Citrus Sinensis ID: 025764

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MQLSTNFTASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRSGPSI
Secondary Structure (PSIPRED)
cccccEEEccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHcccccccccccccEEcccccccHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccccccccHHHHHHccccccEEEEEEEccccccccHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccccccccccccccccccccccHHHHccEEccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEcccccccccccccccccHHHHHHHHcccccHHHHcccccccccccccccccEccccccccHHHHHHHHHHHHHHccccccEEcccccccEEEEcccccccccHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mqlstnftaspfrsqnhlfnnlsptsflhkslflsrptktlqnllfsnpkssqkkLLRTSTINASLLEAPLLWAGRLCVYYALLKAglagsqanplvsdlesggvtgsegadlgFSKWLEnikgkpdkeaadkrklvskwhpttkgtlrrnyrvpsksEGRRLLKAIASLlsdddhftdatshkgcqirrenahgesvccNNVRalfdelptphlvveitpfpagpltekdyvkAEKLERVLRSGPSI
Flexible Loop (DISEMBL)
mqlstnftaspfrsqnHLFNNLSPTSFLHKSLFLSRPTKTLQNLLfsnpkssqkklLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKgkpdkeaadkrklvskwhpttkgtlrrnyrvpskseGRRLLKAIASllsdddhftDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFpagpltekdyvkaeklervlrsgpsi
Low Complexity Region (SEG)
MQLSTNFTASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRSGPSI
Disordered region (IsUnstruct)
******************FNNL*PTSFLHKSLFLSRPTKTLQNLLF**********LRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQ********************LGFSKWLE*******************************************LKAIASLLS***HFT****HKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYV***************
Disordered Region (DISOPRED)
***********FRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSN************TINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLE******SEGADLGFSKWL********************WHPTTKGTL***************LKAIASLLSDDDHFTDATSHKGCQI**E*AHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRS****
Disordered Region (DISEMBL)
********ASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRSGPSI
Disordered Region (DISPRO)
*QLSTNFTASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQK**LRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLV*************ADLGFSKWLENIKGKPDK*****RKLVSKWHPT*KGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLSTNFTASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRSGPSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
255580074	256	conserved hypothetical protein [Ricinus	0.943	0.914	0.752	8e-99
297815360	248	hypothetical protein ARALYDRAFT_484754 [	0.927	0.927	0.719	8e-92
225435688	230	PREDICTED: uncharacterized protein LOC10	0.870	0.939	0.747	3e-91
224076012	256	predicted protein [Populus trichocarpa]	0.995	0.964	0.709	7e-91
18406975	249	uncharacterized protein [Arabidopsis tha	0.971	0.967	0.683	1e-90
356527046	258	PREDICTED: uncharacterized protein LOC10	0.899	0.864	0.716	5e-89
449462577	258	PREDICTED: uncharacterized protein LOC10	0.870	0.837	0.739	9e-88
356569804	258	PREDICTED: uncharacterized protein LOC10	0.911	0.875	0.699	5e-87
388499404	247	unknown [Lotus japonicus]	0.745	0.748	0.843	2e-86
388507382	248	unknown [Lotus japonicus]	0.745	0.745	0.843	2e-86

>gi|255580074|ref|XP_002530870.1| conserved hypothetical protein [Ricinus communis] gi|223529559|gb|EEF31510.1| conserved hypothetical protein [Ricinus communis]

 Score =  365 bits (938), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 185/246 (75%), Positives = 206/246 (83%), Gaps = 12/246 (4%)

Query: 12  FRSQNHLFNN---LSPTSFLHKSLFLS------RPTKTLQNLLFSNPKSSQKKLLRTSTI 62
           F+S N  +NN   ++PTS L KSLF +       PTKTL+  L+   +S   +   T+T 
Sbjct: 14  FQSNN--YNNTKIINPTSLLPKSLFPTFDTNGNHPTKTLKRFLYLTKRSFATRKTVTTT- 70

Query: 63  NASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENI 122
           NASLLE P+LWAGRLC++YALLK+GLAGS+ NPLVS L+  G +  E  DLGFSKWLENI
Sbjct: 71  NASLLETPVLWAGRLCIFYALLKSGLAGSKTNPLVSGLDGDGESAVESGDLGFSKWLENI 130

Query: 123 KGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATS 182
           +GKPDKEAAD+RKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHF +ATS
Sbjct: 131 QGKPDKEAADRRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFIEATS 190

Query: 183 HKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVL 242
           HKGCQIRRE+AHGESVCCNNVRALFDELPTPHLVVEIT FPAGPLTEKDYVKAEKLERVL
Sbjct: 191 HKGCQIRRESAHGESVCCNNVRALFDELPTPHLVVEITAFPAGPLTEKDYVKAEKLERVL 250

Query: 243 RSGPSI 248
           RSGPSI
Sbjct: 251 RSGPSI 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815360|ref|XP_002875563.1| hypothetical protein ARALYDRAFT_484754 [Arabidopsis lyrata subsp. lyrata] gi|297321401|gb|EFH51822.1| hypothetical protein ARALYDRAFT_484754 [Arabidopsis lyrata subsp. lyrata]

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 174/242 (71%), Positives = 201/242 (83%), Gaps = 12/242 (4%)

Query: 12  FRSQNHL--FNNLSPTSFL-HKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLE 68
           FRSQ+ +   +N +P+ FL  KS+F    +K   +  F  PK      +   +  ASLLE
Sbjct: 14  FRSQSTIPTLSNSNPSCFLLPKSIFPG--SKLTLHRFFRYPKK-----ISNGSARASLLE 66

Query: 69  APLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGV-TGSEGADLGFSKWLENIKG-KP 126
            P+LWAGR+CV+YAL+KAG AGS++NP+VS L+SGGV    +GADLGFSKWL+NIKG KP
Sbjct: 67  TPVLWAGRICVFYALVKAGFAGSKSNPIVSGLDSGGVDVEDDGADLGFSKWLQNIKGNKP 126

Query: 127 DKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGC 186
           DK+AADKRKLVSKWHPTTKGTLRRNYR+PSKSEG RLLKAIASLLSDDDHF DATSHKGC
Sbjct: 127 DKDAADKRKLVSKWHPTTKGTLRRNYRIPSKSEGNRLLKAIASLLSDDDHFRDATSHKGC 186

Query: 187 QIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRSGP 246
           QIRRE+AHG+SVCCNNVRALFDELPTPHLVVEITPFPAGPLTE DY+KAEKLER+LRSGP
Sbjct: 187 QIRRESAHGQSVCCNNVRALFDELPTPHLVVEITPFPAGPLTENDYLKAEKLERILRSGP 246

Query: 247 SI 248
           +I
Sbjct: 247 NI 248

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435688|ref|XP_002285688.1| PREDICTED: uncharacterized protein LOC100250156 [Vitis vinifera] gi|297746432|emb|CBI16488.3| unnamed protein product [Vitis vinifera]

 Score =  340 bits (873), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 172/230 (74%), Positives = 188/230 (81%), Gaps = 14/230 (6%)

Query: 23  SPTSFLHKSLFLS----RPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLC 78
           SP+S      FL      PTKTL  L    P         T + +ASLLEAP+LWA R+C
Sbjct: 11  SPSSVNSSQTFLPGFGISPTKTLVYLRSRTP---------TGSTHASLLEAPVLWASRIC 61

Query: 79  VYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVS 138
           V+YALLKAGLAGSQANP VSDLES G  G    DLGFSKWLE+++  P+KEA+DKRKLVS
Sbjct: 62  VFYALLKAGLAGSQANPFVSDLESDG-NGDGAGDLGFSKWLESLQRNPEKEASDKRKLVS 120

Query: 139 KWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESV 198
           KWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHF DA+SHKGCQIRRE+AHGESV
Sbjct: 121 KWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFIDASSHKGCQIRRESAHGESV 180

Query: 199 CCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRSGPSI 248
           CCNNVRALFDELPTPHL+VEITPFPAGPLTE DYVKAEKLE+VLRSGPS+
Sbjct: 181 CCNNVRALFDELPTPHLIVEITPFPAGPLTENDYVKAEKLEKVLRSGPSV 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076012|ref|XP_002304872.1| predicted protein [Populus trichocarpa] gi|118488609|gb|ABK96117.1| unknown [Populus trichocarpa] gi|222842304|gb|EEE79851.1| predicted protein [Populus trichocarpa]

 Score =  339 bits (869), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 181/255 (70%), Positives = 208/255 (81%), Gaps = 8/255 (3%)

Query: 1   MQLSTNFTASPFRSQNHL-FNN-LSPTSFLHKSLF--LSRPTKTLQNLLFSNPKSSQKKL 56
           + L      SPF+S+    FN+ +  T+ L KSLF     P+KT   L F N  +  +KL
Sbjct: 3   LSLVQTIYTSPFQSKTLTRFNSVIKSTTLLPKSLFPTFDCPSKTFSRLFF-NGNTRDRKL 61

Query: 57  LRTS--TINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGA-DL 113
              +  T++ASL+EAP+LW GRLC++YALLKAGLAGS+ANPLVS L+ GGV G   + DL
Sbjct: 62  TAGASFTVHASLIEAPVLWVGRLCIFYALLKAGLAGSEANPLVSGLDGGGVGGGAESGDL 121

Query: 114 GFSKWLENIKGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSD 173
           GFSKW+E I+GKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEG+R LKAIA+LLS+
Sbjct: 122 GFSKWIEAIQGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGQRRLKAIAALLSE 181

Query: 174 DDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYV 233
           DD+F DATSHKGCQIRRE+AHGESVCCNNVRALFDELPTPHL+VEIT FPAGPLTEKDYV
Sbjct: 182 DDYFVDATSHKGCQIRRESAHGESVCCNNVRALFDELPTPHLLVEITAFPAGPLTEKDYV 241

Query: 234 KAEKLERVLRSGPSI 248
           KAEKLERVLRSGPSI
Sbjct: 242 KAEKLERVLRSGPSI 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406975|ref|NP_566858.1| uncharacterized protein [Arabidopsis thaliana] gi|9294365|dbj|BAB02262.1| unnamed protein product [Arabidopsis thaliana] gi|15292709|gb|AAK92723.1| unknown protein [Arabidopsis thaliana] gi|21281097|gb|AAM45104.1| unknown protein [Arabidopsis thaliana] gi|332644183|gb|AEE77704.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 175/256 (68%), Positives = 206/256 (80%), Gaps = 15/256 (5%)

Query: 1   MQLS--TNFTASPFRSQNHL--FNNLSPTSFL-HKSLFLSRPTKTLQNLLFSNPKSSQKK 55
           MQLS     + S FRSQ+ +   +N +P+  L  KS+F    +K   + +F  PK     
Sbjct: 1   MQLSLVQVSSVSNFRSQSTIPTLSNSNPSCLLLQKSIFPG--SKLTLHRIFRYPKK---- 54

Query: 56  LLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVT--GSEGADL 113
            +   +  ASLLE P+LWAGR+CV+YAL+KAG AGS++NP+VS L++GGV     +GADL
Sbjct: 55  -ISNGSTRASLLETPILWAGRICVFYALVKAGFAGSKSNPIVSGLDTGGVDVEYDDGADL 113

Query: 114 GFSKWLENIKG-KPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLS 172
           GFSKWL+NIKG KPDK+AADKRKLVSKWHPTTKGTLRRNYR+PSK+EG RLLKAIASLLS
Sbjct: 114 GFSKWLQNIKGNKPDKDAADKRKLVSKWHPTTKGTLRRNYRIPSKAEGNRLLKAIASLLS 173

Query: 173 DDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDY 232
           DDDHF DATSHKGCQIRRE+AHG+SVCCNNVRALFDELPTPHLVVEITPFPAGPLTE DY
Sbjct: 174 DDDHFRDATSHKGCQIRRESAHGQSVCCNNVRALFDELPTPHLVVEITPFPAGPLTENDY 233

Query: 233 VKAEKLERVLRSGPSI 248
           +KAEKLER+LRSG +I
Sbjct: 234 LKAEKLERILRSGANI 249

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527046|ref|XP_003532125.1| PREDICTED: uncharacterized protein LOC100785008 [Glycine max]

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 167/233 (71%), Positives = 191/233 (81%), Gaps = 10/233 (4%)

Query: 25  TSFLHKSLFLSRPTKTLQNLLFSNPKSS----QKKLLRTSTINASLLEAPLLWAGRLCVY 80
            + L KSLF    +  L+ L+F +  SS    ++  + + ++NASL+EAP+LWAGRLC++
Sbjct: 27  VTLLPKSLFPCGISLKLKGLVFWSKSSSVCGRRRVGVGSISVNASLVEAPVLWAGRLCIF 86

Query: 81  YALLKAGLAGSQANPLVSDLESGGVTGSEGA-----DLGFSKWLENIKGKPDKEAADKRK 135
           YALLKAGLAGSQANPLVSDLE G  T  E A     DLGFSKW + I GKP KEAA+ RK
Sbjct: 87  YALLKAGLAGSQANPLVSDLEIGD-TNDESAPAAATDLGFSKWAQTILGKPAKEAANGRK 145

Query: 136 LVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHG 195
           LVSKWHPTTKGTLRRNYRVPSK EGRRLLKAIASLLSDDDHF DATSHKGCQIRRE+AHG
Sbjct: 146 LVSKWHPTTKGTLRRNYRVPSKLEGRRLLKAIASLLSDDDHFVDATSHKGCQIRRESAHG 205

Query: 196 ESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRSGPSI 248
           ESVCCNNVRALFDELPTPH++VEITPFPAGPL + DY+KAEKLE+VLRS PS+
Sbjct: 206 ESVCCNNVRALFDELPTPHIIVEITPFPAGPLNDNDYIKAEKLEKVLRSSPSV 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462577|ref|XP_004149017.1| PREDICTED: uncharacterized protein LOC101215704 [Cucumis sativus] gi|449502194|ref|XP_004161570.1| PREDICTED: uncharacterized protein LOC101227576 [Cucumis sativus]

 Score =  328 bits (842), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 165/223 (73%), Positives = 182/223 (81%), Gaps = 7/223 (3%)

Query: 33  FLSRPTKTLQNLLFSNPKSSQKKLLRT----STINASLLEAPLLWAGRLCVYYALLKAGL 88
           F S P   L   L  +   S K L  T    S+  ASL+EAP+LWAGRLC++YALL+AGL
Sbjct: 36  FPSHPKNALTTFLHFHKTRSNKSLSNTFNSPSSTRASLIEAPILWAGRLCIFYALLRAGL 95

Query: 89  AGSQANPLVSDLE---SGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVSKWHPTTK 145
           AGSQ+NPL+SDL+    G   G   +DLGFSKWLE+++GKP  EA DKRKLVSKWHPTTK
Sbjct: 96  AGSQSNPLISDLDLSYGGSSDGESSSDLGFSKWLESVRGKPVDEAVDKRKLVSKWHPTTK 155

Query: 146 GTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRA 205
           GTLRRNYRVPSKSEGRRLLKAI SLLSDDDHF DATSHKGCQIRRE+AHGESVCCNNVRA
Sbjct: 156 GTLRRNYRVPSKSEGRRLLKAIMSLLSDDDHFVDATSHKGCQIRRESAHGESVCCNNVRA 215

Query: 206 LFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRSGPSI 248
           LFDELPTPHL+VEITPFPAGPL E DY KAEKLERVLRSGPS+
Sbjct: 216 LFDELPTPHLIVEITPFPAGPLNENDYTKAEKLERVLRSGPSV 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569804|ref|XP_003553086.1| PREDICTED: uncharacterized protein LOC100801846 [Glycine max]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 165/236 (69%), Positives = 188/236 (79%), Gaps = 10/236 (4%)

Query: 23  SPTSFLHKSLFLSRPTKTLQNLLFSNPKSS-------QKKLLRTSTINASLLEAPLLWAG 75
           SP + L KSLF    +  L+ L+F    SS       ++  + + ++NASL+EAP+LWAG
Sbjct: 23  SPVTLLPKSLFPCGISLKLKGLVFWCKSSSVCGRRRRRRVRVGSISVNASLVEAPVLWAG 82

Query: 76  RLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGA---DLGFSKWLENIKGKPDKEAAD 132
           RL ++YALLKAGLAGSQANPLV DLE G       A   DLGFSKW + I GKP KEAA+
Sbjct: 83  RLFIFYALLKAGLAGSQANPLVLDLEIGDTNDESAAAATDLGFSKWAQAILGKPPKEAAN 142

Query: 133 KRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRREN 192
            RKLVSKWHPTTKGTLRRNYRVPSK EGRRLLKAIASLLSDDDHF DATSHKGCQIRRE+
Sbjct: 143 GRKLVSKWHPTTKGTLRRNYRVPSKPEGRRLLKAIASLLSDDDHFVDATSHKGCQIRRES 202

Query: 193 AHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRSGPSI 248
           AHGESVCCNNVRALFDELPTPH++VEITPFPAGPL + DY+KAEKLE+VLRS PS+
Sbjct: 203 AHGESVCCNNVRALFDELPTPHIIVEITPFPAGPLNDNDYIKAEKLEKVLRSSPSV 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499404|gb|AFK37768.1| unknown [Lotus japonicus]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/185 (84%), Positives = 165/185 (89%)

Query: 64  ASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIK 123
           ASLLEAP+LWAGRLC++YALLKAGLAGS ANPLVSDLE G    +E ADLGFSKW + I 
Sbjct: 63  ASLLEAPVLWAGRLCIFYALLKAGLAGSPANPLVSDLEVGDGGIAESADLGFSKWTQAIP 122

Query: 124 GKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSH 183
           GKP KE A+  K VSKWHPTTKGTLRRNYRV SKSEGRRLLKAIASLLSDDDHF DATSH
Sbjct: 123 GKPAKEVANGGKFVSKWHPTTKGTLRRNYRVRSKSEGRRLLKAIASLLSDDDHFVDATSH 182

Query: 184 KGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLR 243
           KGCQIRRE+AHGESVCCNNVRALFDELPTPHL VEITPFPAGPLT+KDY KAEKLERVLR
Sbjct: 183 KGCQIRRESAHGESVCCNNVRALFDELPTPHLTVEITPFPAGPLTDKDYTKAEKLERVLR 242

Query: 244 SGPSI 248
           S PS+
Sbjct: 243 SSPSV 247

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507382|gb|AFK41757.1| unknown [Lotus japonicus]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/185 (84%), Positives = 165/185 (89%)

Query: 64  ASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIK 123
           ASLLEAP+LWAGRLC++YALLKAGLAGS ANPLVSDLE G    +E ADLGFSKW + I 
Sbjct: 64  ASLLEAPVLWAGRLCIFYALLKAGLAGSPANPLVSDLEVGDGGIAESADLGFSKWTQAIL 123

Query: 124 GKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSH 183
           GKP KE A+  K VSKWHPTTKGTLRRNYRV SKSEGRRLLKAIASLLSDDDHF DATSH
Sbjct: 124 GKPAKEVANGGKFVSKWHPTTKGTLRRNYRVRSKSEGRRLLKAIASLLSDDDHFVDATSH 183

Query: 184 KGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLR 243
           KGCQIRRE+AHGESVCCNNVRALFDELPTPHL VEITPFPAGPLT+KDY KAEKLERVLR
Sbjct: 184 KGCQIRRESAHGESVCCNNVRALFDELPTPHLTVEITPFPAGPLTDKDYTKAEKLERVLR 243

Query: 244 SGPSI 248
           S PS+
Sbjct: 244 SSPSV 248

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2096643	249	AT3G32930 "AT3G32930" [Arabido	0.971	0.967	0.695	1.3e-86

TAIR|locus:2096643 AT3G32930 "AT3G32930" [Arabidopsis thaliana (taxid:3702)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 178/256 (69%), Positives = 208/256 (81%)

Query:     1 MQLSTN--FTASPFRSQNHL--FNNLSPTSFL-HKSLFLSRPTKTLQNLLFSNPKSSQKK 55
             MQLS     + S FRSQ+ +   +N +P+  L  KS+F    +K   + +F  PK    K
Sbjct:     1 MQLSLVQVSSVSNFRSQSTIPTLSNSNPSCLLLQKSIFPG--SKLTLHRIFRYPK----K 54

Query:    56 LLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGS--EGADL 113
             +   ST  ASLLE P+LWAGR+CV+YAL+KAG AGS++NP+VS L++GGV     +GADL
Sbjct:    55 ISNGST-RASLLETPILWAGRICVFYALVKAGFAGSKSNPIVSGLDTGGVDVEYDDGADL 113

Query:   114 GFSKWLENIKG-KPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLS 172
             GFSKWL+NIKG KPDK+AADKRKLVSKWHPTTKGTLRRNYR+PSK+EG RLLKAIASLLS
Sbjct:   114 GFSKWLQNIKGNKPDKDAADKRKLVSKWHPTTKGTLRRNYRIPSKAEGNRLLKAIASLLS 173

Query:   173 DDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAGPLTEKDY 232
             DDDHF DATSHKGCQIRRE+AHG+SVCCNNVRALFDELPTPHLVVEITPFPAGPLTE DY
Sbjct:   174 DDDHFRDATSHKGCQIRRESAHGQSVCCNNVRALFDELPTPHLVVEITPFPAGPLTENDY 233

Query:   233 VKAEKLERVLRSGPSI 248
             +KAEKLER+LRSG +I
Sbjct:   234 LKAEKLERILRSGANI 249


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      248       248   0.00079  114 3  11 22  0.48    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  187 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.96u 0.14s 23.10t   Elapsed:  00:00:01
  Total cpu time:  22.96u 0.14s 23.10t   Elapsed:  00:00:01
  Start:  Sat May 11 01:46:55 2013   End:  Sat May 11 01:46:56 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024750001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (244 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
PRK00823	97	phhB pterin-4-alpha-carbinolamine dehydratase; Val	97.66
PF01329	95	Pterin_4a: Pterin 4 alpha carbinolamine dehydratas	97.64
cd00913	76	PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional pr	97.45
cd00914	76	PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional pr	97.37
cd00488	75	PCD_DCoH PCD_DCoH: The bifunctional protein pterin	97.34

>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated

Probab=97.66  E-value=0.00021  Score=53.65  Aligned_cols=87  Identities=22%  Similarity=0.400  Sum_probs=70.9

Q ss_pred             hhhhhhhchhcccccCccc-ceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHh
Q 025764          128 KEAADKRKLVSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRAL  206 (248)
Q Consensus       128 keaadkrklvskWhpTtKG-TLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRAL  206 (248)
                      .|.+...+-+..|.-...| .|.|.|.+++-.++..++.+||.+-.+.+|..|-+...+                     
T Consensus         9 ~ei~~~l~~l~gW~~~~~~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~---------------------   67 (97)
T PRK00823          9 EEIAELLPQLPGWTLVGDRDAIERTFKFKNFNEAFAFMNRVAEIAEEEDHHPDWFNVYN---------------------   67 (97)
T ss_pred             HHHHHHhhcCCCCeEeCCcCeEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCCEEEEcC---------------------
Confidence            3444444444789886555 699999999999999999999999999999988765543                     


Q ss_pred             hhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHH
Q 025764          207 FDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVL  242 (248)
Q Consensus       207 FDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VL  242 (248)
                             .+.|+++.--+|-||++|+.=|+|++++.
T Consensus        68 -------~V~v~l~Th~~~glT~~D~~lA~~id~~~   96 (97)
T PRK00823         68 -------RVTVTLTTHDAGGLTENDFILAAKIDALA   96 (97)
T ss_pred             -------EEEEEEEeCCCCCCCHHHHHHHHHHHHhh
Confidence                   35788988888889999999999999874

>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []

Probab=97.64  E-value=0.00011  Score=54.90  Aligned_cols=88  Identities=24%  Similarity=0.462  Sum_probs=68.9

Q ss_pred             chhhhhhhchhcccccCcccceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHh
Q 025764          127 DKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRAL  206 (248)
Q Consensus       127 ~keaadkrklvskWhpTtKGTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRAL  206 (248)
                      +.|.+..-+-...|.-...+.|.|.|+.++-.++..++..||.+-.+-+|.-|-+...+                     
T Consensus         7 ~~ei~~~L~~l~~W~~~~~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~---------------------   65 (95)
T PF01329_consen    7 EEEIAEALAELPGWKLDGGGRLERTFKFKDFAEAVEFVNRVAALAEEENHHPDISLGYN---------------------   65 (95)
T ss_dssp             HHHHHHHHHTSTTSEEETSSEEEEEEE-SSHHHHHHHHHHHHHHHHHHT---EEEEETT---------------------
T ss_pred             HHHHHHhhhcCcCCEECCCCcEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCeEecCC---------------------
Confidence            34444444445889888669999999999999999999999999999999888765322                     


Q ss_pred             hhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHH
Q 025764          207 FDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVL  242 (248)
Q Consensus       207 FDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VL  242 (248)
                             .+.|+|+---+|-||++|+.=|+++++++
T Consensus        66 -------~V~v~l~Th~~~glT~~D~~lA~~id~~~   94 (95)
T PF01329_consen   66 -------RVTVTLTTHDAGGLTEKDFILAARIDDLA   94 (95)
T ss_dssp             -------EEEEEE-BTTTTBBBHHHHHHHHHHHHHH
T ss_pred             -------cEEEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence                   37899999999999999999999999886

X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....

>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=97.45  E-value=0.00036  Score=50.29  Aligned_cols=73  Identities=21%  Similarity=0.363  Sum_probs=61.8

Q ss_pred             cccCcc-cceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhcCCCCceEEE
Q 025764          140 WHPTTK-GTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVE  218 (248)
Q Consensus       140 WhpTtK-GTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDELPtPHLvvE  218 (248)
                      |.-... +.|.|.|.+++-+++..++.+||.+-.+.+|..|.+...                            -.+.|+
T Consensus         2 W~~~~~~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~----------------------------~~V~v~   53 (76)
T cd00913           2 WELADDGLKLERTFRFKNFVEALEFVNAVGEIAEAEGHHPDLSLGW----------------------------GRVRVT   53 (76)
T ss_pred             CcCcCCCCeEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEec----------------------------cEEEEE
Confidence            554443 589999999999999999999999999999998876543                            246789


Q ss_pred             eeeCCCCCCChhhHHhHHHHHH
Q 025764          219 ITPFPAGPLTEKDYVKAEKLER  240 (248)
Q Consensus       219 ITpFPaGpltd~dy~KAekLE~  240 (248)
                      |+.-=+|-||++|+.=|.+++.
T Consensus        54 l~Th~~~glT~~D~~lA~~id~   75 (76)
T cd00913          54 WWTHSIGGLSENDFIMAAKIDA   75 (76)
T ss_pred             EEeCCCCCCCHHHHHHHHHHhc
Confidence            9777778899999999999875

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).

>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=97.37  E-value=0.00048  Score=49.81  Aligned_cols=67  Identities=18%  Similarity=0.268  Sum_probs=59.4

Q ss_pred             cceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhcCCCCceEEEeeeCCCC
Q 025764          146 GTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPAG  225 (248)
Q Consensus       146 GTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDELPtPHLvvEITpFPaG  225 (248)
                      +.|.|.|.+++-+++..++.+||.+-.+.+|..|.+...|                            .+.|+++.--+|
T Consensus         9 ~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHPdi~~~~~----------------------------~V~v~l~Thd~~   60 (76)
T cd00914           9 DAIHKSFKFKDFNEAFGFMTRVALEAEKMNHHPEWFNVYN----------------------------KVDITLTTHDAG   60 (76)
T ss_pred             CeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCEEEecc----------------------------EEEEEEEeCCCC
Confidence            5799999999999999999999999999999988765544                            256889888889


Q ss_pred             CCChhhHHhHHHHHH
Q 025764          226 PLTEKDYVKAEKLER  240 (248)
Q Consensus       226 pltd~dy~KAekLE~  240 (248)
                      -||++|+.=|.++++
T Consensus        61 glT~~D~~lA~~id~   75 (76)
T cd00914          61 GLTERDIKLAKFIEK   75 (76)
T ss_pred             CcCHHHHHHHHHHhc
Confidence            999999999999875

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon

>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=97.34  E-value=0.00059  Score=48.83  Aligned_cols=69  Identities=25%  Similarity=0.416  Sum_probs=60.3

Q ss_pred             ccceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhcCCCCceEEEeeeCCC
Q 025764          145 KGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVVEITPFPA  224 (248)
Q Consensus       145 KGTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDELPtPHLvvEITpFPa  224 (248)
                      .+.|.|.|..++-.++.+++.+||.+-.+.+|.-|.+...+                            .+.|+|+.-.+
T Consensus         7 ~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~~----------------------------~V~v~l~Th~~   58 (75)
T cd00488           7 GDALERTFKFKDFKEAIAFVNRVAELAEALNHHPDISNVYN----------------------------KVTVTLTTHDA   58 (75)
T ss_pred             CCcEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEeee----------------------------EEEEEEEeCCC
Confidence            36799999999999999999999999999999988876433                            46799988788


Q ss_pred             CCCChhhHHhHHHHHHH
Q 025764          225 GPLTEKDYVKAEKLERV  241 (248)
Q Consensus       225 Gpltd~dy~KAekLE~V  241 (248)
                      |-||++|+.=|++++++
T Consensus        59 ~glt~~D~~lA~~id~~   75 (75)
T cd00488          59 GGLTENDFILAAKIDAL   75 (75)
T ss_pred             CCCCHHHHHHHHHHhcC
Confidence            88999999999999863

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
2ebb_A	101	Pterin-4-alpha-carbinolamine dehydratase; coenzyme	97.07
1ru0_A	105	DCOH-like protein dcohm; alpha and beta structure,	96.92
2v6u_A	104	Pterin-4A-carbinolamine dehydratase; lyase, enzyme	96.86
3jst_A	97	Putative pterin-4-alpha-carbinolamine dehydratase;	96.74
3hxa_A	104	Pterin-4-alpha-carbinolamine dehydratase; alpha an	96.71
1usm_A	80	DCOH, hepatocyte nuclear factor 1-alpha; transcrip	96.7

>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}

Probab=97.07  E-value=0.0014  Score=49.13  Aligned_cols=88  Identities=17%  Similarity=0.296  Sum_probs=69.8

Q ss_pred             hhhhhhchhcccccCcccceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhh
Q 025764          129 EAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFD  208 (248)
Q Consensus       129 eaadkrklvskWhpTtKGTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFD  208 (248)
                      |.+..-+-+..|.....+.|+|.|+.++-.++..++.+||.+-...||.-|-+...+                       
T Consensus         7 ei~~~L~~l~gW~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~-----------------------   63 (101)
T 2ebb_A            7 EVQALLEKADGWKLADERWIVKKYRFQDYLQGIEFVRRIAAISENANHHPFISIDYK-----------------------   63 (101)
T ss_dssp             HHHHHHHTSTTCEEETTTEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCEEEEETT-----------------------
T ss_pred             HHHHHhhcCCCCeECCCCCEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCC-----------------------
Confidence            333333334578876443499999999999999999999999999999887654322                       


Q ss_pred             cCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHHhh
Q 025764          209 ELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRS  244 (248)
Q Consensus       209 ELPtPHLvvEITpFPaGpltd~dy~KAekLE~VLrs  244 (248)
                           .+.|+++.--+|-||++|+.=|.|++.+...
T Consensus        64 -----~V~v~l~THd~gGlt~~D~~lA~~id~l~~~   94 (101)
T 2ebb_A           64 -----LITVKLSSWRAKGLTKLDFDLAKQYDEVYNQ   94 (101)
T ss_dssp             -----EEEEEECBTTTTBCCHHHHHHHHHHHHHHHH
T ss_pred             -----EEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence                 3678888888999999999999999998753

>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1

Probab=96.92  E-value=0.0019  Score=48.57  Aligned_cols=89  Identities=12%  Similarity=0.206  Sum_probs=70.2

Q ss_pred             chhhhhhhchh--cccccCccc-ceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccch
Q 025764          127 DKEAADKRKLV--SKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNV  203 (248)
Q Consensus       127 ~keaadkrklv--skWhpTtKG-TLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNV  203 (248)
                      +.|.+..-+-+  ..|.....+ .|+|.|+.++-.++..++.+||.+-...||.-|-+...+                  
T Consensus        12 ~~ei~~~L~~l~~~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~------------------   73 (105)
T 1ru0_A           12 AEERDQLIPGLKAAGWSELSERDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNVYN------------------   73 (105)
T ss_dssp             HHHHHHHHHHHHHTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETT------------------
T ss_pred             HHHHHHHHHhCCCCCCeEECCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCC------------------
Confidence            34444443333  579876554 799999999999999999999999998898877653221                  


Q ss_pred             HHhhhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHHh
Q 025764          204 RALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLR  243 (248)
Q Consensus       204 RALFDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VLr  243 (248)
                                .+.|+++.--+|-||++|+.=|.|++.+..
T Consensus        74 ----------~V~v~l~THd~gGlt~~D~~lA~~id~l~~  103 (105)
T 1ru0_A           74 ----------KVQITLTSHDCGGLTKRDVKLAQFIEKAAA  103 (105)
T ss_dssp             ----------EEEEEECBTTTTBCBHHHHHHHHHHHHHHT
T ss_pred             ----------EEEEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence                      367888888889999999999999999874

>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*

Probab=96.86  E-value=0.0021  Score=48.29  Aligned_cols=90  Identities=21%  Similarity=0.337  Sum_probs=71.0

Q ss_pred             chhhhhhhchhcccccCccc-ceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHH
Q 025764          127 DKEAADKRKLVSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRA  205 (248)
Q Consensus       127 ~keaadkrklvskWhpTtKG-TLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRA  205 (248)
                      +.|.+..-+-...|.....| .|+|.|+.++-.++..++..||.+-...||.-|-+...+                    
T Consensus        11 ~~ei~~~L~~l~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~--------------------   70 (104)
T 2v6u_A           11 SARLLQLHKTVPQWHLTDGHLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWYNVYN--------------------   70 (104)
T ss_dssp             CHHHHHHHTTSTTSEECGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETT--------------------
T ss_pred             HHHHHHHhhcCCCCeEeCCcCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCC--------------------
Confidence            34444444444678876433 799999999999999999999999988899877654322                    


Q ss_pred             hhhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHHhh
Q 025764          206 LFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRS  244 (248)
Q Consensus       206 LFDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VLrs  244 (248)
                              .+.|+++.--+|-||++|+.=|.+++.+...
T Consensus        71 --------~V~v~l~THd~gGlT~~D~~lA~~id~l~~~  101 (104)
T 2v6u_A           71 --------TVDVELSTHDAAGLTEKDFALAKFMDDAAKN  101 (104)
T ss_dssp             --------EEEEEECBGGGTBCCHHHHHHHHHHHHHHHT
T ss_pred             --------EEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence                    3678888888889999999999999998754

>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0

Probab=96.74  E-value=0.0024  Score=47.30  Aligned_cols=88  Identities=15%  Similarity=0.232  Sum_probs=69.1

Q ss_pred             chhhhhhhchhcccccCccc-ceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHH
Q 025764          127 DKEAADKRKLVSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRA  205 (248)
Q Consensus       127 ~keaadkrklvskWhpTtKG-TLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRA  205 (248)
                      +.|.+..-+-...|.-...| .|+|.|+.++-.++..++..||.+-...+|.-|-+..-+                    
T Consensus         8 ~~ei~~~L~~l~gW~~~~~~~~l~r~f~f~~f~~a~~f~~~Va~~Ae~~~HHPdi~~~y~--------------------   67 (97)
T 3jst_A            8 ESEMNEALRALDGWQKVDGREAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEWFNAYN--------------------   67 (97)
T ss_dssp             HHHHHHHHHTSTTCEECTTSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETT--------------------
T ss_pred             HHHHHHHhhcCCCCeEeCCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEeCC--------------------
Confidence            34444443444789877533 899999999999999999999999988888777643211                    


Q ss_pred             hhhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHH
Q 025764          206 LFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVL  242 (248)
Q Consensus       206 LFDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VL  242 (248)
                              .+.|++|.--+|-||++|+.=|.|++.+.
T Consensus        68 --------~V~v~l~THd~gGlT~~D~~lA~~id~la   96 (97)
T 3jst_A           68 --------RVDVTLATHSENGVTELDIKMARKMNAIA   96 (97)
T ss_dssp             --------EEEEEECBGGGTBCCHHHHHHHHHHHHHH
T ss_pred             --------EEEEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence                    36788888888889999999999999874

>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A

Probab=96.71  E-value=0.0035  Score=47.18  Aligned_cols=90  Identities=13%  Similarity=0.183  Sum_probs=70.7

Q ss_pred             chhhhhhhchh--cccccCc-ccceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccch
Q 025764          127 DKEAADKRKLV--SKWHPTT-KGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNV  203 (248)
Q Consensus       127 ~keaadkrklv--skWhpTt-KGTLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNV  203 (248)
                      +.|.+..-+-.  ..|.-.. .+.|+|.|+.++-.++..++.+||.+-...+|.-|-+..-                   
T Consensus        10 ~~ei~~~L~~L~~~gW~~~~~~~~l~r~f~F~~f~~a~~F~~~Va~~AE~~~HHPdi~~~y-------------------   70 (104)
T 3hxa_A           10 AEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMSRVALQAEKLDHHPEWFNVY-------------------   70 (104)
T ss_dssp             HHHHHHHSHHHHTTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEET-------------------
T ss_pred             HHHHHHHHhhCCCCCCEEecCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEeC-------------------
Confidence            34444443333  5798764 3589999999999999999999999998888877764321                   


Q ss_pred             HHhhhcCCCCceEEEeeeCCCCCCChhhHHhHHHHHHHHhh
Q 025764          204 RALFDELPTPHLVVEITPFPAGPLTEKDYVKAEKLERVLRS  244 (248)
Q Consensus       204 RALFDELPtPHLvvEITpFPaGpltd~dy~KAekLE~VLrs  244 (248)
                               -.+.|+++.--+|-||++|+.=|.|++.+..+
T Consensus        71 ---------~~V~v~l~THd~gGlT~~D~~lA~~id~la~~  102 (104)
T 3hxa_A           71 ---------NKVHITLSTHECAGLSERDINLASFIEQVAVS  102 (104)
T ss_dssp             ---------TEEEEEECBTTTTBCCHHHHHHHHHHHHHHHH
T ss_pred             ---------CEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence                     14678888888899999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1usma_	80	Pterin-4a-carbinolamine dehydratase (PCD)/dimeriza	97.44
d1ru0a_	100	DcoH-like protein DCoH2 {Mouse (Mus musculus) [Tax	97.18
d1dcpa_	99	Pterin-4a-carbinolamine dehydratase (PCD)/dimeriza	96.75

>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: PCD-like
family: PCD-like
domain: DcoH-like protein DCoH2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00032  Score=50.29  Aligned_cols=78  Identities=13%  Similarity=0.242  Sum_probs=66.7

Q ss_pred             cccccCccc-ceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhcCCCCceE
Q 025764          138 SKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLV  216 (248)
Q Consensus       138 skWhpTtKG-TLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDELPtPHLv  216 (248)
                      +.|.....+ .|+|.|..++-.++...+..||.+-.+.||..|-+...                            .++.
T Consensus        20 ~gW~~~~~~~~L~r~f~f~~f~~a~~F~~~va~~ae~~~HHPdi~~~y----------------------------~~V~   71 (100)
T d1ru0a_          20 AGWSELSERDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNVY----------------------------NKVQ   71 (100)
T ss_dssp             TTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEET----------------------------TEEE
T ss_pred             CCCEEECCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEec----------------------------cEEE
Confidence            579875444 59999999999999999999999999999988865311                            2467


Q ss_pred             EEeeeCCCCCCChhhHHhHHHHHHHHh
Q 025764          217 VEITPFPAGPLTEKDYVKAEKLERVLR  243 (248)
Q Consensus       217 vEITpFPaGpltd~dy~KAekLE~VLr  243 (248)
                      |+++.--+|-||++|+.=|++++.+..
T Consensus        72 v~l~Thd~~glT~~D~~lA~~Id~~~~   98 (100)
T d1ru0a_          72 ITLTSHDCGGLTKRDVKLAQFIEKAAA   98 (100)
T ss_dssp             EEECBTTTTBCBHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCcCHHHHHHHHHHHHHHh
Confidence            899999999999999999999998864

>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: PCD-like
family: PCD-like
domain: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.75  E-value=0.0015  Score=46.59  Aligned_cols=78  Identities=14%  Similarity=0.202  Sum_probs=66.0

Q ss_pred             ccccCccc-ceecccccCChhHHHHHHHHHHHhhcCCCccccccCCccceeeecccccccccccchHHhhhcCCCCceEE
Q 025764          139 KWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKGCQIRRENAHGESVCCNNVRALFDELPTPHLVV  217 (248)
Q Consensus       139 kWhpTtKG-TLrRnYRvpSk~EGrRlLkaIaslLSdDDhFvdatsHKGCqIRREsAHgeSVCCnNVRALFDELPtPHLvv  217 (248)
                      -|.-...+ .|+|.|..++-.++...+..||.+-.+.||..|-+..                            -..+.|
T Consensus        19 GW~~~~~~~~L~r~f~F~~f~~a~~Fv~~Va~~ae~~~HHP~i~~~----------------------------y~~V~i   70 (99)
T d1dcpa_          19 GWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNV----------------------------YNKVHI   70 (99)
T ss_dssp             TCEECTTSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEE----------------------------TTEEEE
T ss_pred             CCEEEcCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCccEEEe----------------------------eeEEEE
Confidence            58776544 5999999999999999999999999999998876521                            125678


Q ss_pred             EeeeCCCCCCChhhHHhHHHHHHHHhh
Q 025764          218 EITPFPAGPLTEKDYVKAEKLERVLRS  244 (248)
Q Consensus       218 EITpFPaGpltd~dy~KAekLE~VLrs  244 (248)
                      +++.--+|-||++|+.=|++++++.-+
T Consensus        71 ~l~Thd~~glT~~D~~lA~~id~la~~   97 (99)
T d1dcpa_          71 TLSTHECAGLSERDINLASFIEQVAVS   97 (99)
T ss_dssp             EECBTTTTBCCHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988643