Citrus Sinensis ID: 025815

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MGHLLSPPIPRSIFFPSFIYLTALIPFPAPNLSHIKIVSFPFQSLMSAAVSAAAAAACCSSKSSGTTTSRTTTTAARTHHSMLFSSPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRDVRDVQAEARGMIGYDQKKTRKNNYMPHHIQQQEQYYD
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHccccccccEEEEEEEccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccEEEccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHcHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHcccHHHHHHHHHHHHHccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccEEcHHHcccccccccccHHHHHHccc
Coil and Loop (DISEMBL)
mghllsppiprsiffpsfiyltalipfpapnlshikivsfPFQSLMSAAVSAAAAAACcsskssgtttsrttTTAArthhsmlfsspqasiqspvvsfgryeaqkrrDWDTFMQYLsqhrpplalsrcsgaHVLEFLKYLDQFgktkvhaqscplfghahapapcrcpmmqaWGSLDALVGRLRAAyeenggqpeinpfsARAVRLYLRDVRDVQAEARgmigydqkktrknnymphhiqqqeqyyd
Flexible Loop (DISEMBL)
mghllsppiprSIFFPSFIYLTALIPFPAPNLSHIKIVSFPFQSLMSAAVSAAAAAACcsskssgtttsrTTTTAARTHHSmlfsspqasiqspvVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYeenggqpeinpfsARAVRLYLRDVRDVQAeargmigydqkktrknnymphhiqqqeqyyd
Low Complexity Region (SEG)
MGHLLsppiprsiffpsfiYLTALIPFPAPNLSHIKIVSFPFQSLMsaavsaaaaaaccsskssgtttsrttttaarthhsMLFSSPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRDVRDVQAEARGMIGYDQKKTRKNNYMPHHIQQQEQYYD
Disordered region (IsUnstruct)
*********PRSIFFPSFIYLTALIPFPAPNLSHIKIVSFPFQSLMSAAVSAAAAAACC***********************************VVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRDVRDVQAEARGMIGY***********************
Disordered Region (DISOPRED)
********IPRSIFFPSFIYLTALIPFPAPNLSHIKIVSFPFQSL*****************************************************************TFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSC*********APCRCPMMQAWGSLDALVGRLRA***************ARAVRLYLRDVRDVQA*******************************
Disordered Region (DISEMBL)
MGHLLSPPIPRSIFFPSFIYLTALIPFPAPNLSHIKIVSFPFQSLMS****************************ARTHHSMLFSSPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRDVRDVQAEARGMIGYDQKKTRKNNYMPHHI********
Disordered Region (DISPRO)
****LSPPIPRSIFFPSFIYLTALIPFPAPNLSHIKIVSFPFQSLMSAAV***********************************************FGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRDVRDVQAEARGMIGYDQKKTRKN***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGHLLSPPIPRSIFFPSFIYLTALIPFPAPNLSHIKIVSFPFQSLMSAAVSAAAAAACCSSKSSGTTTSRTTTTAARTHHSMLFSSPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRDVRDVQAEARGMIGYDQKKTRKNNYMPHHIQQQEQYYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
356524906	247	PREDICTED: uncharacterized protein LOC10	0.578	0.578	0.719	6e-57
358348199	420	hypothetical protein MTR_119s0026 [Medic	0.574	0.338	0.705	8e-57
18390725	196	uncharacterized protein [Arabidopsis tha	0.566	0.714	0.702	3e-56
356510740	236	PREDICTED: uncharacterized protein LOC10	0.578	0.605	0.712	3e-56
224105897	223	predicted protein [Populus trichocarpa]	0.587	0.650	0.691	3e-56
270309068	225	G1-like protein [Selaginella moellendorf	0.530	0.582	0.765	4e-56
297848996	198	hypothetical protein ARALYDRAFT_887918 [	0.566	0.707	0.695	7e-56
302783941	153	hypothetical protein SELMODRAFT_36560 [S	0.615	0.993	0.648	8e-56
224055375	228	predicted protein [Populus trichocarpa]	0.558	0.605	0.719	3e-55
356537589	235	PREDICTED: uncharacterized protein LOC10	0.591	0.621	0.682	8e-55

>gi|356524906|ref|XP_003531069.1| PREDICTED: uncharacterized protein LOC100798406 [Glycine max]

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 105/146 (71%), Positives = 122/146 (83%), Gaps = 3/146 (2%)

Query: 86  SPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGK 145
           +PQ    SP +S  RYE+QKRRDW+TF QYL  HRPPL LSRCSGAHVLEFL+YLDQFGK
Sbjct: 36  TPQRVCVSPPLS--RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGK 93

Query: 146 TKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVR 205
           TKVHA++C  FG++H P PC CP+ QAWGSLDAL+GRLRAA+EENGG PE+NPF  RAVR
Sbjct: 94  TKVHAETCGYFGNSHPPGPCACPLRQAWGSLDALIGRLRAAFEENGGAPEMNPFGTRAVR 153

Query: 206 LYLRDVRDVQAEARGMIGYDQKKTRK 231
           LYLR+VRD QA+ARG I Y++KK RK
Sbjct: 154 LYLREVRDAQAKARG-IAYEKKKRRK 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348199|ref|XP_003638136.1| hypothetical protein MTR_119s0026 [Medicago truncatula] gi|355504071|gb|AES85274.1| hypothetical protein MTR_119s0026 [Medicago truncatula]

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 103/146 (70%), Positives = 122/146 (83%), Gaps = 4/146 (2%)

Query: 88  QASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTK 147
           Q S+  P+    RYE+QKRRDW+TF QYL  HRPPL LSRCSGAHVLEFL+YLDQFGKTK
Sbjct: 37  QVSVAPPLS---RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTK 93

Query: 148 VHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLY 207
           VH+++C  FG++H P PC CP+ QAWGSLDAL+GRLRAA+EENGG  E+NPF ARAVRLY
Sbjct: 94  VHSENCAYFGNSHPPGPCPCPLKQAWGSLDALIGRLRAAFEENGGSQEMNPFGARAVRLY 153

Query: 208 LRDVRDVQAEARGMIGYDQKKTRKNN 233
           LR+VRD QA+ARG IGY++KK +K N
Sbjct: 154 LREVRDAQAKARG-IGYEKKKRKKLN 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390725|ref|NP_563780.1| uncharacterized protein [Arabidopsis thaliana] gi|8954037|gb|AAF82211.1|AC067971_19 Strong similarity to an unknown protein At2g31160 gi|3746060 from Arabidopsis thaliana BAC F7F1 gb|AC005311. EST gb|AI998165 comes from this gene [Arabidopsis thaliana] gi|21555695|gb|AAM63916.1| unknown [Arabidopsis thaliana] gi|28392914|gb|AAO41893.1| unknown protein [Arabidopsis thaliana] gi|56236136|gb|AAV84524.1| At1g07090 [Arabidopsis thaliana] gi|88193786|gb|ABD42982.1| At1g07090 [Arabidopsis thaliana] gi|332189955|gb|AEE28076.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 121/141 (85%), Gaps = 1/141 (0%)

Query: 91  IQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHA 150
           + SP  +  RYE+QKRRDW+TF+QYL  H+PPLALSRCSGAHV+EFLKYLDQFGKTKVH 
Sbjct: 22  VSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHV 81

Query: 151 QSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRD 210
            +CP FGH   P+PC CP+ QAWGSLDAL+GRLRAAYEENGG+P+ NPF+ARAVR+YLR+
Sbjct: 82  AACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLRE 141

Query: 211 VRDVQAEARGMIGYDQKKTRK 231
           VR+ QA+ARG I Y++KK ++
Sbjct: 142 VRESQAKARG-IPYEKKKRKR 161

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510740|ref|XP_003524092.1| PREDICTED: uncharacterized protein LOC100775838 [Glycine max]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 121/146 (82%), Gaps = 3/146 (2%)

Query: 86  SPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGK 145
           +PQ    SP +S  RYE+QKRRDW+TF QYL  HRPPL LSRCSGAHVLEFL+YLDQFGK
Sbjct: 35  TPQRVCVSPPLS--RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGK 92

Query: 146 TKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVR 205
           TKVHA++C  FG++H P PC CP+ QAWGSLDAL+GRLRAA+EENGG PE+NPF  RAVR
Sbjct: 93  TKVHAETCAYFGNSHPPGPCACPLRQAWGSLDALIGRLRAAFEENGGTPEMNPFGTRAVR 152

Query: 206 LYLRDVRDVQAEARGMIGYDQKKTRK 231
           LYLR+VRD QA+ARG I Y++KK R 
Sbjct: 153 LYLREVRDAQAKARG-IAYEKKKRRN 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105897|ref|XP_002313971.1| predicted protein [Populus trichocarpa] gi|222850379|gb|EEE87926.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/146 (69%), Positives = 120/146 (82%), Gaps = 1/146 (0%)

Query: 88  QASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTK 147
           Q    SP     RYE+QKRRDW+TF+QYL  H+PPL L+RCSGAHV+EFLKYLDQFGKTK
Sbjct: 36  QPEGSSPPAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTK 95

Query: 148 VHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLY 207
           VH   CP FGH + PAPC CP+ QAWGSLDAL+GRLRAAYEENGG+PE NPF ARAVR+Y
Sbjct: 96  VHITGCPYFGHPNPPAPCSCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRIY 155

Query: 208 LRDVRDVQAEARGMIGYDQKKTRKNN 233
           LR+VR+ QA+ARG I Y++KK +++N
Sbjct: 156 LREVREGQAKARG-IPYEKKKRKRSN 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270309068|dbj|BAI52974.1| G1-like protein [Selaginella moellendorffii]

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/132 (76%), Positives = 118/132 (89%), Gaps = 1/132 (0%)

Query: 100 RYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHA 159
           RYEAQKRRDW+TF QYL  HRPPLALSRCSGAHVLEFL+YLDQFGKTK+HA +CP FG A
Sbjct: 37  RYEAQKRRDWNTFGQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKIHAPACPFFGLA 96

Query: 160 HAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRDVRDVQAEAR 219
           H PAPC CP+ QAWGSLDAL+GRLRAA+EE+GG+PE NPF ARAVRLYLR+VR++QA+AR
Sbjct: 97  HPPAPCACPLRQAWGSLDALIGRLRAAFEEHGGKPESNPFGARAVRLYLREVREMQAKAR 156

Query: 220 GMIGYDQKKTRK 231
           G I Y++KK ++
Sbjct: 157 G-IAYEKKKRKR 167

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848996|ref|XP_002892379.1| hypothetical protein ARALYDRAFT_887918 [Arabidopsis lyrata subsp. lyrata] gi|297338221|gb|EFH68638.1| hypothetical protein ARALYDRAFT_887918 [Arabidopsis lyrata subsp. lyrata]

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 98/141 (69%), Positives = 120/141 (85%), Gaps = 1/141 (0%)

Query: 91  IQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHA 150
           + SP  +  RYE+QKRRDW+TF+QYL  H+PPLALSRCSGAHV+EFLKYLDQFGKTKVH 
Sbjct: 24  VSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHV 83

Query: 151 QSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRD 210
            +CP FGH   P+PC CP+ QAWGSLDAL+GRLRAAYEENGG+P+ NPF+ RAVR+YLR+
Sbjct: 84  AACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFATRAVRIYLRE 143

Query: 211 VRDVQAEARGMIGYDQKKTRK 231
           VR+ QA+ARG I Y++KK ++
Sbjct: 144 VRESQAKARG-IPYEKKKRKR 163

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302783941|ref|XP_002973743.1| hypothetical protein SELMODRAFT_36560 [Selaginella moellendorffii] gi|302788045|ref|XP_002975792.1| hypothetical protein SELMODRAFT_36559 [Selaginella moellendorffii] gi|300156793|gb|EFJ23421.1| hypothetical protein SELMODRAFT_36559 [Selaginella moellendorffii] gi|300158781|gb|EFJ25403.1| hypothetical protein SELMODRAFT_36560 [Selaginella moellendorffii]

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 109/168 (64%), Positives = 130/168 (77%), Gaps = 16/168 (9%)

Query: 64  SGTTTSRTTTTAARTHHSMLFSSPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPL 123
            G +TSR    A+            +S Q+P     RYEAQKRRDW+TF QYL  HRPPL
Sbjct: 1   GGASTSRADANAS------------SSQQAPP---SRYEAQKRRDWNTFGQYLKNHRPPL 45

Query: 124 ALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRL 183
           ALSRCSGAHVLEFL+YLDQFGKTK+HA +CP FG AH PAPC CP+ QAWGSLDAL+GRL
Sbjct: 46  ALSRCSGAHVLEFLRYLDQFGKTKIHAPACPFFGLAHPPAPCACPLRQAWGSLDALIGRL 105

Query: 184 RAAYEENGGQPEINPFSARAVRLYLRDVRDVQAEARGMIGYDQKKTRK 231
           RAA+EE+GG+PE NPF ARAVRLYLR+VR++QA+ARG I Y++KK ++
Sbjct: 106 RAAFEEHGGKPESNPFGARAVRLYLREVREMQAKARG-IAYEKKKRKR 152

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055375|ref|XP_002298496.1| predicted protein [Populus trichocarpa] gi|222845754|gb|EEE83301.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/139 (71%), Positives = 116/139 (83%), Gaps = 1/139 (0%)

Query: 93  SPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQS 152
           SP     RYE+QKRRDW+TF+QY+  H+PPL L+RCSGAHV+EFLKYLDQFGKTKVH   
Sbjct: 41  SPPAPPSRYESQKRRDWNTFLQYIKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHITG 100

Query: 153 CPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRDVR 212
           CP FGH + PAPC CP+ QAWGSLDAL+GRLRAAYEENGG PE NPF ARAVR+YLR+VR
Sbjct: 101 CPYFGHPNPPAPCSCPLKQAWGSLDALIGRLRAAYEENGGLPESNPFGARAVRIYLREVR 160

Query: 213 DVQAEARGMIGYDQKKTRK 231
           + QA+ARG I Y++KK RK
Sbjct: 161 EGQAKARG-IPYEKKKKRK 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537589|ref|XP_003537309.1| PREDICTED: uncharacterized protein LOC100775798 [Glycine max]

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 121/151 (80%), Gaps = 5/151 (3%)

Query: 85  SSPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFG 144
           + P+ S  +P+    RYE+QKRRDW+TF+QYL  HRPPL L+RCSGAHV+EFLKYLDQFG
Sbjct: 36  TQPEGSSPAPLS---RYESQKRRDWNTFLQYLQNHRPPLTLARCSGAHVIEFLKYLDQFG 92

Query: 145 KTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAV 204
           KTKVH   CP FGH + PAPC CP+ QAWGSLDAL+GRLRAAYEENGG+PE NPF ARAV
Sbjct: 93  KTKVHVTGCPYFGHPNPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFGARAV 152

Query: 205 RLYLRDVRDVQAEARGMIGYDQKKTRKNNYM 235
           R  LR+VR+ QA+ARG I Y++KK RK   M
Sbjct: 153 RTCLREVREGQAKARG-IPYEKKK-RKRTTM 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2007382	196	LSH6 "AT1G07090" [Arabidopsis	0.566	0.714	0.702	1.3e-54
TAIR|locus:2082170	195	LSH4 "LIGHT SENSITIVE HYPOCOTY	0.591	0.748	0.707	4.3e-54
TAIR|locus:2055897	219	LSH3 "AT2G31160" [Arabidopsis	0.591	0.666	0.680	5.5e-54
TAIR|locus:2147494	190	LSH1 "AT5G28490" [Arabidopsis	0.639	0.831	0.640	1.9e-53
TAIR|locus:2100850	201	LSH2 "AT3G04510" [Arabidopsis	0.647	0.796	0.611	6.5e-51
TAIR|locus:2171263	182	LSH5 "AT5G58500" [Arabidopsis	0.530	0.719	0.706	7.4e-50
TAIR|locus:2041514	177	LSH10 "AT2G42610" [Arabidopsis	0.578	0.807	0.625	3.3e-47
TAIR|locus:505006228	195	LSH7 "AT1G78815" [Arabidopsis	0.607	0.769	0.559	2.4e-44
TAIR|locus:2124067	191	LSH9 "AT4G18610" [Arabidopsis	0.554	0.717	0.604	9.3e-43
TAIR|locus:2015591	164	LSH8 "AT1G16910" [Arabidopsis	0.554	0.835	0.550	1.4e-39

TAIR|locus:2007382 LSH6 "AT1G07090" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 99/141 (70%), Positives = 121/141 (85%)

Query:    91 IQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHA 150
             + SP  +  RYE+QKRRDW+TF+QYL  H+PPLALSRCSGAHV+EFLKYLDQFGKTKVH 
Sbjct:    22 VSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHV 81

Query:   151 QSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRD 210
              +CP FGH   P+PC CP+ QAWGSLDAL+GRLRAAYEENGG+P+ NPF+ARAVR+YLR+
Sbjct:    82 AACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLRE 141

Query:   211 VRDVQAEARGMIGYDQKKTRK 231
             VR+ QA+ARG I Y++KK ++
Sbjct:   142 VRESQAKARG-IPYEKKKRKR 161

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082170 LSH4 "LIGHT SENSITIVE HYPOCOTYLS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 104/147 (70%), Positives = 118/147 (80%)

Query:    85 SSPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFG 144
             SS  +S  S      RYE QKRRDW+TF QYL  HRPPL+LSRCSGAHVLEFL+YLDQFG
Sbjct:    33 SSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFG 92

Query:   145 KTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAV 204
             KTKVH   CP FGH + PAPC CP+ QAWGSLDAL+GRLRAA+EENGG PE NPF ARAV
Sbjct:    93 KTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAV 152

Query:   205 RLYLRDVRDVQAEARGMIGYDQKKTRK 231
             RLYLR+VRD QA+ARG I Y++KK ++
Sbjct:   153 RLYLREVRDSQAKARG-ISYEKKKRKR 178

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2055897 LSH3 "AT2G31160" [Arabidopsis thaliana (taxid:3702)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 100/147 (68%), Positives = 121/147 (82%)

Query:    85 SSPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFG 144
             + P +S  SP  +  RYE QKRRDW+TF QYL  HRPPL+LSRCSGAHVLEFL+YLDQFG
Sbjct:    39 TQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFG 98

Query:   145 KTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAV 204
             KTKVH   C  +GH + PAPC CP+ QAWGSLDAL+GRLRAA+EENGG+PE NPF ARAV
Sbjct:    99 KTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAV 158

Query:   205 RLYLRDVRDVQAEARGMIGYDQKKTRK 231
             RLYLR+VRD+Q++ARG + Y++KK ++
Sbjct:   159 RLYLREVRDMQSKARG-VSYEKKKRKR 184

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2147494 LSH1 "AT5G28490" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 105/164 (64%), Positives = 124/164 (75%)

Query:    86 SPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGK 145
             +P +S Q    S  RYE QKRRDW+TF QYL  HRPPL+L  CSGAHVLEFL+YLDQFGK
Sbjct:    11 NPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 70

Query:   146 TKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVR 205
             TKVH Q+C  FG  + PAPC CP+ QAWGSLDAL+GRLRAAYEENGG PE NPF +RAVR
Sbjct:    71 TKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVR 130

Query:   206 LYLRDVRDVQAEARGMIGYDQKKTRKNNYMPH-----HIQQQEQ 244
             L+LR+VRD QA+ARG + Y++K+ R N   P       +QQQ+Q
Sbjct:   131 LFLREVRDFQAKARG-VSYEKKRKRVNRQKPQTQPPLQLQQQQQ 173

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009637 "response to blue light" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010114 "response to red light" evidence=IGI

GO:0010218 "response to far red light" evidence=IGI

TAIR|locus:2100850 LSH2 "AT3G04510" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 99/162 (61%), Positives = 122/162 (75%)

Query:    83 LFSSPQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQ 142
             L +   +S  SP  S  RYE QKRRDW+TF QYL  H PPL+L+ CSGAHVL+FL+YLDQ
Sbjct:    17 LSTQTPSSFSSPPSS-SRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQ 75

Query:   143 FGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSAR 202
             FGKTKVH Q+C  FG  + PAPC CP+ QAWGSLDAL+GRLRAAYEENGG PE +PF +R
Sbjct:    76 FGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSR 135

Query:   203 AVRLYLRDVRDVQAEARGMIGYDQKKTRKNNYMPHHIQQQEQ 244
             +VR++LR+VRD QA++RG + Y++K+ R NN      Q Q Q
Sbjct:   136 SVRIFLREVRDFQAKSRG-VSYEKKRKRVNNKQITQSQPQSQ 176

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171263 LSH5 "AT5G58500" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 94/133 (70%), Positives = 113/133 (84%)

Query:   100 RYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHA 159
             RYE+QKRRDW+TF+QYL  H+PPL LSRCSGAHVLEFLKYLDQFGKTKVHA +CP FG  
Sbjct:    19 RYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQP 78

Query:   160 HAPAPCRCPMMQAWGSLDALVGRLRAAYEE-NGGQPEINPFSARAVRLYLRDVRDVQAEA 218
             + P+ C CP+ QAWGSLDAL+GRLRAA+EE  GG PE NPF+A+AVR+YL++VR  QA+A
Sbjct:    79 NPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQAKA 138

Query:   219 RGMIGYDQKKTRK 231
             RG I YD+KK ++
Sbjct:   139 RG-IPYDKKKRKR 150

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2041514 LSH10 "AT2G42610" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 90/144 (62%), Positives = 111/144 (77%)

Query:    88 QASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTK 147
             ++S   P V+  RYE+QKRRDW+TF QYL   RPP+ +S CS  HVL+FL+YLDQFGKTK
Sbjct:    13 ESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTK 72

Query:   148 VHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLY 207
             VH   C  +G    PAPC CP+ QAWGSLDAL+GRLRAAYEENGG PE NPF++ A+R+Y
Sbjct:    73 VHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVY 132

Query:   208 LRDVRDVQAEARGMIGYDQKKTRK 231
             LR+VR+ QA+ARG I Y +KK +K
Sbjct:   133 LREVRECQAKARG-IPYKKKKKKK 155

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006228 LSH7 "AT1G78815" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 85/152 (55%), Positives = 108/152 (71%)

Query:    87 PQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKT 146
             PQ+    P +S  RYE+QKRRDW+TF QYL   +PP+ +S+C   H+L+FL+YLDQFGKT
Sbjct:    29 PQSPPNPPALS--RYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKT 86

Query:   147 KVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRL 206
             KVH   C  FG       C CP+ QAWGSLDAL+GRLRAA+EENGG PE NPF+   +R+
Sbjct:    87 KVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRV 146

Query:   207 YLRDVRDVQAEARGMIGYDQKKTRKNNYMPHH 238
             +LR+VRD QA+ARG+    +KK +K N M  H
Sbjct:   147 FLREVRDSQAKARGVPYKKRKKRKKRNPMKSH 178

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

TAIR|locus:2124067 LSH9 "AT4G18610" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 84/139 (60%), Positives = 104/139 (74%)

Query:    94 PVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSC 153
             P     RYE+QKRRDW+TF+QYL    PPL +S+    HVL FL+YLDQFGKTKVH Q+C
Sbjct:    31 PQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQAC 90

Query:   154 PLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGG-QPEINPFSARAVRLYLRDVR 212
               FG    P PC CP+ QAWGSLDAL+GRLRAAYEE+GG  P+ NPF+  ++R++LR+VR
Sbjct:    91 VFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVR 150

Query:   213 DVQAEARGMIGYDQKKTRK 231
             + QA+ARG I Y +KK RK
Sbjct:   151 ESQAKARG-IPYRKKKRRK 168

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2015591 LSH8 "AT1G16910" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 76/138 (55%), Positives = 97/138 (70%)

Query:    91 IQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHA 150
             ++ P  +  RYE+QK RDW+TF QYL    PP+ +  C   H+L+FL+  DQFGKTKVH 
Sbjct:    14 VEGPPPTLSRYESQKSRDWNTFCQYLMTKMPPVHVWECESNHILDFLQSRDQFGKTKVHI 73

Query:   151 QSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRD 210
             Q C  FG    P  C CP+ QAWGSLDAL+GRLRAAYEENGG  E NPF+   +R++LR+
Sbjct:    74 QGCVFFGQKEPPGECNCPLKQAWGSLDALIGRLRAAYEENGGLTEKNPFARGGIRIFLRE 133

Query:   211 VRDVQAEARGMIGYDQKK 228
             VR  QA+ARG++ Y +KK
Sbjct:   134 VRGSQAKARGVL-YKKKK 150

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: LSH6 LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6); LIGHT SENSITIVE HYPOCOTYLS 6 (LSH6); FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF640 (InterPro-IPR006936); BEST Arabidopsis thaliana protein match is- LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) (TAIR-AT5G58500.1); Has 185 Blast hits to 185 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 171; Viruses - 0; Other Eukar [...] (196 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
pfam04852	133	pfam04852, DUF640, Protein of unknown function (DU	6e-68

>gnl|CDD|191112 pfam04852, DUF640, Protein of unknown function (DUF640)

 Score =  205 bits (523), Expect = 6e-68
 Identities = 89/127 (70%), Positives = 104/127 (81%)

Query: 87  PQASIQSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKT 146
            + S +SP  +  RYE+QKRRDW+TF QYL   RPPL LS+CSG HVL+FL+YLDQFGKT
Sbjct: 6   SECSSRSPPPALSRYESQKRRDWNTFCQYLRNQRPPLNLSKCSGNHVLDFLRYLDQFGKT 65

Query: 147 KVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAYEENGGQPEINPFSARAVRL 206
           KVH Q+C  FGH   PAPC CP+ QAWGSLDAL+GRLRAA+EE+GG PE NPF+ARAVRL
Sbjct: 66  KVHGQACGFFGHPSPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGHPEENPFAARAVRL 125

Query: 207 YLRDVRD 213
           YLR+VRD
Sbjct: 126 YLREVRD 132

This family represents a conserved region found in plant proteins including Resistance protein-like protein. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
PF04852	132	DUF640: Protein of unknown function (DUF640); Inte	100.0
PF08821	107	CGGC: CGGC domain; InterPro: IPR014925 Proteins in	89.63
PF02899	84	Phage_int_SAM_1: Phage integrase, N-terminal SAM-l	88.01
cd00798	284	INT_XerDC XerD and XerC integrases, DNA breaking-r	84.29

>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT)

Probab=100.00  E-value=2e-74  Score=472.62  Aligned_cols=123  Identities=75%  Similarity=1.349  Sum_probs=119.3

Q ss_pred             CCCCCCCchhHHhhhhhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhh
Q 025815           92 QSPVVSFGRYEAQKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQ  171 (247)
Q Consensus        92 ~~~~~~~SRYesQKRrDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQ  171 (247)
                      .++++++||||+|||||||||+|||+||+||++|++|+|+|||+||+|+|||||||||.++|+|||+|+||+||+|||||
T Consensus        10 ~~~~~~~SrYesQKrrdwntf~qyL~n~rPP~~L~~csg~hVl~FL~~~d~~GkTkVh~~~C~~~g~~~~p~~C~CPlrq   89 (132)
T PF04852_consen   10 RSPQPAPSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGNHVLEFLRYLDQFGKTKVHGQGCPFFGHPSPPAPCPCPLRQ   89 (132)
T ss_pred             CCCCCCCcccchhhhHHHHHHHHHHHccCCCcchhhcChHHHHHHHHHHhccCCeeecCCCCCCCCCCCCCCCCCCcHHH
Confidence            34455789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHHHhHHH
Q 025815          172 AWGSLDALVGRLRAAYEENGGQPEINPFSARAVRLYLRDVRDV  214 (247)
Q Consensus       172 AWGSLDALIGRLRAAfEE~GG~PE~NPF~araVRlYLReVRd~  214 (247)
                      |||||||||||||||||||||+||+|||+++|||+|||||||+
T Consensus        90 AwGSlDalIGrLraafee~Gg~pe~NPf~~~~vr~yLr~vr~~  132 (132)
T PF04852_consen   90 AWGSLDALIGRLRAAFEEHGGHPEANPFAARAVRLYLREVRDS  132 (132)
T ss_pred             HhccHHHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999985

>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region

Probab=89.63  E-value=0.54  Score=37.47  Aligned_cols=55  Identities=24%  Similarity=0.572  Sum_probs=45.1

Q ss_pred             CccccCc---chhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHHHH
Q 025815          123 LALSRCS---GAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRAAY  187 (247)
Q Consensus       123 lsLs~Cs---g~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAf  187 (247)
                      +.+.+|.   +..++..++.+-..|-..||.-+|...+.+.+    +||.      +|.++-.|+++|
T Consensus        41 vgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~----~CP~------~~~~~~~I~~~~   98 (107)
T PF08821_consen   41 VGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG----PCPH------IDEIKKIIEEKF   98 (107)
T ss_pred             EEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC----CCCC------HHHHHHHHHHHh
Confidence            4444554   58899999999999999999999999987664    6666      899999998887

The region has many conserved cysteines and histidines suggestive of a zinc binding function.

>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]

Probab=88.01  E-value=0.74  Score=31.79  Aligned_cols=40  Identities=28%  Similarity=0.517  Sum_probs=31.8

Q ss_pred             hhhhhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhcccc
Q 025815          104 QKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFG  144 (247)
Q Consensus       104 QKRrDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfG  144 (247)
                      .-+++++.|.+|+.+ ....++..++..||.+|+.++-+.|
T Consensus        21 ~Y~~~l~~f~~~~~~-~~~~~~~~i~~~~v~~f~~~~~~~~   60 (84)
T PF02899_consen   21 SYRRDLRRFIRWLEE-HGIIDWEDITEEDVRDFLEYLAKEG   60 (84)
T ss_dssp             HHHHHHHHHHHHHHH-TTS-CGGG--HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhh-hhhhhhhhhhhHHHHHHHHHHHccC
Confidence            446789999999999 6667788999999999999988766

The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.

>cd00798 INT_XerDC XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains

Probab=84.29  E-value=3.7  Score=32.47  Aligned_cols=69  Identities=22%  Similarity=0.286  Sum_probs=48.5

Q ss_pred             hhhhhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHH
Q 025815          104 QKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRL  183 (247)
Q Consensus       104 QKRrDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRL  183 (247)
                      +-+..|+.|.+|+....... +..-+..||.+|+.++.+.|                          ....++...++-|
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~l   73 (284)
T cd00798          21 AYRRDLERFLEFLEERGILF-PADVTPDDIRRFLAELKDQG--------------------------LSARSIARKLSAL   73 (284)
T ss_pred             HHHHHHHHHHHHHHHcCCCc-hhhCCHHHHHHHHHHhhhcC--------------------------CCHHHHHHHHHHH
Confidence            44567899999998754432 56778999999999887644                          1335777788888


Q ss_pred             HHHHHHhC--CCCCCCcc
Q 025815          184 RAAYEENG--GQPEINPF  199 (247)
Q Consensus       184 RAAfEE~G--G~PE~NPF  199 (247)
                      +++|.-..  |.-+.||+
T Consensus        74 ~~~~~~~~~~~~~~~~p~   91 (284)
T cd00798          74 RSFFKFLLREGLILANPA   91 (284)
T ss_pred             HHHHHHHHHcCCccCChh
Confidence            88887322  34456887

XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination of chromosomal replication, and stable plasmid inheritance. They share the same fold in their catalytic domain containing six conserved active site residues and the overall reaction mechanism with the DNA breaking-rejoining enzyme superfamily. In Escherichia coli, the Xer site-specific recombination system acts to convert dimeric chromosomes, which are formed by homologous recombination to monomers. Two related recombinases, XerC and XerD, bind cooperatively to a recombination site present in the E. coli chromosome. Each recombinase catalyzes the exchange of one pair of DNA strand in a reaction that proceeds through a Holliday junction intermediate. These enzymes can bridge two different and well-separated DNA sequen

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
1xo0_A	324	Recombinase CRE; CRE recombinase, holliday junctio	88.78
3nrw_A	117	Phage integrase/site-specific recombinase; alpha-h	82.77

>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...

Probab=88.78  E-value=0.68  Score=36.20  Aligned_cols=70  Identities=14%  Similarity=0.155  Sum_probs=52.2

Q ss_pred             hhhhhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHH
Q 025815          104 QKRRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRL  183 (247)
Q Consensus       104 QKRrDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRL  183 (247)
                      .-+++|+.|..|+.+..  +.+...+..||.+|+.++-..|                          .+..++...+..|
T Consensus        25 ~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l   76 (324)
T 1xo0_A           25 MLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQL   76 (324)
T ss_dssp             HHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHHH
Confidence            44678899999998763  3466778999999999875322                          2557889999999


Q ss_pred             HHHHHHhCCC-CCCCccch
Q 025815          184 RAAYEENGGQ-PEINPFSA  201 (247)
Q Consensus       184 RAAfEE~GG~-PE~NPF~a  201 (247)
                      ++.|+-.+.. +..||+..
T Consensus        77 ~~~~~~~~~~~~~~np~~~   95 (324)
T 1xo0_A           77 NMLHRRSGLPRPSDSNAVS   95 (324)
T ss_dssp             HHHHHHHTSCCGGGSHHHH
T ss_pred             HHHHHHcCCCCCCcCHHHH
Confidence            9999987643 34688754

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}

Probab=82.77  E-value=3.9  Score=28.83  Aligned_cols=68  Identities=12%  Similarity=0.078  Sum_probs=47.0

Q ss_pred             hhhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHH
Q 025815          106 RRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRA  185 (247)
Q Consensus       106 RrDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRA  185 (247)
                      +++++.|..||.... -..+...+..||.+|+.|+-..|                          .+..|+-..+.-||+
T Consensus        33 ~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~~--------------------------~s~~Ti~~~ls~lr~   85 (117)
T 3nrw_A           33 RYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGSD--------------------------VSPATLNGEMQTLKN   85 (117)
T ss_dssp             HHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTSS--------------------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHH
Confidence            568888999987632 12566778899999998874311                          244677778888888


Q ss_pred             HHHHh--CCCCCCCccc
Q 025815          186 AYEEN--GGQPEINPFS  200 (247)
Q Consensus       186 AfEE~--GG~PE~NPF~  200 (247)
                      .|+-.  -|--+.||+.
T Consensus        86 f~~~l~~~g~i~~nP~~  102 (117)
T 3nrw_A           86 WLEYLARIDVVDEDLPE  102 (117)
T ss_dssp             HHHHHHHTTSSCTTSGG
T ss_pred             HHHHHHHcCCcccCHHH
Confidence            87643  2445688874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1f44a1	110	Cre recombinase {Bacteriophage P1 [TaxId: 10678]}	97.47

>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Cre recombinase
species: Bacteriophage P1 [TaxId: 10678]

Probab=97.47  E-value=0.00027  Score=50.99  Aligned_cols=81  Identities=19%  Similarity=0.279  Sum_probs=66.1

Q ss_pred             hhhHhHHHHHHHhcCCCCccccCcchhhhHHhhhhccccccccccCCCccccCCCCCCCCCCchhhhhchhHHHHHHHHH
Q 025815          106 RRDWDTFMQYLSQHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHAQSCPLFGHAHAPAPCRCPMMQAWGSLDALVGRLRA  185 (247)
Q Consensus       106 RrDWntf~qyL~nhrPPlsLs~Csg~hVleFLrylDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRA  185 (247)
                      ++||+.|.+|+.++.-  +...++.++|.+||.++-.-|                          .+..|+.--|.-||.
T Consensus        27 ~~dl~~f~~w~~~~~~--~~l~~~~~~v~~yl~~l~~~g--------------------------~s~sTi~R~lsair~   78 (110)
T d1f44a1          27 LSVCRSWAAWCKLNNR--KWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQLNM   78 (110)
T ss_dssp             HHHHHHHHHHHHHTTC--CTTTTCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc--cccchhhhHHHHHHHHHHhcC--------------------------CCccHHHHHHHHHHH
Confidence            5799999999998864  455689999999999885433                          355688999999999


Q ss_pred             HHHHhCCCCCCCccchhhHHHHHHHhHHHHHh
Q 025815          186 AYEENGGQPEINPFSARAVRLYLRDVRDVQAE  217 (247)
Q Consensus       186 AfEE~GG~PE~NPF~araVRlYLReVRd~QAK  217 (247)
                      .|...|-.   ||..+..|++-|+-+|-....
T Consensus        79 f~r~~g~~---~p~~~~~V~~~l~~i~R~~~~  107 (110)
T d1f44a1          79 LHRRSGLP---RPSDSNAVSLVMRRIRKENVD  107 (110)
T ss_dssp             HHHHTTCC---CGGGSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCC---CCcCCHHHHHHHHHccccccC
Confidence            99888753   799999999999888866554