Citrus Sinensis ID: 025868

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MAEAGRGTTKRKMGERRREADAKKSTTTTSNWPIIKPKQDLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVVFA
cccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEcccccHHHHHHHHHHHHHcccEEccccccccccEEEEccEEEEEcHHHHHHHHHHccccccHHHHHHccccccccccEEEEEEccccEEccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccEEccccccccEEEEcccccEEEEEcccccccccccccccccEEEEEEEEEcc
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHccccccccccccccccEccccEEEEccHHHHHHHHHHHHHHccccccccccEEEcccccEEEEEEcccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEccccccccccEEEEEEcEEEc
maeagrgttkrkmgerrreadakksttttsnwpiikpkqdlrvsrlkdtdlftvqnfftsaeSKGFVKAAEAMGfvhqgslgplkgeayrdndrisvndpvlAETVWESGLSKLFTDIKIRgklavglnpnirfyrykvgqrfgqhidesvnlgdgkrtHYTLLIYLSGglkakakndlsihndsspeplvggetvfygsrnkllaevapiEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVVFA
maeagrgttkrkmgerrreadakksttttsnwpiikpkqdlrvsrlKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKirgklavglnpnIRFYRYKVGQRFGQHIDesvnlgdgkrTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVVFA
MAEAGRGTTKRKMGERRREADAKKSTTTTSNWPIIKPKQDLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVVFA
*******************************WPIIKPKQDLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAK***************LVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVVF*
*********************************IIKPKQDLRVSRLKDTDLFTVQNFFTSAESKGFVKAAE*******************DNDRISVNDPVLAETVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVVFA
*****************************SNWPIIKPKQDLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVVFA
*******************************WPIIKPKQDLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGL***AKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVVFA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAEAGRGTTKRKMGERRREADAKKSTTTTSNWPIIKPKQDLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVVFA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
224134643240 predicted protein [Populus trichocarpa] 0.959 0.987 0.748 1e-107
225455669240 PREDICTED: uncharacterized protein LOC10 0.971 1.0 0.765 1e-106
255539601239 oxidoreductase, putative [Ricinus commun 0.967 1.0 0.744 1e-103
351723151244 uncharacterized protein LOC100526938 [Gl 0.963 0.975 0.726 1e-100
388509330284 unknown [Medicago truncatula] 0.935 0.813 0.738 1e-100
449465174244 PREDICTED: uncharacterized protein LOC10 0.959 0.971 0.739 3e-99
409893133238 hypothetical protein, partial [Scutellar 0.955 0.991 0.694 1e-93
357444129261 hypothetical protein MTR_1g101840 [Medic 0.842 0.796 0.659 4e-84
297792507227 oxidoreductase [Arabidopsis lyrata subsp 0.874 0.951 0.715 7e-84
357114338254 PREDICTED: uncharacterized protein LOC10 0.829 0.807 0.689 3e-82
>gi|224134643|ref|XP_002321873.1| predicted protein [Populus trichocarpa] gi|222868869|gb|EEF06000.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/250 (74%), Positives = 211/250 (84%), Gaps = 13/250 (5%)

Query: 1   MAEA---GRGTTKRKMGERRREADAKKSTTTTSNWPIIKPKQDLRVSRLKDTDLFTVQNF 57
           MAEA   GR   +RKMG+R+              WP+IKPK++L+++RLKDTDLFTVQ+F
Sbjct: 1   MAEAEKAGRIAKRRKMGDRK----------AAEKWPLIKPKKNLQITRLKDTDLFTVQDF 50

Query: 58  FTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTD 117
           F+SAESK FVKAAE++GF HQGSLGP  GEAYRDNDR+SV+DPVLA  VWESGLSKLF+D
Sbjct: 51  FSSAESKAFVKAAESIGFAHQGSLGPTHGEAYRDNDRLSVSDPVLANAVWESGLSKLFSD 110

Query: 118 IKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKN 177
           IKIRGK+AVGLNPNIRFYRYK GQRFG+HIDESVNLGDGKRTHYTLLIYLSG  KAK K 
Sbjct: 111 IKIRGKVAVGLNPNIRFYRYKAGQRFGRHIDESVNLGDGKRTHYTLLIYLSGATKAKTKT 170

Query: 178 DLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVK 237
           DL+   DSS EPLVGGETVFYG RN ++A+VAP+EGMAL+HIHGDKCMLHEARNV KGVK
Sbjct: 171 DLNSQKDSSSEPLVGGETVFYGPRNSVVADVAPVEGMALLHIHGDKCMLHEARNVTKGVK 230

Query: 238 YIFRSDVVFA 247
           YIFRSDV FA
Sbjct: 231 YIFRSDVCFA 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455669|ref|XP_002263622.1| PREDICTED: uncharacterized protein LOC100262964 [Vitis vinifera] gi|296084075|emb|CBI24463.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539601|ref|XP_002510865.1| oxidoreductase, putative [Ricinus communis] gi|223549980|gb|EEF51467.1| oxidoreductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351723151|ref|NP_001236245.1| uncharacterized protein LOC100526938 [Glycine max] gi|255631189|gb|ACU15960.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388509330|gb|AFK42731.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449465174|ref|XP_004150303.1| PREDICTED: uncharacterized protein LOC101210552 [Cucumis sativus] Back     alignment and taxonomy information
>gi|409893133|gb|AFV46208.1| hypothetical protein, partial [Scutellaria baicalensis] Back     alignment and taxonomy information
>gi|357444129|ref|XP_003592342.1| hypothetical protein MTR_1g101840 [Medicago truncatula] gi|355481390|gb|AES62593.1| hypothetical protein MTR_1g101840 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297792507|ref|XP_002864138.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297309973|gb|EFH40397.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357114338|ref|XP_003558957.1| PREDICTED: uncharacterized protein LOC100845936 [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2166503250 AT5G51880 [Arabidopsis thalian 0.935 0.924 0.705 1.3e-82
ASPGD|ASPL0000075943255 AN4986 [Emericella nidulans (t 0.878 0.850 0.329 2.3e-23
CGD|CAL0004314251 orf19.2001 [Candida albicans ( 0.720 0.709 0.361 1.9e-21
UNIPROTKB|Q5AD66251 CaO19.2001 "Putative uncharact 0.720 0.709 0.361 1.9e-21
UNIPROTKB|Q2KG39296 MGCH7_ch7g496 "Putative unchar 0.595 0.496 0.345 6.7e-17
DICTYBASE|DDB_G0287671210 DDB_G0287671 [Dictyostelium di 0.663 0.780 0.284 4.6e-10
DICTYBASE|DDB_G0284409252 iliB "oxoglutarate/iron-depend 0.461 0.452 0.289 7.3e-10
DICTYBASE|DDB_G0281783 781 DDB_G0281783 [Dictyostelium di 0.797 0.252 0.277 2.3e-09
DICTYBASE|DDB_G0285501322 DDB_G0285501 [Dictyostelium di 0.246 0.189 0.359 3.2e-09
UNIPROTKB|G4ND70342 MGG_00953 "Uncharacterized pro 0.449 0.324 0.311 4.3e-06
TAIR|locus:2166503 AT5G51880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 165/234 (70%), Positives = 187/234 (79%)

Query:    17 RREADAKKSTTTTS-NWPIIKPKQDLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEAMGF 75
             ++  +AK      S  WP IK K +L VS LK+ DLFTV+N  TS ESK FVK AE++GF
Sbjct:    17 QKPRNAKMGDNGESIKWPKIKLKSNLNVSYLKNHDLFTVENCLTSDESKAFVKIAESLGF 76

Query:    76 VHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIRGKLAVGLNPNIRFY 135
              HQGS GP  GEAYRDN RISVNDPVLA+T+W+SGLS LFTDIKIR K+AVGLNPNIRFY
Sbjct:    77 THQGSRGPAYGEAYRDNHRISVNDPVLADTLWQSGLSNLFTDIKIRRKVAVGLNPNIRFY 136

Query:   136 RYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGG-LKAKAKNDLSIHNDSSP-EPLVGG 193
             RY  GQ FG+HIDES +L DG RT+YTLLIYLSG   K+K+K+  S  NDSS  EPLVGG
Sbjct:   137 RYSAGQHFGRHIDESADLEDGNRTYYTLLIYLSGNSTKSKSKSSSSKTNDSSSAEPLVGG 196

Query:   194 ETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVVFA 247
             ETVFYGSRN ++AEVAP+EGMAL HIHGDKCMLHE RNV KGVKY+FRSDVVFA
Sbjct:   197 ETVFYGSRNSIVAEVAPVEGMALFHIHGDKCMLHEGRNVSKGVKYVFRSDVVFA 250
GO:0005506 "iron ion binding" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
ASPGD|ASPL0000075943 AN4986 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0004314 orf19.2001 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AD66 CaO19.2001 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KG39 MGCH7_ch7g496 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287671 DDB_G0287671 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284409 iliB "oxoglutarate/iron-dependent oxygenase family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281783 DDB_G0281783 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285501 DDB_G0285501 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4ND70 MGG_00953 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 1e-18
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 0.002
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information 
 Score = 79.4 bits (196), Expect = 1e-18
 Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 40/190 (21%)

Query: 59  TSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDI 118
           + AE +  ++ AE +G+  + + G           R S          W   L +     
Sbjct: 1   SPAECQKLLEEAEPLGWRGEVTRGIG-NPNETSQYRQSNGT-------WLELLERDLVIE 52

Query: 119 KIRGKLA---------VGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSG 169
           +IR +LA              + +  RY  G  +G H+D   N   G R   T ++YL+ 
Sbjct: 53  RIRQRLADFLGLLAGLPLSAEDAQVARYGPGGHYGPHVD---NFLYGDRI-ATFILYLN- 107

Query: 170 GLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEA 229
                             +   GGE VF G R  ++A V P +G  L    G    LH  
Sbjct: 108 ------------------DVEEGGELVFPGLRLMVVATVKPKKGDLLFFPSGHGRSLHGV 149

Query: 230 RNVIKGVKYI 239
             V +G ++ 
Sbjct: 150 CPVTRGSRWA 159

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Length = 165
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 99.97
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 99.96
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.89
PHA02813 354 hypothetical protein; Provisional 99.84
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.81
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.68
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 99.01
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 99.0
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 99.0
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 98.47
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.44
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 98.34
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.23
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 98.0
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 98.0
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 97.98
PHA02866 333 Hypothetical protein; Provisional 97.63
COG3826236 Uncharacterized protein conserved in bacteria [Fun 97.47
KOG3844 476 consensus Predicted component of NuA3 histone acet 97.41
TIGR02466201 conserved hypothetical protein. This family consis 97.41
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 96.88
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 96.66
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 94.36
PHA02923 315 hypothetical protein; Provisional 94.13
PF06822 266 DUF1235: Protein of unknown function (DUF1235); In 92.14
KOG4459471 consensus Membrane-associated proteoglycan Lepreca 87.38
PF05118163 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl 86.62
PHA02985 271 hypothetical protein; Provisional 86.13
PLN02365300 2-oxoglutarate-dependent dioxygenase 85.4
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.74
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 83.63
PF10014195 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018 83.36
PLN02904357 oxidoreductase 82.43
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 82.25
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 81.5
KOG3200224 consensus Uncharacterized conserved protein [Funct 81.16
PLN02403303 aminocyclopropanecarboxylate oxidase 80.91
PLN02485329 oxidoreductase 80.56
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-35  Score=266.90  Aligned_cols=183  Identities=25%  Similarity=0.292  Sum_probs=145.9

Q ss_pred             CCCCCCCCcceeeeec-CCCEEEEcCCCCHHHHHHHHHHHHhCCceeccC----CCCccCCceeecceEEecC--HHHHH
Q 025868           32 WPIIKPKQDLRVSRLK-DTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGS----LGPLKGEAYRDNDRISVND--PVLAE  104 (247)
Q Consensus        32 ~p~~~p~~~l~v~~~~-~~~i~vi~~fLs~~EC~~Li~~~e~~~~~~~~~----~~~~~~~~~R~~~~~~~~~--~~~~~  104 (247)
                      .|.|.|   .+++.|+ +|.|++|+||||++||++||++++.. +.++..    .+......+|++...+++.  ..+++
T Consensus        39 ~~~~~~---~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~-l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~  114 (310)
T PLN00052         39 APPFNA---SRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKK-IQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVS  114 (310)
T ss_pred             CCCcCC---ceEEEecCCCCEEEECCcCCHHHHHHHHHhcccc-cccceeecCCCCccccCCCEEecceeecCCCCHHHH
Confidence            455655   7888887 68999999999999999999999874 443322    1222345689999988864  45788


Q ss_pred             HHHHHhhhhhhhhhhhhcccccccCCceEEEecCCCCcccccccCCccC---CCCceeEEEEEEEecCccccccccccCC
Q 025868          105 TVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNL---GDGKRTHYTLLIYLSGGLKAKAKNDLSI  181 (247)
Q Consensus       105 ~l~~ri~~~~~~~~~~~~~~~~~l~e~~q~~rY~~G~~f~~H~D~~~~~---~~~~~r~~T~llYLN~~~~~~~~~~~~~  181 (247)
                      +|.+|+.. +       .+.+....|.||++||++||+|.+|+|++...   ..+++|++|+|+|||             
T Consensus       115 ~I~~Ria~-~-------t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLn-------------  173 (310)
T PLN00052        115 RIEERIAA-W-------TFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLS-------------  173 (310)
T ss_pred             HHHHHHHH-H-------hCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEec-------------
Confidence            89888633 2       23455678999999999999999999987532   235688999999999             


Q ss_pred             CCCCCCCCCcCcceEEecCCC--------------ceeeEEecCCCcEEEEecC------CCCCcccccccccccEEEEE
Q 025868          182 HNDSSPEPLVGGETVFYGSRN--------------KLLAEVAPIEGMALIHIHG------DKCMLHEARNVIKGVKYIFR  241 (247)
Q Consensus       182 ~~~~~~d~~eGGeT~F~~~~~--------------~~~~~V~P~~G~aviF~~~------d~~~lH~g~PV~~G~Kyiir  241 (247)
                            |+.+||||.||....              +.+++|+|++|+||+|+|.      |.+++|+||||++|+||+++
T Consensus       174 ------dv~~GGeT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~at  247 (310)
T PLN00052        174 ------TVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAP  247 (310)
T ss_pred             ------cCCCCCceecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEE
Confidence                  789999999997521              1368999999999999973      46899999999999999999


Q ss_pred             Eeee
Q 025868          242 SDVV  245 (247)
Q Consensus       242 tdv~  245 (247)
                      -|+.
T Consensus       248 kWi~  251 (310)
T PLN00052        248 KWIH  251 (310)
T ss_pred             Eeee
Confidence            9985

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown] Back     alignment and domain information
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1 Back     alignment and domain information
>PHA02985 hypothetical protein; Provisional Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 6e-11
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 6e-08
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 1e-04
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score = 59.5 bits (144), Expect = 6e-11
 Identities = 43/216 (19%), Positives = 71/216 (32%), Gaps = 54/216 (25%)

Query: 51  LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVW-ES 109
            F ++NF +  E    V+ A     V    +    G++     R S          W   
Sbjct: 22  AFLLKNFLSDEECDYIVEKARP-KMVKSSVVDNESGKSVDSEIRTS-------TGTWFAK 73

Query: 110 GLSKLFTDIKIRGKLAVGLNPN----IRFYRYKVGQRFGQHID-----ESVNLGDGKRTH 160
           G   + + I+ R      +       ++   Y  GQ++  H D      +     G +  
Sbjct: 74  GEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRV 133

Query: 161 YTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAE-----------VA 209
            T+L+YL+                       GGETV   +  K+  +           V 
Sbjct: 134 VTMLMYLT-------------------TVEEGGETVLPNAEQKVTGDGWSECAKRGLAVK 174

Query: 210 PIEGMALI----HIHG--DKCMLHEARNVIKGVKYI 239
           PI+G AL+       G  D   LH +   +KG K+ 
Sbjct: 175 PIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWS 210
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.92
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 99.37
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.94
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 98.04
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.98
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 97.84
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 97.83
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 97.71
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.59
3nnf_A 344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 96.41
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 95.39
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 95.06
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 93.26
3pl0_A254 Uncharacterized protein; quorum sensing, biofilm f 88.64
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 88.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 86.73
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 80.08
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=3.4e-36  Score=259.40  Aligned_cols=178  Identities=22%  Similarity=0.286  Sum_probs=140.8

Q ss_pred             cceeeeec-CCCEEEEcCCCCHHHHHHHHHHHHhCCceeccC----CCCccCCceeecceEEecC--HHHHHHHHHHhhh
Q 025868           40 DLRVSRLK-DTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGS----LGPLKGEAYRDNDRISVND--PVLAETVWESGLS  112 (247)
Q Consensus        40 ~l~v~~~~-~~~i~vi~~fLs~~EC~~Li~~~e~~~~~~~~~----~~~~~~~~~R~~~~~~~~~--~~~~~~l~~ri~~  112 (247)
                      ..++|.|+ ++.|++++||||++||++||++++. .+.++..    .+......+|++...|++.  ..+++.|++|+..
T Consensus        10 ~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~-~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~ri~~   88 (224)
T 2jig_A           10 RGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARP-KMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQ   88 (224)
T ss_dssp             CCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGG-GCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHHHHH
T ss_pred             CcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhc-cCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHHHHH
Confidence            35678887 6799999999999999999999987 3554432    1222345689998899874  5688889988633


Q ss_pred             hhhhhhhhhcccccccCCceEEEecCCCCcccccccCCccC-----CCCceeEEEEEEEecCccccccccccCCCCCCCC
Q 025868          113 KLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNL-----GDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSP  187 (247)
Q Consensus       113 ~~~~~~~~~~~~~~~l~e~~q~~rY~~G~~f~~H~D~~~~~-----~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~  187 (247)
                       +.       ..+...+|.+||+||.+|++|++|+|.+...     ..+.+|++|+|+|||                   
T Consensus        89 -~~-------gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLn-------------------  141 (224)
T 2jig_A           89 -VT-------MIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLT-------------------  141 (224)
T ss_dssp             -HH-------TCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECS-------------------
T ss_pred             -Hh-------CCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEec-------------------
Confidence             21       1334567899999999999999999997643     234578999999999                   


Q ss_pred             CCCcCcceEEecCCC-----------ceeeEEecCCCcEEEEec------CCCCCcccccccccccEEEEEEeee
Q 025868          188 EPLVGGETVFYGSRN-----------KLLAEVAPIEGMALIHIH------GDKCMLHEARNVIKGVKYIFRSDVV  245 (247)
Q Consensus       188 d~~eGGeT~F~~~~~-----------~~~~~V~P~~G~aviF~~------~d~~~lH~g~PV~~G~Kyiirtdv~  245 (247)
                      |+++||||+|+....           +..+.|+|++|+||||++      .|.+++|+||||++|+||+++.|+-
T Consensus       142 d~~~GGeT~Fp~~~~~~~~~~~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~  216 (224)
T 2jig_A          142 TVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIH  216 (224)
T ss_dssp             CCSEECCEEETTSSSCCCSTTSCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEE
T ss_pred             CCCCCCceeCCCcccccccccccccccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEE
Confidence            788999999997531           125899999999999987      1457999999999999999999984
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum} Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 98.23
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 98.12
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 96.11
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 94.48
d1ds1a_323 Clavaminate synthase {Streptomyces clavuligerus [T 92.07
d1otja_281 Taurine/alpha-ketoglutarate dioxygenase TauD {Esch 91.1
d1jr7a_311 Gab protein (hypothetical protein YgaT) {Escherich 89.92
d1oiha_288 Putative alkylsulfatase AtsK {Pseudomonas putida [ 87.58
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 86.92
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 85.66
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.2e-06  Score=72.53  Aligned_cols=31  Identities=13%  Similarity=0.286  Sum_probs=26.5

Q ss_pred             eeeeecCCCEEEEcCCCCHHHHHHHHHHHHh
Q 025868           42 RVSRLKDTDLFTVQNFFTSAESKGFVKAAEA   72 (247)
Q Consensus        42 ~v~~~~~~~i~vi~~fLs~~EC~~Li~~~e~   72 (247)
                      +++.+...++++++|||++++|++|.+.+++
T Consensus        15 q~~~f~~~Gyvvi~~~l~~~~~~~l~~~~~~   45 (296)
T d2a1xa1          15 QRKFYEENGFLVIKNLVPDADIQRFRNEFEK   45 (296)
T ss_dssp             HHHHHHHHSEEEETTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCEEEccCcCCHHHHHHHHHHHHH
Confidence            4455677899999999999999999988876
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ds1a_ b.82.2.2 (A:) Clavaminate synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase TauD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure