Citrus Sinensis ID: 025862

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHcccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccEEEEEEEEcccccccHHHHHHHccccccccHHHHHHHcccccHHHHHHHHHccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEHHHHcccccccHHHHHHHcccccccccccHEEEcccHHHHHHHHEccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHEEEEEHHcccccccHHHHHHHcHHcccccHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcc
Coil and Loop (DISEMBL)
MIDNVVLIVTGTLHERDVQELLEkchplgmfdSIATLAVAQNMRELYRLVLVdtplapyfsecitsedlddmnIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSigteltrddRRKLYSNFgllypygheelavcEDIDQvrgvmekyppyqsifsklsygesqmlDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVaqnqksrvhdsVVFIF
Flexible Loop (DISEMBL)
midnvvlivtgtlherdVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECitsedlddmnIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITinsigteltrddrRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECvaqnqksrvhdsvvfif
Low Complexity Region (SEG)
MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
Disordered region (IsUnstruct)
***NVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVF**
Disordered Region (DISOPRED)
MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLS**ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
Disordered Region (DISEMBL)
MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
Disordered Region (DISPRO)
MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q9LJI5	351	V-type proton ATPase subu	yes	no	1.0	0.703	0.951	1e-141
Q9LHA4	351	V-type proton ATPase subu	yes	no	1.0	0.703	0.947	1e-140
Q8RU33	351	Probable V-type proton AT	yes	no	1.0	0.703	0.943	1e-139
P54641	356	V-type proton ATPase subu	yes	no	0.967	0.671	0.601	2e-85
Q9W4P5	350	V-type proton ATPase subu	yes	no	0.991	0.7	0.562	7e-79
Q25531	348	V-type proton ATPase subu	N/A	no	0.991	0.704	0.546	3e-76
Q5ZHL0	351	V-type proton ATPase subu	yes	no	0.983	0.692	0.516	1e-75
P51863	351	V-type proton ATPase subu	yes	no	0.995	0.700	0.536	6e-75
Q5R6I1	351	V-type proton ATPase subu	yes	no	0.995	0.700	0.536	6e-75
P61421	351	V-type proton ATPase subu	yes	no	0.995	0.700	0.536	6e-75

>sp|Q9LJI5|VA0D1_ARATH V-type proton ATPase subunit d1 OS=Arabidopsis thaliana GN=VHA-D1 PE=2 SV=1

 Score =  500 bits (1287), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/247 (95%), Positives = 246/247 (99%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SEC+TSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct: 165 SECLTSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTR+DR+KLYSNFGLLYPYGHEELA+CEDIDQVRGVMEKYPPYQ+IFSK+SYG
Sbjct: 225 INSIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQMLDKAFYEEEV+RLCLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSR+H
Sbjct: 285 ESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIH 344

Query: 241 DSVVFIF 247
           DSVV++F
Sbjct: 345 DSVVYMF 351

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHA4|VA0D2_ARATH V-type proton ATPase subunit d2 OS=Arabidopsis thaliana GN=VHA-D2 PE=2 SV=1

 Score =  498 bits (1281), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 234/247 (94%), Positives = 245/247 (99%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SEC+TSEDLDDMNIEIMRNTLYKAYLEDFY FCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct: 165 SECLTSEDLDDMNIEIMRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTR+DR+KLYSNFGLLYPYGHEELA+CEDIDQVRGVMEKYPPYQ+IFSK+SYG
Sbjct: 225 INSIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQMLDKAFYEEEV+RLCLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSR+H
Sbjct: 285 ESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIH 344

Query: 241 DSVVFIF 247
           DSVV++F
Sbjct: 345 DSVVYMF 351

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RU33|VA0D_ORYSJ Probable V-type proton ATPase subunit d OS=Oryza sativa subsp. japonica GN=Os01g0587000 PE=2 SV=1

 Score =  494 bits (1271), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/247 (94%), Positives = 244/247 (98%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDV ELLEKCHPLGMFDSIA+LAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVNELLEKCHPLGMFDSIASLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFC+KLGGATAEIM DLL+FEADRRAVNIT
Sbjct: 165 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCEKLGGATAEIMCDLLSFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCED+DQVRGVMEKYPPYQ+IF+K+SYG
Sbjct: 225 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDVDQVRGVMEKYPPYQAIFAKISYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQMLDKAFYEEEV+RLCL+FEQQFHY VFFAY+RLREQEIRNLMWISECVAQNQK+RVH
Sbjct: 285 ESQMLDKAFYEEEVRRLCLSFEQQFHYAVFFAYIRLREQEIRNLMWISECVAQNQKNRVH 344

Query: 241 DSVVFIF 247
           DSVVFIF
Sbjct: 345 DSVVFIF 351

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P54641|VA0D_DICDI V-type proton ATPase subunit d OS=Dictyostelium discoideum GN=vatD-1 PE=1 SV=2

 Score =  315 bits (806), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 145/241 (60%), Positives = 191/241 (79%), Gaps = 2/241 (0%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVL++TGTLHERD+ EL++KCHPLG+F S+ATL+V  N+ +LY  VL+DTPLAPY 
Sbjct: 111 MIDNVVLLITGTLHERDISELVDKCHPLGLFKSMATLSVVHNVADLYNNVLIDTPLAPYI 170

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
             C++ EDLD+MNIEI+RNTLYKAYLEDFY +C+ LGG T  IMSD+L FEADRR++NIT
Sbjct: 171 QGCLSEEDLDEMNIEIIRNTLYKAYLEDFYNYCKYLGGQTELIMSDILKFEADRRSINIT 230

Query: 121 INSIG-TELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSY 179
           INS G TEL++DDR KLY + GLLYP G  +L   ED+DQVRG++E Y  Y++ FS    
Sbjct: 231 INSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSD-GV 289

Query: 180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
              + L+ +F+E EV    +AFE Q+ YGVF+AY++LREQEIRN++WI+EC++QN K ++
Sbjct: 290 NNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKM 349

Query: 240 H 240
           +
Sbjct: 350 N 350

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9W4P5|VA0D1_DROME V-type proton ATPase subunit d 1 OS=Drosophila melanogaster GN=VhaAC39-1 PE=2 SV=1

 Score =  293 bits (750), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 140/249 (56%), Positives = 189/249 (75%), Gaps = 4/249 (1%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDN++L++TGTLH+R + EL+ KCHPLG F+ +  + VA    ELY  VLVDTPLAP+F
Sbjct: 104 MIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVASTPAELYNAVLVDTPLAPFF 163

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
            +CI+ +DLD+MNIEI+RNTLYKAYLE FY FC+ +GGATA++M ++LAFEADRRA+ IT
Sbjct: 164 VDCISEQDLDEMNIEIIRNTLYKAYLEAFYNFCKNMGGATADVMCEILAFEADRRAIIIT 223

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIF--SKLS 178
           INS GTEL++DDR KLY N G +YP G   LA  +D +QV+ V E Y  Y ++F  S  +
Sbjct: 224 INSFGTELSKDDRAKLYPNCGKMYPDGLAALARADDYEQVKTVAEYYAEYAALFDGSGNN 283

Query: 179 YGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSR 238
            G+  + DK F+E EVK    AF QQFH+GVF+AY++L+EQE RN++WI+ECVAQ  +++
Sbjct: 284 PGDKTLEDK-FFEHEVKLDVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAK 342

Query: 239 VHDSVVFIF 247
           + D+ + IF
Sbjct: 343 I-DNYIPIF 350

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Drosophila melanogaster (taxid: 7227)

>sp|Q25531|VA0D_MANSE V-type proton ATPase subunit d OS=Manduca sexta PE=2 SV=1

 Score =  285 bits (728), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 136/249 (54%), Positives = 185/249 (74%), Gaps = 4/249 (1%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDN++L++TGTLH+R + EL+ KCHPLG F+ +  + VA    ELY  VLVDTPLAP+F
Sbjct: 102 MIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFF 161

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
            +CI+ +DLD+MNIEI+RNTLYKAYLE FY FC+++GG TA++M ++LAFEADRRA+ IT
Sbjct: 162 VDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKQIGGTTADVMCEILAFEADRRAIIIT 221

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL--S 178
           INS GTEL++DDR KLY   G L P G   LA  +D +QV+ V E Y  Y ++F     +
Sbjct: 222 INSFGTELSKDDRAKLYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNN 281

Query: 179 YGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSR 238
            G+  + DK F+E EV     AF QQFH+GVF++Y++L+EQE RN++WISECVAQ  +++
Sbjct: 282 VGDKTLEDK-FFEHEVNLNVHAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAK 340

Query: 239 VHDSVVFIF 247
           + D+ + IF
Sbjct: 341 I-DNYIPIF 348

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Manduca sexta (taxid: 7130)

>sp|Q5ZHL0|VA0D2_CHICK V-type proton ATPase subunit d 2 OS=Gallus gallus GN=ATP6V0D2 PE=2 SV=1

 Score =  283 bits (723), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 126/244 (51%), Positives = 181/244 (74%), Gaps = 1/244 (0%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDN++L++TGTLH+R + EL+ KCHPLG F+ +  +++A N  EL+  +LVDTPLA +F
Sbjct: 105 MIDNIILLITGTLHQRPIAELVPKCHPLGSFEQMEAVSIASNPTELFNAILVDTPLAAFF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
            +C++  DLD+MN+EIMRN LYK+YLE FYKFC+K GG TAEIM  +L FEADRRA  IT
Sbjct: 165 QDCLSENDLDEMNVEIMRNKLYKSYLEAFYKFCEKQGGTTAEIMKPILEFEADRRAFIIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INS GTEL+++DR KLY   G LYP G   LA  +D +QV+ V + Y  Y+++F  +   
Sbjct: 225 INSFGTELSKEDREKLYPTCGKLYPEGLHLLANADDYEQVKCVADYYAEYKAVFEGVGND 284

Query: 181 ESQ-MLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
             +  L+ AF+E E+K   LAF  QFH+GVF+AY++L+EQE RN++WI+EC++Q  ++++
Sbjct: 285 SGEKTLEDAFFEHEIKLNVLAFNNQFHFGVFYAYIKLKEQECRNIVWIAECISQRHRTKI 344

Query: 240 HDSV 243
           ++ +
Sbjct: 345 NNYI 348

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. May play a role in coupling of proton transport and ATP hydrolysis.

Gallus gallus (taxid: 9031)

>sp|P51863|VA0D1_MOUSE V-type proton ATPase subunit d 1 OS=Mus musculus GN=Atp6v0d1 PE=1 SV=2

 Score =  280 bits (716), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 183/248 (73%), Gaps = 2/248 (0%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNV+L++TGTLH+R + EL+ KCHPLG F+ +  + +AQ   ELY  +LVDTPLA +F
Sbjct: 105 MIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
            +CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC  LGG TA+ M  +L FEADRRA  IT
Sbjct: 165 QDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SY 179
           INS GTEL+++DR KL+ + G LYP G  +LA  +D +QV+ V + YP Y+ +F    S 
Sbjct: 225 INSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSN 284

Query: 180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
              + L+  F+E EVK   LAF  QFH+GVF+A+++L+EQE RN++WI+EC+AQ  ++++
Sbjct: 285 PGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI 344

Query: 240 HDSVVFIF 247
            D+ + IF
Sbjct: 345 -DNYIPIF 351

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. May play a role in coupling of proton transport and ATP hydrolysis.

Mus musculus (taxid: 10090)

>sp|Q5R6I1|VA0D1_PONAB V-type proton ATPase subunit d 1 OS=Pongo abelii GN=ATP6V0D1 PE=2 SV=1

 Score =  280 bits (716), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 183/248 (73%), Gaps = 2/248 (0%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNV+L++TGTLH+R + EL+ KCHPLG F+ +  + +AQ   ELY  +LVDTPLA +F
Sbjct: 105 MIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
            +CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC  LGG TA+ M  +L FEADRRA  IT
Sbjct: 165 QDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SY 179
           INS GTEL+++DR KL+ + G LYP G  +LA  +D +QV+ V + YP Y+ +F    S 
Sbjct: 225 INSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSN 284

Query: 180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
              + L+  F+E EVK   LAF  QFH+GVF+A+++L+EQE RN++WI+EC+AQ  ++++
Sbjct: 285 PGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI 344

Query: 240 HDSVVFIF 247
            D+ + IF
Sbjct: 345 -DNYIPIF 351

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. May play a role in coupling of proton transport and ATP hydrolysis.

Pongo abelii (taxid: 9601)

>sp|P61421|VA0D1_HUMAN V-type proton ATPase subunit d 1 OS=Homo sapiens GN=ATP6V0D1 PE=1 SV=1

 Score =  280 bits (716), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 183/248 (73%), Gaps = 2/248 (0%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNV+L++TGTLH+R + EL+ KCHPLG F+ +  + +AQ   ELY  +LVDTPLA +F
Sbjct: 105 MIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
            +CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC  LGG TA+ M  +L FEADRRA  IT
Sbjct: 165 QDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SY 179
           INS GTEL+++DR KL+ + G LYP G  +LA  +D +QV+ V + YP Y+ +F    S 
Sbjct: 225 INSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSN 284

Query: 180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
              + L+  F+E EVK   LAF  QFH+GVF+A+++L+EQE RN++WI+EC+AQ  ++++
Sbjct: 285 PGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI 344

Query: 240 HDSVVFIF 247
            D+ + IF
Sbjct: 345 -DNYIPIF 351

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. May play a role in coupling of proton transport and ATP hydrolysis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
449459460	351	PREDICTED: V-type proton ATPase subunit	1.0	0.703	0.987	1e-142
356531794	351	PREDICTED: V-type proton ATPase subunit	1.0	0.703	0.983	1e-141
296082862	305	unnamed protein product [Vitis vinifera]	1.0	0.809	0.975	1e-140
209981405	351	vacuolar ATPase subunit d [Vigna radiata	1.0	0.703	0.975	1e-140
225452712	351	PREDICTED: V-type proton ATPase subunit	1.0	0.703	0.975	1e-140
148907059	351	unknown [Picea sitchensis]	1.0	0.703	0.963	1e-140
255561094	351	vacuolar ATP synthase subunit ac39, puta	1.0	0.703	0.971	1e-140
357501685	351	V-type proton ATPase subunit d2 [Medicag	1.0	0.703	0.975	1e-140
224141359	351	predicted protein [Populus trichocarpa]	1.0	0.703	0.963	1e-139
15233060	351	V-type proton ATPase subunit d1 [Arabido	1.0	0.703	0.951	1e-139

>gi|449459460|ref|XP_004147464.1| PREDICTED: V-type proton ATPase subunit d2-like [Cucumis sativus] gi|449518539|ref|XP_004166299.1| PREDICTED: V-type proton ATPase subunit d2-like [Cucumis sativus]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/247 (98%), Positives = 246/247 (99%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SECITSEDLDDMNIEIMRNTLYKAYLEDFY+FCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct: 165 SECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTRDDRRKLYSNFGLLYPYGHEELA+CEDIDQVRG MEKYPPYQSIFSKLSYG
Sbjct: 225 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAICEDIDQVRGAMEKYPPYQSIFSKLSYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH
Sbjct: 285 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 344

Query: 241 DSVVFIF 247
           DSVVFIF
Sbjct: 345 DSVVFIF 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531794|ref|XP_003534461.1| PREDICTED: V-type proton ATPase subunit d2-like isoform 1 [Glycine max]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/247 (98%), Positives = 245/247 (99%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SECITSEDLDDMNIEIMRNTLYKAYLEDFY+FCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct: 165 SECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVR VMEKYPPYQSIF+KLSYG
Sbjct: 225 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRAVMEKYPPYQSIFAKLSYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQMLDKAFYEEEVKRLCLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSRVH
Sbjct: 285 ESQMLDKAFYEEEVKRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 344

Query: 241 DSVVFIF 247
           DSVVFIF
Sbjct: 345 DSVVFIF 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082862|emb|CBI22163.3| unnamed protein product [Vitis vinifera]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/247 (97%), Positives = 246/247 (99%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 59  MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 118

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SE ITSEDLDDMNIEIMRNTLYKAYLEDFY+FCQKLGGAT+EIMSDLLAFEADRRAVNIT
Sbjct: 119 SERITSEDLDDMNIEIMRNTLYKAYLEDFYQFCQKLGGATSEIMSDLLAFEADRRAVNIT 178

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTRDDR+KLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIF+K+SYG
Sbjct: 179 INSIGTELTRDDRKKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFAKMSYG 238

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH
Sbjct: 239 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 298

Query: 241 DSVVFIF 247
           DSVVFIF
Sbjct: 299 DSVVFIF 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209981405|gb|ACJ05375.1| vacuolar ATPase subunit d [Vigna radiata]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/247 (97%), Positives = 244/247 (98%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQELLEKCHPLGMFD IATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDRIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SECITSEDLDDMNIEIMRNTLYKAYLEDFY+FCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct: 165 SECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTRDDRRKLYSNFGLLYPYGHEELA+CEDIDQVR VMEKYPPYQSIF+KLSYG
Sbjct: 225 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAICEDIDQVRAVMEKYPPYQSIFAKLSYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQMLDKAFYEEEVKRLCLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSRVH
Sbjct: 285 ESQMLDKAFYEEEVKRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 344

Query: 241 DSVVFIF 247
           DSVVFIF
Sbjct: 345 DSVVFIF 351

Source: Vigna radiata

Species: Vigna radiata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452712|ref|XP_002282568.1| PREDICTED: V-type proton ATPase subunit d2 [Vitis vinifera] gi|147866282|emb|CAN79922.1| hypothetical protein VITISV_042442 [Vitis vinifera]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/247 (97%), Positives = 246/247 (99%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SE ITSEDLDDMNIEIMRNTLYKAYLEDFY+FCQKLGGAT+EIMSDLLAFEADRRAVNIT
Sbjct: 165 SERITSEDLDDMNIEIMRNTLYKAYLEDFYQFCQKLGGATSEIMSDLLAFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTRDDR+KLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIF+K+SYG
Sbjct: 225 INSIGTELTRDDRKKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFAKMSYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH
Sbjct: 285 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 344

Query: 241 DSVVFIF 247
           DSVVFIF
Sbjct: 345 DSVVFIF 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148907059|gb|ABR16673.1| unknown [Picea sitchensis]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/247 (96%), Positives = 244/247 (98%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SECITSEDLDDMNIEIMRNTLYKAYLEDFY FC+KLGGATAEIMSDLLAFEADRRAVNIT
Sbjct: 165 SECITSEDLDDMNIEIMRNTLYKAYLEDFYNFCKKLGGATAEIMSDLLAFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRG MEKYPPYQSIFSK+SYG
Sbjct: 225 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGAMEKYPPYQSIFSKISYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQMLDK+FYEEEVKR CLAFEQQFHYGVFFAY+RLREQEIRNLMW+SECVAQNQKSRVH
Sbjct: 285 ESQMLDKSFYEEEVKRFCLAFEQQFHYGVFFAYVRLREQEIRNLMWVSECVAQNQKSRVH 344

Query: 241 DSVVFIF 247
           DS+VFIF
Sbjct: 345 DSIVFIF 351

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561094|ref|XP_002521559.1| vacuolar ATP synthase subunit ac39, putative [Ricinus communis] gi|223539237|gb|EEF40830.1| vacuolar ATP synthase subunit ac39, putative [Ricinus communis]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/247 (97%), Positives = 246/247 (99%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SECITSEDLDDMNIEIMRNTLYKAYLEDFY+FCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct: 165 SECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTRDDRRKLYSNFGLL+PYGHEELAVCED+DQVRGVMEKYPPYQSIF+KLSYG
Sbjct: 225 INSIGTELTRDDRRKLYSNFGLLHPYGHEELAVCEDLDQVRGVMEKYPPYQSIFAKLSYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQ+LDKAFYEEEVKRLCLAFEQQFHY VFFAY+RLREQEIRNLMWISECVAQNQKSRVH
Sbjct: 285 ESQLLDKAFYEEEVKRLCLAFEQQFHYAVFFAYIRLREQEIRNLMWISECVAQNQKSRVH 344

Query: 241 DSVVFIF 247
           DSVVFIF
Sbjct: 345 DSVVFIF 351

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501685|ref|XP_003621131.1| V-type proton ATPase subunit d2 [Medicago truncatula] gi|124360985|gb|ABN08957.1| H+-transporting two-sector ATPase, C (AC39) subunit [Medicago truncatula] gi|355496146|gb|AES77349.1| V-type proton ATPase subunit d2 [Medicago truncatula]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/247 (97%), Positives = 243/247 (98%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SECITSEDLDDMNIEIMRNTLYKAYLEDFY+FCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct: 165 SECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTRDDRRKLYSNFGL YPYGHEELAVCEDIDQVR VMEKYPPYQSIF+KLSYG
Sbjct: 225 INSIGTELTRDDRRKLYSNFGLFYPYGHEELAVCEDIDQVRAVMEKYPPYQSIFAKLSYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQMLDKAFYEEEVKR CLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSRVH
Sbjct: 285 ESQMLDKAFYEEEVKRHCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 344

Query: 241 DSVVFIF 247
           DSVVFIF
Sbjct: 345 DSVVFIF 351

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141359|ref|XP_002324040.1| predicted protein [Populus trichocarpa] gi|222867042|gb|EEF04173.1| predicted protein [Populus trichocarpa]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/247 (96%), Positives = 246/247 (99%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SECITS+DLDDMNIEIMRNTLYKAYLEDFY+FCQKLGGATAEIMSDLL+FEADRRAVNIT
Sbjct: 165 SECITSDDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLSFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTR+DRRKLYSNFGLLYPYGHEELAVCED+DQVRGVMEKYPPYQSIF+KLSYG
Sbjct: 225 INSIGTELTREDRRKLYSNFGLLYPYGHEELAVCEDLDQVRGVMEKYPPYQSIFAKLSYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQ+LDKAFYEEEVKRLCLAFEQQFHY VFFAY+RLREQEIRNLMWISECVAQNQKSRVH
Sbjct: 285 ESQLLDKAFYEEEVKRLCLAFEQQFHYAVFFAYIRLREQEIRNLMWISECVAQNQKSRVH 344

Query: 241 DSVVFIF 247
           DSVVFIF
Sbjct: 345 DSVVFIF 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233060|ref|NP_189512.1| V-type proton ATPase subunit d1 [Arabidopsis thaliana] gi|297815166|ref|XP_002875466.1| hypothetical protein ARALYDRAFT_484647 [Arabidopsis lyrata subsp. lyrata] gi|297818484|ref|XP_002877125.1| hypothetical protein ARALYDRAFT_484645 [Arabidopsis lyrata subsp. lyrata] gi|12230764|sp|Q9LJI5.1|VA0D1_ARATH RecName: Full=V-type proton ATPase subunit d1; Short=V-ATPase subunit d1; AltName: Full=Vacuolar H(+)-ATPase subunit d isoform 1; AltName: Full=Vacuolar proton pump subunit d1 gi|9294284|dbj|BAB02186.1| vacuolar ATP synthase subunit AC39 [Arabidopsis thaliana] gi|14532480|gb|AAK63968.1| AT3g28710/MZN14_20 [Arabidopsis thaliana] gi|18655357|gb|AAL76134.1| AT3g28710/MZN14_20 [Arabidopsis thaliana] gi|23297057|gb|AAN13080.1| putative adenosine triphosphatase [Arabidopsis thaliana] gi|297321304|gb|EFH51725.1| hypothetical protein ARALYDRAFT_484647 [Arabidopsis lyrata subsp. lyrata] gi|297322963|gb|EFH53384.1| hypothetical protein ARALYDRAFT_484645 [Arabidopsis lyrata subsp. lyrata] gi|332643959|gb|AEE77480.1| V-type proton ATPase subunit d1 [Arabidopsis thaliana]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/247 (95%), Positives = 246/247 (99%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
           MIDNVVLIVTGTLHERDVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
           SEC+TSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct: 165 SECLTSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 224

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
           INSIGTELTR+DR+KLYSNFGLLYPYGHEELA+CEDIDQVRGVMEKYPPYQ+IFSK+SYG
Sbjct: 225 INSIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYG 284

Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
           ESQMLDKAFYEEEV+RLCLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSR+H
Sbjct: 285 ESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIH 344

Query: 241 DSVVFIF 247
           DSVV++F
Sbjct: 345 DSVVYMF 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2095482	351	AT3G28710 [Arabidopsis thalian	1.0	0.703	0.951	3.3e-127
TAIR|locus:2095492	351	AT3G28715 [Arabidopsis thalian	1.0	0.703	0.947	1.1e-126
DICTYBASE|DDB_G0273657	356	vatD-2 "vacuolar ATPase subuni	0.979	0.679	0.594	2e-79
DICTYBASE|DDB_G0273071	356	vatD-1 "vacuolar ATPase subuni	0.979	0.679	0.594	2e-79
FB|FBgn0028665	350	VhaAC39-1 "Vacuolar H[+] ATPas	0.991	0.7	0.562	8.4e-74
UNIPROTKB|E1BVF8	351	LOC100857345 "Uncharacterized	0.995	0.700	0.536	6.1e-71
UNIPROTKB|Q5ZHL0	351	ATP6V0D2 "V-type proton ATPase	0.983	0.692	0.516	1.3e-70
UNIPROTKB|P61420	351	ATP6V0D1 "V-type proton ATPase	0.995	0.700	0.536	1.6e-70
UNIPROTKB|F5GYQ1	392	ATP6V0D1 "V-type proton ATPase	0.995	0.627	0.536	1.6e-70
UNIPROTKB|F8WEN9	274	ATP6V0D1 "V-type proton ATPase	0.995	0.897	0.536	1.6e-70

TAIR|locus:2095482 AT3G28710 [Arabidopsis thaliana (taxid:3702)]

 Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
 Identities = 235/247 (95%), Positives = 246/247 (99%)

Query:     1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
             MIDNVVLIVTGTLHERDVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct:   105 MIDNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query:    61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
             SEC+TSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct:   165 SECLTSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 224

Query:   121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
             INSIGTELTR+DR+KLYSNFGLLYPYGHEELA+CEDIDQVRGVMEKYPPYQ+IFSK+SYG
Sbjct:   225 INSIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYG 284

Query:   181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
             ESQMLDKAFYEEEV+RLCLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSR+H
Sbjct:   285 ESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIH 344

Query:   241 DSVVFIF 247
             DSVV++F
Sbjct:   345 DSVVYMF 351

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2095492 AT3G28715 [Arabidopsis thaliana (taxid:3702)]

 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 234/247 (94%), Positives = 245/247 (99%)

Query:     1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
             MIDNVVLIVTGTLHERDVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct:   105 MIDNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164

Query:    61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
             SEC+TSEDLDDMNIEIMRNTLYKAYLEDFY FCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct:   165 SECLTSEDLDDMNIEIMRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNIT 224

Query:   121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
             INSIGTELTR+DR+KLYSNFGLLYPYGHEELA+CEDIDQVRGVMEKYPPYQ+IFSK+SYG
Sbjct:   225 INSIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYG 284

Query:   181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
             ESQMLDKAFYEEEV+RLCLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSR+H
Sbjct:   285 ESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIH 344

Query:   241 DSVVFIF 247
             DSVV++F
Sbjct:   345 DSVVYMF 351

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

DICTYBASE|DDB_G0273657 vatD-2 "vacuolar ATPase subunit D" [Dictyostelium discoideum (taxid:44689)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 145/244 (59%), Positives = 192/244 (78%)

Query:     1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
             MIDNVVL++TGTLHERD+ EL++KCHPLG+F S+ATL+V  N+ +LY  VL+DTPLAPY 
Sbjct:   111 MIDNVVLLITGTLHERDISELVDKCHPLGLFKSMATLSVVHNVADLYNNVLIDTPLAPYI 170

Query:    61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
               C++ EDLD+MNIEI+RNTLYKAYLEDFY +C+ LGG T  IMSD+L FEADRR++NIT
Sbjct:   171 QGCLSEEDLDEMNIEIIRNTLYKAYLEDFYNYCKYLGGQTELIMSDILKFEADRRSINIT 230

Query:   121 INSIG-TELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSY 179
             INS G TEL++DDR KLY + GLLYP G  +L   ED+DQVRG++E Y  Y++ FS    
Sbjct:   231 INSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSD-GV 289

Query:   180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
                + L+ +F+E EV    +AFE Q+ YGVF+AY++LREQEIRN++WI+EC++QN K ++
Sbjct:   290 NNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKM 349

Query:   240 HDSV 243
             +  +
Sbjct:   350 NQYI 353

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0273071 vatD-1 "vacuolar ATPase subunit D" [Dictyostelium discoideum (taxid:44689)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 145/244 (59%), Positives = 192/244 (78%)

Query:     1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
             MIDNVVL++TGTLHERD+ EL++KCHPLG+F S+ATL+V  N+ +LY  VL+DTPLAPY 
Sbjct:   111 MIDNVVLLITGTLHERDISELVDKCHPLGLFKSMATLSVVHNVADLYNNVLIDTPLAPYI 170

Query:    61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
               C++ EDLD+MNIEI+RNTLYKAYLEDFY +C+ LGG T  IMSD+L FEADRR++NIT
Sbjct:   171 QGCLSEEDLDEMNIEIIRNTLYKAYLEDFYNYCKYLGGQTELIMSDILKFEADRRSINIT 230

Query:   121 INSIG-TELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSY 179
             INS G TEL++DDR KLY + GLLYP G  +L   ED+DQVRG++E Y  Y++ FS    
Sbjct:   231 INSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSD-GV 289

Query:   180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
                + L+ +F+E EV    +AFE Q+ YGVF+AY++LREQEIRN++WI+EC++QN K ++
Sbjct:   290 NNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKM 349

Query:   240 HDSV 243
             +  +
Sbjct:   350 NQYI 353

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0028665 VhaAC39-1 "Vacuolar H[+] ATPase AC39 subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 140/249 (56%), Positives = 189/249 (75%)

Query:     1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
             MIDN++L++TGTLH+R + EL+ KCHPLG F+ +  + VA    ELY  VLVDTPLAP+F
Sbjct:   104 MIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVASTPAELYNAVLVDTPLAPFF 163

Query:    61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
              +CI+ +DLD+MNIEI+RNTLYKAYLE FY FC+ +GGATA++M ++LAFEADRRA+ IT
Sbjct:   164 VDCISEQDLDEMNIEIIRNTLYKAYLEAFYNFCKNMGGATADVMCEILAFEADRRAIIIT 223

Query:   121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIF--SKLS 178
             INS GTEL++DDR KLY N G +YP G   LA  +D +QV+ V E Y  Y ++F  S  +
Sbjct:   224 INSFGTELSKDDRAKLYPNCGKMYPDGLAALARADDYEQVKTVAEYYAEYAALFDGSGNN 283

Query:   179 YGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSR 238
              G+  + DK F+E EVK    AF QQFH+GVF+AY++L+EQE RN++WI+ECVAQ  +++
Sbjct:   284 PGDKTLEDK-FFEHEVKLDVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAK 342

Query:   239 VHDSVVFIF 247
             + D+ + IF
Sbjct:   343 I-DNYIPIF 350

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS;NAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0015992 "proton transport" evidence=NAS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0007035 "vacuolar acidification" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E1BVF8 LOC100857345 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 133/248 (53%), Positives = 184/248 (74%)

Query:     1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
             MIDNV+L++TGTLH+R + EL+ KCHPLG F+ +  + +AQ   ELY  +LVDTPLA +F
Sbjct:   105 MIDNVILLITGTLHQRSISELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFF 164

Query:    61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
              +CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC+ LGG TA+ M  +L FEADRRA  IT
Sbjct:   165 QDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCKALGGTTADAMCPILEFEADRRAFIIT 224

Query:   121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SY 179
             INS GTEL+++DR KL+ + G LYP G  +LA  +D +QV+ V + YP Y+ +F    S 
Sbjct:   225 INSFGTELSKEDRAKLFPHCGKLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSN 284

Query:   180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
                + L+  F+E EVK   LAF  QFH+GVF+A+++L+EQE RN++WI+EC+AQ  ++++
Sbjct:   285 PGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRTKI 344

Query:   240 HDSVVFIF 247
              D+ + IF
Sbjct:   345 -DNYIPIF 351

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

UNIPROTKB|Q5ZHL0 ATP6V0D2 "V-type proton ATPase subunit d 2" [Gallus gallus (taxid:9031)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 126/244 (51%), Positives = 181/244 (74%)

Query:     1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
             MIDN++L++TGTLH+R + EL+ KCHPLG F+ +  +++A N  EL+  +LVDTPLA +F
Sbjct:   105 MIDNIILLITGTLHQRPIAELVPKCHPLGSFEQMEAVSIASNPTELFNAILVDTPLAAFF 164

Query:    61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
              +C++  DLD+MN+EIMRN LYK+YLE FYKFC+K GG TAEIM  +L FEADRRA  IT
Sbjct:   165 QDCLSENDLDEMNVEIMRNKLYKSYLEAFYKFCEKQGGTTAEIMKPILEFEADRRAFIIT 224

Query:   121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
             INS GTEL+++DR KLY   G LYP G   LA  +D +QV+ V + Y  Y+++F  +   
Sbjct:   225 INSFGTELSKEDREKLYPTCGKLYPEGLHLLANADDYEQVKCVADYYAEYKAVFEGVGND 284

Query:   181 ESQM-LDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
               +  L+ AF+E E+K   LAF  QFH+GVF+AY++L+EQE RN++WI+EC++Q  ++++
Sbjct:   285 SGEKTLEDAFFEHEIKLNVLAFNNQFHFGVFYAYIKLKEQECRNIVWIAECISQRHRTKI 344

Query:   240 HDSV 243
             ++ +
Sbjct:   345 NNYI 348

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

UNIPROTKB|P61420 ATP6V0D1 "V-type proton ATPase subunit d 1" [Bos taurus (taxid:9913)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 133/248 (53%), Positives = 183/248 (73%)

Query:     1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
             MIDNV+L++TGTLH+R + EL+ KCHPLG F+ +  + +AQ   ELY  +LVDTPLA +F
Sbjct:   105 MIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFF 164

Query:    61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
              +CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC  LGG TA+ M  +L FEADRRA  IT
Sbjct:   165 QDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIIT 224

Query:   121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SY 179
             INS GTEL+++DR KL+ + G LYP G  +LA  +D +QV+ V + YP Y+ +F    S 
Sbjct:   225 INSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSN 284

Query:   180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
                + L+  F+E EVK   LAF  QFH+GVF+A+++L+EQE RN++WI+EC+AQ  ++++
Sbjct:   285 PGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI 344

Query:   240 HDSVVFIF 247
              D+ + IF
Sbjct:   345 -DNYIPIF 351

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|F5GYQ1 ATP6V0D1 "V-type proton ATPase subunit d 1" [Homo sapiens (taxid:9606)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 133/248 (53%), Positives = 183/248 (73%)

Query:     1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
             MIDNV+L++TGTLH+R + EL+ KCHPLG F+ +  + +AQ   ELY  +LVDTPLA +F
Sbjct:   146 MIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFF 205

Query:    61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
              +CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC  LGG TA+ M  +L FEADRRA  IT
Sbjct:   206 QDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIIT 265

Query:   121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SY 179
             INS GTEL+++DR KL+ + G LYP G  +LA  +D +QV+ V + YP Y+ +F    S 
Sbjct:   266 INSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSN 325

Query:   180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
                + L+  F+E EVK   LAF  QFH+GVF+A+++L+EQE RN++WI+EC+AQ  ++++
Sbjct:   326 PGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI 385

Query:   240 HDSVVFIF 247
              D+ + IF
Sbjct:   386 -DNYIPIF 392

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

UNIPROTKB|F8WEN9 ATP6V0D1 "V-type proton ATPase subunit d 1" [Homo sapiens (taxid:9606)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 133/248 (53%), Positives = 183/248 (73%)

Query:     1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
             MIDNV+L++TGTLH+R + EL+ KCHPLG F+ +  + +AQ   ELY  +LVDTPLA +F
Sbjct:    28 MIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFF 87

Query:    61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
              +CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC  LGG TA+ M  +L FEADRRA  IT
Sbjct:    88 QDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIIT 147

Query:   121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SY 179
             INS GTEL+++DR KL+ + G LYP G  +LA  +D +QV+ V + YP Y+ +F    S 
Sbjct:   148 INSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSN 207

Query:   180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
                + L+  F+E EVK   LAF  QFH+GVF+A+++L+EQE RN++WI+EC+AQ  ++++
Sbjct:   208 PGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI 267

Query:   240 HDSVVFIF 247
              D+ + IF
Sbjct:   268 -DNYIPIF 274

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043679 "axon terminus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZHL0	VA0D2_CHICK	No assigned EC number	0.5163	0.9838	0.6923	yes	no
Q9LHA4	VA0D2_ARATH	No assigned EC number	0.9473	1.0	0.7037	yes	no
Q9LJI5	VA0D1_ARATH	No assigned EC number	0.9514	1.0	0.7037	yes	no
P51863	VA0D1_MOUSE	No assigned EC number	0.5362	0.9959	0.7008	yes	no
O13753	VA0D_SCHPO	No assigned EC number	0.5271	0.9554	0.6880	yes	no
Q8RU33	VA0D_ORYSJ	No assigned EC number	0.9433	1.0	0.7037	yes	no
P54641	VA0D_DICDI	No assigned EC number	0.6016	0.9676	0.6713	yes	no
Q5R6I1	VA0D1_PONAB	No assigned EC number	0.5362	0.9959	0.7008	yes	no
P61420	VA0D1_BOVIN	No assigned EC number	0.5362	0.9959	0.7008	yes	no
P61421	VA0D1_HUMAN	No assigned EC number	0.5362	0.9959	0.7008	yes	no
Q9W4P5	VA0D1_DROME	No assigned EC number	0.5622	0.9919	0.7	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020891001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_21, whole genome shotgun sequence); (351 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00013522001	SubName- Full=Chromosome undetermined scaffold_495, whole genome shotgun sequence; (285 aa)				•		•			0.910
	GSVIVG00029599001	SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (849 aa)						•			0.899
	GSVIVG00026188001	SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_37, whole genome shot [...] (222 aa)						•			0.899
	GSVIVG00024902001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (232 aa)						•			0.899
	GSVIVG00022618001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (606 aa)						•			0.899
	VPP	SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (764 aa)						•			0.899
	GSVIVG00003295001	SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (767 aa)						•			0.899
	GSVIVG00000475001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (214 aa)						•			0.899
	GSVIVG00018828001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (261 aa)				•	•	•	•		0.776
	GSVIVG00035934001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (822 aa)				•	•	•	•		0.696

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
pfam01992	335	pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) s	1e-65
COG1527	346	COG1527, NtpC, Archaeal/vacuolar-type H+-ATPase su	3e-44
TIGR02923	343	TIGR02923, AhaC, ATP synthase A1, C subunit	5e-04

>gnl|CDD|216834 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subunit

 Score =  206 bits (526), Expect = 1e-65
 Identities = 82/241 (34%), Positives = 129/241 (53%), Gaps = 7/241 (2%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLG-MFDSIATLAVAQNMRELYRLVLVDTPLAPY 59
            I N+  ++ G L  R  +E+LE   PLG +F+ +  LA A+ + E+   VL  TP AP 
Sbjct: 90  DIWNIKTLIRGKLAGRPAEEVLELLIPLGEVFEKMKELADAKTIEEVVN-VLEGTPYAPP 148

Query: 60  FSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNI 119
             + +   + D+ NIEI+ NTLYK Y E+  KF +  GG  A+I+ + LA E DRR + I
Sbjct: 149 LQKAL--SEYDETNIEIIENTLYKRYYEELLKFAKSRGGKEAKILREFLALEIDRRNLKI 206

Query: 120 TINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSY 179
            +   G+ L+ D+ +KLY   G L P G E+LA  +D D+V   +E     +++      
Sbjct: 207 ALRLKGSGLSPDEIKKLYPEGGQLVPEGLEKLARADDYDEVLSELEGTAYGEALSEAAGE 266

Query: 180 GESQM--LDKAFYEEEVKRLC-LAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQK 236
               +  L++A  +  ++R+  LAF      G   +Y++L+EQE+RNL  I+    Q  K
Sbjct: 267 YGGSLKALERALDKVLLERISKLAFVYPLSVGPVLSYIKLKEQEVRNLRAIARGKEQGLK 326

Query: 237 S 237
            
Sbjct: 327 P 327

This family includes the AC39 subunit from vacuolar ATP synthase, and the C subunit from archaebacterial ATP synthase. The family also includes subunit C from the Sodium transporting ATP synthase from Enterococcus hirae. Length = 335

>gnl|CDD|224444 COG1527, NtpC, Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]

 Score =  151 bits (384), Expect = 3e-44
 Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 10/241 (4%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
            I+N+  ++   L   D +E+ +   PLG F+++ TLA A+ M E+   +   T LAP  
Sbjct: 100 DIENIKTLLRAKLAG-DPEEISDLLIPLGDFETLLTLAEAKTMEEVVETLEGTTYLAPLE 158

Query: 61  SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
                 +  D  +IE + N L KAY ED  +      G   E++ + L  E DRR +   
Sbjct: 159 EAL--RDYEDTGDIEPLENALDKAYYEDLLRSVNSEKGD--ELLREFLRLEIDRRNIKTA 214

Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSY- 179
           +    +EL+ +    L  + G L      +LA  EDI  V   +E      ++       
Sbjct: 215 LRGKASELSEELMESLIPDGGSLDASALRDLAEAEDILDVLEALEGTSYGDALSEYREEY 274

Query: 180 --GESQMLDKAFYEEEVKRLCLAFEQQFHYGVF--FAYMRLREQEIRNLMWISECVAQNQ 235
             G S  + +    + + +    F Q +   V    AY+  +E E++NL WI+E  A   
Sbjct: 275 EEGGSIAVFEEALRKALLKRAKEFAQYYPLSVGPVLAYLLRKEIEVKNLRWIAEGKANGL 334

Query: 236 K 236
            
Sbjct: 335 P 335

Length = 346

>gnl|CDD|234061 TIGR02923, AhaC, ATP synthase A1, C subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 46/229 (20%), Positives = 81/229 (35%), Gaps = 15/229 (6%)

Query: 4   NVVLIVTGTLHERDVQELLEKCHPLGMF--DSIATLAVAQNMRELYRLVLVDTPLAPYFS 61
           N+  ++         +E+ +   P G F    I  LA A+ + E+    L  TP      
Sbjct: 101 NIKTLIRAKYANASAEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVE-ALEGTPYYGPLQ 159

Query: 62  ECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITI 121
           E   + + D   IE   N L + Y E   K+         ++ ++ +  E D R +   +
Sbjct: 160 E-ALAGNGDLSPIE---NELDRMYYEKLLKYVGSPSDDETKLFTEFIKTEVDIRNLKTLL 215

Query: 122 NSIGTELTRDDRRKLYSNFGLLYPYGH-EELAVCEDIDQVRGVME--KYPPYQSIFSKLS 178
                 L+ D+        G          LA  E ID+V   ++  KY    S      
Sbjct: 216 RLKAAGLSPDEIMPYTIPGGYELDEEKLAPLAHIESIDEVVSALDGTKYGEDISEVLSEE 275

Query: 179 YGESQMLDKAF---YEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNL 224
                + ++A      +   +  L+       G    Y+  +E+E+RNL
Sbjct: 276 EKSVAVFERALDEYLIKMATK--LSLRYPLSVGPVLGYILKKEREVRNL 322

The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. Length = 343

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
KOG2957	350	consensus Vacuolar H+-ATPase V0 sector, subunit d	100.0
COG1527	346	NtpC Archaeal/vacuolar-type H+-ATPase subunit C [E	100.0
PF01992	337	vATP-synt_AC39: ATP synthase (C/AC39) subunit; Int	100.0
TIGR02923	343	AhaC ATP synthase A1, C subunit. The A1/A0 ATP syn	100.0
PRK01198	352	V-type ATP synthase subunit C; Provisional	99.97
TIGR02923	343	AhaC ATP synthase A1, C subunit. The A1/A0 ATP syn	99.55
PRK01198	352	V-type ATP synthase subunit C; Provisional	99.41
PF01992	337	vATP-synt_AC39: ATP synthase (C/AC39) subunit; Int	98.57
COG1527	346	NtpC Archaeal/vacuolar-type H+-ATPase subunit C [E	98.06
PF10962	271	DUF2764: Protein of unknown function (DUF2764); In	95.13

>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion]

Probab=100.00  E-value=2.2e-109  Score=753.81  Aligned_cols=246  Identities=63%  Similarity=1.073  Sum_probs=241.9

Q ss_pred             CchhHHHHHHhhhcCCChHHHHhhhcCCCCcccchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHH
Q 025862            1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNT   80 (247)
Q Consensus         1 MIdNv~lLi~g~~~~r~~~ell~~chPLG~F~~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~   80 (247)
                      |||||++|||||+|+||+.|+++||||||||++|+||+||+|++|||++||||||+||||.+|++++|||++|||||||+
T Consensus       105 mIdNv~lLitgtl~~r~~~ell~kChpLG~F~~l~ai~vA~n~~ely~~vlvdTpla~~F~dc~~~~dld~mniEIiRn~  184 (350)
T KOG2957|consen  105 MIDNVILLITGTLHDRDVGELLEKCHPLGSFDQLEAIKVASNPAELYNAVLVDTPLAPYFEDCLSEEDLDEMNIEIIRNT  184 (350)
T ss_pred             HHhHHHHHHhccccCCCHHHHHHhcCCcCchhhhhhhhhcCCHHHHHHHHHhcCcchHHHHhhcCHhhhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHH
Q 025862           81 LYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQV  160 (247)
Q Consensus        81 L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v  160 (247)
                      |||+|||+||+||+++||.|+++||+||+||||||+|+||+||||++|++++|++|||+||+|||.|++.||+|+|.|+|
T Consensus       185 lYKaylE~fY~fc~~~g~~tae~M~~iL~fEaDRRai~ItiNs~gteL~~~~R~kL~P~~g~lyp~~~~~La~aed~e~v  264 (350)
T KOG2957|consen  185 LYKAYLEDFYNFCKKLGGATAEVMCEILAFEADRRAIIITINSFGTELSKEDRAKLYPNCGKLYPRGLELLARAEDYEQV  264 (350)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccceeEEEehhhcccccChhHHHHhCCCcCccChhHHHHHHhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCcccHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhccccccc
Q 025862          161 RGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH  240 (247)
Q Consensus       161 ~~~l~~~~~Y~~i~~~~~~~~~~~lEd~f~~~ev~~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~~~~i~  240 (247)
                      |+|++.+++|+.+|+..+.++.++|||+|+++||++|++||.|||||||||||+||||||||||+||||||+||||+|||
T Consensus       265 k~v~~~~~~Y~~~fd~~~~~g~ktLed~f~e~Ev~~~~~aF~qqfh~gvfyay~KlKEQEiRNI~WIAECIaQnqr~ri~  344 (350)
T KOG2957|consen  265 KNVLSTYYEYKALFDKDGGPGSKTLEDVFYEHEVKLNVLAFLQQFHFGVFYAYMKLKEQEIRNIVWIAECIAQNQRDRID  344 (350)
T ss_pred             HHHHHhhhhhHhHhhcCCCCccccHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence            99999999999999877655558999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q 025862          241 DSVVFI  246 (247)
Q Consensus       241 ~~i~~~  246 (247)
                      +||||.
T Consensus       345 ~~ipi~  350 (350)
T KOG2957|consen  345 NYIPIM  350 (350)
T ss_pred             ccccCC
Confidence            999984

>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]

Probab=100.00  E-value=3.8e-44  Score=335.27  Aligned_cols=239  Identities=27%  Similarity=0.370  Sum_probs=217.0

Q ss_pred             CchhHHHHHHhhhcCCChHHHHhhhcCCCCcccchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHH
Q 025862            1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNT   80 (247)
Q Consensus         1 MIdNv~lLi~g~~~~r~~~ell~~chPLG~F~~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~   80 (247)
                      ||+||+.||+||.+| +.+++...|||+|+|+.+++++.|+|++|++..+.+.|+++||+..|.  ...+..|+++|++.
T Consensus       100 di~NIk~li~ak~~g-~~~~~~~~liP~G~~~~~~~l~~a~t~eev~~~~~~~~y~~~~~~~~~--~y~~~~~i~~le~~  176 (346)
T COG1527         100 DIENIKTLLRAKLAG-DPEEISDLLIPLGDFETLLTLAEAKTMEEVVETLEGTTYLAPLEEALR--DYEDTGDIEPLENA  176 (346)
T ss_pred             HHHHHHHHHHHHHhC-CccchHHhcCcCchHHHHHHHHhhcchHHHHHHHhcCchhHHHHHHHH--HHhhcCCHHHHHHH
Confidence            689999999999999 999999999999999999999999999999999999999999876665  22455599999999


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHH
Q 025862           81 LYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQV  160 (247)
Q Consensus        81 L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v  160 (247)
                      |||+|+|+|+++|++..|..  +|.+++++|+|++||+|++|+++.+++.+.+..++|..|.|+++.+..|+.++|+.+|
T Consensus       177 Ldk~Yye~l~~~~~~~~~~~--~~~~~~~~eID~~Ni~~~lr~k~~~~~~e~~~~li~~gg~l~~~~~~~l~~~ed~~~~  254 (346)
T COG1527         177 LDKAYYEDLLRSVNSEKGDE--LLREFLRLEIDRRNIKTALRGKASELSEELMESLIPDGGSLDASALRDLAEAEDILDV  254 (346)
T ss_pred             HHHHHHHHHHHhcccccchH--HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhcCCCccCCHHHHHHHHhcccHHHH
Confidence            99999999999999888853  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCcccHHhhhhc----CCCCCCcHHHHHHHHHHHHHHHHhhhhcchH--HHHHHHHHHHHHhhhHHHHHHHhhhc
Q 025862          161 RGVMEKYPPYQSIFSKL----SYGESQMLDKAFYEEEVKRLCLAFEQQFHYG--VFFAYMRLREQEIRNLMWISECVAQN  234 (247)
Q Consensus       161 ~~~l~~~~~Y~~i~~~~----~~~~~~~lEd~f~~~ev~~~~~af~qqf~~g--~fyaylklKEqEIRNi~WIaecI~q~  234 (247)
                      .+++++++ |.+++...    ..|+..++++++...++..+..+|.+++.+|  |+++|++.|||||+||.|||+|++|+
T Consensus       255 ~~~l~~t~-yg~~l~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~a~~~p~s~~~v~~yl~~KE~EV~NLr~Ia~~k~~~  333 (346)
T COG1527         255 LEALEGTS-YGDALSEYREEYEEGGSIAVFEEALRKALLKRAKEFAQYYPLSVGPVLAYLLRKEIEVKNLRWIAEGKANG  333 (346)
T ss_pred             HHHcccCc-hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999998 88777443    2344468888888888888877788777777  99999999999999999999999999


Q ss_pred             c-cccccccccc
Q 025862          235 Q-KSRVHDSVVF  245 (247)
Q Consensus       235 ~-~~~i~~~i~~  245 (247)
                      + +++|.+.+++
T Consensus       334 ~~~e~i~~~~~~  345 (346)
T COG1527         334 LPREEIKELLVP  345 (346)
T ss_pred             CCHHHHHHHhcc
Confidence            9 9999887764

>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=5.9e-37  Score=279.30  Aligned_cols=239  Identities=27%  Similarity=0.405  Sum_probs=184.4

Q ss_pred             chhHHHHHHhhhcCCChHHHHhhhcCCC-CcccchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHH
Q 025862            2 IDNVVLIVTGTLHERDVQELLEKCHPLG-MFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNT   80 (247)
Q Consensus         2 IdNv~lLi~g~~~~r~~~ell~~chPLG-~F~~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~   80 (247)
                      |+|++.+|+|+.+|++.+++...+||+| .++.+..|..++|++|+. .+|.+||+++++.++.+  ++++.++..+..+
T Consensus        92 i~nik~ilr~~~~g~~~~~~~~~l~~~g~~~~~l~~l~~~~~~~e~~-~~L~~t~y~~~l~~~~~--~~~~~~~~~~~~~  168 (337)
T PF01992_consen   92 IHNIKTILRAKLSGRDLEEILELLIPLGFSFEDLKELLSAKDVEELI-EALKGTPYYEVLRQALE--DYEQQDFFYIEEA  168 (337)
T ss_dssp             HHHHHHHHHHHHHT--GGGS---S-SS-HHHHHHHHSSSHHHHHHHH--HTTT-THHHHHHHHHH--H-----HHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHhccccCCChhhHHHHhccCCHHHHH-HHhcCcchHHHHHHHHH--hhcccchHHHHHH
Confidence            7999999999999999999999999999 444799999999999999 55599999999999987  5888999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHH
Q 025862           81 LYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQV  160 (247)
Q Consensus        81 L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v  160 (247)
                      |++.|+++.++.+.+.+|.+++++.+++++++|..||.++++++..++++++...++|.+|.+.++.++.|++++|.+++
T Consensus       169 l~~~yy~~~~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~~~R~k~~~~~~~~i~~ll~~~g~l~~~~l~~l~~~~~~~~~  248 (337)
T PF01992_consen  169 LDDRYYEDLLKAAKKLSGSEREILRELLGMEIDLTNIKTILRAKKYGLSPEEIKQLLPPGGRLSKDRLKALAEAEDVEEF  248 (337)
T ss_dssp             HHHHHHHHHHHHHH---TSS-HHHHHHHHHHHHHHHHHHHHHTTTS---GGGT-----SS-SS--H-HHHHHHHTT-GGG
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccCCCCCeeCHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCcccHHhhhhcCCC----CCCcHHHHHHHHHHH-HHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhcc
Q 025862          161 RGVMEKYPPYQSIFSKLSYG----ESQMLDKAFYEEEVK-RLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQ  235 (247)
Q Consensus       161 ~~~l~~~~~Y~~i~~~~~~~----~~~~lEd~f~~~ev~-~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~  235 (247)
                      ...+++++ |...+......    +...+|+++..+.++ ..+.++..||++||++||+.+||+||+||+||++|+.++.
T Consensus       249 ~~~l~~t~-y~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ke~Ei~nL~~I~~g~~~gl  327 (337)
T PF01992_consen  249 LEALSGTP-YGKLLSDAEEEYEETSLSELERALDRYLLKKALRLSRRSPFSIGPILAYLILKEIEIRNLRTIIEGKRYGL  327 (337)
T ss_dssp             GGS-TTST-TGGGTT--S-------HHHHHHHHHHHHHH-HHHGGTT-SSSTHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHhcCc-hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999 77777554311    235899999999999 5599999999999999999999999999999999999988


Q ss_pred             c-cccccccc
Q 025862          236 K-SRVHDSVV  244 (247)
Q Consensus       236 ~-~~i~~~i~  244 (247)
                      . ++|.++++
T Consensus       328 ~~e~I~~~lv  337 (337)
T PF01992_consen  328 SPEEIRERLV  337 (337)
T ss_dssp             -CHHHHHHC-
T ss_pred             CHHHHHhhcC
Confidence            7 77776653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.

>TIGR02923 AhaC ATP synthase A1, C subunit

Probab=100.00  E-value=5.5e-34  Score=261.15  Aligned_cols=229  Identities=20%  Similarity=0.275  Sum_probs=210.0

Q ss_pred             CchhHHHHHHhhhcCCChHHHHhhhcCCCCccc--chhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHH
Q 025862            1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMR   78 (247)
Q Consensus         1 MIdNv~lLi~g~~~~r~~~ell~~chPLG~F~~--l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiir   78 (247)
                      +|+||+.+++|+.+|++.+++.+.++|.|.|+.  +.++..++|++|+.+ +|.+||+++++.+++ +   +..++..++
T Consensus        98 di~Nik~ilR~~~~g~~~~~i~~~l~~~g~~~~~~l~~l~~~~~~~e~~~-~L~~t~y~~~l~~~~-~---~~~~l~~~E  172 (343)
T TIGR02923        98 DVWNIKTLIRAKYANASAEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVE-ALEGTPYYGPLQEAL-A---GNGDLSPIE  172 (343)
T ss_pred             hHHHHHHHHHHHHcCCCHHHHHHHhccccccCHHHHHHHHcCCCHHHHHH-HcCCCccHHHHHHHH-h---cCCCHHHHH
Confidence            479999999999999999999999999999994  899999999999999 559999999999988 2   234889999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCC-CCChhhHHhhccCCCh
Q 025862           79 NTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFG-LLYPYGHEELAVCEDI  157 (247)
Q Consensus        79 n~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G-~L~p~~~~~La~a~d~  157 (247)
                      +.|+++|++++++.|+..++.+..++..+++.|.|..+|+++++++..++++++..++++.+| .+.++.+..|++|+|.
T Consensus       173 ~~Ld~~y~~~l~~~~~~~~~~~~~~l~~~~~~eiD~~Nl~~ilr~k~~~~~~e~i~~~li~~g~~l~~~~l~~l~~~~~~  252 (343)
T TIGR02923       173 NELDRMYYEKLLKYVGSPSDDETKLFTEFIKTEVDIRNLKTLLRLKAAGLSPDEIMPYTIPGGYELDEEKLAPLAHIESI  252 (343)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhccCcccccCHHHHHHHHcCCCH
Confidence            999999999999999877777788999999999999999999999988999999999999999 6799999999999999


Q ss_pred             HHHHHHhhcCcccHHhhhhc---CCCCCCcHHHHHHHHHHHHHH-HHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhh
Q 025862          158 DQVRGVMEKYPPYQSIFSKL---SYGESQMLDKAFYEEEVKRLC-LAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQ  233 (247)
Q Consensus       158 e~v~~~l~~~~~Y~~i~~~~---~~~~~~~lEd~f~~~ev~~~~-~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q  233 (247)
                      +++.+.+.+++ |++.+.++   .+++...+|.+++.+..+.++ .+...||++||++||+.+||+||+||.||++|+.-
T Consensus       253 ~~~~~~l~~t~-y~~~l~~~~~~~~~~~~~~E~~~d~~~~~~~~~~~~~~~~~~~~~~~yl~~ke~Ei~nlr~I~~gk~~  331 (343)
T TIGR02923       253 DEVVSALDGTK-YGEDISEVLSEEEKSVAVFERALDEYLIKMATKLSLRYPLSVGPVLGYILKKEREVRNLRAIARGKEE  331 (343)
T ss_pred             HHHHHHHhcCc-chHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999988 99999753   245557999999999999995 59999999999999999999999999999999987


Q ss_pred             cc
Q 025862          234 NQ  235 (247)
Q Consensus       234 ~~  235 (247)
                      +-
T Consensus       332 ~l  333 (343)
T TIGR02923       332 GL  333 (343)
T ss_pred             CC
Confidence            64

The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.

>PRK01198 V-type ATP synthase subunit C; Provisional

Probab=99.97  E-value=7.6e-31  Score=240.81  Aligned_cols=229  Identities=20%  Similarity=0.295  Sum_probs=209.8

Q ss_pred             CchhHHHHHHhhhcCCChHHHHhhhcCCCCcc--cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCcccccc-ccHHHH
Q 025862            1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDD-MNIEIM   77 (247)
Q Consensus         1 MIdNv~lLi~g~~~~r~~~ell~~chPLG~F~--~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde-~nieii   77 (247)
                      +|+||+.+++|+.+|++.+++.+.++|.|.|+  .+..+..++|++|+.+. |.+|||++++.++...  +.+ .++..+
T Consensus       104 di~NIk~ilr~~~~g~~~~~i~~~l~~~g~l~~~~l~~l~~~~~~~e~~~~-L~~T~Y~~~l~~~~~~--~~~~~~~~~~  180 (352)
T PRK01198        104 DIHNIKTLLRGKILGLDAEEIEELLIPAGELDLEKLKELLEAKSVEEIVKI-LEGTEYYEVLEEALED--YEETGDLQPI  180 (352)
T ss_pred             hHHHHHHHHHHHHhCCChHHhhhheeeCCcCCHHHHHHHHhCCCHHHHHHH-hcCCchHHHHHHHHHH--HhccCCHHHH
Confidence            48999999999999999999999999999998  89999999999999995 5999999999998865  544 499999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCCh
Q 025862           78 RNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDI  157 (247)
Q Consensus        78 rn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~  157 (247)
                      +..|+++|++++++.+ +.++.+.+.+.+++..+.|..+|+++++++..+++++...++++..|++.++.++.|+ ++|+
T Consensus       181 E~~Ld~~~~~~l~~~~-~~~~~~~~~l~~~~~~~iD~~Ni~~ilr~k~~~~~~e~i~~~li~~g~i~~~~l~~l~-~~~~  258 (352)
T PRK01198        181 ENALDKYYYENLLEIA-SPKDIDEKLLLEYVRTEIDITNIKTLLRLKAQGLSADFIEKVLIPGGSLDEEKLKELL-AEDI  258 (352)
T ss_pred             HHHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHccCCCCcCHHHHHHHh-cCCH
Confidence            9999999999999999 5566678899999999999999999999999899999999999999999999999999 9999


Q ss_pred             HHHHHHhhcCcccHHhhhhc-----CCCCCCcHHHHHHHHHHHHHH-HHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHh
Q 025862          158 DQVRGVMEKYPPYQSIFSKL-----SYGESQMLDKAFYEEEVKRLC-LAFEQQFHYGVFFAYMRLREQEIRNLMWISECV  231 (247)
Q Consensus       158 e~v~~~l~~~~~Y~~i~~~~-----~~~~~~~lEd~f~~~ev~~~~-~af~qqf~~g~fyaylklKEqEIRNi~WIaecI  231 (247)
                      +++.+.|++++ |+..+.++     .+++...+|.+++....+.+. .+...+|+++++++|+.+||+|++||.||++|+
T Consensus       259 ~~~~~~L~~t~-y~~~l~~~~~~~~~~~~~~~~E~~~d~~~~~~~~~~~~~~~~~~~~~l~yl~~~e~Ei~NL~~I~~gk  337 (352)
T PRK01198        259 EELVSALEGTK-YGDVLSEALEEYEETGSLSVFEKALDNYLLEYMKKLSKRYPFSVEPILGYILAKEREVKNLRIIARGK  337 (352)
T ss_pred             HHHHHHHhcCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999997 99988654     234556999999999999996 678899999999999999999999999999999


Q ss_pred             hhcc
Q 025862          232 AQNQ  235 (247)
Q Consensus       232 ~q~~  235 (247)
                      .++.
T Consensus       338 ~~~~  341 (352)
T PRK01198        338 ENGL  341 (352)
T ss_pred             HcCC
Confidence            8875

>TIGR02923 AhaC ATP synthase A1, C subunit

Probab=99.55  E-value=3e-13  Score=124.20  Aligned_cols=204  Identities=15%  Similarity=0.174  Sum_probs=152.6

Q ss_pred             cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHH
Q 025862           33 SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA  112 (247)
Q Consensus        33 ~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEA  112 (247)
                      ++..|..++|++|+.+.+ -+|+|++++.+....    ..+...++..|++.+...|.+......|...+++..++. +.
T Consensus        24 ~~~~L~~~~s~~e~~~~L-~~t~Y~~~l~~~~~~----~~~~~~iE~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~   97 (343)
T TIGR02923        24 DFNELLEMRGTDEIVRFL-EETDYKKELDELGSK----SYGVDLIEHALDANLAKTYEKLFRISPGASRDLIRLYLK-KW   97 (343)
T ss_pred             HHHHHHhCCCHHHHHHHh-cCCChHHHHHHhhhc----cCCHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH-HH
Confidence            577888899999999977 889999998775421    235666788888885555444434445655677877666 89


Q ss_pred             HHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHHHHHhhcCcccHHhhhhc--CCCCCCcHHHHHH
Q 025862          113 DRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL--SYGESQMLDKAFY  190 (247)
Q Consensus       113 Drr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v~~~l~~~~~Y~~i~~~~--~~~~~~~lEd~f~  190 (247)
                      |..+|+..++++-.+.++++..+++...|.+.++.++.|++++|++++..+|.+++ |++.+...  .+++...+|.+++
T Consensus        98 di~Nik~ilR~~~~g~~~~~i~~~l~~~g~~~~~~l~~l~~~~~~~e~~~~L~~t~-y~~~l~~~~~~~~~l~~~E~~Ld  176 (343)
T TIGR02923        98 DVWNIKTLIRAKYANASAEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVEALEGTP-YYGPLQEALAGNGDLSPIENELD  176 (343)
T ss_pred             hHHHHHHHHHHHHcCCCHHHHHHHhccccccCHHHHHHHHcCCCHHHHHHHcCCCc-cHHHHHHHHhcCCCHHHHHHHHH
Confidence            99999999999987888888777666679999999999999999999999999999 88888554  3444446666666


Q ss_pred             HHHHHHH-HHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhcc-cccccccc
Q 025862          191 EEEVKRL-CLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQ-KSRVHDSV  243 (247)
Q Consensus       191 ~~ev~~~-~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~-~~~i~~~i  243 (247)
                      ..=.+.. +.+=.-.+.-+++.+++-.+|.|++||.||.+|+.++. ++.|.+++
T Consensus       177 ~~y~~~l~~~~~~~~~~~~~~l~~~~~~eiD~~Nl~~ilr~k~~~~~~e~i~~~l  231 (343)
T TIGR02923       177 RMYYEKLLKYVGSPSDDETKLFTEFIKTEVDIRNLKTLLRLKAAGLSPDEIMPYT  231 (343)
T ss_pred             HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhc
Confidence            5333322 22211224456789999999999999999999999864 35665553

The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.

>PRK01198 V-type ATP synthase subunit C; Provisional

Probab=99.41  E-value=1.5e-11  Score=113.23  Aligned_cols=201  Identities=15%  Similarity=0.204  Sum_probs=150.3

Q ss_pred             cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHH
Q 025862           33 SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA  112 (247)
Q Consensus        33 ~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEA  112 (247)
                      ++..|..++|++|+.+.+ -+|+|++++.+.-+.  .+  +...++..|.+.+...|.......+|.-.+++ +.+....
T Consensus        30 ~~~~L~~~~s~~e~~~~L-~~t~Y~~~l~~~~~~--~~--~~~~~E~~L~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~  103 (352)
T PRK01198         30 KYERLLEMKSLEEIIRFL-EETEYKEEIDELGSR--YS--GPDLIEKALNRNLAKTYELLLEISPGRLKELV-DVYLRKW  103 (352)
T ss_pred             HHHHHHhCCCHHHHHHHH-hcCCcHHHHHHhccc--cc--chhHHHHHHHHHHHHHHHHHHHHCcchHHHHH-HHHHHHH
Confidence            577788899999999998 699999999763322  11  33447788888866666655554555434444 4445669


Q ss_pred             HHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHHHHHhhcCcccHHhhhhc-----CCCCCCcHHH
Q 025862          113 DRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-----SYGESQMLDK  187 (247)
Q Consensus       113 Drr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v~~~l~~~~~Y~~i~~~~-----~~~~~~~lEd  187 (247)
                      |..+|+.+++++-.+.++++-..++...|.+.++..+.|++++|++++...|.+++ |++.+...     .+++...+|.
T Consensus       104 di~NIk~ilr~~~~g~~~~~i~~~l~~~g~l~~~~l~~l~~~~~~~e~~~~L~~T~-Y~~~l~~~~~~~~~~~~~~~~E~  182 (352)
T PRK01198        104 DIHNIKTLLRGKILGLDAEEIEELLIPAGELDLEKLKELLEAKSVEEIVKILEGTE-YYEVLEEALEDYEETGDLQPIEN  182 (352)
T ss_pred             hHHHHHHHHHHHHhCCChHHhhhheeeCCcCCHHHHHHHHhCCCHHHHHHHhcCCc-hHHHHHHHHHHHhccCCHHHHHH
Confidence            99999999999977777776565555579999999999999999999999999988 98887544     2334357777


Q ss_pred             HHHHHHHHHH-HHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhcc-cccccc
Q 025862          188 AFYEEEVKRL-CLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQ-KSRVHD  241 (247)
Q Consensus       188 ~f~~~ev~~~-~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~-~~~i~~  241 (247)
                      +++..-.+.. +.+-.....-.++..|+. ++.|++||+||-+|+.++. ++.|.+
T Consensus       183 ~Ld~~~~~~l~~~~~~~~~~~~~l~~~~~-~~iD~~Ni~~ilr~k~~~~~~e~i~~  237 (352)
T PRK01198        183 ALDKYYYENLLEIASPKDIDEKLLLEYVR-TEIDITNIKTLLRLKAQGLSADFIEK  237 (352)
T ss_pred             HHHHHHHHHHHHHhccCCcchHHHHHHHH-HHhhHHHHHHHHHHHHcCCCHHHHHH
Confidence            7776663333 444223577789999999 9999999999999999865 445543

>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.57  E-value=1.5e-07  Score=86.03  Aligned_cols=200  Identities=15%  Similarity=0.226  Sum_probs=120.3

Q ss_pred             cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHH
Q 025862           33 SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA  112 (247)
Q Consensus        33 ~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEA  112 (247)
                      +..+|..+++++|+ ...|-+|.|++++.+.- .   . .+..-++..|.+.+.+.|.+.....+|+...++.- +-..-
T Consensus        18 ~~~~L~~~~~~~~~-~~~l~~t~Y~~~l~~~~-~---~-~~~~~iE~~L~~~l~~~~~~l~~~~~~~~~~~~~~-~~~r~   90 (337)
T PF01992_consen   18 DYEELLEAESVEEA-VSLLEDTGYGDYLEEVS-S---E-IHRRDIEQALRRELFKEFQKLLRFAPGEAKEFLDA-YLMRY   90 (337)
T ss_dssp             HHHHHTTS-HHHHH-HHHHTS-GGGGG--SSS-H---H-----HHHHHHHHHHHHHTTTGGGG--HHHHHHHHH-HHHHH
T ss_pred             HHHHHHcCCCHHHH-HHHHhcccHHHHHHhcc-c---c-ccHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH-HHHHH
Confidence            57788889999887 55669999999885432 1   1 46677789999999999888888888876677764 45667


Q ss_pred             HHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHHHHHhhcCcccHHhhhhcC--CC--CC----Cc
Q 025862          113 DRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLS--YG--ES----QM  184 (247)
Q Consensus       113 Drr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v~~~l~~~~~Y~~i~~~~~--~~--~~----~~  184 (247)
                      |..+|+..+.++-++-+.++........| ..+..+..|+++.|++++..+|++++ |.+.+....  .+  +.    .+
T Consensus        91 ei~nik~ilr~~~~g~~~~~~~~~l~~~g-~~~~~l~~l~~~~~~~e~~~~L~~t~-y~~~l~~~~~~~~~~~~~~~~~~  168 (337)
T PF01992_consen   91 EIHNIKTILRAKLSGRDLEEILELLIPLG-FSFEDLKELLSAKDVEELIEALKGTP-YYEVLRQALEDYEQQDFFYIEEA  168 (337)
T ss_dssp             HHHHHHHHHHHHHHT--GGGS---S-SS--HHHHHHHHSSSHHHHHHHH-HTTT-T-HHHHHHHHHHH-----HHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHhccccC-CChhhHHHHhccCCHHHHHHHhcCcc-hHHHHHHHHHhhcccchHHHHHH
Confidence            99999999999855545554444333477 66777999999999999999999998 888884431  11  10    13


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhc-cccccccccc
Q 025862          185 LDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQN-QKSRVHDSVV  244 (247)
Q Consensus       185 lEd~f~~~ev~~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~-~~~~i~~~i~  244 (247)
                      +++..|..-.+.+.  ..+--.-..+=.|++ -+-.+.||.|+.+++.++ .++.|..++|
T Consensus       169 l~~~yy~~~~~~~~--~~~~~~~~~l~~~~~-~~iD~~Ni~~~~R~k~~~~~~~~i~~ll~  226 (337)
T PF01992_consen  169 LDDRYYEDLLKAAK--KLSGSEREILRELLG-MEIDLTNIKTILRAKKYGLSPEEIKQLLP  226 (337)
T ss_dssp             HHHHHHHHHHHHHH-----TSS-HHHHHHHH-HHHHHHHHHHHHHTTTS---GGGT-----
T ss_pred             HHHHHHHHHHHHhh--ccccchHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCHhhhhccCC
Confidence            44444444444333  111122233334554 678999999999998765 4556665554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.

>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]

Probab=98.06  E-value=4.7e-05  Score=72.21  Aligned_cols=133  Identities=18%  Similarity=0.227  Sum_probs=116.1

Q ss_pred             hhHHHHHHhhhcCCChHHHHhhhcCCCCcc--cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccc-cHHHHHH
Q 025862            3 DNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDM-NIEIMRN   79 (247)
Q Consensus         3 dNv~lLi~g~~~~r~~~ell~~chPLG~F~--~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~-nieiirn   79 (247)
                      .|+..+++|+..+.+.+.......|-|.++  .+..|.-++|+.++.+.+ .+|+|++.+......  +++. .+..-..
T Consensus       209 ~Ni~~~lr~k~~~~~~e~~~~li~~gg~l~~~~~~~l~~~ed~~~~~~~l-~~t~yg~~l~~~~~~--~~~~~~~~~~e~  285 (346)
T COG1527         209 RNIKTALRGKASELSEELMESLIPDGGSLDASALRDLAEAEDILDVLEAL-EGTSYGDALSEYREE--YEEGGSIAVFEE  285 (346)
T ss_pred             HHHHHHHHHhhcCCcHHHHHHhcCCCccCCHHHHHHHHhcccHHHHHHHc-ccCchHHHHHHHHHH--hhcCCchhHHHH
Confidence            599999999999999888888999999999  799999999999999999 999999999988876  7777 5566666


Q ss_pred             HHHHHHHHHHHHHHHh-cCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccC
Q 025862           80 TLYKAYLEDFYKFCQK-LGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSN  139 (247)
Q Consensus        80 ~L~K~yLEdfy~fc~~-lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~  139 (247)
                      .|.|++++..-+|.+. +=|. .-|+.-++.-|.-++++..+.+++..++++|.+.++++.
T Consensus       286 ~l~~~~~~~~~~~a~~~p~s~-~~v~~yl~~KE~EV~NLr~Ia~~k~~~~~~e~i~~~~~~  345 (346)
T COG1527         286 ALRKALLKRAKEFAQYYPLSV-GPVLAYLLRKEIEVKNLRWIAEGKANGLPREEIKELLVP  345 (346)
T ss_pred             HHHHHHHHHHHHHhhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence            6999999999999875 3332 458999999999999999999999999999988887753

>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function

Probab=95.13  E-value=0.14  Score=47.43  Aligned_cols=162  Identities=15%  Similarity=0.267  Sum_probs=96.5

Q ss_pred             cCCCCcccchhhhhcCCHHHHHHHHHh----cCCCchhhhhccCcccc--ccc-cHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025862           26 HPLGMFDSIATLAVAQNMRELYRLVLV----DTPLAPYFSECITSEDL--DDM-NIEIMRNTLYKAYLEDFYKFCQKLGG   98 (247)
Q Consensus        26 hPLG~F~~l~~l~va~~~~eLy~~vLv----dTPla~yf~~~l~~~dl--de~-nieiirn~L~K~yLEdfy~fc~~lg~   98 (247)
                      +|.|.|+.       ..++++..++-.    +.-+..||.+++.+  +  .+. +--...+.|..    .||+++++-+.
T Consensus        68 ~~~g~~~~-------~el~~~~~~~~~~~~~~~~lP~y~~~Fl~~--y~~~~~e~~~~~e~~L~~----~yy~~~~~~~n  134 (271)
T PF10962_consen   68 DPRGNYSE-------EELEELIKAQKEGDEPDKGLPSYLKDFLED--YLNEEAEERIRHEDRLVA----AYYAYAMKSSN  134 (271)
T ss_pred             CcccCcCH-------HHHHHHHHHHHhcccccccccHHHHHHHHH--HcccchhhccchHHHHHH----HHHHHHHHccC
Confidence            57777661       233444444432    55788899888865  4  111 22234466654    56777777544


Q ss_pred             chHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccC--CChHHHHHHhhcCcccHHhhhh
Q 025862           99 ATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVC--EDIDQVRGVMEKYPPYQSIFSK  176 (247)
Q Consensus        99 ~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a--~d~e~v~~~l~~~~~Y~~i~~~  176 (247)
                         ..++++..|+-|-|+|-..+|+-.-+.++..   ..  .|  .|+....|++.  .|++ +..   .+|-..++...
T Consensus       135 ---~Fl~~~~~F~~~lRnilaAlr~R~~g~d~~~---~l--~g--~~~v~~~Lr~s~a~dFg-L~~---~~p~l~~~~~~  200 (271)
T PF10962_consen  135 ---PFLREWFEFNLELRNILAALRARKLGFDVSK---EL--VG--DGEVAEALRQSNAPDFG-LPE---EFPYLPELIRI  200 (271)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc---cc--cC--cHHHHHHHHhcCCCCCC-CCc---cchhHHHHHHH
Confidence               4999999999999999999999754433322   11  33  45556666632  2221 000   11211112211


Q ss_pred             cCCCCCCcHHHHHHHHHHHHH-HHHhhhhcchHHHHHHH
Q 025862          177 LSYGESQMLDKAFYEEEVKRL-CLAFEQQFHYGVFFAYM  214 (247)
Q Consensus       177 ~~~~~~~~lEd~f~~~ev~~~-~~af~qqf~~g~fyayl  214 (247)
                      ...++-.-.|..++...-+.. ..++...|++--+++|+
T Consensus       201 ~~~~~l~~~E~~Ld~~rW~~Le~~~~~~~Fd~e~V~aY~  239 (271)
T PF10962_consen  201 YEEEPLVERERLLDLLRWNWLEELSFGHYFDFEAVFAYL  239 (271)
T ss_pred             HccCCHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence            111121234888888888888 89999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
1v9m_A	323	V-type ATP synthase subunit C; VOV1-ATPase, V-type	5e-32

>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M* Length = 323

 Score =  118 bits (297), Expect = 5e-32
 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 17/235 (7%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVD-TPLAPY 59
            + N+  ++      R  +E+L     L   +       AQ+   + +++ V   PLA  
Sbjct: 92  DLHNLQALLRAKATGRPFEEVLLLPGTL-REEVWRQAYEAQDPAGMAQVLAVPGHPLARA 150

Query: 60  FSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNI 119
               +     +  ++  +   L K + ED  K  + L       + D LA E D   +  
Sbjct: 151 LRAVL----RETQDLARVEALLAKRFFEDVAKAAKGL---DQPALRDYLALEVDAENLRT 203

Query: 120 TINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSY 179
                G+ L        +   G           +  D   +  +     P+  +      
Sbjct: 204 AFKLQGSGL---APDAFFLKGGRFVDRVRFARLMEGDYAVLDEL--SGTPFSGLSGVRDL 258

Query: 180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQN 234
                L++      +K      +     G+  AY++ RE E   L  ++      
Sbjct: 259 KA---LERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFG 310

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
1v9m_A	323	V-type ATP synthase subunit C; VOV1-ATPase, V-type	100.0
1v9m_A	323	V-type ATP synthase subunit C; VOV1-ATPase, V-type	99.01

>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*

Probab=100.00  E-value=8.1e-45  Score=328.41  Aligned_cols=224  Identities=17%  Similarity=0.195  Sum_probs=195.0

Q ss_pred             CchhHHHHHHhhhcCCChHHHHhhhcCCCCccc--chhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHH
Q 025862            1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMR   78 (247)
Q Consensus         1 MIdNv~lLi~g~~~~r~~~ell~~chPLG~F~~--l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiir   78 (247)
                      ||+||+.+|+|+.+|++.+++.  ||| |.|+.  |+++..|+|++|++. +|.+||+++++..+...  +.+.|++.++
T Consensus        92 di~Nik~ilr~~~~~~~~~~l~--~~~-g~~~~~~l~~l~~a~~~~el~~-~L~~t~y~~~l~~~~~~--~~~~~~~~~e  165 (323)
T 1v9m_A           92 DLHNLQALLRAKATGRPFEEVL--LLP-GTLREEVWRQAYEAQDPAGMAQ-VLAVPGHPLARALRAVL--RETQDLARVE  165 (323)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGCC--CCS-CSSCHHHHHHHHHSSSHHHHHH-HHHTTTCHHHHHHHHHH--TTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCccccc--cCC-CCCCHHHHHHHHhCCCHHHHHH-HHhccccchHHHHHHHH--HHcCCcHHHH
Confidence            6899999999999999999988  999 99995  999999999999995 67999988887766543  5555999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCC-CChhhHHhhccCCCh
Q 025862           79 NTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGL-LYPYGHEELAVCEDI  157 (247)
Q Consensus        79 n~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~-L~p~~~~~La~a~d~  157 (247)
                      +.|+|+|+++++++|+++||   ++|++++++++|+++|++++|+++.+++  .+. ++|.+|. |+|+++..|+++++ 
T Consensus       166 ~~Ldk~y~~~~~~~~~~~~~---~~l~~~~~~~iD~~Ni~~~lr~~~~~~~--i~~-~li~~G~~l~~~~l~~l~~~~~-  238 (323)
T 1v9m_A          166 ALLAKRFFEDVAKAAKGLDQ---PALRDYLALEVDAENLRTAFKLQGSGLA--PDA-FFLKGGRFVDRVRFARLMEGDY-  238 (323)
T ss_dssp             HHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHTTTSCCC--GGG-TCCSSCSSCCHHHHHHHHTTCG-
T ss_pred             HHHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHH-hccCCCCccCHHHHHHHHhCcH-
Confidence            99999999999999999887   6999999999999999999999998886  444 8888997 99999999999999 


Q ss_pred             HHHHHHhhcCcccHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhcc-c
Q 025862          158 DQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQ-K  236 (247)
Q Consensus       158 e~v~~~l~~~~~Y~~i~~~~~~~~~~~lEd~f~~~ev~~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~-~  236 (247)
                       ++.+++++++ |+..+...   +...+|++++.+.+++++.++.+||++||++||+++||||||||+||+|||+|+- +
T Consensus       239 -~~~~~l~~t~-Y~~~~~~~---~~~~~E~~~~~~~~~~~~~~~~~~f~~~~~~ayl~~kE~Ei~nl~~I~~~~~~~l~~  313 (323)
T 1v9m_A          239 -AVLDELSGTP-FSGLSGVR---DLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPR  313 (323)
T ss_dssp             -GGGGSCTTST-TGGGTTCC---SHHHHHHHHHHHHHHHHGGGGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred             -HHHHHHcCCC-HHHHhccC---CHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence             9999999977 99988654   3358999999999999977999999999999999999999999999999999984 3


Q ss_pred             cccccc
Q 025862          237 SRVHDS  242 (247)
Q Consensus       237 ~~i~~~  242 (247)
                      +.|.++
T Consensus       314 e~i~~~  319 (323)
T 1v9m_A          314 AQVEEE  319 (323)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*

Probab=99.01  E-value=3.9e-09  Score=94.82  Aligned_cols=188  Identities=11%  Similarity=0.040  Sum_probs=132.8

Q ss_pred             cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHH
Q 025862           33 SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA  112 (247)
Q Consensus        33 ~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEA  112 (247)
                      ++..|.- +|++|+.+.+ -+|+|++++.+.      +   ..-++..|.+.+...|-......+|+.++ +-+++...-
T Consensus        24 ~~~~L~~-~sl~e~~~~L-~~t~Y~~~l~~~------~---~~~iE~~L~~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~   91 (323)
T 1v9m_A           24 FFQEALD-LSFADFLRLL-SETVYGGELAGQ------G---LPDVDRAVLRTQAKLVGDLPRLVTGEARE-AVRLLLLRN   91 (323)
T ss_dssp             HHHHHTT-CCHHHHHHHH-HTSGGGGGCCCS------S---HHHHHHHHHHHHHHHTTTHHHHCCHHHHH-HHHHHHHHH
T ss_pred             HHHHHHh-CCHHHHHHHH-hcCchHHHHhhc------C---HHHHHHHHHHHHHHHHHHHHHHCCccHHH-HHHHHHHHH
Confidence            5667777 9999999998 779999987532      1   45678999998888866555666776555 446778999


Q ss_pred             HHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHHHHHhhcCcccHHhhhhc----CCCCCCcHHHH
Q 025862          113 DRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL----SYGESQMLDKA  188 (247)
Q Consensus       113 Drr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v~~~l~~~~~Y~~i~~~~----~~~~~~~lEd~  188 (247)
                      |..+|+..+.++-.+.++++.. +.|  |.+....++.|.++.|++++.+++.+++ |...+...    ...+...+|..
T Consensus        92 di~Nik~ilr~~~~~~~~~~l~-~~~--g~~~~~~l~~l~~a~~~~el~~~L~~t~-y~~~l~~~~~~~~~~~~~~~e~~  167 (323)
T 1v9m_A           92 DLHNLQALLRAKATGRPFEEVL-LLP--GTLREEVWRQAYEAQDPAGMAQVLAVPG-HPLARALRAVLRETQDLARVEAL  167 (323)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGCC-CCS--CSSCHHHHHHHHHSSSHHHHHHHHHTTT-CHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCccccc-cCC--CCCCHHHHHHHHhCCCHHHHHHHHhccc-cchHHHHHHHHHHcCCcHHHHHH
Confidence            9999999999985555666555 777  9999999999999999999999999997 44333221    10121223333


Q ss_pred             HH----HHHHHHHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhccccccccccc
Q 025862          189 FY----EEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVV  244 (247)
Q Consensus       189 f~----~~ev~~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~~~~i~~~i~  244 (247)
                      ++    +.-.+.++     .++-.++-.|+. .|-+++||.|+-+|+.++. + +.++++
T Consensus       168 Ldk~y~~~~~~~~~-----~~~~~~l~~~~~-~~iD~~Ni~~~lr~~~~~~-~-i~~~li  219 (323)
T 1v9m_A          168 LAKRFFEDVAKAAK-----GLDQPALRDYLA-LEVDAENLRTAFKLQGSGL-A-PDAFFL  219 (323)
T ss_dssp             HHHHHHHHHHC------------CHHHHHHH-HHHHHHHHHHHHHTTTSCC-C-GGGTCC
T ss_pred             HHHHHHHHHHHHHh-----hcChHHHHHHHH-HHHHHHHHHHHHHHHHcCC-C-HHHhcc
Confidence            33    33322221     123367777755 7899999999999999986 4 655554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d1v9ma_	319	f.40.1.1 (A:) V-type ATP synthase subunit C {Therm	2e-34

>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]} Length = 319

class: Membrane and cell surface proteins and peptides
fold: V-type ATP synthase subunit C
superfamily: V-type ATP synthase subunit C
family: V-type ATP synthase subunit C
domain: V-type ATP synthase subunit C
species: Thermus thermophilus [TaxId: 274]

 Score =  123 bits (311), Expect = 2e-34
 Identities = 37/237 (15%), Positives = 69/237 (29%), Gaps = 21/237 (8%)

Query: 1   MIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYR-LVLVDTPLA 57
            + N+  ++      R  +E+L      G            AQ+   + + L +   PLA
Sbjct: 88  DLHNLQALLRAKATGRPFEEVL---LLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLA 144

Query: 58  PYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAV 117
                       +  ++  +   L K + ED  K      G     + D LA E D   +
Sbjct: 145 RALRAV----LRETQDLARVEALLAKRFFEDVAKAA---KGLDQPALRDYLALEVDAENL 197

Query: 118 NITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL 177
                  G+ L        +   G           + E    V   +   P         
Sbjct: 198 RTAFKLQGSGL---APDAFFLKGGRFVDR-VRFARLMEGDYAVLDELSGTP----FSGLS 249

Query: 178 SYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQN 234
              + + L++      +K      +     G+  AY++ RE E   L  ++      
Sbjct: 250 GVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFG 306

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1v9ma_	319	V-type ATP synthase subunit C {Thermus thermophilu	99.97
d1v9ma_	319	V-type ATP synthase subunit C {Thermus thermophilu	98.08

>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]}

class: Membrane and cell surface proteins and peptides
fold: V-type ATP synthase subunit C
superfamily: V-type ATP synthase subunit C
family: V-type ATP synthase subunit C
domain: V-type ATP synthase subunit C
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=3.2e-32  Score=243.77  Aligned_cols=224  Identities=17%  Similarity=0.226  Sum_probs=183.7

Q ss_pred             CchhHHHHHHhhhcCCChHHHHhhhcCCCCcc--cchhhhhcCCHHHHHHHHH-hcCCCchhhhhccCccccccccHHHH
Q 025862            1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVL-VDTPLAPYFSECITSEDLDDMNIEIM   77 (247)
Q Consensus         1 MIdNv~lLi~g~~~~r~~~ell~~chPLG~F~--~l~~l~va~~~~eLy~~vL-vdTPla~yf~~~l~~~dlde~nieii   77 (247)
                      ||+||+.+|+|+.+|++.+++   .+|.|.|+  .+..+..+++++++...+- .+||+++.+.++..+    +.|+..+
T Consensus        88 ~i~Nik~llr~~~~g~~~~~l---l~~~g~~~~~~l~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~d~~~i  160 (319)
T d1v9ma_          88 DLHNLQALLRAKATGRPFEEV---LLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRE----TQDLARV  160 (319)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGC---CCCSCSSCHHHHHHHHHSSSHHHHHHHHHTTTCHHHHHHHHHHTT----CCCHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHh---ccCCCccCHHHHHHHHhCCCHHHHHHHhcccCchHHHHHHHHhhc----CCCHHHH
Confidence            589999999999999999988   57999999  4788889999999998764 589999999877532    3489999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCCh-hhHHhhccCCC
Q 025862           78 RNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYP-YGHEELAVCED  156 (247)
Q Consensus        78 rn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p-~~~~~La~a~d  156 (247)
                      ++.|+|+|++++++.+   +|.++++|.+++++++|++||++++|+++.+++.+   .+++.+|.+.+ +....++  ++
T Consensus       161 e~~Ld~~y~~~l~~~~---~~~~~~~l~~~~~~~iD~~Ni~~~~R~k~~~~~~~---~~li~~g~~~~~~~~~~~~--~~  232 (319)
T d1v9ma_         161 EALLAKRFFEDVAKAA---KGLDQPALRDYLALEVDAENLRTAFKLQGSGLAPD---AFFLKGGRFVDRVRFARLM--EG  232 (319)
T ss_dssp             HHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHTTTSCCCGG---GTCCSSCSSCCHHHHHHHH--TT
T ss_pred             HHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHhccCCCHH---HhcCCCCCCCcHHHHHHhh--cC
Confidence            9999999999999654   56678899999999999999999999999887765   57889997644 5555554  46


Q ss_pred             hHHHHHHhhcCcccHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhccc
Q 025862          157 IDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQK  236 (247)
Q Consensus       157 ~e~v~~~l~~~~~Y~~i~~~~~~~~~~~lEd~f~~~ev~~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~~  236 (247)
                      .+++...+.+++ |......   ++..++|++++.+..+.++.++..||++||+|||+++||+|||||.||++|+.-+-.
T Consensus       233 ~~~~~~~L~~t~-y~~~~~~---~~~~~~e~~~~~~~~~~~~~~~~~~~s~~~i~aYl~~ke~Ei~nL~~I~~gk~~~l~  308 (319)
T d1v9ma_         233 DYAVLDELSGTP-FSGLSGV---RDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLP  308 (319)
T ss_dssp             CGGGGGSCTTST-TGGGTTC---CSHHHHHHHHHHHHHHHHGGGGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhch-hhhhhcc---ccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            678889999888 8765433   334689999999999999999999999999999999999999999999999987643


Q ss_pred             -ccccccc
Q 025862          237 -SRVHDSV  243 (247)
Q Consensus       237 -~~i~~~i  243 (247)
                       ++|.+++
T Consensus       309 ~e~I~~~l  316 (319)
T d1v9ma_         309 RAQVEEEV  316 (319)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHc
Confidence             4455444

>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]}

class: Membrane and cell surface proteins and peptides
fold: V-type ATP synthase subunit C
superfamily: V-type ATP synthase subunit C
family: V-type ATP synthase subunit C
domain: V-type ATP synthase subunit C
species: Thermus thermophilus [TaxId: 274]

Probab=98.08  E-value=1.7e-05  Score=68.77  Aligned_cols=181  Identities=13%  Similarity=0.110  Sum_probs=122.9

Q ss_pred             cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHH
Q 025862           33 SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA  112 (247)
Q Consensus        33 ~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEA  112 (247)
                      +...|.-+ +++|+.+. |-+|+|++++.+         .+..-++..|.+....+|.+.....+|+.+++ -+++-..-
T Consensus        20 ~~~~L~~~-s~~e~~~~-L~~t~Y~~~l~~---------~~~~~ie~~L~~~l~~~~~~l~~~~~~~~k~~-~~~~~~~~   87 (319)
T d1v9ma_          20 FFQEALDL-SFADFLRL-LSETVYGGELAG---------QGLPDVDRAVLRTQAKLVGDLPRLVTGEAREA-VRLLLLRN   87 (319)
T ss_dssp             HHHHHTTC-CHHHHHHH-HHTSGGGGGCCC---------SSHHHHHHHHHHHHHHHTTTHHHHCCHHHHHH-HHHHHHHH
T ss_pred             HHHHHHcC-CHHHHHHH-HHhCCchhhhhc---------cChHHHHHHHHHHHHHHHHHHHHHCCchHHHH-HHHHHHHH
Confidence            45566666 79998877 599999887743         23445678888888888888888888875554 45556789


Q ss_pred             HHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHHHHHhh--cCcccHHhhhhc--CCCCCCc----
Q 025862          113 DRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVME--KYPPYQSIFSKL--SYGESQM----  184 (247)
Q Consensus       113 Drr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v~~~l~--~~~~Y~~i~~~~--~~~~~~~----  184 (247)
                      |..+|+..+.++..+-+.+   .++-..|.+.......|..+.+++++..++.  +++ |.+.+...  .+++...    
T Consensus        88 ~i~Nik~llr~~~~g~~~~---~ll~~~g~~~~~~l~~l~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~d~~~ie~~  163 (319)
T d1v9ma_          88 DLHNLQALLRAKATGRPFE---EVLLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHP-LARALRAVLRETQDLARVEAL  163 (319)
T ss_dssp             HHHHHHHHHHHHHHTCCGG---GCCCCSCSSCHHHHHHHHHSSSHHHHHHHHHTTTCH-HHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHH---HhccCCCccCHHHHHHHHhCCCHHHHHHHhcccCch-HHHHHHHHhhcCCCHHHHHHH
Confidence            9999999999985544433   3344479998888899999999999999886  555 55544322  2222223    


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhcc
Q 025862          185 LDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQ  235 (247)
Q Consensus       185 lEd~f~~~ev~~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~  235 (247)
                      |+...++.-.+..+     ...-..+-.|++ -+-..+||.|+-+++.|+.
T Consensus       164 Ld~~y~~~l~~~~~-----~~~~~~l~~~~~-~~iD~~Ni~~~~R~k~~~~  208 (319)
T d1v9ma_         164 LAKRFFEDVAKAAK-----GLDQPALRDYLA-LEVDAENLRTAFKLQGSGL  208 (319)
T ss_dssp             HHHHHHHHHHC------------CHHHHHHH-HHHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHhc-----cchHHHHHHHHH-HHHHHHHHHHHHHHhccCC
Confidence            44444444333321     223346666775 5789999999999998865