Citrus Sinensis ID: 025803

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MTRACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccccEEEEEcccEEHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccEEEEEEccEEEHHHHHHHHHHHHHHHHHHEHccccEEEEEccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTRACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFklfaseeddtdlsdnfivktcqrfipvttyydgnrfftnqdgmrkaTPLLLTVAVIELSDIafavdsipavfgvtrdpfivFSSNLFAILGLRSLFTLISEGmadleylqPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD
Flexible Loop (DISEMBL)
MTRACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLlslmkksd
Low Complexity Region (SEG)
MTRACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD
Disordered region (IsUnstruct)
****CIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLS******
Disordered Region (DISOPRED)
*****IRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS**********FIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKS*
Disordered Region (DISEMBL)
MTRACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD
Disordered Region (DISPRO)
*****IRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKK**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTRACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
P96554	319	Uncharacterized membrane	yes	no	0.919	0.714	0.441	3e-50
P42601	321	Inner membrane protein al	N/A	no	0.866	0.669	0.425	2e-45
Q83Q35	320	Inner membrane protein al	yes	no	0.866	0.671	0.425	2e-45
Q8FDE1	321	Inner membrane protein al	yes	no	0.866	0.669	0.425	3e-45
Q8XAJ0	321	Inner membrane protein al	N/A	no	0.866	0.669	0.425	3e-45
P60067	320	Inner membrane protein al	yes	no	0.911	0.706	0.410	8e-45
Q8Z3L5	322	Inner membrane protein al	N/A	no	0.866	0.667	0.435	1e-44
Q8ZLX2	322	Inner membrane protein al	yes	no	0.866	0.667	0.435	1e-44
Q4UK32	301	Uncharacterized membrane	yes	no	0.967	0.797	0.348	6e-40
Q1RKF1	302	Uncharacterized membrane	yes	no	0.963	0.791	0.354	7e-40

>sp|P96554|Y319_MYXXA Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus PE=3 SV=1

 Score =  198 bits (504), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 153/231 (66%), Gaps = 3/231 (1%)

Query: 16  YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
           Y++E+SLSVDN+FVFV+IF   ++P +YQ+RVL +GI  A+  R  +I  G A L RF  
Sbjct: 77  YLIEKSLSVDNIFVFVVIFSALRIPALYQHRVLFWGILSALALRAIMIFAGVAMLARFHW 136

Query: 76  VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
           +  V  G L+ +  KLF     + +  +  +++  +R IP T  +DG+ FFT ++G + A
Sbjct: 137 LIYVFGGFLIITGVKLFLQRNKEDNPEEGALMRLARRTIPSTPNFDGHHFFTVENGRKLA 196

Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
           TPLL+ + ++E SDI FA+DSIPA+F VT DPFIVF+SN+FAILGLRS+F +++  +   
Sbjct: 197 TPLLMALLLVEASDILFALDSIPAIFAVTTDPFIVFTSNIFAILGLRSMFFMLAGAVEKF 256

Query: 196 EYLQPSIAVVLGFIGCKM-ILDYFGFHISTEASLSFVATSLSAGVLLSLMK 245
            YL+  ++ VL F+G KM I+D+    +  E SLS +A  L A ++ SL+K
Sbjct: 257 SYLKVGLSAVLVFVGTKMAIIDF--VKMPPEVSLSVIAGLLGASIVASLIK 305

Myxococcus xanthus (taxid: 34)

>sp|P42601|ALX_ECOLI Inner membrane protein alx OS=Escherichia coli (strain K12) GN=alx PE=1 SV=2

 Score =  182 bits (461), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 141/216 (65%), Gaps = 1/216 (0%)

Query: 16  YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
           Y++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+  + +F+ 
Sbjct: 83  YLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDW 142

Query: 76  VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
           +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF  ++G+  A
Sbjct: 143 ILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYA 202

Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
           TPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++      
Sbjct: 203 TPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERF 262

Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
             L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q83Q35|ALX_SHIFL Inner membrane protein alx OS=Shigella flexneri GN=alx PE=3 SV=1

 Score =  182 bits (461), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 141/216 (65%), Gaps = 1/216 (0%)

Query: 16  YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
           Y++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+  + +F+ 
Sbjct: 83  YLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDW 142

Query: 76  VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
           +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF  ++G+  A
Sbjct: 143 ILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYA 202

Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
           TPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++      
Sbjct: 203 TPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERF 262

Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
             L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297

Shigella flexneri (taxid: 623)

>sp|Q8FDE1|ALX_ECOL6 Inner membrane protein alx OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=alx PE=3 SV=1

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 141/216 (65%), Gaps = 1/216 (0%)

Query: 16  YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
           Y++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+  + +F+ 
Sbjct: 83  YLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDW 142

Query: 76  VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
           +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF  ++G+  A
Sbjct: 143 ILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYA 202

Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
           TPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++      
Sbjct: 203 TPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERF 262

Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
             L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|Q8XAJ0|ALX_ECO57 Inner membrane protein alx OS=Escherichia coli O157:H7 GN=alx PE=3 SV=1

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 141/216 (65%), Gaps = 1/216 (0%)

Query: 16  YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
           Y++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+  + +F+ 
Sbjct: 83  YLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDW 142

Query: 76  VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
           +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF  ++G+  A
Sbjct: 143 ILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYA 202

Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
           TPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++      
Sbjct: 203 TPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERF 262

Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
             L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297

Escherichia coli O157:H7 (taxid: 83334)

>sp|P60067|ALX_PHOLL Inner membrane protein alx OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=alx PE=3 SV=1

 Score =  180 bits (457), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 148/229 (64%), Gaps = 3/229 (1%)

Query: 16  YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
           Y+LE++L+VDN+FV++++F YF +P   Q RVL YG+ GAIV R  +I  G+  + +F  
Sbjct: 83  YLLEKALAVDNVFVWLMLFSYFAIPANLQRRVLIYGVLGAIVLRTVMIFAGSWLVSQFSW 142

Query: 76  VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
           +  +    LL +  K+   +EDD+ + D   V+  +  I +T    G RFF  + G+  A
Sbjct: 143 ILYLFGLFLLVTGVKMALVKEDDSPIGDKPFVRWLKAHIRITDNLHGERFFVKEKGLLYA 202

Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
           TPL+L + ++E+SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++      
Sbjct: 203 TPLILVLILVEISDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAEKF 262

Query: 196 EYLQPSIAVVLGFIGCKM-ILDYFGFHISTEASLSFVATSLSAGVLLSL 243
             L+  ++V+L FIG KM I+D+  +HI    SL  VA+ L+  +++++
Sbjct: 263 TMLKYGLSVILAFIGIKMLIIDF--YHIPIGGSLGAVASILAVTMIINV 309

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

>sp|Q8Z3L5|ALX_SALTI Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 141/216 (65%), Gaps = 1/216 (0%)

Query: 16  YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
           Y++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT  + +FE 
Sbjct: 83  YLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGTWLITQFEW 142

Query: 76  VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
           +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T   +   FF  ++G+  A
Sbjct: 143 LLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFVRKNGLLYA 202

Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
           TPLLL + ++E SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L+S      
Sbjct: 203 TPLLLVLIMVEFSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLSGVAERF 262

Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
             L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAISLGVV 297

Salmonella typhi (taxid: 90370)

>sp|Q8ZLX2|ALX_SALTY Inner membrane protein alx OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alx PE=3 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 141/216 (65%), Gaps = 1/216 (0%)

Query: 16  YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
           Y++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT  + +FE 
Sbjct: 83  YLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGTWLITQFEW 142

Query: 76  VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
           +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T   +   FF  ++G+  A
Sbjct: 143 LLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFVRKNGLLYA 202

Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
           TPLLL + ++E SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L+S      
Sbjct: 203 TPLLLVLIMVEFSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLSGVAERF 262

Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
             L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAISLGVV 297

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|Q4UK32|Y1252_RICFE Uncharacterized membrane protein RF_1252 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_1252 PE=3 SV=2

 Score =  164 bits (414), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/241 (34%), Positives = 151/241 (62%), Gaps = 1/241 (0%)

Query: 7   RQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG 66
               E Y  +++E+++S+DN+FV  +IF++FK+P  YQ+RVL +GI G I+FR  +I  G
Sbjct: 58  EHAREYYTCFLIEKAMSLDNIFVISIIFQFFKIPGKYQHRVLFFGIIGVIIFRAIMIYGG 117

Query: 67  TATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFF 126
           T  + +F  +  + A IL+ +  K F       D+ +++I K+  + + +T   +G++F 
Sbjct: 118 TILINKFAWLLYIFAVILIATGIKTFYVSHKTFDIQNSYIYKSIVKNLNITPNLEGDKFV 177

Query: 127 TNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFT 186
             ++     TPL +++ +IE  D+ FA+DSIPA+F +T D +I+++SN+FAILGLR+LF 
Sbjct: 178 VKRNNKLYFTPLFISLVLIEAIDLVFAIDSIPAIFAITNDVYIIYTSNIFAILGLRALFF 237

Query: 187 LISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKK 246
            ++E +    Y++ S+A++L FIG K+ + ++   I    SL    T L  G++ S+++K
Sbjct: 238 CLAEIVERFSYIKYSLALILIFIGFKIFIHHY-IAIPAYVSLIVTITLLLFGIIASIIRK 296

Query: 247 S 247
           +
Sbjct: 297 N 297

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q1RKF1|Y082_RICBR Uncharacterized membrane protein RBE_0082 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0082 PE=3 SV=1

 Score =  164 bits (414), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 152/240 (63%), Gaps = 1/240 (0%)

Query: 8   QTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 67
            T E Y  +++E+++S+DN+FV  +IF++FK+P  YQ+RVL +GI G I FR  +I  G 
Sbjct: 59  STREYYTCFLIEKAMSLDNIFVISIIFQFFKIPQKYQHRVLFFGIIGVIAFRAVMIYGGI 118

Query: 68  ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 127
             + +F  +  + A IL+ +  K F       D+ ++++ K+  +++ VT   +G++FF 
Sbjct: 119 ILINKFSWLLYIFAVILIATGVKTFYVSHKTFDIQNSYLYKSIIKYLNVTPNLEGDKFFV 178

Query: 128 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 187
            ++     TPL +++ +IE  D+ FA+DSIPA+F +T D +I+++SN+FAILGLR+LF  
Sbjct: 179 TRNKKLYVTPLFISLILIEAIDLVFAIDSIPAIFAITNDAYIIYTSNIFAILGLRALFFC 238

Query: 188 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKS 247
           ++E +    Y++ S+A++L FIG K+ + ++   I    SL+   T L  G+  S+++K+
Sbjct: 239 LAEIVERFSYIKYSLALILIFIGIKIFIHHY-IAIPAYISLTVTITLLLLGIFASVIRKN 297

Rickettsia bellii (strain RML369-C) (taxid: 336407)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
224068600	372	predicted protein [Populus trichocarpa]	0.979	0.653	0.876	1e-117
356536907	363	PREDICTED: uncharacterized membrane prot	0.971	0.663	0.834	1e-111
356548192	352	PREDICTED: uncharacterized membrane prot	0.971	0.684	0.825	1e-110
297741505	365	unnamed protein product [Vitis vinifera]	0.979	0.665	0.827	1e-110
225439789	389	PREDICTED: uncharacterized membrane prot	0.979	0.624	0.827	1e-110
9759380	344	unnamed protein product [Arabidopsis tha	0.987	0.712	0.828	1e-105
18416778	384	TerC integral membrane domain-containing	0.987	0.638	0.828	1e-105
21592518	384	transmembrane transport protein-like pro	0.987	0.638	0.824	1e-104
449448697	362	PREDICTED: uncharacterized membrane prot	0.979	0.671	0.782	1e-104
297807259	374	PDE149 [Arabidopsis lyrata subsp. lyrata	0.987	0.655	0.816	1e-103

>gi|224068600|ref|XP_002326155.1| predicted protein [Populus trichocarpa] gi|222833348|gb|EEE71825.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/243 (87%), Positives = 228/243 (93%)

Query: 6   IRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL 65
           + +  E +  YILEQSLSVDNLFVFVLIFKYFKVP+MYQNRVLSYGIAGAI+FRLSLILL
Sbjct: 130 VGKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPLMYQNRVLSYGIAGAIIFRLSLILL 189

Query: 66  GTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRF 125
           GTATLQRFEAVNL LA ILL+SSFKLFA+EEDD+DLSDNFIVKTCQRFIPVT+ YDGN+F
Sbjct: 190 GTATLQRFEAVNLFLATILLYSSFKLFATEEDDSDLSDNFIVKTCQRFIPVTSNYDGNKF 249

Query: 126 FTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLF 185
            T +DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSL+
Sbjct: 250 ITREDGLWKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLY 309

Query: 186 TLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMK 245
           TLISEGMADLEYLQPSIA+VLGFIGCKMILD+ GFHISTEASL FVATSL AGVLLSLMK
Sbjct: 310 TLISEGMADLEYLQPSIAIVLGFIGCKMILDFMGFHISTEASLGFVATSLGAGVLLSLMK 369

Query: 246 KSD 248
           KSD
Sbjct: 370 KSD 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536907|ref|XP_003536974.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/241 (83%), Positives = 225/241 (93%)

Query: 8   QTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 67
           +  E +  YILEQSLSVDNLFVFVLIF YFKVPV YQNRVLSYGIAGA+VFRL+LIL+GT
Sbjct: 123 KASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVAYQNRVLSYGIAGAVVFRLTLILIGT 182

Query: 68  ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 127
           ATLQRFEAVNL+LA ILLFSSFKLFASEED++DLSDNF+VKTCQ+FIPVTTYYDGNRF T
Sbjct: 183 ATLQRFEAVNLLLAAILLFSSFKLFASEEDESDLSDNFVVKTCQKFIPVTTYYDGNRFIT 242

Query: 128 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 187
           N DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPF+VF+SNLFAILGLRSLF +
Sbjct: 243 NLDGVWKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFVVFTSNLFAILGLRSLFLI 302

Query: 188 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKS 247
           ISEGM++L+YLQPSIA+VLGF+G KMILDYFGFH+STEASL+FVA+SL+ GV+LSL  KS
Sbjct: 303 ISEGMSELKYLQPSIAIVLGFVGVKMILDYFGFHVSTEASLAFVASSLTIGVVLSLANKS 362

Query: 248 D 248
           D
Sbjct: 363 D 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548192|ref|XP_003542487.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/241 (82%), Positives = 224/241 (92%)

Query: 8   QTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 67
           +  E +  YILEQSLSVDNLFVFVLIF YFKVPV YQNRVLSYGIAGA+VFRL++IL+GT
Sbjct: 112 KASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVTYQNRVLSYGIAGAVVFRLTIILIGT 171

Query: 68  ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 127
           ATLQRFEAVNL+LA ILL+SS KLFASEED++DLSDNF+VKTCQ+FIPVTTYYDGNRF T
Sbjct: 172 ATLQRFEAVNLLLAAILLYSSSKLFASEEDESDLSDNFVVKTCQKFIPVTTYYDGNRFIT 231

Query: 128 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 187
           N DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPF+VF+SNLFAILGLRSLF +
Sbjct: 232 NLDGVWKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFVVFTSNLFAILGLRSLFLI 291

Query: 188 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKS 247
           ISEGM++L+YLQPSIAVVLGFIG KMILDYFG H+STEASL+FVA+SL+ GV+LSL+ KS
Sbjct: 292 ISEGMSELKYLQPSIAVVLGFIGVKMILDYFGLHVSTEASLAFVASSLTIGVVLSLVNKS 351

Query: 248 D 248
           D
Sbjct: 352 D 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741505|emb|CBI32637.3| unnamed protein product [Vitis vinifera]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/243 (82%), Positives = 221/243 (90%)

Query: 6   IRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL 65
           + +  E +  Y+LEQSLSVDNLFVFVLIFKYF+VP MYQ RVLSYGIAGAI+FRLSLILL
Sbjct: 123 VGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFQVPTMYQGRVLSYGIAGAIIFRLSLILL 182

Query: 66  GTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRF 125
           GTATLQRFEAVNL+ A ILLFSSFKLFA++ED+TDLS+NF+VKTCQ+FIPVT  YDGN F
Sbjct: 183 GTATLQRFEAVNLLFAAILLFSSFKLFAADEDETDLSNNFVVKTCQKFIPVTANYDGNLF 242

Query: 126 FTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLF 185
            T QDG+ KATPLLLTV VIELSDIAFAVDSIPAVFGVTRDPFIVF+SNLFAILGLRSL+
Sbjct: 243 VTIQDGVWKATPLLLTVVVIELSDIAFAVDSIPAVFGVTRDPFIVFTSNLFAILGLRSLY 302

Query: 186 TLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMK 245
           TLISE M++LEYLQPSI VVLGFIGCKMI D+FGFH+STEASL FVATSL AGVLLSLMK
Sbjct: 303 TLISESMSELEYLQPSIGVVLGFIGCKMISDFFGFHVSTEASLGFVATSLGAGVLLSLMK 362

Query: 246 KSD 248
           KSD
Sbjct: 363 KSD 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439789|ref|XP_002276398.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Vitis vinifera]

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/243 (82%), Positives = 221/243 (90%)

Query: 6   IRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL 65
           + +  E +  Y+LEQSLSVDNLFVFVLIFKYF+VP MYQ RVLSYGIAGAI+FRLSLILL
Sbjct: 147 VGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFQVPTMYQGRVLSYGIAGAIIFRLSLILL 206

Query: 66  GTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRF 125
           GTATLQRFEAVNL+ A ILLFSSFKLFA++ED+TDLS+NF+VKTCQ+FIPVT  YDGN F
Sbjct: 207 GTATLQRFEAVNLLFAAILLFSSFKLFAADEDETDLSNNFVVKTCQKFIPVTANYDGNLF 266

Query: 126 FTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLF 185
            T QDG+ KATPLLLTV VIELSDIAFAVDSIPAVFGVTRDPFIVF+SNLFAILGLRSL+
Sbjct: 267 VTIQDGVWKATPLLLTVVVIELSDIAFAVDSIPAVFGVTRDPFIVFTSNLFAILGLRSLY 326

Query: 186 TLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMK 245
           TLISE M++LEYLQPSI VVLGFIGCKMI D+FGFH+STEASL FVATSL AGVLLSLMK
Sbjct: 327 TLISESMSELEYLQPSIGVVLGFIGCKMISDFFGFHVSTEASLGFVATSLGAGVLLSLMK 386

Query: 246 KSD 248
           KSD
Sbjct: 387 KSD 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759380|dbj|BAB10031.1| unnamed protein product [Arabidopsis thaliana]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/245 (82%), Positives = 222/245 (90%)

Query: 3   RACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSL 62
           +  + +  E +  YILEQSLSVDNLFVFVL+FKYFKVP+MYQN+VL+YGIAGAIVFR +L
Sbjct: 97  KEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPLMYQNKVLTYGIAGAIVFRFTL 156

Query: 63  ILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDG 122
           ILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDLSDNFIVKTCQRFIPVT+ YDG
Sbjct: 157 ILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSSYDG 216

Query: 123 NRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLR 182
           NRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIV +SNLFAILGLR
Sbjct: 217 NRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVLTSNLFAILGLR 276

Query: 183 SLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLS 242
           SL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+FGFHISTEASL  VA SLS GVLLS
Sbjct: 277 SLYTLISEGMDELEYLQPSIAVVLGFIGVKMILDFFGFHISTEASLGVVALSLSTGVLLS 336

Query: 243 LMKKS 247
           L  KS
Sbjct: 337 LTNKS 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416778|ref|NP_568257.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana] gi|332004383|gb|AED91766.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/245 (82%), Positives = 222/245 (90%)

Query: 3   RACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSL 62
           +  + +  E +  YILEQSLSVDNLFVFVL+FKYFKVP+MYQN+VL+YGIAGAIVFR +L
Sbjct: 137 KEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPLMYQNKVLTYGIAGAIVFRFTL 196

Query: 63  ILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDG 122
           ILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDLSDNFIVKTCQRFIPVT+ YDG
Sbjct: 197 ILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSSYDG 256

Query: 123 NRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLR 182
           NRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIV +SNLFAILGLR
Sbjct: 257 NRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVLTSNLFAILGLR 316

Query: 183 SLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLS 242
           SL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+FGFHISTEASL  VA SLS GVLLS
Sbjct: 317 SLYTLISEGMDELEYLQPSIAVVLGFIGVKMILDFFGFHISTEASLGVVALSLSTGVLLS 376

Query: 243 LMKKS 247
           L  KS
Sbjct: 377 LTNKS 381

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592518|gb|AAM64468.1| transmembrane transport protein-like protein [Arabidopsis thaliana]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/245 (82%), Positives = 221/245 (90%)

Query: 3   RACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSL 62
           +  + +  E +  YILEQSLSVDNLFVFVL+FKYFKVP+MYQN+VL+YGIAGAIVFR +L
Sbjct: 137 KEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPLMYQNKVLTYGIAGAIVFRFTL 196

Query: 63  ILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDG 122
           ILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDLSDNFIVKTCQRFIPVT+ YDG
Sbjct: 197 ILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSSYDG 256

Query: 123 NRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLR 182
           NRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFI  +SNLFAILGLR
Sbjct: 257 NRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIGLTSNLFAILGLR 316

Query: 183 SLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLS 242
           SL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+FGFHISTEASL  VA SLS GVLLS
Sbjct: 317 SLYTLISEGMDELEYLQPSIAVVLGFIGVKMILDFFGFHISTEASLGVVALSLSTGVLLS 376

Query: 243 LMKKS 247
           L  KS
Sbjct: 377 LTNKS 381

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448697|ref|XP_004142102.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Cucumis sativus]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/244 (78%), Positives = 218/244 (89%), Gaps = 1/244 (0%)

Query: 6   IRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL 65
           + +  E +  Y+LEQSLSVDNLFVFVLIFKYFKVP  YQNRVL+YGI+GAIVFRL++ILL
Sbjct: 119 VGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGISGAIVFRLTIILL 178

Query: 66  GTATLQRFEAVNLVLAGILLFSSFKLFAS-EEDDTDLSDNFIVKTCQRFIPVTTYYDGNR 124
           G ATLQRFEAVNL+LA ILLFSSF+LFAS EEDD DLSDNF+VKTCQ+ IPVT  YDG+R
Sbjct: 179 GAATLQRFEAVNLLLAAILLFSSFQLFASNEEDDGDLSDNFVVKTCQQLIPVTATYDGDR 238

Query: 125 FFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSL 184
           FFT Q+G++KATPLLLT+AVIELSDIAFAVDSIPAVFGVTRDPFIV +SN FAILGLRSL
Sbjct: 239 FFTLQEGVKKATPLLLTIAVIELSDIAFAVDSIPAVFGVTRDPFIVITSNFFAILGLRSL 298

Query: 185 FTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLM 244
           F L+++GM++LEYLQPSI VVL FIG KMILD+FGFH+ TEASL FVA SLS GVLLSL+
Sbjct: 299 FILVADGMSELEYLQPSIGVVLAFIGSKMILDFFGFHVPTEASLGFVAISLSTGVLLSLL 358

Query: 245 KKSD 248
           KK+D
Sbjct: 359 KKAD 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807259|ref|XP_002871513.1| PDE149 [Arabidopsis lyrata subsp. lyrata] gi|297317350|gb|EFH47772.1| PDE149 [Arabidopsis lyrata subsp. lyrata]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/245 (81%), Positives = 220/245 (89%)

Query: 3   RACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSL 62
           +  + +  E +  YILEQSLSVDNLFVFVL+FKYFKVP MYQN+VL+YGIAGAIVFR +L
Sbjct: 127 KEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPPMYQNKVLTYGIAGAIVFRFTL 186

Query: 63  ILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDG 122
           ILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDLSDNFIVKTCQRFIPVT+ YDG
Sbjct: 187 ILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSSYDG 246

Query: 123 NRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLR 182
           NRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIV +SNLFAILGLR
Sbjct: 247 NRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVLTSNLFAILGLR 306

Query: 183 SLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLS 242
           SL+TLISEGM +LEYLQPSIAVVLGFIG KMILD+FGFH+STEASL  VA SL  GV+LS
Sbjct: 307 SLYTLISEGMDELEYLQPSIAVVLGFIGFKMILDFFGFHVSTEASLGVVALSLGTGVVLS 366

Query: 243 LMKKS 247
           L  KS
Sbjct: 367 LTNKS 371

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2177053	384	PDE149 "PIGMENT DEFECTIVE 149"	0.975	0.630	0.838	1.1e-101
UNIPROTKB|Q74EV4	311	GSU0855 "Membrane protein, Ter	0.935	0.745	0.424	3e-46
TIGR_CMR|GSU_0855	311	GSU_0855 "membrane protein, Te	0.935	0.745	0.424	3e-46
UNIPROTKB|Q74CV1	314	GSU1570 "Membrane protein, Ter	0.915	0.722	0.441	7.9e-46
TIGR_CMR|GSU_1570	314	GSU_1570 "membrane protein, Te	0.915	0.722	0.441	7.9e-46
UNIPROTKB|P42601	321	alx "predicted membrane-bound	0.862	0.666	0.433	2.4e-44
UNIPROTKB|Q3ZA17	321	DET0184 "Membrane protein, Ter	0.923	0.713	0.4	8.1e-44
TIGR_CMR|DET_0184	321	DET_0184 "membrane protein, Te	0.923	0.713	0.4	8.1e-44
UNIPROTKB|Q8EG61	325	SO_1747 "Tellurium ion resista	0.923	0.704	0.421	2e-40
TIGR_CMR|SO_1747	325	SO_1747 "membrane protein, put	0.923	0.704	0.421	2e-40

TAIR|locus:2177053 PDE149 "PIGMENT DEFECTIVE 149" [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 203/242 (83%), Positives = 221/242 (91%)

Query:     6 IRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL 65
             + +  E +  YILEQSLSVDNLFVFVL+FKYFKVP+MYQN+VL+YGIAGAIVFR +LILL
Sbjct:   140 VGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPLMYQNKVLTYGIAGAIVFRFTLILL 199

Query:    66 GTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRF 125
             GTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDLSDNFIVKTCQRFIPVT+ YDGNRF
Sbjct:   200 GTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSSYDGNRF 259

Query:   126 FTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLF 185
             FT  DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIV +SNLFAILGLRSL+
Sbjct:   260 FTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVLTSNLFAILGLRSLY 319

Query:   186 TLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMK 245
             TLISEGM +LEYLQPSIAVVLGFIG KMILD+FGFHISTEASL  VA SLS GVLLSL  
Sbjct:   320 TLISEGMDELEYLQPSIAVVLGFIGVKMILDFFGFHISTEASLGVVALSLSTGVLLSLTN 379

Query:   246 KS 247
             KS
Sbjct:   380 KS 381

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

UNIPROTKB|Q74EV4 GSU0855 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 99/233 (42%), Positives = 151/233 (64%)

Query:    11 EEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 70
             E +  Y++EQSLSVDNLFVF++IF YF +  ++Q ++L +GI GA+V R   IL G   +
Sbjct:    67 EFFTGYLIEQSLSVDNLFVFIMIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELI 126

Query:    71 QRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQD 130
             +RF  +  V  GIL+ + FK+    E+  +   N IV+  ++ +P+T     +RFF  + 
Sbjct:   127 ERFHWMIYVFGGILVVTGFKMAFGGEEKIEPEKNPIVRLVRKLVPITKRIRDDRFFIKKG 186

Query:   131 GMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISE 190
             G+R ATPL L + ++E SD+ FAVDSIPAV  V+RDPFIV++SN+FAI+GLRSL+ L++ 
Sbjct:   187 GVRAATPLFLALVMVESSDLIFAVDSIPAVLAVSRDPFIVYTSNVFAIMGLRSLYYLLAN 246

Query:   191 GMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSL 243
              M    YL+  ++V+L ++G KM+L    +HI    SL  +   L+  +L S+
Sbjct:   247 VMEMFVYLKLGVSVILAYVGVKMLLVDI-YHIPIIFSLGTIVGVLAISILTSV 298

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0855 GSU_0855 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 99/233 (42%), Positives = 151/233 (64%)

Query:    11 EEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 70
             E +  Y++EQSLSVDNLFVF++IF YF +  ++Q ++L +GI GA+V R   IL G   +
Sbjct:    67 EFFTGYLIEQSLSVDNLFVFIMIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELI 126

Query:    71 QRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQD 130
             +RF  +  V  GIL+ + FK+    E+  +   N IV+  ++ +P+T     +RFF  + 
Sbjct:   127 ERFHWMIYVFGGILVVTGFKMAFGGEEKIEPEKNPIVRLVRKLVPITKRIRDDRFFIKKG 186

Query:   131 GMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISE 190
             G+R ATPL L + ++E SD+ FAVDSIPAV  V+RDPFIV++SN+FAI+GLRSL+ L++ 
Sbjct:   187 GVRAATPLFLALVMVESSDLIFAVDSIPAVLAVSRDPFIVYTSNVFAIMGLRSLYYLLAN 246

Query:   191 GMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSL 243
              M    YL+  ++V+L ++G KM+L    +HI    SL  +   L+  +L S+
Sbjct:   247 VMEMFVYLKLGVSVILAYVGVKMLLVDI-YHIPIIFSLGTIVGVLAISILTSV 298

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q74CV1 GSU1570 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 102/231 (44%), Positives = 152/231 (65%)

Query:    16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
             Y++E+SLSVDNLFVF++IF  F V    Q RVL +GI GA++ R+  I LG   L+RF+ 
Sbjct:    71 YLIEKSLSVDNLFVFIMIFTVFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQW 130

Query:    76 VNLVLAGILLFSSFKL-F-ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR 133
             +  +   +L++++ K+ F ASEE D D   N +V+  ++ +P+T    G+ FFT + G+ 
Sbjct:   131 LFYIFGAVLIYTASKMAFGASEEMDPD--KNLMVRLARKVLPMTRKIRGDWFFTRRLGLW 188

Query:   134 KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMA 193
              A+PL + + V+E SD+ FA+DSIPA+F +T DPFIV +SN+FAI+GLR+L+ L++E M 
Sbjct:   189 VASPLFMVLLVVESSDLVFALDSIPAIFAITLDPFIVLTSNVFAIMGLRALYFLLAEVMG 248

Query:   194 DLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLM 244
                YL+  I+ +L F+G KMIL   G HI    SL  +  SL   + LSL+
Sbjct:   249 MFAYLKYGISFILAFVGIKMILIMLGVHIPIAISLGVIVLSLVVAMGLSLL 299

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1570 GSU_1570 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 102/231 (44%), Positives = 152/231 (65%)

Query:    16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
             Y++E+SLSVDNLFVF++IF  F V    Q RVL +GI GA++ R+  I LG   L+RF+ 
Sbjct:    71 YLIEKSLSVDNLFVFIMIFTVFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQW 130

Query:    76 VNLVLAGILLFSSFKL-F-ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR 133
             +  +   +L++++ K+ F ASEE D D   N +V+  ++ +P+T    G+ FFT + G+ 
Sbjct:   131 LFYIFGAVLIYTASKMAFGASEEMDPD--KNLMVRLARKVLPMTRKIRGDWFFTRRLGLW 188

Query:   134 KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMA 193
              A+PL + + V+E SD+ FA+DSIPA+F +T DPFIV +SN+FAI+GLR+L+ L++E M 
Sbjct:   189 VASPLFMVLLVVESSDLVFALDSIPAIFAITLDPFIVLTSNVFAIMGLRALYFLLAEVMG 248

Query:   194 DLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLM 244
                YL+  I+ +L F+G KMIL   G HI    SL  +  SL   + LSL+
Sbjct:   249 MFAYLKYGISFILAFVGIKMILIMLGVHIPIAISLGVIVLSLVVAMGLSLL 299

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|P42601 alx "predicted membrane-bound redox modulator that is induced by high pH" [Escherichia coli K-12 (taxid:83333)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 94/217 (43%), Positives = 145/217 (66%)

Query:    16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
             Y++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+  + +F+ 
Sbjct:    83 YLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDW 142

Query:    76 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
             +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF  ++G+  A
Sbjct:   143 ILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYA 202

Query:   136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMAD- 194
             TPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++ G+A+ 
Sbjct:   203 TPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLA-GVAER 261

Query:   195 LEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
                L+  +AV+L FIG KM++  F +HI    SL  V
Sbjct:   262 FSMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q3ZA17 DET0184 "Membrane protein, TerC family" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 92/230 (40%), Positives = 139/230 (60%)

Query:    16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
             YI+E SLSVDNLFVF++IF YF +   YQ++VL +GI GAI+ R   I  G   ++    
Sbjct:    71 YIIELSLSVDNLFVFIMIFSYFCIKREYQHKVLFWGILGAIIMRAVFIAAGITLIENLSW 130

Query:    76 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
             V  +    L+++  ++   +  +     N +V    R +P+T    G+ FF  ++G + A
Sbjct:   131 VLYIFGAFLIYTGIRMVKDQNQEIHPDKNPLVNFVCRILPMTNKLHGDHFFIKENGRKLA 190

Query:   136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
             TPL+L +  IE  D+ FA+DSIPAV  +T DPFIVF+SN+FA++GLR+++  +S  +  L
Sbjct:   191 TPLILVLVTIEAMDLVFAIDSIPAVMAITLDPFIVFTSNIFAVMGLRAMYMALSGIIQKL 250

Query:   196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMK 245
              YL   +A +L F+G KM++  F  H+    SLS VA  L+  V  SL+K
Sbjct:   251 HYLHYGLAAILSFLGIKMLISEF-VHLPVALSLSVVAVILAVSVAASLLK 299

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0184 DET_0184 "membrane protein, TerC family" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 92/230 (40%), Positives = 139/230 (60%)

Query:    16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
             YI+E SLSVDNLFVF++IF YF +   YQ++VL +GI GAI+ R   I  G   ++    
Sbjct:    71 YIIELSLSVDNLFVFIMIFSYFCIKREYQHKVLFWGILGAIIMRAVFIAAGITLIENLSW 130

Query:    76 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
             V  +    L+++  ++   +  +     N +V    R +P+T    G+ FF  ++G + A
Sbjct:   131 VLYIFGAFLIYTGIRMVKDQNQEIHPDKNPLVNFVCRILPMTNKLHGDHFFIKENGRKLA 190

Query:   136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
             TPL+L +  IE  D+ FA+DSIPAV  +T DPFIVF+SN+FA++GLR+++  +S  +  L
Sbjct:   191 TPLILVLVTIEAMDLVFAIDSIPAVMAITLDPFIVFTSNIFAVMGLRAMYMALSGIIQKL 250

Query:   196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMK 245
              YL   +A +L F+G KM++  F  H+    SLS VA  L+  V  SL+K
Sbjct:   251 HYLHYGLAAILSFLGIKMLISEF-VHLPVALSLSVVAVILAVSVAASLLK 299

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q8EG61 SO_1747 "Tellurium ion resistance family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 102/242 (42%), Positives = 150/242 (61%)

Query:    16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
             Y++E+SLS+DN+FV  LIF    +P +YQ+RVL +GI G IV R  +I LG A + +++ 
Sbjct:    80 YLIEKSLSMDNVFVIALIFSSLGIPRLYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQG 139

Query:    76 VNLVLAGI-LLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDG--M 132
             V LVL G+ L+F+  K+  S ++  D+ DN   K  +  +  T      +F+   +   +
Sbjct:   140 V-LVLFGLFLIFTGIKMLFSNDEHGDIQDNKFYKWLRSKMRFTPSLHQEKFWVRGEDHQL 198

Query:   133 RK---ATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLIS 189
              K   ATPL L + ++E +D+ FAVDSIPA+F +T+DPFIV++SN+FAILGLR+L+  ++
Sbjct:   199 SKGWWATPLFLALILVETADLVFAVDSIPAIFAITQDPFIVYTSNIFAILGLRALYFALA 258

Query:   190 EGMADLEYLQPSIAVVLGFIGCKMILDYFG------FHISTEASLSFVATSLSAGVLLSL 243
               +   EYL+ +++VVL FIG K+ L YF       F I T  SL      L AGVL SL
Sbjct:   259 AMVHRFEYLKYALSVVLVFIGVKVGLVYFNHEGIVDFKIPTALSLGVTFGLLLAGVLFSL 318

Query:   244 MK 245
              K
Sbjct:   319 WK 320

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1747 SO_1747 "membrane protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 102/242 (42%), Positives = 150/242 (61%)

Query:    16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
             Y++E+SLS+DN+FV  LIF    +P +YQ+RVL +GI G IV R  +I LG A + +++ 
Sbjct:    80 YLIEKSLSMDNVFVIALIFSSLGIPRLYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQG 139

Query:    76 VNLVLAGI-LLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDG--M 132
             V LVL G+ L+F+  K+  S ++  D+ DN   K  +  +  T      +F+   +   +
Sbjct:   140 V-LVLFGLFLIFTGIKMLFSNDEHGDIQDNKFYKWLRSKMRFTPSLHQEKFWVRGEDHQL 198

Query:   133 RK---ATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLIS 189
              K   ATPL L + ++E +D+ FAVDSIPA+F +T+DPFIV++SN+FAILGLR+L+  ++
Sbjct:   199 SKGWWATPLFLALILVETADLVFAVDSIPAIFAITQDPFIVYTSNIFAILGLRALYFALA 258

Query:   190 EGMADLEYLQPSIAVVLGFIGCKMILDYFG------FHISTEASLSFVATSLSAGVLLSL 243
               +   EYL+ +++VVL FIG K+ L YF       F I T  SL      L AGVL SL
Sbjct:   259 AMVHRFEYLKYALSVVLVFIGVKVGLVYFNHEGIVDFKIPTALSLGVTFGLLLAGVLFSL 318

Query:   244 MK 245
              K
Sbjct:   319 WK 320

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O05976	Y786_RICPR	No assigned EC number	0.3305	0.9596	0.8013	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.28.351.1 hypothetical protein (269 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
TIGR03718	302	TIGR03718, R_switched_Alx, integral membrane prote	7e-92
pfam03741	184	pfam03741, TerC, Integral membrane protein TerC fa	4e-51
COG0861	254	COG0861, TerC, Membrane protein TerC, possibly inv	2e-42
TIGR03716	215	TIGR03716, R_switched_YkoY, integral membrane prot	4e-15

>gnl|CDD|234327 TIGR03718, R_switched_Alx, integral membrane protein, TerC family

 Score =  272 bits (698), Expect = 7e-92
 Identities = 106/231 (45%), Positives = 155/231 (67%), Gaps = 1/231 (0%)

Query: 16  YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
           Y++E+SLSVDNLFVF+LIF YF VP  YQ+RVL +GI GA+V R   I  G A +++F  
Sbjct: 69  YLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFIAAGAALIEQFHW 128

Query: 76  VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
           V  +    LL++  K+    +++ D  +N +V+  +R +PVT  Y G+RFF  ++G R A
Sbjct: 129 VLYIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLVRRVLPVTDKYHGDRFFVRENGKRYA 188

Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
           TPL L + ++E +D+ FAVDSIPA+F VT+DPFIVF+SN+FAILGLR+L+ L++  +   
Sbjct: 189 TPLFLVLVLVETTDLIFAVDSIPAIFAVTQDPFIVFTSNIFAILGLRALYFLLAGLLERF 248

Query: 196 EYLQPSIAVVLGFIGCKMILDYFG-FHISTEASLSFVATSLSAGVLLSLMK 245
            YL+  +AV+L FIG KM+L     +HI    SL  +  +L+  ++ SL K
Sbjct: 249 HYLKYGLAVILVFIGVKMLLHATDVYHIPIGVSLGVIVGTLAVSIVASLWK 299

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader. Length = 302

>gnl|CDD|217707 pfam03741, TerC, Integral membrane protein TerC family

 Score =  164 bits (417), Expect = 4e-51
 Identities = 84/202 (41%), Positives = 124/202 (61%), Gaps = 21/202 (10%)

Query: 16  YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
           Y+LE SLSVDN FV  LIF+  K+P   Q + L +GI GA+V R+ LILLG+A L+ F+ 
Sbjct: 4   YLLEISLSVDNAFVIALIFR--KLPPEQQKKALFWGIIGALVLRIILILLGSALLELFDW 61

Query: 76  VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
           + L+    LL+++ KL    E+D +  +N IV+  ++ +PVT+                 
Sbjct: 62  ILLIGGAFLLYTAIKLLRENEEDDE--ENKIVRELKKVLPVTSSS--------------- 104

Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
             L L V  IEL+D+ F++DS+PA  G+T DPFIV + N+FAILGLR L  L+++ +   
Sbjct: 105 --LWLAVIQIELADLVFSLDSVPAAVGITDDPFIVITGNIFAILGLRFLAFLLAKLIERF 162

Query: 196 EYLQPSIAVVLGFIGCKMILDY 217
            YL+   A +LGFIG K++L+ 
Sbjct: 163 PYLKYLAAAILGFIGVKLLLEG 184

This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions. Length = 184

>gnl|CDD|223930 COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

 Score =  144 bits (366), Expect = 2e-42
 Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 17/235 (7%)

Query: 16  YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
            +LE  L +DN  V  ++      P   + + L  G+AGA+V R+ L+   +  L   + 
Sbjct: 24  ILLEIVLGIDNAIVIAILASKL--PPKQRKKALFIGLAGALVLRIILLASISWLLTLTQP 81

Query: 76  VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
           +  +    LL+   KL          +             +    +G  FF N    +KA
Sbjct: 82  LLYIFGLYLLWRDIKLLLGGLFLLFKA----------TKELHERLEGEEFFVNGKL-KKA 130

Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
           TP    +  IEL+D+ F++DS+ A  G+   PF++ ++ +FAIL +R    L++  +   
Sbjct: 131 TPFWGAIIQIELADLVFSLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLARLLERH 190

Query: 196 EYLQPSIAVVLGFIGCKMIL---DYFGFHI-STEASLSFVATSLSAGVLLSLMKK 246
             L+    V+L FIG K+IL    +FGFHI      L+   + L   + +S  KK
Sbjct: 191 PTLKYLALVILLFIGVKLILEGLAHFGFHIPKGYLYLAVGFSVLIELLNISARKK 245

Length = 254

>gnl|CDD|234326 TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family

 Score = 71.5 bits (176), Expect = 4e-15
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 28/199 (14%)

Query: 17  ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 76
           ILE  LS DN  V  ++ K+  +P   + + L YG+ GA VFR   + L +  L +F  +
Sbjct: 2   ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLAS-FLIKFWWI 58

Query: 77  NLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKAT 136
             + A  LL+ + K F  ++   +  +    K    F                       
Sbjct: 59  KAIGALYLLYLAIKHFRKKKKGKEDEEAEKKKAHSGFWR--------------------- 97

Query: 137 PLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLE 196
               TV  +EL DIAF+VDSI A   ++   ++VF   +  IL +R   T+  + +    
Sbjct: 98  ----TVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGIIGILIMRFAATIFVKLLERFP 153

Query: 197 YLQPSIAVVLGFIGCKMIL 215
            L+ +  +++G+IG K++L
Sbjct: 154 ELETAAFLLIGWIGVKLLL 172

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	100.0
COG0861	254	TerC Membrane protein TerC, possibly involved in t	100.0
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	100.0
PF03741	183	TerC: Integral membrane protein TerC family; Inter	100.0
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	100.0
PRK14013	338	hypothetical protein; Provisional	100.0
PF04332	294	DUF475: Protein of unknown function (DUF475); Inte	100.0
COG2899	346	Uncharacterized protein conserved in bacteria [Fun	100.0
PF01914	203	MarC: MarC family integral membrane protein; Inter	97.91
COG1971	190	Predicted membrane protein [Function unknown]	97.89
PRK10995	221	inner membrane protein; Provisional	97.78
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	97.66
PRK10739	197	putative antibiotic transporter; Provisional	97.65
PRK11469	188	hypothetical protein; Provisional	97.56
PRK11111	214	hypothetical protein; Provisional	97.43
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	97.39
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	97.37
PF03741	183	TerC: Integral membrane protein TerC family; Inter	97.26
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	97.04
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	96.95
COG0861	254	TerC Membrane protein TerC, possibly involved in t	96.94
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	96.88
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	96.87
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	96.74
PRK10958	212	leucine export protein LeuE; Provisional	96.73
PRK09304	207	arginine exporter protein; Provisional	96.03
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	95.63
PRK10229	206	threonine efflux system; Provisional	95.49
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	95.27
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	95.06
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	94.89
TIGR00948	177	2a75 L-lysine exporter.	94.87
COG4280	236	Predicted membrane protein [Function unknown]	93.73
COG2119	190	Predicted membrane protein [Function unknown]	93.29
COG1279	202	Lysine efflux permease [General function predictio	86.59

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=100.00  E-value=2.4e-71  Score=504.43  Aligned_cols=245  Identities=44%  Similarity=0.748  Sum_probs=237.6

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 025803            4 ACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI   83 (248)
Q Consensus         4 ~~~~~a~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~   83 (248)
                      .++|.+.||+|+|++|++||+||++|+++++++|++|++||||+|+||+.+|+++|++|+++++++++++||++++||+|
T Consensus        57 ~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~i~~g~~Li~~f~wi~~ifG~f  136 (302)
T TIGR03718        57 LGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFIALGAALIEQFHWVLYIFGAF  136 (302)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHHh
Q 025803           84 LLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGV  163 (248)
Q Consensus        84 Ll~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ai  163 (248)
                      |+|+|+|++++++|++|+++|+.+|+++|++|++++|||++|++|+||++.+||++.++++||.+|++||+|||||++|+
T Consensus       137 Li~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~~tpl~~vli~Ie~~DlvFslDSIpAi~ai  216 (302)
T TIGR03718       137 LLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRFFVRENGKRYATPLFLVLVLVETTDLIFAVDSIPAIFAI  216 (302)
T ss_pred             HHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCCceeeeecCceecCcHHHHHHHHHHHHHHHhhccHHHHHHh
Confidence            99999999998777777788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhhccc-ccChhHHHHHHHHHHHHHHHHH
Q 025803          164 TRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGF-HISTEASLSFVATSLSAGVLLS  242 (248)
Q Consensus       164 t~~~~li~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~~~~-~ip~~~~~~~i~~vl~~~i~~S  242 (248)
                      |+||+++++||++|++++|++|+.+++++|||||+||+++.+|+++|+||++++.|+ |+|+++|+++++++++.++++|
T Consensus       217 T~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf~~L~~~~a~iL~fIGvkmll~~~~~~~ip~~~sl~vi~~~l~~~i~~S  296 (302)
T TIGR03718       217 TQDPFIVFTSNIFAILGLRSLYFLLAGLLERFHYLKYGLAVILVFIGVKMLLHATDVYHIPIGVSLGVIVGILAVSIVAS  296 (302)
T ss_pred             hcCCeEEehHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCcCCCChhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998765 9999999999999999999999


Q ss_pred             hhccCC
Q 025803          243 LMKKSD  248 (248)
Q Consensus       243 ~~~~~~  248 (248)
                      +.++|+
T Consensus       297 l~~~~~  302 (302)
T TIGR03718       297 LWKTRK  302 (302)
T ss_pred             hcccCC
Confidence            988875

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.3e-53  Score=376.44  Aligned_cols=225  Identities=28%  Similarity=0.385  Sum_probs=198.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 025803            7 RQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLF   86 (248)
Q Consensus         7 ~~a~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~   86 (248)
                      +.+.+++|++++|++||+||++|+++++++  +||+||||+++||+.+|+++|+++++.++++++.++|..++||.+|+|
T Consensus        15 ~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~l~~~fg~~L~~   92 (254)
T COG0861          15 AAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQPLLYIFGLYLLW   92 (254)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            344699999999999999999999999995  899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccCCCCcchhHHHHHhhhhcccccccCCCceeeccCCcc-ccchHHHHHHHHHHHHHHhccchhHHHHHhcC
Q 025803           87 SSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR-KATPLLLTVAVIELSDIAFAVDSIPAVFGVTR  165 (248)
Q Consensus        87 ~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~-~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~  165 (248)
                      +++|++.+++++.       .|+.++..   ++++|++++.  +++. ..||+|.++.+||++|++||+|||||++|+|+
T Consensus        93 ~~~~ll~~~~~~~-------~k~~~~~~---~~~~~~~~~~--~~~~~~~~~f~~ai~~I~i~D~vFSlDSV~Aa~g~~~  160 (254)
T COG0861          93 RDIKLLLGGLFLL-------FKATKELH---ERLEGEEFFV--NGKLKKATPFWGAIIQIELADLVFSLDSVIAAVGMAG  160 (254)
T ss_pred             HHHHHHhcchhHH-------HHHHHHHh---hhhccccccc--cccccccCcHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            9999998765432       23333333   6788888887  3333 77999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhh---cccccChhH-HHHHHHHHHHHHHHH
Q 025803          166 DPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY---FGFHISTEA-SLSFVATSLSAGVLL  241 (248)
Q Consensus       166 ~~~li~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~---~~~~ip~~~-~~~~i~~vl~~~i~~  241 (248)
                      |++++++|+++|+++||++|+.+.+++||||+++|+++.+|+++|+||+.++   .++|+|+++ +..+...+++..+..
T Consensus       161 ~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l~~~~~~iL~~IG~kli~~~~~~~~~~ip~~~~~~~v~f~vl~~~~~~  240 (254)
T COG0861         161 HPFVMVTAVIFAILVMRFAAFLLARLLERHPTLKYLALVILLFIGVKLILEGLAHFGFHIPKGYLYLAVGFSVLIELLNI  240 (254)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHhhhccccccCCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998   667888665 445556677777777


Q ss_pred             Hhhc
Q 025803          242 SLMK  245 (248)
Q Consensus       242 S~~~  245 (248)
                      |.++
T Consensus       241 ~~~~  244 (254)
T COG0861         241 SARK  244 (254)
T ss_pred             HHHH
Confidence            7665

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=100.00  E-value=1.8e-52  Score=365.82  Aligned_cols=201  Identities=26%  Similarity=0.413  Sum_probs=178.1

Q ss_pred             HHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhccc
Q 025803           17 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE   96 (248)
Q Consensus        17 ~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~k~~~~~~   96 (248)
                      ++|++||+||++|++++++  ++|++||||+++||+.+|+++|++|++++++++ +++|++++||+||+|+++|++++++
T Consensus         2 ~lE~vLS~DN~~via~~~~--~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll-~~~~l~~iGG~~Ll~~~~k~l~~~~   78 (215)
T TIGR03716         2 ILEGLLSADNALVLAVMVK--HLPEKQRKKALFYGLIGAYVFRFIALFLASFLI-KFWWIKAIGALYLLYLAIKHFRKKK   78 (215)
T ss_pred             chhHHHHhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6899999999999999999  599999999999999999999999999999999 6789999999999999999999765


Q ss_pred             CCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHHhcCChhHHHHHHHH
Q 025803           97 DDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLF  176 (248)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~~~~li~~g~~~  176 (248)
                      ++++.++++                         .+...+++|.++.+||.+|++||+|||+|++|+|+|++++++|+++
T Consensus        79 ~~~~~~~~~-------------------------~~~~~~~f~~av~~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~  133 (215)
T TIGR03716        79 KGKEDEEAE-------------------------KKKAHSGFWRTVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGII  133 (215)
T ss_pred             ccccccccc-------------------------cccccchHHHHHHHHHHHHHHHHhhhHHHHHHhccChHHHHHHHHH
Confidence            443322221                         0111246889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhh--------cccccChh-----HHHHHHHHHHHHHHHHHh
Q 025803          177 AILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY--------FGFHISTE-----ASLSFVATSLSAGVLLSL  243 (248)
Q Consensus       177 ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~--------~~~~ip~~-----~~~~~i~~vl~~~i~~S~  243 (248)
                      |+++||++|+.+++++||||++||+++.+|+++|+||++++        .++|+|+.     .+..+++.++.++.+.|.
T Consensus       134 sIl~lr~~s~~l~~li~r~p~L~~~~~~iL~~ig~kLil~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~~~~~~  213 (215)
T TIGR03716       134 GILIMRFAATIFVKLLERFPELETAAFLLIGWIGVKLLLETLAHPSIPILHIEFPHSALWKLIFWGVLVAIAVVGWILSY  213 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCcchhhHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999964        45667765     888889999988888876


Q ss_pred             hc
Q 025803          244 MK  245 (248)
Q Consensus       244 ~~  245 (248)
                      +|
T Consensus       214 ~~  215 (215)
T TIGR03716       214 RR  215 (215)
T ss_pred             cC
Confidence            54

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=100.00  E-value=7.2e-51  Score=348.61  Aligned_cols=183  Identities=38%  Similarity=0.587  Sum_probs=163.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 025803           13 YWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF   92 (248)
Q Consensus        13 ~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~k~~   92 (248)
                      ++++++|.+||+||++|+++++++  +|++||||+++||+.+|+++|++++++++++++.+||++++||+||+|+++|++
T Consensus         1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~   78 (183)
T PF03741_consen    1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL   78 (183)
T ss_pred             CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999995  999999999999999999999999999999997779999999999999999999


Q ss_pred             hcccCCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHHhcCChhHHHH
Q 025803           93 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS  172 (248)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~~~~li~~  172 (248)
                      ++++ ++|+ +++..++.++..|                 ....++|.++.+||++|++||+|||||++|+|+|++++++
T Consensus        79 ~~~~-~~d~-~~~~~~~~~~~~~-----------------~~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it~~~~iv~~  139 (183)
T PF03741_consen   79 HEER-DEDP-ENAEVEEEKKFFP-----------------VSKSSLWLAVIQIELADLVFSLDSVLAAVGITDDFFIVIT  139 (183)
T ss_pred             Hhcc-cccc-chhhhhhhhcccc-----------------chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Confidence            9875 2333 3333333332222                 1224589999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHh
Q 025803          173 SNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD  216 (248)
Q Consensus       173 g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~  216 (248)
                      |+++|+++||++|+.+++++||||+++++++.+|+++|+||++|
T Consensus       140 g~i~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~ig~~li~~  183 (183)
T PF03741_consen  140 GNIISILLMRFLSFLLAKLLERFPYLKYLAAAILGFIGVKLILE  183 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999875

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=100.00  E-value=4.1e-45  Score=311.31  Aligned_cols=174  Identities=24%  Similarity=0.309  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 025803           12 EYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL   91 (248)
Q Consensus        12 f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~k~   91 (248)
                      +++..++|.+||+||++|++++++  ++|++||||++.||+.+|+++|.+|+++|.++++ +||+++.||++|+|+|+||
T Consensus         2 ~~~li~le~vLs~DN~~vi~~~t~--~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m   78 (176)
T TIGR03717         2 LLQIIAIDLVLGGDNAVVIALAAR--NLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL   78 (176)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999888  6999999999999999999999999999999995 7999999999999999999


Q ss_pred             hhcccCCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHHhcC-ChhHH
Q 025803           92 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTR-DPFIV  170 (248)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~-~~~li  170 (248)
                      ++++++++|.++                             ...+|+|.++.+||.+|++||+|||||++|+|+ |++++
T Consensus        79 l~~~~~~~~~~~-----------------------------~~~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~~~~~~li  129 (176)
T TIGR03717        79 LLEEEEEQGGDV-----------------------------KGSTTLWAAIKTIVIADAVMSLDNVLAVAGAAHGHLGLL  129 (176)
T ss_pred             Hhcccccccccc-----------------------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            986544333211                             123789999999999999999999999999997 67889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhh
Q 025803          171 FSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY  217 (248)
Q Consensus       171 ~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~  217 (248)
                      ++|.++|++.||+.+..+.+++||||++||+++.+|+|+|+||+++|
T Consensus       130 ~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~ig~kl~~~d  176 (176)
T TIGR03717       130 IFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGYVAGEMIVTD  176 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999864

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PRK14013 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-44  Score=330.83  Aligned_cols=238  Identities=21%  Similarity=0.249  Sum_probs=194.7

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-------------
Q 025803            7 RQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR-------------   72 (248)
Q Consensus         7 ~~a~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~-------------   72 (248)
                      +......+..++|.+||.||++++|.+.+  ++|++||||+|.||+.+|+ ++|++|++..+++.+.             
T Consensus        27 ~~~~~~~~L~vLEisLsfDNaIvnA~vl~--~m~~~wq~~fl~~Gi~iAvFgmRlvfp~~iv~i~a~~~p~~~~~~a~s~  104 (338)
T PRK14013         27 SALFIVAILAVLEISLSFDNAVVNATVLK--RMSPKWQKRFLTWGILIAVFGMRLVFPLLIVAVAAGLGPIEALKLALND  104 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHcCC
Confidence            44555677779999999999999999999  5899999999999999996 9999999999998764             


Q ss_pred             -----------chHHHHHHHHHHHHHHHHHhhcccCCCCcchhHHHHHhhhhccc-------------------ccccCC
Q 025803           73 -----------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPV-------------------TTYYDG  122 (248)
Q Consensus        73 -----------~~~i~~~gG~~Ll~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~  122 (248)
                                 .|.+..+||.||++.+.++++++|+|.++-. ++.|.++|.-+.                   .++.+.
T Consensus       105 ~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~~Wl~-~iE~~~~~~g~~~~~~v~~~l~~l~~~~~~~~~~~~~  183 (338)
T PRK14013        105 PDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDVHWLG-WIERPLAKLGKLDGISVIVALVLLLIFSLLLPADEAL  183 (338)
T ss_pred             chhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCccchh-HHHHHHHHhcCccchHHHHHHHHHHHHHHHcccchhh
Confidence                       2347889999999999999998877666432 222333332221                   111100


Q ss_pred             -------------------Cceeecc--C-CccccchHHHHHHHHHHHHHHhccchhHHHHHhcCChhHHHHHHHHHHHH
Q 025803          123 -------------------NRFFTNQ--D-GMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILG  180 (248)
Q Consensus       123 -------------------~~f~~~~--~-g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~~~~li~~g~~~ai~~  180 (248)
                                         ++++..+  + .+...+.-+..++++|++|++||+|||||++|+|+|++++++||++|+++
T Consensus       184 ~~~~a~~~G~~~y~~v~~~~~~~~~~~~~~~~~~~k~g~~~fl~lE~~D~~FS~DsV~aafAiT~d~~II~~g~~igil~  263 (338)
T PRK14013        184 TVLIAGLLGLLTYLIVEGLGGLFEEEEEDAMTAVGKAGLGGFLYLEVLDASFSFDGVIGAFAITNDIFIIALGLGIGAMF  263 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHhccchhheeecCcHHHHHHHHHHHHHH
Confidence                               0122111  1 11234566789999999999999999999999999999999999999999


Q ss_pred             HHHH--HHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhhcccccChhHHHHHHHHHHHHHHHHHhhccCC
Q 025803          181 LRSL--FTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD  248 (248)
Q Consensus       181 lr~l--~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~~~~~ip~~~~~~~i~~vl~~~i~~S~~~~~~  248 (248)
                      +|++  |++..+.++|||||||+++++++++|+||+++ .++|+|+|+++.+++.++..++.+|++++|+
T Consensus       264 lRslt~yfv~~g~L~~f~yLe~ga~~~I~~lgvkmll~-~~~~IPe~vs~~i~~~~i~~si~~S~~~~r~  332 (338)
T PRK14013        264 VRSLTIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLS-IGVHIPEVITGLIGVALIGLAFWSSIRYNRR  332 (338)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhccHHHHHHHHHHHHHHh-cCcCCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999  88888899999999999999999999999998 5689999999999999999999999987653

>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains

Probab=100.00  E-value=3.7e-33  Score=250.67  Aligned_cols=221  Identities=20%  Similarity=0.283  Sum_probs=179.2

Q ss_pred             hhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh------------------------chHHHH
Q 025803           24 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR------------------------FEAVNL   78 (248)
Q Consensus        24 ~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~------------------------~~~i~~   78 (248)
                      .|||+|+|.+.+.  +.+.|||+.|.||+++|+ ++|++|++++++..++                        .+.+..
T Consensus         1 FDNAVVNA~vLk~--Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa   78 (294)
T PF04332_consen    1 FDNAVVNATVLKR--MSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA   78 (294)
T ss_pred             CCchhhhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence            4999999999995  789999999999999995 9999999999997654                        234788


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCcchhHHHHHhhhhccc-------------------ccccC--CC--------------
Q 025803           79 VLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPV-------------------TTYYD--GN--------------  123 (248)
Q Consensus        79 ~gG~~Ll~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~--~~--------------  123 (248)
                      +||.||++.+.+++++++| .++-. ++.|.+.|.-+.                   .++-+  ..              
T Consensus        79 FGG~FLlmvfL~f~f~~~k-~~Wl~-~iE~~l~~~g~~~~~~~~v~l~~l~~~~~~l~~~~~~~~~~l~agi~G~~~f~~  156 (294)
T PF04332_consen   79 FGGMFLLMVFLDFFFDEEK-VHWLR-WIERPLAKLGKLDAISVVVALLALLIIAVFLAASADEAPTVLLAGILGLVTFLI  156 (294)
T ss_pred             HhHHHHHHHHHheeecCCc-ceeeh-HHHHHHHHcCCcccchhHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Confidence            9999999999999998766 44321 122222222111                   00000  00              


Q ss_pred             -----ceeeccCC-----ccccchHHHHHHHHHHHHHHhccchhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH--HH
Q 025803          124 -----RFFTNQDG-----MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLIS--EG  191 (248)
Q Consensus       124 -----~f~~~~~g-----~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~~~~li~~g~~~ai~~lr~l~~~~~--~~  191 (248)
                           +++..+++     ......-+..+++.|+.|.+||+|+|++|+|+|+|++++..|+.+|.+.+|++.-.+.  +.
T Consensus       157 v~~l~~~~e~~~~~~~~~~~~~k~g~~~FlYLEVLDASFSfDGVIGAFAiT~~i~iI~iGLgIGAmfVRSlTi~lV~kgt  236 (294)
T PF04332_consen  157 VNGLGSLFEAEEEPTAAAVAVGKAGLSGFLYLEVLDASFSFDGVIGAFAITNNIFIIAIGLGIGAMFVRSLTIYLVEKGT  236 (294)
T ss_pred             HHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhhhccccceeehhhhhcchHHHHHhcccceeeeeeeeEEeEecCc
Confidence                 11112111     1234567889999999999999999999999999999999999999999999965555  79


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHhHhhcccccChhHHHHHHHHHHHHHHHHHhhccCC
Q 025803          192 MADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD  248 (248)
Q Consensus       192 l~k~~~L~~~~~~iL~~ig~klll~~~~~~ip~~~~~~~i~~vl~~~i~~S~~~~~~  248 (248)
                      +++|+||||++.+.++..|+-|+++..|+|+|++++..+.+..+.+++..|++++|+
T Consensus       237 L~~Y~YLEhGA~yAIg~La~IMll~~~~~~iPE~vTglig~~~Ig~a~~sSi~~~r~  293 (294)
T PF04332_consen  237 LSEYRYLEHGAHYAIGALAVIMLLSIFGFHIPEVVTGLIGVVFIGLAFWSSIRYNRR  293 (294)
T ss_pred             HHHhHHHhcchHHHHHHHHHHHHHHhhcccchHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999999988775

>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=6e-33  Score=247.43  Aligned_cols=225  Identities=23%  Similarity=0.287  Sum_probs=184.1

Q ss_pred             HHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-----------------------
Q 025803           17 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR-----------------------   72 (248)
Q Consensus        17 ~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~-----------------------   72 (248)
                      ++|.+||.||++|+|-+.+.  ++|.|||+.|.|||++|+ .||++|+..+++.-..                       
T Consensus        44 vLEiSLSFDNAIvNA~iLk~--MS~~Wqk~FLT~GIlIAVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~  121 (346)
T COG2899          44 VLEISLSFDNAIVNAAILKD--MSPFWQKRFLTWGILIAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITD  121 (346)
T ss_pred             HhhhheechHHHhhHHHHHh--ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHh
Confidence            78999999999999999995  799999999999999995 9999999999986543                       


Q ss_pred             -chHHHHHHHHHHHHHHHHHhhcccCCCCcchhHHHHHhhhhcc----c-------------------ccccCCCceee-
Q 025803           73 -FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIP----V-------------------TTYYDGNRFFT-  127 (248)
Q Consensus        73 -~~~i~~~gG~~Ll~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------~~~~~~~~f~~-  127 (248)
                       .+.+..+||.||++.+.++++|.|++.++     .||++|.+.    +                   +.+-|...+.. 
T Consensus       122 aH~~IAAFGG~FLlMv~L~fffd~erd~hW-----l~~iE~~~arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~A  196 (346)
T COG2899         122 AHPQIAAFGGTFLLMVFLDFFFDHERDVHW-----LKWIERPLARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIA  196 (346)
T ss_pred             cCchhhhhhhHHHHHHHHHHhcCccccchh-----hhhHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcCccccceehHH
Confidence             34578999999999999999986655543     344443331    1                   11111111111 


Q ss_pred             -------------------ccCC--ccccchHHHHHHHHHHHHHHhccchhHHHHHhcCChhHHHHHHHHHHHHHHHH--
Q 025803          128 -------------------NQDG--MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSL--  184 (248)
Q Consensus       128 -------------------~~~g--~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~~~~li~~g~~~ai~~lr~l--  184 (248)
                                         ..++  ......-+.+.++.|+.|.+||+|.|++++|+|+|++++..|+.+|.+.+|++  
T Consensus       197 gl~GlltyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVLDAsFSFDGViGAFAiT~d~vIIalGLgIGAmfVRSiTi  276 (346)
T COG2899         197 GLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVLDASFSFDGVIGAFAITTDPVIIALGLGIGAMFVRSITI  276 (346)
T ss_pred             HHHHHHHHHHHHHhhhHhhcCHHHHhhhhhcchhHHHHHHHHhhhccccceeeeeeeccCchhheeccchhheeeeeeEE
Confidence                               0000  01223457899999999999999999999999999999999999999999999  


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhhcccccChhHHHHHHHHHHHHHHHHHhhccCC
Q 025803          185 FTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD  248 (248)
Q Consensus       185 ~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~~~~~ip~~~~~~~i~~vl~~~i~~S~~~~~~  248 (248)
                      |-+-.+.+|+|+||||++.+.++..++-|+++.--+|||++++..+.+..+.+++.+|++++|+
T Consensus       277 ~LV~kgTL~~y~yLEHGAhyAI~~Laviml~s~~~~hIpEvvTgL~Ga~fIgls~~sSv~~Nr~  340 (346)
T COG2899         277 YLVEKGTLDEYVYLEHGAHYAIGALAVIMLLSTDRFHIPEVVTGLVGAVFIGLSLWSSVRYNRR  340 (346)
T ss_pred             EEEecCcHHHHHHHhcchHHHHHHHHHHHHHhhhheehHHHHHHhhHHHHHHHHHHHHHHHhHh
Confidence            6666799999999999999999999999999874589999999999999999999999988764

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=97.91  E-value=0.0016  Score=56.83  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=63.8

Q ss_pred             HhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHhhccc
Q 025803           21 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASEE   96 (248)
Q Consensus        21 ~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~----~~i~~~gG~~Ll~~a~k~~~~~~   96 (248)
                      +=-..|+-++...++.  .|+++|||...-....|.+.=.+|.++|.++++.|    +-.+..||+.|...|++|+.+++
T Consensus        15 inP~g~ip~f~~lt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~   92 (203)
T PF01914_consen   15 INPIGNIPIFLSLTKG--MSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSP   92 (203)
T ss_pred             HhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3346789999999994  78999999999999999999999999999999653    34899999999999999998654

These proteins may be transporters. ; GO: 0016021 integral to membrane

>COG1971 Predicted membrane protein [Function unknown]

Probab=97.89  E-value=0.0031  Score=54.64  Aligned_cols=171  Identities=16%  Similarity=0.187  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHhhhhHHHH-HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----hHHHHHHHHHH
Q 025803           11 EEYWRYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGIL   84 (248)
Q Consensus        11 ~f~~~~~lE~~LS~DNa~v-ia~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~-----~~i~~~gG~~L   84 (248)
                      ++++..++-..+|.||..| ++.=.+.  .+++. +.++..|+.... +..+++..|.+.=.-+     .|-..+|++.|
T Consensus         2 ~~~sllllA~alsmDAFav~l~~G~~~--~k~~~-~~~L~ia~~fG~-f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL   77 (190)
T COG1971           2 NIISLLLLAIALSMDAFAVSLGKGLAK--HKIRF-KEALVIALIFGV-FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLL   77 (190)
T ss_pred             cHHHHHHHHHHHhhHHHHHHHHhhhhh--ccccH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999655 2222232  23332 445555554443 5667777766543222     36678899999


Q ss_pred             HHHHHHHhhcc--cCCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHH
Q 025803           85 LFSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFG  162 (248)
Q Consensus        85 l~~a~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~a  162 (248)
                      .+.+.+|+.+.  +||++..+++                       +++.     +  -.....+.-+.-|+|+.+..++
T Consensus        78 ~~lG~~mI~e~f~~~~~~~~~~~-----------------------~~~~-----~--~~~~~~~laiatSidal~vG~~  127 (190)
T COG1971          78 IILGLKMIIEGFKNEEDEFVDPA-----------------------EKHD-----L--NFKELILLAIATSIDALAVGVG  127 (190)
T ss_pred             HHHHHHHHHHHhchhhcchhccc-----------------------ccch-----h--hHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999864  2222211110                       0010     0  0122334556779999988887


Q ss_pred             hcC---Chh--HHHHH---HHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhhc
Q 025803          163 VTR---DPF--IVFSS---NLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF  218 (248)
Q Consensus       163 it~---~~~--li~~g---~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~~  218 (248)
                      .+.   |.+  .+.+|   .+.+..+.-.. ..+.++..|  |-|..+..+|..+|.|++.+..
T Consensus       128 ~a~lgv~i~~~av~iG~~T~il~~~G~~IG-~~~g~~~g~--~ae~lgGiiLI~~G~~iL~~~~  188 (190)
T COG1971         128 LAFLGVNILLAAVAIGLITLILSALGAIIG-RKLGKFLGK--YAEILGGIILIGIGVKILLEHL  188 (190)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhc
Confidence            765   222  22333   23333333333 344445444  5678899999999999998764

>PRK10995 inner membrane protein; Provisional

Probab=97.78  E-value=0.0048  Score=54.44  Aligned_cols=71  Identities=10%  Similarity=0.153  Sum_probs=61.9

Q ss_pred             hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHHHHhhcc
Q 025803           23 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR----FEAVNLVLAGILLFSSFKLFASE   95 (248)
Q Consensus        23 S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~----~~~i~~~gG~~Ll~~a~k~~~~~   95 (248)
                      =..|+-++...++.  .++++|||.-....+.|.+.=.++.+.|..+++-    .+..+..||++|++.|++|++++
T Consensus        21 P~g~~pif~~lt~~--~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~   95 (221)
T PRK10995         21 PLTTVALFLGLSGN--MTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ   95 (221)
T ss_pred             hhhhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45788899999984  7899999999999999988888999999999864    35789999999999999999754

>TIGR00427 membrane protein, MarC family

Probab=97.66  E-value=0.0069  Score=52.87  Aligned_cols=75  Identities=13%  Similarity=0.273  Sum_probs=64.4

Q ss_pred             HHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHhhc
Q 025803           19 EQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFAS   94 (248)
Q Consensus        19 E~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~----~~i~~~gG~~Ll~~a~k~~~~   94 (248)
                      =.+=-..|+-++...++  +.|+++|+|........|.+.=++|.+.|.++++.|    +-.+..||+.|+.+|++|+..
T Consensus        16 ~iinPig~ipvfl~lt~--~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~   93 (201)
T TIGR00427        16 AIINPIGNIPIFISLTE--YYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSG   93 (201)
T ss_pred             HHhCcchHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            34445789999999999  479999999999999999988889999999999643    448999999999999999965


Q ss_pred             c
Q 025803           95 E   95 (248)
Q Consensus        95 ~   95 (248)
                      +
T Consensus        94 ~   94 (201)
T TIGR00427        94 E   94 (201)
T ss_pred             C
Confidence            4

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>PRK10739 putative antibiotic transporter; Provisional

Probab=97.65  E-value=0.013  Score=51.18  Aligned_cols=73  Identities=18%  Similarity=0.250  Sum_probs=62.7

Q ss_pred             HhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHhhcc
Q 025803           21 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE   95 (248)
Q Consensus        21 ~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~----~~i~~~gG~~Ll~~a~k~~~~~   95 (248)
                      +=-..|+-++...++.  .|+++|||...-....|.+.=++|.+.|..+++.|    +-.+..||+.|+..|++|++++
T Consensus        15 inPig~ipiflslt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~   91 (197)
T PRK10739         15 MDPLGNLPIFMSVLKH--LEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS   91 (197)
T ss_pred             HhHhhHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3456799999999994  79999999999999999888889999999999653    4489999999999999999765

>PRK11469 hypothetical protein; Provisional

Probab=97.56  E-value=0.016  Score=50.14  Aligned_cols=169  Identities=13%  Similarity=0.092  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhc-hHHHHHHHHHHH
Q 025803           11 EEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL----GTATLQRF-EAVNLVLAGILL   85 (248)
Q Consensus        11 ~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~----~~~ll~~~-~~i~~~gG~~Ll   85 (248)
                      ++++..++=..||.||..|=-..=.  +.|+...++.+......+. +..+++.+    |..+-+-. ++-..+++..|+
T Consensus         2 ~~~~i~llaialsmDaF~v~ia~G~--~~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~   78 (188)
T PRK11469          2 NITATVLLAFGMSMDAFAASIGKGA--TLHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLI   78 (188)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhh--cccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999766433221  1344444554444444443 33444443    33222111 245678899999


Q ss_pred             HHHHHHhhcc--cCCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHHh
Q 025803           86 FSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGV  163 (248)
Q Consensus        86 ~~a~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ai  163 (248)
                      .++.+|+.+.  ++++++++..                         .+   +..+    .....=+.-|+|+..+-++.
T Consensus        79 ~lG~~mi~e~~~~~~~~~~~~~-------------------------~~---~~~~----~~l~LaiAtSiDAlavGi~~  126 (188)
T PRK11469         79 FLGGRMIIEGFRGADDEDEEPR-------------------------RR---HGFW----LLVTTAIATSLDAMAVGVGL  126 (188)
T ss_pred             HHHHHHHHHHHhcccccccccc-------------------------cC---CCHH----HHHHHHHHHHHHHHHHHHHH
Confidence            9999999864  1111111100                         00   0111    12233456799998887766


Q ss_pred             c--C-ChhH--H---HHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhh
Q 025803          164 T--R-DPFI--V---FSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY  217 (248)
Q Consensus       164 t--~-~~~l--i---~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~  217 (248)
                      +  + |++.  +   .++.+++..+++... .+.+...|+  .+..+..+|..+|+|++++.
T Consensus       127 ~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~-~~g~~~g~~--a~~lgG~iLI~iGi~il~~h  185 (188)
T PRK11469        127 AFLQVNIIATALAIGCATLIMSTLGMMVGR-FIGSIIGKK--AEILGGLVLIGIGVQILWTH  185 (188)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            4  3 2221  1   222333444444333 333455554  57799999999999999874

>PRK11111 hypothetical protein; Provisional

Probab=97.43  E-value=0.028  Score=49.63  Aligned_cols=72  Identities=14%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             hhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHhhcc
Q 025803           22 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE   95 (248)
Q Consensus        22 LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~----~~i~~~gG~~Ll~~a~k~~~~~   95 (248)
                      ==..|+-++...++.  .++++|||........|.+.=..|.+.|.++++-|    +-.+..||+.|+..|++|++.+
T Consensus        22 nPig~ipiflslt~~--~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~   97 (214)
T PRK11111         22 NPVGILPVFISMTSH--QTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK   97 (214)
T ss_pred             CcchhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            345788899999994  78999999999999999888889999999999643    4489999999999999999653

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=97.39  E-value=0.021  Score=50.05  Aligned_cols=76  Identities=22%  Similarity=0.277  Sum_probs=65.2

Q ss_pred             HHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHhhc
Q 025803           19 EQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFAS   94 (248)
Q Consensus        19 E~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~----~~i~~~gG~~Ll~~a~k~~~~   94 (248)
                      =.+=...|+-++..+.++  .|+++|+|+..--...|...=.+|.++|.++++-|    +-.+..||..|.+.|++|+..
T Consensus        16 ~i~dP~G~ipvf~slt~~--~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~   93 (203)
T COG2095          16 AIIDPIGNLPVFISLTKG--LSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFG   93 (203)
T ss_pred             HHhCCCchhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcC
Confidence            345567899999999995  79999999999999999988889999999999633    347899999999999999986


Q ss_pred             cc
Q 025803           95 EE   96 (248)
Q Consensus        95 ~~   96 (248)
                      +.
T Consensus        94 ~~   95 (203)
T COG2095          94 PT   95 (203)
T ss_pred             Cc
Confidence            53

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=97.37  E-value=0.076  Score=45.61  Aligned_cols=84  Identities=10%  Similarity=0.052  Sum_probs=56.4

Q ss_pred             hhHHHHHHHHHHHHHh--hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchH----HHHH
Q 025803            7 RQTEEEYWRYILEQSL--SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLV   79 (248)
Q Consensus         7 ~~a~~f~~~~~lE~~L--S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~~----i~~~   79 (248)
                      |....|+...++ ...  +-||+.+.+.-.++ +   ..+-.....|+..+...=......+. .++++.||    ++++
T Consensus         4 ~~~~~f~~~~~~-~~~sPGP~~~~v~~~~~~~-G---~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~   78 (195)
T PRK10323          4 TLLSAFWTYTLI-TAMTPGPNNILALSSATSH-G---FRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWA   78 (195)
T ss_pred             HHHHHHHHHHHH-HhCCCChHHHHHHHHHHHh-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555544 444  78999999887763 2   33334566777777655555444444 45556555    7899


Q ss_pred             HHHHHHHHHHHHhhcc
Q 025803           80 LAGILLFSSFKLFASE   95 (248)
Q Consensus        80 gG~~Ll~~a~k~~~~~   95 (248)
                      |++||+|.|+|+++++
T Consensus        79 Ga~YLlyLg~~~~~s~   94 (195)
T PRK10323         79 GAAYIVWLAWKIATSP   94 (195)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999999864

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=97.26  E-value=0.0051  Score=52.95  Aligned_cols=75  Identities=24%  Similarity=0.240  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q 025803           10 EEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSS   88 (248)
Q Consensus        10 ~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a   88 (248)
                      ....+..+.|.+.|.||+.....+.+        +......|...|+ ++|...-.+.. +++++|++.+.++++|.|+|
T Consensus       107 ~~v~~I~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~~~~-~l~~~p~l~~~~~~~L~~ig  177 (183)
T PF03741_consen  107 LAVIQIELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFLLAK-LLERFPYLKYLAAAILGFIG  177 (183)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            33455568899999999998888773        4578888988886 78877666654 67899999999999999999


Q ss_pred             HHHhh
Q 025803           89 FKLFA   93 (248)
Q Consensus        89 ~k~~~   93 (248)
                      .|++.
T Consensus       178 ~~li~  182 (183)
T PF03741_consen  178 VKLIL  182 (183)
T ss_pred             HHHhh
Confidence            99975

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=97.04  E-value=0.12  Score=45.00  Aligned_cols=78  Identities=24%  Similarity=0.277  Sum_probs=51.5

Q ss_pred             HHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh----chHHHHHHHHHHHHHH
Q 025803           14 WRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG-TATLQR----FEAVNLVLAGILLFSS   88 (248)
Q Consensus        14 ~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~-~~ll~~----~~~i~~~gG~~Ll~~a   88 (248)
                      .....-.+=+=||..+++.-.++    -+.+-..--.|+..+...=......| +.++..    +..++++|++||+|.+
T Consensus        12 ~~~~~~~~PGP~~~~v~~~~~~~----G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg   87 (208)
T COG1280          12 AALVLAATPGPDNLLVLARSLSR----GRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLG   87 (208)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33445555577999999987663    24444445555555555555555555 345544    3458999999999999


Q ss_pred             HHHhhcc
Q 025803           89 FKLFASE   95 (248)
Q Consensus        89 ~k~~~~~   95 (248)
                      +|++++.
T Consensus        88 ~~~~ra~   94 (208)
T COG1280          88 WKALRAG   94 (208)
T ss_pred             HHHHhcc
Confidence            9999865

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=96.95  E-value=0.018  Score=50.00  Aligned_cols=73  Identities=23%  Similarity=0.290  Sum_probs=46.4

Q ss_pred             hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHhhcccC
Q 025803           23 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR--FEAVNLVLAGILLFSSFKLFASEED   97 (248)
Q Consensus        23 S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~--~~~i~~~gG~~Ll~~a~k~~~~~~~   97 (248)
                      ++|+.++....|+.  .+.+.|+|-..+|=..+...=+..-+.+......  -+|+.-+-|..=++.|+|.+.+.||
T Consensus         5 niDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~~~~   79 (191)
T PF03596_consen    5 NIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFSGED   79 (191)
T ss_pred             cHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            58999999999995  4555566777777333332222222222222323  3588777799999999998776443

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=96.94  E-value=0.0082  Score=54.35  Aligned_cols=75  Identities=24%  Similarity=0.259  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 025803           12 EYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK   90 (248)
Q Consensus        12 f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~k   90 (248)
                      ..+..++|.+-|.||+....-+++        +.-+...|...|+ ++|...-.+.. +++++|++.+.+.++|.|+|.|
T Consensus       137 i~~I~i~D~vFSlDSV~Aa~g~~~--------~~~im~~a~i~aI~~m~~aa~~l~~-ll~r~p~l~~~~~~iL~~IG~k  207 (254)
T COG0861         137 IIQIELADLVFSLDSVIAAVGMAG--------HPFVMVTAVIFAILVMRFAAFLLAR-LLERHPTLKYLALVILLFIGVK  207 (254)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHH-HHHHchHHHHHHHHHHHHHHHH
Confidence            344558999999999998888775        3468899999996 88877766655 6789999999999999999999


Q ss_pred             Hhhcc
Q 025803           91 LFASE   95 (248)
Q Consensus        91 ~~~~~   95 (248)
                      ++.+.
T Consensus       208 li~~~  212 (254)
T COG0861         208 LILEG  212 (254)
T ss_pred             HHHhh
Confidence            99875

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=96.88  E-value=0.22  Score=41.96  Aligned_cols=70  Identities=21%  Similarity=0.205  Sum_probs=42.7

Q ss_pred             hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhch----HHHHHHHHHHHHHHHHHhhccc
Q 025803           23 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL-QRFE----AVNLVLAGILLFSSFKLFASEE   96 (248)
Q Consensus        23 S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll-~~~~----~i~~~gG~~Ll~~a~k~~~~~~   96 (248)
                      +-+|+.++..-.++    ..++--....|...+-..=......+...+ +..+    +++++|++||+|.|++.+++..
T Consensus         8 GP~~~~~i~~~~~~----G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~   82 (191)
T PF01810_consen    8 GPVNLLVISNGLRK----GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF   82 (191)
T ss_pred             CHHHHHHHHHHHHh----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            56788888876652    122223334444444444444444444433 3233    5789999999999999998653

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=96.87  E-value=0.015  Score=51.48  Aligned_cols=76  Identities=18%  Similarity=0.229  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Q 025803           11 EEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSF   89 (248)
Q Consensus        11 ~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~   89 (248)
                      ...+....|.+.|.||+.....+.+        .......|...++ ++|..--.+ +.+++++|++.+.|.++|.|+|.
T Consensus        98 av~~I~~~DlvFSlDSV~A~~git~--------~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~  168 (215)
T TIGR03716        98 TVLKVELMDIAFSVDSILAAVALSG--------QFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGV  168 (215)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhcc--------ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455668899999999998887754        3357888888885 888776666 45778999999999999999999


Q ss_pred             HHhhcc
Q 025803           90 KLFASE   95 (248)
Q Consensus        90 k~~~~~   95 (248)
                      |++.+.
T Consensus       169 kLil~~  174 (215)
T TIGR03716       169 KLLLET  174 (215)
T ss_pred             HHHHHH
Confidence            999864

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=96.74  E-value=0.026  Score=48.27  Aligned_cols=75  Identities=23%  Similarity=0.255  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhccchhHHHHHhcCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhH
Q 025803          142 VAVIELSDIAFAVDSIPAVFGVTRDP------FIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL  215 (248)
Q Consensus       142 v~~Ie~~Dl~FSlDSV~A~~ait~~~------~li~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll  215 (248)
                      +.++.+.|++.|.||.....-.|++.      -....|...+. .+|...-.+...+=++|++++++..+|.++|.||+.
T Consensus         2 ~~~li~le~vLs~DN~~vi~~~t~~lp~~~r~~~~~~G~~~A~-vlr~if~~~G~~ll~~~~~~iaGGllLl~ia~~ml~   80 (176)
T TIGR03717         2 LLQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGAI-VLRILLTAVAVYLLAIPFLKLIGGLLLLWIGWKLLL   80 (176)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            56899999999999999888788742      35566665554 555555555545555899999999999999999987


Q ss_pred             hh
Q 025803          216 DY  217 (248)
Q Consensus       216 ~~  217 (248)
                      +.
T Consensus        81 ~~   82 (176)
T TIGR03717        81 EE   82 (176)
T ss_pred             cc
Confidence            54

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PRK10958 leucine export protein LeuE; Provisional

Probab=96.73  E-value=0.33  Score=42.21  Aligned_cols=74  Identities=16%  Similarity=0.135  Sum_probs=47.0

Q ss_pred             HHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhchH----HHHHHHHHHHHHHHHHh
Q 025803           18 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFEA----VNLVLAGILLFSSFKLF   92 (248)
Q Consensus        18 lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~-ll~~~~~----i~~~gG~~Ll~~a~k~~   92 (248)
                      .-.+=+-||+.+++.-.++    .+.+--.-..|+..+...=.....++.. +++..|+    ++++|++||+|.|+|.+
T Consensus        20 ~~~sPGP~~~~v~~~~~~~----G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~   95 (212)
T PRK10958         20 IVLLPGPNSLYVLSTAARR----GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKML   95 (212)
T ss_pred             HhcCCchHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344577999999987653    1222233344555555555444444443 4434444    78999999999999999


Q ss_pred             hcc
Q 025803           93 ASE   95 (248)
Q Consensus        93 ~~~   95 (248)
                      +++
T Consensus        96 ~~~   98 (212)
T PRK10958         96 RAA   98 (212)
T ss_pred             Hhh
Confidence            864

>PRK09304 arginine exporter protein; Provisional

Probab=96.03  E-value=0.87  Score=39.33  Aligned_cols=79  Identities=16%  Similarity=0.069  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchH----HHHHHHHHHH
Q 025803           11 EEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILL   85 (248)
Q Consensus        11 ~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~~----i~~~gG~~Ll   85 (248)
                      -++.|+.+-..=+-||+.+.+.-.++      .+......|+..+..+=.....+|. .+++..||    ++++|++||+
T Consensus         8 g~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLl   81 (207)
T PRK09304          8 GFALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLL   81 (207)
T ss_pred             HHHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555666666677999999885541      2234555566555555444433444 35556665    6889999999


Q ss_pred             HHHHHHhhcc
Q 025803           86 FSSFKLFASE   95 (248)
Q Consensus        86 ~~a~k~~~~~   95 (248)
                      |.|+|.++++
T Consensus        82 yLg~~~~rs~   91 (207)
T PRK09304         82 WYGFGAFKTA   91 (207)
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=95.63  E-value=1.4  Score=38.54  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=45.7

Q ss_pred             HHHHHHHHhhhhHHHH-HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-h-HHHHHHHHHHHHHHHH
Q 025803           14 WRYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFK   90 (248)
Q Consensus        14 ~~~~lE~~LS~DNa~v-ia~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~-~-~i~~~gG~~Ll~~a~k   90 (248)
                      +..++=.++|.|+..| ++.-.+.  .+. .-+..+..|+.-+. +=.+-..+|..+-+.+ + +-.++|++.|++++.+
T Consensus         2 ~i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~~-~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~   77 (206)
T TIGR02840         2 SLLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISGL-FIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIW   77 (206)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence            3466788999999877 5443332  222 23345555554442 2222233334333222 2 4678999999999999


Q ss_pred             Hhhc
Q 025803           91 LFAS   94 (248)
Q Consensus        91 ~~~~   94 (248)
                      ++.+
T Consensus        78 mi~~   81 (206)
T TIGR02840        78 IIYN   81 (206)
T ss_pred             HHHH
Confidence            9875

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>PRK10229 threonine efflux system; Provisional

Probab=95.49  E-value=0.17  Score=43.45  Aligned_cols=77  Identities=14%  Similarity=0.138  Sum_probs=51.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchH----HHHHHHHHHHHHHH
Q 025803           15 RYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSF   89 (248)
Q Consensus        15 ~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~~----i~~~gG~~Ll~~a~   89 (248)
                      ..+...+=+-||+.++..-.++    ..++--....|+..+...=.....+|. .++++.|+    ++++|++||+|.|+
T Consensus        12 ~~~~~~sPGP~~~~vi~~~~~~----G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~   87 (206)
T PRK10229         12 HIVALMSPGPDFFFVSQTAVSR----SRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGY   87 (206)
T ss_pred             HHHHhcCCCchhHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3455555677999999887763    233444455666666655555544444 45555554    78999999999999


Q ss_pred             HHhhcc
Q 025803           90 KLFASE   95 (248)
Q Consensus        90 k~~~~~   95 (248)
                      |.+++.
T Consensus        88 ~~~~~~   93 (206)
T PRK10229         88 QMLRGA   93 (206)
T ss_pred             HHHHhc
Confidence            999854

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=95.27  E-value=1.5  Score=36.73  Aligned_cols=68  Identities=15%  Similarity=0.155  Sum_probs=44.0

Q ss_pred             hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchH----HHHHHHHHHHHHHHHHhhc
Q 025803           23 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSFKLFAS   94 (248)
Q Consensus        23 S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~~----i~~~gG~~Ll~~a~k~~~~   94 (248)
                      +-||+.++..-.++    ..++--....|+..+...=+....++. .+++..++    ++++|++||+|.|++.+++
T Consensus         3 GP~~~~~~~~~~~~----G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~   75 (185)
T TIGR00949         3 GPNFFVVMQTSLSS----GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK   75 (185)
T ss_pred             CcchHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34788888776652    233334455566666555544444433 45555554    7899999999999999985

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=95.06  E-value=0.16  Score=47.09  Aligned_cols=77  Identities=18%  Similarity=0.254  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhccchhHHHHHhcC--------ChhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcHHHHHHHHHHHHH
Q 025803          140 LTVAVIELSDIAFAVDSIPAVFGVTR--------DPFIVFSSNLFAILGLRSLF-TLISEGMADLEYLQPSIAVVLGFIG  210 (248)
Q Consensus       140 ~~v~~Ie~~Dl~FSlDSV~A~~ait~--------~~~li~~g~~~ai~~lr~l~-~~~~~~l~k~~~L~~~~~~iL~~ig  210 (248)
                      ....+.-+.|.+.|+||+.....+..        ..-....|. .+.+++|... ..-+.++++|+++.+.+.++|.|+|
T Consensus        63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi-~gAlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a  141 (302)
T TIGR03718        63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGI-LGALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTG  141 (302)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45677778899999999986666532        123555554 5667788774 4456778899999999999999999


Q ss_pred             HHHhHhh
Q 025803          211 CKMILDY  217 (248)
Q Consensus       211 ~klll~~  217 (248)
                      .||+.+.
T Consensus       142 ~k~~~~~  148 (302)
T TIGR03718       142 IKMLFEG  148 (302)
T ss_pred             HHHHhhc
Confidence            9999864

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=94.89  E-value=0.25  Score=42.44  Aligned_cols=75  Identities=12%  Similarity=0.106  Sum_probs=48.4

Q ss_pred             HHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchH----HHHHHHHHHHHHHHHH
Q 025803           17 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSFKL   91 (248)
Q Consensus        17 ~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~~----i~~~gG~~Ll~~a~k~   91 (248)
                      .+-.+=+=||+.++.--.++    ..++-.....|+..+...=.....+|. .+++..|+    ++++|++||+|.|+|.
T Consensus        15 ~~~~sPGP~~~~v~~~~~~~----G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~   90 (205)
T PRK10520         15 ILSLSPGSGAINTMSTSISH----GYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQ   90 (205)
T ss_pred             HHhcCCchhHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444567899998886652    223333344466666555545444444 35555444    7899999999999999


Q ss_pred             hhcc
Q 025803           92 FASE   95 (248)
Q Consensus        92 ~~~~   95 (248)
                      ++++
T Consensus        91 ~~s~   94 (205)
T PRK10520         91 WRAA   94 (205)
T ss_pred             HhCC
Confidence            9864

>TIGR00948 2a75 L-lysine exporter

Probab=94.87  E-value=0.22  Score=41.79  Aligned_cols=67  Identities=15%  Similarity=0.041  Sum_probs=44.7

Q ss_pred             hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhch----HHHHHHHHHHHHHHHHHhhcc
Q 025803           23 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSFKLFASE   95 (248)
Q Consensus        23 S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~----~i~~~gG~~Ll~~a~k~~~~~   95 (248)
                      +-||+.+++.-.++      .+--....|+..+...=.+...+|. .++++.+    .++++|++||+|.|+|.+++.
T Consensus         6 GP~~~~vi~~~~~~------~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~   77 (177)
T TIGR00948         6 GAQNAFVLRQGIRR------EHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA   77 (177)
T ss_pred             cchHHHHHHHHHcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45888888886662      1233455666666555544444444 3554444    478999999999999999864

>COG4280 Predicted membrane protein [Function unknown]

Probab=93.73  E-value=4.6  Score=35.70  Aligned_cols=80  Identities=16%  Similarity=0.132  Sum_probs=57.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHhHhhcccccC-hhHHHHHHHHHHHH-HHHH
Q 025803          166 DPFIVFSSNLFAILGLRSLFTLISEGMADLE--YLQPSIAVVLGFIGCKMILDYFGFHIS-TEASLSFVATSLSA-GVLL  241 (248)
Q Consensus       166 ~~~li~~g~~~ai~~lr~l~~~~~~~l~k~~--~L~~~~~~iL~~ig~klll~~~~~~ip-~~~~~~~i~~vl~~-~i~~  241 (248)
                      +..-.+.|..++-.....+...+-.-+.|-|  .+|..+...|.-.|.-=+-++.+.|.| +-...........+ ..++
T Consensus       146 qwleAi~gagfA~vlvlvl~~~lh~plarvpe~~lKfvag~lL~sfGtfWlgegvg~dwPgdeLaiL~l~a~~gl~~aii  225 (236)
T COG4280         146 QWLEAIMGAGFASVLVLVLTAILHSPLARVPEPHLKFVAGALLFSFGTFWLGEGVGFDWPGDELAILFLLAYLGLNYAII  225 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHhhCCchhHHHHHHHHHHHhhHHHhccccCCCCCchHHHHHHHHHHHHHhHHHh
Confidence            4455677888887777777777777777765  688899998888888888888889999 66666555555555 3455


Q ss_pred             Hhhc
Q 025803          242 SLMK  245 (248)
Q Consensus       242 S~~~  245 (248)
                      |+++
T Consensus       226 sv~W  229 (236)
T COG4280         226 SVYW  229 (236)
T ss_pred             eeee
Confidence            5544

>COG2119 Predicted membrane protein [Function unknown]

Probab=93.29  E-value=4.8  Score=34.99  Aligned_cols=156  Identities=16%  Similarity=0.244  Sum_probs=97.1

Q ss_pred             hhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHhhcccC-CC
Q 025803           24 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASEED-DT   99 (248)
Q Consensus        24 ~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~~~--~i~~~gG~~Ll~~a~k~~~~~~~-~~   99 (248)
                      +|.-+.++++..     -++||+-.+.|+.+|. .+-+.-...|-+..+-+|  |..+..|...+-.|+|++.++.+ ++
T Consensus        17 GDKT~lia~llA-----~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~~~~   91 (190)
T COG2119          17 GDKTQLIAMLLA-----MRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKEDDE   91 (190)
T ss_pred             ccHHHHHHHHHH-----HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence            799999999887     3667889999999995 777777777777765556  78888888888889999886532 22


Q ss_pred             CcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHH---HHHHHHHHHHHhccchhHHHHHhc---CChhHHHHH
Q 025803          100 DLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLL---TVAVIELSDIAFAVDSIPAVFGVT---RDPFIVFSS  173 (248)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~---~v~~Ie~~Dl~FSlDSV~A~~ait---~~~~li~~g  173 (248)
                      |++..                         .+.   .++..   .+..=|+=|     -+=+|.++++   ++++.++.|
T Consensus        92 e~~~~-------------------------~~~---~~f~~tfi~~FlaE~GD-----KTQiATIaLaA~~~~~~~V~~G  138 (190)
T COG2119          92 EAQAA-------------------------SPR---GVFVTTFITFFLAELGD-----KTQIATIALAADYHSPWAVFAG  138 (190)
T ss_pred             ccccc-------------------------ccc---cHHHHHHHHHHHHHhcc-----HHHHHHHHHhhcCCCceeeehh
Confidence            22100                         000   12222   233334434     2344555554   345778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-h--hcHHHHHHHHHHHHHHHHhHhh
Q 025803          174 NLFAILGLRSLFTLISEGMAD-L--EYLQPSIAVVLGFIGCKMILDY  217 (248)
Q Consensus       174 ~~~ai~~lr~l~~~~~~~l~k-~--~~L~~~~~~iL~~ig~klll~~  217 (248)
                      -.+|.+.--...-..-+++.+ .  +.++..+.......|..++.+.
T Consensus       139 t~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~  185 (190)
T COG2119         139 TTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQV  185 (190)
T ss_pred             hHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766655555555444433 2  2455566666666776666654

>COG1279 Lysine efflux permease [General function prediction only]

Probab=86.59  E-value=22  Score=31.31  Aligned_cols=75  Identities=20%  Similarity=0.171  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhchH----HHHHHHHH
Q 025803           12 EYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT----ATLQRFEA----VNLVLAGI   83 (248)
Q Consensus        12 f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~----~ll~~~~~----i~~~gG~~   83 (248)
                      |+-+.-+=..++..|++|+-.-.+        |++++..-+.- .+.=.+++..++    .++++.||    +.+.|.+|
T Consensus         9 fll~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~c-~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~F   79 (202)
T COG1279           9 FLLGASLILPIGAQNAFVLNQGIR--------REYVLPIALLC-AISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAF   79 (202)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHh--------hccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            333444556779999999876332        34554443332 334444444433    35556666    56779999


Q ss_pred             HHHHHHHHhhcc
Q 025803           84 LLFSSFKLFASE   95 (248)
Q Consensus        84 Ll~~a~k~~~~~   95 (248)
                      |+|.|++-+++.
T Consensus        80 Ll~yg~~a~~~a   91 (202)
T COG1279          80 LLYYGLLALKSA   91 (202)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00