Citrus Sinensis ID: 025760

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MTKEFSVPPVVFPSGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHcccEEccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHcccccccHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mtkefsvppvvfpsggnpttagninqrrvptapfqpnrpassaipfmsfdigsatpasyggpiststsaggsasfddeeplldelgihpdqIWKKTKsilnpfrvnptvhkgsdlsgpIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLagrngnldlhtctsvvgycMLPVVILAAFSlflpqggaIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF
Flexible Loop (DISEMBL)
mtkefsvppvvfpsggnpttagninqRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF
Low Complexity Region (SEG)
MTKEFSVPPVVFPSGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPIststsaggsasFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF
Disordered region (IsUnstruct)
**********************************************************************************DELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVI*
Disordered Region (DISOPRED)
*****S*************************************************************************PLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF
Disordered Region (DISEMBL)
MTKEFSVPPVVFPSGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPIS**********FDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF
Disordered Region (DISPRO)
****FSVPPVVFP**GNP*T**NINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKEFSVPPVVFPSGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q9JIM5	254	Protein YIPF7 OS=Mus musc	yes	no	0.923	0.901	0.338	1e-30
Q8N8F6	280	Protein YIPF7 OS=Homo sap	yes	no	0.923	0.817	0.347	2e-29
Q7SXS2	256	Protein YIPF5 OS=Xenopus	N/A	no	0.814	0.789	0.324	2e-28
Q66KA5	256	Protein YIPF5 OS=Xenopus	yes	no	0.729	0.707	0.354	4e-28
Q4R5M4	257	Protein YIPF5 OS=Macaca f	N/A	no	0.830	0.801	0.324	2e-27
Q5R6W5	257	Protein YIPF5 OS=Pongo ab	no	no	0.830	0.801	0.32	4e-27
Q969M3	257	Protein YIPF5 OS=Homo sap	no	no	0.830	0.801	0.32	4e-27
Q5E9E8	257	Protein YIPF5 OS=Bos taur	yes	no	0.838	0.809	0.313	3e-26
Q6P5I8	257	Protein YIPF5 OS=Danio re	yes	no	0.685	0.661	0.346	6e-26
Q54QY3	212	Protein YIPF5 homolog OS=	yes	no	0.701	0.820	0.342	7e-23

>sp|Q9JIM5|YIPF7_MOUSE Protein YIPF7 OS=Mus musculus GN=Yipf7 PE=2 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 135/239 (56%), Gaps = 10/239 (4%)

Query: 13  PSGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSA--TPASYGGPISTSTSAG 70
           PS  +    GN+   R P A  QP+ PA   + F+  D G     PAS     S S S  
Sbjct: 23  PSCNDSNAYGNVYGYREPQATEQPSSPAPPEM-FLPSDYGGQLFQPASNLDYYSQSPSVD 81

Query: 71  GSASFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQ 129
              +FD+E PLL+ELGI+ D IW+KT ++LNP +  + ++   +DL+GPI+  ++ G   
Sbjct: 82  ---TFDEEPPLLEELGINFDHIWQKTLTVLNPMKPADGSIMNETDLTGPILFCVALGATL 138

Query: 130 LLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSL 189
           L+AGK QFG + G   +  + ++ + N+++  N  +      SV+GYC+LP+V+L++ ++
Sbjct: 139 LMAGKAQFGYVYGMSAIGCLGIHALLNLMS--NSGVSYGCVASVLGYCLLPMVLLSSCAV 196

Query: 190 FLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
           F    G I    + + + W + +++ + +S A   E  + L+AY C L+Y LF+LL +F
Sbjct: 197 FFSLQGTIGTMSALLIITWCSLSASKIFIS-ALAMEGQQLLVAYPCALLYGLFALLTVF 254

Mus musculus (taxid: 10090)

>sp|Q8N8F6|YIPF7_HUMAN Protein YIPF7 OS=Homo sapiens GN=YIPF7 PE=1 SV=2

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/239 (34%), Positives = 132/239 (55%), Gaps = 10/239 (4%)

Query: 14  SGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGS- 72
           SG +    GN+   R   A  QP +PAS     M    G A    +  P S S     S 
Sbjct: 48  SGNDSNAYGNLYGSRKQQAGEQP-QPASFVPSEMLMSSGYA--GQFFQPASNSDYYSQSP 104

Query: 73  --ASFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQ 129
              SFD+E PLL+ELGIH D IW+KT ++LNP + V+ ++   +DL+GPI+  ++ G   
Sbjct: 105 YIDSFDEEPPLLEELGIHFDHIWQKTLTVLNPMKPVDGSIMNETDLTGPILFCVALGATL 164

Query: 130 LLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSL 189
           LLAGK+QFG + G   +  + ++ + N+++  +  +      SV+GYC+LP+VIL+  ++
Sbjct: 165 LLAGKVQFGYVYGMSAIGCLVIHALLNLMS--SSGVSYGCVASVLGYCLLPMVILSGCAM 222

Query: 190 FLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
           F    G      S V + W + +++ + ++ A   E  + L+AY C ++Y LF+LL IF
Sbjct: 223 FFSLQGIFGIMSSLVIIGWCSLSASKIFIA-ALHMEGQQLLVAYPCAILYGLFALLTIF 280

Homo sapiens (taxid: 9606)

>sp|Q7SXS2|YIPF5_XENLA Protein YIPF5 OS=Xenopus laevis GN=yipf5 PE=2 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 134/228 (58%), Gaps = 26/228 (11%)

Query: 23  NINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLL 82
            +NQ++ P    Q  +P  +  P       +AT + YG            ++FDDE PLL
Sbjct: 53  EMNQQQQPYTG-QIYQPTQTYTP-------TATESVYG------------STFDDEPPLL 92

Query: 83  DELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVIL 141
           +ELGI+ D IW+KT ++L+P +V + ++   +DL+GP+V  L+FG   LLAGK+QFG + 
Sbjct: 93  EELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVY 152

Query: 142 GWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAV 201
           G   +  + +Y + N+++     +     +SV+GYC+LP++IL+ F++     G +   +
Sbjct: 153 GISAMGCLGMYCLLNLMSMT--GVSFGCVSSVLGYCLLPMIILSTFAVIFSLQGILGIVL 210

Query: 202 SAVFVLWAARASTNLMVS-LADGGEEHRGLIAYACFLIYTLFSLLVIF 248
           +A+ + W + +++ + +S LA  G++   L+AY C L+Y +F+L+ +F
Sbjct: 211 AALIIGWCSFSASKIFISALAMDGQQL--LVAYPCALLYGVFALISVF 256

Plays a role in transport between endoplasmic reticulum and Golgi.

Xenopus laevis (taxid: 8355)

>sp|Q66KA5|YIPF5_XENTR Protein YIPF5 OS=Xenopus tropicalis GN=yipf5 PE=2 SV=1

 Score =  124 bits (312), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 122/189 (64%), Gaps = 8/189 (4%)

Query: 62  PISTSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIV 120
           P +T +  G  ++FDDE PLL+ELGI+ D IW+KT ++L+P +V +  +   +DL+GP+V
Sbjct: 74  PAATDSVYG--STFDDEPPLLEELGINFDHIWQKTLTVLHPLKVADGNIMNETDLAGPMV 131

Query: 121 LYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLP 180
             L+FG   LLAGK+QFG + G   +  + +Y + N+++     +     +SV+GYC+LP
Sbjct: 132 FCLAFGATLLLAGKIQFGYVYGISAIGCLGMYCLLNLMSMT--GVSFGCVSSVLGYCLLP 189

Query: 181 VVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVS-LADGGEEHRGLIAYACFLIY 239
           ++IL++F++     G +   ++A+ + W + +++ + +S LA  G++   L+AY C L+Y
Sbjct: 190 MIILSSFAVIFSLQGILGIVLAALIIGWCSFSASKIFISALAMDGQQV--LVAYPCALLY 247

Query: 240 TLFSLLVIF 248
            +F+L+ +F
Sbjct: 248 GVFALISVF 256

Plays a role in transport between endoplasmic reticulum and Golgi.

Xenopus tropicalis (taxid: 8364)

>sp|Q4R5M4|YIPF5_MACFA Protein YIPF5 OS=Macaca fascicularis GN=YIPF5 PE=2 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 129/225 (57%), Gaps = 19/225 (8%)

Query: 27  RRVPTAPFQPNRPASSAI--PFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDE 84
           R VP    QP +P +  I  P  ++   S  P  YG             SF+DE PLL+E
Sbjct: 49  RFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPF-YGN------------SFEDEPPLLEE 95

Query: 85  LGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGW 143
           LGI+ D IW+KT ++L+P +V + ++   +DL+GP+V  L+FG   LLAGK+QFG + G 
Sbjct: 96  LGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGI 155

Query: 144 IVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSA 203
             +  + ++ + N+++     +      SV+GYC+LP+++L++F++     G +   ++A
Sbjct: 156 SAIGCLGMFCLLNLMSMT--GVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTA 213

Query: 204 VFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
             + W + +++ + +S A   E  + L+AY C L+Y +F+L+ +F
Sbjct: 214 GIIGWCSFSASKIFIS-ALAMEGQQLLVAYPCALLYGVFALISVF 257

Plays a role in transport between endoplasmic reticulum and Golgi.

Macaca fascicularis (taxid: 9541)

>sp|Q5R6W5|YIPF5_PONAB Protein YIPF5 OS=Pongo abelii GN=YIPF5 PE=2 SV=1

 Score =  121 bits (304), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 129/225 (57%), Gaps = 19/225 (8%)

Query: 27  RRVPTAPFQPNRPASSAI--PFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDE 84
           R VP    QP +P +  I  P  ++   S  P  YG             +F+DE PLL+E
Sbjct: 49  RFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPF-YGN------------NFEDEPPLLEE 95

Query: 85  LGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGW 143
           LGI+ D IW+KT ++L+P +V + ++   +DL+GP+V  L+FG   LLAGK+QFG + G 
Sbjct: 96  LGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGI 155

Query: 144 IVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSA 203
             +  + ++ + N+++     +      SV+GYC+LP+++L++F++     G +   ++A
Sbjct: 156 SAIGCLGMFCLLNLMSMT--GVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTA 213

Query: 204 VFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
             + W + +++ + +S A   E  + L+AY C L+Y +F+L+ +F
Sbjct: 214 GIIGWCSFSASKIFIS-ALAMEGQQLLVAYPCALLYGVFALISVF 257

Plays a role in transport between endoplasmic reticulum and Golgi.

Pongo abelii (taxid: 9601)

>sp|Q969M3|YIPF5_HUMAN Protein YIPF5 OS=Homo sapiens GN=YIPF5 PE=1 SV=1

 Score =  121 bits (304), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 129/225 (57%), Gaps = 19/225 (8%)

Query: 27  RRVPTAPFQPNRPASSAI--PFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDE 84
           R VP    QP +P +  I  P  ++   S  P  YG             +F+DE PLL+E
Sbjct: 49  RFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPF-YGN------------NFEDEPPLLEE 95

Query: 85  LGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGW 143
           LGI+ D IW+KT ++L+P +V + ++   +DL+GP+V  L+FG   LLAGK+QFG + G 
Sbjct: 96  LGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGI 155

Query: 144 IVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSA 203
             +  + ++ + N+++     +      SV+GYC+LP+++L++F++     G +   ++A
Sbjct: 156 SAIGCLGMFCLLNLMSMT--GVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTA 213

Query: 204 VFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
             + W + +++ + +S A   E  + L+AY C L+Y +F+L+ +F
Sbjct: 214 GIIGWCSFSASKIFIS-ALAMEGQQLLVAYPCALLYGVFALISVF 257

Plays a role in transport between endoplasmic reticulum and Golgi.

Homo sapiens (taxid: 9606)

>sp|Q5E9E8|YIPF5_BOVIN Protein YIPF5 OS=Bos taurus GN=YIPF5 PE=2 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 127/223 (56%), Gaps = 15/223 (6%)

Query: 27  RRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDELG 86
           R VP    QP +P +  I   +      TP  + G            +F+DE PLL+ELG
Sbjct: 49  RFVPADMMQPQQPYTGQIFQPTQTYTPTTPQPFYGN-----------NFEDEPPLLEELG 97

Query: 87  IHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIV 145
           I+ D IW+KT ++L+P +V + ++   +DL+GP+V  L+FG   LLAGK+QFG + G   
Sbjct: 98  INFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISA 157

Query: 146 VSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVF 205
           +  + ++ + N+++     +      SV+GYC+LP+++L++F++     G +   ++A  
Sbjct: 158 IGCLGMFCLLNLMSMT--GVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGI 215

Query: 206 VLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
           + W + +++ + +S A   E  + L+AY C L+Y +F+L+ +F
Sbjct: 216 IGWCSFSASKIFIS-ALAMEGQQLLVAYPCALLYGVFALISVF 257

Plays a role in transport between endoplasmic reticulum and Golgi.

Bos taurus (taxid: 9913)

>sp|Q6P5I8|YIPF5_DANRE Protein YIPF5 OS=Danio rerio GN=yipf5 PE=2 SV=1

 Score =  117 bits (294), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 111/176 (63%), Gaps = 6/176 (3%)

Query: 75  FDDEEPLLDELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAG 133
           F+DE PLL+ELGI+ D IW+KT ++L+P +  + ++   +DL+GP+V  L+FG   LL G
Sbjct: 86  FEDEPPLLEELGINFDHIWQKTLTVLHPLKASDGSIMNETDLAGPMVFCLAFGATLLLTG 145

Query: 134 KLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQ 193
           K+QFG + G   +  + +Y + N+++     +      SV+GYC+LP++IL++F +    
Sbjct: 146 KIQFGYVYGISAIGCLGMYCLLNLMSMT--GVSFGCVASVLGYCLLPMIILSSFGVIFSL 203

Query: 194 GGAIRFAVSAVFVLWAARASTNLMVS-LADGGEEHRGLIAYACFLIYTLFSLLVIF 248
            G +   ++A  + W + +++ + +S LA  G++   L+AY C L+Y +F+L+ +F
Sbjct: 204 QGIMGIILTAAIIGWCSLSASKIFISALAMDGQQL--LVAYPCALLYGVFALISVF 257

Plays a role in transport between endoplasmic reticulum and Golgi.

Danio rerio (taxid: 7955)

>sp|Q54QY3|YIPF5_DICDI Protein YIPF5 homolog OS=Dictyostelium discoideum GN=yipf5 PE=3 SV=1

 Score =  107 bits (268), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 110/178 (61%), Gaps = 4/178 (2%)

Query: 72  SASFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQL 130
           + SFD+E PLL+ELGI+ D I  KT S+LNP + ++  +   +DL GPI+  L  G   L
Sbjct: 38  TDSFDNELPLLEELGINFDHIRSKTLSVLNPLKKIDSHIMDDTDLGGPILFGLLLGFSLL 97

Query: 131 LAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLF 190
           ++GK+QFG I G  ++  + +Y+V N+++ +   +D++   SV+GYC+LP++ L+  SL 
Sbjct: 98  MSGKIQFGYIYGLGLIGCVSMYIVLNLMSEK--GIDIYRVISVLGYCLLPMIFLSFTSLI 155

Query: 191 LPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
           +   G + + +    ++W+  +++ + V +    ++ R L+AY   L+YT F+L+  F
Sbjct: 156 ININGMVGYILIGFAIVWSTYSASKMFVKVLSMIDQ-RILVAYPVGLLYTGFALITAF 212

Plays a role in transport between endoplasmic reticulum and Golgi.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
224102967	250	predicted protein [Populus trichocarpa]	1.0	0.992	0.8	1e-110
255575657	254	golgi membrane protein sb140, putative [	0.991	0.968	0.792	1e-110
302746504	255	golgi membrane protein sb140 [Prunus arm	1.0	0.972	0.792	1e-110
224132124	250	predicted protein [Populus trichocarpa]	1.0	0.992	0.8	1e-109
302746510	254	golgi membrane protein sb140 [Prunus per	1.0	0.976	0.803	1e-109
356572548	248	PREDICTED: protein YIPF5-like [Glycine m	0.979	0.979	0.776	1e-104
356505356	248	PREDICTED: protein YIPF5-like [Glycine m	0.979	0.979	0.768	1e-103
15231678	257	Yip1 integral membrane domain-containing	1.0	0.964	0.723	1e-100
449500935	253	PREDICTED: protein YIPF5-like [Cucumis s	0.983	0.964	0.767	1e-100
297827109	255	hypothetical protein ARALYDRAFT_482602 [	0.995	0.968	0.757	1e-99

>gi|224102967|ref|XP_002312874.1| predicted protein [Populus trichocarpa] gi|118483530|gb|ABK93663.1| unknown [Populus trichocarpa] gi|222849282|gb|EEE86829.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/250 (80%), Positives = 222/250 (88%), Gaps = 2/250 (0%)

Query: 1   MTKEFSVPPVVFPSGGNPT--TAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPAS 58
           M++EF+VPPVVFPSGGNPT  T GNI QRRVPTAPFQP+RP++S IPFMSF+IGSA   +
Sbjct: 1   MSREFAVPPVVFPSGGNPTVATGGNIQQRRVPTAPFQPSRPSNSGIPFMSFEIGSAATNT 60

Query: 59  YGGPISTSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGP 118
            G     +   GG+A+FDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPT HK SDLSGP
Sbjct: 61  SGPIGGGTGPIGGAANFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTFHKDSDLSGP 120

Query: 119 IVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCM 178
           I LYLSF LFQLLAGK+QFGVILGWIVVSSIFLYVVFNMLAGR+GNLDLHTCTSV+GYC+
Sbjct: 121 IFLYLSFCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRHGNLDLHTCTSVIGYCL 180

Query: 179 LPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLI 238
           LPVVIL+A SLF+PQ GAIR  +S VFV+W+ RA TNLMV++ADGGEEHRGLIAYACFLI
Sbjct: 181 LPVVILSAVSLFVPQNGAIRLGISGVFVIWSTRACTNLMVAVADGGEEHRGLIAYACFLI 240

Query: 239 YTLFSLLVIF 248
           YTLFSLLVIF
Sbjct: 241 YTLFSLLVIF 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575657|ref|XP_002528728.1| golgi membrane protein sb140, putative [Ricinus communis] gi|223531822|gb|EEF33640.1| golgi membrane protein sb140, putative [Ricinus communis]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/256 (79%), Positives = 223/256 (87%), Gaps = 10/256 (3%)

Query: 1   MTKEFSVPPVVFPSGGNPTTAG--NINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPAS 58
           MTKEF+VPPV+FPSGGNPT AG  N+ QRRVPTAPFQP RP++S IPFMSF+IGSAT A+
Sbjct: 1   MTKEFTVPPVIFPSGGNPTVAGASNMQQRRVPTAPFQPPRPSNSGIPFMSFEIGSATTAA 60

Query: 59  ------YGGPISTSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKG 112
                  GG  S  +SAG  A+FDDEEPLLDELGIHPDQIW+KTKSILNPFRVNP VHK 
Sbjct: 61  PFGAGPIGGGGSAVSSAG--ANFDDEEPLLDELGIHPDQIWRKTKSILNPFRVNPNVHKD 118

Query: 113 SDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTS 172
           SDLSGPI LYLS  LFQLLAGK+QFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTS
Sbjct: 119 SDLSGPIFLYLSLCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTS 178

Query: 173 VVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIA 232
           V+GYC+LPVVIL+A SLFLP GG IRF ++ +FV+WA R  TNLMVS+ADGGEEHRGLI+
Sbjct: 179 VIGYCLLPVVILSAISLFLPNGGPIRFMIAGLFVIWATRVCTNLMVSVADGGEEHRGLIS 238

Query: 233 YACFLIYTLFSLLVIF 248
           YACFLIYTLFSLLVIF
Sbjct: 239 YACFLIYTLFSLLVIF 254

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302746504|gb|ADL62864.1| golgi membrane protein sb140 [Prunus armeniaca]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/255 (79%), Positives = 224/255 (87%), Gaps = 7/255 (2%)

Query: 1   MTKEFSVPPVVFPSGGNPTTAG--NINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPAS 58
           MTK+F+VPPVVFPSGGNP+  G  NI QRRV TAPFQP R ++S+IPFMSFDIGSA  AS
Sbjct: 1   MTKQFAVPPVVFPSGGNPSAVGSNNIQQRRVATAPFQPPRSSTSSIPFMSFDIGSAAAAS 60

Query: 59  -----YGGPISTSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGS 113
                +GGPI +S+  GGSASF+DEEPLLDELGIHPDQIW+KTKSILNPFR NP VHK S
Sbjct: 61  SSSSLFGGPIGSSSIPGGSASFEDEEPLLDELGIHPDQIWRKTKSILNPFRSNPAVHKDS 120

Query: 114 DLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSV 173
           DLSGPI+LY+S  LFQLLAGK+QFGVILGWIVVSSIFLY+VFNMLAGRNGNLDLH CTSV
Sbjct: 121 DLSGPILLYMSLCLFQLLAGKIQFGVILGWIVVSSIFLYIVFNMLAGRNGNLDLHRCTSV 180

Query: 174 VGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAY 233
           +GYCMLPVVIL+A SLF+PQGG+ R AV+AVFVLWA R  T LMV+LADGG+EHRGLIAY
Sbjct: 181 IGYCMLPVVILSAASLFVPQGGSFRIAVAAVFVLWATRVCTGLMVALADGGDEHRGLIAY 240

Query: 234 ACFLIYTLFSLLVIF 248
           ACFLIYTLFSLLVIF
Sbjct: 241 ACFLIYTLFSLLVIF 255

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132124|ref|XP_002328191.1| predicted protein [Populus trichocarpa] gi|222837706|gb|EEE76071.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/250 (80%), Positives = 219/250 (87%), Gaps = 2/250 (0%)

Query: 1   MTKEFSVPPVVFPSGGNPT--TAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPAS 58
           MTKEF+VPPVVFPS GNPT  T GNI QRRVP APFQP RP++S IPFMSFDIGSA   +
Sbjct: 1   MTKEFAVPPVVFPSVGNPTVATGGNIQQRRVPIAPFQPPRPSNSGIPFMSFDIGSAAATT 60

Query: 59  YGGPISTSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGP 118
            G     +   GG A+FDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPT HK SDLSGP
Sbjct: 61  AGPIGGGTGPIGGVANFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTFHKDSDLSGP 120

Query: 119 IVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCM 178
           I LYLSF LFQLLAGK+QFGVILGWIVVSSIFLYVVFNMLAGR+GNL+LHTCTSV+GYC+
Sbjct: 121 IFLYLSFCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRHGNLNLHTCTSVIGYCL 180

Query: 179 LPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLI 238
           LPVVIL+A SLF+PQ GA+RF ++ VFV+WA RA TNLMV++ADGGEEHRGLIAYACFLI
Sbjct: 181 LPVVILSAVSLFVPQNGALRFGIAGVFVIWATRACTNLMVAVADGGEEHRGLIAYACFLI 240

Query: 239 YTLFSLLVIF 248
           YTLFSLLVIF
Sbjct: 241 YTLFSLLVIF 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302746510|gb|ADL62869.1| golgi membrane protein sb140 [Prunus persica]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/254 (80%), Positives = 224/254 (88%), Gaps = 6/254 (2%)

Query: 1   MTKEFSVPPVVFPSGGNPTTAG--NINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPAS 58
           MTKEF+VPPVVFPSGGNP+  G  NI QRRV TAPFQP R +SS+IPFMSFDIGSA  AS
Sbjct: 1   MTKEFAVPPVVFPSGGNPSAVGSNNIQQRRVATAPFQPPRSSSSSIPFMSFDIGSAAAAS 60

Query: 59  ----YGGPISTSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSD 114
               +GGPI +S+  GGSASF+DEEPLLDELGIHPDQIW+KTKSILNPFR NP VHK SD
Sbjct: 61  SSSLFGGPIGSSSIPGGSASFEDEEPLLDELGIHPDQIWRKTKSILNPFRSNPAVHKDSD 120

Query: 115 LSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVV 174
           LSGPI+LY+S  LFQLLAGK+QFGVILGWIVVSSIFLY+VFNMLAGRNGNLDLH CTSV+
Sbjct: 121 LSGPILLYMSLCLFQLLAGKIQFGVILGWIVVSSIFLYIVFNMLAGRNGNLDLHRCTSVI 180

Query: 175 GYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYA 234
           GYCMLPVVIL+A SLF+PQGG+ R AV+AVFVLWA R  T LMV+LADGG+EHRGLIAYA
Sbjct: 181 GYCMLPVVILSAASLFVPQGGSFRIAVAAVFVLWATRVCTGLMVALADGGDEHRGLIAYA 240

Query: 235 CFLIYTLFSLLVIF 248
           CFLIYTLFSLLVIF
Sbjct: 241 CFLIYTLFSLLVIF 254

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572548|ref|XP_003554430.1| PREDICTED: protein YIPF5-like [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/250 (77%), Positives = 212/250 (84%), Gaps = 7/250 (2%)

Query: 2   TKEFSVPPVVFPSGGNPTTAG-NINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYG 60
            KEF VPPV FPS GNP +AG N+ QRR+PT PFQPN    S IPFMSFDIGSA  ++  
Sbjct: 3   NKEFKVPPVAFPSAGNPASAGPNLQQRRMPTPPFQPN----SGIPFMSFDIGSAAASTSS 58

Query: 61  GPIST--STSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGP 118
           GPI T  +  AGGSA+FDDEEPLLDELGIHPDQIW K +S+LNPFRVN TVHK SDLSGP
Sbjct: 59  GPIYTGPAVGAGGSANFDDEEPLLDELGIHPDQIWSKIRSVLNPFRVNHTVHKDSDLSGP 118

Query: 119 IVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCM 178
           I+LY+SF LFQLLAGK+QFGVILGWIVVSSIFLYVVFNMLAGR GNLDLHTCTSVVGYC+
Sbjct: 119 ILLYMSFCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRTGNLDLHTCTSVVGYCL 178

Query: 179 LPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLI 238
           LPVVI +A SLFLP  G IR +V+AVFVLWA RAS  L+VSLADGG+EHRGLIAYA FLI
Sbjct: 179 LPVVIFSALSLFLPVDGVIRLSVAAVFVLWATRASAGLVVSLADGGDEHRGLIAYASFLI 238

Query: 239 YTLFSLLVIF 248
           YTLFSLLVIF
Sbjct: 239 YTLFSLLVIF 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505356|ref|XP_003521457.1| PREDICTED: protein YIPF5-like [Glycine max]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/250 (76%), Positives = 210/250 (84%), Gaps = 7/250 (2%)

Query: 2   TKEFSVPPVVFPSGGNPTTAG-NINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYG 60
            KEF VPPV FPS GNP  AG N+ QRR+PT PFQPN    S IPFMSFDIGSA  ++  
Sbjct: 3   NKEFKVPPVAFPSAGNPAAAGPNLQQRRMPTPPFQPN----SGIPFMSFDIGSAAASTSS 58

Query: 61  GPIST--STSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGP 118
           GPI T  +   GGSA+FDDEEPLLDELGIHPDQIW K +S+LNPFRVN TVHK SDLSGP
Sbjct: 59  GPIYTGPAVGPGGSANFDDEEPLLDELGIHPDQIWSKIRSVLNPFRVNHTVHKDSDLSGP 118

Query: 119 IVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCM 178
           I+LY+SF LFQLLAGK+QFGVILGWIVVSSIFLYVVFNMLAGR GNLDLHTCTSVVGYC+
Sbjct: 119 ILLYMSFCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRTGNLDLHTCTSVVGYCL 178

Query: 179 LPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLI 238
           LPVVI +A SLFLP  G IR +V++VFVLWA RAS  L+VSLADGG+EHRGLIAYA FLI
Sbjct: 179 LPVVIFSALSLFLPVDGVIRLSVASVFVLWATRASAGLVVSLADGGDEHRGLIAYASFLI 238

Query: 239 YTLFSLLVIF 248
           YTLFSLLVIF
Sbjct: 239 YTLFSLLVIF 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231678|ref|NP_190844.1| Yip1 integral membrane domain-containing protein [Arabidopsis thaliana] gi|7669950|emb|CAB89237.1| putative protein [Arabidopsis thaliana] gi|332645469|gb|AEE78990.1| Yip1 integral membrane domain-containing protein [Arabidopsis thaliana]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/257 (72%), Positives = 213/257 (82%), Gaps = 9/257 (3%)

Query: 1   MTKEFSVPPVVFPSGGNPTTAGNINQRRVPTAPFQPNRP--ASSAIPFMSFDIGSATPAS 58
           MTK+F +PPVVFP+ G+     N+ QRRVPTAP+QP R   ASS+IPF+ F+IGSA  + 
Sbjct: 1   MTKDFPIPPVVFPTSGSSPATANVQQRRVPTAPYQPPRQSSASSSIPFIPFEIGSAAVSM 60

Query: 59  YGGPI------STSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKG 112
             GP       S S   G SASF+DEEPLLDELGIHPDQIWKKT+SILNPFR+N TVHK 
Sbjct: 61  PAGPFDGTIASSASFGRGVSASFEDEEPLLDELGIHPDQIWKKTRSILNPFRINQTVHKD 120

Query: 113 SDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTS 172
           SDLSGPI LYL+  LFQLLAGK+QFGVILGW+VVSSIFLY+VFNMLAGRNGNL+LHTCTS
Sbjct: 121 SDLSGPIFLYLALCLFQLLAGKIQFGVILGWVVVSSIFLYIVFNMLAGRNGNLNLHTCTS 180

Query: 173 VVGYCMLPVVILAAFSLFLPQG-GAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLI 231
           +VGY +LPVVIL+A SLF+PQG G +RF + A FVLWA RA +NL+VSLADGGEEHRGLI
Sbjct: 181 LVGYSLLPVVILSAVSLFVPQGAGPVRFVLGAAFVLWATRACSNLVVSLADGGEEHRGLI 240

Query: 232 AYACFLIYTLFSLLVIF 248
           +YACFLIYTLFSLLVIF
Sbjct: 241 SYACFLIYTLFSLLVIF 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500935|ref|XP_004161234.1| PREDICTED: protein YIPF5-like [Cucumis sativus]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/254 (76%), Positives = 212/254 (83%), Gaps = 10/254 (3%)

Query: 1   MTKEFSVPPVVFPSGGNPTTAGNINQRR-VPTAPFQPNRPASSAIPFMSFDIGSATPASY 59
           + KEF+VPPVVFPSGGNP    N+ QRR V TAPFQP R   S+IPFMSFDIGSA  AS 
Sbjct: 4   VKKEFAVPPVVFPSGGNP----NLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAAST 59

Query: 60  GGPISTSTSAGGS-----ASFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSD 114
                     GG      A+F+DEEPLLDELGIHPDQIWKKTKSILNPFRV P VHK SD
Sbjct: 60  SSGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSD 119

Query: 115 LSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVV 174
           LSGPI+LY+ FGLFQLLAGK+QFGVILGWIVVSSIFLYVVFNMLAGRNGNL+LHTCTSVV
Sbjct: 120 LSGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVV 179

Query: 175 GYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYA 234
           GYCMLPVV+L+A SLFLPQ G +RFAV+ VFVLWA R  T+LMVSLADGG+EHRGLIAYA
Sbjct: 180 GYCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYA 239

Query: 235 CFLIYTLFSLLVIF 248
           CFLI+TLFSLLVIF
Sbjct: 240 CFLIFTLFSLLVIF 253

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827109|ref|XP_002881437.1| hypothetical protein ARALYDRAFT_482602 [Arabidopsis lyrata subsp. lyrata] gi|297327276|gb|EFH57696.1| hypothetical protein ARALYDRAFT_482602 [Arabidopsis lyrata subsp. lyrata]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 194/256 (75%), Positives = 223/256 (87%), Gaps = 9/256 (3%)

Query: 1   MTKEFSVPPVVFPSGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSA-----T 55
           MTK+F+VPPVVFPSGG+ +   N+ QRR P  PFQP RP+SSAIPFMSFDIGSA     T
Sbjct: 1   MTKDFAVPPVVFPSGGS-SAGPNVQQRRFPATPFQPPRPSSSAIPFMSFDIGSAAASSAT 59

Query: 56  PAS-YGGPISTSTSAGGSASF-DDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGS 113
           PA  +GG I++S+S GG ++  +DEEPLLDELGIHPDQIWKKT+SILNPFR+N TVHK S
Sbjct: 60  PAGPFGGTIASSSSFGGGSASFEDEEPLLDELGIHPDQIWKKTRSILNPFRINQTVHKDS 119

Query: 114 DLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSV 173
           DLSGPI LYL+  LFQLLAGK+QFGVILGWIVVSSIFLYVVFNMLAGRNGNL+LHTCTS+
Sbjct: 120 DLSGPIFLYLALCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSL 179

Query: 174 VGYCMLPVVILAAFSLFLPQG-GAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIA 232
           VGYC+LPVV+L+A SLF+PQG G +RF ++AVFVLW+ RA + L+VSLADGGEEHRGLIA
Sbjct: 180 VGYCLLPVVVLSAVSLFVPQGAGPVRFVLAAVFVLWSTRACSTLVVSLADGGEEHRGLIA 239

Query: 233 YACFLIYTLFSLLVIF 248
           YACFLIYTLFSLLVIF
Sbjct: 240 YACFLIYTLFSLLVIF 255

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2049450	255	AT2G36300 "AT2G36300" [Arabido	0.995	0.968	0.742	5.2e-97
TAIR|locus:2083273	257	AT3G52760 "AT3G52760" [Arabido	0.995	0.961	0.713	2.1e-93
MGI|MGI:1922831	254	Yipf7 "Yip1 domain family, mem	0.919	0.897	0.329	1.6e-31
GENEDB_PFALCIPARUM|PF14_0689	314	PF14_0689 "hypothetical protei	0.685	0.541	0.379	6.8e-30
UNIPROTKB|Q8IKB7	314	PF14_0689 "Yip1 protein, putat	0.685	0.541	0.379	6.8e-30
UNIPROTKB|J3KR00	257	YIPF7 "Protein YIPF7" [Homo sa	0.919	0.887	0.337	7.9e-30
UNIPROTKB|Q8N8F6	280	YIPF7 "Protein YIPF7" [Homo sa	0.919	0.814	0.337	7.9e-30
UNIPROTKB|F1S3T2	255	YIPF7 "Uncharacterized protein	0.919	0.894	0.330	1e-29
RGD|1310766	256	Yipf7 "Yip1 domain family, mem	0.903	0.875	0.330	4.4e-29
FB|FBgn0032465	264	CG12404 [Drosophila melanogast	0.866	0.814	0.333	2.4e-28

TAIR|locus:2049450 AT2G36300 "AT2G36300" [Arabidopsis thaliana (taxid:3702)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 190/256 (74%), Positives = 214/256 (83%)

Query:     1 MTKEFSVPPVVFPSGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSA-----T 55
             MTK+F+VPPVVFPSGG+   A N+ QRR P  PFQP RP+SSAIPFMSFDIGSA     T
Sbjct:     1 MTKDFAVPPVVFPSGGSSGGA-NVQQRRFPATPFQPPRPSSSAIPFMSFDIGSAAASSAT 59

Query:    56 PAS-YGGPIXXXXXXXX-XXXFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGS 113
             PA  +GG I            F+DEEPLLDELGIHPDQIWKKT+SILNPFR+N  VHK S
Sbjct:    60 PAGPFGGTIASSSSFGGGSASFEDEEPLLDELGIHPDQIWKKTRSILNPFRINQAVHKDS 119

Query:   114 DLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSV 173
             DLSGPI LYL+  LFQLLAGK+QFGVILGWIVVSSIFLYVVFNMLAGRNGNL+LHTCTS+
Sbjct:   120 DLSGPIFLYLALCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSL 179

Query:   174 VGYCMLPVVILAAFSLFLPQG-GAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIA 232
             VGYC+LPVV+L+A SLF+PQG G +RF ++A+FVLW+ RA + L+VSLADGGEEHRGLIA
Sbjct:   180 VGYCLLPVVVLSAVSLFVPQGAGPVRFVLAALFVLWSTRACSTLVVSLADGGEEHRGLIA 239

Query:   233 YACFLIYTLFSLLVIF 248
             YACFLIYTLFSLLVIF
Sbjct:   240 YACFLIYTLFSLLVIF 255

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2083273 AT3G52760 "AT3G52760" [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 184/258 (71%), Positives = 210/258 (81%)

Query:     1 MTKEFSVPPVVFP-SGGNPTTAGNINQRRVPTAPFQPNRP--ASSAIPFMSFDIGSATPA 57
             MTK+F +PPVVFP SG +P TA N+ QRRVPTAP+QP R   ASS+IPF+ F+IGSA  +
Sbjct:     1 MTKDFPIPPVVFPTSGSSPATA-NVQQRRVPTAPYQPPRQSSASSSIPFIPFEIGSAAVS 59

Query:    58 SYGGPIXXXXXXXXX------XXFDDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHK 111
                GP                  F+DEEPLLDELGIHPDQIWKKT+SILNPFR+N TVHK
Sbjct:    60 MPAGPFDGTIASSASFGRGVSASFEDEEPLLDELGIHPDQIWKKTRSILNPFRINQTVHK 119

Query:   112 GSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCT 171
              SDLSGPI LYL+  LFQLLAGK+QFGVILGW+VVSSIFLY+VFNMLAGRNGNL+LHTCT
Sbjct:   120 DSDLSGPIFLYLALCLFQLLAGKIQFGVILGWVVVSSIFLYIVFNMLAGRNGNLNLHTCT 179

Query:   172 SVVGYCMLPVVILAAFSLFLPQG-GAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGL 230
             S+VGY +LPVVIL+A SLF+PQG G +RF + A FVLWA RA +NL+VSLADGGEEHRGL
Sbjct:   180 SLVGYSLLPVVILSAVSLFVPQGAGPVRFVLGAAFVLWATRACSNLVVSLADGGEEHRGL 239

Query:   231 IAYACFLIYTLFSLLVIF 248
             I+YACFLIYTLFSLLVIF
Sbjct:   240 ISYACFLIYTLFSLLVIF 257

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

MGI|MGI:1922831 Yipf7 "Yip1 domain family, member 7" [Mus musculus (taxid:10090)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 79/240 (32%), Positives = 134/240 (55%)

Query:    13 PSGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSAT--PASYGGPIXXXXXXX 70
             PS  +    GN+   R P A  QP+ PA   + F+  D G     PAS    +       
Sbjct:    23 PSCNDSNAYGNVYGYREPQATEQPSSPAPPEM-FLPSDYGGQLFQPASN---LDYYSQSP 78

Query:    71 XXXXFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQ 129
                 FD+E PLL+ELGI+ D IW+KT ++LNP +  + ++   +DL+GPI+  ++ G   
Sbjct:    79 SVDTFDEEPPLLEELGINFDHIWQKTLTVLNPMKPADGSIMNETDLTGPILFCVALGATL 138

Query:   130 LLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSL 189
             L+AGK QFG + G   +  + ++ + N+++  N  +      SV+GYC+LP+V+L++ ++
Sbjct:   139 LMAGKAQFGYVYGMSAIGCLGIHALLNLMS--NSGVSYGCVASVLGYCLLPMVLLSSCAV 196

Query:   190 FLPQGGAIRFAVSAVFVLWAARASTNLMVS-LADGGEEHRGLIAYACFLIYTLFSLLVIF 248
             F    G I    + + + W + +++ + +S LA  G++   L+AY C L+Y LF+LL +F
Sbjct:   197 FFSLQGTIGTMSALLIITWCSLSASKIFISALAMEGQQL--LVAYPCALLYGLFALLTVF 254

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GENEDB_PFALCIPARUM|PF14_0689 PF14_0689 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 307 (113.1 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 66/174 (37%), Positives = 111/174 (63%)

Query:    76 DDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKL 135
             ++E PLL+ELGI+ D I K+ KS+   ++++ T+ + SDLSGP+++ LS G   LLAGK 
Sbjct:   144 EEESPLLEELGINFDLISKRMKSVFLFYKIDHTLFENSDLSGPLIIVLSLGFILLLAGKA 203

Query:   136 QFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGG 195
              F  I    +VSS+ +Y++ NM++ +N  +DL+   S++GY +LP+VIL+  S+ +    
Sbjct:   204 SFSYIYLIGIVSSLSIYLLLNMMS-QNSTVDLYRTISMLGYALLPLVILSLISIIINLRS 262

Query:   196 AIRFAVSAVFVLWAA-RASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
                + +S   +LW+A  AS    V+L    + +  L+AY  FL+Y+ F+L++IF
Sbjct:   263 KKGYCISFFCILWSALTASRFFEVALRMNSQRY--LVAYPIFLLYSCFALIIIF 314

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IKB7 PF14_0689 "Yip1 protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 307 (113.1 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 66/174 (37%), Positives = 111/174 (63%)

Query:    76 DDEEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKL 135
             ++E PLL+ELGI+ D I K+ KS+   ++++ T+ + SDLSGP+++ LS G   LLAGK 
Sbjct:   144 EEESPLLEELGINFDLISKRMKSVFLFYKIDHTLFENSDLSGPLIIVLSLGFILLLAGKA 203

Query:   136 QFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGG 195
              F  I    +VSS+ +Y++ NM++ +N  +DL+   S++GY +LP+VIL+  S+ +    
Sbjct:   204 SFSYIYLIGIVSSLSIYLLLNMMS-QNSTVDLYRTISMLGYALLPLVILSLISIIINLRS 262

Query:   196 AIRFAVSAVFVLWAA-RASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
                + +S   +LW+A  AS    V+L    + +  L+AY  FL+Y+ F+L++IF
Sbjct:   263 KKGYCISFFCILWSALTASRFFEVALRMNSQRY--LVAYPIFLLYSCFALIIIF 314

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|J3KR00 YIPF7 "Protein YIPF7" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 81/240 (33%), Positives = 129/240 (53%)

Query:    14 SGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSA----TPASYGGPIXXXXXX 69
             SG +    GN+   R   A  QP +PAS     M    G A     PAS           
Sbjct:    25 SGNDSNAYGNLYGSRKQQAGEQP-QPASFVPSEMLMSSGYAGQFFQPASNSD---YYSQS 80

Query:    70 XXXXXFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLF 128
                  FD+E PLL+ELGIH D IW+KT ++LNP + V+ ++   +DL+GPI+  ++ G  
Sbjct:    81 PYIDSFDEEPPLLEELGIHFDHIWQKTLTVLNPMKPVDGSIMNETDLTGPILFCVALGAT 140

Query:   129 QLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFS 188
              LLAGK+QFG + G   +  + ++ + N+++  +  +      SV+GYC+LP+VIL+  +
Sbjct:   141 LLLAGKVQFGYVYGMSAIGCLVIHALLNLMS--SSGVSYGCVASVLGYCLLPMVILSGCA 198

Query:   189 LFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
             +F    G      S V + W + +++ + ++ A   E  + L+AY C ++Y LF+LL IF
Sbjct:   199 MFFSLQGIFGIMSSLVIIGWCSLSASKIFIA-ALHMEGQQLLVAYPCAILYGLFALLTIF 257

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q8N8F6 YIPF7 "Protein YIPF7" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 81/240 (33%), Positives = 129/240 (53%)

Query:    14 SGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSA----TPASYGGPIXXXXXX 69
             SG +    GN+   R   A  QP +PAS     M    G A     PAS           
Sbjct:    48 SGNDSNAYGNLYGSRKQQAGEQP-QPASFVPSEMLMSSGYAGQFFQPASNSD---YYSQS 103

Query:    70 XXXXXFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLF 128
                  FD+E PLL+ELGIH D IW+KT ++LNP + V+ ++   +DL+GPI+  ++ G  
Sbjct:   104 PYIDSFDEEPPLLEELGIHFDHIWQKTLTVLNPMKPVDGSIMNETDLTGPILFCVALGAT 163

Query:   129 QLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFS 188
              LLAGK+QFG + G   +  + ++ + N+++  +  +      SV+GYC+LP+VIL+  +
Sbjct:   164 LLLAGKVQFGYVYGMSAIGCLVIHALLNLMS--SSGVSYGCVASVLGYCLLPMVILSGCA 221

Query:   189 LFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
             +F    G      S V + W + +++ + ++ A   E  + L+AY C ++Y LF+LL IF
Sbjct:   222 MFFSLQGIFGIMSSLVIIGWCSLSASKIFIA-ALHMEGQQLLVAYPCAILYGLFALLTIF 280

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|F1S3T2 YIPF7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 79/239 (33%), Positives = 131/239 (54%)

Query:    14 SGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPIXX---XXXXX 70
             SG  P   GN+ + R   A  QP  P S+ IP   F I S     +  P           
Sbjct:    24 SGNEPHAYGNLYESRKQQASEQP--P-SAFIPSEMF-IPSGYSGQFLQPESNPDYYSQSS 79

Query:    71 XXXXFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQ 129
                 FD+E PLL+ELGI+ D IW+KT ++LNP +  + ++   +DL+GPI+ +++ G   
Sbjct:    80 YIDSFDEEPPLLEELGINFDHIWQKTLTVLNPLKPADGSIMNETDLTGPILFFVALGTTL 139

Query:   130 LLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSL 189
             LLAGK+QFG + G   +  + ++ + N+++  +  +      SV+GYC+LP+VIL++ ++
Sbjct:   140 LLAGKVQFGYVYGMSAIGCLGIHGLLNLMS--SSGVSYGCVASVLGYCLLPMVILSSCAI 197

Query:   190 FLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
             F          ++ V + W + +++ + +S  D  E  + LIAY C L+Y LF+LL +F
Sbjct:   198 FFSLQDTFGTVLALVVIGWCSLSASKIFISALDM-EGQQLLIAYPCALLYGLFALLTVF 255

GO:0016020 "membrane" evidence=IEA

RGD|1310766 Yipf7 "Yip1 domain family, member 7" [Rattus norvegicus (taxid:10116)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 79/239 (33%), Positives = 131/239 (54%)

Query:    17 NPTTA-GNINQRRVPTA--PFQPNRPASSAIPFMSFDIGSAT--PASYGGPIXXXXXXXX 71
             N + A GN    R P A    QP+ P    + F+S D G     PAS    +        
Sbjct:    26 NDSNAYGNFYGSRQPQAREQCQPSSPVPPEM-FLSSDYGGQLFQPASN---LHYYSQSSS 81

Query:    72 XXXFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQL 130
                FD+E PLL+ELGI+ D IW+KT ++LNP +  + ++   +DL+GPI+  ++ G   L
Sbjct:    82 VDSFDEEPPLLEELGINFDHIWQKTLTVLNPMKPADGSIMNETDLTGPILFCVALGATLL 141

Query:   131 LAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLF 190
             +AGK QFG I G   +    ++ + N+++  +  +      SV+GYC+LP+VIL++ ++F
Sbjct:   142 MAGKAQFGYIYGMSAIGCFGIHALLNLMS--SSGVSYGCVASVLGYCLLPMVILSSCAVF 199

Query:   191 LPQGGAIRFAVSAVFVLWAARASTNLMVS-LADGGEEHRGLIAYACFLIYTLFSLLVIF 248
                 G      + + + W + +++ + +S LA  G++   L+AY C L+Y LF+LL +F
Sbjct:   200 FSLQGTAGTMSALLIITWCSLSASKIFISALAMEGQQL--LVAYPCALLYGLFALLTVF 256

GO:0016020 "membrane" evidence=IEA

FB|FBgn0032465 CG12404 [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 75/225 (33%), Positives = 123/225 (54%)

Query:    32 APFQPNRPASSAIPFMS-----FDIGSATPASYGGPIXXXXXXXXXXX--FDDEEPLLDE 84
             A   PN  AS A P        +D  + T  SYG                FDDE PLL+E
Sbjct:    42 ASVPPNYDASYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLEE 101

Query:    85 LGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGW 143
             LGI+P+ I++KT ++LNP R  +  + + +D++GP+V  L+ G F LL+GK+ F  I G 
Sbjct:   102 LGINPNHIFQKTLAVLNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLSGKVTFSYIYGI 161

Query:   144 IVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSA 203
              V+  IF Y + +++  R+  +      SV+GYC+LP+V+L+  ++ +   G +   VS 
Sbjct:   162 GVMGCIFFYCLLSLMVSRS-QVTFGAVASVLGYCLLPMVVLSGINILITIQGTLGLIVSG 220

Query:   204 VFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
             + + W A +++ L  + A   +  + LIAY C ++Y  F+L+ I+
Sbjct:   221 ISIFWCAISASKLFAT-AFSMDHQQLLIAYPCAVLYGGFALITIY 264

GO:0000139 "Golgi membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JIM5	YIPF7_MOUSE	No assigned EC number	0.3389	0.9233	0.9015	yes	no
Q5E9E8	YIPF5_BOVIN	No assigned EC number	0.3139	0.8387	0.8093	yes	no
Q8N8F6	YIPF7_HUMAN	No assigned EC number	0.3472	0.9233	0.8178	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00090172 SubName- Full=Putative uncharacterized protein; (250 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
COG5080	227	COG5080, YIP1, Rab GTPase interacting factor, Golg	7e-27
pfam04893	171	pfam04893, Yip1, Yip1 domain	0.002

>gnl|CDD|227412 COG5080, YIP1, Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]

 Score =  103 bits (258), Expect = 7e-27
 Identities = 51/172 (29%), Positives = 93/172 (54%), Gaps = 4/172 (2%)

Query: 78  EEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQ 136
           + PLL+ELGI+   I  K+  +L PF      +    DL GP++  L + LF  LAGK  
Sbjct: 58  DPPLLEELGINFGHIKSKSDDVLGPFDNKAFDILADCDLWGPLIFILLYSLFLSLAGKSH 117

Query: 137 FGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGA 196
           FG I G  +  ++ L+++  +L  +N  +   +  S++GY +LP+V  +  S+ L +   
Sbjct: 118 FGYIYGISLFGTLSLHLLLRLLGHKN--ISFFSTISILGYSLLPLVFNSLVSIILGRILI 175

Query: 197 IRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 248
           + + V A+F++W+  A++ ++ S        R L+ Y   L Y +F++++ F
Sbjct: 176 LGYVVVALFLIWSTYAASGVLKSKLQ-LSNKRLLVVYPLLLFYNVFAIIIKF 226

Length = 227

>gnl|CDD|218316 pfam04893, Yip1, Yip1 domain

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 30/160 (18%)

Query: 85  LGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQ-------- 136
           +   P + +++ +    P            L   ++  L+  L  LLA  L         
Sbjct: 1   VLTDPSEAFRRIREEPPPR--------APWLPLLLLALLTLLLGLLLALLLGWLLGSGET 52

Query: 137 -------------FGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVI 183
                         G  LG ++   +   ++  +     G+       S+VGY +LP+++
Sbjct: 53  IQGLTGGSALGSIIGGYLGLLLGLFLLALLLHLIAKLFGGDGSFKQTLSLVGYALLPLIL 112

Query: 184 LAAFSLFL-PQGGAIRFAVSAVFVLWAARASTNLMVSLAD 222
               +L L    GA+   V  + ++W+       + +   
Sbjct: 113 GGLIALLLSLLLGALLLLVGLLALIWSLYLLYLGLKAAHG 152

The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterized by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG3103	249	consensus Rab GTPase interacting factor, Golgi mem	100.0
COG5080	227	YIP1 Rab GTPase interacting factor, Golgi membrane	100.0
KOG2946	234	consensus Uncharacterized conserved protein [Funct	100.0
KOG3114	290	consensus Uncharacterized conserved protein [Funct	99.33
PF04893	172	Yip1: Yip1 domain; InterPro: IPR006977 This entry	98.44
KOG3094	284	consensus Predicted membrane protein [Function unk	97.32
PF03878	240	YIF1: YIF1; InterPro: IPR005578 This family includ	97.09
COG5197	284	Predicted membrane protein [Function unknown]	95.16
PF06930	170	DUF1282: Protein of unknown function (DUF1282); In	80.9

>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-63  Score=439.30  Aligned_cols=232  Identities=42%  Similarity=0.775  Sum_probs=207.1

Q ss_pred             CCCcccCCCCC----C-----CCCCCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCCCCC--CCCCCCCCCCCCCCCCC
Q 025760            7 VPPVVFPSGGN----P-----TTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPAS--YGGPISTSTSAGGSASF   75 (248)
Q Consensus         7 ~p~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~g~~~~~~--~~g~~~~~~~~g~~~~~   75 (248)
                      .|+...|.-+|    +     .+..|.||||+|+.+.||+++.     .+.+.+++++++.  ++++++ +..+.| +++
T Consensus         6 ~~~~~~~tn~~~d~s~~~q~~a~~d~~qqs~~p~~~~qP~~~~-----~g~~~~~~~a~t~~~~~~~~~-G~~a~~-~~~   78 (249)
T KOG3103|consen    6 MPPANTPTNGNYDYSGFGQPYAGFDNEQQSRVPPSYAQPPVPY-----LGQFFIPSAAATGALPAQPFG-GTIASG-NDF   78 (249)
T ss_pred             CCccccCcccccCCCCcCCcccccchhhhccCCCCccCCCcCC-----CCcccccccccccccccCCCC-Cccccc-cCC
Confidence            56666666664    1     1556789999999999999877     4456777765542  556664 445522 899


Q ss_pred             CCCCcchhhhccCHHHHHhcccceecccc-CCCCCCCCCcchhhHHHHHHHHHHHHhhccceeeeeeehhHHHHHHHHHH
Q 025760           76 DDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVV  154 (248)
Q Consensus        76 ~~DePLleeLgiD~~~I~~Kl~~VL~P~~-~~~~~l~d~DLwGPL~f~l~la~~L~l~gk~~Fg~Iygi~~~Gsi~ly~l  154 (248)
                      |||||||||||||++|||+|+++||+|+| .+.++++|.||||||+||++|+++|+++||.||||||||+.+||+.+|++
T Consensus        79 edEpPLLEELgInf~hI~~KT~~VLnP~r~~~q~i~~d~DlaGPlvf~L~f~~flLl~gKi~FgyIygi~~~gsl~iy~L  158 (249)
T KOG3103|consen   79 EDEPPLLEELGINFDHIKQKTRAVLNPFRSADQSIMKDTDLAGPLVFCLLFGLFLLLAGKIHFGYIYGISLLGSLSIYFL  158 (249)
T ss_pred             CCCCchHHHhCCCHHHHHHHHhheecccccCceEEecCcccccchHHHHHHHHHHHhcCceEEEEEeeeHHHHHHHHHHH
Confidence            99999999999999999999999999999 55889999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEehhhh
Q 025760          155 FNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAYA  234 (248)
Q Consensus       155 l~LL~~~~~~isf~q~~siLGYcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aas~~~~~~~~~~~~rr~Li~YP  234 (248)
                      +|+|+.+  |++|.+|+|++||||+|+|++|.++++++.++.+|+++++++++||||+|+++++... ++++||.|++||
T Consensus       159 ~nlm~~~--nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lfv~al-~~~~~rlLiaYp  235 (249)
T KOG3103|consen  159 LNLMSNK--NVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLFVSAL-SMENQRLLVAYP  235 (249)
T ss_pred             HHHHhhc--CcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHh-hccccchhhhhH
Confidence            9999943  6999999999999999999999999999999999999999999999999999999987 899999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 025760          235 CFLIYTLFSLLVIF  248 (248)
Q Consensus       235 i~L~Y~~fa~l~iF  248 (248)
                      |+|+|..|+|+++|
T Consensus       236 ~~l~Y~~Fall~if  249 (249)
T KOG3103|consen  236 CALLYGVFALIVIF  249 (249)
T ss_pred             HHHHHhhheeEEeC
Confidence            99999999999997

>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.2e-50  Score=352.94  Aligned_cols=174  Identities=29%  Similarity=0.586  Sum_probs=163.8

Q ss_pred             CCCCCCCCcchhhhccCHHHHHhcccceecccc-CCCCCCCCCcchhhHHHHHHHHHHHHhhccceeeeeeehhHHHHHH
Q 025760           72 SASFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIF  150 (248)
Q Consensus        72 ~~~~~~DePLleeLgiD~~~I~~Kl~~VL~P~~-~~~~~l~d~DLwGPL~f~l~la~~L~l~gk~~Fg~Iygi~~~Gsi~  150 (248)
                      .|+++.|||++||+++|+++|++|+..|+.|++ .+.++++||||||||+||+++++.|+++||.||||||+++|+|.++
T Consensus        52 ~g~~p~d~pLleel~i~F~~i~~ks~~vl~p~~~~~~~i~~d~DL~gPliF~lL~sLfLsla~~shFgyiy~islfg~ls  131 (227)
T COG5080          52 RGVYPGDPPLLEELGINFGHIKSKSDDVLGPFDNKAFDILADCDLWGPLIFILLYSLFLSLAGKSHFGYIYGISLFGTLS  131 (227)
T ss_pred             cCCCCCCccHHHHhcccccccccccceeeecccccchhhhhcccccccHHHHHHHHHHHHhcccceeehhhHHHHHHHHH
Confidence            567999999999999999999999999999987 5668999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEe
Q 025760          151 LYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGL  230 (248)
Q Consensus       151 ly~ll~LL~~~~~~isf~q~~siLGYcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aas~~~~~~~~~~~~rr~L  230 (248)
                      +++++|+|+.+  |++|++++||+|||+||+|+.|+++.++++..+...+++++|.+||+|||+.++++.. +.+|+|.|
T Consensus       132 l~~~lrLl~~~--ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~~l-~l~n~~ll  208 (227)
T COG5080         132 LHLLLRLLGHK--NISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKSKL-QLSNKRLL  208 (227)
T ss_pred             HHHHHHHhccC--ceeeeehhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHH
Confidence            99999999954  5999999999999999999999999999886666677777799999999999999887 78999999


Q ss_pred             hhhhHHHHHHHHHHhhcC
Q 025760          231 IAYACFLIYTLFSLLVIF  248 (248)
Q Consensus       231 i~YPi~L~Y~~fa~l~iF  248 (248)
                      ++|||+|||.+|+|+++|
T Consensus       209 v~Ypl~LFY~~fa~ii~f  226 (227)
T COG5080         209 VVYPLLLFYNVFAIIIKF  226 (227)
T ss_pred             HHHHHHHHHhhheEEEEe
Confidence            999999999999999876

>KOG2946 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.8e-49  Score=346.53  Aligned_cols=172  Identities=23%  Similarity=0.418  Sum_probs=159.1

Q ss_pred             CCCCCCCCCCcchhhhccCHHHHHhcccceeccc---cCCCCCCCCCcchhhHHHHHHHHHHHHhhcc----ceeeeeee
Q 025760           70 GGSASFDDEEPLLDELGIHPDQIWKKTKSILNPF---RVNPTVHKGSDLSGPIVLYLSFGLFQLLAGK----LQFGVILG  142 (248)
Q Consensus        70 g~~~~~~~DePLleeLgiD~~~I~~Kl~~VL~P~---~~~~~~l~d~DLwGPL~f~l~la~~L~l~gk----~~Fg~Iyg  142 (248)
                      .+++++++|||+|||++||+++|+.|+++|++|+   +.+.+.+||||||||+.+|+.+|++|++++.    .+|+.+|.
T Consensus        52 ~~~e~dTldePv~~tlkrD~~~I~~kl~~Vl~P~py~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~~~~~~vFs~vf~  131 (234)
T KOG2946|consen   52 EVNEEDTLDEPVLETLKRDLRAIGSKLKHVLYPHPYFEDKGQLLRDWDLWGPLFFCVFLALILSLSGSVKSASVFAVVFA  131 (234)
T ss_pred             ccCCCCcccchHHHHHHHHHHHHHhceEEEEccCCCcccccceeecccccchhHHHHHHHHHHHhhcCcccchhHHHHHH
Confidence            5688999999999999999999999999999998   3577899999999999999999999999763    47999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHH-HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025760          143 WIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAF-SLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLA  221 (248)
Q Consensus       143 i~~~Gsi~ly~ll~LL~~~~~~isf~q~~siLGYcL~Plvi~sli-~lf~~~~~~~r~il~~~~v~WSt~aas~~~~~~~  221 (248)
                      ++|+|.+++|+|.|+|||+   |+|+|++|++||||||+++.|++ +++-.+ .++|+++..++.+||+|+|..+++...
T Consensus       132 i~wfG~~vvtln~kLLGgn---Is~fQsl~IlGYCLfPl~v~ali~~~~~~l-~~lr~vv~~~~~~WSsyaa~~~l~~~~  207 (234)
T KOG2946|consen  132 ILWFGAVVVTLNIKLLGGN---ISFFQSLCILGYCLFPLVVAALIICLFRDL-FFLRLVVTSIGLAWSSYAAMGFLSISQ  207 (234)
T ss_pred             HHHHHHHHHHHHHHHhCCc---eeEEeehhhhhhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence            9999999999999999975   99999999999999999999854 555554 899999999999999999999999987


Q ss_pred             CCCCCeeEehhhhHHHHHHHHHHhhc
Q 025760          222 DGGEEHRGLIAYACFLIYTLFSLLVI  247 (248)
Q Consensus       222 ~~~~~rr~Li~YPi~L~Y~~fa~l~i  247 (248)
                      +  .+||.|++||+||||+.++||++
T Consensus       208 ~--~~kk~LavYPvFL~y~~~s~lii  231 (234)
T KOG2946|consen  208 L--PRKKLLAVYPVFLFYFSVSWLII  231 (234)
T ss_pred             c--ccccceehhhHHHHHHhhheEEE
Confidence            4  99999999999999999999975

>KOG3114 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=1.7e-11  Score=112.68  Aligned_cols=162  Identities=14%  Similarity=0.203  Sum_probs=111.9

Q ss_pred             chhhhccCHHHHHhcccceecccc-CCCCCCCCCcchhhHHHHHHHHHHHHhhcc-----------------------ce
Q 025760           81 LLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGK-----------------------LQ  136 (248)
Q Consensus        81 LleeLgiD~~~I~~Kl~~VL~P~~-~~~~~l~d~DLwGPL~f~l~la~~L~l~gk-----------------------~~  136 (248)
                      ...-+++|+.++.+|++.++.|++ ..+++-+++|||||+++|.++.+.+..+|.                       ..
T Consensus        80 yq~fFdVDt~qV~~Rl~~SliP~~~~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~g~~~g~~f~~v~sa  159 (290)
T KOG3114|consen   80 YQPFFDVDTAQVRKRLKESLIPRNYVRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLKGTAYGYDFGLVTSA  159 (290)
T ss_pred             hccccCCCHHHHHHHHHHhcCCccccccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhccccceeeecccchHHHH
Confidence            444599999999999999999955 466677889999999999999999887641                       22


Q ss_pred             eeeeeehhHHHHHHHHHHHHHhcC-CC-CccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Q 025760          137 FGVILGWIVVSSIFLYVVFNMLAG-RN-GNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARAST  214 (248)
Q Consensus       137 Fg~Iygi~~~Gsi~ly~ll~LL~~-~~-~~isf~q~~siLGYcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aas  214 (248)
                      +.+||++.|+..+.++-.++..+- +. ...+++..+|+.||+++....+.+++ .++. .+++++++..+..=|..-=.
T Consensus       160 a~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~-iv~~-~~~~wvl~~~~~~~S~~~L~  237 (290)
T KOG3114|consen  160 ATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLW-IVPS-SMVQWVLVGTALGLSGTFLA  237 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHH-hccH-HHHHHHHHHHHHHHhHHHHH
Confidence            446899999999999999988872 11 23677889999999999999944444 4666 67888776555544433222


Q ss_pred             HHHHhhcCCC--CCeeEehhhhHHHHHHHHHH
Q 025760          215 NLMVSLADGG--EEHRGLIAYACFLIYTLFSL  244 (248)
Q Consensus       215 ~~~~~~~~~~--~~rr~Li~YPi~L~Y~~fa~  244 (248)
                      +-+....-..  .++-.+.+.=+.++-+.++.
T Consensus       238 ~~l~p~~~~~~~~~~a~~~iv~ivllh~lla~  269 (290)
T KOG3114|consen  238 GTLWPAVRLDGILHFAFLLIVEIVLLHLLLAL  269 (290)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence            2222221011  23344555555555555554

>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain

Probab=98.44  E-value=3.8e-07  Score=74.57  Aligned_cols=134  Identities=18%  Similarity=0.293  Sum_probs=96.0

Q ss_pred             cCHHHHHhcccceeccccCCCCCCCCCcchhhHHHHHHHHHHHHhhc-----------------cceeee-----e--ee
Q 025760           87 IHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAG-----------------KLQFGV-----I--LG  142 (248)
Q Consensus        87 iD~~~I~~Kl~~VL~P~~~~~~~l~d~DLwGPL~f~l~la~~L~l~g-----------------k~~Fg~-----I--yg  142 (248)
                      +|+++..+|+++--.       ..+++|++++++.++.+...+...+                 ...++.     +  ..
T Consensus         3 ~~P~~~f~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   75 (172)
T PF04893_consen    3 FSPREFFRRLRESPR-------ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILI   75 (172)
T ss_pred             cCHHHHHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            566666666554222       4577999999999988888766552                 111111     1  24


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025760          143 WIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQ-GGAIRFAVSAVFVLWAARASTNLMVSLA  221 (248)
Q Consensus       143 i~~~Gsi~ly~ll~LL~~~~~~isf~q~~siLGYcL~Plvi~sli~lf~~~-~~~~r~il~~~~v~WSt~aas~~~~~~~  221 (248)
                      ...+.+..++...|+++++   .++.++.|+.|||..|.++..++..+... .......+..++.+|+.+.....+.+..
T Consensus        76 ~~~i~~~~~~~~~~~~gg~---~~~~~~~~~~~ya~~P~~~~~~~~~~~~~~~~~~~~~~~~l~~iw~~~l~~~gl~~~~  152 (172)
T PF04893_consen   76 GWFILALILHLIAKLFGGK---GSFKETFSVVGYALIPLLLGSLISIILSLFFGPLSLLVIILFSIWSAYLLVIGLREVH  152 (172)
T ss_pred             HHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556667778888889876   78999999999999999999999876543 2224556678899999999999999988


Q ss_pred             CCCCCeeEeh
Q 025760          222 DGGEEHRGLI  231 (248)
Q Consensus       222 ~~~~~rr~Li  231 (248)
                       +.+.+|...
T Consensus       153 -~~~~~ka~~  161 (172)
T PF04893_consen  153 -RLSRGKAFL  161 (172)
T ss_pred             -CCChhHHHH
Confidence             555555433

The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane

>KOG3094 consensus Predicted membrane protein [Function unknown]

Probab=97.32  E-value=0.0014  Score=60.07  Aligned_cols=141  Identities=17%  Similarity=0.227  Sum_probs=92.6

Q ss_pred             CCCCCCCCcchhhhccCHHHHHhcccceeccccC--------------CCCCCCCCcchhhHHHHHHHHHHHHh----hc
Q 025760           72 SASFDDEEPLLDELGIHPDQIWKKTKSILNPFRV--------------NPTVHKGSDLSGPIVLYLSFGLFQLL----AG  133 (248)
Q Consensus        72 ~~~~~~DePLleeLgiD~~~I~~Kl~~VL~P~~~--------------~~~~l~d~DLwGPL~f~l~la~~L~l----~g  133 (248)
                      .++.-.++-+.-.+.+|-.=+.+|++-++.|+..              .++.++.+||.=|++-.+++-++.-+    .|
T Consensus        77 ~~k~~~~~~l~yYF~Vdn~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg  156 (284)
T KOG3094|consen   77 LGKYVSVPKLKYYFAVDNAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQG  156 (284)
T ss_pred             hhhhccCccceEEEEechHHHhhhheEEEeeecCcchhhhhcccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhcc
Confidence            5666677778888999999999999999999741              13477889999999988877665432    34


Q ss_pred             c-------ceeeeeeehhHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHh-cchhhHHHHHHHHH
Q 025760          134 K-------LQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFL-PQGGAIRFAVSAVF  205 (248)
Q Consensus       134 k-------~~Fg~Iygi~~~Gsi~ly~ll~LL~~~~~~isf~q~~siLGYcL~Plvi~sli~lf~-~~~~~~r~il~~~~  205 (248)
                      +       +.|+--..++++-. +++.+..++-+.++..+..-.+|--||-..+++++.+..++. +.       .-.+.
T Consensus       157 ~FsPE~Lg~~~s~al~~v~le~-l~l~l~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~k~~~~~~-------~yyi~  228 (284)
T KOG3094|consen  157 RFSPEALGILASKALAWVILEV-LLLKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLTKLLFGPY-------GYYIA  228 (284)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHheecccCCcchhHhhhhcccchHHHHHHHHhhheecch-------hHHHH
Confidence            3       23333333333333 333333333332235888899999999999999998887543 22       22334


Q ss_pred             HHHHHHHHHHHHHhh
Q 025760          206 VLWAARASTNLMVSL  220 (248)
Q Consensus       206 v~WSt~aas~~~~~~  220 (248)
                      .+|-+.|-.-|+.+.
T Consensus       229 ~~yt~~a~gvFLlRS  243 (284)
T KOG3094|consen  229 LAYTYLAFGVFLLRS  243 (284)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            556655555555554

>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins

Probab=97.09  E-value=0.0022  Score=58.20  Aligned_cols=135  Identities=18%  Similarity=0.285  Sum_probs=98.9

Q ss_pred             CcchhhhccCHHHHHhcccceeccccC--------------CCCCCCCCcchhhHHHHHHHHHHHHh----hcc------
Q 025760           79 EPLLDELGIHPDQIWKKTKSILNPFRV--------------NPTVHKGSDLSGPIVLYLSFGLFQLL----AGK------  134 (248)
Q Consensus        79 ePLleeLgiD~~~I~~Kl~~VL~P~~~--------------~~~~l~d~DLwGPL~f~l~la~~L~l----~gk------  134 (248)
                      ..+.-.+.+|-.=|.+|++-++.|+..              .++..+.+||.=|++-++++-++-.+    +|+      
T Consensus        37 ~~lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~L  116 (240)
T PF03878_consen   37 SSLKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGLILGLQGRFSPELL  116 (240)
T ss_pred             ccceeeEECCHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            357778999999999999999999751              13466789999999999988776544    243      


Q ss_pred             -ceeeeeeehhHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 025760          135 -LQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARAS  213 (248)
Q Consensus       135 -~~Fg~Iygi~~~Gsi~ly~ll~LL~~~~~~isf~q~~siLGYcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aa  213 (248)
                       ..++.-.+++.+=.+++.+.+.+|+.+ +++++.-.+|..||-..++++..++.++...  ..-    -+..+|.+.+.
T Consensus       117 g~~~s~al~~~~lEv~i~k~~~y~l~~~-~~~~~lDlvay~GYKfv~ii~~~l~~~l~~~--~~y----y~~~ly~~~a~  189 (240)
T PF03878_consen  117 GIQASSALVWWFLEVLIIKLGLYLLNIS-SSLPILDLVAYSGYKFVGIILTLLASLLFGS--WVY----YIALLYTSFAN  189 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHhhcchHHHHHHHHHHHHHccc--HHH----HHHHHHHHHHH
Confidence             334455666666666677777788763 3599999999999999999988888776432  222    34667777776


Q ss_pred             HHHHHhh
Q 025760          214 TNLMVSL  220 (248)
Q Consensus       214 s~~~~~~  220 (248)
                      .-|+.+.
T Consensus       190 ~~Fl~Rs  196 (240)
T PF03878_consen  190 AFFLLRS  196 (240)
T ss_pred             HHHHHHH
Confidence            6666543

It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.

>COG5197 Predicted membrane protein [Function unknown]

Probab=95.16  E-value=0.53  Score=42.81  Aligned_cols=117  Identities=15%  Similarity=0.201  Sum_probs=78.1

Q ss_pred             CCCCCCCCcchhhhccCHHHHHhcccceeccccC-------C-------CCCCCCCcchhhHHHHHHHHHHHHh-hc-c-
Q 025760           72 SASFDDEEPLLDELGIHPDQIWKKTKSILNPFRV-------N-------PTVHKGSDLSGPIVLYLSFGLFQLL-AG-K-  134 (248)
Q Consensus        72 ~~~~~~DePLleeLgiD~~~I~~Kl~~VL~P~~~-------~-------~~~l~d~DLwGPL~f~l~la~~L~l-~g-k-  134 (248)
                      ++.--.-.++-..+.+|-+-+.+|++-+|.|++.       |       ++.++.+|++=|++-.+++-++.-. .| | 
T Consensus        74 ~g~~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~nsPdmY~P~M~fvtyILl~~~~~GL~g  153 (284)
T COG5197          74 TGNAASSQQISTYFQVSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQGLKG  153 (284)
T ss_pred             hcccccccceeEEEEechHhHHhhhheEEeecccchhhhccCCCCCCCchhhcCCccccchHHHHHHHHHHHHHHhhccc
Confidence            3444455678889999999999999999999751       2       2458889999999988888776533 22 2 


Q ss_pred             ----ceeeeeeehhHHHHHHHHHHHHHhcC----CCCccceeeeeeecccchHHHHHHHHHHH
Q 025760          135 ----LQFGVILGWIVVSSIFLYVVFNMLAG----RNGNLDLHTCTSVVGYCMLPVVILAAFSL  189 (248)
Q Consensus       135 ----~~Fg~Iygi~~~Gsi~ly~ll~LL~~----~~~~isf~q~~siLGYcL~Plvi~sli~l  189 (248)
                          ..||+.+.-...-. ++-+++--+|+    .+..-++...+|-.||=..|++++.+.-.
T Consensus       154 ~F~PE~lg~~~s~~~a~v-~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~qL~k~  215 (284)
T COG5197         154 SFNPEDLGYKLSSTLAFV-CVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQLLKN  215 (284)
T ss_pred             CCCHHHhhHHHHHHHHHH-HHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHHHhhh
Confidence                34555443322222 22222333343    11124467788999999999999998764

>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length

Probab=80.90  E-value=9  Score=32.27  Aligned_cols=57  Identities=9%  Similarity=0.134  Sum_probs=41.7

Q ss_pred             cceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 025760          165 LDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGG  224 (248)
Q Consensus       165 isf~q~~siLGYcL~Plvi~sli~lf~~~~~~~r~il~~~~v~WSt~aas~~~~~~~~~~  224 (248)
                      -++-++.-..+|...|+.+..+++...+  .++......++..|+.+--.--..... +.
T Consensus        94 ~s~~~~~~~a~y~~tPl~L~~i~~~~~~--~~l~~~~~~~~~~~~~~Lly~Gv~~~~-~i  150 (170)
T PF06930_consen   94 PSYKKCLAFAAYAATPLFLGGIVNLYPS--LWLTLLVGLIALIYSVYLLYLGVPIFM-NI  150 (170)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-Cc
Confidence            7788999999999999999999887654  344445566677787766555555555 44

The function of is unknown although a number of the members are thought to be putative membrane proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00