.33  E-value=0.00013  Score=55.95  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=21.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.++..+
T Consensus        17 ~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           17 VIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999999865

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.33  E-value=0.00013  Score=56.98  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=21.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999876

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.32  E-value=6.7e-05  Score=58.98  Aligned_cols=22  Identities=41%  Similarity=0.652  Sum_probs=14.8

Q ss_pred             eeEEECCCCCCHHHHHHHHH-HH
Q 025758           36 HLLFYGPPGSGKKTLIMALL-RQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia-~~   57 (248)
                      .+.|.||+|+||||+++.++ +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            37799999999999999999 84

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=97.32  E-value=0.0029  Score=51.68  Aligned_cols=53  Identities=19%  Similarity=0.294  Sum_probs=33.0

Q ss_pred             CCeeEEEEeCCCCCCH--HHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~--~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ..-++++|||+|.|..  .....+..++...+.+..+|++|.....-...+...+
T Consensus       234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~  288 (300)
T 3fmo_B          234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV  288 (300)
T ss_dssp             GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred             hhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence            3567999999987643  2334444555555566778888777765444444443

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.32  E-value=9.8e-05  Score=57.85  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.8

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..++|.|++||||||+++.++..+
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            458999999999999999999865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.32  E-value=0.00013  Score=59.84  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=25.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCccccee---cccce
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV---ENKTW   73 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~---~~~~~   73 (248)
                      +.|.||||+|||||+++++  +..+..|.+..   .|++.
T Consensus       168 ~~l~G~sG~GKSTLln~l~--~~~~~~G~i~~~~~~G~~~  205 (302)
T 2yv5_A          168 CILAGPSGVGKSSILSRLT--GEELRTQEVSEKTERGRHT  205 (302)
T ss_dssp             EEEECSTTSSHHHHHHHHH--SCCCCCSCC---------C
T ss_pred             EEEECCCCCCHHHHHHHHH--HhhCcccccccccCCCCCc
Confidence            7899999999999999999  56777888877   66543

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.31  E-value=0.00061  Score=67.45  Aligned_cols=22  Identities=36%  Similarity=0.703  Sum_probs=20.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++++||||||||++|+.++.+-
T Consensus      1085 ~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A         1085 VEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHh
Confidence            8999999999999999999754

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=97.31  E-value=0.0054  Score=46.73  Aligned_cols=52  Identities=13%  Similarity=0.231  Sum_probs=31.8

Q ss_pred             CCeeEEEEeCCCCCC-HHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhh
Q 025758          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (248)
Q Consensus       129 ~~~~viiiDE~d~l~-~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR  180 (248)
                      ....++++||+|.+. ......+.+++...+.+..+++.|.....-...+.++
T Consensus       145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~  197 (206)
T 1vec_A          145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNS  197 (206)
T ss_dssp             TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred             ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHH
Confidence            466799999998543 3334445555555555667777777665444444443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.30  E-value=0.0026  Score=51.94  Aligned_cols=31  Identities=26%  Similarity=0.260  Sum_probs=24.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCccccee
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV   68 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~   68 (248)
                      +++.|++|+||||++..+|..+ .+..+.+.+
T Consensus       101 i~i~G~~G~GKTT~~~~la~~~-~~~g~~v~l  131 (297)
T 1j8m_F          101 IMLVGVQGTGKTTTAGKLAYFY-KKKGFKVGL  131 (297)
T ss_dssp             EEEECSSCSSTTHHHHHHHHHH-HHTTCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHH-HHCCCeEEE
Confidence            8889999999999999999865 344444443

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.30  E-value=0.00013  Score=56.68  Aligned_cols=23  Identities=22%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|++||||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999876

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.29  E-value=0.00013  Score=56.32  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=22.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      .++|.|++||||||+++.++..+..
T Consensus        12 ~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A           12 FIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4899999999999999999997643

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=97.29  E-value=0.0029  Score=51.02  Aligned_cols=40  Identities=10%  Similarity=0.068  Sum_probs=27.3

Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~  171 (248)
                      ....++|+||++.+...   .+..++........+++.|..+.
T Consensus       224 ~~~~~vIiDEaH~~~~~---~~~~il~~~~~~~~~l~lSATp~  263 (282)
T 1rif_A          224 SQFGMMMNDECHLATGK---SISSIISGLNNCMFKFGLSGSLR  263 (282)
T ss_dssp             GGEEEEEEETGGGCCHH---HHHHHTTTCTTCCEEEEECSSCC
T ss_pred             hhCCEEEEECCccCCcc---cHHHHHHHhhcCCeEEEEeCCCC
Confidence            36789999999988854   44555555444566777766664

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.28  E-value=0.00015  Score=57.92  Aligned_cols=23  Identities=39%  Similarity=0.572  Sum_probs=20.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|.||+||||||+++.+++.+
T Consensus        29 ~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           29 VITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            48899999999999999999655

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.28  E-value=0.00017  Score=55.59  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=22.4

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ..++|.|++||||||+++.++..+.
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3489999999999999999999764

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=97.27  E-value=0.0039  Score=48.25  Aligned_cols=53  Identities=9%  Similarity=0.249  Sum_probs=33.1

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ....++++||+|.+... ....+.+++...+....+++.|.....-...+.+++
T Consensus       154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~  207 (224)
T 1qde_A          154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKF  207 (224)
T ss_dssp             TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHH
T ss_pred             hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHH
Confidence            45679999999865332 234455566655556677777777665444554444

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.26  E-value=0.00021  Score=63.37  Aligned_cols=53  Identities=23%  Similarity=0.390  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccce-eccc
Q 025758           19 QDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK-VENK   71 (248)
Q Consensus        19 ~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~-~~~~   71 (248)
                      .++.+.++...+.  .+...+.|+|++||||||+++++++.+.....+.+. +++.
T Consensus       352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD  407 (552)
T 3cr8_A          352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD  407 (552)
T ss_dssp             HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred             cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence            3455555554321  122348899999999999999999976433322443 4443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.26  E-value=0.00018  Score=55.75  Aligned_cols=43  Identities=21%  Similarity=0.332  Sum_probs=34.5

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      -.+++..+.+.......+.+.+++.|++|+||||++..++..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3456666777777666666779999999999999999999875

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.25  E-value=0.00072  Score=52.32  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=19.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+++||.|+||||.+.-.+....
T Consensus        31 ~vitG~MgsGKTT~lL~~a~r~~   53 (214)
T 2j9r_A           31 EVICGSMFSGKSEELIRRVRRTQ   53 (214)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            67999999999999988887653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.24  E-value=0.00019  Score=54.00  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=21.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ..+|+||||+||||++.+|+..+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            378999999999999999998543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.24  E-value=0.0013  Score=56.30  Aligned_cols=33  Identities=21%  Similarity=0.158  Sum_probs=25.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      +++.|++|+||||++..+|..+. +..+.+.+.+
T Consensus       101 i~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd  133 (425)
T 2ffh_A          101 WFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVA  133 (425)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEee
Confidence            88899999999999999999664 4455554433

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.24  E-value=0.00024  Score=60.01  Aligned_cols=23  Identities=52%  Similarity=0.638  Sum_probs=21.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|+||||+||||+++++++.+
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            48899999999999999999854

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.23  E-value=0.0002  Score=55.41  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=21.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|.|++|+||||+++.+++.+.
T Consensus        27 ~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           27 TIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            488999999999999999999763

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.23  E-value=0.0002  Score=54.37  Aligned_cols=21  Identities=38%  Similarity=0.808  Sum_probs=19.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ++|+||+|+||||+++.+...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999998874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.23  E-value=0.00015  Score=55.59  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.5

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..++|.|++||||||+++.++..+
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            348999999999999999999854

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.23  E-value=0.00013  Score=61.48  Aligned_cols=26  Identities=31%  Similarity=0.465  Sum_probs=22.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGA   63 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~   63 (248)
                      +.|.||+|+||||+++++++ +..+..
T Consensus       173 ~~IvG~nGsGKSTLlk~L~g-l~~~~~  198 (365)
T 1lw7_A          173 VAILGGESSGKSVLVNKLAA-VFNTTS  198 (365)
T ss_dssp             EEEECCTTSHHHHHHHHHHH-HTTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHH-HhCCCc
Confidence            88999999999999999999 556555

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.22  E-value=0.0058  Score=47.91  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ..++|.|++|+||||++..+.+.
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHcCC
Confidence            34999999999999999999873

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.21  E-value=0.00022  Score=56.13  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=21.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|.||+||||||+++.+++.+
T Consensus        11 ~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           11 VVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999876

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=97.19  E-value=0.0013  Score=51.52  Aligned_cols=36  Identities=17%  Similarity=0.208  Sum_probs=25.9

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecC
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~  169 (248)
                      .+++|+|||+..+..  ...+.+.+.+  .+..+|++.-+
T Consensus        90 ~~dvViIDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~  125 (234)
T 2orv_A           90 GVAVIGIDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD  125 (234)
T ss_dssp             TCSEEEESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred             cCCEEEEEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence            467999999988863  5556666665  45678888766

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=97.19  E-value=0.0015  Score=50.80  Aligned_cols=52  Identities=13%  Similarity=0.245  Sum_probs=32.6

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR  180 (248)
                      ...+++++||+|.+... ....+.+++.....+..+++.|.....-...+..+
T Consensus       166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~  218 (228)
T 3iuy_A          166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALS  218 (228)
T ss_dssp             TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHT
T ss_pred             ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHH
Confidence            45679999999865432 24455566666666677777777665444444333

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.18  E-value=6e-05  Score=63.20  Aligned_cols=33  Identities=30%  Similarity=0.356  Sum_probs=23.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcC-CCcccceec
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKVE   69 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~-~~~~~~~~~   69 (248)
                      .+.|.||||+|||||++++++ +.. +..|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g-~~~~~~~G~I~~~  250 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLG-LQNEILTNDVSNV  250 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-CSSCCCCC-----
T ss_pred             EEEEECCCCccHHHHHHHHhc-cccccccCCcccc
Confidence            478999999999999999998 445 666666543

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=97.17  E-value=0.00055  Score=52.17  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=18.9

Q ss_pred             eEEECCCCCCHH-HHHHHHHHHH
Q 025758           37 LLFYGPPGSGKK-TLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKT-tla~~ia~~l   58 (248)
                      .+++||.|+||| .|++++....
T Consensus        23 ~fiyG~MgsGKTt~Ll~~i~n~~   45 (195)
T 1w4r_A           23 QVILGPMFSGKSTELMRRVRRFQ   45 (195)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            789999999999 7888877754

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=97.16  E-value=0.00094  Score=59.79  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=29.7

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      |..++..+...+..++ .++++.+|+|+|||.++-.++..+..
T Consensus       183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~  224 (590)
T 3h1t_A          183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWS  224 (590)
T ss_dssp             HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHh
Confidence            5555555555444433 45889999999999998888876643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.15  E-value=0.00032  Score=53.80  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=21.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+.|.|++||||||+++.+++.+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            478999999999999999999763

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.12  E-value=0.0038  Score=53.71  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=22.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      ++++|++|+||||++-.+|..+...
T Consensus       103 I~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A          103 VLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHh
Confidence            8899999999999999999877443

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.12  E-value=0.0023  Score=48.87  Aligned_cols=41  Identities=12%  Similarity=0.163  Sum_probs=20.9

Q ss_pred             ccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHH
Q 025758           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++...+.+.+.....+...+++.|++|+||||+++.+...
T Consensus        13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            34455555555544444445999999999999999999863

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.11  E-value=0.00054  Score=53.26  Aligned_cols=43  Identities=28%  Similarity=0.437  Sum_probs=33.1

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      ++...+.++..+...+.+.+++.|++|+||||++..++...+.
T Consensus        22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            3445566666666666666999999999999999999987643

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=97.10  E-value=0.0032  Score=50.32  Aligned_cols=50  Identities=14%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR  178 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~  178 (248)
                      .+.+++++||+|.+... ....+..++...+....+++.|.....-...+.
T Consensus       200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~  250 (262)
T 3ly5_A          200 KNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLA  250 (262)
T ss_dssp             TTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHH
T ss_pred             ccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHH
Confidence            35679999999875432 234455555655566777777776664444443

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.09  E-value=0.0002  Score=55.15  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +.+.|++|+||||+++.+++.
T Consensus        24 i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           24 IGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999984

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.08  E-value=0.00029  Score=53.81  Aligned_cols=21  Identities=33%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+.|+|++||||||+++.+++
T Consensus        10 ~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A           10 IIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999998

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.07  E-value=0.00036  Score=54.86  Aligned_cols=24  Identities=38%  Similarity=0.695  Sum_probs=21.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|.||+|+||||+++.+++.+.
T Consensus        28 ~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           28 FITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            389999999999999999999764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.07  E-value=0.0042  Score=46.08  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=19.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+||||+++.+++
T Consensus         6 ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999986

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.06  E-value=0.00012  Score=56.44  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +.|.|++||||||+++.+++.+.
T Consensus         3 I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            3 IAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999763

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.06  E-value=0.0028  Score=53.09  Aligned_cols=44  Identities=9%  Similarity=0.066  Sum_probs=28.4

Q ss_pred             CCeeEEEEe-CC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758          129 RGFKVLVLN-EV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (248)
Q Consensus       129 ~~~~viiiD-E~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~  172 (248)
                      .+.-++++| +. ..++...+..++..+.....+.++|++.|..+.
T Consensus       247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl  292 (357)
T 2e87_A          247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV  292 (357)
T ss_dssp             CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred             CCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence            366788888 54 456767666666666553335678888876553

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.05  E-value=0.0005  Score=51.34  Aligned_cols=26  Identities=23%  Similarity=0.176  Sum_probs=22.7

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+.+.|.|++||||||++..++..+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            34588999999999999999998764

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=97.05  E-value=0.012  Score=49.69  Aligned_cols=44  Identities=23%  Similarity=0.388  Sum_probs=27.4

Q ss_pred             CCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758          129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSK  172 (248)
Q Consensus       129 ~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~~~~Il~t~~~~~  172 (248)
                      ....++++||+|.+.  ......+..++.....+..+|+.|..+..
T Consensus       167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~  212 (412)
T 3fht_A          167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED  212 (412)
T ss_dssp             GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCH
T ss_pred             hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCH
Confidence            467899999998552  22333444455544556677777776653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.05  E-value=0.00036  Score=55.52  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=21.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .|.|.|++||||||+++.++..+.
T Consensus        24 iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            489999999999999999998663

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.03  E-value=0.0004  Score=53.06  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=20.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.|+|++||||||+++.++..+
T Consensus        15 IgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           15 IGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8899999999999999999864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.02  E-value=0.00036  Score=56.90  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=19.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ++|.|+|||||||+++.++..
T Consensus         5 I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            5 ILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999984

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.99  E-value=0.00042  Score=53.76  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+.|.|++||||||+++.+++
T Consensus         6 ~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            6 IVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999997

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.99  E-value=0.0009  Score=58.71  Aligned_cols=45  Identities=11%  Similarity=0.158  Sum_probs=33.7

Q ss_pred             cccHHHHHHHHHHhhc--CCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           16 IVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~--~~~~~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      +...++.+.+.+..++  .....++|.|.+||||||+++++|+.|..
T Consensus       375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            3456677777777643  12234999999999999999999998853

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=96.99  E-value=0.0031  Score=54.17  Aligned_cols=35  Identities=17%  Similarity=0.056  Sum_probs=25.0

Q ss_pred             eeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecC
Q 025758          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (248)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~  169 (248)
                      .+++|+||+.+++......++..+.    ...+|++...
T Consensus       235 ~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~  269 (446)
T 3vkw_A          235 FKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDT  269 (446)
T ss_dssp             CSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECT
T ss_pred             CCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCc
Confidence            6799999999999877766665543    2556666543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.98  E-value=0.00043  Score=52.75  Aligned_cols=22  Identities=27%  Similarity=0.587  Sum_probs=20.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+++.
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3899999999999999999984

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=96.97  E-value=0.0055  Score=48.04  Aligned_cols=53  Identities=15%  Similarity=0.276  Sum_probs=32.7

Q ss_pred             CCeeEEEEeCCCCCCH-HHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~-~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ...+++++||+|.+.. .....+.+++........+|++|.....-...+..++
T Consensus       172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~  225 (237)
T 3bor_A          172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKF  225 (237)
T ss_dssp             TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHH
T ss_pred             ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHH
Confidence            3567999999986532 2234455666665566778887777664444444443

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.96  E-value=0.00064  Score=51.04  Aligned_cols=26  Identities=35%  Similarity=0.517  Sum_probs=22.5

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+.+.|.|++|+||||+++.+++.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            34589999999999999999998653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.96  E-value=0.00057  Score=49.91  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      .+|+||||+||||++.++.-.+..
T Consensus        26 ~~I~G~NGsGKStil~Ai~~~l~g   49 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILVGLYW   49 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC
Confidence            789999999999999999875644

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.96  E-value=0.00039  Score=52.74  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +++.|++|+||||+++.+++..
T Consensus        32 v~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           32 VVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999999843

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.96  E-value=0.0011  Score=55.81  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +.+.-.+.-++...++++||+|+||||+++.+++.+.
T Consensus       163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            3444444555556799999999999999999998664

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.94  E-value=0.00027  Score=55.53  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=19.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +.|.|++|+||||+++.+++.
T Consensus        23 i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           23 VLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEECSTTSCHHHHHHTTGGG
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            899999999999999999983

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.93  E-value=0.011  Score=51.90  Aligned_cols=24  Identities=33%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|+|++|+||||++..+|..+.
T Consensus       103 vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W          103 VIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            389999999999999999998664

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.91  E-value=0.056  Score=46.47  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=20.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+.+.|+||+|||||++.+++.
T Consensus       182 kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999874

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=96.91  E-value=0.0046  Score=56.66  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=17.7

Q ss_pred             CeeEEECCCCCCHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALL   55 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia   55 (248)
                      .++++.||+|+|||+.+-..+
T Consensus        47 ~~~lv~apTGsGKT~~~~l~i   67 (715)
T 2va8_A           47 NRLLLTSPTGSGKTLIAEMGI   67 (715)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CcEEEEcCCCCcHHHHHHHHH
Confidence            459999999999999985544

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=96.90  E-value=0.0053  Score=53.36  Aligned_cols=46  Identities=22%  Similarity=0.364  Sum_probs=29.3

Q ss_pred             CCeeEEEEeCCCCCC--HHHHHHHHHHHHHhcCCeeEEEEecCCCccc
Q 025758          129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSKVT  174 (248)
Q Consensus       129 ~~~~viiiDE~d~l~--~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~  174 (248)
                      ....+++|||+|.+.  ......+..++.....+..+|+.|..+..-.
T Consensus       234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~  281 (479)
T 3fmp_B          234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV  281 (479)
T ss_dssp             GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHH
T ss_pred             ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHH
Confidence            467799999998552  2333444455555555677888877766433

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.90  E-value=0.00079  Score=52.97  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|.|++||||||+++.+++.+
T Consensus        18 ~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           18 QIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999999866

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.88  E-value=0.00057  Score=56.77  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=21.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+++.||+||||||+++.+|..+
T Consensus         9 lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcCcHHHHHHHHHHHc
Confidence            48899999999999999999976

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=96.86  E-value=0.0059  Score=47.13  Aligned_cols=53  Identities=8%  Similarity=0.159  Sum_probs=32.5

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ...+++++||+|.+... ....+.++++..+.+..+++.|.....-...+..+.
T Consensus       149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~  202 (219)
T 1q0u_A          149 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY  202 (219)
T ss_dssp             GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH
T ss_pred             CcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHH
Confidence            35678999999866432 233455555655556667777766665444555544

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.86  E-value=0.00044  Score=52.88  Aligned_cols=22  Identities=27%  Similarity=0.527  Sum_probs=20.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .++|.||+|+||||+|..+++.
T Consensus        36 ~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           36 GVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3899999999999999999974

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.85  E-value=0.006  Score=45.57  Aligned_cols=22  Identities=18%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3899999999999999999874

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.84  E-value=0.0012  Score=55.26  Aligned_cols=36  Identities=28%  Similarity=0.402  Sum_probs=26.5

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      .+.+.|.|+||+||||+.+.+++.+ .+..+++.+.+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~-~~~~~~v~V~~  109 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML-TERGHKLSVLA  109 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh-hhcCCeEEEEe
Confidence            3449999999999999999999854 33344444433

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=96.80  E-value=0.0044  Score=53.33  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=17.0

Q ss_pred             CeeEEECCCCCCHHHHH-HHHH
Q 025758           35 PHLLFYGPPGSGKKTLI-MALL   55 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla-~~ia   55 (248)
                      .++++.||+|+|||..+ ..+.
T Consensus         3 ~~~lv~a~TGsGKT~~~l~~~l   24 (431)
T 2v6i_A            3 ELTVLDLHPGAGKTRRVLPQLV   24 (431)
T ss_dssp             CEEEEECCTTSCTTTTHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            35899999999999986 4444

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=96.80  E-value=0.00087  Score=52.86  Aligned_cols=53  Identities=15%  Similarity=0.261  Sum_probs=33.0

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ...+++++||+|.+... ....+..+++..+.+..+++.|.....-...+..+.
T Consensus       175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~  228 (242)
T 3fe2_A          175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF  228 (242)
T ss_dssp             TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred             ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHH
Confidence            46679999999866432 244455566655566777777776654444444443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.80  E-value=0.00012  Score=60.15  Aligned_cols=32  Identities=25%  Similarity=0.449  Sum_probs=19.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCccccee
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV   68 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~   68 (248)
                      .+.|.||||+|||||++++++ +..+..|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g-~~~~~~G~I~~  206 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISP-ELGLRTNEISE  206 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC------------
T ss_pred             EEEEECCCCCCHHHHHHHhcc-cccccccceee
Confidence            388999999999999999998 44566666655

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.79  E-value=0.0083  Score=44.51  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3899999999999999999863

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.77  E-value=0.0005  Score=56.98  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=21.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.||+||||||++..+|+.+
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHC
Confidence            48999999999999999999865

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.76  E-value=0.00095  Score=51.64  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=25.0

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEec
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN  168 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~  168 (248)
                      +..+|+|||+..++++....+.++.+   .+.++|+..-
T Consensus       101 ~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~GL  136 (219)
T 3e2i_A          101 NVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAGL  136 (219)
T ss_dssp             TCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEEE
T ss_pred             CCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEeec
Confidence            56799999999999765555555553   3456666643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.76  E-value=0.0099  Score=44.45  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=19.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|++|+||||++..+++.
T Consensus        24 i~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           24 LVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            899999999999999999874

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=96.75  E-value=0.03  Score=46.85  Aligned_cols=44  Identities=16%  Similarity=0.329  Sum_probs=28.4

Q ss_pred             CCeeEEEEeCCCCCCH--HHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758          129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK  172 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~--~~~~~ll~~le~~~~~~~~Il~t~~~~~  172 (248)
                      ....++++||+|.+..  .....+.+++...+....+|+.|..+..
T Consensus       151 ~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~  196 (391)
T 1xti_A          151 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK  196 (391)
T ss_dssp             TTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCS
T ss_pred             cccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCH
Confidence            4667999999986642  4445555566555555667777666543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.0022  Score=48.23  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=20.7

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ..+++.|++|+||||++..+.+.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            35999999999999999999873

>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1

Probab=96.73  E-value=0.03  Score=54.10  Aligned_cols=39  Identities=15%  Similarity=0.103  Sum_probs=29.2

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHH
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      |..++..+...+..++...++++||.|+|||..+...+-
T Consensus       608 Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~  646 (1151)
T 2eyq_A          608 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF  646 (1151)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHH
Confidence            555666666655566666799999999999998876554

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19

Probab=96.72  E-value=0.015  Score=49.89  Aligned_cols=44  Identities=14%  Similarity=0.114  Sum_probs=28.5

Q ss_pred             CCCeeEEEEeCCCCCCH-HHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758          128 KRGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS  171 (248)
Q Consensus       128 ~~~~~viiiDE~d~l~~-~~~~~ll~~le~~~~~~~~Il~t~~~~  171 (248)
                      .....++|+||++.+.. .....+.+.+........+++.|..+.
T Consensus       123 ~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~  167 (494)
T 1wp9_A          123 LEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG  167 (494)
T ss_dssp             TTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC
T ss_pred             hhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC
Confidence            34667999999987752 234445555555555566777766664

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=96.72  E-value=0.0041  Score=49.27  Aligned_cols=53  Identities=15%  Similarity=0.305  Sum_probs=32.4

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ...+++++||+|.+... ....+.++++..+....+++.|.....-...+.+++
T Consensus       185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~  238 (249)
T 3ber_A          185 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA  238 (249)
T ss_dssp             TTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHH
T ss_pred             cccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHH
Confidence            35679999999865332 233455566655556667777776665444554443

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.71  E-value=0.00079  Score=54.58  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .|.|+|++||||||+++.++. +
T Consensus        77 iI~I~G~~GSGKSTva~~La~-l   98 (281)
T 2f6r_A           77 VLGLTGISGSGKSSVAQRLKN-L   98 (281)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH-H
T ss_pred             EEEEECCCCCCHHHHHHHHHH-C
Confidence            389999999999999999995 5

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=96.70  E-value=0.0093  Score=46.43  Aligned_cols=52  Identities=17%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             CCeeEEEEeCCCCCCHH--HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhh
Q 025758          129 RGFKVLVLNEVDKLSRE--AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~--~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR  180 (248)
                      ...+++++||+|.+...  -...+..+++..+....+++.|.....-...+..+
T Consensus       165 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~  218 (230)
T 2oxc_A          165 GSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTK  218 (230)
T ss_dssp             GGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTT
T ss_pred             ccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHH
Confidence            35679999999865221  23444555555555566777766655434444444

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=96.70  E-value=0.052  Score=45.58  Aligned_cols=43  Identities=12%  Similarity=0.288  Sum_probs=25.5

Q ss_pred             CCeeEEEEeCCCCCC-HHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS  171 (248)
Q Consensus       129 ~~~~viiiDE~d~l~-~~~~~~ll~~le~~~~~~~~Il~t~~~~  171 (248)
                      ....++++||+|.+. ......+..++........+++.|....
T Consensus       162 ~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~  205 (400)
T 1s2m_A          162 SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP  205 (400)
T ss_dssp             TTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred             ccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCC
Confidence            456899999998554 3333334444444444556666665554

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.70  E-value=0.0024  Score=57.89  Aligned_cols=42  Identities=19%  Similarity=0.401  Sum_probs=30.1

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      ++...+.+...+...  +..++.||||||||+++-.+..++..+
T Consensus       191 N~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~  232 (646)
T 4b3f_X          191 DTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ  232 (646)
T ss_dssp             CHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC
Confidence            666777777776532  347899999999998766666556543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.70  E-value=0.012  Score=43.44  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.4

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHH
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ...+++.|++|+||||+++.+..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34599999999999999999986

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.68  E-value=0.0064  Score=44.89  Aligned_cols=21  Identities=33%  Similarity=0.662  Sum_probs=19.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+||||+++.+.+
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            499999999999999999875

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.67  E-value=0.0012  Score=50.76  Aligned_cols=25  Identities=40%  Similarity=0.634  Sum_probs=22.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      .+|+||||+||||++.+|.-.+..+
T Consensus        26 ~~I~G~NgsGKStil~ai~~~l~g~   50 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILVGLYWP   50 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcCC
Confidence            7899999999999999999777653

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=96.67  E-value=0.018  Score=50.41  Aligned_cols=35  Identities=11%  Similarity=0.170  Sum_probs=24.8

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+.+..++..   ...++.||+|+|||..+..++....
T Consensus       119 ~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~~  153 (510)
T 2oca_A          119 KDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYL  153 (510)
T ss_dssp             HHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHHH
Confidence            3344444433   3589999999999999987776543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.67  E-value=0.011  Score=44.53  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3999999999999999999874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.67  E-value=0.00091  Score=49.89  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=19.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .++|.|++|+||||+|..+..
T Consensus        18 gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            499999999999999999986

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.66  E-value=0.01  Score=45.32  Aligned_cols=22  Identities=18%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3999999999999999999974

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.66  E-value=0.014  Score=44.77  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=20.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3999999999999999999873

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.66  E-value=0.0066  Score=60.27  Aligned_cols=22  Identities=36%  Similarity=0.703  Sum_probs=19.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.++||+||||||+|..++.+.
T Consensus      1434 iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A         1434 VEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            8999999999999998888654

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=96.65  E-value=0.0039  Score=57.16  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=18.4

Q ss_pred             CeeEEECCCCCCHHHHHH-HHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIM-ALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~-~ia~~l   58 (248)
                      .++++.||+|+|||+.+. .+...+
T Consensus        40 ~~~lv~apTGsGKT~~~~l~il~~~   64 (720)
T 2zj8_A           40 KNALISIPTASGKTLIAEIAMVHRI   64 (720)
T ss_dssp             CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred             CcEEEEcCCccHHHHHHHHHHHHHH
Confidence            459999999999999984 444333

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=96.64  E-value=0.0059  Score=50.61  Aligned_cols=44  Identities=14%  Similarity=0.328  Sum_probs=28.0

Q ss_pred             CCeeEEEEeCCCCCC-HHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSK  172 (248)
Q Consensus       129 ~~~~viiiDE~d~l~-~~~~~~ll~~le~~~~~~~~Il~t~~~~~  172 (248)
                      ....++++||+|.+. ......+.+++........+++.|..+..
T Consensus       146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~  190 (367)
T 1hv8_A          146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPR  190 (367)
T ss_dssp             TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCH
T ss_pred             ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCH
Confidence            456799999997653 22234455555555556677777776653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.64  E-value=0.0012  Score=51.08  Aligned_cols=23  Identities=22%  Similarity=0.499  Sum_probs=21.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|+|++||||||+++.++..+
T Consensus         5 ~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            5 NIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            48899999999999999999865

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.64  E-value=0.0013  Score=51.00  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=22.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      .+.|.|++|+||||.++.++..+..
T Consensus         8 ~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            8 FVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3889999999999999999998754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.63  E-value=0.0015  Score=51.14  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +.|.|+|||||||.++.++..+.
T Consensus        11 ~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eeeECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999999773

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.62  E-value=0.00091  Score=49.27  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+||||+++.+++
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            388999999999999999986

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.62  E-value=0.022  Score=42.50  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHH
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+.+++.|++|+||||+++.+.+
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFN   45 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHc
Confidence            34599999999999999999886

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.012  Score=43.32  Aligned_cols=22  Identities=23%  Similarity=0.513  Sum_probs=19.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            3999999999999999999873

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.59  E-value=0.0067  Score=45.57  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+++.|++|+||||+++.+.+.-
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            39999999999999999999754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.58  E-value=0.0014  Score=47.56  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.4

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +.+++.|++|+||||+++.+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999873

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.57  E-value=0.00076  Score=54.96  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=18.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+.+.||+||||||+++.++..+.
T Consensus         7 iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            488999999999999999998663

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.57  E-value=0.0022  Score=57.27  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=27.8

Q ss_pred             HHHHHHHHhh-cCCCCe-eEEECCCCCCHHHHHHHHHHHHc
Q 025758           21 IAQNLKKLVT-EQDCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        21 ~~~~l~~~~~-~~~~~~-ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +.+.++...+ .+..+. ++|+|++||||||+|+.++..+.
T Consensus       381 Vsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          381 VVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             HHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            3444444442 233333 89999999999999999999874

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.56  E-value=0.0018  Score=50.62  Aligned_cols=27  Identities=30%  Similarity=0.280  Sum_probs=23.2

Q ss_pred             CCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           33 DCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        33 ~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +...+.|.|++|+||||+++.++..+.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            334489999999999999999999774

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.56  E-value=0.024  Score=43.46  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             CCCCeeEEECCCCCCHHHHHHHHHH
Q 025758           32 QDCPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        32 ~~~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+.+.+++.|++|+||||++..+.+
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~   51 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCN   51 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            3445699999999999999999876

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.56  E-value=0.0013  Score=51.81  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=22.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+.|.|++|+||||.++.++..+.
T Consensus        29 ~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           29 FIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999999774

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=96.55  E-value=0.021  Score=44.73  Aligned_cols=51  Identities=20%  Similarity=0.138  Sum_probs=29.9

Q ss_pred             CCeeEEEEeCCCCCCH----HHHHHHHHHHHHh-cCCeeEEEEecCCCcccHHHhh
Q 025758          129 RGFKVLVLNEVDKLSR----EAQHSLRRTMEKY-SASCRLILCCNSSSKVTEAIRS  179 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~----~~~~~ll~~le~~-~~~~~~Il~t~~~~~~~~~l~s  179 (248)
                      .+..++++||+|.+..    .....+.+++... .....+++.|.....-...+..
T Consensus       174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~  229 (245)
T 3dkp_A          174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCK  229 (245)
T ss_dssp             TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHH
T ss_pred             ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHH
Confidence            4567999999987754    2344455555543 2345667776666543334433

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=96.54  E-value=0.0025  Score=49.84  Aligned_cols=52  Identities=15%  Similarity=0.302  Sum_probs=32.3

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR  180 (248)
                      ....++++||+|.+... ....+.++++..+....+++.|.....-...+.+.
T Consensus       170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~  222 (236)
T 2pl3_A          170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARL  222 (236)
T ss_dssp             TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHH
T ss_pred             ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHH
Confidence            35679999999865322 23455566666555666777776665544444443

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.53  E-value=0.018  Score=43.96  Aligned_cols=22  Identities=14%  Similarity=0.283  Sum_probs=19.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4999999999999999999863

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.52  E-value=0.0043  Score=51.93  Aligned_cols=28  Identities=32%  Similarity=0.399  Sum_probs=23.5

Q ss_pred             CCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           33 DCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        33 ~~~~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      +.+.+.|+|++|+||||++..++..+..
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~  105 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIE  105 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3445999999999999999999987643

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.52  E-value=0.13  Score=41.81  Aligned_cols=73  Identities=11%  Similarity=0.076  Sum_probs=39.7

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccH-----HHhhhh----heeeecCCCHHHHHHHHHH
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE-----AIRSRC----LNIRINSPTEEQIVKVLEF  200 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~-----~l~sR~----~~i~~~~~~~~~~~~il~~  200 (248)
                      +--++++|=-+.+... ...+++.+.+...+.++|++.|..+...+     ......    ..+.....+...+..++..
T Consensus        88 d~il~VvD~~~~~~~~-~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~  166 (301)
T 1wf3_A           88 NAVVWVVDLRHPPTPE-DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKAD  166 (301)
T ss_dssp             SEEEEEEETTSCCCHH-HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEEEECCCCCChH-HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHH
Confidence            5567777755655544 34555666654334667777777654321     111111    2345555556666666665


Q ss_pred             HHH
Q 025758          201 IAK  203 (248)
Q Consensus       201 ~~~  203 (248)
                      +..
T Consensus       167 l~~  169 (301)
T 1wf3_A          167 LLA  169 (301)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            554

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.51  E-value=0.0012  Score=51.84  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=19.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .|.|.|++|+||||.++.+++.+.
T Consensus        27 ~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           27 FITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             EEEEECCC---CHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999999873

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.50  E-value=0.052  Score=40.80  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=19.0

Q ss_pred             CeeEEECCCCCCHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ..+++.|++|+||||+++.+.+
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3499999999999999986665

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.50  E-value=0.0012  Score=49.47  Aligned_cols=20  Identities=45%  Similarity=0.813  Sum_probs=19.0

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+||||+++.+++
T Consensus         5 v~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            88999999999999999986

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.50  E-value=0.019  Score=42.99  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999974

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=96.50  E-value=0.0048  Score=44.90  Aligned_cols=53  Identities=23%  Similarity=0.380  Sum_probs=40.3

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CeeEEEEecCCCcccHHHhhhhhee
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +|+++++||| .++|+.....+.+.+.+... +..+|++||+. .+ ..+.+|+..+
T Consensus        81 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~-~~~~d~ii~l  135 (148)
T 1f2t_B           81 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-EL-KDAADHVIRI  135 (148)
T ss_dssp             SCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GG-GGGCSEEEEE
T ss_pred             CCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HH-HHhCCEEEEE
Confidence            5789999999 89999999999999988643 45678888876 43 3455555444

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.48  E-value=0.0014  Score=51.66  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|.|+.||||||+++.++..+
T Consensus         4 ~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            4 RLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            38899999999999999999976

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.47  E-value=0.0014  Score=49.04  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+||||+++.+++
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999986

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A

Probab=96.46  E-value=0.0085  Score=53.97  Aligned_cols=43  Identities=7%  Similarity=0.119  Sum_probs=27.1

Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHHhc-CCeeEEEEecCCC
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS  171 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~-~~~~~Il~t~~~~  171 (248)
                      .+..++||||+|.++......+..+++... .+..+|+.|..+.
T Consensus       276 ~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~  319 (618)
T 2whx_A          276 PNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP  319 (618)
T ss_dssp             CCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCT
T ss_pred             cCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCCc
Confidence            467899999999997654444433333322 4566777765553

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.45  E-value=0.022  Score=47.85  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +.+.+.|++|+||||+++.+++.
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~  202 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGL  202 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            34889999999999999999873

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=96.44  E-value=0.0092  Score=50.43  Aligned_cols=43  Identities=16%  Similarity=0.347  Sum_probs=28.7

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS  171 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~  171 (248)
                      ....++++||+|.+... ....+..++.....+..+|+.|..+.
T Consensus       182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  225 (414)
T 3eiq_A          182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP  225 (414)
T ss_dssp             TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC
T ss_pred             ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence            34679999999865322 23455666666666677888877764

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.43  E-value=0.0032  Score=53.43  Aligned_cols=89  Identities=18%  Similarity=0.134  Sum_probs=55.8

Q ss_pred             CCeeEEEEeCCCCCC----HHHHHHHHHHHHHhcC-CeeEEEEecCCCccc--------HHHhhhhheeeecCCCHHHHH
Q 025758          129 RGFKVLVLNEVDKLS----REAQHSLRRTMEKYSA-SCRLILCCNSSSKVT--------EAIRSRCLNIRINSPTEEQIV  195 (248)
Q Consensus       129 ~~~~viiiDE~d~l~----~~~~~~ll~~le~~~~-~~~~Il~t~~~~~~~--------~~l~sR~~~i~~~~~~~~~~~  195 (248)
                      ..+.++++||++.+-    +.....+.+.+.+.++ +..++++|+++..+.        .++.+.|...-|-+.+..+..
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~~~~~~  340 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQGEKDLE  340 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCCHHHHH
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCChhhHH
Confidence            457899999996553    4455666666666544 457888899988765        367777754333344455543


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHccc
Q 025758          196 KVLEFIAKKEGLQLPSGFATRLAEKSNR  223 (248)
Q Consensus       196 ~il~~~~~~~~~~~~~~~~~~l~~~~~g  223 (248)
                      .+..      .+.++++..+.|.....|
T Consensus       341 ~~~~------~~~ls~~e~~~l~~~~~G  362 (392)
T 4ag6_A          341 AITT------LMNLSEAEHDLLVNAKRG  362 (392)
T ss_dssp             HHHH------HTTCCHHHHHHHHTCCTT
T ss_pred             HHHH------HhCCCHHHHHhccCCCCc
Confidence            3322      234678888777655433

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.42  E-value=0.0016  Score=55.21  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=21.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +++.||+||||||++..+|..+.
T Consensus         5 i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            5 IVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHHT
T ss_pred             EEEECcchhhHHHHHHHHHHHCC
Confidence            78999999999999999999773

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.41  E-value=0.0035  Score=55.57  Aligned_cols=41  Identities=20%  Similarity=0.244  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhhc-CCCC-eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           19 QDIAQNLKKLVTE-QDCP-HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        19 ~~~~~~l~~~~~~-~~~~-~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++.+.+....++ ++.+ .++|+|++||||||+++.+++.+.
T Consensus       355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            4566777777632 2223 389999999999999999999774

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.38  E-value=0.0022  Score=46.87  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=20.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999874

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.37  E-value=0.017  Score=43.73  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999999873

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.36  E-value=0.0022  Score=56.61  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=21.5

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ++++|.||+||||+++.++..+.
T Consensus        38 IvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           38 IVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999998774

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.36  E-value=0.00053  Score=52.58  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=20.0

Q ss_pred             CeeEEECCCCCCHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ..+.|.|++|+||||+++.+++
T Consensus        27 ~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3499999999999999999986

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.35  E-value=0.0027  Score=49.32  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=22.5

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ..+.|.|++|+||||.++.++..+.
T Consensus         6 ~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            6 KLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3489999999999999999999874

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.34  E-value=0.00075  Score=54.02  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=21.5

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..|+|.|+.||||||+++.++..+
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            348999999999999999999865

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.33  E-value=0.0025  Score=46.39  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3899999999999999998863

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=96.33  E-value=0.0063  Score=54.91  Aligned_cols=40  Identities=23%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      ++.....+...+..   +..++.||||||||+++..++..+..
T Consensus       182 n~~Q~~av~~~l~~---~~~li~GppGTGKT~~~~~~i~~l~~  221 (624)
T 2gk6_A          182 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR  221 (624)
T ss_dssp             CHHHHHHHHHHHTC---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhcC---CCeEEECCCCCCHHHHHHHHHHHHHH
Confidence            55556666665532   45889999999999999888877654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.32  E-value=0.0022  Score=49.73  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=22.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      .|.|.|++|+||||.++.++..+..
T Consensus         5 ~i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            5 YIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4889999999999999999998743

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.32  E-value=0.0027  Score=53.27  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..+|+||||+||||++.+++...
T Consensus        28 ~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHhc
Confidence            37899999999999999999743

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=96.31  E-value=0.014  Score=53.40  Aligned_cols=43  Identities=19%  Similarity=0.298  Sum_probs=27.6

Q ss_pred             CCeeEEEEeCCCCCCH----HHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758          129 RGFKVLVLNEVDKLSR----EAQHSLRRTMEKYSASCRLILCCNSSS  171 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~----~~~~~ll~~le~~~~~~~~Il~t~~~~  171 (248)
                      .+..++|+||++.+..    .....++..+........+|+.|....
T Consensus       137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~  183 (702)
T 2p6r_A          137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP  183 (702)
T ss_dssp             GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT
T ss_pred             hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC
Confidence            3667999999987642    233445555554455677777776654

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=96.30  E-value=0.031  Score=45.60  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=17.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++++.+|+|+|||..+...+-
T Consensus        33 ~~lv~~~TGsGKT~~~~~~~~   53 (337)
T 2z0m_A           33 NVVVRAKTGSGKTAAYAIPIL   53 (337)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEcCCCCcHHHHHHHHHH
Confidence            599999999999998766664

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.28  E-value=0.0022  Score=46.60  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=19.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999999874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.28  E-value=0.0029  Score=46.76  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHH
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ...+++.|++|+||||+++.+.+
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            44599999999999999999986

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.27  E-value=0.0022  Score=55.22  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++++|++|+||||++..+|..+.
T Consensus       101 vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C          101 VILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999998663

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.27  E-value=0.0046  Score=50.90  Aligned_cols=25  Identities=16%  Similarity=0.315  Sum_probs=21.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      +++.|+||+||||++..+|......
T Consensus        71 ~li~G~pG~GKTtl~l~ia~~~a~~   95 (315)
T 3bh0_A           71 VLIAARPSMGKTAFALKQAKNMSDN   95 (315)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            8999999999999999999766443

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.26  E-value=0.0028  Score=46.33  Aligned_cols=22  Identities=18%  Similarity=0.526  Sum_probs=20.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3899999999999999999874

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.26  E-value=0.0028  Score=46.33  Aligned_cols=21  Identities=19%  Similarity=0.596  Sum_probs=19.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|++|+||||+++.+.+.
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999999863

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.26  E-value=0.0028  Score=46.14  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999999863

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.25  E-value=0.0021  Score=48.47  Aligned_cols=24  Identities=25%  Similarity=0.513  Sum_probs=21.1

Q ss_pred             CCCeeEEECCCCCCHHHHHHHHHH
Q 025758           33 DCPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        33 ~~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      +...+++.|++|+||||+++.+.+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            445699999999999999999986

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.24  E-value=0.0018  Score=50.91  Aligned_cols=21  Identities=29%  Similarity=0.577  Sum_probs=18.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|+||+|||+++.-+|..
T Consensus        33 ~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           33 VLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            899999999999999887643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.23  E-value=0.003  Score=46.63  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+||||+++.+.+
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999986

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.22  E-value=0.0031  Score=46.19  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+++.|++|+||||+++.+.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3899999999999999999863

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.22  E-value=0.0029  Score=46.60  Aligned_cols=21  Identities=29%  Similarity=0.589  Sum_probs=19.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+||||+++.+.+
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            489999999999999999875

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.22  E-value=0.0032  Score=47.51  Aligned_cols=23  Identities=17%  Similarity=0.460  Sum_probs=20.6

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ..+++.|++|+||||+++.+.+.
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            34999999999999999999974

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.22  E-value=0.033  Score=45.51  Aligned_cols=20  Identities=40%  Similarity=0.620  Sum_probs=19.0

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +.+.|++|+|||||+..+.+
T Consensus        13 v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A           13 VAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            99999999999999999886

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A

Probab=96.20  E-value=0.013  Score=50.60  Aligned_cols=41  Identities=10%  Similarity=0.150  Sum_probs=23.9

Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHH--hcCCeeEEEEecCC
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEK--YSASCRLILCCNSS  170 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~--~~~~~~~Il~t~~~  170 (248)
                      .+..++||||+|.++..... ++..+..  ...+..+|+.|..+
T Consensus       109 ~~~~~iViDEah~~~~~~~~-~~~~~~~~~~~~~~~~i~~SAT~  151 (451)
T 2jlq_A          109 PNYNLIVMDEAHFTDPCSVA-ARGYISTRVEMGEAAAIFMTATP  151 (451)
T ss_dssp             CCCSEEEEETTTCCSHHHHH-HHHHHHHHHHTTSCEEEEECSSC
T ss_pred             cCCCEEEEeCCccCCcchHH-HHHHHHHhhcCCCceEEEEccCC
Confidence            36679999999988654333 2222221  22345666666544

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.20  E-value=0.0032  Score=46.63  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ..+++.|++|+||||+++.+.+.
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            34999999999999999999863

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=96.20  E-value=0.071  Score=44.94  Aligned_cols=43  Identities=19%  Similarity=0.355  Sum_probs=28.1

Q ss_pred             CCeeEEEEeCCCCCC-HHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS  171 (248)
Q Consensus       129 ~~~~viiiDE~d~l~-~~~~~~ll~~le~~~~~~~~Il~t~~~~  171 (248)
                      ...+++++||+|.+. ......+.+++...+....+++.|..+.
T Consensus       178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~  221 (410)
T 2j0s_A          178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP  221 (410)
T ss_dssp             TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred             hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCC
Confidence            456799999998543 3334555666665555667777776654

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.19  E-value=0.003  Score=56.76  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=22.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .|+|+|.+||||||+++.++..+.
T Consensus        54 lIvLtGlsGSGKSTlAr~La~~L~   77 (630)
T 1x6v_B           54 TVWLTGLSGAGKTTVSMALEEYLV   77 (630)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            389999999999999999999773

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.18  E-value=0.0033  Score=45.83  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+||||+++.+.+
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            389999999999999999986

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=96.17  E-value=0.0032  Score=48.32  Aligned_cols=24  Identities=17%  Similarity=0.059  Sum_probs=22.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .|.|.|+.||||||+++.+|+.+.
T Consensus         8 iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            8 IIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999999874

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=96.16  E-value=0.012  Score=49.69  Aligned_cols=39  Identities=13%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      -.+.+...++=++...++++|++|+|||+++..|+..+.
T Consensus       162 GiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~  200 (427)
T 3l0o_A          162 STRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA  200 (427)
T ss_dssp             HHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence            344555555556777799999999999999999998664

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.16  E-value=0.0034  Score=54.00  Aligned_cols=26  Identities=35%  Similarity=0.538  Sum_probs=0.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGA   63 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~   63 (248)
                      .+|+||||+||||++.+++. +..+.+
T Consensus        29 ~~i~G~nG~GKstll~ai~~-~~~~~~   54 (430)
T 1w1w_A           29 TSIIGPNGSGKSNMMDAISF-VLGVRS   54 (430)
T ss_dssp             EEEECSTTSSHHHHHHHHHH-HTTC--
T ss_pred             EEEECCCCCCHHHHHHHHHh-hhcccc

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.16  E-value=0.0028  Score=46.43  Aligned_cols=21  Identities=24%  Similarity=0.706  Sum_probs=19.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+||||+++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            389999999999999999986

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.15  E-value=0.0034  Score=45.81  Aligned_cols=20  Identities=25%  Similarity=0.683  Sum_probs=19.1

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+||||+++.+.+
T Consensus         9 i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            89999999999999999986

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.14  E-value=0.0028  Score=46.35  Aligned_cols=21  Identities=29%  Similarity=0.667  Sum_probs=19.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+||||+++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            489999999999999999986

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.14  E-value=0.0033  Score=46.05  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=19.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+||||+++.+.+
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999874

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.12  E-value=0.0036  Score=45.53  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +++.|++|+||||+++.+.+.-
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1njfa_	239	c.37.1.20 (A:) delta prime subunit of DNA polymera	1e-35
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	1e-35
d1iqpa2	231	c.37.1.20 (A:2-232) Replication factor C {Archaeon	2e-32
d1sxjd2	237	c.37.1.20 (D:26-262) Replication factor C2 {Baker'	3e-29
d1sxjb2	224	c.37.1.20 (B:7-230) Replication factor C4 {Baker's	3e-26
d1sxjc2	227	c.37.1.20 (C:12-238) Replication factor C3 {Baker'	2e-24
d2gnoa2	198	c.37.1.20 (A:11-208) gamma subunit of DNA polymera	2e-19
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	5e-19
d1a5ta2	207	c.37.1.20 (A:1-207) delta prime subunit of DNA pol	4e-15
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	2e-13
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	3e-12
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	2e-08
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	1e-07
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	2e-05
d1qhla_	222	c.37.1.12 (A:) Cell division protein MukB {Escheri	0.001
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	0.002
d1tuea_	205	c.37.1.20 (A:) Replication protein E1 helicase dom	0.004

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (313), Expect = 1e-35
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 18/227 (7%)

Query: 5   DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGA 63
            K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +     
Sbjct: 4   RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL----- 58

Query: 64  EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-VVQEVIKEMAKNRP 122
                 N    I A    +      +     V+L   DA  + +    ++++  +     
Sbjct: 59  ------NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY--- 109

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
                +  FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRCL
Sbjct: 110 --APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 167

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 168 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 214

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  125 bits (313), Expect = 1e-35
 Identities = 96/244 (39%), Positives = 153/244 (62%), Gaps = 10/244 (4%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           WVDKYRPK+L+ +  ++++   LK L    +D PHLL YGP G+GKKT  MALL  +FGP
Sbjct: 1   WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 60

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G  ++K++ + +     + N  LEL  +SS  H+E++PSD G  DR V+QE++KE+A+  
Sbjct: 61  GVYRLKIDVRQFVT---ASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 117

Query: 122 PID-----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
            +D           +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +   
Sbjct: 118 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 177

Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETC 235
           I+S+CL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+ 
Sbjct: 178 IKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 237

Query: 236 RVQQ 239
            +  
Sbjct: 238 ALNN 241

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  116 bits (290), Expect = 2e-32
 Identities = 85/233 (36%), Positives = 122/233 (52%), Gaps = 32/233 (13%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK T  +AL R++FG  
Sbjct: 14  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN 73

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                                         N +EL+ SD    +  V++E +KE A+ +P
Sbjct: 74  ---------------------------WRHNFLELNASDERGIN--VIREKVKEFARTKP 104

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
           I   G   FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC 
Sbjct: 105 I---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 161

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
             R     +E I K L +IA+ EGL+L       +   +   +RRAI   +  
Sbjct: 162 IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAA 214

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (269), Expect = 3e-29
 Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 21/234 (8%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRPK LD+V         LKK +   + PH+LFYGPPG+GK + I+AL ++++GP 
Sbjct: 2   WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 61

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
             K    ++  +++A            S    + +         R  V +  K   +N P
Sbjct: 62  LMK----SRILELNA------------SDERGISIVREKVKNFARLTVSKPSKHDLENYP 105

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
                   +K+++L+E D ++ +AQ +LRRTME YS   R  L CN  +++ + + S+C 
Sbjct: 106 -----CPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 160

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
             R  +      +  L FI+++E ++   G   R+ + S   LRR I   ++  
Sbjct: 161 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSAS 214

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.7 bits (247), Expect = 3e-26
 Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 31/233 (13%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ L  ++ +++    L+++  + + PH++  G PG GK T +  L  ++ G  
Sbjct: 5   WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR- 63

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                                       S     L  + +  +   VV+  IK  A+ + 
Sbjct: 64  ----------------------------SYADGVLELNASDDRGIDVVRNQIKHFAQKKL 95

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
               GK   K+++L+E D ++  AQ +LRRTME YS S R    CN S+K+ E ++S+C 
Sbjct: 96  HLPPGK--HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 153

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
            +R +  ++E ++K L  I K E ++  +     +   +   +R+AI + ++ 
Sbjct: 154 ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 206

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.2 bits (235), Expect = 2e-24
 Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 32/236 (13%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           + WV+KYRP+TLD+V    ++   ++K V E   PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 2   LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 61

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                + +E       +  R ID                             V  ++   
Sbjct: 62  KNYSNMVLELNA----SDDRGID----------------------------VVRNQIKDF 89

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
                   +GFK+++L+E D ++  AQ++LRR +E+Y+ + R  +  N + K+T A+ S+
Sbjct: 90  ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 149

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
           C   R     +E I + +  +   E L+L       L E SN  +RR +   ++C+
Sbjct: 150 CTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 205

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 80.9 bits (199), Expect = 2e-19
 Identities = 29/190 (15%), Positives = 70/190 (36%), Gaps = 32/190 (16%)

Query: 20  DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79
           D  + LK+++ + +   +L  G   S  + + + L   V     +   V      ID   
Sbjct: 1   DQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLE----IDPEG 56

Query: 80  RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV 139
            NI ++                        ++  IK+     P         K +++++ 
Sbjct: 57  ENIGID-----------------------DIRT-IKDFLNYSPELYT----RKYVIVHDC 88

Query: 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLE 199
           ++++++A ++  + +E+      ++L       +   I+SR   + +N P E + +   +
Sbjct: 89  ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEK 148

Query: 200 FIAKKEGLQL 209
                E L L
Sbjct: 149 IGDLWEELPL 158

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.4 bits (199), Expect = 5e-19
 Identities = 43/267 (16%), Positives = 85/267 (31%), Gaps = 44/267 (16%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQD-----------------CPHLLFYGPP 43
            LW  KY P  L QV  ++     LK  +   +                     + YGPP
Sbjct: 2   KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 61

Query: 44  GSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103
           G GK T    + +++     E+   + ++  +                            
Sbjct: 62  GIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVK---------------------N 100

Query: 104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRL 163
             D   V    K   + + ++ K      V++++EVD +S   +  + +  +    +   
Sbjct: 101 ALDNMSVVGYFKHNEEAQNLNGK----HFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTP 156

Query: 164 ILCCNSSSK--VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS 221
           ++   +             CL+I+   P    I   L  IA +E  +L      RL + +
Sbjct: 157 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT 216

Query: 222 NRSLRRAILSFETCRVQQLRFTMPSVD 248
              +R+ I    T           +++
Sbjct: 217 RGDIRQVINLLSTISTTTKTINHENIN 243

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 69.8 bits (169), Expect = 4e-15
 Identities = 37/217 (17%), Positives = 65/217 (29%), Gaps = 18/217 (8%)

Query: 18  HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
            +   + L          H LL    PG G   LI AL R +               +  
Sbjct: 7   LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL------------CQQPQ 54

Query: 77  AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVL 136
                       L  A       + A  + +  +          +  +     G KV+ +
Sbjct: 55  GHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWV 114

Query: 137 NEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVK 196
            +   L+  A ++L +T+E+  A     L      ++   +RSRC    +  P E+  V 
Sbjct: 115 TDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVT 174

Query: 197 VLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
            L        + +           S  S   A+  F+
Sbjct: 175 WL-----SREVTMSQDALLAALRLSAGSPGAALALFQ 206

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 65.4 bits (158), Expect = 2e-13
 Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 30/234 (12%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLV-----TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +  ++    
Sbjct: 4   RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN- 62

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
              ++V +       G     L                 A   +   +  + +    +R 
Sbjct: 63  ---LRVTSGPAIEKPGDLAAIL-----------------ANSLEEGDILFIDEIHRLSRQ 102

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
            +       +  V++ V      A    R    +      +             +    +
Sbjct: 103 AEEHLYPAMEDFVMDIVIGQGPAA----RTIRLELPRFTLIGATTRPGLITAPLLSRFGI 158

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
              +   T E++ + +   A+  G+++    A  +  +S  ++R A   F   R
Sbjct: 159 VEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVR 212

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.9 bits (149), Expect = 3e-12
 Identities = 36/247 (14%), Positives = 86/247 (34%), Gaps = 33/247 (13%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLV-----TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           RPK+LD+ I  +++ + L   +       +   H+L  GPPG GK TL   +  ++    
Sbjct: 4   RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 63

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                         A                            +R  V  + +    N+ 
Sbjct: 64  HVTSGPVLVKQGDMAAILT----------------------SLERGDVLFIDEIHRLNKA 101

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR-C 181
           ++       +   ++ +      A     +++        L+     S  ++  +RSR  
Sbjct: 102 VEELLYSAIEDFQIDIMIGKGPSA-----KSIRIDIQPFTLVGATTRSGLLSSPLRSRFG 156

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR 241
           + + ++  T +++ ++++  A    +++    A  +A++S  + R AI   +  R     
Sbjct: 157 IILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTV 216

Query: 242 FTMPSVD 248
                ++
Sbjct: 217 VKADRIN 223

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 29/203 (14%), Positives = 51/203 (25%), Gaps = 38/203 (18%)

Query: 35  PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94
            + LF GP  SGK TL  ALL    G                            ++    
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGK------------------------ALNVNLPLD 190

Query: 95  VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------AQH 148
                         VV E +K            +       +N +D L            
Sbjct: 191 RLNFELGVAIDQFLVVFEDVKGTGGES------RDLPSGQGINNLDNLRDYLDGSVKVNL 244

Query: 149 SLRRTMEKYSASCRLILCCNSS-SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL 207
             +   ++       I+  N      T   R             +  ++  EF+ +K  +
Sbjct: 245 EKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRII 304

Query: 208 QLP-SGFATRLAEKSNRSLRRAI 229
           Q   +     +  +      ++I
Sbjct: 305 QSGIALLLMLIWYRPVAEFAQSI 327

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 19/158 (12%), Positives = 49/158 (31%), Gaps = 10/158 (6%)

Query: 6   KYRPKTLDQVIVHQD-IAQNLKKLVTEQDCP-----HLLFYGPPGSGKKTLIMALLRQVF 59
            Y P  L       + +A+     +                G  G GK TL    +++V 
Sbjct: 12  NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 71

Query: 60  GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
              A++     + +     + N+   L+ +       +     G     +++ ++  +  
Sbjct: 72  EAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVR--GAPALDILKALVDNLYV 129

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157
                       +   +    +++ E  ++L R  E+ 
Sbjct: 130 ENHYLLVIL--DEFQSMLSSPRIAAEDLYTLLRVHEEI 165

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 32/246 (13%), Positives = 54/246 (21%), Gaps = 27/246 (10%)

Query: 6   KYRPKTLDQVIVHQD-----IAQNLKKLVTEQDC--PHLLFYGPPGSGKKTLIMALLRQV 58
            Y PK L     H++     +   L   +       P     G PG+GK   +  L    
Sbjct: 12  SYVPKRL----PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 67

Query: 59  FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
                   +       I      I  E+    +        S   F    V     +++ 
Sbjct: 68  KDK--TTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLY 125

Query: 119 KNRPIDTKGKRGFKVLVLNE--------------VDKLSREAQHSLRRTMEKYSASCRLI 164
               +D        +L                     +       L              
Sbjct: 126 MFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKY 185

Query: 165 LCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS 224
           +   S     +         +           +L+ IA   G Q P       A  +   
Sbjct: 186 VIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 245

Query: 225 LRRAIL 230
           L R+  
Sbjct: 246 LYRSAY 251

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 21/195 (10%), Positives = 59/195 (30%), Gaps = 5/195 (2%)

Query: 38  LFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97
              G  G+GK T + A +  +                  +GSR+  L     +   +  L
Sbjct: 28  TLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSML 87

Query: 98  SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157
              ++  Q   V   + +   ++R +D K      + +  +  +L  E  +  +  +   
Sbjct: 88  DTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPL 147

Query: 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217
           +     +      +      +        +S   +  +      +  +  +        L
Sbjct: 148 NELKDKLE-----AMEGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASL 202

Query: 218 AEKSNRSLRRAILSF 232
               + ++ R++  +
Sbjct: 203 YGGISSAITRSLRDY 217

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 26/176 (14%)

Query: 37  LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96
           +L  GPP SGK  L   +  +   P  +                         S    + 
Sbjct: 43  VLLEGPPHSGKTALAAKIAEESNFPFIKIC-----------------------SPDKMIG 79

Query: 97  LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156
            S +      + +  +  K       +D   +    V +      L  +A   L +    
Sbjct: 80  FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP 139

Query: 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSP---TEEQIVKVLEFIAKKEGLQL 209
                 +I   +    + E       +  I+ P   T EQ+++ LE +   +  + 
Sbjct: 140 QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKER 195

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 20/75 (26%)

Query: 3  WVDKYRPKTLD-----QVIV----HQDIA--------QNLKKLVTEQDCPHLLFYGPPGS 45
          W+ ++R   +D     + IV    +Q I         ++  K   +++C  L+F GP  +
Sbjct: 8  WI-RFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNC--LVFCGPANT 64

Query: 46 GKKTLIMALLRQVFG 60
          GK    M+ +  + G
Sbjct: 65 GKSYFGMSFIHFIQG 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	100.0
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	100.0
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	100.0
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	100.0
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	100.0
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	100.0
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	100.0
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	100.0
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.97
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.96
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.92
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.87
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.87
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.84
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.83
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.82
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.8
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.77
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.75
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.74
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.68
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.67
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.64
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.64
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.62
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.62
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.61
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.6
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.59
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.59
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.59
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.58
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.58
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.58
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.54
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.53
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.52
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.52
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.52
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.49
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.48
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.48
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.45
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.44
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.39
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.38
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.31
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.26
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.26
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.25
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.18
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.05
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.9
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.73
d1tuea_	205	Replication protein E1 helicase domain {Human papi	98.65
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.59
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.58
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.54
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	98.31
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.25
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.23
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.2
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.19
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	98.16
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.15
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.15
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.14
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.11
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	98.09
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.09
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.06
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.05
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.04
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.04
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.02
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.01
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.01
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.0
d1okkd2	207	GTPase domain of the signal recognition particle r	97.99
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.98
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.96
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.96
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.96
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.95
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.93
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.91
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.89
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.88
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.88
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.88
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.85
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.85
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.83
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.83
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.79
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.77
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.77
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	97.75
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.74
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.73
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.69
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.67
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.67
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.67
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.63
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.59
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.58
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.53
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.51
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	97.5
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.42
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.37
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.36
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.36
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.3
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.3
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	97.29
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.27
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	97.25
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.18
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.14
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	97.14
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.13
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.13
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.12
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.11
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	97.1
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	97.1
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	97.05
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.04
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.02
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.01
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.0
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.97
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.96
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	96.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.94
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.94
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.93
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	96.93
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.92
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.91
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.91
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.89
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.87
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	96.86
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.85
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	96.82
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.76
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.7
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.67
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.67
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.67
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.66
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.62
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.59
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.59
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.58
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.56
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.56
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.55
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.51
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.5
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.49
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.48
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.45
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.45
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.4
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.39
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.38
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.37
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.36
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.31
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.3
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	96.29
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.28
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.28
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.26
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.25
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.25
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.22
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.2
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.19
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.16
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.16
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.16
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.16
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.12
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.12
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	96.08
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.06
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.05
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.04
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.02
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.01
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.01
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.98
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.96
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.95
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.94
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	95.91
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.89
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.88
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.88
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.86
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.85
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.84
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.83
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.81
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.81
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.78
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	95.78
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.76
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.76
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.75
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.7
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.69
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.69
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	95.68
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.56
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	95.53
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.49
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.49
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.48
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	95.48
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.47
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.44
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.36
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.35
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	95.3
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	95.29
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.21
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.16
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.11
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	95.1
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.09
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.07
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.02
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.02
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.92
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.92
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.76
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	94.67
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	94.46
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.39
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.3
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.27
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.22
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	94.11
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.04
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.95
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.86
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.36
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.33
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.32
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.26
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.1
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	92.9
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.61
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	92.53
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.44
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	92.07
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	91.83
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.81
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	91.01
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	90.88
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.87
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	90.79
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	90.5
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.48
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	89.99
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	89.35
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.34
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	89.33
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.28
d1jqlb_	140	delta subunit of DNA polymerase III, N-domain {Esc	88.92
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.92
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	88.41
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	88.29
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	88.25
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	88.1
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	87.99
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	87.94
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	87.77
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	87.55
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.28
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.89
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	86.83
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	86.59
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	86.45
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	86.19
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	85.93
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	85.48
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	85.41
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	84.66
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	84.49
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	84.31
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	84.07
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	83.81
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	83.62
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	83.55
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	83.44
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	82.73
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	81.03

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-42  Score=270.88  Aligned_cols=213  Identities=28%  Similarity=0.487  Sum_probs=177.6

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      |+|+|||||++|+|++||+++++.|+.|+.+++.+|++|+||||+||||+|+++|.++.+.....               
T Consensus         3 ~pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~---------------   67 (224)
T d1sxjb2           3 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYAD---------------   67 (224)
T ss_dssp             CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHH---------------
T ss_pred             CchHhHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhcccccc---------------
Confidence            69999999999999999999999999999999999999999999999999999999885533110               


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                                  ..+.....+..  ........+..+......  .....++++++||+|.+....++.|++.++++...
T Consensus        68 ------------~~~~~n~~~~~--~~~~i~~~~~~~~~~~~~--~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~  131 (224)
T d1sxjb2          68 ------------GVLELNASDDR--GIDVVRNQIKHFAQKKLH--LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNS  131 (224)
T ss_dssp             ------------HEEEECTTSCC--SHHHHHTHHHHHHHBCCC--CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT
T ss_pred             ------------ccccccccccC--CceehhhHHHHHHHhhcc--CCCcceEEEEEecccccchhHHHHHhhhccccccc
Confidence                        01233332221  122233334444433221  12456789999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  240 (248)
                      ..+++++++...++++++|||..++|++|+.+++..+|.+++.+|++.+++++++.|++.++||+|.+++.||.++....
T Consensus       132 ~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~~~~~  211 (224)
T d1sxjb2         132 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG  211 (224)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             eeeeeccCchhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876555


Q ss_pred             cccC
Q 025758          241 RFTM  244 (248)
Q Consensus       241 ~~~~  244 (248)
                      .++.
T Consensus       212 ~i~~  215 (224)
T d1sxjb2         212 LVNA  215 (224)
T ss_dssp             SBCH
T ss_pred             CcCH
Confidence            5544

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-41  Score=267.21  Aligned_cols=215  Identities=34%  Similarity=0.617  Sum_probs=176.9

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      .+|+|||||++|+|++||+++++.|+.|+..++.+|++|+||+|+||||+|+++|+++.+......              
T Consensus         2 ~pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~--------------   67 (227)
T d1sxjc2           2 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM--------------   67 (227)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH--------------
T ss_pred             CchhhhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcce--------------
Confidence            489999999999999999999999999999999999999999999999999999998865432110              


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~  160 (248)
                                   .......+..  ..................   ...+.++++|||+|.+....++.|++.++++...
T Consensus        68 -------------~~e~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~  129 (227)
T d1sxjc2          68 -------------VLELNASDDR--GIDVVRNQIKDFASTRQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKN  129 (227)
T ss_dssp             -------------EEEECTTSCC--SHHHHHTHHHHHHHBCCS---SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             -------------eEEecccccC--Ceeeeecchhhccccccc---cCCCeEEEEEeccccchhhHHHHHHHHhhhcccc
Confidence                         0122222111  111122223333333322   2446789999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhcc
Q 025758          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       161 ~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  240 (248)
                      +.++++++....++++++|||..+.|.+|+.+++.+++.+++.++++.+++++++.|++.+.||+|.++++||.+.....
T Consensus       130 ~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~~~  209 (227)
T d1sxjc2         130 TRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLD  209 (227)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTC
T ss_pred             eeeccccCcHHHhHHHHHHHHhhhccccccccccccccccccccccccCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887665


Q ss_pred             cccCCCC
Q 025758          241 RFTMPSV  247 (248)
Q Consensus       241 ~~~~~~v  247 (248)
                      ..+.++|
T Consensus       210 ~~~~~~I  216 (227)
T d1sxjc2         210 NPDEDEI  216 (227)
T ss_dssp             SSSCCCB
T ss_pred             CCCCCee
Confidence            5444544

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.8e-40  Score=262.33  Aligned_cols=222  Identities=22%  Similarity=0.301  Sum_probs=174.4

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      +++||||++|+|++||+++++.|..|+..++.+| ++|+||+|+||||+|++++..+.+.........+        .+.
T Consensus         2 ~~~KyrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~--------~~~   73 (239)
T d1njfa_           2 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG--------VCD   73 (239)
T ss_dssp             HHHHTCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCS--------CSH
T ss_pred             chhhhCCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccc--------cch
Confidence            5799999999999999999999999999999988 9999999999999999999998776532211100        000


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~  161 (248)
                      .+.........+.+++...+.  .....+++.++.+.. .+    ..+.++|+||||+|.|+..++++|++.+|+++.++
T Consensus        74 ~~~~i~~~~~~~~~~~~~~~~--~~i~~ir~~~~~~~~-~~----~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~  146 (239)
T d1njfa_          74 NCREIEQGRFVDLIEIDAASR--TKVEDTRDLLDNVQY-AP----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV  146 (239)
T ss_dssp             HHHHHHHTCCTTEEEEETTCS--SSHHHHHHHHHSCCC-SC----SSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTE
T ss_pred             HHHHHHcCCCCeEEEecchhc--CCHHHHHHHHHHHHh-cc----ccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCe
Confidence            001111111222334433221  111223333332211 11    24567899999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhc
Q 025758          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~  239 (248)
                      .||++||+...+.++++|||..+.|++|+.+++.+++.+++.++++.++++.++.|+..++||+|.++++|+.+...+
T Consensus       147 ~~il~tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~~  224 (239)
T d1njfa_         147 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG  224 (239)
T ss_dssp             EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCccccChhHhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998876544

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-38  Score=256.01  Aligned_cols=235  Identities=40%  Similarity=0.707  Sum_probs=174.9

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhhcCC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      |+|||+|++|+|++|++.+++.|+.++..++ .++++|+||+|+||||+|+++|..+..........+...+...+.   
T Consensus         1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~---   77 (252)
T d1sxje2           1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN---   77 (252)
T ss_dssp             CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred             CCcccCCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccccccccccc---
Confidence            9999999999999999999999999997765 556999999999999999999999876654443333322210000   


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCC-----CCCCeeEEEEeCCCCCCHHHHHHHHHHHHH
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTK-----GKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~viiiDE~d~l~~~~~~~ll~~le~  156 (248)
                      ....+................+........+.+............     .....++++|||+|.|....++.+++.+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~  157 (252)
T d1sxje2          78 RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK  157 (252)
T ss_dssp             -----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred             chhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhccccc
Confidence            001122222334445555554444444445555544433322111     134567999999999999999999999999


Q ss_pred             hcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHccccHHHHHHHHHHH
Q 025758          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEKSNRSLRRAILSFETC  235 (248)
Q Consensus       157 ~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~l~~~~~g~~r~~~~~l~~~  235 (248)
                      +..++.||++||+...++++++|||..++|++|+.+++.+++..++.++++.++ ++.++.|+..+.||+|.+++.||.+
T Consensus       158 ~~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~  237 (252)
T d1sxje2         158 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM  237 (252)
T ss_dssp             STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred             ccccccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999765 7889999999999999999999998


Q ss_pred             hhhcc
Q 025758          236 RVQQL  240 (248)
Q Consensus       236 ~~~~~  240 (248)
                      +..+.
T Consensus       238 ~~~~~  242 (252)
T d1sxje2         238 ALNNE  242 (252)
T ss_dssp             HHTTT
T ss_pred             HHcCC
Confidence            87655

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4.9e-40  Score=261.47  Aligned_cols=211  Identities=41%  Similarity=0.690  Sum_probs=173.5

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      +|+|||+|++|+|++|++++++.|+.|+++++.++++|+||||+||||+|+++|+++.+.....                
T Consensus        13 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~----------------   76 (231)
T d1iqpa2          13 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRH----------------   76 (231)
T ss_dssp             CHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHH----------------
T ss_pred             hHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCC----------------
Confidence            6999999999999999999999999999999999999999999999999999999886532110                


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCe
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~  161 (248)
                                 ..+++...+.  .......+...........   ....+.|+++||+|.+....++.|++.+++...+.
T Consensus        77 -----------~~~e~n~s~~--~~~~~~~~~~~~~~~~~~~---~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~  140 (231)
T d1iqpa2          77 -----------NFLELNASDE--RGINVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNV  140 (231)
T ss_dssp             -----------HEEEEETTCH--HHHHTTHHHHHHHHHSCCG---GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTE
T ss_pred             -----------CeeEEecCcc--cchhHHHHHHHHHHhhhhc---cCCCceEEeehhhhhcchhHHHHHhhhcccCCcce
Confidence                       0122222211  0111122222222222211   23467899999999999999999999999998889


Q ss_pred             eEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHHHhhhccc
Q 025758          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQLR  241 (248)
Q Consensus       162 ~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~  241 (248)
                      .+|+++|+...++++++|||..+.|++|+..++..++.+++.++++.+++++++.|++.++||+|.+++.|+.+......
T Consensus       141 ~~i~~~n~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~~~~~~~  220 (231)
T d1iqpa2         141 RFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKK  220 (231)
T ss_dssp             EEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSE
T ss_pred             EEEeccCChhhchHhHhCccccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876555


Q ss_pred             ccC
Q 025758          242 FTM  244 (248)
Q Consensus       242 ~~~  244 (248)
                      ++.
T Consensus       221 it~  223 (231)
T d1iqpa2         221 ITD  223 (231)
T ss_dssp             ECH
T ss_pred             cCH
Confidence            543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-38  Score=252.96  Aligned_cols=211  Identities=33%  Similarity=0.611  Sum_probs=168.5

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      +|+|||+|++|+|++|++++++.|+.|+..++.++++|+||+|+||||+++++|+++.+......               
T Consensus         1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~---------------   65 (237)
T d1sxjd2           1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS---------------   65 (237)
T ss_dssp             CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT---------------
T ss_pred             CcchhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCccccc---------------
Confidence            79999999999999999999999999999999999999999999999999999998743221100               


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCc-------CCCCCCeeEEEEeCCCCCCHHHHHHHHHHH
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-------TKGKRGFKVLVLNEVDKLSREAQHSLRRTM  154 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~viiiDE~d~l~~~~~~~ll~~l  154 (248)
                                 ...........  ........++.........       .......++++|||+|.+...+++.+++.+
T Consensus        66 -----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~  132 (237)
T d1sxjd2          66 -----------RILELNASDER--GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTM  132 (237)
T ss_dssp             -----------SEEEECSSSCC--CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHH
T ss_pred             -----------chhheeccccc--cchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhcc
Confidence                       00111111110  0111111122222111110       001346779999999999999999999999


Q ss_pred             HHhcCCeeEEEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758          155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (248)
Q Consensus       155 e~~~~~~~~Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~  234 (248)
                      +.+.....+|+++++...++++++|||..+.|++|+.+++.++|.+++.++++.+++++++.|++.++||+|.++++|+.
T Consensus       133 ~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~  212 (237)
T d1sxjd2         133 ETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQS  212 (237)
T ss_dssp             HHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99988899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhhcc
Q 025758          235 CRVQQL  240 (248)
Q Consensus       235 ~~~~~~  240 (248)
                      ++....
T Consensus       213 ~~~~~~  218 (237)
T d1sxjd2         213 ASKGAQ  218 (237)
T ss_dssp             THHHHH
T ss_pred             HHHhch
Confidence            876554

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.4e-34  Score=227.70  Aligned_cols=211  Identities=23%  Similarity=0.326  Sum_probs=153.9

Q ss_pred             CccccCCCCCcccccccHHHHHHHHHHhhc-----------------CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE   64 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l~~~~~~-----------------~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~   64 (248)
                      +|+|||+|++|+|++|+++.++.|..|+..                 +..++++|+||||+||||+|+++|+++.+.-  
T Consensus         3 lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~--   80 (253)
T d1sxja2           3 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI--   80 (253)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE--
T ss_pred             ccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhh--
Confidence            799999999999999999999999998743                 2345699999999999999999999774321  


Q ss_pred             cceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCC---------CcCCCCCCeeEEE
Q 025758           65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP---------IDTKGKRGFKVLV  135 (248)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~vii  135 (248)
                       ..++.                             .....  .......+........         ........+.+++
T Consensus        81 -~~~~~-----------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  128 (253)
T d1sxja2          81 -LEQNA-----------------------------SDVRS--KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVII  128 (253)
T ss_dssp             -EEECT-----------------------------TSCCC--HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEE
T ss_pred             -hcccc-----------------------------ccchh--hHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEE
Confidence             11111                             00000  0000000000000000         0011244678999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHh-cCCeeEEEEecCC-CcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 025758          136 LNEVDKLSREAQHSLRRTMEKY-SASCRLILCCNSS-SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF  213 (248)
Q Consensus       136 iDE~d~l~~~~~~~ll~~le~~-~~~~~~Il~t~~~-~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~  213 (248)
                      +||++.+....+..+..+++.. .....+++++++. ...++.+++||..+.|++|+.+++..++..++.+|++.++++.
T Consensus       129 ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~  208 (253)
T d1sxja2         129 MDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV  208 (253)
T ss_dssp             ECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH
T ss_pred             eeeccccccchhhhhHHHhhhhcccccccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHH
Confidence            9999998877766666666543 2334677776654 4577789999999999999999999999999999999999999


Q ss_pred             HHHHHHHccccHHHHHHHHHHHhhhcccccCCC
Q 025758          214 ATRLAEKSNRSLRRAILSFETCRVQQLRFTMPS  246 (248)
Q Consensus       214 ~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~~~~  246 (248)
                      ++.|++.++||+|.+++.|+.+......++.+.
T Consensus       209 l~~i~~~s~GDiR~ai~~L~~~~~~~~~i~~~~  241 (253)
T d1sxja2         209 IDRLIQTTRGDIRQVINLLSTISTTTKTINHEN  241 (253)
T ss_dssp             HHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCCHHH
Confidence            999999999999999999999988777666553

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-32  Score=212.55  Aligned_cols=199  Identities=20%  Similarity=0.213  Sum_probs=157.1

Q ss_pred             ccHHHHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        17 g~~~~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      +++.+.+.|...++.++++| ++|+||+|+||||+|+.+|..++|........++        .+..+........++..
T Consensus         6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~   77 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCG--------HCRGCQLMQAGTHPDYY   77 (207)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCS--------CSHHHHHHHHTCCTTEE
T ss_pred             ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhccccccccccccc--------ccchhhhhhhccccccc
Confidence            78899999999999999999 9999999999999999999999887654332222        22211222222334444


Q ss_pred             eeCCCCc-CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCccc
Q 025758           96 ELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT  174 (248)
Q Consensus        96 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~  174 (248)
                      .+.++.. .......+++.++.+.. .+    ..++.+|+||||+|.|..+++++|+++||+++.++.||++|+++..++
T Consensus        78 ~~~~~~~~~~i~~~~ir~l~~~~~~-~~----~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll  152 (207)
T d1a5ta2          78 TLAPEKGKNTLGVDAVREVTEKLNE-HA----RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLL  152 (207)
T ss_dssp             EECCCTTCSSBCHHHHHHHHHHTTS-CC----TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC
T ss_pred             hhhhhhcccccccchhhHHhhhhhh-cc----ccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhh
Confidence            5544433 23334445555554332 22    255789999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHH
Q 025758          175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (248)
Q Consensus       175 ~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~  233 (248)
                      ++++|||..+.|++++.+++..+|.     +++.++++.+..+++.++||+|.|+++||
T Consensus       153 ~tI~SRc~~i~~~~~~~~~~~~~L~-----~~~~~~~~~~~~i~~~s~Gs~r~al~~le  206 (207)
T d1a5ta2         153 ATLRSRCRLHYLAPPPEQYAVTWLS-----REVTMSQDALLAALRLSAGSPGAALALFQ  206 (207)
T ss_dssp             HHHHTTSEEEECCCCCHHHHHHHHH-----HHCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred             hhhcceeEEEecCCCCHHHHHHHHH-----HcCCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence            9999999999999999999999986     35567899999999999999999999886

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=7.5e-29  Score=197.20  Aligned_cols=187  Identities=20%  Similarity=0.272  Sum_probs=148.8

Q ss_pred             cCCCCCcccccccHHHHHHHHHHhh-----cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            6 KYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         6 ky~p~~~~~lig~~~~~~~l~~~~~-----~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      -.||++|+|++||+++++.|+.|+.     +...+++||+|||||||||+|+++|.++.++.                  
T Consensus         2 ~~RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~------------------   63 (238)
T d1in4a2           2 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI------------------   63 (238)
T ss_dssp             TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE------------------
T ss_pred             CCCCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCc------------------
Confidence            4799999999999999999999875     23467799999999999999999999874422                  


Q ss_pred             ccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc--
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--  158 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~--  158 (248)
                                    ..+......  ........+   .. .       ....++++||++.+++..++.++..++...  
T Consensus        64 --------------~~~~~~~~~--~~~~~~~~~---~~-~-------~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~  116 (238)
T d1in4a2          64 --------------HVTSGPVLV--KQGDMAAIL---TS-L-------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQID  116 (238)
T ss_dssp             --------------EEEETTTCC--SHHHHHHHH---HH-C-------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCC
T ss_pred             --------------ccccCcccc--cHHHHHHHH---Hh-h-------ccCCchHHHHHHHhhhHHHhhcccceeeeeee
Confidence                          111111111  111122222   22 1       234689999999999999999998887642  


Q ss_pred             ----------------CCeeEEEEecCCCcccHHHhhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 025758          159 ----------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS  221 (248)
Q Consensus       159 ----------------~~~~~Il~t~~~~~~~~~l~sR~~-~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~  221 (248)
                                      ....+|++|+++..+.+++++||. .+.|++|+.+++..+++.++..+++.++++.+..+++.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s  196 (238)
T d1in4a2         117 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRS  196 (238)
T ss_dssp             C---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTS
T ss_pred             eeecCcccccccccCCCCeEEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhC
Confidence                            235688899999999999999995 679999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHhh
Q 025758          222 NRSLRRAILSFETCRV  237 (248)
Q Consensus       222 ~g~~r~~~~~l~~~~~  237 (248)
                      +||+|.++++|+.+..
T Consensus       197 ~gd~R~ai~~l~~~~~  212 (238)
T d1in4a2         197 RGTPRIAIRLTKRVRD  212 (238)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999987653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=2.6e-28  Score=194.26  Aligned_cols=189  Identities=23%  Similarity=0.294  Sum_probs=145.7

Q ss_pred             CCCCCcccccccHHHHHHHHHHhhc-----CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc
Q 025758            7 YRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (248)
Q Consensus         7 y~p~~~~~lig~~~~~~~l~~~~~~-----~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
                      .||++|+|++||+++++.|+.|+..     ...+++||+||||+||||+|+++|+++..+.                   
T Consensus         3 ~RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~-------------------   63 (239)
T d1ixsb2           3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL-------------------   63 (239)
T ss_dssp             CCCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCE-------------------
T ss_pred             cCCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCe-------------------
Confidence            5999999999999999999988753     2366799999999999999999999773321                   


Q ss_pred             cccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc---
Q 025758           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (248)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~---  158 (248)
                                   .........  .   ...........       .....++++||++.+.+..+..++..++...   
T Consensus        64 -------------~~~~~~~~~--~---~~~~~~~~~~~-------~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~  118 (239)
T d1ixsb2          64 -------------RVTSGPAIE--K---PGDLAAILANS-------LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI  118 (239)
T ss_dssp             -------------EEEETTTCC--S---HHHHHHHHHTT-------CCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEE
T ss_pred             -------------EeccCCccc--c---chhhHHHHHhh-------ccCCCeeeeecccccchhHHHhhhhhhhhhhhhh
Confidence                         111111111  1   11111112211       1244699999999999999999999998642   


Q ss_pred             ---------------CCeeEEEEecCCCc-ccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Q 025758          159 ---------------ASCRLILCCNSSSK-VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN  222 (248)
Q Consensus       159 ---------------~~~~~Il~t~~~~~-~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~  222 (248)
                                     ....+|++++++.. ..+.++++|..+.|.+|+.+++..++.+.+..+++.++++.+..+++.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~  198 (239)
T d1ixsb2         119 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSR  198 (239)
T ss_dssp             ECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTT
T ss_pred             hhccchhhhhcccCCCCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcC
Confidence                           12347777877764 55677777899999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHhhhc
Q 025758          223 RSLRRAILSFETCRVQQ  239 (248)
Q Consensus       223 g~~r~~~~~l~~~~~~~  239 (248)
                      ||+|.++++|+.+...+
T Consensus       199 gd~R~a~~~l~~~~~~a  215 (239)
T d1ixsb2         199 GTMRVAKRLFRRVRDFA  215 (239)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999876433

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=2e-24  Score=166.19  Aligned_cols=182  Identities=14%  Similarity=0.183  Sum_probs=128.5

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (248)
                      ..+.++++++.+..++++|+||+|+|||++|..++..+.....                          .+++.+.+.++
T Consensus         2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~--------------------------~h~D~~~i~~~   55 (198)
T d2gnoa2           2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP--------------------------KASDVLEIDPE   55 (198)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC--------------------------CTTTEEEECCS
T ss_pred             HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccc--------------------------CCCCEEEEeCC
Confidence            3567889998888888999999999999999999997633221                          12334566654


Q ss_pred             CcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhh
Q 025758          101 DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (248)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR  180 (248)
                      +. ...-..+++..+.+. ..+.    .++++|+||||+|.|+.+++++|+|+||+|+.++.||++|+++..++++++||
T Consensus        56 ~~-~I~Id~IR~i~~~~~-~~~~----~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SR  129 (198)
T d2gnoa2          56 GE-NIGIDDIRTIKDFLN-YSPE----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR  129 (198)
T ss_dssp             SS-CBCHHHHHHHHHHHT-SCCS----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred             cC-CCCHHHHHHHHHHHh-hCcc----cCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcc
Confidence            32 234445666555443 4443    56889999999999999999999999999999999999999999999999999


Q ss_pred             hheeeecCCCHHHHHHHHHHH----HHHc-----CCCCCHHHHHHHHHHccccHHHHHHHHHHHhh
Q 025758          181 CLNIRINSPTEEQIVKVLEFI----AKKE-----GLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (248)
Q Consensus       181 ~~~i~~~~~~~~~~~~il~~~----~~~~-----~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~  237 (248)
                      |+.+.|++|..  ...++...    .+..     .+....+....++....+ ++..+++++....
T Consensus       130 C~~i~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ld~~~~  192 (198)
T d2gnoa2         130 VFRVVVNVPKE--FRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSG-LMESLKVLETEKL  192 (198)
T ss_dssp             SEEEECCCCHH--HHHHHHHHHTTHHHHCGGGGTCHHHHHHHHHHHHHHHHH-HHHHHHHSCHHHH
T ss_pred             eEEEeCCCchH--HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHhhC-HHHHHHHHHHHHH
Confidence            99999987754  22222222    1111     111223344444444444 6667766665543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=3.6e-22  Score=158.59  Aligned_cols=190  Identities=19%  Similarity=0.270  Sum_probs=125.3

Q ss_pred             CCCcccccccHHHHHHHHHHhh---------c-C-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758            9 PKTLDQVIVHQDIAQNLKKLVT---------E-Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus         9 p~~~~~lig~~~~~~~l~~~~~---------~-~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      +.+|+|++|.+++++.|+..+.         . | +.+ ++||+||||||||++|+++|+++..+   .+.+++..+   
T Consensus         5 ~~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~---~~~i~~~~l---   78 (247)
T d1ixza_           5 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASGSDF---   78 (247)
T ss_dssp             SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHHHH---
T ss_pred             CCcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCC---EEEEEhHHh---
Confidence            4599999999999988876542         1 1 223 49999999999999999999976321   111111100   


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC-----------H-
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------R-  144 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~-  144 (248)
                                        ..   ...+ .....+.+.++...         ...|.||+|||+|.+.           . 
T Consensus        79 ------------------~~---~~~g-~~~~~l~~~f~~a~---------~~~p~Ii~iDeid~l~~~r~~~~~~~~~~  127 (247)
T d1ixza_          79 ------------------VE---MFVG-VGAARVRDLFETAK---------RHAPCIVFIDEIDAVGRKRGSGVGGGNDE  127 (247)
T ss_dssp             ------------------HH---SCTT-HHHHHHHHHHHHHT---------TSSSEEEEEETHHHHHC---------CHH
T ss_pred             ------------------hh---cccc-HHHHHHHHHHHHHH---------HcCCEEEEEEChhhhCccCCCCCCCCcHH
Confidence                              00   0001 11122344444332         2367899999998652           1 


Q ss_pred             --HHHHHHHHHHHHhcCC--eeEEEEecCCCcccHHHh--hhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758          145 --EAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIR--SRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (248)
Q Consensus       145 --~~~~~ll~~le~~~~~--~~~Il~t~~~~~~~~~l~--sR~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l  217 (248)
                        ...+.|+..++....+  ..+|.+||++..+.++++  +|+ ..|.|++|+.++..+++...+.+.++. ++..++.+
T Consensus       128 ~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~l  206 (247)
T d1ixza_         128 REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALL  206 (247)
T ss_dssp             HHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCc-cccCHHHH
Confidence              1245677777755433  456678999999999997  478 599999999999999999888776654 33347888


Q ss_pred             HHHccc-cHHHHHHHHHHHh
Q 025758          218 AEKSNR-SLRRAILSFETCR  236 (248)
Q Consensus       218 ~~~~~g-~~r~~~~~l~~~~  236 (248)
                      ++.+.| +.+++-++++.+.
T Consensus       207 a~~t~g~s~~di~~lv~~A~  226 (247)
T d1ixza_         207 AKRTPGFVGADLENLLNEAA  226 (247)
T ss_dssp             HHTCTTCCHHHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHH
Confidence            888765 4555555555544

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.5e-21  Score=153.53  Aligned_cols=191  Identities=17%  Similarity=0.236  Sum_probs=128.7

Q ss_pred             CCCCcccccccHHHHHHHHHHhh-----------cCCC-CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceee
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVT-----------EQDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~-----------~~~~-~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~   75 (248)
                      -..||+|++|.+.+++.|.+.+.           ..+. .++||+||||||||++|+++|.++..+-   +.+++..+  
T Consensus         7 ~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~---~~i~~~~l--   81 (256)
T d1lv7a_           7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISGSDF--   81 (256)
T ss_dssp             SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEECSCSS--
T ss_pred             CCCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCE---EEEEhHHh--
Confidence            45799999999999988876542           1222 3499999999999999999999773211   11111000  


Q ss_pred             ccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----------
Q 025758           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------  144 (248)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------  144 (248)
                                         .   ....+ .....+.++++...         ...|.|++|||+|.+..           
T Consensus        82 -------------------~---~~~~g-~~~~~l~~~f~~A~---------~~~P~il~iDeiD~l~~~r~~~~~~~~~  129 (256)
T d1lv7a_          82 -------------------V---EMFVG-VGASRVRDMFEQAK---------KAAPCIIFIDEIDAVGRQRGAGLGGGHD  129 (256)
T ss_dssp             -------------------T---TSCCC-CCHHHHHHHHHHHH---------TTCSEEEEETTHHHHTCCCSTTSCCTTC
T ss_pred             -------------------h---hcchh-HHHHHHHHHHHHHH---------HcCCEEEEEEChhhhCccCCCCCCCCcH
Confidence                               0   00011 11223555565443         23677999999976421           


Q ss_pred             ---HHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 025758          145 ---EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (248)
Q Consensus       145 ---~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~  216 (248)
                         ...+.|+..++....  +..+|.+||++..+.+++++  |+ ..+.|++|+.+++.+++...+.+.++. .+..+..
T Consensus       130 ~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~  208 (256)
T d1lv7a_         130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAI  208 (256)
T ss_dssp             HHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-cccCHHH
Confidence               134567777775433  35678889999999999985  77 699999999999999999888766555 3445788


Q ss_pred             HHHHccc-cHHHHHHHHHHHh
Q 025758          217 LAEKSNR-SLRRAILSFETCR  236 (248)
Q Consensus       217 l~~~~~g-~~r~~~~~l~~~~  236 (248)
                      +++.+.| +.+++-++++.+.
T Consensus       209 la~~t~G~s~adi~~l~~~A~  229 (256)
T d1lv7a_         209 IARGTPGFSGADLANLVNEAA  229 (256)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHH
T ss_pred             HHHhCCCCCHHHHHHHHHHHH
Confidence            8887765 5666666666554

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.84  E-value=4.4e-20  Score=143.37  Aligned_cols=190  Identities=17%  Similarity=0.222  Sum_probs=131.2

Q ss_pred             CCccccc-c--cHHHHHHHHHHhhcCCCC--eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           10 KTLDQVI-V--HQDIAQNLKKLVTEQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        10 ~~~~~li-g--~~~~~~~l~~~~~~~~~~--~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      .||++++ |  ++.+.+.+.++++.....  .++|+||+|+|||+|+++++.++..+....+.+....+.          
T Consensus         7 ~tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~----------   76 (213)
T d1l8qa2           7 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA----------   76 (213)
T ss_dssp             CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH----------
T ss_pred             CChhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHH----------
Confidence            4889986 4  777888888888654333  399999999999999999999874433221111110000          


Q ss_pred             ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--HHHHHHHHHHHHHhc-CCe
Q 025758           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYS-ASC  161 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~ll~~le~~~-~~~  161 (248)
                              ..      ...........+....+.           ..++++||+++.+.  +..+..|+.+++... .+.
T Consensus        77 --------~~------~~~~~~~~~~~~~~~~~~-----------~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~  131 (213)
T d1l8qa2          77 --------QA------MVEHLKKGTINEFRNMYK-----------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEK  131 (213)
T ss_dssp             --------HH------HHHHHHHTCHHHHHHHHH-----------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             --------HH------HHHHHHccchhhHHHHHh-----------hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccc
Confidence                    00      000000000111112111           45699999998773  677889999998764 456


Q ss_pred             eEEEEecCCC----cccHHHhhhh---heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccccHHHHHHHHHH
Q 025758          162 RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (248)
Q Consensus       162 ~~Il~t~~~~----~~~~~l~sR~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~  234 (248)
                      .+|++++.+.    ...+.++||+   .++.++ |+.+.+.+++++.+..+|+.++++++++|+++. +|+|++...|+.
T Consensus       132 ~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~  209 (213)
T d1l8qa2         132 QIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKL  209 (213)
T ss_dssp             EEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHH
T ss_pred             eEEEecCCcchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CcHHHHHHHHHH
Confidence            7777877664    4678999998   467775 677889999999999999999999999999997 578888777766


Q ss_pred             Hh
Q 025758          235 CR  236 (248)
Q Consensus       235 ~~  236 (248)
                      +.
T Consensus       210 l~  211 (213)
T d1l8qa2         210 IK  211 (213)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.83  E-value=6.7e-19  Score=141.17  Aligned_cols=218  Identities=17%  Similarity=0.212  Sum_probs=137.0

Q ss_pred             ccccCCCCCcccccccHHHHHHHHHHhh----c-C-CCCeeEEECCCCCCHHHHHHHHHHHHcCCCcc-cceecccceee
Q 025758            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT----E-Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-KVKVENKTWKI   75 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~~~~~l~~~~~----~-~-~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~-~~~~~~~~~~~   75 (248)
                      +...|+|++   ++|.+..++.+..++.    + + ..++++|+||||||||++++.++..+.....- .+...+..+. 
T Consensus         9 l~~~y~p~~---l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~-   84 (276)
T d1fnna2           9 FSPSYVPKR---LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR-   84 (276)
T ss_dssp             GSTTCCCSC---CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC-
T ss_pred             CCCCCCCCC---CCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhh-
Confidence            567899964   5887776666666653    2 2 34569999999999999999999977433211 1111110000 


Q ss_pred             ccCCcccccceeee-cccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHH
Q 025758           76 DAGSRNIDLELTTL-SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM  154 (248)
Q Consensus        76 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~l  154 (248)
                           .   ..... .............+...........+....        .....+.++|+++.+.......+...+
T Consensus        85 -----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~~~~~~~~~~~  148 (276)
T d1fnna2          85 -----N---FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE--------RDLYMFLVLDDAFNLAPDILSTFIRLG  148 (276)
T ss_dssp             -----S---HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--------TTCCEEEEEETGGGSCHHHHHHHHHHT
T ss_pred             -----h---hhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhh--------cccccccchhHHHHhhhhhhhhHHHHH
Confidence                 0   00000 000011111112222222223333333333        235668899999988877766666655


Q ss_pred             HHh----cCCeeEEEEecCCC---cccHHHhhhh--heeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc--
Q 025758          155 EKY----SASCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS--  221 (248)
Q Consensus       155 e~~----~~~~~~Il~t~~~~---~~~~~l~sR~--~~i~~~~~~~~~~~~il~~~~~~~--~~~~~~~~~~~l~~~~--  221 (248)
                      +..    .....+|.+++...   .+.+.+.+|+  ..+.|++|+.+++.+++..++...  ...+++++++.+++.+  
T Consensus       149 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~  228 (276)
T d1fnna2         149 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA  228 (276)
T ss_dssp             TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred             hccccccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhh
Confidence            432    22345777777653   5677888888  469999999999999999988763  4458899999998753  


Q ss_pred             -------cccHHHHHHHHHHHhhhcc
Q 025758          222 -------NRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       222 -------~g~~r~~~~~l~~~~~~~~  240 (248)
                             .||+|.++++++.+...+.
T Consensus       229 ~~~~~~~~G~~R~a~~ll~~a~~~A~  254 (276)
T d1fnna2         229 QTPLDTNRGDARLAIDILYRSAYAAQ  254 (276)
T ss_dssp             SSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence                   7999999999988765544

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=6.5e-20  Score=146.69  Aligned_cols=185  Identities=17%  Similarity=0.239  Sum_probs=122.9

Q ss_pred             CCcccccccHHHHHHHHHHhh----------c-C-CCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758           10 KTLDQVIVHQDIAQNLKKLVT----------E-Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~----------~-~-~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      .+|+|+.|.+.+++.|+.++.          . | ..+ ++||+||||||||++++++|.++..+-              
T Consensus         1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~--------------   66 (258)
T d1e32a2           1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF--------------   66 (258)
T ss_dssp             CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEE--------------
T ss_pred             CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeE--------------
Confidence            379999999999999888652          1 2 233 499999999999999999999652210              


Q ss_pred             cCCcccccceeeecccceeeeCCCCc-C--c-chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH-------
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDA-G--F-QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-------  145 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-------  145 (248)
                                        +.+.+... .  . .........++....         ..|.|++|||+|.+...       
T Consensus        67 ------------------~~i~~~~l~~~~~g~~~~~l~~~f~~A~~---------~~p~il~iDeid~l~~~r~~~~~~  119 (258)
T d1e32a2          67 ------------------FLINGPEIMSKLAGESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGE  119 (258)
T ss_dssp             ------------------EEECHHHHTTSCTTHHHHHHHHHHHHHHH---------TCSEEEEESSGGGTCCHHHHCCCT
T ss_pred             ------------------EEEEchhhcccccccHHHHHHHHHHHHHh---------cCCeEEEehhhhhhccCCCCCCCc
Confidence                              11111110 0  0 112223444443332         35779999999887422       


Q ss_pred             ----HHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 025758          146 ----AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (248)
Q Consensus       146 ----~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~  216 (248)
                          ....++..++..  ..+..+|.+||++..+.+++++  |+ ..|.|+.|+.++...++...+.+..+. ++..++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~  198 (258)
T d1e32a2         120 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQ  198 (258)
T ss_dssp             THHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHH
T ss_pred             hHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccc-cccchhh
Confidence                223444444433  2335678899999999999987  77 789999999999999999887655443 2334888


Q ss_pred             HHHHccc-cHHHHHHHHHHHh
Q 025758          217 LAEKSNR-SLRRAILSFETCR  236 (248)
Q Consensus       217 l~~~~~g-~~r~~~~~l~~~~  236 (248)
                      |++.+.| +.+++-++++.++
T Consensus       199 la~~t~G~s~adl~~lv~~A~  219 (258)
T d1e32a2         199 VANETHGHVGADLAALCSEAA  219 (258)
T ss_dssp             HHHHCTTCCHHHHHHHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHH
Confidence            9988876 4555555555443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.80  E-value=3.8e-19  Score=143.40  Aligned_cols=226  Identities=15%  Similarity=0.158  Sum_probs=129.5

Q ss_pred             CccccCCCCCcccccccHHHHHHH----HHHhhcCCCC-----eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccc
Q 025758            2 LWVDKYRPKTLDQVIVHQDIAQNL----KKLVTEQDCP-----HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (248)
Q Consensus         2 ~~~~ky~p~~~~~lig~~~~~~~l----~~~~~~~~~~-----~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~   72 (248)
                      +|-++|+|.++   .|.+..++.|    ...+..|..+     +++|+||||||||++++.+++.+....... ......
T Consensus         8 ~l~~~~~P~~~---~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~-~~~~~~   83 (287)
T d1w5sa2           8 VFDENYIPPEL---RVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKE-GLTVKQ   83 (287)
T ss_dssp             GGSTTCCCSSC---SSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred             hcCCccCCCCC---CCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccc-cCCcee
Confidence            36789999555   5554444444    3444444322     267789999999999999999874321100 000000


Q ss_pred             eeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC------HHH
Q 025758           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------REA  146 (248)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------~~~  146 (248)
                      ...++..... ...................+................        ...+.++++||+|.+.      .+.
T Consensus        84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~iide~d~l~~~~~~~~~~  154 (287)
T d1w5sa2          84 AYVNAFNAPN-LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYV--------ENHYLLVILDEFQSMLSSPRIAAED  154 (287)
T ss_dssp             EEEEGGGCCS-HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH--------HTCEEEEEEESTHHHHSCTTSCHHH
T ss_pred             eeeccccccc-hhhHHHHHhhhcccccccccchHHHHHHHHHHHHHh--------ccCccccceeEEEEeccccccchhH
Confidence            0000000000 000000000001111112222222222222222222        2356788999997652      345


Q ss_pred             HHHHHHHHHHhc-----CCeeEEEEecCCC------cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHHc--CCCCCHH
Q 025758          147 QHSLRRTMEKYS-----ASCRLILCCNSSS------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSG  212 (248)
Q Consensus       147 ~~~ll~~le~~~-----~~~~~Il~t~~~~------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~~--~~~~~~~  212 (248)
                      ...+..+++.+.     ....+|++++...      ...+.+.+|. ..++|++|+.+++.+++..+++..  ...++++
T Consensus       155 ~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~  234 (287)
T d1w5sa2         155 LYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPR  234 (287)
T ss_dssp             HHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHH
T ss_pred             HHHHHHHHHhcchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHH
Confidence            556666666542     2345777777664      2335666665 789999999999999999998764  3358899


Q ss_pred             HHHHHHHHc------cccHHHHHHHHHHHhhhcc
Q 025758          213 FATRLAEKS------NRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       213 ~~~~l~~~~------~g~~r~~~~~l~~~~~~~~  240 (248)
                      +++.+++.+      .||+|.++++|+.+...+.
T Consensus       235 al~~ia~~~~~~~~~~gd~R~ai~~l~~a~~~A~  268 (287)
T d1w5sa2         235 HLELISDVYGEDKGGDGSARRAIVALKMACEMAE  268 (287)
T ss_dssp             HHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHH
Confidence            999999765      6899999999998875554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.5e-19  Score=143.70  Aligned_cols=188  Identities=22%  Similarity=0.264  Sum_probs=115.2

Q ss_pred             CCcccccccHHHHHHHHHHhh----------c-CC--CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeec
Q 025758           10 KTLDQVIVHQDIAQNLKKLVT----------E-QD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~----------~-~~--~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~   76 (248)
                      .+|+|+.|.+++++.|..++.          . |-  ..++||+||||||||++|+++|+.+..+-   +.++..     
T Consensus         4 ~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~---~~~~~~-----   75 (265)
T d1r7ra3           4 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIKGP-----   75 (265)
T ss_dssp             CSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEE---EEECHH-----
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcE---EEEEHH-----
Confidence            399999998887777776542          1 22  23499999999999999999999763211   111000     


Q ss_pred             cCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH-----------
Q 025758           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------  145 (248)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----------  145 (248)
                                         .+.....+ ......+..+.....         ..|.|++|||+|.+...           
T Consensus        76 -------------------~l~~~~~~-~~~~~l~~~f~~A~~---------~~p~il~ideid~l~~~~~~~~~~~~~~  126 (265)
T d1r7ra3          76 -------------------ELLTMWFG-ESEANVREIFDKARQ---------AAPCVLFFDELDSIAKARGGNIGDGGGA  126 (265)
T ss_dssp             -------------------HHHTSCTT-THHHHHHHHHHHHHH---------TCSEEEEESSGGGTCCHHHHCCCTTHHH
T ss_pred             -------------------Hhhhcccc-chHHHHHHHHHHHHh---------cCCcceeHHhhhhccccCCCcCCCCcHH
Confidence                               00000111 122334454554432         25679999999876421           


Q ss_pred             ---HHHHHHHHHHHh--cCCeeEEEEecCCCcccHHHhh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 025758          146 ---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (248)
Q Consensus       146 ---~~~~ll~~le~~--~~~~~~Il~t~~~~~~~~~l~s--R~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~l  217 (248)
                         ..+.|+..++..  ..+..+|.+||++..+.+++++  |+ ..|.|++|+.++..+++...+.+.... .+..++.+
T Consensus       127 ~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~l~~l  205 (265)
T d1r7ra3         127 ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFL  205 (265)
T ss_dssp             HHHHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-----CCCCHHH
T ss_pred             HHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCch-hhhhHHHH
Confidence               124455555433  2235688889999999999975  67 589999999999999998766543222 22246677


Q ss_pred             HHHccc-cHHHHHHHHHHH
Q 025758          218 AEKSNR-SLRRAILSFETC  235 (248)
Q Consensus       218 ~~~~~g-~~r~~~~~l~~~  235 (248)
                      ++.+.| +.+++.++++.+
T Consensus       206 a~~t~g~s~~di~~lv~~A  224 (265)
T d1r7ra3         206 AKMTNGFSGADLTEICQRA  224 (265)
T ss_dssp             HHHHCSSCCHHHHHHHHHH
T ss_pred             HhcCCCCCHHHHHHHHHHH
Confidence            766654 344444444443

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=1e-17  Score=137.24  Aligned_cols=184  Identities=17%  Similarity=0.316  Sum_probs=119.2

Q ss_pred             cccccHHHHHHHHHHhh-------c-CCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           14 QVIVHQDIAQNLKKLVT-------E-QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~-------~-~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      .++||+++++.+...+.       + .++. .++|+||+|+|||.+|+.+|..++.....-++++...+......     
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~-----   98 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV-----   98 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG-----
T ss_pred             eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhh-----
Confidence            45899999988766553       1 2233 38999999999999999999988766555555555433310000     


Q ss_pred             ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------
Q 025758           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------  158 (248)
                             ...++-.+...|......+   .+.+..         +...|+++||+|.+++..++.|++++++..      
T Consensus        99 -------~~L~g~~~gyvG~~~~~~l---~~~~~~---------~p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~g  159 (315)
T d1qvra3          99 -------SRLIGAPPGYVGYEEGGQL---TEAVRR---------RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHG  159 (315)
T ss_dssp             -------GGC--------------CH---HHHHHH---------CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSS
T ss_pred             -------hhhcCCCCCCcCcccCChH---HHHHHh---------CCCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCC
Confidence                   0001111111111111112   222222         245699999999999999999999998641      


Q ss_pred             -----CCeeEEEEecCC--------------------------CcccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH--
Q 025758          159 -----ASCRLILCCNSS--------------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK--  204 (248)
Q Consensus       159 -----~~~~~Il~t~~~--------------------------~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~--  204 (248)
                           .++.||++||--                          ..+.+.+.+|+ .++.|.+++.+++.+++...+.+  
T Consensus       160 r~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~  239 (315)
T d1qvra3         160 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLR  239 (315)
T ss_dssp             CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred             cEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHH
Confidence                 234577777732                          24778888998 57789999999999998766543  


Q ss_pred             -----cC--CCCCHHHHHHHHHHc
Q 025758          205 -----EG--LQLPSGFATRLAEKS  221 (248)
Q Consensus       205 -----~~--~~~~~~~~~~l~~~~  221 (248)
                           .+  +.++++++++|++.+
T Consensus       240 ~rl~~~~i~l~i~~~~~~~L~~~~  263 (315)
T d1qvra3         240 ARLAEKRISLELTEAAKDFLAERG  263 (315)
T ss_dssp             HHHHTTTCEEEECHHHHHHHHHHH
T ss_pred             HHHHhccccccccHHHHHHHHHhC
Confidence                 23  358899999999874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=3.9e-17  Score=133.82  Aligned_cols=181  Identities=19%  Similarity=0.257  Sum_probs=118.3

Q ss_pred             cccccHHHHHHHHHHhh--------cCCCC-eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccc
Q 025758           14 QVIVHQDIAQNLKKLVT--------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~--------~~~~~-~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (248)
                      .++||+++++.+...+.        ..++. .++|.||+|+|||.+|+.+|..+..   .-++++...+.....      
T Consensus        23 ~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~---~~i~~d~s~~~~~~~------   93 (315)
T d1r6bx3          23 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI---ELLRFDMSEYMERHT------   93 (315)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC---EEEEEEGGGCSSSSC------
T ss_pred             eecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccC---CeeEeccccccchhh------
Confidence            46899999998877663        22333 3999999999999999999997632   233343332220000      


Q ss_pred             ceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc------
Q 025758           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (248)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~------  158 (248)
                            ....++-   ..+........ .+.....        ...+.|+++||+|.++++.++.|++++++..      
T Consensus        94 ------~~~l~g~---~~gy~g~~~~~-~l~~~~~--------~~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~G  155 (315)
T d1r6bx3          94 ------VSRLIGA---PPGYVGFDQGG-LLTDAVI--------KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNG  155 (315)
T ss_dssp             ------CSSSCCC---CSCSHHHHHTT-HHHHHHH--------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTT
T ss_pred             ------hhhhccc---CCCccccccCC-hhhHHHH--------hCccchhhhcccccccchHhhhhHHhhccceecCCCC
Confidence                  0111121   12211111111 1222222        2255799999999999999999999998632      


Q ss_pred             -----CCeeEEEEecCCC-------------------------cccHHHhhhh-heeeecCCCHHHHHHHHHHHHHH---
Q 025758          159 -----ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK---  204 (248)
Q Consensus       159 -----~~~~~Il~t~~~~-------------------------~~~~~l~sR~-~~i~~~~~~~~~~~~il~~~~~~---  204 (248)
                           .++.+|++||-..                         .+.|.+..|+ .++.|.+++.+++.+|+...+.+   
T Consensus       156 r~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~  235 (315)
T d1r6bx3         156 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQV  235 (315)
T ss_dssp             EEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHH
Confidence                 3456888877321                         2667788888 58999999999999988776543   


Q ss_pred             ----c--CCCCCHHHHHHHHHHc
Q 025758          205 ----E--GLQLPSGFATRLAEKS  221 (248)
Q Consensus       205 ----~--~~~~~~~~~~~l~~~~  221 (248)
                          .  .+.++++++++|++.+
T Consensus       236 ~l~~~~i~l~~~~~a~~~l~~~~  258 (315)
T d1r6bx3         236 QLDQKGVSLEVSQEARNWLAEKG  258 (315)
T ss_dssp             HHHHTTEEEEECHHHHHHHHHHH
T ss_pred             HHHhcCcchhhHHHHHHHHHHhC
Confidence                2  3358899999999764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.68  E-value=4.9e-17  Score=133.04  Aligned_cols=154  Identities=16%  Similarity=0.281  Sum_probs=93.4

Q ss_pred             ccccHHHHHHHHHHhh--------------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758           15 VIVHQDIAQNLKKLVT--------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus        15 lig~~~~~~~l~~~~~--------------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      ++||+++++.+...+.              +....++||+||||||||++|+++|+.+..+   .+.+++..+.      
T Consensus        16 ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~---~~~i~~s~~~------   86 (309)
T d1ofha_          16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFT------   86 (309)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGGS------
T ss_pred             ccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccc---hhcccccccc------
Confidence            4899999999976551              1133459999999999999999999976321   2222221111      


Q ss_pred             ccccceeeecccceeeeCCCCcCcch-hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH------------HH
Q 025758           81 NIDLELTTLSSANHVELSPSDAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------------AQ  147 (248)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~------------~~  147 (248)
                                        ........ .......+.    .....+.....+.||+|||+|.+.+.            ..
T Consensus        87 ------------------~~~~~~~~~~~~~~~~f~----~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~  144 (309)
T d1ofha_          87 ------------------EVGYVGKEVDSIIRDLTD----SAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQ  144 (309)
T ss_dssp             ------------------SCCSGGGSTTHHHHHHHH----TTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHH
T ss_pred             ------------------cceeEeeeccccccccch----hhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHH
Confidence                              00000000 001122111    11100000124679999999988532            45


Q ss_pred             HHHHHHHHHhc----------CCeeEEEE----ecCCCcccHHHhhhh-heeeecCCCHHHHHHHHH
Q 025758          148 HSLRRTMEKYS----------ASCRLILC----CNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLE  199 (248)
Q Consensus       148 ~~ll~~le~~~----------~~~~~Il~----t~~~~~~~~~l~sR~-~~i~~~~~~~~~~~~il~  199 (248)
                      +.|++.++...          .+..||++    ++++..+.+.++.|+ ..+.|++|+..++.+++.
T Consensus       145 ~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~  211 (309)
T d1ofha_         145 RDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT  211 (309)
T ss_dssp             HHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred             HHhhHHhcCCEEecCCeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHH
Confidence            66888887421          12234444    355668999999999 679999999999999874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=2.6e-16  Score=125.08  Aligned_cols=206  Identities=16%  Similarity=0.197  Sum_probs=134.3

Q ss_pred             CCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (248)
                      +--.++.++|.++-++.+...+......+++|+||||+|||++++.+|..+........-.+..                
T Consensus        13 ~~~~ld~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~----------------   76 (268)
T d1r6bx2          13 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCT----------------   76 (268)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCE----------------
T ss_pred             HcCCCCcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccce----------------
Confidence            3456778899999999999999877777899999999999999999999774322111000000                


Q ss_pred             eecccceeeeCCCC--cCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCH-----HHHHHHHHHHHHh--c
Q 025758           88 TLSSANHVELSPSD--AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----EAQHSLRRTMEKY--S  158 (248)
Q Consensus        88 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----~~~~~ll~~le~~--~  158 (248)
                            .+.+....  .+.......++.+..+.....     ..+..|++|||++.+-.     .....+..++.-+  .
T Consensus        77 ------i~~l~~~~liag~~~~g~~e~r~~~i~~~~~-----~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r  145 (268)
T d1r6bx2          77 ------IYSLDIGSLLAGTKYRGDFEKRFKALLKQLE-----QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS  145 (268)
T ss_dssp             ------EEECCCC---CCCCCSSCHHHHHHHHHHHHS-----SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS
T ss_pred             ------eEEeeechHhccCccchhHHHHHHHHHHHhh-----ccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhC
Confidence                  11221111  111111123333333222111     22556899999987721     1122333344322  3


Q ss_pred             CCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcc------c
Q 025758          159 ASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSN------R  223 (248)
Q Consensus       159 ~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~------g  223 (248)
                      .+..+|.+|+..+     +-.++|.+||..|.+..|+.++...+|......    .++.++++++..+++.+.      .
T Consensus       146 g~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~  225 (268)
T d1r6bx2         146 GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH  225 (268)
T ss_dssp             CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSC
T ss_pred             CCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCC
Confidence            3457777776442     567889999999999999999999999876543    588999999999987653      3


Q ss_pred             cHHHHHHHHHHHhhhcc
Q 025758          224 SLRRAILSFETCRVQQL  240 (248)
Q Consensus       224 ~~r~~~~~l~~~~~~~~  240 (248)
                      -+..++++|+.++....
T Consensus       226 ~PdKAIdllDea~a~~~  242 (268)
T d1r6bx2         226 LPDKAIDVIDEAGARAR  242 (268)
T ss_dssp             TTHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHH
Confidence            48899999999886443

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.64  E-value=6e-17  Score=126.20  Aligned_cols=145  Identities=12%  Similarity=0.207  Sum_probs=90.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCccccccee--------eecccceeeeCCCCcCcch-
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT--------TLSSANHVELSPSDAGFQD-  106 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-  106 (248)
                      .+.|.||||+||||+++++++ +..+++|.+.++|.++....+..+. +.+.        ..++.+++.+......... 
T Consensus        26 ~~~liGpnGaGKSTll~~i~G-l~~p~~G~I~~~G~~i~~~~~~~r~-ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~  103 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG-IVKPDRGEVRLNGADITPLPPERRG-IGFVPQDYALFPHLSVYRNIAYGLRNVERVER  103 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCTTTSC-CBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHc-CCCCCceEEEECCEECCcCCHHHcC-ceeeccchhhcccchhhHhhhhhhcccCHHHH
Confidence            366899999999999999998 7899999999999877533332211 1110        0111112222111110000 


Q ss_pred             hHHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEE
Q 025758          107 RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILC  166 (248)
Q Consensus       107 ~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~  166 (248)
                      ...+.+.++.+     ...++..+|+            ..+|+++++||| ..+|+..+..+++.+.+..+  +..+|++
T Consensus       104 ~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~v  183 (240)
T d2onka1         104 DRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV  183 (240)
T ss_dssp             HHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            11122222221     1223334442            568999999999 89999999999999988743  4678888


Q ss_pred             ecCCCcccHHHhhhhhe
Q 025758          167 CNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       167 t~~~~~~~~~l~sR~~~  183 (248)
                      ||+.... ..+.+|+.+
T Consensus       184 tHd~~~~-~~~adri~v  199 (240)
T d2onka1         184 THDLIEA-AMLADEVAV  199 (240)
T ss_dssp             ESCHHHH-HHHCSEEEE
T ss_pred             eCCHHHH-HHhCCEEEE
Confidence            8876655 477788744

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=8.9e-18  Score=130.66  Aligned_cols=158  Identities=16%  Similarity=0.263  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------eeeccc
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------TTLSSA   92 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~   92 (248)
                      +++.++..+++|..  +.|.||+||||||+++++++ +..+++|.+.++|+++....+..+ ...+        ...++.
T Consensus        15 ~l~~isl~i~~Gei--~~liGpsGsGKSTLl~~i~G-l~~p~sG~I~i~g~~i~~~~~~~r-~ig~v~Q~~~l~~~~tv~   90 (232)
T d2awna2          15 VSKDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPAER-GVGMVFQSYALYPHLSVA   90 (232)
T ss_dssp             EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEESSSCCTTSCGGGT-CEEEECSSCCC-------
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCChHHHHHHHHhc-CCCCCCCEEEECCEECCCCchhhc-eeeeeccccccccchhHH
Confidence            33334444444443  56999999999999999998 889999999999986642222111 0111        111223


Q ss_pred             ceeeeCCCCcCcchh---HHHHHHHHH-----HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHH
Q 025758           93 NHVELSPSDAGFQDR---YVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll  151 (248)
                      +++.+.....+....   ..+.+.++.     ....++..+|+            ..+|+++++||| ..||+.....++
T Consensus        91 eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~  170 (232)
T d2awna2          91 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR  170 (232)
T ss_dssp             --------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence            333333222222211   123333322     23345556664            348999999999 899999999999


Q ss_pred             HHHHHhc--CCeeEEEEecCCCcccHHHhhhhhe
Q 025758          152 RTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       152 ~~le~~~--~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ..+.+..  .+..+|++||+.. ....+.+|+.+
T Consensus       171 ~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~v  203 (232)
T d2awna2         171 IEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVV  203 (232)
T ss_dssp             HHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred             HHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            9888763  3456777777654 44477888744

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=1.7e-16  Score=123.76  Aligned_cols=165  Identities=13%  Similarity=0.214  Sum_probs=102.9

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce--------e
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL--------T   87 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~   87 (248)
                      +|...+++.+...+++|..  +.|.||||+||||+++++++ +..+++|.+.++|+++....+..+. ..+        .
T Consensus        16 yg~~~al~~vsl~v~~Ge~--~~liGpsGaGKSTLl~~i~G-l~~p~sG~I~i~g~~i~~~~~~~r~-ig~v~Q~~~l~~   91 (239)
T d1v43a3          16 FGNFTAVNKLNLTIKDGEF--LVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPPKDRN-ISMVFQSYAVWP   91 (239)
T ss_dssp             ETTEEEEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGGGT-EEEEEC------
T ss_pred             ECCEEEEcceeEEECCCCE--EEEECCCCChHHHHHHHHHc-CCCCCCCEEEEcceecccCCcccce-EEEEeechhhcc
Confidence            3444444444445555543  56999999999999999998 7899999999999876532322211 111        1


Q ss_pred             eecccceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           88 TLSSANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      ..++.+++.+.....+....   ..+.++++.+     ...++..+|+            ..+|+++++||| ..+|+..
T Consensus        92 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~  171 (239)
T d1v43a3          92 HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL  171 (239)
T ss_dssp             CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred             cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHH
Confidence            11222233333322232222   1223333322     3344556664            558999999999 8999999


Q ss_pred             HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhheee
Q 025758          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      ...+++++.+...  +..+|++||+..... .+.+|+.++.
T Consensus       172 ~~~i~~ll~~l~~~~g~tii~vTHd~~~a~-~~~dri~vm~  211 (239)
T d1v43a3         172 RVAMRAEIKKLQQKLKVTTIYVTHDQVEAM-TMGDRIAVMN  211 (239)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEESCHHHHH-HHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEeCCHHHHH-HhCCEEEEEE
Confidence            9999999988743  467788877765444 7778875433

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.62  E-value=8.5e-18  Score=132.13  Aligned_cols=166  Identities=11%  Similarity=0.086  Sum_probs=99.4

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccc--cce-------
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID--LEL-------   86 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------   86 (248)
                      +|...+++.++..+++|..  +.|.||||+||||+++++++ +..+++|.+.++|.++....+.....  +.+       
T Consensus        16 yg~~~al~~vs~~i~~Gei--~~liGpnGaGKSTl~~~i~G-l~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l   92 (240)
T d1ji0a_          16 YGAIHAIKGIDLKVPRGQI--VTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRI   92 (240)
T ss_dssp             ETTEEEEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCC
T ss_pred             ECCEEEEeeeeEEECCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCccEEEecccccccccHHHHHHhcccccCccccc
Confidence            3444445555555666654  45999999999999999998 78999999999998764221111100  000       


Q ss_pred             -eeecccceeeeCCCCcC--cchhHHHHHHHHH---H---HhcCCCcCCC------------CCCeeEEEEeCC-CCCCH
Q 025758           87 -TTLSSANHVELSPSDAG--FQDRYVVQEVIKE---M---AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (248)
Q Consensus        87 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~---~~~~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (248)
                       ...++.+++.+......  ........+.+..   +   ....+..+|+            ..+|+++|+||| ..+|+
T Consensus        93 ~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~  172 (240)
T d1ji0a_          93 FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAP  172 (240)
T ss_dssp             CTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCH
T ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCH
Confidence             00111111111110110  0011112222221   1   2222335553            569999999999 89999


Q ss_pred             HHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhheee
Q 025758          145 EAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNIR  185 (248)
Q Consensus       145 ~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~i~  185 (248)
                      .....+++++.+..+. ..+|++||+...+. .+.+|+.+++
T Consensus       173 ~~~~~i~~~i~~l~~~g~til~~tH~l~~~~-~~~drv~vl~  213 (240)
T d1ji0a_         173 ILVSEVFEVIQKINQEGTTILLVEQNALGAL-KVAHYGYVLE  213 (240)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEESCHHHHH-HHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEE
Confidence            9999999999987544 56777777766554 7888885443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=7.7e-18  Score=132.12  Aligned_cols=154  Identities=18%  Similarity=0.217  Sum_probs=97.6

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      +|...+++.+...+.+|..-.  |.||||+||||+++++++ +..++.|.+.++|.++......           ....+
T Consensus        12 yg~~~vl~~vs~~v~~Gei~g--lvG~nGaGKSTLl~~l~G-~~~p~~G~i~i~G~~i~~~~~~-----------~~~~i   77 (238)
T d1vpla_          12 IGKKEILKGISFEIEEGEIFG--LIGPNGAGKTTTLRIIST-LIKPSSGIVTVFGKNVVEEPHE-----------VRKLI   77 (238)
T ss_dssp             ETTEEEEEEEEEEECTTCEEE--EECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEETTTCHHH-----------HHTTE
T ss_pred             ECCEEEEccceeEEcCCCEEE--EECCCCCCHHHHHHHHhc-CCCCCCCEEEECcEecccChHH-----------HHhhE
Confidence            444445555555556665444  999999999999999999 7799999999999765311100           01124


Q ss_pred             eeCCCCcCcchhHHHHHHH------------------HHHH---------hcCCCcCCC------------CCCeeEEEE
Q 025758           96 ELSPSDAGFQDRYVVQEVI------------------KEMA---------KNRPIDTKG------------KRGFKVLVL  136 (248)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~------------------~~~~---------~~~~~~~~~------------~~~~~viii  136 (248)
                      ++.+.........++.+.+                  +.+.         ......+|+            ..+|+++++
T Consensus        78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illL  157 (238)
T d1vpla_          78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL  157 (238)
T ss_dssp             EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            4444443333333222222                  1111         112223332            568999999


Q ss_pred             eCC-CCCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhhhee
Q 025758          137 NEV-DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       137 DE~-d~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      ||| ..||+..+..+++++.+..... .+|++||+. .....+++|+.++
T Consensus       158 DEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l-~~~~~~~drv~vl  206 (238)
T d1vpla_         158 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALI  206 (238)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence            999 8999999999999998875554 556665554 4444788887543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.60  E-value=1.9e-17  Score=129.44  Aligned_cols=158  Identities=13%  Similarity=0.214  Sum_probs=100.2

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      +|...+++.++..+++|..  +.|.||+|+||||+++++++ +..+++|.+.++|.++.........      ......+
T Consensus        13 yg~~~al~~vsl~i~~Ge~--~~liG~sGaGKSTll~~i~g-l~~p~sG~I~~~g~~i~~~~~~~~~------~~~~r~i   83 (240)
T d1g2912          13 FGEVTAVREMSLEVKDGEF--MILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKGIFV------PPKDRDI   83 (240)
T ss_dssp             ETTEEEEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEEEGGGTEEC------CGGGSSE
T ss_pred             ECCEEEEcceeeEEcCCCE--EEEECCCCChHHHHHHHHhc-CCCCCCCEEEECCEEecccchhhhc------ccccccc
Confidence            3444444444555555543  55999999999999999998 7899999999999876522211100      0001123


Q ss_pred             eeCCCCcCcchhHHHHHH----------------------HHHH-----HhcCCCcCCC------------CCCeeEEEE
Q 025758           96 ELSPSDAGFQDRYVVQEV----------------------IKEM-----AKNRPIDTKG------------KRGFKVLVL  136 (248)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~----------------------~~~~-----~~~~~~~~~~------------~~~~~viii  136 (248)
                      ++.+.+....+..++.+.                      ++.+     ...++..+|+            ..+|+++|+
T Consensus        84 g~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLll  163 (240)
T d1g2912          84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLM  163 (240)
T ss_dssp             EEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             eecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            443333333322222222                      2222     2233445553            458999999


Q ss_pred             eCC-CCCCHHHHHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          137 NEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       137 DE~-d~l~~~~~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      ||| ..+|+..+..+++++.+...  +..+|++||+.+.+ ..+++|+.+
T Consensus       164 DEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~-~~~~drv~v  212 (240)
T d1g2912         164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA-MTMGDRIAV  212 (240)
T ss_dssp             ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEE
T ss_pred             cCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHH-HHhCCEEEE
Confidence            999 89999999999999988743  56788888875544 377788743

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=9.8e-15  Score=121.98  Aligned_cols=198  Identities=19%  Similarity=0.292  Sum_probs=128.1

Q ss_pred             CCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee
Q 025758           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (248)
Q Consensus        10 ~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (248)
                      -.++.++|.+.-++.+...+...+..+.+|+||||+|||+++.-+|..+........-.+.                   
T Consensus        19 g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~-------------------   79 (387)
T d1qvra2          19 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGK-------------------   79 (387)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTC-------------------
T ss_pred             CCCCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCc-------------------
Confidence            4567789999999999999877666778999999999999999999876432211100000                   


Q ss_pred             cccceeeeCCCCc--Ccch----hHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC--------HHHHHHHHHHHH
Q 025758           90 SSANHVELSPSDA--GFQD----RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------REAQHSLRRTME  155 (248)
Q Consensus        90 ~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------~~~~~~ll~~le  155 (248)
                         ..+.+.....  |...    ...+..++..+..        ..++-|++|||++.+-        .++.+.|...|.
T Consensus        80 ---~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~--------~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~  148 (387)
T d1qvra2          80 ---RIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ--------SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA  148 (387)
T ss_dssp             ---EEEEECC-----------CHHHHHHHHHHHHHT--------TCSSEEEEECCC-------------------HHHHH
T ss_pred             ---eEEEeeHhhhhcccCcchhHHHHHHHHHHHhcc--------CCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHh
Confidence               0122222211  1111    1123333444333        2245689999998772        133455666665


Q ss_pred             HhcCCeeEEEEecCCC----cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcc-----
Q 025758          156 KYSASCRLILCCNSSS----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSN-----  222 (248)
Q Consensus       156 ~~~~~~~~Il~t~~~~----~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~----~~~~~~~~~~~~l~~~~~-----  222 (248)
                      .  ....+|.+|+..+    .-.++|.+||..|.+..|+.++...+|......    .++.++++++..+++.+.     
T Consensus       149 r--g~~~~I~~tT~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~  226 (387)
T d1qvra2         149 R--GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITE  226 (387)
T ss_dssp             T--TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCS
T ss_pred             C--CCcceeeecCHHHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhccccccc
Confidence            3  4567888877442    346789999999999999999999999877654    488899999999987653     


Q ss_pred             -ccHHHHHHHHHHHhhhc
Q 025758          223 -RSLRRAILSFETCRVQQ  239 (248)
Q Consensus       223 -g~~r~~~~~l~~~~~~~  239 (248)
                       .-+..++++|+.++...
T Consensus       227 r~~PdKAidlld~a~a~~  244 (387)
T d1qvra2         227 RRLPDKAIDLIDEAAARL  244 (387)
T ss_dssp             SCTHHHHHHHHHHHHHHH
T ss_pred             ccChhhHHHHHHHHHHHH
Confidence             35899999999988643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.59  E-value=2.1e-14  Score=119.37  Aligned_cols=176  Identities=16%  Similarity=0.218  Sum_probs=105.2

Q ss_pred             ccccHHHHHHHHHHhh------------------------------cCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcc
Q 025758           15 VIVHQDIAQNLKKLVT------------------------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE   64 (248)
Q Consensus        15 lig~~~~~~~l~~~~~------------------------------~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~   64 (248)
                      ++||+++++.+..++.                              +..+.++||.||+|||||.+|+.+|+.+   ...
T Consensus        19 ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~---~~~   95 (364)
T d1um8a_          19 VIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL---DIP   95 (364)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCC
T ss_pred             ecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhc---ccc
Confidence            5899999988865441                              1223449999999999999999999854   112


Q ss_pred             cceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCC---
Q 025758           65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK---  141 (248)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~---  141 (248)
                      -++++...|.                   ..+|...+.    ...+.+.+.    ..+... ....+.++++||++.   
T Consensus        96 ~ir~D~s~~~-------------------e~gyvg~dv----~~~i~~l~~----~~~~~v-~~~~~~iv~lDEieK~~~  147 (364)
T d1um8a_          96 IAISDATSLT-------------------EAGYVGEDV----ENILTRLLQ----ASDWNV-QKAQKGIVFIDEIDKISR  147 (364)
T ss_dssp             EEEEEGGGCC---------------------------C----THHHHHHHH----HTTTCH-HHHTTSEEEEETGGGC--
T ss_pred             eeehhhhhcc-------------------cchhhHhhh----ccchhhhhh----hchhHH-HHhhcccchhhhhhhhcc
Confidence            2222222111                   122222111    112222222    111111 123556999999988   


Q ss_pred             -----------CCHHHHHHHHHHHHHhc-------------CCeeEEEEecCC---------------------------
Q 025758          142 -----------LSREAQHSLRRTMEKYS-------------ASCRLILCCNSS---------------------------  170 (248)
Q Consensus       142 -----------l~~~~~~~ll~~le~~~-------------~~~~~Il~t~~~---------------------------  170 (248)
                                 .++..++.|++.++...             .+..++.++|-.                           
T Consensus       148 ~s~~~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~  227 (364)
T d1um8a_         148 LSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQ  227 (364)
T ss_dssp             ------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCC
T ss_pred             ccccccccccccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccc
Confidence                       56678999999999421             112233222210                           


Q ss_pred             ----------------------CcccHHHhhhh-heeeecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHH
Q 025758          171 ----------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFA  214 (248)
Q Consensus       171 ----------------------~~~~~~l~sR~-~~i~~~~~~~~~~~~il~~-----------~~~~~~~--~~~~~~~  214 (248)
                                            ..+.|.+..|+ .++.|.+++.+++.+|+..           .+..+|+  .++++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~  307 (364)
T d1um8a_         228 EKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAI  307 (364)
T ss_dssp             SSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHH
T ss_pred             cccchhhhhhhhccccHHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHH
Confidence                                  12567788888 6799999999999999963           2333455  4789999


Q ss_pred             HHHHHHc
Q 025758          215 TRLAEKS  221 (248)
Q Consensus       215 ~~l~~~~  221 (248)
                      ++|++.+
T Consensus       308 ~~la~~g  314 (364)
T d1um8a_         308 KEIAQLA  314 (364)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9999764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.59  E-value=6.8e-15  Score=121.44  Aligned_cols=178  Identities=17%  Similarity=0.198  Sum_probs=93.1

Q ss_pred             CCC-CcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceeccccee----eccCCccc
Q 025758            8 RPK-TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK----IDAGSRNI   82 (248)
Q Consensus         8 ~p~-~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~----~~~~~~~~   82 (248)
                      ||. .|.+++||+.+++.|.-.+-.....|+||.||||+|||++|+.+++ +..+- ..+  .+..+.    ..++....
T Consensus         1 ~~~~~f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~-iLp~~-~~~--~~~~~~~~~~~~~~~~~~   76 (333)
T d1g8pa_           1 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAA-LLPEI-EAV--EGCPVSSPNVEMIPDWAT   76 (333)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHH-HSCCE-EEE--TTCTTCCSSGGGSCTTCC
T ss_pred             CCCCChhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHH-hCCCc-hhh--ccCccccCccccccchhh
Confidence            344 6999999999999776554332234699999999999999999998 43321 111  010000    00011000


Q ss_pred             ccceeeeccc-ceeeeCCCCc--CcchhHHHHHHHHHHHh-cCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 025758           83 DLELTTLSSA-NHVELSPSDA--GFQDRYVVQEVIKEMAK-NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~  158 (248)
                      .........+ ..........  +.....+....+..-.. ..+..+ ...+..|++|||++.+++..+++|++.||+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l-~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~  155 (333)
T d1g8pa_          77 VLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLL-ARANRGYLYIDECNLLEDHIVDLLLDVAQSGE  155 (333)
T ss_dssp             CSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHH-HHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred             ccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeecccc-ccccccEeecccHHHHHHHHHHHHhhhhcCCe
Confidence            0000000001 1111111100  00000111111111110 001000 12245799999999999999999999999753


Q ss_pred             CC-----------ee-EEEEecCCC--cccHHHhhhh-heeeecCCC
Q 025758          159 AS-----------CR-LILCCNSSS--KVTEAIRSRC-LNIRINSPT  190 (248)
Q Consensus       159 ~~-----------~~-~Il~t~~~~--~~~~~l~sR~-~~i~~~~~~  190 (248)
                      -.           .. +++.+.++.  .+.+++.+|+ ..+.+..+.
T Consensus       156 v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~  202 (333)
T d1g8pa_         156 NVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPR  202 (333)
T ss_dssp             EEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCC
T ss_pred             EEecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcc
Confidence            11           11 333344442  6999999999 456776664

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.58  E-value=1.7e-14  Score=113.79  Aligned_cols=155  Identities=17%  Similarity=0.292  Sum_probs=92.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCC--cCcch---hHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD--AGFQD---RYVV  110 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~  110 (248)
                      ++||+||||||||++|+++|+++..+-                                +.+...+  .+...   ...+
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~~~~~--------------------------------~~i~~~~~~~g~~~~~~~~~i   89 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEESNFPF--------------------------------IKICSPDKMIGFSETAKCQAM   89 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCSE--------------------------------EEEECGGGCTTCCHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhcccccc--------------------------------cccccccccccccccchhhhh
Confidence            399999999999999999999763211                                1111111  11111   1223


Q ss_pred             HHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCC----------HHHHHHHHHHHHHhcC---CeeEEEEecCCCcccHH-
Q 025758          111 QEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----------REAQHSLRRTMEKYSA---SCRLILCCNSSSKVTEA-  176 (248)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----------~~~~~~ll~~le~~~~---~~~~Il~t~~~~~~~~~-  176 (248)
                      +..+....         ...|.|++|||+|.+.          ....+.++..++....   .+.+|.+||++..+.+. 
T Consensus        90 ~~if~~A~---------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~  160 (246)
T d1d2na_          90 KKIFDDAY---------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME  160 (246)
T ss_dssp             HHHHHHHH---------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred             hhhhhhhh---------hcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchh
Confidence            33343333         3367899999997642          2334566666665432   24567788887666554 


Q ss_pred             Hhhhh-heeeecCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccc-----cHHHHHHHHHHHh
Q 025758          177 IRSRC-LNIRINSPT-EEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR-----SLRRAILSFETCR  236 (248)
Q Consensus       177 l~sR~-~~i~~~~~~-~~~~~~il~~~~~~~~~~~~~~~~~~l~~~~~g-----~~r~~~~~l~~~~  236 (248)
                      +++|+ ..|.+|.+. .+++..++.    .. ..+++.....+++.+.|     .++.++..++.+.
T Consensus       161 ~~~rF~~~i~~P~~~~r~~il~~l~----~~-~~~~~~~~~~i~~~~~g~~~~~~ik~ll~~ie~a~  222 (246)
T d1d2na_         161 MLNAFSTTIHVPNIATGEQLLEALE----LL-GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL  222 (246)
T ss_dssp             CTTTSSEEEECCCEEEHHHHHHHHH----HH-TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred             hcCccceEEecCCchhHHHHHHHHH----hc-cCCChHHHHHHHHHcCCCccchhHHHHHHHHHHHH
Confidence            66777 467775554 344444443    22 24557777778777655     3788887776554

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.58  E-value=5e-16  Score=120.34  Aligned_cols=133  Identities=14%  Similarity=0.243  Sum_probs=91.5

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (248)
                      +.|.||+|+||||+++++++ +..+++|.+.++|.++....+..            ..+++.+.+....+..++.+.+..
T Consensus        29 ~~liGpsGaGKSTll~~l~G-l~~p~sG~I~~~G~~i~~~~~~~------------r~ig~v~Q~~~l~~~~tV~enl~~   95 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDVTDLSPEK------------HDIAFVYQNYSLFPHMNVKKNLEF   95 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHT-SSCCSEEEEEETTEECTTSCHHH------------HTCEEECTTCCCCTTSCHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhc-CcCCCCCEEEEccEeccccchhH------------hcceeeccccccCccccHHHHHHH
Confidence            66999999999999999998 88999999999998764222111            124444444444444444443322


Q ss_pred             HH------------------------hcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          117 MA------------------------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       117 ~~------------------------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      ..                        +..+..+|+            ..+|+++++||| ..||+.....+.+++.+..+
T Consensus        96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~  175 (229)
T d3d31a2          96 GMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK  175 (229)
T ss_dssp             HHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHh
Confidence            11                        112223332            568999999999 89999999999999988643


Q ss_pred             --CeeEEEEecCCCcccHHHhhhhhe
Q 025758          160 --SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       160 --~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                        +..+|++||+..... .+.+|+.+
T Consensus       176 ~~g~tii~vtHd~~~~~-~~~drv~v  200 (229)
T d3d31a2         176 KNKLTVLHITHDQTEAR-IMADRIAV  200 (229)
T ss_dssp             HTTCEEEEEESCHHHHH-HHCSEEEE
T ss_pred             cCCcEEEEEcCCHHHHH-HhCCEEEE
Confidence              457888888765544 67788743

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.58  E-value=3.3e-16  Score=122.22  Aligned_cols=156  Identities=16%  Similarity=0.283  Sum_probs=96.7

Q ss_pred             HHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc----ccccce--------eeecc
Q 025758           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR----NIDLEL--------TTLSS   91 (248)
Q Consensus        24 ~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------~~~~~   91 (248)
                      .+...++.|.  .+.|.||+|+||||+++++++ +..+++|.+.++|+++.......    .+...+        +..++
T Consensus        23 ~vsl~i~~Ge--~~~iiG~sGsGKSTll~~i~g-l~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv   99 (242)
T d1oxxk2          23 NVNINIENGE--RFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA   99 (242)
T ss_dssp             EEEEEECTTC--EEEEECSCHHHHHHHHHHHHT-SSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred             ceEEEECCCC--EEEEECCCCCcHHHHHHHHHc-CcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccH
Confidence            3333344443  367999999999999999998 88999999999998776322111    110111        01122


Q ss_pred             cceeeeCCCCcCcchh---HHHHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHH
Q 025758           92 ANHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSL  150 (248)
Q Consensus        92 ~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~l  150 (248)
                      .+++.+.....+....   ..+.+.++.+     ...++..+|+            ..+|+++++||| ..+|+.....+
T Consensus       100 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i  179 (242)
T d1oxxk2         100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA  179 (242)
T ss_dssp             HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred             HHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHH
Confidence            2233332222222221   1233333322     2334445553            568999999999 89999999999


Q ss_pred             HHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhe
Q 025758          151 RRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       151 l~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .+++.+...  +..+|++||+...+. .+++|+.+
T Consensus       180 ~~~i~~l~~~~g~tvi~vTHd~~~~~-~~~dri~v  213 (242)
T d1oxxk2         180 RALVKEVQSRLGVTLLVVSHDPADIF-AIADRVGV  213 (242)
T ss_dssp             HHHHHHHHHHHCCEEEEEESCHHHHH-HHCSEEEE
T ss_pred             HHHHHHHHhccCCEEEEEECCHHHHH-HhCCEEEE
Confidence            999988743  466788877755444 77788743

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.54  E-value=1.1e-16  Score=126.89  Aligned_cols=155  Identities=15%  Similarity=0.148  Sum_probs=97.4

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeeccccee
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (248)
                      +|...+++.++..+..|..-  .|.||||+||||+++++++ +..+++|.+.++|.++....+....         ...+
T Consensus        14 yg~~~aL~~vs~~v~~Gei~--~liG~nGaGKSTLl~~i~G-l~~p~~G~I~~~g~~i~~~~~~~~~---------~~gi   81 (254)
T d1g6ha_          14 FGEFKALDGVSISVNKGDVT--LIIGPNGSGKSTLINVITG-FLKADEGRVYFENKDITNKEPAELY---------HYGI   81 (254)
T ss_dssp             ETTEEEEEEECCEEETTCEE--EEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHH---------HHTE
T ss_pred             ECCeEEEcceEEEECCCCEE--EEECCCCCcHHHHHHHHHC-CCcCCCcEEEECCEeccchhHHHHH---------HhcC
Confidence            44444555555556666544  4999999999999999998 7899999999999876422221110         0012


Q ss_pred             eeCCCCcCcchhH-----------------------------------HHHHHHHHHH-----hcCCCcCCC--------
Q 025758           96 ELSPSDAGFQDRY-----------------------------------VVQEVIKEMA-----KNRPIDTKG--------  127 (248)
Q Consensus        96 ~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~-----~~~~~~~~~--------  127 (248)
                      .+.+.+....+..                                   .+.+.++.+.     ......+|+        
T Consensus        82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~i  161 (254)
T d1g6ha_          82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI  161 (254)
T ss_dssp             EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred             CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHH
Confidence            2222221111111                                   1122222111     112224442        


Q ss_pred             ----CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758          128 ----KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       128 ----~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                          ..+|+++|+||| ..+|+.....+++++.+.... ..+|++||+.+.+. .+++|+.+
T Consensus       162 AraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~-~~~Drv~v  222 (254)
T d1g6ha_         162 GRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL-NYIDHLYV  222 (254)
T ss_dssp             HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTG-GGCSEEEE
T ss_pred             HHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH-HhCCEEEE
Confidence                458999999999 899999999999999887444 56777777776665 78888854

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.53  E-value=7.5e-15  Score=113.90  Aligned_cols=152  Identities=16%  Similarity=0.246  Sum_probs=91.5

Q ss_pred             HhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-----cccce--------eeecccce
Q 025758           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-----IDLEL--------TTLSSANH   94 (248)
Q Consensus        28 ~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~   94 (248)
                      .+..|.  .+.|.||+||||||+++++++ +..+++|.+.++|.++....+...     ..+.+        ...++.++
T Consensus        27 ~i~~Ge--~~~iiG~sGsGKSTLl~~i~g-l~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en  103 (230)
T d1l2ta_          27 NIKEGE--FVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALEN  103 (230)
T ss_dssp             EECTTC--EEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHH
T ss_pred             EEcCCC--EEEEECCCCCCcchhhHhccC-CCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHH
Confidence            344443  366999999999999999998 889999999999976542111100     00000        00011111


Q ss_pred             eeeC--C-CCcCcchhH---HHHHHHHH------HHhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHH
Q 025758           95 VELS--P-SDAGFQDRY---VVQEVIKE------MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (248)
Q Consensus        95 ~~~~--~-~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (248)
                      +.+.  . .........   .+.+.++.      +...+|..+|+            ..+|+++++||| ..||+..+..
T Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~  183 (230)
T d1l2ta_         104 VELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEK  183 (230)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred             HhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHH
Confidence            1110  0 001111111   12222222      12224455663            568999999999 8999999999


Q ss_pred             HHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhhee
Q 025758          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       150 ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +++++.+...  ++.+|++||+.+ +. .+++|+.++
T Consensus       184 i~~~l~~l~~~~g~tii~vTHd~~-~a-~~~drv~~m  218 (230)
T d1l2ta_         184 IMQLLKKLNEEDGKTVVVVTHDIN-VA-RFGERIIYL  218 (230)
T ss_dssp             HHHHHHHHHHTTCCEEEEECSCHH-HH-TTSSEEEEE
T ss_pred             HHHHHHHHHHhhCCEEEEECCCHH-HH-HhCCEEEEE
Confidence            9999998743  467888888764 44 477776544

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.52  E-value=3.7e-16  Score=123.80  Aligned_cols=164  Identities=12%  Similarity=0.143  Sum_probs=99.4

Q ss_pred             cccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce---eeeccc
Q 025758           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL---TTLSSA   92 (248)
Q Consensus        16 ig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~   92 (248)
                      +|...+++.++..+..|..  +.|.||+|+||||+++++++ +..+++|.+.++|.++....+........   ......
T Consensus        12 yg~~~al~~vs~~i~~GEi--~~iiG~sGsGKSTLl~~i~G-l~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r   88 (258)
T d1b0ua_          12 YGGHEVLKGVSLQARAGDV--ISIIGSSGSGKSTFLRCINF-LEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLR   88 (258)
T ss_dssp             ETTEEEEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHH
T ss_pred             ECCEEEEcceeeEEcCCCE--EEEECCCCCcHHHHHHHHHc-CccCCCCCEEECCEEeccCCccchhcccccHhHHHHHh
Confidence            3444444555555555554  55999999999999999998 78899999999998765332221100000   000001


Q ss_pred             ceeeeCCCCcCcchhH-----------------------HHHHHHHH------HHhcCCCcCCC------------CCCe
Q 025758           93 NHVELSPSDAGFQDRY-----------------------VVQEVIKE------MAKNRPIDTKG------------KRGF  131 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~-----------------------~~~~~~~~------~~~~~~~~~~~------------~~~~  131 (248)
                      ..+++.+.+....+..                       .+.+.++.      ....++..+|+            ..+|
T Consensus        89 ~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P  168 (258)
T d1b0ua_          89 TRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP  168 (258)
T ss_dssp             HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             cceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCC
Confidence            1122222222211111                       12222222      12234556663            4589


Q ss_pred             eEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-eeEEEEecCCCcccHHHhhhhhe
Q 025758          132 KVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       132 ~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      +++|+||| ..+|+..+..+++++.+.... ..+|++||+...+ ..+.+|+.+
T Consensus       169 ~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~-~~~adri~v  221 (258)
T d1b0ua_         169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA-RHVSSHVIF  221 (258)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH-HHHCSEEEE
T ss_pred             CEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHH-HHhCCEEEE
Confidence            99999999 899999999999999887544 4677777665544 588899844

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.52  E-value=1.1e-12  Score=103.22  Aligned_cols=193  Identities=17%  Similarity=0.150  Sum_probs=120.4

Q ss_pred             cccccHHHHHHHHHHhhc-CC-CCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecc
Q 025758           14 QVIVHQDIAQNLKKLVTE-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~~-~~-~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (248)
                      ++||+..+.+.+...+.. .. ..++++.|++||||+++|+++...-.......+.+++...                  
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~------------------   62 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASI------------------   62 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTS------------------
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhh------------------
Confidence            468877777766665543 22 2348999999999999999998733222222222221100                  


Q ss_pred             cceeeeCCCCcCcchhHHHHHHHHHHHhcCCC---------cCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhc----
Q 025758           92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI---------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----  158 (248)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~----  158 (248)
                                   .........+   ......         ++....+...++|||+|.|+...+..|+..+++..    
T Consensus        63 -------------~~~~~~~~lf---g~~~~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~  126 (247)
T d1ny5a2          63 -------------PRDIFEAELF---GYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRL  126 (247)
T ss_dssp             -------------CHHHHHHHHH---CBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCB
T ss_pred             -------------hhcccHHHhc---CcccCCcCCcccccCCHHHccCCCEEEEeChHhCCHHHHHHHHHHHHhCCEEEC
Confidence                         0000000000   000000         00001234579999999999999999999998532    


Q ss_pred             -------CCeeEEEEecCCC-------cccHHHhhhh--heeeecCCC--HHHHHHHHHHHHHH----cCC---CCCHHH
Q 025758          159 -------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPT--EEQIVKVLEFIAKK----EGL---QLPSGF  213 (248)
Q Consensus       159 -------~~~~~Il~t~~~~-------~~~~~l~sR~--~~i~~~~~~--~~~~~~il~~~~~~----~~~---~~~~~~  213 (248)
                             .++++|++|+.+.       .+.+.|..|+  ..|.+|++.  .+++..++...+.+    .+.   .+++++
T Consensus       127 ~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~a  206 (247)
T d1ny5a2         127 GGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSA  206 (247)
T ss_dssp             TCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHH
T ss_pred             CCCCceecCeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHH
Confidence                   1346888887653       3566777776  467777774  35666555555443    232   378999


Q ss_pred             HHHHHHHc-cccHHHHHHHHHHHhhhcc
Q 025758          214 ATRLAEKS-NRSLRRAILSFETCRVQQL  240 (248)
Q Consensus       214 ~~~l~~~~-~g~~r~~~~~l~~~~~~~~  240 (248)
                      +..|.... .||+|++.+.++.+...+.
T Consensus       207 l~~L~~~~WPGNl~EL~~~l~~a~~~~~  234 (247)
T d1ny5a2         207 QELLLSYPWYGNVRELKNVIERAVLFSE  234 (247)
T ss_dssp             HHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence            99998775 8999999999999887654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=6.4e-15  Score=114.90  Aligned_cols=145  Identities=17%  Similarity=0.193  Sum_probs=92.1

Q ss_pred             HHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcch
Q 025758           27 KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD  106 (248)
Q Consensus        27 ~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (248)
                      ..+..|.  .+.|.||+||||||+++++++ +..+++|.+.++|.++....+....       .....+++.+.+....+
T Consensus        26 l~i~~Ge--~~~iiG~sGsGKSTLl~~i~G-l~~p~sG~I~~~g~~i~~~~~~~~~-------~~rr~ig~VfQ~~~l~~   95 (240)
T d3dhwc1          26 LHVPAGQ--IYGVIGASGAGKSTLIRCVNL-LERPTEGSVLVDGQELTTLSESELT-------KARRQIGMIFQHFNLLS   95 (240)
T ss_dssp             EEECSSC--EEEEEESTTSSHHHHHHHHTT-SSCCSEEEEEETTEEECTTCHHHHH-------HHHHHEEECCSSCCCCT
T ss_pred             EEEcCCC--EEEEECCCCCCHHHHHHHHcC-CccccCCceEEcCeEeeeCChhhhh-------hhhccccccccccccCC
Confidence            3344443  356999999999999999998 8899999999999876421111000       00011333333322222


Q ss_pred             hHH----------------------HHHHHHHH-----HhcCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758          107 RYV----------------------VQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus       107 ~~~----------------------~~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      ..+                      +.+.++.+     ...++..+|+            ..+|+++|+||| ..+|+..
T Consensus        96 ~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~  175 (240)
T d3dhwc1          96 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT  175 (240)
T ss_dssp             TSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHH
T ss_pred             CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHH
Confidence            222                      23333322     2223445553            458999999999 8999999


Q ss_pred             HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      +..+++++.+...  +..+|++||+...+ ..+++|+.
T Consensus       176 ~~~i~~~l~~l~~~~g~tvi~vTHdl~~~-~~~~dri~  212 (240)
T d3dhwc1         176 TRSILELLKDINRRLGLTILLITHEMDVV-KRICDCVA  212 (240)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEBSCHHHH-HHHCSEEE
T ss_pred             hhHHHHHHHHHHhccCCEEEEEcCCHHHH-HHhCCEEE
Confidence            9999999988744  45677777775444 47888874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.6e-14  Score=108.70  Aligned_cols=161  Identities=17%  Similarity=0.310  Sum_probs=105.9

Q ss_pred             cCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccc
Q 025758            6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (248)
Q Consensus         6 ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (248)
                      +-+...++.++|.+..++.+...+...+..+++|+||||+|||++++.+|..+........ ..+               
T Consensus        15 ~a~~g~ld~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~-L~~---------------   78 (195)
T d1jbka_          15 RAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG-LKG---------------   78 (195)
T ss_dssp             HHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGG-GTT---------------
T ss_pred             HHHcCCCCCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHH-HcC---------------
Confidence            3345667889999999999999998777778999999999999999999997743221100 000               


Q ss_pred             eeeecccceeeeCCCC--cCcchhH----HHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHH--------HHHHHH
Q 025758           86 LTTLSSANHVELSPSD--AGFQDRY----VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------AQHSLR  151 (248)
Q Consensus        86 ~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--------~~~~ll  151 (248)
                            ...+.+....  .+.....    .+...++.+...        .+.-|++|||++.+-..        +.+.|.
T Consensus        79 ------~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~--------~~~iILfIDeih~l~~~g~~~g~~d~~~~Lk  144 (195)
T d1jbka_          79 ------RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ--------EGNVILFIDELHTMVGAGKADGAMDAGNMLK  144 (195)
T ss_dssp             ------CEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHS--------TTTEEEEEETGGGGTT------CCCCHHHHH
T ss_pred             ------ceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcC--------CCcEEEEcchHHHHhcCCCCCCcccHHHHHH
Confidence                  0112222211  1222222    233344444332        23469999999766321        235666


Q ss_pred             HHHHHhcCCeeEEEEecCCC-----cccHHHhhhhheeeecCCCHHHHHHHH
Q 025758          152 RTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVL  198 (248)
Q Consensus       152 ~~le~~~~~~~~Il~t~~~~-----~~~~~l~sR~~~i~~~~~~~~~~~~il  198 (248)
                      ..+..  ....+|.+|+..+     +-.++|.+|+..|.+..|+.++...+|
T Consensus       145 p~L~r--g~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL  194 (195)
T d1jbka_         145 PALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             HHHhC--CCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCCHHHHHHHh
Confidence            67663  4567887776543     568899999999999999999887765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.3e-14  Score=113.56  Aligned_cols=141  Identities=20%  Similarity=0.259  Sum_probs=85.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-cccce-------eeecccceeeeCCCCcCcchh
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLEL-------TTLSSANHVELSPSDAGFQDR  107 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~  107 (248)
                      .+.+.||+|+||||+++++++ +..+..|.+.++|.++........ ....+       -..+..+++.+......   .
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~---~  106 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMS---V  106 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCC---H
T ss_pred             EEEEECCCCCCHHHHHHHHHh-cCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccccCcccc---H
Confidence            367999999999999999998 788999999999976541111100 00000       00011112222211111   1


Q ss_pred             HHHHHHHHH-----HHhc-----------CCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758          108 YVVQEVIKE-----MAKN-----------RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus       108 ~~~~~~~~~-----~~~~-----------~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~  158 (248)
                      .......+.     ....           .+..+|+            ..+|+|+|+||| ..||+.....+++.+.+..
T Consensus       107 ~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~  186 (241)
T d2pmka1         107 EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC  186 (241)
T ss_dssp             HHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh
Confidence            111111111     1111           1123332            458999999999 7999999999999999887


Q ss_pred             CCeeEEEEecCCCcccHHHhhhhh
Q 025758          159 ASCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       159 ~~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      ++.++|++||+...+ . ..+|+.
T Consensus       187 ~~~Tvi~itH~l~~~-~-~~D~i~  208 (241)
T d2pmka1         187 KGRTVIIIAHRLSTV-K-NADRII  208 (241)
T ss_dssp             TTSEEEEECSSGGGG-T-TSSEEE
T ss_pred             CCCEEEEEECCHHHH-H-hCCEEE
Confidence            777899999988644 2 367764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.48  E-value=2.5e-14  Score=109.26  Aligned_cols=138  Identities=13%  Similarity=0.204  Sum_probs=75.3

Q ss_pred             HHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceee------ecccceeeeCCC
Q 025758           27 KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSANHVELSPS  100 (248)
Q Consensus        27 ~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  100 (248)
                      ..+++|..  +.|.||||+||||+++++++ +..|..|.+.++|.++.....  ...+-.+.      ....+++.....
T Consensus        22 ~~i~~Gei--~~l~G~NGsGKSTLl~~i~g-l~~p~~G~I~~~g~~i~~~~~--~i~~~~~~~~~~~~~t~~~~l~~~~~   96 (200)
T d1sgwa_          22 MTIEKGNV--VNFHGPNGIGKTTLLKTIST-YLKPLKGEIIYNGVPITKVKG--KIFFLPEEIIVPRKISVEDYLKAVAS   96 (200)
T ss_dssp             EEEETTCC--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGGGGGG--GEEEECSSCCCCTTSBHHHHHHHHHH
T ss_pred             EEEcCCCE--EEEECCCCChHHHHHHHHhc-ccccCCCEEEECCEehhHhcC--cEEEEeecccCCCCcCHHHHHHHHHH
Confidence            33445543  55999999999999999998 789999999999976542110  00000000      000000000000


Q ss_pred             CcCc-chhHHHHHHHHHHHh----cCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCC-e
Q 025758          101 DAGF-QDRYVVQEVIKEMAK----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-C  161 (248)
Q Consensus       101 ~~~~-~~~~~~~~~~~~~~~----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~-~  161 (248)
                      ..+. .....+.+.++.+.-    .....+|+            ..+++++|+||| ..||+..+..+++.+.+..+. +
T Consensus        97 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~  176 (200)
T d1sgwa_          97 LYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG  176 (200)
T ss_dssp             HTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS
T ss_pred             hcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCC
Confidence            0000 001112222222110    01112331            558999999999 899999988888888776433 4


Q ss_pred             eEEEEecC
Q 025758          162 RLILCCNS  169 (248)
Q Consensus       162 ~~Il~t~~  169 (248)
                      .+|+++++
T Consensus       177 ~~ii~~~~  184 (200)
T d1sgwa_         177 IVIISSRE  184 (200)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEEec
Confidence            45555554

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.45  E-value=7.8e-14  Score=110.04  Aligned_cols=142  Identities=14%  Similarity=0.240  Sum_probs=85.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeee---------cccceeeeCCCCcCcch
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL---------SSANHVELSPSDAGFQD  106 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  106 (248)
                      .+.++||+||||||+++++++ +..+..|.+.++|.++........+ .....+         +...++.+....  ...
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~~r-~~i~~v~Q~~~l~~~ti~~n~~~~~~~--~~~  118 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR-FYDIDEGHILMDGHDLREYTLASLR-NQVALVSQNVHLFNDTVANNIAYARTE--EYS  118 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT-TTCCSEEEEEETTEETTTBCHHHHH-HTEEEECSSCCCCSSBHHHHHHTTTTS--CCC
T ss_pred             EEEEECCCCChHHHHHHHHhc-ccCCCccEEEECCcccchhhhhhhh-heEEEEeeccccCCcchhhhhhhcCcc--cCC
Confidence            377999999999999999998 7889999999999765411111000 000000         000111111100  011


Q ss_pred             hHHHHHHH------HHHHh----------cCCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHh
Q 025758          107 RYVVQEVI------KEMAK----------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY  157 (248)
Q Consensus       107 ~~~~~~~~------~~~~~----------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~  157 (248)
                      ...+.+.+      +.+..          ..+..+|+            ..+|+|+++||| ..||+.....+++.|.+.
T Consensus       119 ~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l  198 (253)
T d3b60a1         119 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL  198 (253)
T ss_dssp             HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHh
Confidence            11122111      11111          11223442            237899999999 899999999999999988


Q ss_pred             cCCeeEEEEecCCCcccHHHhhhhhe
Q 025758          158 SASCRLILCCNSSSKVTEAIRSRCLN  183 (248)
Q Consensus       158 ~~~~~~Il~t~~~~~~~~~l~sR~~~  183 (248)
                      .++.++|++||+...+  ...+|+.+
T Consensus       199 ~~~~Tvi~itH~l~~~--~~~D~v~v  222 (253)
T d3b60a1         199 QKNRTSLVIAHRLSTI--EQADEIVV  222 (253)
T ss_dssp             HTTSEEEEECSCGGGT--TTCSEEEE
T ss_pred             ccCCEEEEEECCHHHH--HhCCEEEE
Confidence            7778899999887643  24677643

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.44  E-value=2.4e-14  Score=112.29  Aligned_cols=143  Identities=17%  Similarity=0.265  Sum_probs=85.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceeeec-------ccceeeeCCCCcCcchhH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLS-------SANHVELSPSDAGFQDRY  108 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  108 (248)
                      +.+.||+|+||||+++++++ +..|..|.+.++|.++....... +..+.+..-.       ..+++.+...  ......
T Consensus        31 vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~--~~~~~~  107 (242)
T d1mv5a_          31 IAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLE--GDYTDE  107 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTT--SCSCHH
T ss_pred             EEEECCCCCCHHHHHHHHHH-hhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheecccc--cccchh
Confidence            67999999999999999998 78999999999998765222211 1101111101       1111111111  001111


Q ss_pred             HHHHHHHHHHh-----cC-----------CCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcC
Q 025758          109 VVQEVIKEMAK-----NR-----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (248)
Q Consensus       109 ~~~~~~~~~~~-----~~-----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~  159 (248)
                      ...+.++....     ..           +..+|+            ..+|+|+|+||| ..||+.....+++.+++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~  187 (242)
T d1mv5a_         108 DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK  187 (242)
T ss_dssp             HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC
Confidence            22222222111     00           112332            238899999999 89999888889999988877


Q ss_pred             CeeEEEEecCCCcccHHHhhhhhee
Q 025758          160 SCRLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       160 ~~~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +.++|++||+...+ . ..+|+.++
T Consensus       188 ~~Tvi~itH~l~~~-~-~~D~i~vl  210 (242)
T d1mv5a_         188 GRTTLVIAHRLSTI-V-DADKIYFI  210 (242)
T ss_dssp             TSEEEEECCSHHHH-H-HCSEEEEE
T ss_pred             CCEEEEEECCHHHH-H-hCCEEEEE
Confidence            77889998887543 2 36776543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.39  E-value=2.6e-13  Score=106.94  Aligned_cols=141  Identities=18%  Similarity=0.258  Sum_probs=85.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcc-cccc-------eeeecccceeeeCCCCcCcchh
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLE-------LTTLSSANHVELSPSDAGFQDR  107 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~  107 (248)
                      .+.+.||+|+||||+++++++ +..+..|.+.++|.++........ ....       +...++.+++.+.....   ..
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~---~~  121 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR-FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA---TD  121 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT-SSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSC---CH
T ss_pred             EEEEECCCCCcHHHHHHHHHh-cCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcCC---CH
Confidence            367999999999999999998 889999999999976541111000 0000       00011111122211111   11


Q ss_pred             HHHHHHHHH-----HHhcCC-----------CcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 025758          108 YVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (248)
Q Consensus       108 ~~~~~~~~~-----~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~le~~~  158 (248)
                      ..+.+.++.     +....+           ..+|+            ..+++++|+||+ ..||+.....+++.+.+..
T Consensus       122 ~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~  201 (255)
T d2hyda1         122 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS  201 (255)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh
Confidence            112222211     111111           12331            237899999999 8999999999999999887


Q ss_pred             CCeeEEEEecCCCcccHHHhhhhh
Q 025758          159 ASCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       159 ~~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      .+.++|++||+...+  ...+|+.
T Consensus       202 ~~~TvI~itH~~~~~--~~~D~ii  223 (255)
T d2hyda1         202 KDRTTLIVAHRLSTI--THADKIV  223 (255)
T ss_dssp             TTSEEEEECSSGGGT--TTCSEEE
T ss_pred             cCCEEEEEeCCHHHH--HhCCEEE
Confidence            777889999887644  2467764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.8e-13  Score=107.83  Aligned_cols=152  Identities=15%  Similarity=0.173  Sum_probs=87.3

Q ss_pred             HHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc-ccccceee-------eccccee
Q 025758           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTT-------LSSANHV   95 (248)
Q Consensus        24 ~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~   95 (248)
                      .+...+++|.  .+.+.||+||||||+++++++ +..+.+|.+.++|.++....... +....+..       .+..+++
T Consensus        32 ~isl~i~~Ge--~vaivG~sGsGKSTLl~li~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni  108 (251)
T d1jj7a_          32 GLTFTLRPGE--VTALVGPNGSGKSTVAALLQN-LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENI  108 (251)
T ss_dssp             EEEEEECTTC--EEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHH
T ss_pred             ceEEEEcCCC--EEEEECCCCCcHHHHHHHHhc-ccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhh
Confidence            3333444443  366999999999999999998 78999999999997654111110 00000000       0111112


Q ss_pred             eeCCCCcCcchhHHHHHHH------HHHHh----------cCCCcCCC------------CCCeeEEEEeCC-CCCCHHH
Q 025758           96 ELSPSDAGFQDRYVVQEVI------KEMAK----------NRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (248)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~------~~~~~----------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (248)
                      .+.......  .....+..      ..+..          ..+..+|+            ..+|+|+|+||| ..||+..
T Consensus       109 ~~g~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~  186 (251)
T d1jj7a_         109 AYGLTQKPT--MEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS  186 (251)
T ss_dssp             HCSCSSCCC--HHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred             hhhhcccch--HHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhh
Confidence            221111100  00011100      11111          11223442            558999999999 8999999


Q ss_pred             HHHHHHHHHHhcC--CeeEEEEecCCCcccHHHhhhhh
Q 025758          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (248)
Q Consensus       147 ~~~ll~~le~~~~--~~~~Il~t~~~~~~~~~l~sR~~  182 (248)
                      ...+++.+.+..+  +.++|++||+.. .. ...+|+.
T Consensus       187 ~~~i~~~l~~l~~~~~~Tvi~itH~l~-~~-~~aDrI~  222 (251)
T d1jj7a_         187 QLQVEQLLYESPERYSRSVLLITQHLS-LV-EQADHIL  222 (251)
T ss_dssp             HHHHHHHHHTCGGGGGCEEEEECSCHH-HH-HTCSEEE
T ss_pred             HHHHHHHHHHHhhhcCCEEEEEeCCHH-HH-HhCCEEE
Confidence            9999999987644  467888888864 33 2356664

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.7e-12  Score=101.07  Aligned_cols=54  Identities=15%  Similarity=0.213  Sum_probs=41.2

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCe-eEEEEecCCCcccHHHhhhhhee
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRCLNI  184 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~-~~Il~t~~~~~~~~~l~sR~~~i  184 (248)
                      +|+++++||| .+||+..+..+.+++.+....+ .+|++||+ -.....+.+|+.++
T Consensus       150 ~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHd-l~~~~~~~dri~vl  205 (231)
T d1l7vc_         150 AGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHD-LNHTLRHAHRAWLL  205 (231)
T ss_dssp             TCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCC-HHHHHHHCSBCCBE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHHCCEEEEE
Confidence            5689999999 8999999999999999875544 45555555 44455788888544

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=4.1e-12  Score=101.57  Aligned_cols=134  Identities=18%  Similarity=0.202  Sum_probs=76.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHH-
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK-  115 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  115 (248)
                      +.+.||+|+||||+++++++ +..+..|.+.++|+.-. .....    .+...++.+++.+....    ........++ 
T Consensus        65 vaivG~nGsGKSTLl~~i~G-l~~p~~G~I~~~g~i~~-v~Q~~----~l~~~tv~eni~~~~~~----~~~~~~~~~~~  134 (281)
T d1r0wa_          65 LAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGRVSF-CSQFS----WIMPGTIKENIIFGVSY----DEYRYKSVVKA  134 (281)
T ss_dssp             EEEEESTTSSHHHHHHHHHT-SSCCSEEEEECCSCEEE-ECSSC----CCCSEEHHHHHTTTSCC----CHHHHHHHHHH
T ss_pred             EEEECCCCChHHHHHHHHhC-CCcCCCcEEEECCEEEE-Eeccc----cccCceeeccccccccc----cchHHHHHHHH
Confidence            77999999999999999998 77899999998885211 01100    00001111122111100    0000111111 


Q ss_pred             -----HHHhc----------CCCcCCC------------CCCeeEEEEeCC-CCCCHHHHHHHHHH-HHHhcCCeeEEEE
Q 025758          116 -----EMAKN----------RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT-MEKYSASCRLILC  166 (248)
Q Consensus       116 -----~~~~~----------~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~ll~~-le~~~~~~~~Il~  166 (248)
                           .+...          .+..+|+            ..+++|+++||| ..||+.....+++. +.....+.++|++
T Consensus       135 ~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~i  214 (281)
T d1r0wa_         135 CQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV  214 (281)
T ss_dssp             TTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEE
T ss_pred             HHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence                 01100          0111221            347889999999 79999988888765 4544556678888


Q ss_pred             ecCCCcccHHHhhhhh
Q 025758          167 CNSSSKVTEAIRSRCL  182 (248)
Q Consensus       167 t~~~~~~~~~l~sR~~  182 (248)
                      ||+.+. + ...+|+.
T Consensus       215 tH~~~~-l-~~aDrI~  228 (281)
T d1r0wa_         215 TSKMEH-L-RKADKIL  228 (281)
T ss_dssp             CSCHHH-H-HTCSEEE
T ss_pred             echHHH-H-HhCCEEE
Confidence            888643 2 3466663

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.26  E-value=1.8e-11  Score=97.28  Aligned_cols=213  Identities=12%  Similarity=0.139  Sum_probs=114.7

Q ss_pred             CCccccCCCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCc
Q 025758            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (248)
Q Consensus         1 ~~~~~ky~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~   80 (248)
                      |++..+ .+.+-++++|.++.++.|...    ...+++++||+|+|||++++.++..+.... .  .++...... ....
T Consensus         1 ~~f~~~-p~~~~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~-~--~i~~~~~~~-~~~~   71 (283)
T d2fnaa2           1 MLFDTS-PKDNRKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINELNLPY-I--YLDLRKFEE-RNYI   71 (283)
T ss_dssp             CTTCSS-CCCSGGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHHTCCE-E--EEEGGGGTT-CSCC
T ss_pred             CCcCCC-CCCChhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHCCCCe-E--EEEeccccc-cccc
Confidence            566654 335789999999999888764    335699999999999999999998763321 1  111110000 0000


Q ss_pred             ccccce------------------eeecccceeeeCCCCc----CcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeC
Q 025758           81 NIDLEL------------------TTLSSANHVELSPSDA----GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNE  138 (248)
Q Consensus        81 ~~~~~~------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE  138 (248)
                      ......                  ................    .......+.+.++.+...       ...+.++++||
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~~~i~id~  144 (283)
T d2fnaa2          72 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA-------SKDNVIIVLDE  144 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT-------CSSCEEEEEET
T ss_pred             cHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhh-------cccccccccch
Confidence            000000                  0000000000000000    001112244445554432       23567899999


Q ss_pred             CCCCCHHHHHHHHHHHHH---hcCCeeEEEEecCCCcccH---------H-HhhhhheeeecCCCHHHHHHHHHHHHHHc
Q 025758          139 VDKLSREAQHSLRRTMEK---YSASCRLILCCNSSSKVTE---------A-IRSRCLNIRINSPTEEQIVKVLEFIAKKE  205 (248)
Q Consensus       139 ~d~l~~~~~~~ll~~le~---~~~~~~~Il~t~~~~~~~~---------~-l~sR~~~i~~~~~~~~~~~~il~~~~~~~  205 (248)
                      .+.+.......++..+..   ......+++++.....+..         . ...+...+.+++++.++..+++.+.+...
T Consensus       145 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~  224 (283)
T d2fnaa2         145 AQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA  224 (283)
T ss_dssp             GGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHhhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhc
Confidence            976643322223333321   2233455665544321111         1 11233678999999999999999998887


Q ss_pred             CCCCCHHHHHHHHHHccccHHHHHHH
Q 025758          206 GLQLPSGFATRLAEKSNRSLRRAILS  231 (248)
Q Consensus       206 ~~~~~~~~~~~l~~~~~g~~r~~~~~  231 (248)
                      +++.+  .++.+.+.++|.+..+..+
T Consensus       225 ~~~~~--~~~~i~~~~~G~P~~L~~~  248 (283)
T d2fnaa2         225 DIDFK--DYEVVYEKIGGIPGWLTYF  248 (283)
T ss_dssp             TCCCC--CHHHHHHHHCSCHHHHHHH
T ss_pred             CCCHH--HHHHHHHHhCCCHHHHHHH
Confidence            87654  4778889999988754433

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.25  E-value=5.1e-13  Score=110.73  Aligned_cols=104  Identities=17%  Similarity=-0.004  Sum_probs=58.8

Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHHh------cCCeeEEEEecCCC-cccHHHhhhhheeeecCCCHHHHHHHHHHH
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKY------SASCRLILCCNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFI  201 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~------~~~~~~Il~t~~~~-~~~~~l~sR~~~i~~~~~~~~~~~~il~~~  201 (248)
                      ..+.++++||+|+|........-..++..      ....++|+|||+.. .+....+.++.++.+.++.......++..+
T Consensus       219 ~~~~~~~~DeiD~l~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i  298 (362)
T d1svma_         219 DLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFL  298 (362)
T ss_dssp             TCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHH
T ss_pred             CCCCeEEEehHhhcccccCCcchhhhhhhhhchhhhccCCceeecccccccccccccCceEEeecCCCcHHHHHHHHHHH
Confidence            35567788888766322111000000100      11234889999654 333344444455555555566666778888


Q ss_pred             HHHcCCCCCHHHHHHHH-HHccccHHHHHHHH
Q 025758          202 AKKEGLQLPSGFATRLA-EKSNRSLRRAILSF  232 (248)
Q Consensus       202 ~~~~~~~~~~~~~~~l~-~~~~g~~r~~~~~l  232 (248)
                      +.++.+..+.+.+..++ ..+++|++..++.+
T Consensus       299 ~~~~~l~~~~~~L~~li~~~s~~D~~~~i~~~  330 (362)
T d1svma_         299 LEKRIIQSGIALLLMLIWYRPVAEFAQSIQSR  330 (362)
T ss_dssp             HHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHH
T ss_pred             hcccCCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence            88888888777776655 44556677666543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.18  E-value=4.9e-11  Score=96.42  Aligned_cols=126  Identities=19%  Similarity=0.215  Sum_probs=73.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCcchhHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (248)
                      +||+||||||||.+|+++|+++.... ..+.+.+.                        ++.....|. ....+++.++.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~~~-~~~~~~~~------------------------~~~~~~~G~-~e~~~~~~f~~  179 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGGKD-KYATVRFG------------------------EPLSGYNTD-FNVFVDDIARA  179 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHTTS-CCEEEEBS------------------------CSSTTCBCC-HHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCC-CeEEEEhh------------------------Hhhhcccch-HHHHHHHHHHH
Confidence            66799999999999999999874221 11112111                        111111111 22235555655


Q ss_pred             HHhcCCCcCCCCCCeeEEEEeCCCCCCHH------------HHHHHHHHHHHhc--CCeeEEEEecCCCcccHHHh----
Q 025758          117 MAKNRPIDTKGKRGFKVLVLNEVDKLSRE------------AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIR----  178 (248)
Q Consensus       117 ~~~~~~~~~~~~~~~~viiiDE~d~l~~~------------~~~~ll~~le~~~--~~~~~Il~t~~~~~~~~~l~----  178 (248)
                      ...           +.||||||+|.+...            ..+.++.-++...  .+..+|.+|| +..+.+++.    
T Consensus       180 a~~-----------~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN-~~~~~~~i~~~~~  247 (321)
T d1w44a_         180 MLQ-----------HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKIVELVK  247 (321)
T ss_dssp             HHH-----------CSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CCCCCHHHHHHHH
T ss_pred             Hhh-----------ccEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCC-Ccccccchhhhhh
Confidence            432           359999999988532            2345665665432  3345555555 554545443    


Q ss_pred             --hhh-heeeecCCCHHHHHHHHHH
Q 025758          179 --SRC-LNIRINSPTEEQIVKVLEF  200 (248)
Q Consensus       179 --sR~-~~i~~~~~~~~~~~~il~~  200 (248)
                        +|+ ..+.+++|+.+...++|..
T Consensus       248 r~~Rf~~~v~v~~pd~~~r~~il~~  272 (321)
T d1w44a_         248 EASRSNSTSLVISTDVDGEWQVLTR  272 (321)
T ss_dssp             HHHHHSCSEEEEECSSTTEEEEEEE
T ss_pred             ccCcccceeecCCCChHHHHHHHHH
Confidence              355 6788888888877766653

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.05  E-value=6e-10  Score=82.59  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=26.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      +++++||||+||||+++.+++.+ .+..+.+...+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l-~~~~g~~~~~~   35 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERL-GKRAIGFWTEE   35 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH-GGGEEEEEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcC-CCCcceEEECC
Confidence            47899999999999999999965 44555554443

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.90  E-value=4.8e-08  Score=82.40  Aligned_cols=92  Identities=16%  Similarity=0.315  Sum_probs=61.3

Q ss_pred             CeeEEEEeCCCCCC------------HHHHHHHHHHHHHhcCC----------eeEEEEec----CCCcccHHHhhhh-h
Q 025758          130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYSAS----------CRLILCCN----SSSKVTEAIRSRC-L  182 (248)
Q Consensus       130 ~~~viiiDE~d~l~------------~~~~~~ll~~le~~~~~----------~~~Il~t~----~~~~~~~~l~sR~-~  182 (248)
                      ...++++||++..-            ...+..++..++.....          ..+|....    .+..+.|.|..|+ .
T Consensus       249 ~~~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi  328 (443)
T d1g41a_         249 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI  328 (443)
T ss_dssp             HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCE
T ss_pred             ccCccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEE
Confidence            45589999997541            23455677777643211          11322221    1236889999998 7


Q ss_pred             eeeecCCCHHHHHHHHHH-----------HHHHcCCC--CCHHHHHHHHHHc
Q 025758          183 NIRINSPTEEQIVKVLEF-----------IAKKEGLQ--LPSGFATRLAEKS  221 (248)
Q Consensus       183 ~i~~~~~~~~~~~~il~~-----------~~~~~~~~--~~~~~~~~l~~~~  221 (248)
                      .+.+.+++.+++.+||..           .+..+|+.  ++++++..|++.+
T Consensus       329 ~v~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A  380 (443)
T d1g41a_         329 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA  380 (443)
T ss_dssp             EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred             EEEccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHH
Confidence            899999999999999853           23335665  5799999998665

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.73  E-value=1.1e-07  Score=75.38  Aligned_cols=192  Identities=16%  Similarity=0.175  Sum_probs=96.7

Q ss_pred             cccccHHHHHHHHHHhhc---CCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccce-eee
Q 025758           14 QVIVHQDIAQNLKKLVTE---QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL-TTL   89 (248)
Q Consensus        14 ~lig~~~~~~~l~~~~~~---~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   89 (248)
                      +++|.+.-++.+..++.+   .....+.++|+.|+||||+|+.+...... . .....++..|......... ... ...
T Consensus        21 ~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~-~-~~~~f~~~~Wv~vs~~~~~-~~l~~~~   97 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-L-IGINYDSIVWLKDSGTAPK-STFDLFT   97 (277)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-T-BTTTBSEEEEEECCCCSTT-HHHHHHH
T ss_pred             ceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhh-h-hhhcCceEEEEEecCCCCH-HHHHHHH
Confidence            467888888888777643   22233889999999999999999874211 0 0001112222111110000 000 000


Q ss_pred             -c-----ccceeeeCCCCcCcchhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeE
Q 025758           90 -S-----SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRL  163 (248)
Q Consensus        90 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~  163 (248)
                       .     ......-.+..............+....         ....-++++|+++.  ....    +.+.  ....++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---------~~kr~LlVLDDv~~--~~~~----~~~~--~~~sri  160 (277)
T d2a5yb3          98 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALI---------DRPNTLFVFDDVVQ--EETI----RWAQ--ELRLRC  160 (277)
T ss_dssp             HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHT---------TSTTEEEEEEEECC--HHHH----HHHH--HTTCEE
T ss_pred             HHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHh---------ccCCeeEecchhhH--Hhhh----hhhc--ccCceE
Confidence             0     0000000000001111111111111111         22456899999963  2222    2222  123456


Q ss_pred             EEEecCCCcccHHHhhhhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccccHH
Q 025758          164 ILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEKSNRSLR  226 (248)
Q Consensus       164 Il~t~~~~~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~~~-~~~~~~~~~l~~~~~g~~r  226 (248)
                      |+||.+ ..+...+.+++..+.+.+++.++..+.+.+.+..... ...++....|++.|+|.+=
T Consensus       161 lvTTR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPL  223 (277)
T d2a5yb3         161 LVTTRD-VEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPA  223 (277)
T ss_dssp             EEEESB-GGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHH
T ss_pred             EEEeeh-HHHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHH
Confidence            666554 4666666677788999999999999988654322211 1125556788899988753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=98.65  E-value=2.6e-08  Score=74.22  Aligned_cols=38  Identities=24%  Similarity=0.453  Sum_probs=29.4

Q ss_pred             HHHHHHHHhhcCCCCe-eEEECCCCCCHHHHHHHHHHHH
Q 025758           21 IAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~-ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      -+..|..++++..-.+ ++|+||++||||+++.++++.+
T Consensus        39 Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          39 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            3456667775443344 9999999999999999999865

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.2e-07  Score=69.74  Aligned_cols=27  Identities=37%  Similarity=0.618  Sum_probs=23.7

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      .+++|+|||||||||+++.+++.+...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            468999999999999999999977543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.54  E-value=2.8e-08  Score=78.20  Aligned_cols=48  Identities=27%  Similarity=0.520  Sum_probs=33.8

Q ss_pred             cccccccHHHHHHHHHHh---hcCCCCe-eEEECCCCCCHHHHHHHHHHHHc
Q 025758           12 LDQVIVHQDIAQNLKKLV---TEQDCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        12 ~~~lig~~~~~~~l~~~~---~~~~~~~-ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +.+.-+++.+...+....   .....|. ++|+|||||||||+|+++|+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_           6 FTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            344444555555555543   3344455 99999999999999999999774

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=98.31  E-value=1.1e-05  Score=67.01  Aligned_cols=54  Identities=24%  Similarity=0.351  Sum_probs=41.3

Q ss_pred             CCCCcccccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCC
Q 025758            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG   62 (248)
Q Consensus         8 ~p~~~~~lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~   62 (248)
                      .+.+++++--.....+.+++++... ..-++++||+||||||++.++..++..+.
T Consensus       133 ~~~~l~~LG~~~~~~~~l~~l~~~~-~GliLvtGpTGSGKSTTl~~~l~~~~~~~  186 (401)
T d1p9ra_         133 TRLDLHSLGMTAHNHDNFRRLIKRP-HGIILVTGPTGSGKSTTLYAGLQELNSSE  186 (401)
T ss_dssp             TCCCGGGSCCCHHHHHHHHHHHTSS-SEEEEEECSTTSCHHHHHHHHHHHHCCTT
T ss_pred             cchhhhhhcccHHHHHHHHHHHhhh-hceEEEEcCCCCCccHHHHHHhhhhcCCC
Confidence            3457778766777888888887432 22399999999999999999999875543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.25  E-value=2.8e-07  Score=67.15  Aligned_cols=26  Identities=38%  Similarity=0.545  Sum_probs=23.2

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+.++|+|||||||||+|+.+|..+.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Confidence            45689999999999999999999873

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.6e-07  Score=66.51  Aligned_cols=24  Identities=33%  Similarity=0.569  Sum_probs=22.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .|+|+||+||||||+|+.+|..+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999873

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.20  E-value=6.8e-06  Score=58.30  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=18.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ++++|||||||||+|+.++..
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999988764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=7.9e-06  Score=61.47  Aligned_cols=28  Identities=39%  Similarity=0.500  Sum_probs=23.5

Q ss_pred             CCCCe-eEEECCCCCCHHHHHHHHHHHHc
Q 025758           32 QDCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        32 ~~~~~-ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ++.|+ ++|.||+|+||||++--+|..+.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45566 88999999999999998998664

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=98.16  E-value=4.6e-06  Score=65.33  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=27.2

Q ss_pred             HHHHHHHhhcC-CCCe-eEEECCCCCCHHHHHHHHHHHH
Q 025758           22 AQNLKKLVTEQ-DCPH-LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        22 ~~~l~~~~~~~-~~~~-ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ...|..++..+ ...+ ++|+||+++|||+++.+++..+
T Consensus        90 ~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34555566433 2233 9999999999999999999843

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.15  E-value=6.2e-07  Score=65.35  Aligned_cols=26  Identities=23%  Similarity=0.521  Sum_probs=23.0

Q ss_pred             CCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           33 DCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        33 ~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +..+|+|+|||||||||+++.++..+
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            44569999999999999999999975

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=7.1e-07  Score=64.88  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=23.3

Q ss_pred             CCCe-eEEECCCCCCHHHHHHHHHHHHc
Q 025758           33 DCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        33 ~~~~-ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +.++ ++|.|||||||||+|+.+++.+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3445 88999999999999999999873

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=7.5e-07  Score=64.76  Aligned_cols=26  Identities=35%  Similarity=0.480  Sum_probs=23.2

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      |.++|.|++||||||+++.+|..+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCC
Confidence            56889999999999999999998843

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.11  E-value=5.6e-07  Score=66.16  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=21.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .|+|+||+||||||+|+.+|..+
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999976

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=8.7e-06  Score=66.50  Aligned_cols=37  Identities=16%  Similarity=0.291  Sum_probs=26.2

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecC
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~  169 (248)
                      ..+++||||+.+++......   ++...+.+.++|++...
T Consensus       261 ~~d~lIIDEaSmv~~~l~~~---ll~~~~~~~~lILvGD~  297 (359)
T d1w36d1         261 HLDVLVVDEASMIDLPMMSR---LIDALPDHARVIFLGDR  297 (359)
T ss_dssp             SCSEEEECSGGGCBHHHHHH---HHHTCCTTCEEEEEECT
T ss_pred             ccceeeehhhhccCHHHHHH---HHHHhcCCCEEEEECCh
Confidence            56799999999998765444   44444556788887554

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1.1e-05  Score=61.78  Aligned_cols=27  Identities=22%  Similarity=0.201  Sum_probs=22.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCCC
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGPG   62 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~~   62 (248)
                      .++++|||.+||||++|.++-...-..
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~l~~~laq   69 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTALIALMAY   69 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHT
T ss_pred             EEEEeccCchhhHHHHHHHHHHHHHHH
Confidence            489999999999999999987554333

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.06  E-value=1.4e-05  Score=60.11  Aligned_cols=28  Identities=25%  Similarity=0.297  Sum_probs=19.1

Q ss_pred             CCCCe-eEEECCCCCCHHHHHHHHHHHHc
Q 025758           32 QDCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        32 ~~~~~-ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+.|+ ++|.||+|+||||++--+|..+.
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34566 88999999999999888887663

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=4.9e-06  Score=62.81  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=22.6

Q ss_pred             CCCe-eEEECCCCCCHHHHHHHHHHHHc
Q 025758           33 DCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        33 ~~~~-ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ..|+ ++|+||+|+||||++--+|.++.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4456 89999999999999888887664

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.04  E-value=1.3e-06  Score=63.79  Aligned_cols=24  Identities=25%  Similarity=0.283  Sum_probs=22.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      |+|+|+|||||||+|+.+|..|..
T Consensus         9 I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           9 IFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            889999999999999999998843

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.04  E-value=1.1e-06  Score=63.69  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=20.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++|+|||||||||+|+.+++.+
T Consensus         5 I~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            8899999999999999999865

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.02  E-value=5.3e-06  Score=63.26  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      ++++|||.+||||++|.++-...-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l~~il   61 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTALIALL   61 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHHHHHH
Confidence            899999999999999988865443

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.4e-05  Score=58.33  Aligned_cols=20  Identities=40%  Similarity=0.597  Sum_probs=18.5

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++++|+|||||||+|+.++.
T Consensus        17 iil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          17 VVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHTG
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999988765

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.01  E-value=1.7e-06  Score=62.68  Aligned_cols=24  Identities=42%  Similarity=0.574  Sum_probs=21.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +++|+|+|||||||+++.+|+.+.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999873

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.00  E-value=1.7e-06  Score=62.99  Aligned_cols=23  Identities=17%  Similarity=0.404  Sum_probs=21.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      -|+|+|++||||||+|+.+++.+
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            38899999999999999999976

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.99  E-value=7.6e-05  Score=55.85  Aligned_cols=24  Identities=38%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|+||+|+||||++--+|..+.
T Consensus         8 vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           8 VVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            489999999999999988898664

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.7e-06  Score=64.09  Aligned_cols=26  Identities=35%  Similarity=0.488  Sum_probs=22.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~   62 (248)
                      |+|+|+|||||||+|+.+|..+....
T Consensus        22 I~L~G~pGSGKTTiAk~La~~l~~~~   47 (195)
T d1x6va3          22 VWLTGLSGAGKTTVSMALEEYLVCHG   47 (195)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            77999999999999999999875443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.96  E-value=3.3e-05  Score=62.00  Aligned_cols=46  Identities=17%  Similarity=0.320  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccce
Q 025758           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK   67 (248)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~   67 (248)
                      +.....|..++..+.  +++++||+||||||+++++++.+ .+...-+.
T Consensus       153 ~~~~~~l~~~v~~~~--nili~G~tgSGKTT~l~al~~~i-~~~~rivt  198 (323)
T d1g6oa_         153 EQAISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI-PKEERIIS  198 (323)
T ss_dssp             HHHHHHHHHHHHHTC--CEEEEESTTSSHHHHHHHHGGGS-CTTCCEEE
T ss_pred             HHHHHHHHHHHHhCC--CEEEEeeccccchHHHHHHhhhc-ccccceee
Confidence            456777888887653  58999999999999999999843 44433333

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.96  E-value=2.1e-06  Score=62.66  Aligned_cols=24  Identities=25%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|.|++||||||+++.+|..+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999884

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=2.7e-06  Score=61.51  Aligned_cols=28  Identities=32%  Similarity=0.476  Sum_probs=23.9

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      +|.+.|+|++||||||+++.+++.+..+
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            3568999999999999999999977433

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.95  E-value=2e-06  Score=63.99  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=22.6

Q ss_pred             CCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           33 DCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        33 ~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +++.|++.|||||||||+|+.+|..+
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            33448999999999999999999976

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.93  E-value=6e-06  Score=57.49  Aligned_cols=42  Identities=12%  Similarity=0.176  Sum_probs=27.0

Q ss_pred             CCCeeEEEEeCCCCCCHHHHH--HHHHHHHHhcCCeeEEEEecCC
Q 025758          128 KRGFKVLVLNEVDKLSREAQH--SLRRTMEKYSASCRLILCCNSS  170 (248)
Q Consensus       128 ~~~~~viiiDE~d~l~~~~~~--~ll~~le~~~~~~~~Il~t~~~  170 (248)
                      ..+.+++|+||++.+++....  .++..+... .+..+|+.|..|
T Consensus        96 ~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~-~~~~~l~lTATP  139 (140)
T d1yksa1          96 VVNWEVIIMDEAHFLDPASIAARGWAAHRARA-NESATILMTATP  139 (140)
T ss_dssp             CCCCSEEEETTTTCCSHHHHHHHHHHHHHHHT-TSCEEEEECSSC
T ss_pred             ccceeEEEEccccccChhhHHHHHHHHHHhhC-CCCCEEEEEcCC
Confidence            346789999999998766433  334444433 356677776554

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.91  E-value=2.3e-05  Score=54.58  Aligned_cols=40  Identities=5%  Similarity=0.231  Sum_probs=27.2

Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHHhc--CCeeEEEEec
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS--ASCRLILCCN  168 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~--~~~~~Il~t~  168 (248)
                      .+.+++|+||++.++......+..+++...  ....++..|.
T Consensus        93 ~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TA  134 (136)
T d1a1va1          93 GAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATA  134 (136)
T ss_dssp             CCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred             hcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeC
Confidence            366799999999998877666666666443  2334555554

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=3.5e-06  Score=62.80  Aligned_cols=27  Identities=26%  Similarity=0.492  Sum_probs=23.3

Q ss_pred             CCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           32 QDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        32 ~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ...+-++|.|||||||||.|+.+|+.+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            344558999999999999999999976

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.88  E-value=3.4e-06  Score=62.48  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.6

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +..++|.|||||||||+|+.++..+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3458999999999999999999987

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.88  E-value=4.2e-06  Score=61.37  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=21.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +|+|.|||||||||.|+.+|+.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999999987

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.88  E-value=4.3e-06  Score=62.12  Aligned_cols=27  Identities=26%  Similarity=0.405  Sum_probs=23.6

Q ss_pred             CCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           32 QDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        32 ~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+...++|.|||||||||+++.+|..+
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence            355668999999999999999999976

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.85  E-value=5.7e-06  Score=61.24  Aligned_cols=24  Identities=33%  Similarity=0.600  Sum_probs=21.6

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ..++|.|||||||||.|+.+|+.+
T Consensus         4 ~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            347889999999999999999977

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.85  E-value=2e-06  Score=62.58  Aligned_cols=22  Identities=50%  Similarity=0.674  Sum_probs=20.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++|.|||||||||+|+.+++.+
T Consensus         7 I~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTCS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999854

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=5.8e-06  Score=60.71  Aligned_cols=24  Identities=38%  Similarity=0.683  Sum_probs=21.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +++|.|||||||||.|+.+|+.+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999873

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.83  E-value=5.8e-06  Score=60.80  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .|+|.|||||||||.|+.+|..+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            378999999999999999999873

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=6.9e-06  Score=61.55  Aligned_cols=25  Identities=28%  Similarity=0.483  Sum_probs=22.4

Q ss_pred             Ce-eEEECCCCCCHHHHHHHHHHHHc
Q 025758           35 PH-LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        35 ~~-ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      |. ++++|.|||||||+|+.+++.+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45 89999999999999999998774

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.77  E-value=0.00017  Score=53.86  Aligned_cols=23  Identities=30%  Similarity=0.274  Sum_probs=20.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ++|.||+|+||||++--+|..+.
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999998664

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=7.3e-06  Score=60.81  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .|+|.|||||||||.|+.+|..+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999976

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.75  E-value=6.2e-05  Score=55.77  Aligned_cols=51  Identities=16%  Similarity=0.174  Sum_probs=30.1

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS  179 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~s  179 (248)
                      ....++++||++.+..+ ....+...+.....+..++..|..+......+..
T Consensus       124 ~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l~~SATp~~~~~~~~~  175 (200)
T d1wp9a1         124 EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIME  175 (200)
T ss_dssp             TSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHH
T ss_pred             cccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcEEEEEecCCCcHHHHHH
Confidence            45678999999876532 3344444444444556677776666544444433

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=8.7e-06  Score=59.76  Aligned_cols=23  Identities=35%  Similarity=0.674  Sum_probs=21.2

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++|.|||||||||.++.+|..+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999976

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.73  E-value=1e-05  Score=59.13  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=22.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~   62 (248)
                      |+|.|++||||||+++.++..+....
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~l~~~~   29 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMDNLRKEG   29 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            78999999999999999999875443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1e-05  Score=59.22  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=21.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .++|.|||||||||.++.+|+.+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999999773

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.67  E-value=1.2e-05  Score=59.76  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.7

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.++|.|||||||||.|+.+|+.+
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            448899999999999999999965

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.67  E-value=5e-05  Score=58.01  Aligned_cols=38  Identities=18%  Similarity=0.301  Sum_probs=27.7

Q ss_pred             HHHHhhcCCCCe--eEEECCCCCCHHHHHHHHHHHHcCCC
Q 025758           25 LKKLVTEQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPG   62 (248)
Q Consensus        25 l~~~~~~~~~~~--ill~Gp~G~GKTtla~~ia~~l~~~~   62 (248)
                      |...+..|=.++  ++++||||+|||+++.-+|.......
T Consensus        15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~   54 (242)
T d1tf7a2          15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANK   54 (242)
T ss_dssp             HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT
T ss_pred             HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc
Confidence            445554333333  89999999999999999998765444

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1.5e-05  Score=60.19  Aligned_cols=25  Identities=36%  Similarity=0.583  Sum_probs=22.2

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      |-|.+.|||||||||.|+.+|..+.
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4578889999999999999999873

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.63  E-value=2.2e-05  Score=57.84  Aligned_cols=24  Identities=33%  Similarity=0.253  Sum_probs=21.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      |.+.||+||||||+|+.++..+..
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcc
Confidence            679999999999999999986643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.59  E-value=1.6e-05  Score=58.30  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      ++|.|++||||||+++.+++.+...
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            6789999999999999999987443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.58  E-value=0.0025  Score=45.79  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=19.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .|+|.|.+|+||||+++.+.+
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999886

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.53  E-value=2.5e-05  Score=59.03  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +.+.|||||||||.|+.+|..+.
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45779999999999999999873

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=0.00022  Score=55.33  Aligned_cols=48  Identities=23%  Similarity=0.402  Sum_probs=32.7

Q ss_pred             HHHHHhhcCCCC--e-eEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758           24 NLKKLVTEQDCP--H-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (248)
Q Consensus        24 ~l~~~~~~~~~~--~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~   71 (248)
                      .|...+-.|.++  + ..|+||||+|||+++..++.....+....+.++..
T Consensus        41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            444455324433  2 89999999999999999998776555444444443

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.50  E-value=4.3e-05  Score=56.95  Aligned_cols=41  Identities=20%  Similarity=0.288  Sum_probs=27.6

Q ss_pred             CeeEEEEeCCCCCCH----HHHHHHHHHHHHhcCCeeEEEEecCC
Q 025758          130 GFKVLVLNEVDKLSR----EAQHSLRRTMEKYSASCRLILCCNSS  170 (248)
Q Consensus       130 ~~~viiiDE~d~l~~----~~~~~ll~~le~~~~~~~~Il~t~~~  170 (248)
                      ...++++||++.+..    .....++..+.+...+..+|+.|...
T Consensus       138 ~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl  182 (202)
T d2p6ra3         138 AVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA  182 (202)
T ss_dssp             GCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             hhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcCCC
Confidence            557999999987642    22344666666666677777776554

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.42  E-value=7.4e-05  Score=56.05  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      -+.|+|.|||||||+|+.++..+.
T Consensus        26 vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          26 TIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            399999999999999999998663

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=5.5e-05  Score=55.89  Aligned_cols=22  Identities=36%  Similarity=0.767  Sum_probs=20.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      |+|+||+||||||+++.++...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999999864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=4.9e-05  Score=55.93  Aligned_cols=22  Identities=36%  Similarity=0.754  Sum_probs=20.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      |+|+||+|+||||+++.++...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8899999999999999998854

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00061  Score=48.18  Aligned_cols=20  Identities=35%  Similarity=0.624  Sum_probs=18.6

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++|.|++|+|||||++.+.+
T Consensus         4 I~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998885

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.30  E-value=6.9e-05  Score=54.82  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=20.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++|.||+|+||||+++.+.+..
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            7899999999999999998753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=7.2e-05  Score=56.08  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      |.+.|++||||||+++.++..+.
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            67999999999999999998663

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0038  Score=46.18  Aligned_cols=54  Identities=15%  Similarity=0.230  Sum_probs=35.4

Q ss_pred             CCCeeEEEEeCCCCC-CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          128 KRGFKVLVLNEVDKL-SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       128 ~~~~~viiiDE~d~l-~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ...-+.+++||+|.| +..-...+.++++..+.+..++++|.....-...+..++
T Consensus       144 ~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~  198 (206)
T d1veca_         144 VDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSH  198 (206)
T ss_dssp             CTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred             ccccceEEEeccccccccchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHH
Confidence            346678999999855 444455677777777777777887766654344444443

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.27  E-value=8.6e-05  Score=53.33  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=22.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~   62 (248)
                      +.++|++||||||++..++..|..++
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            56999999999999999998876543

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.25  E-value=0.00087  Score=49.81  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=27.0

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+...+.+..++.+   .+.++.+|+|+|||.++-.++..+
T Consensus        72 r~yQ~eav~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~  109 (206)
T d2fz4a1          72 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL  109 (206)
T ss_dssp             CHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHhC---CCcEEEeCCCCCceehHHhHHHHh
Confidence            34445556666643   246788999999999988888755

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.18  E-value=0.0017  Score=50.27  Aligned_cols=48  Identities=25%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             HHHHHhhcCCCC--e-eEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758           24 NLKKLVTEQDCP--H-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (248)
Q Consensus        24 ~l~~~~~~~~~~--~-ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~   71 (248)
                      .|...+..|.+|  . ..++||+|+|||+++..++.....+....+.++..
T Consensus        44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            344444334433  2 78999999999999999998765554444444443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.0077  Score=42.71  Aligned_cols=20  Identities=40%  Similarity=0.695  Sum_probs=18.7

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      |.+.|++|+||||+++.+.+
T Consensus         3 V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           3 VLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999975

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0042  Score=46.39  Aligned_cols=53  Identities=13%  Similarity=0.278  Sum_probs=36.9

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ..-+.+++||+|.|-.. -...+..+++..+++..++++|.....-...+.+++
T Consensus       154 ~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~  207 (218)
T d2g9na1         154 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKF  207 (218)
T ss_dssp             TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred             ccceEEEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHH
Confidence            45679999999876433 356667777777777888888887765444555554

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00018  Score=53.44  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=24.9

Q ss_pred             HHHHhhcCCCCe--eEEECCCCCCHHHHHHHHHHHH
Q 025758           25 LKKLVTEQDCPH--LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        25 l~~~~~~~~~~~--ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      |...+..|-.++  ++++||||+|||+++.-+|...
T Consensus        12 LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          12 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            444443332333  8999999999999999999754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00067  Score=48.29  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=18.6

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+||||++..+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.12  E-value=0.0014  Score=50.76  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=26.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCCCcccceeccc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~   71 (248)
                      ..|+||+|+|||+++..++......+...+.++..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE   97 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE   97 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence            88999999999999988887555554444445443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00038  Score=54.45  Aligned_cols=28  Identities=32%  Similarity=0.782  Sum_probs=22.7

Q ss_pred             CCCCe-eEEECCCCCCHHHHHHHHHHHHc
Q 025758           32 QDCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        32 ~~~~~-ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ++.|. |.|.|++||||||++..+...+.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L~   52 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM   52 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHHH
Confidence            34455 67999999999999999887663

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.0029  Score=47.78  Aligned_cols=42  Identities=14%  Similarity=0.085  Sum_probs=35.1

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      |..+.+.+...+..+.....||+|..|||||..+...+....
T Consensus        60 Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~  101 (233)
T d2eyqa3          60 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV  101 (233)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHH
Confidence            677778888888887777799999999999999988886553

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.10  E-value=0.0014  Score=48.81  Aligned_cols=53  Identities=11%  Similarity=0.285  Sum_probs=34.6

Q ss_pred             CCeeEEEEeCCCCC-CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKL-SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l-~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ..-+.+++||+|.| +......+.++++..+.+..++++|.....-...+..+.
T Consensus       144 ~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~  197 (208)
T d1hv8a1         144 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKY  197 (208)
T ss_dssp             TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHH
T ss_pred             ccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHH
Confidence            45679999999854 444455677777777777778888766543333444443

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.05  E-value=0.0019  Score=47.79  Aligned_cols=53  Identities=8%  Similarity=0.159  Sum_probs=34.6

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      .+-+.+++||+|.+... -...+..++...+++..+++.|....+-...+.+++
T Consensus       146 ~~l~~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~  199 (209)
T d1q0ua_         146 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY  199 (209)
T ss_dssp             GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH
T ss_pred             ccceEEEEeecccccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHH
Confidence            46678999999876433 244566666666677778888766644444555554

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.04  E-value=0.0031  Score=48.42  Aligned_cols=21  Identities=24%  Similarity=0.526  Sum_probs=19.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      +|+|.|.+|+||||++..|.+
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            499999999999999999986

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.02  E-value=0.00051  Score=48.76  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=22.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      ++|.|+=|+||||++|.+++.+..
T Consensus        36 i~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          36 VYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEecCCCccHHHHHHHHHhhccc
Confidence            889999999999999999998744

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00021  Score=52.05  Aligned_cols=21  Identities=24%  Similarity=0.605  Sum_probs=19.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ++|+||+|+||||+++.+.+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999998874

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.0016  Score=48.04  Aligned_cols=21  Identities=43%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .|+|.|++|+||||+.+.+.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999986

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00047  Score=55.14  Aligned_cols=29  Identities=28%  Similarity=0.375  Sum_probs=24.0

Q ss_pred             CCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           32 QDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        32 ~~~~~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      ++...|-++||||+||||++..++..+..
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            34444999999999999999999986644

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.96  E-value=0.00024  Score=53.95  Aligned_cols=22  Identities=41%  Similarity=0.606  Sum_probs=20.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +++.|++|+|||||...+.+++
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Confidence            6899999999999999999865

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.011  Score=43.81  Aligned_cols=53  Identities=9%  Similarity=0.249  Sum_probs=36.6

Q ss_pred             CCeeEEEEeCCCCCCHH-HHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ...+.+++||+|.|-.. -...+.++++..+.+..++++|.....-...+..++
T Consensus       150 ~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~  203 (212)
T d1qdea_         150 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKF  203 (212)
T ss_dssp             TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHH
T ss_pred             CcceEEeehhhhhhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHH
Confidence            46779999999866432 355677777777777777887776655455566655

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.94  E-value=0.00024  Score=50.06  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|++|+||||+++.+.+.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00046  Score=52.55  Aligned_cols=37  Identities=19%  Similarity=0.077  Sum_probs=26.6

Q ss_pred             HHHHHhhcCCCCe--eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           24 NLKKLVTEQDCPH--LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        24 ~l~~~~~~~~~~~--ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      .|...+..|-+++  ++++||||+|||+++..++.....
T Consensus        25 ~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~~   63 (258)
T d1v5wa_          25 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQL   63 (258)
T ss_dssp             HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3444544443333  899999999999999999975433

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00019  Score=54.39  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=23.2

Q ss_pred             HHHHhhcCCCCe--eEEECCCCCCHHHHHHHHHH
Q 025758           25 LKKLVTEQDCPH--LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        25 l~~~~~~~~~~~--ill~Gp~G~GKTtla~~ia~   56 (248)
                      |...+..|-.++  ++|+||||+|||+++.-++.
T Consensus        23 LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          23 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             HHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             HHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            444443333333  89999999999999988875

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.01  Score=43.82  Aligned_cols=54  Identities=13%  Similarity=0.281  Sum_probs=34.7

Q ss_pred             CCCeeEEEEeCCCCC-CH-HHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          128 KRGFKVLVLNEVDKL-SR-EAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       128 ~~~~~viiiDE~d~l-~~-~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ..+-+.+++||+|.| +. .....+.++++..+....++++|.....-...+..++
T Consensus       143 l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~  198 (207)
T d1t6na_         143 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF  198 (207)
T ss_dssp             CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred             ccccceeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHH
Confidence            346679999999855 42 4455566666666666778887766655444555544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00026  Score=52.87  Aligned_cols=21  Identities=43%  Similarity=0.773  Sum_probs=19.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ++|+||+|+||||+.+.+...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00028  Score=55.89  Aligned_cols=28  Identities=25%  Similarity=0.226  Sum_probs=23.7

Q ss_pred             CCCCe-eEEECCCCCCHHHHHHHHHHHHc
Q 025758           32 QDCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        32 ~~~~~-ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ++.|. |.+.|++||||||+|+.++..+.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            44555 88999999999999999998663

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.91  E-value=0.0002  Score=52.74  Aligned_cols=27  Identities=26%  Similarity=0.490  Sum_probs=23.5

Q ss_pred             hcCCCCeeEEECCCCCCHHHHHHHHHH
Q 025758           30 TEQDCPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        30 ~~~~~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      +.+++|.+.|.|++|+||||+.+.+.+
T Consensus        19 p~~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          19 PEGGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHhcC
Confidence            345677799999999999999999985

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.89  E-value=0.00034  Score=53.36  Aligned_cols=35  Identities=31%  Similarity=0.290  Sum_probs=25.3

Q ss_pred             HHHHhhcCCCCe--eEEECCCCCCHHHHHHHHHHHHc
Q 025758           25 LKKLVTEQDCPH--LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        25 l~~~~~~~~~~~--ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      |...+..|-+++  ++++||||+|||+++.-++....
T Consensus        25 LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          25 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             HHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            344443333333  89999999999999999987553

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.87  E-value=0.00011  Score=54.27  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=21.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .|.|.|+.||||||+++.+++.+
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGGT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999865

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.017  Score=42.40  Aligned_cols=53  Identities=11%  Similarity=0.253  Sum_probs=35.2

Q ss_pred             CCeeEEEEeCCCCC-CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          129 RGFKVLVLNEVDKL-SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       129 ~~~~viiiDE~d~l-~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ..-+.+++||+|.| +..-...+..+++..+....++++|.....-...+..++
T Consensus       142 ~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~  195 (206)
T d1s2ma1         142 SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKH  195 (206)
T ss_dssp             TTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred             ccceEEEeechhhhhhhhhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHH
Confidence            35568999999855 444566677777777777777887766554333455444

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.85  E-value=0.00084  Score=53.53  Aligned_cols=28  Identities=32%  Similarity=0.283  Sum_probs=23.2

Q ss_pred             CCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           32 QDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        32 ~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ++...+-++||||+||||+...++..+.
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~   76 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLT   76 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence            3344499999999999999999998654

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0048  Score=46.26  Aligned_cols=54  Identities=15%  Similarity=0.305  Sum_probs=36.5

Q ss_pred             CCCeeEEEEeCCCCC-CHHHHHHHHHHHHHhcCCeeEEEEecCCCcccHHHhhhh
Q 025758          128 KRGFKVLVLNEVDKL-SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (248)
Q Consensus       128 ~~~~~viiiDE~d~l-~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~~~~l~sR~  181 (248)
                      ...-+.+++||+|.| +..-...+.++++..+....++++|.....-...+..++
T Consensus       157 ~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~  211 (222)
T d2j0sa1         157 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKF  211 (222)
T ss_dssp             CTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGT
T ss_pred             cccceeeeecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHH
Confidence            346678999999855 444566677777777777778888776654344454444

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00044  Score=51.16  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=20.8

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      |.++|.|++|+|||||+..+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56999999999999999999873

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00049  Score=48.43  Aligned_cols=20  Identities=45%  Similarity=0.659  Sum_probs=19.0

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++|.|++|+|||||+..+.+
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999887

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0006  Score=50.90  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=22.5

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      .|.|.|+.||||||.++.+++.|...
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~~L~~~   30 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVEALCAA   30 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            37788999999999999999987443

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00057  Score=50.87  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=22.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      .|.|.|+.||||||.++.++..+...
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~~   29 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQL   29 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            47899999999999999999977433

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.67  E-value=0.00052  Score=48.58  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=19.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .++|.|++|+|||||++.+.+
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999886

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.66  E-value=0.00055  Score=49.52  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=18.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .++|.|++|+||||+|..+..
T Consensus        16 gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            499999999999999988775

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00018  Score=52.77  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      .+|+||||+||||++.+|.-.+..
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcC
Confidence            569999999999999999975543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.59  E-value=0.0007  Score=48.69  Aligned_cols=22  Identities=36%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             CeeEEECCCCCCHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ..++|.|++|+||||+.+.+.+
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3499999999999999998865

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.59  E-value=0.0007  Score=50.08  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      |.|.|+.||||||+++.+++.+..
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~   26 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRA   26 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            678999999999999999997743

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00068  Score=50.75  Aligned_cols=27  Identities=22%  Similarity=0.250  Sum_probs=23.3

Q ss_pred             CCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           32 QDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        32 ~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      |+...|.|.|+-||||||.++.++..|
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHH
Confidence            344568899999999999999999876

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.56  E-value=0.0063  Score=43.18  Aligned_cols=20  Identities=25%  Similarity=0.594  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|.+|+||||+++.+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.56  E-value=0.00069  Score=51.22  Aligned_cols=36  Identities=19%  Similarity=0.181  Sum_probs=25.9

Q ss_pred             HHHHHhhcCCCCe--eEEECCCCCCHHHHHHHHHHHHc
Q 025758           24 NLKKLVTEQDCPH--LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        24 ~l~~~~~~~~~~~--ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .|...+..|-.+.  ++|.|+||+|||+++.-+|..+.
T Consensus        22 ~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          22 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3444443333333  89999999999999999997653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.00069  Score=49.54  Aligned_cols=20  Identities=35%  Similarity=0.376  Sum_probs=18.1

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +.++|++||||||+|+.+..
T Consensus         6 IgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66999999999999999865

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.51  E-value=0.00058  Score=49.44  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=18.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .++|.||+|+||||+|..+..
T Consensus        17 gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            499999999999999987764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.0013  Score=49.51  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=24.8

Q ss_pred             HHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        22 ~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+.|..+++ +  ...+|.|++|+|||||+.++....
T Consensus        86 ~~~L~~~l~-~--kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          86 IEELKEYLK-G--KISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             HHHHHHHHS-S--SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             HhhHHHHhc-C--CeEEEECCCCCCHHHHHHhhcchh
Confidence            445555553 2  247899999999999999987643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.48  E-value=0.00065  Score=51.01  Aligned_cols=20  Identities=30%  Similarity=0.524  Sum_probs=17.6

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++|+|+||+|||+++.-++.
T Consensus        29 ~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          29 TLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999976654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.45  E-value=0.00076  Score=47.93  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+|||||++.+.+
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            389999999999999998865

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.45  E-value=0.00042  Score=54.23  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=19.5

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .|-|.++|++||||||+++.+...+.
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHh
Confidence            44588999999999999999998653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.40  E-value=0.00081  Score=48.29  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=18.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .++|.|++|+||||+|..+..
T Consensus        17 gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            499999999999999987775

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.39  E-value=0.001  Score=47.31  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=18.6

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++|.|++|+||||+++.+..
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999999876

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.38  E-value=0.001  Score=47.55  Aligned_cols=21  Identities=19%  Similarity=0.464  Sum_probs=19.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|++|+||||++..+.+.
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            899999999999999998863

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.001  Score=47.78  Aligned_cols=20  Identities=25%  Similarity=0.566  Sum_probs=18.7

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+|||++++.+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999999876

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.31  E-value=0.00077  Score=48.34  Aligned_cols=22  Identities=18%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             CeeEEECCCCCCHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ..+++.|.+|+||||++..+.+
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4499999999999999998875

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.30  E-value=0.00067  Score=49.06  Aligned_cols=20  Identities=40%  Similarity=0.620  Sum_probs=18.7

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      |+|.|+||+|||||..++.+
T Consensus         3 I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999975

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=96.29  E-value=0.0089  Score=46.41  Aligned_cols=18  Identities=6%  Similarity=0.340  Sum_probs=14.5

Q ss_pred             CCeeEEEEeCCCCCCHHH
Q 025758          129 RGFKVLVLNEVDKLSREA  146 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~  146 (248)
                      .+.+++++||++.++...
T Consensus        99 ~~~~~vViDE~H~~~~~~  116 (305)
T d2bmfa2          99 PNYNLIIMDEAHFTDPAS  116 (305)
T ss_dssp             CCCSEEEEESTTCCSHHH
T ss_pred             cceeEEEeeeeeecchhh
Confidence            357799999999987654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0013  Score=46.89  Aligned_cols=20  Identities=25%  Similarity=0.467  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|.+|+|||++++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999886

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0013  Score=46.83  Aligned_cols=21  Identities=24%  Similarity=0.518  Sum_probs=19.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|++|+|||++++.+.+.
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998863

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0013  Score=47.31  Aligned_cols=20  Identities=30%  Similarity=0.624  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+||||+++.+..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999999876

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0012  Score=50.07  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.7

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .|.|.|+-||||||+++.++..+.
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            389999999999999999999763

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00042  Score=52.47  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .|.|.|+-||||||+++.+++.+
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999865

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.0014  Score=46.91  Aligned_cols=21  Identities=24%  Similarity=0.575  Sum_probs=19.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+++.|++|+||||+++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            389999999999999999876

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0013  Score=47.63  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=18.4

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+||||+++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            88999999999999998874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.19  E-value=0.00075  Score=53.08  Aligned_cols=46  Identities=20%  Similarity=0.281  Sum_probs=38.5

Q ss_pred             CCCeeEEEEeCCC-CCCHHHHHHHHHHHHHhcCCeeEEEEecCCCcc
Q 025758          128 KRGFKVLVLNEVD-KLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (248)
Q Consensus       128 ~~~~~viiiDE~d-~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~~  173 (248)
                      ...+.+++||||+ .|+|..+..+.+.+++...+.-+|++||++.-+
T Consensus       239 ~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~  285 (308)
T d1e69a_         239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVM  285 (308)
T ss_dssp             TSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGG
T ss_pred             hccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH
Confidence            3466799999995 789999999999999888788899998886543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0013  Score=47.10  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=19.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|++|+||||+++.+...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999999863

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0016  Score=46.42  Aligned_cols=21  Identities=33%  Similarity=0.736  Sum_probs=19.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|++|+|||++++.+...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999863

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.16  E-value=0.0022  Score=50.05  Aligned_cols=37  Identities=8%  Similarity=0.207  Sum_probs=22.6

Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEec
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN  168 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~  168 (248)
                      ..++++++||+.-+++.....+..+..   ....++++..
T Consensus       205 ~~~~~i~vDE~QD~~~~~~~~l~~~~~---~~~~~~~~GD  241 (306)
T d1uaaa1         205 NKIRYLLVDEYQDTNTSQYELVKLLVG---SRARFTVVGD  241 (306)
T ss_dssp             TTCSEEEESCGGGCBHHHHHHHHHHHT---TTCCEEEECC
T ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhccc---CCCcceEeec
Confidence            367899999997677765555444433   2234555433

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.00067  Score=48.97  Aligned_cols=27  Identities=19%  Similarity=0.303  Sum_probs=22.0

Q ss_pred             hcCCCCeeEEECCCCCCHHHHHHHHHH
Q 025758           30 TEQDCPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        30 ~~~~~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      +..+.+.|.|.|++++|||||.+++.+
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhC
Confidence            344456699999999999999988854

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0017  Score=48.26  Aligned_cols=20  Identities=35%  Similarity=0.434  Sum_probs=18.1

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +.++|++||||||.++.+..
T Consensus         6 IgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHHHH
Confidence            56999999999999998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0017  Score=46.15  Aligned_cols=20  Identities=20%  Similarity=0.446  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++|.|.+|+|||++++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999886

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0018  Score=46.18  Aligned_cols=21  Identities=24%  Similarity=0.635  Sum_probs=19.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|.+|+|||++++.+...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999999863

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=96.08  E-value=0.0027  Score=55.72  Aligned_cols=57  Identities=12%  Similarity=0.200  Sum_probs=37.4

Q ss_pred             ccccCCCCCcccccccHH--HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758            3 WVDKYRPKTLDQVIVHQD--IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus         3 ~~~ky~p~~~~~lig~~~--~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      |+++|+.....++.-+--  +-.....+...++...|++.|.+|+|||+.++.+.+.|.
T Consensus        53 ~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          53 DIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             HHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            345565555555422222  223444555556666699999999999999999988663

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0015  Score=46.67  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++|.|.+|+|||++++.+..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999999876

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0011  Score=51.30  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHc
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+|+|++|+|||+++..+|..+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999987653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.002  Score=46.20  Aligned_cols=20  Identities=25%  Similarity=0.554  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+||||++..+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999988876

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.002  Score=45.61  Aligned_cols=20  Identities=20%  Similarity=0.378  Sum_probs=18.9

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+|||++++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999886

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0019  Score=46.13  Aligned_cols=20  Identities=25%  Similarity=0.732  Sum_probs=18.4

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|.+|+||||+++.+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998875

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.02  E-value=0.0018  Score=47.91  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=17.7

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +.++|+.||||||+++.+..
T Consensus         5 IgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56999999999999998864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.0021  Score=46.53  Aligned_cols=20  Identities=25%  Similarity=0.586  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|.+||||||++..+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998886

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.0014  Score=47.32  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=19.4

Q ss_pred             CeeEEECCCCCCHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      +.+.|.|.+|+||||+++.+.+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4588999999999999999865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0017  Score=46.17  Aligned_cols=20  Identities=35%  Similarity=0.670  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+|||+++..+.+
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999886

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.98  E-value=0.0017  Score=46.06  Aligned_cols=20  Identities=30%  Similarity=0.690  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|.+|+||||+++.+..
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999886

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.97  E-value=0.011  Score=48.33  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             CeeEEECCCCCCHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .+|.+.|.+|+||||+.+++.+
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3599999999999999999986

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.96  E-value=0.0015  Score=46.73  Aligned_cols=20  Identities=35%  Similarity=0.569  Sum_probs=18.2

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+||||+++.+.+
T Consensus        19 I~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            99999999999999987754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0018  Score=46.12  Aligned_cols=20  Identities=35%  Similarity=0.595  Sum_probs=18.4

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+|||++++.+.+
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999998875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0018  Score=45.98  Aligned_cols=20  Identities=20%  Similarity=0.433  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+|||++++.+..
T Consensus         7 v~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999999876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.0024  Score=45.41  Aligned_cols=20  Identities=20%  Similarity=0.554  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|.+|+||||+++.+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999886

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0019  Score=46.26  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=18.9

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|.+|+|||+|++.+..
T Consensus         9 v~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            99999999999999998876

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.91  E-value=0.039  Score=42.59  Aligned_cols=39  Identities=13%  Similarity=0.162  Sum_probs=27.7

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .+-..+.+..++.++   +.++.-|.|+|||.++-.++..+.
T Consensus       115 rdyQ~~av~~~l~~~---~~il~~pTGsGKT~i~~~i~~~~~  153 (282)
T d1rifa_         115 HWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYL  153 (282)
T ss_dssp             CHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcC---CceeEEEcccCccHHHHHHHHHhh
Confidence            344555666666543   467788999999999988886553

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.002  Score=46.11  Aligned_cols=20  Identities=30%  Similarity=0.657  Sum_probs=18.7

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|.+|+||||+++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.89  E-value=0.002  Score=50.79  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=16.2

Q ss_pred             eeEEECCCCCCHHHHHH-HHHH
Q 025758           36 HLLFYGPPGSGKKTLIM-ALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~-~ia~   56 (248)
                      ++++.|++||||||++- .++.
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~   47 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAY   47 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHH
Confidence            48899999999997654 3444

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.88  E-value=0.002  Score=46.47  Aligned_cols=20  Identities=35%  Similarity=0.655  Sum_probs=18.0

Q ss_pred             eeEEECCCCCCHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALL   55 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia   55 (248)
                      .+++.|++|+||||+++.+.
T Consensus        19 KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            49999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0021  Score=45.51  Aligned_cols=20  Identities=35%  Similarity=0.655  Sum_probs=18.6

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|.+|+|||++++.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999886

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0029  Score=45.71  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=19.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|.+|+|||++++.+...
T Consensus         8 ivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999998863

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0021  Score=46.10  Aligned_cols=21  Identities=38%  Similarity=0.599  Sum_probs=19.3

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .|+|.|.+|+|||||++++.+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            388999999999999999985

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0026  Score=45.15  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=19.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|.+|+|||++++.+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999998863

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0026  Score=45.67  Aligned_cols=20  Identities=30%  Similarity=0.667  Sum_probs=19.0

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|.+|+|||++++.+..
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999999886

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0021  Score=46.14  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=19.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|++|+|||+++..+...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0027  Score=45.23  Aligned_cols=20  Identities=25%  Similarity=0.571  Sum_probs=18.7

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+|||++++.+..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998876

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0026  Score=45.53  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=18.6

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++|.|.+|+|||++++.+.+
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.83  E-value=0.0019  Score=46.67  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.0

Q ss_pred             CeeEEECCCCCCHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      +.|.|.|++|+|||||++++.+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEE
T ss_pred             CeEEEECCCCCCHHHHHHHHhC
Confidence            3478999999999999998864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.0036  Score=44.61  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=19.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|.+|+|||++++.+...
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998863

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.81  E-value=0.025  Score=43.50  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=27.8

Q ss_pred             HHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        23 ~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.+...+.=++...++++|++|+|||+++..++...
T Consensus        57 raID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          57 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eeeeeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            344445555666679999999999999999998754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.003  Score=44.98  Aligned_cols=21  Identities=19%  Similarity=0.596  Sum_probs=19.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|.+|+|||+++..+...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.78  E-value=0.0043  Score=54.55  Aligned_cols=56  Identities=18%  Similarity=0.316  Sum_probs=36.3

Q ss_pred             cccCCCCCcccccccHH--HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758            4 VDKYRPKTLDQVIVHQD--IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~--~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +++|+.....++--+--  +-...+..+..++...|++.|.+|+|||+.++.+.+.+.
T Consensus        93 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2          93 VDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             HHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            34555555544422211  223444555556666699999999999999999988663

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.76  E-value=0.0029  Score=47.80  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.|+|+.||||||+|+.++..+
T Consensus         4 IgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999998754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.76  E-value=0.0024  Score=46.07  Aligned_cols=20  Identities=40%  Similarity=0.632  Sum_probs=18.7

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +.|.|.+|+||||++.++.+
T Consensus        11 V~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHC
Confidence            89999999999999999875

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.0023  Score=52.28  Aligned_cols=20  Identities=35%  Similarity=0.527  Sum_probs=18.1

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      -+|+||||+|||+++.+|+=
T Consensus        28 ~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999973

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.70  E-value=0.0015  Score=46.72  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             CeeEEECCCCCCHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      -.+++.|++|+||||+++.+..
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3499999999999999998763

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0027  Score=52.34  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=26.7

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecc
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~   70 (248)
                      .|+++.|++|+|||++++.+...+.......+-++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            469999999999999998777666655544444443

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.69  E-value=0.0027  Score=46.41  Aligned_cols=20  Identities=35%  Similarity=0.650  Sum_probs=18.8

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+||||+++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            89999999999999999886

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=95.68  E-value=0.006  Score=53.67  Aligned_cols=56  Identities=16%  Similarity=0.316  Sum_probs=36.6

Q ss_pred             cccCCCCCcccccccHH--HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758            4 VDKYRPKTLDQVIVHQD--IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~--~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      +++|+-+...++.-+--  +-......+..++...|++.|.+|+|||+.++.+.+.|.
T Consensus        59 ~~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          59 IDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             HHHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            34555555555422211  223444445556666699999999999999999988763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.0032  Score=45.37  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ++|.|.+|+|||++++.+...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988863

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=95.53  E-value=0.006  Score=53.89  Aligned_cols=55  Identities=15%  Similarity=0.294  Sum_probs=36.3

Q ss_pred             cccCCCCCcccccccHH--HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758            4 VDKYRPKTLDQVIVHQD--IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus         4 ~~ky~p~~~~~lig~~~--~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +++|+-+...++.-+--  +-......+..++...|++.|.+|+|||+.++.+.+.+
T Consensus        62 ~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          62 INAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44555555555422211  22344445555666679999999999999999998876

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.49  E-value=0.00098  Score=46.99  Aligned_cols=21  Identities=38%  Similarity=0.697  Sum_probs=19.5

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +.|.|.+|+||||+++++.+.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999875

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0036  Score=45.31  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|.+|+|||++++.+...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            899999999999999998763

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.0022  Score=45.91  Aligned_cols=21  Identities=29%  Similarity=0.594  Sum_probs=8.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|.+||||||+++.+.+.
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999887753

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.48  E-value=0.008  Score=46.16  Aligned_cols=41  Identities=17%  Similarity=0.226  Sum_probs=34.0

Q ss_pred             cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      |..+.+.+...+..+...+-||.|..|||||..+-..+...
T Consensus        88 Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~  128 (264)
T d1gm5a3          88 QKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN  128 (264)
T ss_dssp             HHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHH
Confidence            77777888888877777778999999999999998877544

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.47  E-value=0.0066  Score=46.72  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++|.|+||+|||+++.-++..+
T Consensus        38 ~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHhh
Confidence            8999999999999999998654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0037  Score=45.45  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=19.0

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|++|+|||++++.+...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988863

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0028  Score=47.57  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=21.1

Q ss_pred             CCCeeEEECCCCCCHHHHHHHHHH
Q 025758           33 DCPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        33 ~~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++|-.+++|.-|+||||+++.+..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHh
Confidence            456689999999999999998886

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0019  Score=46.17  Aligned_cols=20  Identities=35%  Similarity=0.609  Sum_probs=17.6

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|++|+|||+++..+..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.30  E-value=0.011  Score=41.64  Aligned_cols=45  Identities=9%  Similarity=0.153  Sum_probs=32.2

Q ss_pred             CCCeeEEEEeCCCC-CC--HHHHHHHHHHHHHhcCCeeEEEEecCCCc
Q 025758          128 KRGFKVLVLNEVDK-LS--REAQHSLRRTMEKYSASCRLILCCNSSSK  172 (248)
Q Consensus       128 ~~~~~viiiDE~d~-l~--~~~~~~ll~~le~~~~~~~~Il~t~~~~~  172 (248)
                      .+.++++||||+.. ++  --....++++++..+...-+|+|..+.+.
T Consensus        92 ~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~  139 (157)
T d1g5ta_          92 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR  139 (157)
T ss_dssp             CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred             cCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence            45789999999842 11  11245788888877778889999877653

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=95.29  E-value=0.009  Score=53.16  Aligned_cols=36  Identities=17%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             HHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        24 ~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .....+..++...|++.|.+|+|||+.++.+.+.|.
T Consensus       113 Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         113 AYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             HHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            445555566666799999999999999999988763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.21  E-value=0.0052  Score=44.67  Aligned_cols=20  Identities=30%  Similarity=0.539  Sum_probs=18.2

Q ss_pred             eeEEECCCCCCHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALL   55 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia   55 (248)
                      -+++.|.+|+||||+++.+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            38999999999999999993

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.0096  Score=46.22  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcC
Q 025758           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        21 ~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      ..+.+...++=++...+++.|++|+|||+++..++.....
T Consensus        30 ~~r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          30 TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             HHHHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             cceeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            3455666666677778999999999999999999986643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.11  E-value=0.47  Score=36.09  Aligned_cols=26  Identities=15%  Similarity=0.065  Sum_probs=21.8

Q ss_pred             CCCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           33 DCPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        33 ~~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++.++.+.|..|+|||||+.++....
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            34568999999999999999997543

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=95.10  E-value=0.0093  Score=53.04  Aligned_cols=55  Identities=22%  Similarity=0.310  Sum_probs=35.9

Q ss_pred             ccCCCCCcccccccHH--HHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHc
Q 025758            5 DKYRPKTLDQVIVHQD--IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus         5 ~ky~p~~~~~lig~~~--~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      ++|+.....++.-+--  +-......+..++...+++.|.+|+|||+.++.+.+.|.
T Consensus        90 ~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2          90 AKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             HHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4455444444422211  223445555566656699999999999999999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0071  Score=43.36  Aligned_cols=21  Identities=38%  Similarity=0.468  Sum_probs=19.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|++|+|||+++..+...
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999988863

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.07  E-value=0.022  Score=44.25  Aligned_cols=20  Identities=40%  Similarity=0.587  Sum_probs=18.3

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      -+|+||||+|||++..+++-
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            58999999999999999975

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.02  E-value=0.0018  Score=48.77  Aligned_cols=22  Identities=32%  Similarity=0.598  Sum_probs=18.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .+|.|++|+|||||+.++....
T Consensus       100 ~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2         100 TVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEECCCCccHHHHHHhhccHh
Confidence            6799999999999999998754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.92  E-value=0.0069  Score=45.17  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +++.|+.|+||||+++.+...-
T Consensus         9 illlG~~~vGKTsll~~~~~~~   30 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRILH   30 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999886543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.92  E-value=0.0065  Score=48.37  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=21.6

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHc
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~   59 (248)
                      .|.|-|+-|+||||+++.+++.+.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            489999999999999999998663

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.012  Score=45.56  Aligned_cols=25  Identities=28%  Similarity=0.402  Sum_probs=21.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      ++++|.=|+||||++-.+|..+...
T Consensus        11 i~~sGKGGVGKTTvaa~lA~~lA~~   35 (296)
T d1ihua1          11 LFFTGKGGVGKTSISCATAIRLAEQ   35 (296)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHHHHC
Confidence            8899999999999999999876443

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.67  E-value=0.05  Score=37.32  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=18.2

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      =+++||=.+||||-+...+...
T Consensus        10 ~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1          10 EVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeccccHHHHHHHHHHHHh
Confidence            4689999999999888777654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=94.46  E-value=0.11  Score=35.46  Aligned_cols=36  Identities=14%  Similarity=0.176  Sum_probs=23.3

Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC  167 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t  167 (248)
                      ..+.+|+|||++.++. ....+.+.+...  +..+|+..
T Consensus        78 ~~~dvI~IDE~QFf~d-~i~~~~~~~~~~--g~~Viv~G  113 (139)
T d2b8ta1          78 DETKVIGIDEVQFFDD-RICEVANILAEN--GFVVIISG  113 (139)
T ss_dssp             TTCCEEEECSGGGSCT-HHHHHHHHHHHT--TCEEEEEC
T ss_pred             cCcCEEEechhhhcch-hHHHHHHHHHhc--CceEEEEE
Confidence            3678999999998873 345555665532  33455553

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.39  E-value=0.011  Score=42.78  Aligned_cols=21  Identities=38%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|..|+|||++++.+...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.30  E-value=0.025  Score=37.61  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=21.7

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~   60 (248)
                      ++|.|-+|+||+|+|+++...++.
T Consensus         9 i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           9 IVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             EEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            899999999999999999887754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.27  E-value=0.029  Score=42.86  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      ++++|.=|+||||++-.+|..+...
T Consensus        23 ii~sGKGGVGKTT~a~nLA~~lA~~   47 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAIAVRLADM   47 (279)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            8899999999999999999877544

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.22  E-value=0.0074  Score=47.88  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.1

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      |.|-|+-|+||||+++.+++.+
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEECCcCCCHHHHHHHHHHHh
Confidence            7899999999999999999755

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.11  E-value=0.72  Score=36.18  Aligned_cols=40  Identities=10%  Similarity=0.262  Sum_probs=29.0

Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~  171 (248)
                      .+..++++|=+++........+....++.   .+.|++-|..+
T Consensus       120 ~D~allVVda~eGv~~qT~~~~~~a~~~~---~p~i~viNKiD  159 (341)
T d1n0ua2         120 TDGALVVVDTIEGVCVQTETVLRQALGER---IKPVVVINKVD  159 (341)
T ss_dssp             CSEEEEEEETTTBSCHHHHHHHHHHHHTT---CEEEEEEECHH
T ss_pred             cCceEEEEecccCcchhHHHHHHHHHHcC---CCeEEEEECcc
Confidence            47789999999999888888777776642   44555556654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.04  E-value=0.0072  Score=48.04  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=20.6

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      |.|-|+-|+||||+++.++..+
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999865

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.95  E-value=0.016  Score=41.60  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +++.|..|+|||++++.+...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            899999999999999988753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.86  E-value=0.2  Score=36.19  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.+.|..++|||||+..+.+.+
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            8899999999999999998644

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.36  E-value=0.018  Score=41.18  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++-+.|.+++|||||+.++.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            478999999999999999975

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.33  E-value=0.034  Score=41.36  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=21.2

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHHH
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .|-+.+.|.+++|||||+.++.+.-
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhc
Confidence            3458899999999999999998754

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.32  E-value=0.024  Score=41.48  Aligned_cols=27  Identities=26%  Similarity=0.333  Sum_probs=22.5

Q ss_pred             eeEEECCC-CCCHHHHHHHHHHHHcCCC
Q 025758           36 HLLFYGPP-GSGKKTLIMALLRQVFGPG   62 (248)
Q Consensus        36 ~ill~Gp~-G~GKTtla~~ia~~l~~~~   62 (248)
                      .++++|.. |+||||++-.+|..+...+
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G   30 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAG   30 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCC
Confidence            47899995 9999999999999775544

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.26  E-value=0.96  Score=32.48  Aligned_cols=22  Identities=32%  Similarity=0.231  Sum_probs=19.3

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      +.+.|..++|||||+..+....
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHh
Confidence            8899999999999999987543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.10  E-value=0.054  Score=43.69  Aligned_cols=42  Identities=14%  Similarity=0.203  Sum_probs=34.1

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHh-cCCeeEEEEecCCC
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNSSS  171 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~-~~~~~~Il~t~~~~  171 (248)
                      ..++++|||| ..||+.....+.+.|.+. ..+.-+|+|||++.
T Consensus       354 ~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~  397 (427)
T d1w1wa_         354 PSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT  397 (427)
T ss_dssp             CCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            4459999999 579999999999999776 34567999998864

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=92.90  E-value=0.047  Score=43.34  Aligned_cols=41  Identities=24%  Similarity=0.450  Sum_probs=28.9

Q ss_pred             Ccccccc----cHHHHHHHHHHhh---cCCCCeeEEECCCCCCHHHHH
Q 025758           11 TLDQVIV----HQDIAQNLKKLVT---EQDCPHLLFYGPPGSGKKTLI   51 (248)
Q Consensus        11 ~~~~lig----~~~~~~~l~~~~~---~~~~~~ill~Gp~G~GKTtla   51 (248)
                      +|+.+++    |+++.+.+...+.   +|....++-+|..|+|||.++
T Consensus        53 ~FD~vf~~~~~q~~vy~~v~~~v~~~l~G~n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          53 KFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             EESEEECTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred             ecCeEeCCCCCHHHHHHHhhhhhcchhcccccceeeeeccCCcccccc
Confidence            3666665    6666665554443   455445899999999999987

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.61  E-value=0.019  Score=44.97  Aligned_cols=16  Identities=44%  Similarity=0.823  Sum_probs=14.3

Q ss_pred             eEEECCCCCCHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIM   52 (248)
Q Consensus        37 ill~Gp~G~GKTtla~   52 (248)
                      .+|+|.+|||||||..
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            7899999999999763

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.23  Score=33.43  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=17.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      -+++||=.+||||-+...+...
T Consensus         5 ~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           5 QVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEecccCHHHHHHHHHHHHH
Confidence            3688999999999887777654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.44  E-value=0.025  Score=44.10  Aligned_cols=15  Identities=47%  Similarity=0.891  Sum_probs=13.8

Q ss_pred             eEEECCCCCCHHHHH
Q 025758           37 LLFYGPPGSGKKTLI   51 (248)
Q Consensus        37 ill~Gp~G~GKTtla   51 (248)
                      -+|+|.+|||||||.
T Consensus        17 alfFGLSGTGKTTLs   31 (313)
T d2olra1          17 AVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            689999999999976

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=92.07  E-value=0.033  Score=44.70  Aligned_cols=41  Identities=32%  Similarity=0.455  Sum_probs=27.0

Q ss_pred             Ccccccc----cHHHHHHHHHHh---hcCCCCeeEEECCCCCCHHHHH
Q 025758           11 TLDQVIV----HQDIAQNLKKLV---TEQDCPHLLFYGPPGSGKKTLI   51 (248)
Q Consensus        11 ~~~~lig----~~~~~~~l~~~~---~~~~~~~ill~Gp~G~GKTtla   51 (248)
                      +|+.+++    |.++.+.+...+   -+|....++-+|+.|||||.++
T Consensus        45 ~FD~vf~~~~~q~~vy~~v~~lv~~~l~G~n~~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          45 MYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             ECSEEECTTCCHHHHHHTTTHHHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred             ECCeecCCCCCHHHHHHHHHHHHHHHhcCCceeeeccccCCCCccccc
Confidence            3566654    555555443333   2455445999999999999996

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.033  Score=42.91  Aligned_cols=40  Identities=18%  Similarity=0.205  Sum_probs=30.4

Q ss_pred             ccccHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHH
Q 025758           15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        15 lig~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      +.-.+++++.|+..  .+++.-|.+.||.++|||+++..+++
T Consensus        15 l~~~~e~l~~l~~~--~~~v~vvsi~G~~~sGKS~llN~l~~   54 (277)
T d1f5na2          15 LMANPEALKILSAI--TQPMVVVAIVGLYRTGKSYLMNKLAG   54 (277)
T ss_dssp             EEECHHHHHHHHTC--CSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred             EEECHHHHHHHHcC--CCCEEEEEEECCCCCCHHHHHHHHcC
Confidence            45577787777664  33344489999999999999998876

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.81  E-value=0.034  Score=43.57  Aligned_cols=15  Identities=47%  Similarity=0.888  Sum_probs=14.1

Q ss_pred             eEEECCCCCCHHHHH
Q 025758           37 LLFYGPPGSGKKTLI   51 (248)
Q Consensus        37 ill~Gp~G~GKTtla   51 (248)
                      .+|+|-+|||||||.
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            689999999999998

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.01  E-value=0.05  Score=43.68  Aligned_cols=41  Identities=29%  Similarity=0.454  Sum_probs=26.6

Q ss_pred             Ccccccc----cHHHHHHHHHHh---hcCCCCeeEEECCCCCCHHHHH
Q 025758           11 TLDQVIV----HQDIAQNLKKLV---TEQDCPHLLFYGPPGSGKKTLI   51 (248)
Q Consensus        11 ~~~~lig----~~~~~~~l~~~~---~~~~~~~ill~Gp~G~GKTtla   51 (248)
                      +|+.+++    |.++.+.+...+   -+|....++-+|+.|||||.++
T Consensus        95 ~FD~vf~~~~~Q~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm  142 (368)
T d2ncda_          95 SFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTM  142 (368)
T ss_dssp             ECSEEECTTCCHHHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred             ECCeEECCCCCccchHHHHHHHHHHHhcccceeEEeeccCCCccceEe
Confidence            3566654    555544333322   2455555999999999999885

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.88  E-value=0.072  Score=39.63  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=20.1

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      .+++.+|+|+|||+++...+-.+..+
T Consensus        60 ~~~i~apTGsGKT~~~~~~~~~~~~~   85 (237)
T d1gkub1          60 SFAATAPTGVGKTSFGLAMSLFLALK   85 (237)
T ss_dssp             CEECCCCBTSCSHHHHHHHHHHHHTT
T ss_pred             CEEEEecCCChHHHHHHHHHHHHHHh
Confidence            58899999999999887776544333

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.87  E-value=0.094  Score=39.70  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=21.5

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      |.++|.=|+||||++-.+|..+...
T Consensus         4 Iai~gKGGvGKTT~a~nLA~~LA~~   28 (269)
T d1cp2a_           4 VAIYGKGGIGKSTTTQNLTSGLHAM   28 (269)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHhC
Confidence            5678999999999999999977554

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=0.098  Score=41.03  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=27.0

Q ss_pred             Ccccccc----cHHHHHHH----HHHhhcCCCCeeEEECCCCCCHHHHH
Q 025758           11 TLDQVIV----HQDIAQNL----KKLVTEQDCPHLLFYGPPGSGKKTLI   51 (248)
Q Consensus        11 ~~~~lig----~~~~~~~l----~~~~~~~~~~~ill~Gp~G~GKTtla   51 (248)
                      +|+.+++    |.++.+.+    ...+-+|....++-+|+.|||||.++
T Consensus        45 ~FD~vf~~~~~q~~vf~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          45 AFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             ECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred             ECCEEECCCCCHHHHHHHHHHHHHHHHHcCCCcceeeecccCCCCceec
Confidence            4666665    44544432    22223566556999999999999997

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.50  E-value=0.068  Score=42.15  Aligned_cols=40  Identities=25%  Similarity=0.355  Sum_probs=26.8

Q ss_pred             cccccc----cHHHHHH-----HHHHhhcCCCCeeEEECCCCCCHHHHH
Q 025758           12 LDQVIV----HQDIAQN-----LKKLVTEQDCPHLLFYGPPGSGKKTLI   51 (248)
Q Consensus        12 ~~~lig----~~~~~~~-----l~~~~~~~~~~~ill~Gp~G~GKTtla   51 (248)
                      |+.+++    |.++.+.     +...+.+|....++-+|..|||||.++
T Consensus        54 fD~Vf~~~~~q~~vy~~~~~plv~~~~~~G~n~~i~aYGqTGSGKTyTm  102 (330)
T d1ry6a_          54 VDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM  102 (330)
T ss_dssp             CSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred             CCeecCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEeeeccccccceee
Confidence            455554    5555543     223344566556999999999999997

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.48  E-value=0.057  Score=41.28  Aligned_cols=22  Identities=45%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             CeeEEECCCCCCHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      .++.+.|+.|+|||||+.++..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Confidence            3588999999999999999975

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.99  E-value=0.11  Score=38.09  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=20.0

Q ss_pred             EEECCCCCCHHHHHHHHHHHHcCC
Q 025758           38 LFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        38 ll~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      +..|.-|+||||++..+|..+...
T Consensus         6 v~s~KGGvGKTtia~nlA~~la~~   29 (232)
T d1hyqa_           6 VASGKGGTGKTTITANLGVALAQL   29 (232)
T ss_dssp             EEESSSCSCHHHHHHHHHHHHHHT
T ss_pred             EECCCCCChHHHHHHHHHHHHHhC
Confidence            456899999999999999877543

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=89.35  E-value=0.15  Score=40.51  Aligned_cols=41  Identities=29%  Similarity=0.369  Sum_probs=26.5

Q ss_pred             Ccccccc----cHHHHHHH-HHHh---hcCCCCeeEEECCCCCCHHHHH
Q 025758           11 TLDQVIV----HQDIAQNL-KKLV---TEQDCPHLLFYGPPGSGKKTLI   51 (248)
Q Consensus        11 ~~~~lig----~~~~~~~l-~~~~---~~~~~~~ill~Gp~G~GKTtla   51 (248)
                      +|+.+++    |+++.+.+ ...+   -+|....++-+|+.|+|||.++
T Consensus        49 ~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          49 TFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             ECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred             ECCeEcCCCCCHHHHHHHHHHHHHHHhhccCceeEEecccCCCCcceee
Confidence            3555654    55555432 2222   3555555999999999999886

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.34  E-value=0.14  Score=39.31  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=24.8

Q ss_pred             HHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHH
Q 025758           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        24 ~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      .+...+.=++...++++|++|+|||+++..++..
T Consensus        58 aID~l~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          58 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEecccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            3444444455566889999999999998877753

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=89.33  E-value=0.21  Score=33.85  Aligned_cols=73  Identities=11%  Similarity=0.122  Sum_probs=48.0

Q ss_pred             CCeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC--cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH
Q 025758          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK  204 (248)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~--~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~  204 (248)
                      ..++++++|=- ..++   .-.+++.+.+...++++|++|.+..  ....++..-+.-+-..|.+.+++...+.+.+.+
T Consensus        43 ~~~dlil~D~~mP~~~---G~el~~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~  118 (140)
T d1qkka_          43 DFAGIVISDIRMPGMD---GLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK  118 (140)
T ss_dssp             TCCSEEEEESCCSSSC---HHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred             cCcchHHHhhccCCCC---HHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCCEeecCCCCHHHHHHHHHHHHHH
Confidence            46789999942 2333   2335555555555677888876554  455566655566777889999998888776654

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.28  E-value=0.11  Score=39.72  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=20.9

Q ss_pred             eEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      |.++|.=|+||||++-.+|..+...
T Consensus         5 IaisgKGGVGKTT~a~NLA~~LA~~   29 (289)
T d2afhe1           5 CAIYGKGGIGKSTTTQNLVAALAEM   29 (289)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            5578999999999999999877544

>d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.92  E-value=2.1  Score=28.35  Aligned_cols=123  Identities=15%  Similarity=0.042  Sum_probs=72.0

Q ss_pred             HHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCCCcccceecccceeeccCCcccccceeeecccceeeeCCCCcCc
Q 025758           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF  104 (248)
Q Consensus        25 l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (248)
                      |...++.+-.+-++|+|+.--=+......+-..+..++....                            ..... +...
T Consensus         9 L~~~l~k~l~~vyll~G~E~~L~~~~~~~i~~~~~~~~~~~~----------------------------~~~~~-~~~~   59 (140)
T d1jqlb_           9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEH----------------------------HTFSI-DPNT   59 (140)
T ss_dssp             HHHHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEE----------------------------ECCCC-STTC
T ss_pred             HHHHHhcCCCcEEEEEcChHHHHHHHHHHHHHHHHhCCccee----------------------------eeecc-cccC
Confidence            444555553344999999887777777777665533221110                            00111 1111


Q ss_pred             chhHHHHHHHHHHHhcCCCcCCCCCCeeEEEEeCCC-CCCHHHHHHHHHHHHHhcCCeeEEEEecCCC------cccHHH
Q 025758          105 QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVD-KLSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEAI  177 (248)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDE~d-~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~------~~~~~l  177 (248)
                          ...+.+..+.. .|.    -++.++++|.+++ ..+......|.+.++.++..+.+|+++....      ....++
T Consensus        60 ----~~~~l~~~~~t-~sl----F~~krli~i~~~~~~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k~~~~~k~~K~l  130 (140)
T d1jqlb_          60 ----DWNAIFSLCQA-MSL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTAL  130 (140)
T ss_dssp             ----CHHHHHHHHHC-CCT----TCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHH
T ss_pred             ----CHHHHHHHHcC-CCc----ccCcEEEEEEcCCCCCcHHHHHHHHHHHhCCCCCEEEEEEcCCCCchhhhhHHHHHH
Confidence                13333443332 222    3477899999984 5567777889999999888888888876543      234455


Q ss_pred             hhhhheee
Q 025758          178 RSRCLNIR  185 (248)
Q Consensus       178 ~sR~~~i~  185 (248)
                      ..+..+|.
T Consensus       131 ~k~g~vI~  138 (140)
T d1jqlb_         131 ANRSVQVT  138 (140)
T ss_dssp             GGGCEEEE
T ss_pred             HhCCeEEe
Confidence            55554443

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=88.41  E-value=0.45  Score=38.48  Aligned_cols=45  Identities=22%  Similarity=0.254  Sum_probs=35.5

Q ss_pred             cc-cHHHHHHHHHHhhcCCCCeeEEECCCCCCHHHHHHHHHHHHcCC
Q 025758           16 IV-HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        16 ig-~~~~~~~l~~~~~~~~~~~ill~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      -| |+++++.|...+..|. .+.+|.|-+|||||.++-.++.....+
T Consensus        13 ~gDQP~aI~~l~~~l~~g~-~~q~l~GltGS~ka~~iA~l~~~~~rp   58 (413)
T d1t5la1          13 QGDQPQAIAKLVDGLRRGV-KHQTLLGATGTGKTFTISNVIAQVNKP   58 (413)
T ss_dssp             CTTHHHHHHHHHHHHHHTC-SEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHhcCC-CcEEEeCCCCcHHHHHHHHHHHHhCCC
Confidence            45 7788888888887653 457799999999999998888876443

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=88.29  E-value=0.17  Score=39.92  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=26.3

Q ss_pred             cccccc----cHHHHHHH-H---HHhhcCCCCeeEEECCCCCCHHHHH
Q 025758           12 LDQVIV----HQDIAQNL-K---KLVTEQDCPHLLFYGPPGSGKKTLI   51 (248)
Q Consensus        12 ~~~lig----~~~~~~~l-~---~~~~~~~~~~ill~Gp~G~GKTtla   51 (248)
                      |+.+++    |+++.+.+ .   ..+-.|....++-+|+.|||||.++
T Consensus        51 FD~vf~~~~~q~~vy~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyTm   98 (345)
T d1x88a1          51 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM   98 (345)
T ss_dssp             CSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred             cCEEeCCCCCHHHHHHHHHHHhHHHHhccCCceEEeeeeccccceEEe
Confidence            556655    55555432 2   2233565556999999999999886

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=88.25  E-value=0.2  Score=39.67  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=18.3

Q ss_pred             hcCCCCeeEEECCCCCCHHHHH
Q 025758           30 TEQDCPHLLFYGPPGSGKKTLI   51 (248)
Q Consensus        30 ~~~~~~~ill~Gp~G~GKTtla   51 (248)
                      -+|....++-+|+.|+|||.++
T Consensus        83 l~G~n~ti~aYGqTgSGKT~Tm  104 (349)
T d2zfia1          83 FEGYNVCIFAYGQTGAGKSYTM  104 (349)
T ss_dssp             HTTCCEEEEEECSTTSSHHHHH
T ss_pred             HhccCceeeeeccCCCCCceee
Confidence            3565556999999999999997

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.10  E-value=1.3  Score=28.69  Aligned_cols=73  Identities=10%  Similarity=0.101  Sum_probs=47.1

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC--cccHHHhhhhheeeecCCCHHHHHHHHHHHHHHc
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE  205 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~--~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~  205 (248)
                      .+.++++|-- ..++   .-.+++.+.+...+.++|++|....  ....++..-+.-+-..|++.+++...+++.+.+.
T Consensus        45 ~~dlvl~D~~mP~~~---G~el~~~ir~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~rr  120 (121)
T d1ys7a2          45 RPDAIVLDINMPVLD---GVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR  120 (121)
T ss_dssp             CCSEEEEESSCSSSC---HHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeeccCcc---cHHHHHHHHhcCCCCEEEEEEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence            5679999963 3333   2334455555445567777765543  3444554445667778899999999998887664

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=87.99  E-value=1  Score=29.10  Aligned_cols=70  Identities=13%  Similarity=0.264  Sum_probs=44.1

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC--cccHHHhhhhheeeecCCCHHHHHHHHHHH
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFI  201 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~--~~~~~l~sR~~~i~~~~~~~~~~~~il~~~  201 (248)
                      .++++++|=  .|+....-.+++.+.+...++++|++|.+..  ....++..-+.-+-..|.+.+++.+.++++
T Consensus        46 ~~dliilD~--~mp~~~G~e~~~~ir~~~~~~pvi~ls~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~v  117 (118)
T d1u0sy_          46 KPDIVTMDI--TMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV  117 (118)
T ss_dssp             CCSEEEEEC--SCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred             cCCEEEEec--CCCCCCHHHHHHHHHHhCCCCcEEEEEccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence            467999993  2322233345555555556677777776654  344455555566677889999998888754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.94  E-value=0.14  Score=39.66  Aligned_cols=24  Identities=21%  Similarity=0.544  Sum_probs=21.7

Q ss_pred             CCeeEEECCCCCCHHHHHHHHHHH
Q 025758           34 CPHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        34 ~~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      +|.+++.|.-++||||++.++.+.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCC
Confidence            566999999999999999999973

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=87.77  E-value=0.29  Score=37.13  Aligned_cols=20  Identities=45%  Similarity=0.620  Sum_probs=19.1

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +++.|-|.+||||++.++.+
T Consensus       115 v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         115 ALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEecCccchhhhhhhhhc
Confidence            89999999999999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.55  E-value=0.14  Score=39.46  Aligned_cols=25  Identities=20%  Similarity=0.493  Sum_probs=22.1

Q ss_pred             CCCeeEEECCCCCCHHHHHHHHHHH
Q 025758           33 DCPHLLFYGPPGSGKKTLIMALLRQ   57 (248)
Q Consensus        33 ~~~~ill~Gp~G~GKTtla~~ia~~   57 (248)
                      ..|.++++|.-++||||++.++.+.
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCC
Confidence            4566999999999999999999973

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.28  E-value=0.19  Score=36.77  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=18.9

Q ss_pred             EECCCCCCHHHHHHHHHHHHcCC
Q 025758           39 FYGPPGSGKKTLIMALLRQVFGP   61 (248)
Q Consensus        39 l~Gp~G~GKTtla~~ia~~l~~~   61 (248)
                      ..+.-|+||||++..+|..+...
T Consensus         8 ~~~kGGvGKTtia~nLA~~la~~   30 (237)
T d1g3qa_           8 VSGKGGTGKTTVTANLSVALGDR   30 (237)
T ss_dssp             ECSSTTSSHHHHHHHHHHHHHHT
T ss_pred             ECCCCCCcHHHHHHHHHHHHHhC
Confidence            44778999999999999977543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.89  E-value=0.14  Score=39.11  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=19.9

Q ss_pred             CCCCeeEEECCCCCCHHHHHHHHHH
Q 025758           32 QDCPHLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        32 ~~~~~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++...++++|++|+|||+++..++.
T Consensus        65 g~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          65 GRGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             BTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             cCCceEeeccCCCCChHHHHHHHHh
Confidence            3445588999999999999987654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=86.83  E-value=0.21  Score=38.52  Aligned_cols=20  Identities=30%  Similarity=0.429  Sum_probs=19.1

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +-|.|.|.+||||+..++.+
T Consensus        13 iGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1          13 TGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             EEEEECSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHC
Confidence            78999999999999999996

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.59  E-value=0.62  Score=30.48  Aligned_cols=74  Identities=11%  Similarity=0.087  Sum_probs=44.9

Q ss_pred             CCeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCc--ccHHHhhhhheeeecCCCHHHHHHHHHHHHHH
Q 025758          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK--VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK  204 (248)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~--~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~  204 (248)
                      ..+.++++|--  |+....-.+++.+.+...+.++|++|.....  ...++..-+.-+-..|.+.+++...+.+.+.+
T Consensus        46 ~~~dlii~D~~--mp~~~G~el~~~l~~~~~~~piI~~t~~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~l~~  121 (123)
T d1krwa_          46 KTPDVLLSDIR--MPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH  121 (123)
T ss_dssp             CCCSEEEECCS--SSSSTTHHHHHHHHHHSSSCCEEESCCCSCHHHHHHHHHHTEEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEehhh--cCCchHHHHHHHHHHhCCCCeEEEEecCCCHHHHHHHHHcCCCeEEeCcCCHHHHHHHHHHHHHc
Confidence            36789999942  2212222345555444556778888777653  33344333445666788888988888876654

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=86.45  E-value=0.17  Score=40.32  Aligned_cols=41  Identities=20%  Similarity=0.291  Sum_probs=26.5

Q ss_pred             Ccccccc----cHHHHHHH-H---HHhhcCCCCeeEEECCCCCCHHHHH
Q 025758           11 TLDQVIV----HQDIAQNL-K---KLVTEQDCPHLLFYGPPGSGKKTLI   51 (248)
Q Consensus        11 ~~~~lig----~~~~~~~l-~---~~~~~~~~~~ill~Gp~G~GKTtla   51 (248)
                      +|+.+++    |+++.+.+ .   ..+-+|....++-+|..|||||.++
T Consensus        83 ~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm  131 (362)
T d1v8ka_          83 CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM  131 (362)
T ss_dssp             ECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred             eCCeecCCCCCHHHHHHHHHHHHHHHHHhccCceEEeeccCCCCCceee
Confidence            3566665    55555432 2   2223555555999999999999986

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=85.93  E-value=0.18  Score=36.30  Aligned_cols=20  Identities=25%  Similarity=0.238  Sum_probs=16.7

Q ss_pred             eeEEECCCCCCHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALL   55 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia   55 (248)
                      ++++.-|+|+|||..+....
T Consensus        42 ~vlv~apTGsGKT~~~~~~~   61 (206)
T d1oywa2          42 DCLVVMPTGGGKSLCYQIPA   61 (206)
T ss_dssp             CEEEECSCHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCcchhhhhh
Confidence            68999999999998875554

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=85.48  E-value=0.35  Score=34.86  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=19.0

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++.+.|...+|||||+..|.+
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEEEccCCcHHHHHHHHHh
Confidence            389999999999999999975

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=85.41  E-value=0.25  Score=35.29  Aligned_cols=21  Identities=33%  Similarity=0.354  Sum_probs=18.9

Q ss_pred             eeEEECCCCCCHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++.+.|..++|||||+.++.+
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            378999999999999999975

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=84.66  E-value=0.28  Score=36.11  Aligned_cols=24  Identities=38%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Q 025758           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        35 ~~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      .++++.|...+|||||+..+....
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHc
Confidence            348999999999999999997643

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.49  E-value=1.6  Score=28.89  Aligned_cols=73  Identities=14%  Similarity=0.193  Sum_probs=45.1

Q ss_pred             CeeEEEEeCCCCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC--cccHHHhhhhheeeecCCCHHHHHHHHHHHHHH
Q 025758          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK  204 (248)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~--~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~  204 (248)
                      .+.++++|--  |+....-.+++.+.+...++++|++|.+..  ....++..=+.-+-..|.+.+++...+.+.+..
T Consensus        44 ~~dlvilD~~--mp~~~G~e~~~~lr~~~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~  118 (137)
T d1ny5a1          44 HFNVVLLDLL--LPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEH  118 (137)
T ss_dssp             CCSEEEEESB--CSSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHH
T ss_pred             ccccchHHHh--hhhhhHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence            5679999953  222222345555655555677777776543  344445444455666788999998888766543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=84.31  E-value=0.34  Score=36.82  Aligned_cols=20  Identities=40%  Similarity=0.473  Sum_probs=18.7

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +-|.|-|.+||||+..++.+
T Consensus         5 ~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           5 CGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHC
Confidence            67999999999999999996

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.07  E-value=0.3  Score=34.74  Aligned_cols=20  Identities=35%  Similarity=0.413  Sum_probs=17.5

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      ++++|+..||||..|..++.
T Consensus         2 iLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHHh
Confidence            58999999999999987763

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=83.81  E-value=2.2  Score=27.62  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=46.5

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC--cccHHHhhhhheeeecCCCHHHHHHHHHHHH
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIA  202 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~--~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~  202 (248)
                      .+.++++|-- ..++   .-.+++.+.+....+++|++|.+..  ....+++.-+.-+-..|.+.+++...+.+.+
T Consensus        47 ~~dlvi~D~~mp~~~---G~e~~~~lr~~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~a~  119 (123)
T d1dbwa_          47 RNGVLVTDLRMPDMS---GVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERAS  119 (123)
T ss_dssp             CSEEEEEECCSTTSC---HHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred             CCcEEEEeccCcccc---chHHHHHHHhcCCCCeEEEEEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence            5789999963 3333   2345555665555677788877664  3444555555666678899999998888654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.62  E-value=0.27  Score=38.15  Aligned_cols=20  Identities=30%  Similarity=0.370  Sum_probs=18.2

Q ss_pred             eEEECCCCCCHHHHHHHHHH
Q 025758           37 LLFYGPPGSGKKTLIMALLR   56 (248)
Q Consensus        37 ill~Gp~G~GKTtla~~ia~   56 (248)
                      +-|.|.|.+||||+..++.+
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            56999999999999999976

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=83.55  E-value=3.2  Score=26.65  Aligned_cols=73  Identities=16%  Similarity=0.194  Sum_probs=48.3

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCC--cccHHHhhhhheeeecCCCHHHHHHHHHHHHHHc
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE  205 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~--~~~~~l~sR~~~i~~~~~~~~~~~~il~~~~~~~  205 (248)
                      .++++|+|=- ..++.   -.+++.+.+.....++|++|....  ....++..=+.-+-..|++.+++...+.+.+.++
T Consensus        43 ~~dlillD~~mP~~~G---~~~~~~lr~~~~~~~ii~it~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~  118 (120)
T d1p2fa2          43 AFHVVVLDVMLPDYSG---YEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE  118 (120)
T ss_dssp             CCSEEEEESBCSSSBH---HHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCcccccch---hHHHHHHhhcCCCCcEEEEecCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHc
Confidence            5789999953 33332   345556665556677777776654  3444444444667778999999999998877653

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.73  E-value=0.34  Score=35.51  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=19.4

Q ss_pred             eeEEECCCCCCHHHHHHHHHHHH
Q 025758           36 HLLFYGPPGSGKKTLIMALLRQV   58 (248)
Q Consensus        36 ~ill~Gp~G~GKTtla~~ia~~l   58 (248)
                      ++.+.|.-++|||||+..+....
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~~~   27 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLMDR   27 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHHHc
Confidence            38999999999999998886433

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=81.03  E-value=4.1  Score=26.04  Aligned_cols=70  Identities=10%  Similarity=0.088  Sum_probs=45.3

Q ss_pred             CeeEEEEeCC-CCCCHHHHHHHHHHHHHhcCCeeEEEEecCCCc--ccHHHhhhhheeeecCCCHHHHHHHHHHHH
Q 025758          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK--VTEAIRSRCLNIRINSPTEEQIVKVLEFIA  202 (248)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~ll~~le~~~~~~~~Il~t~~~~~--~~~~l~sR~~~i~~~~~~~~~~~~il~~~~  202 (248)
                      .+.++++|=- ..++   .-.+++.+.+...+.++|++|.+...  ...++..-+.-+-..|.+.+++...+++.+
T Consensus        45 ~~dlillD~~mP~~~---G~el~~~lr~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~L  117 (119)
T d1peya_          45 RPDLVLLDMKIPGMD---GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL  117 (119)
T ss_dssp             CCSEEEEESCCTTCC---HHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHS
T ss_pred             CCCEEEEeccCCCCC---HHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
Confidence            4569999953 4444   23455556555567788888776542  334444444566678999999998887653