Citrus Sinensis ID: 025879

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MMMTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGALKEP
cccHHHHHHHHHcccccccccccccccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHccccccccEEEEccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHcccEEEEEEEccccccc
ccccHHHHHHHHHHcccccccEEccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccHHHHHHHcccccccccEEEEEcccccccccccccccHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccHHHHccccccccccHHHHHHHHHHHHHHcccEEEEEEEEcccccc
MMMTSKTIDLLRNelpveqeslflsgdvktGLVLVDVVNGfctvgsgnlapsqpdgqiseMVDESVRLARVFCekkwpvfafldthypdvpeppypphcisgtdesnlvpelqwlenetnvtlrrKDCIDGflgsvekdgsNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCStlsarnrgflapleDVIVYSrgcatydfpvHVAKnikdalphpqdlmHHIGLFIakgrgakvvsgvsfgalkep
MMMTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSgnlapsqpdgqiSEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLsarnrgflapLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGALKEP
MMMTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYpdvpeppyppHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGALKEP
**************LPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGN*************VDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSF******
*****KT**LLRNELPVEQ*****SGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGA****
MMMTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGALKEP
**MTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGA****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMMTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFGALKEP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query247 2.2.26 [Sep-21-2011]
O32091183 Uncharacterized isochoris yes no 0.639 0.863 0.267 2e-07
>sp|O32091|PNCA_BACSU Uncharacterized isochorismatase family protein PncA OS=Bacillus subtilis (strain 168) GN=pncA PE=3 SV=1 Back     alignment and function desciption
 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 29/187 (15%)

Query: 28  VKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHY 87
           +K  L+ +D  N F     G L   +P   I E +   V L + F      V   +D+H 
Sbjct: 1   MKKALICIDYTNDF-VASDGKLTCGEPGRMIEEAI---VNLTKEFITNGDYVVLAVDSHD 56

Query: 88  PDVPEPP----YPPHCISGTDESNL----VPELQWLENETNVTLRRKDCIDGFLGS-VEK 138
                 P    +PPH I GT+  +L    +P  Q  E+E NV    K     F G+ +E 
Sbjct: 57  EGDQYHPETRLFPPHNIKGTEGKDLYGKLLPLYQKHEHEPNVYYMEKTRYSAFAGTDLEL 116

Query: 139 DGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCAT 198
                    ++  QI  + + G+CTD+CVL    + + A N+GF      ++V+ +  A+
Sbjct: 117 K--------LRERQIGELHLAGVCTDICVLH---TAVDAYNKGF-----RIVVHKQAVAS 160

Query: 199 YDFPVHV 205
           ++   H 
Sbjct: 161 FNQEGHA 167

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
225464087248 PREDICTED: uncharacterized isochorismata 0.987 0.983 0.709 1e-106
224084455246 predicted protein [Populus trichocarpa] 0.979 0.983 0.738 1e-105
225468460245 PREDICTED: uncharacterized isochorismata 0.987 0.995 0.795 1e-104
255586657243 catalytic, putative [Ricinus communis] g 0.983 1.0 0.761 1e-104
224093276245 predicted protein [Populus trichocarpa] 0.991 1.0 0.706 1e-103
388517859245 unknown [Lotus japonicus] 0.987 0.995 0.672 1e-101
296088949238 unnamed protein product [Vitis vinifera] 0.959 0.995 0.793 1e-101
388508362245 unknown [Lotus japonicus] 0.987 0.995 0.668 1e-100
357476213269 Isochorismatase family protein pncA, put 0.987 0.907 0.659 1e-100
388491036245 unknown [Medicago truncatula] 0.987 0.995 0.659 2e-99
>gi|225464087|ref|XP_002270896.1| PREDICTED: uncharacterized isochorismatase family protein pncA [Vitis vinifera] gi|147771197|emb|CAN72022.1| hypothetical protein VITISV_006364 [Vitis vinifera] gi|296088776|emb|CBI38226.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 173/244 (70%), Positives = 215/244 (88%)

Query: 3   MTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMV 62
           M SKT+DLL+ ELP+EQES+ L  DV TGLVLVD++NGFCTVG+GNLAP +P+ QIS M+
Sbjct: 1   MVSKTVDLLKKELPLEQESVELCDDVVTGLVLVDIINGFCTVGAGNLAPLEPNQQISGMI 60

Query: 63  DESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVT 122
           DES +LARVFCEKKWP+ AFLD+H PD  E PYP HC++GTDESNLVP+LQW+E E NVT
Sbjct: 61  DESAKLARVFCEKKWPIMAFLDSHRPDQHEHPYPSHCVAGTDESNLVPDLQWIEKEANVT 120

Query: 123 LRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGF 182
           +RRKDC DG++GS+E+DGSNVFV+WV +N+IK +LV+GICTD+CVLDFVCSTLSA+NRGF
Sbjct: 121 IRRKDCYDGYIGSIERDGSNVFVDWVNTNKIKVLLVVGICTDICVLDFVCSTLSAKNRGF 180

Query: 183 LAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFG 242
           L PLEDV+VYSRGCAT+DFP H+A+NIKD++ HPQ+LMHH+GL++AKGRGAK+   VS G
Sbjct: 181 LGPLEDVVVYSRGCATFDFPDHIARNIKDSIAHPQELMHHVGLYMAKGRGAKIARKVSVG 240

Query: 243 ALKE 246
           ++ E
Sbjct: 241 SMHE 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224084455|ref|XP_002307303.1| predicted protein [Populus trichocarpa] gi|222856752|gb|EEE94299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225468460|ref|XP_002266720.1| PREDICTED: uncharacterized isochorismatase family protein pncA [Vitis vinifera] Back     alignment and taxonomy information
>gi|255586657|ref|XP_002533959.1| catalytic, putative [Ricinus communis] gi|223526072|gb|EEF28428.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224093276|ref|XP_002309862.1| predicted protein [Populus trichocarpa] gi|222852765|gb|EEE90312.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388517859|gb|AFK46991.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|296088949|emb|CBI38515.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388508362|gb|AFK42247.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357476213|ref|XP_003608392.1| Isochorismatase family protein pncA, putative [Medicago truncatula] gi|217073560|gb|ACJ85140.1| unknown [Medicago truncatula] gi|355509447|gb|AES90589.1| Isochorismatase family protein pncA, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|388491036|gb|AFK33584.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2041298244 NIC1 "nicotinamidase 1" [Arabi 0.971 0.983 0.619 2.5e-81
UNIPROTKB|Q50575186 pncA "Pyrazinamidase/nicotinam 0.530 0.704 0.276 0.00091
TAIR|locus:2041298 NIC1 "nicotinamidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 150/242 (61%), Positives = 194/242 (80%)

Query:     2 MMTSKTI-DLLRNELPV-EQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQIS 59
             M   +TI D L+ ++PV E+E L L+ D   GLV+VDVVNGFCT+GSGN+AP++ + QIS
Sbjct:     1 MANHETIFDQLKKQIPVDEEEPLILNRDSSVGLVIVDVVNGFCTIGSGNMAPTKHNEQIS 60

Query:    60 EMVDESVRLARVFCEKKWPVFAFLDTHYXXXXXXXXXXHCISGTDESNLVPELQWLENET 119
             +MV+ES +LAR FC++KWPV AF+D+H+          HCI GT+ES LVP L+WLE+E 
Sbjct:    61 KMVEESAKLAREFCDRKWPVLAFIDSHHPDIPERPYPPHCIIGTEESELVPALKWLESED 120

Query:   120 NVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARN 179
               TLRRKDCI+GF+GS+E DGSNVFV+WVK  QIK ++V+GICTD+CV DFV + LSARN
Sbjct:   121 CATLRRKDCINGFVGSMESDGSNVFVDWVKEKQIKVIVVVGICTDICVFDFVATALSARN 180

Query:   180 RGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGV 239
              G L+P+EDV+VYSRGCAT+D P+HVAK+IK A  HPQ+LMHH+GL++AKGRGA+VVS +
Sbjct:   181 HGVLSPVEDVVVYSRGCATFDLPLHVAKDIKGAQAHPQELMHHVGLYMAKGRGAQVVSKI 240

Query:   240 SF 241
             SF
Sbjct:   241 SF 242
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0008936 "nicotinamidase activity" evidence=IMP;IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0019365 "pyridine nucleotide salvage" evidence=IMP
UNIPROTKB|Q50575 pncA "Pyrazinamidase/nicotinamidase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
PLN02743239 PLN02743, PLN02743, nicotinamidase 1e-170
cd00431161 cd00431, cysteine_hydrolases, Cysteine hydrolases; 2e-31
pfam00857173 pfam00857, Isochorismatase, Isochorismatase family 4e-24
COG1335205 COG1335, PncA, Amidases related to nicotinamidase 2e-19
cd01011196 cd01011, nicotinamidase, Nicotinamidase/pyrazinami 3e-12
PTZ00331212 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisio 4e-08
cd01014155 cd01014, nicotinamidase_related, Nicotinamidase_ r 9e-07
PRK11609212 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; 2e-04
>gnl|CDD|215396 PLN02743, PLN02743, nicotinamidase Back     alignment and domain information 
 Score =  469 bits (1209), Expect = e-170
 Identities = 184/239 (76%), Positives = 210/239 (87%)

Query: 3   MTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMV 62
           M S T+DLL+ ELPVEQESL L+GDV+TGLVLVD VNGFCTVG+GNLAP +PD QIS+MV
Sbjct: 1   MVSDTVDLLKKELPVEQESLVLNGDVRTGLVLVDEVNGFCTVGAGNLAPREPDKQISKMV 60

Query: 63  DESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVT 122
           DES RLAR FCE+KWPV AFLD+H+PD PE PYPPHCI GT E NLVP LQWLEN+ NVT
Sbjct: 61  DESARLAREFCERKWPVLAFLDSHHPDKPEHPYPPHCIVGTGEENLVPALQWLENDPNVT 120

Query: 123 LRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGF 182
           LRRKDCIDGF+G++EKDGSNVFV+WV +N+IK +LV+GICTD+CVLDFV S LSARN G 
Sbjct: 121 LRRKDCIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGICTDICVLDFVASALSARNHGI 180

Query: 183 LAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSF 241
           L PLEDV+VYSRGCATYD P+HVAK IK AL HPQ+LMHH+GL++AKGRGAKVVS VSF
Sbjct: 181 LPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELMHHMGLYMAKGRGAKVVSKVSF 239

Length = 239
>gnl|CDD|238245 cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>gnl|CDD|216156 pfam00857, Isochorismatase, Isochorismatase family Back     alignment and domain information
>gnl|CDD|224254 COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|238493 cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>gnl|CDD|240363 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|238496 cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>gnl|CDD|183228 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
PLN02743239 nicotinamidase 100.0
PRK11609212 nicotinamidase/pyrazinamidase; Provisional 100.0
TIGR03614226 RutB pyrimidine utilization protein B. RL Proc Nat 100.0
cd01011196 nicotinamidase Nicotinamidase/pyrazinamidase (PZas 100.0
PTZ00331212 alpha/beta hydrolase; Provisional 100.0
cd01015179 CSHase N-carbamoylsarcosine amidohydrolase (CSHase 100.0
cd01013203 isochorismatase Isochorismatase, also known as 2,3 100.0
PRK11440188 putative hydrolase; Provisional 100.0
PF00857174 Isochorismatase: Isochorismatase family; InterPro: 100.0
PLN02621197 nicotinamidase 100.0
COG1335205 PncA Amidases related to nicotinamidase [Secondary 100.0
cd00431161 cysteine_hydrolases Cysteine hydrolases; This fami 100.0
cd01014155 nicotinamidase_related Nicotinamidase_ related ami 99.98
cd01012157 YcaC_related YcaC related amidohydrolases; E.coli 99.97
COG1535218 EntB Isochorismate hydrolase [Secondary metabolite 99.95
KOG4003223 consensus Pyrazinamidase/nicotinamidase PNC1 [Defe 99.92
KOG4044201 consensus Mitochondrial associated endoribonucleas 99.68
>PLN02743 nicotinamidase Back     alignment and domain information 
Probab=100.00  E-value=1e-50  Score=356.46  Aligned_cols=239  Identities=77%  Similarity=1.315  Sum_probs=208.6

Q ss_pred             chhhHHhhhhccCCCCccccccCCCCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEE
Q 025879            3 MTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAF   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~   82 (247)
                      |.|.|++.|+.++|+.+.+.....++++|||||||||+|+.++.|.++.....+....+++++++|++.||++|+||||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tALlVIDmQndF~~~~~g~l~~~~~~~~~~~iv~~i~~Ll~~aR~~g~pVI~~   80 (239)
T PLN02743          1 MVSDTVDLLKKELPVEQESLVLNGDVRTGLVLVDEVNGFCTVGAGNLAPREPDKQISKMVDESARLAREFCERKWPVLAF   80 (239)
T ss_pred             ChHHHHHHHHHhCCCccccccccCCCCEEEEEEeCcCCccCCCccccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence            57899999999999777665444589999999999999998643445433222345679999999999999999999999


Q ss_pred             eecCCCCCCCCCCCCCccCCCCCCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeee
Q 025879           83 LDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGIC  162 (247)
Q Consensus        83 ~~~h~~~~~~~~wp~~~~~gt~g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~  162 (247)
                      ++.|.++..+..||.||..||+|++++++|+|.+++....++.|++||+|++|+++.+++.|..+|+++||++|+|+|++
T Consensus        81 ~d~h~~~~~~~~~~~h~v~Gt~g~ei~~~L~p~~~~~~v~v~~K~~~saF~~t~~~~~t~~L~~~Lr~~gI~~liv~Gv~  160 (239)
T PLN02743         81 LDSHHPDKPEHPYPPHCIVGTGEENLVPALQWLENDPNVTLRRKDCIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGIC  160 (239)
T ss_pred             eCccCCCccccCCCCccCCCCcccccchhhCCCCCCceEEEEecCccccccccccccCccHHHHHHHHCCCCEEEEEEeC
Confidence            99998776667799999999999999999998766533347789999999997655554448999999999999999999


Q ss_pred             cCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeecccc
Q 025879          163 TDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSF  241 (247)
Q Consensus       163 Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~~  241 (247)
                      ||+||+||++|+++|+++||++|+++|+|++|||++++.+.|.+++++++..|+++++|+++++++..+||+|++.+.|
T Consensus       161 T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~at~d~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  239 (239)
T PLN02743        161 TDICVLDFVASALSARNHGILPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELMHHMGLYMAKGRGAKVVSKVSF  239 (239)
T ss_pred             cchhccChHHHHHHHHHcCCCCCCceEEEeCCccccCChhhhhhhhhccccCCCHHHHHHHHHHHHHhCCcEeeeeecC
Confidence            9999998889999999999988888999999999999999999999999999999999999999999999999997754

>PRK11609 nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information
>TIGR03614 RutB pyrimidine utilization protein B Back     alignment and domain information
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>PTZ00331 alpha/beta hydrolase; Provisional Back     alignment and domain information
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems Back     alignment and domain information
>PRK11440 putative hydrolase; Provisional Back     alignment and domain information
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes Back     alignment and domain information
>PLN02621 nicotinamidase Back     alignment and domain information
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>cd01012 YcaC_related YcaC related amidohydrolases; E Back     alignment and domain information
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms] Back     alignment and domain information
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
2wt9_A235 Acinetobacter Baumanii Nicotinamidase Pyrazinamidea 1e-04
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease Length = 235 Back     alignment and structure 
Iteration: 1

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 71/185 (38%), Gaps = 27/185 (14%)
Query: 20  ESLFLSGDVK-------TGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVF 72
           E+L+  G +K       + LV+VDV NGF     GNLA +  D  I  +   +     V 
Sbjct: 14  ENLYFQGHMKMNKQPQNSALVVVDVQNGFTP--GGNLAVADADTIIPTINQLAGCFENVV 71
Query: 73  CEKKWP-----VFA--------FLDTHYXXXXXXXXXXHCISGTDESNLVPELQWLENET 119
             + W       FA        F               HCI GT ++   P+L     + 
Sbjct: 72  LTQDWHPDNHISFAANHPGKQPFETIELDYGSQVLWPKHCIQGTHDAEFHPDLNIPTAQL 131
Query: 120 NVTLRRKDCIDGFLGSVEKDGSNV--FVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSA 177
            +       ID +   +E D + +     ++K   I  V V+GI TD CV     + L A
Sbjct: 132 IIRKGFHAHIDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCV---AWTALDA 188
Query: 178 RNRGF 182
             +GF
Sbjct: 189 VKQGF 193

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 1e-28
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 6e-27
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 4e-25
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 2e-24
3hu5_A204 Isochorismatase family protein; structural genomic 2e-22
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 8e-22
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 8e-22
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 5e-21
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 7e-21
3kl2_A226 Putative isochorismatase; structural genomics, unk 2e-19
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 3e-19
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 3e-18
3txy_A199 Isochorismatase family protein family; structural 5e-18
3oqp_A211 Putative isochorismatase; catalytic triad, structu 9e-18
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 2e-17
3lqy_A190 Putative isochorismatase hydrolase; structural gen 3e-17
1j2r_A199 Hypothetical isochorismatase family protein YECD; 7e-17
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 2e-16
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 6e-15
2a67_A167 Isochorismatase family protein; structural genomic 7e-15
3mcw_A198 Putative hydrolase; isochorismatase family, struct 8e-15
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Length = 182 Back     alignment and structure
 Score =  105 bits (265), Expect = 1e-28
 Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 27/187 (14%)

Query: 29  KTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYP 88
           K  LV+VD+VN F     G LA  +      + V  + ++   F     PV    D+HYP
Sbjct: 2   KPALVVVDMVNEFI---HGRLATPEAM----KTVGPARKVIETFRRSGLPVVYVNDSHYP 54

Query: 89  DVPE-PPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNW 147
           D PE   +  H + G D S ++ E++    +  +    K    GF G+            
Sbjct: 55  DDPEIRIWGRHSMKGDDGSEVIDEIRPSAGDYVLE---KHAYSGFYGT-------NLDMI 104

Query: 148 VKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAK 207
           +++N I  V+++G+  D+CV     +   A  R +      +IV     A    P     
Sbjct: 105 LRANGIDTVVLIGLDADICVR---HTAADALYRNY-----RIIVVEDAVAARIDPNW-KD 155

Query: 208 NIKDALP 214
                  
Sbjct: 156 YFTRVYG 162
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* Length = 211 Back     alignment and structure
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Length = 204 Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Length = 180 Back     alignment and structure
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Length = 204 Back     alignment and structure
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Length = 235 Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Length = 227 Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Length = 287 Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} Length = 226 Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Length = 233 Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Length = 207 Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} Length = 199 Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Length = 211 Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Length = 236 Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Length = 199 Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Length = 216 Back     alignment and structure
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Length = 264 Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Length = 167 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Length = 198 Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Length = 208 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 100.0
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 100.0
3lqy_A190 Putative isochorismatase hydrolase; structural gen 100.0
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 100.0
4h17_A197 Hydrolase, isochorismatase family; rossmann-like f 100.0
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 100.0
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 100.0
3kl2_A226 Putative isochorismatase; structural genomics, unk 100.0
3hu5_A204 Isochorismatase family protein; structural genomic 100.0
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 100.0
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 100.0
3tg2_A223 Vibriobactin-specific isochorismatase; hydrolase; 100.0
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 100.0
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 100.0
3mcw_A198 Putative hydrolase; isochorismatase family, struct 100.0
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 100.0
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 100.0
1j2r_A199 Hypothetical isochorismatase family protein YECD; 100.0
3oqp_A211 Putative isochorismatase; catalytic triad, structu 100.0
2a67_A167 Isochorismatase family protein; structural genomic 100.0
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 100.0
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 100.0
3txy_A199 Isochorismatase family protein family; structural 100.0
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 99.98
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 99.97
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 99.97
1x9g_A200 Putative MAR1; structural genomics, protein struct 99.97
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Back     alignment and structure
Probab=100.00  E-value=1.6e-40  Score=283.95  Aligned_cols=174  Identities=22%  Similarity=0.298  Sum_probs=156.1

Q ss_pred             CCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHH---hCCCcEEEEeecCCCCCCC-CCCCCCccCC
Q 025879           27 DVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFC---EKKWPVFAFLDTHYPDVPE-PPYPPHCISG  102 (247)
Q Consensus        27 ~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar---~~g~pVi~~~~~h~~~~~~-~~wp~~~~~g  102 (247)
                      ..++|||||||||+|++++ |.++.++    .+.+++++++|++.||   ..|+||||++++|.+.+++ ..||.||..|
T Consensus         5 m~~tALlvID~Q~~f~~~~-g~l~~~~----~~~ii~~i~~Ll~~ar~~~~~g~pVi~t~~~~~~~~~~~~~~~~~~~~g   79 (204)
T 3hb7_A            5 MAKHAILVIDMLNDFVGEK-APLRCPG----GETIIPDLQKIFEWVRGREGDDIHLVHIQEAHRKNDADFRVRPLHAVKG   79 (204)
T ss_dssp             SCCEEEEEECCBTTTSSTT-CTTCCGG----GGGGHHHHHHHHHHHHHSSSSSEEEEEEEECBCCCSCCSSSSCSSCBTT
T ss_pred             CCCeEEEEEcCchhhcCCC-CcccCcc----HHHHHHHHHHHHHHHHhhhhcCCEEEEEEccCCCCChhhhhcchhccCC
Confidence            3579999999999999874 6666443    3578999999999999   9999999999999877665 4799999999


Q ss_pred             CCCCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCC
Q 025879          103 TDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGF  182 (247)
Q Consensus       103 t~g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy  182 (247)
                      ++|++++++|.|.+++   .++.|++||+|++       |+|+.+|+++|+++|+|||++||+||.   +|+++|+++||
T Consensus        80 t~g~~i~~~l~~~~~~---~vi~K~~~saF~~-------t~L~~~L~~~gi~~lvi~G~~T~~CV~---~Ta~dA~~~Gy  146 (204)
T 3hb7_A           80 TWGSDFIPELYPQEDE---YIVQKRRHSGFAH-------TDLDLYLKEEGIDTVVLTGVWTNVCVR---STATDALANAY  146 (204)
T ss_dssp             STTTSBCGGGCCCTTC---EEEEESSSSTTTT-------SSHHHHHHHTTCCEEEEEEECTTTHHH---HHHHHHHHTTC
T ss_pred             CchhhcCHhhCCCCCC---EEEeCCccCCccC-------ccHHHHHHHCCCCEEEEEeecccHHHH---HHHHHHHHCCC
Confidence            9999999999998754   7999999999999       599999999999999999999999999   99999999999


Q ss_pred             CCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeecccc
Q 025879          183 LAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSF  241 (247)
Q Consensus       183 ~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~~  241 (247)
                           +|+|++|||++++.+.|                 +.+|..|. .|+.|++++++
T Consensus       147 -----~V~vv~Da~as~~~~~h-----------------~~al~~l~-~~a~v~tt~~v  182 (204)
T 3hb7_A          147 -----KVITLSDGTASKTEEMH-----------------EYGLNDLS-IFTKVMTVDQY  182 (204)
T ss_dssp             -----EEEEEEEEEECSSHHHH-----------------HHHHHHHH-HHSEEECHHHH
T ss_pred             -----EEEEechhccCCCHHHH-----------------HHHHHHHH-hCCEEeeHHHH
Confidence                 99999999999987654                 66787888 89999998876
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Back     alignment and structure
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440} Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Back     alignment and structure
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0 Back     alignment and structure
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Back     alignment and structure
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A* Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Back     alignment and structure
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Back     alignment and structure
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0 Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Back     alignment and structure
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 247
d1im5a_179 c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archa 3e-15
d1j2ra_188 c.33.1.3 (A:) Hypothetical protein YecD {Escherich 9e-15
d1nf9a_207 c.33.1.3 (A:) Phenazine biosynthesis protein PhzD 3e-14
d1nbaa_253 c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase 4e-14
d1yaca_204 c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} 2e-08
d1x9ga_192 c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donova 2e-08
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 179 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: Pyrazinamidase/nicotinamidase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 69.5 bits (169), Expect = 3e-15
 Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 44/214 (20%)

Query: 29  KTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYP 88
           +  L++VD+   F   G      + P  +  +++ +     R F EK   + A  D H  
Sbjct: 2   EEALIVVDMQRDFMPGG------ALPVPEGDKIIPKVNEYIRKFKEKGALIVATRDWHPE 55

Query: 89  DVPEP-----PYPPHCISGTDESNLVPEL-QWLENETNVTLRRKDCIDGFLGSVEKDGSN 142
           +         P+P HC+  T  +  V +L +     +  T   K+   GF G        
Sbjct: 56  NHISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIISKATEPDKEAYSGFEG-------T 108

Query: 143 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFP 202
                ++ N +K V + G+ T+ CV         A   GF     +V +           
Sbjct: 109 DLAKILRGNGVKRVYICGVATEYCVRATAL---DALKHGF-----EVYLLRDAVKGIK-- 158

Query: 203 VHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVV 236
                                 L   K RG K+V
Sbjct: 159 ---------------PEDEERALEEMKSRGIKIV 177
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Length = 188 Back     information, alignment and structure
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Length = 207 Back     information, alignment and structure
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Length = 253 Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d1nbaa_253 N-carbamoylsarcosine amidohydrolase {Arthrobacter 100.0
d1nf9a_207 Phenazine biosynthesis protein PhzD {Pseudomonas a 100.0
d1im5a_179 Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus 100.0
d1j2ra_188 Hypothetical protein YecD {Escherichia coli [TaxId 100.0
d1yaca_204 YcaC {Escherichia coli [TaxId: 562]} 99.97
d1x9ga_192 Ribonuclease MAR1 {Leishmania donovani [TaxId: 566 99.94
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: N-carbamoylsarcosine amidohydrolase
species: Arthrobacter sp. [TaxId: 1667]

Probab=100.00  E-value=1.5e-38  Score=278.38  Aligned_cols=179  Identities=16%  Similarity=0.175  Sum_probs=155.1

Q ss_pred             ccCCCCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCC------CC-
Q 025879           23 FLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEP------PY-   95 (247)
Q Consensus        23 ~~~~~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~~------~w-   95 (247)
                      .++...|+|||||||||+|++++ |.+..++    .+.+++++++|++.||++|+||||+++.|.+++...      .| 
T Consensus        32 ~~g~g~r~ALlvID~QndF~~p~-~~~~~~~----~~~iv~~i~~Li~aaR~~gipVI~~~~~~~~~~~~~~~~~~~~~~  106 (253)
T d1nbaa_          32 RIGYGNRPAVIHIDLANAWTQPG-HPFSCPG----METIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWY  106 (253)
T ss_dssp             CCCCCSSEEEEEESCBHHHHSSS-STTCCSC----HHHHHHHHHHHHHHHHHHTCCEEEEEECBSCCCTTSTTCSCGGGG
T ss_pred             CCCCCCcceEEEEcCcccccCCC-CcccccC----HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCccccccccccccc
Confidence            45556899999999999999875 5565443    357899999999999999999999999887654421      12 


Q ss_pred             ----CCCccCCCCCCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccch
Q 025879           96 ----PPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFV  171 (247)
Q Consensus        96 ----p~~~~~gt~g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~  171 (247)
                          ..++..|++|++++++|.|.++|   +++.|++||+|++       |+|+.+|+++||++|||||++||+||+   
T Consensus       107 ~~~~~~~~~~gt~ga~i~~~l~p~~~d---~vi~K~~~SaF~~-------T~L~~~Lr~~gI~~liv~Gv~Td~CV~---  173 (253)
T d1nbaa_         107 SKIPTETLPADSYWAQIDDRIAPADGE---VVIEKNRASAFPG-------TNLELFLTSNRIDTLIVTGATAAGCVR---  173 (253)
T ss_dssp             GTSCGGGCBTTSGGGSBCGGGCCCTTC---EEEEESSSSSSTT-------SSHHHHHHHTTCCEEEEEEECTTTHHH---
T ss_pred             cccCccccCCCCcccccccccCCCCCC---eeeeccccccccC-------ccHHHHHhhhccceEEEEeecccchHH---
Confidence                34677899999999999998764   8999999999999       599999999999999999999999999   


Q ss_pred             hhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeecccc
Q 025879          172 CSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSF  241 (247)
Q Consensus       172 ~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~~  241 (247)
                      +|+++|+++||     +|+|++|||++++.+.|                 +.+|..|...++.|++++++
T Consensus       174 ~Ta~dA~~~Gy-----~V~Vv~DA~as~~~e~h-----------------~~aL~~m~~~~g~V~~t~ei  221 (253)
T d1nbaa_         174 HTVEDAIAKGF-----RPIIPRETIGDRVPGVV-----------------QWNLYDIDNKFGDVESTDSV  221 (253)
T ss_dssp             HHHHHHHHHTC-----EEEEEGGGEECSSSSHH-----------------HHHHHHHHHHTCEEECHHHH
T ss_pred             HHHHHHHHCCC-----EEEEeccccCCCCHHHH-----------------HHHHHHHHhcCCEEecHHHH
Confidence            99999999999     99999999999988755                 67888899999999997765
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Back     information, alignment and structure