Citrus Sinensis ID: 025888

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MDPFRSNSLNFSTFFLMFYALYVFAYFVVFRGWPKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKKVI
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHEEHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mdpfrsnslnfsTFFLMFYALYVFAYFVVFRgwpkhraeaSSCFISLAHGTPAVLLSSHAAIrstqttfaspnttlQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITspcqnvwslssfwkadvpasarlhdllsapfytfysVVRGILGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWyrnlgysagkkvi
Flexible Loop (DISEMBL)
MDPFRSNSLNFSTFFLMFYALYVFAYFVVFRGWPKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQttfaspnttLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKKVI
Low Complexity Region (SEG)
MDPFRSNSLNFSTFFLMFYALYVFAYFVVFRGWPKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFEllillilAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKKVI
Disordered region (IsUnstruct)
********LNFSTFFLMFYALYVFAYFVVFRGWPKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYS******
Disordered Region (DISOPRED)
*******SLNFSTFFLMFYALYVFAYFVVFRGWPKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGY*******
Disordered Region (DISEMBL)
MDPFRSNSLNFSTFFLMFYALYVFAYFVVFRGWPKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKKVI
Disordered Region (DISPRO)
*****SNSLNFSTFFLMFYALYVFAYFVVFRGWPKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSA*****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPFRSNSLNFSTFFLMFYALYVFAYFVVFRGWPKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKKVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
224100063	248	predicted protein [Populus trichocarpa]	0.943	0.935	0.615	1e-73
255547880	249	transcription regulator, putative [Ricin	0.886	0.875	0.631	5e-73
225452179	252	PREDICTED: uncharacterized protein LOC10	0.922	0.900	0.583	1e-72
225425852	248	PREDICTED: uncharacterized protein LOC10	0.943	0.935	0.555	6e-69
449455958	244	PREDICTED: uncharacterized protein LOC10	0.959	0.967	0.535	4e-68
15230950	251	TRAM, LAG1 and CLN8 (TLC) lipid-sensing	0.955	0.936	0.550	1e-65
224060207	247	predicted protein [Populus trichocarpa]	0.955	0.951	0.525	2e-64
356558765	254	PREDICTED: uncharacterized protein LOC10	0.943	0.913	0.506	8e-64
15241364	572	DNA-binding storekeeper protein-like pro	0.886	0.381	0.542	9e-64
26450181	254	unknown protein [Arabidopsis thaliana]	0.902	0.874	0.533	1e-62

>gi|224100063|ref|XP_002311728.1| predicted protein [Populus trichocarpa] gi|222851548|gb|EEE89095.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/234 (61%), Positives = 180/234 (76%), Gaps = 2/234 (0%)

Query: 14  FFLMFYALYVFAYFVVFRGWP-KHRAEASSCFISLAHGTPAVLLSSHAAIRS-TQTTFAS 71
           FF  F ++Y   YFV FR W  KHR EASSC +SLAHG+PAV+++  A + S T  TFA 
Sbjct: 14  FFAGFISMYFLGYFVFFRNWELKHRKEASSCLMSLAHGSPAVIMAVRALLHSQTLGTFAH 73

Query: 72  PNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELL 131
           PN+ L++ VLEFSMAYFL DLLHY++F P + LFILHH ATLYVFVTCRY++HYGA  LL
Sbjct: 74  PNSALENTVLEFSMAYFLADLLHYMVFFPDETLFILHHLATLYVFVTCRYMIHYGAHGLL 133

Query: 132 ILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLW 191
           +LLILAE+TS CQNVWS++   KADVPA+ARLH+ L+ PFY  YS+VRGILGP+ ++K+ 
Sbjct: 134 LLLILAEVTSACQNVWSIAGSRKADVPAAARLHEFLAVPFYALYSLVRGILGPVCLFKMG 193

Query: 192 LFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKKV 245
           +FY++G A  LIP WAW+SWMVVI SAIL+S+LWV + W  W R   + A KKV
Sbjct: 194 VFYLNGGAHGLIPAWAWISWMVVIGSAILVSILWVSNLWAEWIRERSHRAQKKV 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547880|ref|XP_002514997.1| transcription regulator, putative [Ricinus communis] gi|223546048|gb|EEF47551.1| transcription regulator, putative [Ricinus communis]

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 139/220 (63%), Positives = 174/220 (79%), Gaps = 2/220 (0%)

Query: 28  VVFRGWPKH-RAEASSCFISLAHGTPAVLLSSHAAIRSTQT-TFASPNTTLQDIVLEFSM 85
           VVFR W K  R EASS F+SL HGTPAV+L+ HA +++  + TFASPN+   + VLEFSM
Sbjct: 29  VVFRNWDKELRKEASSSFMSLTHGTPAVILAIHALLQTHSSHTFASPNSYFHNRVLEFSM 88

Query: 86  AYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSPCQN 145
            YFLMDLLHY++F P  ILFILHH ATL+VF TCR++V YGA+E+L+LLILAE+TSPCQN
Sbjct: 89  GYFLMDLLHYLVFFPNGILFILHHLATLFVFATCRFLVCYGAYEILVLLILAEVTSPCQN 148

Query: 146 VWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPI 205
           +WS++   +AD P +A L+ +LS PF  FYSVVRGILGPLFV+K+ LFY SG A+ LIP 
Sbjct: 149 IWSIAGLRRADDPTAATLYQVLSTPFLVFYSVVRGILGPLFVFKMGLFYSSGEANGLIPG 208

Query: 206 WAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKKV 245
           WAW+SWMVVI++AIL+S+LWVL++WI W R     A KKV
Sbjct: 209 WAWISWMVVISTAILVSVLWVLNHWIYWLRERSRLARKKV 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452179|ref|XP_002265120.1| PREDICTED: uncharacterized protein LOC100267906 [Vitis vinifera] gi|296090259|emb|CBI40078.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/228 (58%), Positives = 178/228 (78%), Gaps = 1/228 (0%)

Query: 10  NFSTFFLMFYALYVFAYFVVFRGW-PKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTT 68
           N   FF +F A+Y+  YFVVFR W PK R EASSCFISLAHGTPAV+L+S A    +Q  
Sbjct: 12  NLPIFFFLFLAIYLVGYFVVFRNWSPKIRPEASSCFISLAHGTPAVVLASFALYADSQRG 71

Query: 69  FASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAF 128
           FA+PNT  Q +VL++S+AYFLMDL HY++F P DILFI HH ATL+VFVTCRYVV +G++
Sbjct: 72  FAAPNTAFQGLVLDYSIAYFLMDLCHYLVFFPSDILFIGHHLATLFVFVTCRYVVFHGSY 131

Query: 129 ELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVY 188
            +L+LL+LAE+TS  QN W+L+   K+DV  +A++++LLS PFY FYSVVRG +GPLF+Y
Sbjct: 132 AILVLLVLAEVTSAFQNTWTLAGALKSDVATAAKVYELLSPPFYAFYSVVRGFIGPLFMY 191

Query: 189 KLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRN 236
           K+ +F++SGAAD++IP W W+SW+ V+ SAI++S+LW+ + W   YR 
Sbjct: 192 KMGVFFLSGAADHVIPRWVWVSWIFVVLSAIMVSILWISNLWAELYRE 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425852|ref|XP_002265830.1| PREDICTED: uncharacterized protein LOC100252841 [Vitis vinifera]

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 130/234 (55%), Positives = 173/234 (73%), Gaps = 2/234 (0%)

Query: 14  FFLMFYALYVFAYFVVFRGW-PKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQ-TTFAS 71
           F ++F  +Y+F Y  VFR W  K R EASSC ISLAHG+PAV ++ HA + +    +FAS
Sbjct: 14  FLMVFLLVYIFGYVGVFRNWGQKQRLEASSCLISLAHGSPAVFMAIHAILDTENPRSFAS 73

Query: 72  PNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELL 131
            N+T Q+ VLEFS+AYFL+DLLHY++F P D+LFI HH  TLYVF+TCRY+V++GA  +L
Sbjct: 74  ANSTSQNFVLEFSIAYFLVDLLHYLLFFPNDVLFISHHLGTLYVFITCRYMVNHGALAIL 133

Query: 132 ILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLW 191
            LL+LAE TSPCQN+ +L++  K DVPA+++ ++ LS PF  FYS VRGILGPLF+Y++ 
Sbjct: 134 GLLVLAEATSPCQNIRTLANARKEDVPAASKFYEFLSPPFCAFYSTVRGILGPLFLYEIG 193

Query: 192 LFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKKV 245
            FY SG ADN+IP   W+SWM+V+ +AIL S+LWVL+ W+   R  G    KKV
Sbjct: 194 AFYSSGVADNVIPRLVWISWMIVVVAAILGSMLWVLNLWMELIRTRGQKLQKKV 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455958|ref|XP_004145717.1| PREDICTED: uncharacterized protein LOC101208807 [Cucumis sativus] gi|449530839|ref|XP_004172399.1| PREDICTED: uncharacterized protein LOC101230318 [Cucumis sativus]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 128/239 (53%), Positives = 176/239 (73%), Gaps = 3/239 (1%)

Query: 7   NSLNFSTFFLMFYALYVFAYFVVFRGW-PKHRAEASSCFISLAHGTPAVLLSSHAAIRST 65
           N L F  FF +F+ +YV AYF++FR W PK R EA+SC IS AHGTPAV L+S A +   
Sbjct: 6   NPLPF--FFSIFFTIYVIAYFLLFRNWSPKIRPEAASCAISFAHGTPAVFLASGAILSDA 63

Query: 66  QTTFASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHY 125
              FASPN+ LQ++VL++S+AYFLMDLLHY+IF P D+LFI HH  TL+VFVTCRY+V +
Sbjct: 64  GRGFASPNSDLQNLVLDYSIAYFLMDLLHYLIFFPSDLLFIAHHLVTLFVFVTCRYLVSH 123

Query: 126 GAFELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPL 185
           GA+ +L+LLILAE+TS CQNVW+L+   +ADV  + R++++LS PFY  YS+VRG +GP 
Sbjct: 124 GAYAILVLLILAEVTSFCQNVWTLARARRADVEFADRVYNILSPPFYVLYSIVRGFVGPY 183

Query: 186 FVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKK 244
           F+YK+  F+ +G A+ +IP W W+SW+ V+ +AI +S+LW+ + W+  YR       KK
Sbjct: 184 FLYKMGEFFFNGGAETVIPTWVWMSWIFVVAAAISVSILWITNLWVELYRERSSKLEKK 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230950|ref|NP_189224.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gi|49660177|gb|AAT68379.1| hypothetical protein At3g25950 [Arabidopsis thaliana] gi|50058971|gb|AAT69230.1| hypothetical protein At3g25950 [Arabidopsis thaliana] gi|332643573|gb|AEE77094.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/238 (55%), Positives = 172/238 (72%), Gaps = 3/238 (1%)

Query: 10  NFSTFFLMFYALYVFAYFVVFRGWPKHRAEASSCFISLAHGTPAVLLSSHAAI---RSTQ 66
            F +F L+F A+Y   YF+VFR W +     +SC +SL HGTPAV+++SHA +   R+  
Sbjct: 14  TFPSFLLLFLAVYTIGYFLVFRTWKQSSHLGASCLMSLFHGTPAVIMASHALLTTPRADV 73

Query: 67  TTFASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYG 126
            +FASPNT ++  VL+FSMAYF +DLLHY+IF P D +FILHH ATLYVF TCR+ V +G
Sbjct: 74  HSFASPNTAVESNVLDFSMAYFTVDLLHYLIFLPNDFIFILHHIATLYVFATCRFAVGHG 133

Query: 127 AFELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLF 186
           A  LL+LLILAE TS CQNVW+++ + K DV  + R+ +LLS PFY FY+VVRG+ GP+ 
Sbjct: 134 AHGLLLLLILAEATSACQNVWTITGYRKNDVALARRVRELLSPPFYLFYTVVRGLAGPVV 193

Query: 187 VYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKK 244
           +Y +  FY SGAAD ++P WAWLSW+VVI  AIL+S+LWVL NW+ W+R    S   K
Sbjct: 194 LYDMATFYGSGAADGVVPRWAWLSWLVVIGFAILVSILWVLRNWLDWFRENNSSKKYK 251

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060207|ref|XP_002300085.1| predicted protein [Populus trichocarpa] gi|222847343|gb|EEE84890.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 168/236 (71%), Gaps = 1/236 (0%)

Query: 10  NFSTFFLMFYALYVFAYFVVFRGW-PKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTT 68
           +    F  F  +Y+ A+F+VFR W PK R EA+SC IS+ HGTPAV L++HA   +    
Sbjct: 10  DLPILFAFFLTIYLAAHFLVFRNWSPKIRPEAASCLISIFHGTPAVFLATHALFTNPNRG 69

Query: 69  FASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAF 128
           F+S NT  +  VL++S++YFLMDL+HY+IF+P DILFI HH ATL+VFVTCRY+V  GA+
Sbjct: 70  FSSLNTKTEASVLDYSISYFLMDLIHYLIFSPSDILFIGHHLATLFVFVTCRYLVARGAY 129

Query: 129 ELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVY 188
            +L+LLILAE+TS CQN W+L++  + DV  +A+++D LS PFY FYSVVRGILGP FVY
Sbjct: 130 AVLMLLILAEVTSACQNAWTLANARRIDVEFAAKVYDFLSLPFYAFYSVVRGILGPYFVY 189

Query: 189 KLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKK 244
           ++  F+ISG    +IP W W+SW+ V+  AI +S+LWV + W+  YR       KK
Sbjct: 190 QMGAFFISGVDGGIIPKWIWVSWLFVVVIAISVSILWVTNLWVQLYRERSAKLEKK 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558765|ref|XP_003547673.1| PREDICTED: uncharacterized protein LOC100790316 [Glycine max]

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 118/233 (50%), Positives = 165/233 (70%), Gaps = 1/233 (0%)

Query: 14  FFLMFYALYVFAYFVVFRGWP-KHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASP 72
           FFLMF ++Y+  YF++FR    K R E SSC ISL HGTPA +L S A +  ++  FA+P
Sbjct: 21  FFLMFLSIYLIGYFLIFRKQTLKIRPEFSSCLISLFHGTPAAILGSAAILSDSRQGFAAP 80

Query: 73  NTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLI 132
           NT+ Q +VL++S AYFL DLLHY+ F P+D+LFI HH ATL+V +TCRY V +GAF +L+
Sbjct: 81  NTSFQKLVLDYSAAYFLTDLLHYVFFYPKDVLFIAHHVATLFVVLTCRYAVSHGAFAVLV 140

Query: 133 LLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWL 192
           LL+LAEITS CQN W+L+   K     + R+H  LS PFY  YSVVRG +GP FVY++ +
Sbjct: 141 LLVLAEITSACQNAWTLTGARKDQDALARRVHHALSPPFYAAYSVVRGFVGPYFVYRMIV 200

Query: 193 FYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKKV 245
           FY+SG A  L+P+WAW SW++V+  AI +S++W+ + W+ ++R       +K+
Sbjct: 201 FYVSGGARGLVPVWAWASWVLVVVMAIGVSIMWISNLWVQFFRERRGKLEEKI 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241364|ref|NP_196932.1| DNA-binding storekeeper protein-like protein [Arabidopsis thaliana] gi|7573453|emb|CAB87767.1| putative protein [Arabidopsis thaliana] gi|332004629|gb|AED92012.1| DNA-binding storekeeper protein-like protein [Arabidopsis thaliana]

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 120/221 (54%), Positives = 161/221 (72%), Gaps = 3/221 (1%)

Query: 14  FFLMFYALYVFAYFVVFRGW-PKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASP 72
           FF MF  +Y+ AYF+VFR W P+ R EASSC IS+ HG+PAV L++ A   S++ +FAS 
Sbjct: 334 FFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFLATRAVFSSSERSFASA 393

Query: 73  NTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLI 132
           NT  Q+ VL+FS+AYFL DL HYI+F P D+LFI HH ATL+VF+TCR++V +GA  +L 
Sbjct: 394 NTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFLVFHGACAILG 453

Query: 133 LLILAEITSPCQNVWSLSSFWKADVPA--SARLHDLLSAPFYTFYSVVRGILGPLFVYKL 190
           LLILAE+TS CQN W+L+   K D  +  + +++DLLS PFY FYS+VRG+LGPLF  K+
Sbjct: 454 LLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYAFYSIVRGVLGPLFFGKM 513

Query: 191 WLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWI 231
             FY  G A  +IP W W+SW +V+  AI +S+LW+ + WI
Sbjct: 514 VAFYARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWI 554

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26450181|dbj|BAC42209.1| unknown protein [Arabidopsis thaliana]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 162/225 (72%), Gaps = 3/225 (1%)

Query: 10  NFSTFFLMFYALYVFAYFVVFRGW-PKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTT 68
           +   FF MF  +Y+ AYF+VFR W P+ R EASSC IS+ HG+PAV L++ A   S++ +
Sbjct: 12  DLPIFFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFLATRAVFSSSERS 71

Query: 69  FASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAF 128
           FAS NT  Q+ VL+FS+AYFL DL HYI+F P D+LFI HH ATL+VF+TCR++V +GA 
Sbjct: 72  FASANTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFLVFHGAC 131

Query: 129 ELLILLILAEITSPCQNVWSLSSFWKADVPA--SARLHDLLSAPFYTFYSVVRGILGPLF 186
            +L LLILAE+TS CQN W+L+   K D  +  + +++DLLS PFY FYS+VRG+LGPLF
Sbjct: 132 AILGLLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYAFYSIVRGVLGPLF 191

Query: 187 VYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWI 231
             K+  FY  G A  +IP W W+SW +V+  AI +S+LW+ + WI
Sbjct: 192 FGKMVAFYARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWI 236

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2092075	251	AT3G25950 "AT3G25950" [Arabido	0.914	0.896	0.539	1.7e-66
TAIR|locus:2145688	572	AT5G14280 [Arabidopsis thalian	0.886	0.381	0.520	1.3e-61
TAIR|locus:2086508	249	AT3G27270 "AT3G27270" [Arabido	0.991	0.979	0.421	2.4e-51
UNIPROTKB|E1C635	242	TMEM136 "Uncharacterized prote	0.487	0.495	0.323	5.9e-08
UNIPROTKB|F1NUQ1	245	TMEM136 "Uncharacterized prote	0.487	0.489	0.323	6.3e-08
UNIPROTKB|F1P1X2	148	TMEM136 "Uncharacterized prote	0.333	0.554	0.344	2e-06
UNIPROTKB|E2RSK2	263	TMEM56 "Uncharacterized protei	0.841	0.787	0.25	7.4e-05
UNIPROTKB|E2QSX2	245	TMEM136 "Uncharacterized prote	0.495	0.497	0.289	0.00011
UNIPROTKB|F6UPA7	266	TMEM136 "Uncharacterized prote	0.495	0.458	0.289	0.00013
UNIPROTKB|Q0VD42	245	TMEM136 "Transmembrane protein	0.495	0.497	0.281	0.00018

TAIR|locus:2092075 AT3G25950 "AT3G25950" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 123/228 (53%), Positives = 163/228 (71%)

Query:    11 FSTFFLMFYALYVFAYFVVFRGWPKHRAEASSCFISLAHGTPAVLLSSHAAI---RSTQT 67
             F +F L+F A+Y   YF+VFR W +     +SC +SL HGTPAV+++SHA +   R+   
Sbjct:    15 FPSFLLLFLAVYTIGYFLVFRTWKQSSHLGASCLMSLFHGTPAVIMASHALLTTPRADVH 74

Query:    68 TFASPNTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGA 127
             +FASPNT ++  VL+FSMAYF +DLLHY+IF P D +FILHH ATLYVF TCR+ V +GA
Sbjct:    75 SFASPNTAVESNVLDFSMAYFTVDLLHYLIFLPNDFIFILHHIATLYVFATCRFAVGHGA 134

Query:   128 FEXXXXXXXAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFV 187
                      AE TS CQNVW+++ + K DV  + R+ +LLS PFY FY+VVRG+ GP+ +
Sbjct:   135 HGLLLLLILAEATSACQNVWTITGYRKNDVALARRVRELLSPPFYLFYTVVRGLAGPVVL 194

Query:   188 YKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYR 235
             Y +  FY SGAAD ++P WAWLSW+VVI  AIL+S+LWVL NW+ W+R
Sbjct:   195 YDMATFYGSGAADGVVPRWAWLSWLVVIGFAILVSILWVLRNWLDWFR 242

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2145688 AT5G14280 [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 115/221 (52%), Positives = 155/221 (70%)

Query:    14 FFLMFYALYVFAYFVVFRGW-PKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASP 72
             FF MF  +Y+ AYF+VFR W P+ R EASSC IS+ HG+PAV L++ A   S++ +FAS 
Sbjct:   334 FFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFLATRAVFSSSERSFASA 393

Query:    73 NTTLQDIVLEFSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFEXXX 132
             NT  Q+ VL+FS+AYFL DL HYI+F P D+LFI HH ATL+VF+TCR++V +GA     
Sbjct:   394 NTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFLVFHGACAILG 453

Query:   133 XXXXAEITSPCQNVWSLSSFWKADVPA--SARLHDLLSAPFYTFYSVVRGILGPLFVYKL 190
                 AE+TS CQN W+L+   K D  +  + +++DLLS PFY FYS+VRG+LGPLF  K+
Sbjct:   454 LLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYAFYSIVRGVLGPLFFGKM 513

Query:   191 WLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWI 231
               FY  G A  +IP W W+SW +V+  AI +S+LW+ + WI
Sbjct:   514 VAFYARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWI 554

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2086508 AT3G27270 "AT3G27270" [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 105/249 (42%), Positives = 152/249 (61%)

Query:     1 MDPFRSNSLNFSTFFLMFYALYVFAYFVVFRGW-PKHRAEASSCFISLAHGTPAVLLSSH 59
             M+P  + S +   FF +F  +Y+  Y  +F+ W P+ R  ASSC ISL HG  AV+L+++
Sbjct:     1 MEPI-TYSKDLPLFFSIFIFVYLLGYLFIFKKWTPETRPLASSCLISLLHGVSAVVLATN 59

Query:    60 AAIRSTQTTFASPNTTLQDIVLEFSMAYFLMDLLHYIIF-TPR--DILFILHHAATLYVF 116
             A +      F+S NT  Q+ +L+FS AYFL DL+H  +F +P   D LF  HH A L+VF
Sbjct:    60 ALLSDPNRGFSSVNTQSQNSILDFSSAYFLADLVHLAVFPSPAGGDSLFAAHHLAVLFVF 119

Query:   117 VTCRYVVHYGAFEXXXXXXXAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYS 176
             +TCRY+V +GA         AE TS CQN W+L+     D P +  LH  ++ PFY  YS
Sbjct:   120 LTCRYMVAHGACALLALLVVAEATSACQNTWTLADARGKDAPLAVSLHRFVTVPFYASYS 179

Query:   177 VVRGILGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRN 236
             V R +L PL + K+  FY+SG AD++IP W W+SW VVI +A+ +S+LW+ + W+ +++ 
Sbjct:   180 VCRCVLAPLLIVKMTWFYVSGGADDVIPRWVWVSWTVVIVTAVTVSILWIWNLWVLFFQE 239

Query:   237 LGYSAGKKV 245
                   KKV
Sbjct:   240 RYSKFTKKV 248

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C635 TMEM136 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 42/130 (32%), Positives = 61/130 (46%)

Query:    27 FVVFRGWPKHRAEASSC-FISLAHGTPAVLLSSHAAIRSTQTTFA---SPNTTLQDIVLE 82
             +  F  W +HR+   +C  ++L HG  A  LS + A+       +   SPNT LQ  VL 
Sbjct:    19 YAAFCLWNRHRSPEWNCRLVTLLHGATATCLSGYIALWDGPWPLSHAGSPNTALQVHVLS 78

Query:    83 FSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYG--AFEXXXXXXXAEIT 140
              ++ YF+ DLL  + F     L +LHH  ++   V    V+  G  A E       +EIT
Sbjct:    79 LTLGYFIFDLLWCLYFQTEGDLMLLHHTLSICGMVL---VLGLGKSATEVNAVVFVSEIT 135

Query:   141 SPC-QNVWSL 149
             +P  Q  W L
Sbjct:   136 NPLLQTRWFL 145

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NUQ1 TMEM136 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 42/130 (32%), Positives = 61/130 (46%)

Query:    27 FVVFRGWPKHRAEASSC-FISLAHGTPAVLLSSHAAIRSTQTTFA---SPNTTLQDIVLE 82
             +  F  W +HR+   +C  ++L HG  A  LS + A+       +   SPNT LQ  VL 
Sbjct:    20 YAAFCLWNRHRSPEWNCRLVTLLHGATATCLSGYIALWDGPWPLSHAGSPNTALQVHVLS 79

Query:    83 FSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYG--AFEXXXXXXXAEIT 140
              ++ YF+ DLL  + F     L +LHH  ++   V    V+  G  A E       +EIT
Sbjct:    80 LTLGYFIFDLLWCLYFQTEGDLMLLHHTLSICGMVL---VLGLGKSATEVNAVVFVSEIT 136

Query:   141 SPC-QNVWSL 149
             +P  Q  W L
Sbjct:   137 NPLLQTRWFL 146

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P1X2 TMEM136 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 113 (44.8 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 30/87 (34%), Positives = 44/87 (50%)

Query:    27 FVVFRGWPKHRAEASSC-FISLAHGTPAVLLSSHAAIRSTQTTFA---SPNTTLQDIVLE 82
             +  F  W +HR+   +C  ++L HG  A  LS + A+       +   SPNT LQ  VL 
Sbjct:    41 YAAFCLWNRHRSPEWNCRLVTLLHGATATCLSGYIALWDGPWPLSHAGSPNTALQVHVLS 100

Query:    83 FSMAYFLMDLLHYIIF-TPRDILFILH 108
              ++ YF+ DLL  + F T R +L   H
Sbjct:   101 LTLGYFIFDLLWCLYFQTERKMLKKYH 127

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RSK2 TMEM56 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 117 (46.2 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 58/232 (25%), Positives = 97/232 (41%)

Query:    10 NFSTFFLMFYALYVFAYFVVFRGWP----KHRAEASSCFISLAHGTPAVLLSSHAAIRST 65
             +F TF L+FY +  +    V  G+     + + E +S  +S  H     L   +      
Sbjct:    15 SFFTFQLLFYFISFWFSAKVSPGFVSLSFEKKIEWNSRVVSTCHSLVVGLFGLYLFFFD- 73

Query:    66 QTTFASP---NTTLQDIVLEFSMAYFLMDLLHYIIFTP--RDILFILHHAATLYVFVTCR 120
             + T A P   +++L  + +  +  Y + DLL  I++     D  FI+HH A LY +    
Sbjct:    74 EATMADPLWGDSSLVKVNISIATGYLISDLLILILYWKVIGDKYFIIHHCAALYAYY--- 130

Query:   121 YVVHYGAFEXXXXXXX-AEITSPCQNV-WSLSS-----FWKADVPASARLHDLLS----A 169
             YV+ YG           AE++SP  N  W   +     F KA+V     +  +      A
Sbjct:   131 YVLRYGVLASIGNFRLLAELSSPFVNQRWFFEALKYPKFSKANVINGILMTVVFFIVRIA 190

Query:   170 PFYTFYSVVRGILGPLFVYKL-WLFYISGAADNLIPIWAWLSWMVVITSAIL 220
             P   FYS +  +LG     +L +L   S  +  ++     + WM+ IT   +
Sbjct:   191 PIPPFYSYMYSVLGTEAYIRLGFLIQCSWISTCVVLDIMNVMWMIKITKGCI 242

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QSX2 TMEM136 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
 Identities = 37/128 (28%), Positives = 56/128 (43%)

Query:    27 FVVFRGWPKHRAEASSC-FISLAHGTPAVLLSSHAAIRSTQTTFA---SPNTTLQDIVLE 82
             ++ F    KHR+   SC  ++  HG  ++ LS++         F    SPNT LQ  VL 
Sbjct:    20 YISFCRLNKHRSYEWSCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLC 79

Query:    83 FSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFEXXXXXXXAEITSP 142
              ++ YF+ DL   I F     L + HH  ++   +    +   G  E       +EIT+P
Sbjct:    80 LTLGYFIFDLGWCIYFQSEGALMLAHHTLSILGIIMALVLGESGT-EVNAVLFGSEITNP 138

Query:   143 C-QNVWSL 149
               Q  W L
Sbjct:   139 LLQMRWFL 146

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F6UPA7 TMEM136 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 115 (45.5 bits), Expect = 0.00013, P = 0.00013
 Identities = 37/128 (28%), Positives = 56/128 (43%)

Query:    27 FVVFRGWPKHRAEASSC-FISLAHGTPAVLLSSHAAIRSTQTTFA---SPNTTLQDIVLE 82
             ++ F    KHR+   SC  ++  HG  ++ LS++         F    SPNT LQ  VL 
Sbjct:    41 YISFCRLNKHRSYEWSCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLC 100

Query:    83 FSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFEXXXXXXXAEITSP 142
              ++ YF+ DL   I F     L + HH  ++   +    +   G  E       +EIT+P
Sbjct:   101 LTLGYFIFDLGWCIYFQSEGALMLAHHTLSILGIIMALVLGESGT-EVNAVLFGSEITNP 159

Query:   143 C-QNVWSL 149
               Q  W L
Sbjct:   160 LLQMRWFL 167

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q0VD42 TMEM136 "Transmembrane protein 136" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
 Identities = 36/128 (28%), Positives = 56/128 (43%)

Query:    27 FVVFRGWPKHRAEASSC-FISLAHGTPAVLLSSHAAIRSTQTTFA---SPNTTLQDIVLE 82
             +V F    KHR+   +C  ++  HG  ++ LS++         F    SPNT LQ  VL 
Sbjct:    20 YVSFCRLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLC 79

Query:    83 FSMAYFLMDLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFEXXXXXXXAEITSP 142
              ++ YF+ DL   I F     L + HH  ++   +    +   G  E       +EIT+P
Sbjct:    80 LTLGYFIFDLGWCIYFRSEGPLMLAHHTLSILGIIVALVLGESGT-EVNAVLFGSEITNP 138

Query:   143 CQNV-WSL 149
                + W L
Sbjct:   139 LLQIRWFL 146

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
smart00724	205	smart00724, TLC, TRAM, LAG1 and CLN8 homology doma	6e-15
pfam03798	198	pfam03798, TRAM_LAG1_CLN8, TLC domain	7e-07

>gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains

 Score = 70.8 bits (174), Expect = 6e-15
 Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 13/196 (6%)

Query: 37  RAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASPNTT---LQDIVLEFSMAYFLMDLL 93
             E+S+  +S  H   A L + ++    +      P      L      FS+ YF+ DL+
Sbjct: 3   FNESSNRLVSYLHSVIAGLYALYSEPWLSDPKSLYPIQGMSPLAKFYYLFSLGYFIHDLV 62

Query: 94  HYIIFTP----RDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSPCQNVWSL 149
             ++F           ++HH ATL +      +        L+LL+L E++ P  ++  L
Sbjct: 63  ALLLFQDLKRKDFKEMLVHHIATLLLISLSYVLNFTRLG--LLLLLLHELSDPFLHLRKL 120

Query: 150 SSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPIWAWL 209
            ++        + L+D+    F   + V R IL P  +  + + Y    +  L P   +L
Sbjct: 121 LNYAGRK---KSLLYDVNFVLFAVVFFVFRLILFPFLILTVTVHYAQAESG-LFPPLLYL 176

Query: 210 SWMVVITSAILLSLLW 225
            +++++    LL++ W
Sbjct: 177 LFLLLLLCLQLLNIYW 192

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains. Length = 205

>gnl|CDD|217735 pfam03798, TRAM_LAG1_CLN8, TLC domain

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 9/144 (6%)

Query: 83  FSMAYFLMDLLHYIIF-TPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITS 141
             + YFL DLL  + +   R    +LHH  TL +     Y  ++     L++L+L E++ 
Sbjct: 57  IQLGYFLHDLLVLLFYEKRRKWEMLLHHIITLLLISFS-YFYNFTRV-GLLVLLLHELSD 114

Query: 142 PCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADN 201
           P  ++    ++         +  D+L   F   + +VR +LGP  +    L         
Sbjct: 115 PFLHLRKFLNYLGKK-----KSCDVLFVLFLVSFFLVRLVLGPFLILLSILDEARLDIPG 169

Query: 202 LIPIWAWLSWMVVITSAILLSLLW 225
             P   +  ++ ++    LL++ W
Sbjct: 170 -GPFNLYYIFLALLLVLQLLNIYW 192

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
smart00724	205	TLC TRAM, LAG1 and CLN8 homology domains. Protein	99.97
KOG4561	281	consensus Uncharacterized conserved protein, conta	99.97
PF03798	198	TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TL	99.96
KOG4474	253	consensus Uncharacterized conserved protein [Funct	99.91
KOG1607	318	consensus Protein transporter of the TRAM (translo	97.8
COG5058	395	LAG1 Protein transporter of the TRAM (translocatin	96.76
PF11044	49	TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 tran	81.53

>smart00724 TLC TRAM, LAG1 and CLN8 homology domains

Probab=99.97  E-value=3.9e-30  Score=218.41  Aligned_cols=196  Identities=23%  Similarity=0.308  Sum_probs=156.8

Q ss_pred             ccccCchhHHHHHhhHHHHHHHHHHHHHh--cCC-cccCCCCChhhHHHHHHHHHHHHHHHHHHHHhc----cCchHHHH
Q 025888           35 KHRAEASSCFISLAHGTPAVLLSSHAAIR--STQ-TTFASPNTTLQDIVLEFSMAYFLMDLLHYIIFT----PRDILFIL  107 (246)
Q Consensus        35 ~~~~ew~nr~vS~~Ha~v~~~la~~~~~~--~~~-~~~~~~~t~~~~~~l~~S~GYFi~Dl~~~l~~~----~~~~~~l~  107 (246)
                      +|+.||+||++|.+||++++..+++....  |+. .....++|+.++...++++|||++|+..|+.+.    .++++|++
T Consensus         1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~~~~~   80 (205)
T smart00724        1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPKSLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFKEMLV   80 (205)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence            58899999999999999999999887763  331 112368999999999999999999999999653    23899999


Q ss_pred             HHHHHHHHHhhhhhhccchhHHHHHHHHHHHhchH-hHHHHHHHHccCCCCchhhhHHHhhhHHHHHHHHHhhhchhhhh
Q 025888          108 HHAATLYVFVTCRYVVHYGAFELLILLILAEITSP-CQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLF  186 (246)
Q Consensus       108 HH~~~i~~~~~~~~~~~~~~~~~~~~~ll~E~StP-~~~~w~L~~~~~~~s~~~~~~y~~n~l~f~~~F~v~Ri~~~p~~  186 (246)
                      ||++++.++..+. ..+......+ .+++.|+||| ++.||.+...++++++    ++..|+.+|+++|+++|++.+|+.
T Consensus        81 HHv~~~~~~~~~~-~~~~~~~~~~-~~~l~E~s~~fl~~~~~l~~~~~~~~~----~~~~~~~~f~~~f~~~R~~~~p~~  154 (205)
T smart00724       81 HHIATLLLISLSY-VLNFTRLGLL-LLLLHELSDPFLHLRKLLNYAGRKKSL----LYDVNFVLFAVVFFVFRLILFPFL  154 (205)
T ss_pred             HHHHHHHHHHHHH-HhhhhHHHHH-HHHHHhhhHHHHHHHHHHHHhccccch----hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887533 3444444444 3589999999 6668888888887554    889999999999999999999999


Q ss_pred             HHhhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025888          187 VYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNL  237 (246)
Q Consensus       187 ~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ni~Wf~ki~~g~~k~~  237 (246)
                      .+........ ...+..|.+....+...+....+||++|+.+|.|+..|..
T Consensus       155 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~  204 (205)
T smart00724      155 ILTVTVHYAQ-AESGLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL  204 (205)
T ss_pred             HHHHHhhhhh-hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9888754332 1222356667777777777788999999999999999864

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.

>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=99.97  E-value=1e-32  Score=242.62  Aligned_cols=200  Identities=19%  Similarity=0.238  Sum_probs=150.3

Q ss_pred             hcC-CccccCch-hHHHHHhhHHHHHHHHHHHHHhcCCcccC--CCCChhhHHHHHHH--HHHHHHHHHHHHHh--ccCc
Q 025888           31 RGW-PKHRAEAS-SCFISLAHGTPAVLLSSHAAIRSTQTTFA--SPNTTLQDIVLEFS--MAYFLMDLLHYIIF--TPRD  102 (246)
Q Consensus        31 ~~l-~~~~~ew~-nr~vS~~Ha~v~~~la~~~~~~~~~~~~~--~~~t~~~~~~l~~S--~GYFi~Dl~~~l~~--~~~~  102 (246)
                      +++ +++|+||| +|+||++|+++++  ++|.++.+|....|  ...+......-.-+  .|||+.|+.++.++  ..+|
T Consensus        61 ~~l~~k~~i~wn~~~~Vs~~hslv~~--s~y~lf~~~~f~yD~~~~~~~~~~~~~~~~~g~gy~i~dl~~i~~~~~~~~~  138 (281)
T KOG4561|consen   61 RSLDKKLKIEWNCVRVVSTVHSLVSS--SLYFLFGTPYFHYDKATGYSVVWSKHRDTSVGIGYFIPDLTWIIVRYFVLGG  138 (281)
T ss_pred             hhhcCcEEEEEecCceeeeehHhhhc--ccceeecCcccchhhhhccceeecceeeccccceEecccceeEEEEeeeecC
Confidence            568 99999999 9999999999998  77877765543223  11111111111111  56999999755443  5799


Q ss_pred             hHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHhchH-hHHHHHHHHccCCCCchhhhHHHhhhHHHHHHHHHhhhc
Q 025888          103 ILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSP-CQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGI  181 (246)
Q Consensus       103 ~~~l~HH~~~i~~~~~~~~~~~~~~~~~~~~~ll~E~StP-~~~~w~L~~~~~~~s~~~~~~y~~n~l~f~~~F~v~Ri~  181 (246)
                      .+|++||+++.+.. .|....++|.+.. ...+++|+||| +|.||+++++++++|.    +|.+||++++++|+++||+
T Consensus       139 ~~fviHh~~s~~~v-~~~~~~~~g~y~~-~~~L~~ElSTPFvnlrw~L~~~~~k~Sl----~~~vNG~lm~~~F~v~RIl  212 (281)
T KOG4561|consen  139 IEFVIHHIASLVFV-GCLLRRGVGQYYA-GTFLMAELSTPFVNLRWFLDKAGQKKSL----FYKVNGLLLLVVFFVARIL  212 (281)
T ss_pred             eeEEeeHHHHhhhh-eeeEecCccceee-eeeheeecCCceeeHHHHHHHcCcccch----HHHhhhHHHHHHHHHHHHH
Confidence            99999999993332 2455455555543 44699999999 9999999999999865    8999999999999999999


Q ss_pred             hhhhhHHhhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 025888          182 LGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGY  239 (246)
Q Consensus       182 ~~p~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ni~Wf~ki~~g~~k~~~~  239 (246)
                      ..|++.++++..+.. ....++|......+.......+++|++||+||.||..|-.++
T Consensus       213 l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~  269 (281)
T KOG4561|consen  213 LWPYMGWHYYWRYQG-LVLNQVPPFLPLFLLGLNALLLVLNLYWFSKMVRGALKVLKK  269 (281)
T ss_pred             HHHHHHHHHHHHHhh-hhhhhhchhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence            999999988855543 444567766777777667777889999999999999975443

>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices

Probab=99.96  E-value=5.7e-28  Score=202.46  Aligned_cols=186  Identities=20%  Similarity=0.334  Sum_probs=138.8

Q ss_pred             CchhHHHHHhhHHHHHHHHHHHHHhcCCc-----ccC-CCCChhhHHHHHHHHHHHHHHHHHHHHhc-cC-c-hHHHHHH
Q 025888           39 EASSCFISLAHGTPAVLLSSHAAIRSTQT-----TFA-SPNTTLQDIVLEFSMAYFLMDLLHYIIFT-PR-D-ILFILHH  109 (246)
Q Consensus        39 ew~nr~vS~~Ha~v~~~la~~~~~~~~~~-----~~~-~~~t~~~~~~l~~S~GYFi~Dl~~~l~~~-~~-~-~~~l~HH  109 (246)
                      ||+||++|++|+++++.+|.+++..+|+.     +.. .++++.++...++++|||++|+..|+.+. .. | +++++||
T Consensus         1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~HH   80 (198)
T PF03798_consen    1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLHH   80 (198)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHH
Confidence            79999999999999999999999997721     112 33455777899999999999999999964 22 3 9999999


Q ss_pred             HHHHHHHhhhhhhccchhHHHHHHHHHHHhchH-hHHHHHHHHccCC--CCchhhhHHHhhhHHHHHHHHHhhhchhhhh
Q 025888          110 AATLYVFVTCRYVVHYGAFELLILLILAEITSP-CQNVWSLSSFWKA--DVPASARLHDLLSAPFYTFYSVVRGILGPLF  186 (246)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~~~~~~~~ll~E~StP-~~~~w~L~~~~~~--~s~~~~~~y~~n~l~f~~~F~v~Ri~~~p~~  186 (246)
                      ++++.++.. .+..+.+... ....++.|+||| ++.||.+...+++  ++    +.+..|+.+|.++|+++|++.+|+.
T Consensus        81 ~~~l~~~~~-~~~~~~~~~~-~~~~ll~E~st~fl~~r~~l~~~~~~~~~~----~~~~~~~~~f~~~f~~~Ri~~~~~~  154 (198)
T PF03798_consen   81 VVTLVLFYF-SYFYNFGRFG-IVVFLLHEISTPFLNLRWFLKYLGGYSKKS----SLYRFNGVLFAVTFFVFRIVLFPYL  154 (198)
T ss_pred             HHHHHHHHH-hhHHHHhhHH-HHHHHHHhcccHHHHHHHHHHHHhccccch----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998864 3334444443 333589999999 6678998888443  33    3789999999999999999999998


Q ss_pred             HHhhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025888          187 VYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWI  231 (246)
Q Consensus       187 ~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ni~Wf~ki~~  231 (246)
                      .++....... ......+.+.............++|++|++||+|
T Consensus       155 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r  198 (198)
T PF03798_consen  155 IYWVYWDVWP-LPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR  198 (198)
T ss_pred             HHHHHHHhcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8777643221 1112222334444444555567899999999987

Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane

>KOG4474 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.91  E-value=1.9e-23  Score=180.52  Aligned_cols=187  Identities=14%  Similarity=0.131  Sum_probs=144.4

Q ss_pred             CccccCchhHHHHHhhHHHHHHHHHHHHHhcCCcccC---CCCChhhHHHHHHHHHHHHHHHHHHHHhc--cCchHHHHH
Q 025888           34 PKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFA---SPNTTLQDIVLEFSMAYFLMDLLHYIIFT--PRDILFILH  108 (246)
Q Consensus        34 ~~~~~ew~nr~vS~~Ha~v~~~la~~~~~~~~~~~~~---~~~t~~~~~~l~~S~GYFi~Dl~~~l~~~--~~~~~~l~H  108 (246)
                      +-||.++.|+.||++||++++.+|.+++..+|+. .+   ...+..+..++++|+|||+||+.+|..++  ...++.+.|
T Consensus        40 ~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~-~~~~~~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~s~e~LvH  118 (253)
T KOG4474|consen   40 VYQKKRFSNLTVSLLHSTISGLWALLSLLYDPEM-VDDPITYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSELSWEYLVH  118 (253)
T ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHHHhCccc-ccCHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            4458999999999999999999999999999864 33   45667888999999999999999999986  678999999


Q ss_pred             HHHHHHHHhhhhhhccchhHHHHHHHHHHHhchHhHHHHHHHHc-cCCCCchhhhHHHhhhHHHHHHHHHhhhchhhhhH
Q 025888          109 HAATLYVFVTCRYVVHYGAFELLILLILAEITSPCQNVWSLSSF-WKADVPASARLHDLLSAPFYTFYSVVRGILGPLFV  187 (246)
Q Consensus       109 H~~~i~~~~~~~~~~~~~~~~~~~~~ll~E~StP~~~~w~L~~~-~~~~s~~~~~~y~~n~l~f~~~F~v~Ri~~~p~~~  187 (246)
                      |++++.++..+.+.....+....+  +++|+|||+.|.|.+.++ |.+++. .  .++++..++.++|+++|.+..-+++
T Consensus       119 H~v~i~aF~~~lf~~~~~~~~~~~--llmEv~SiFLH~R~il~l~g~s~~~-~--~~rv~v~lN~i~f~~fR~~~~~~l~  193 (253)
T KOG4474|consen  119 HVVCIIAFVLGLFYSKFLGYVVAA--LLMEVSSIFLHLRSILKLAGLSTTL-P--SFRVVVYLNLITFFFFRLIPQIYLT  193 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHhCCCCCC-c--hhHHHHHHHHHHHHHHHhccceeEE
Confidence            999999998767656555544333  699999999998887654 444332 1  6899999999999999999888777


Q ss_pred             HhhhhhhhccCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 025888          188 YKLWLFYISGAADNLIPIWAWLSWMVVI-TSAILLSLLWVLSNWIGW  233 (246)
Q Consensus       188 ~~~~~~~~~~~~~~~ip~~~~~~~~~~~-~~~~~~ni~Wf~ki~~g~  233 (246)
                      ++...      .....|. ...+..... ....++|++-+.|+++.+
T Consensus       194 ~~~i~------~~~~~~~-~~~~~~~gg~~~l~~~n~~l~~rll~sd  233 (253)
T KOG4474|consen  194 YFLIA------NAPFLHW-YLKLFALGGLLCLAVINTVLTLRLLASD  233 (253)
T ss_pred             EEEee------eCCCcce-ehhHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence            66652      1222232 211222222 223569999999999998

>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.00086  Score=60.83  Aligned_cols=195  Identities=11%  Similarity=0.100  Sum_probs=101.2

Q ss_pred             cCchhHHHHHhhHHHHHHHHHHHHHhcCCcccC-------CC---CChhhHHHHHHHHHHHHHHHHHHHHhc--cCchHH
Q 025888           38 AEASSCFISLAHGTPAVLLSSHAAIRSTQTTFA-------SP---NTTLQDIVLEFSMAYFLMDLLHYIIFT--PRDILF  105 (246)
Q Consensus        38 ~ew~nr~vS~~Ha~v~~~la~~~~~~~~~~~~~-------~~---~t~~~~~~l~~S~GYFi~Dl~~~l~~~--~~~~~~  105 (246)
                      .+.....=..+==.++.+.++|.+..+|+. .+       +|   ..+..+..-.+=.|+-.+-+..+..-.  .+-++|
T Consensus        87 ~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf-~~~k~~w~~yP~~~~~~~~k~~Y~~e~gfY~~~l~al~~d~~rkDf~~m  165 (318)
T KOG1607|consen   87 KKFCESAWKFLYYLVSWIFGLYVMYHEPWF-YDTKSFWEGYPDQTLPPSFKAYYLLEAGFYIQLLFALFLDEKRKDFWEM  165 (318)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhheecchhh-cCHHHHHhcCCCCCCCHHHHHHHHHhhHHHHHHHHHHHhhccccHHHHH
Confidence            334444444555566777888877776653 22       23   223334444445666555555554432  345889


Q ss_pred             HHHHHHHHHHHhhhhhhc--cchhHHHHHHHHHHHhchHhHHHHHHHHccCCCCchhhhHHHhhhHHHHHHHHHhhhchh
Q 025888          106 ILHHAATLYVFVTCRYVV--HYGAFELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILG  183 (246)
Q Consensus       106 l~HH~~~i~~~~~~~~~~--~~~~~~~~~~~ll~E~StP~~~~w~L~~~~~~~s~~~~~~y~~n~l~f~~~F~v~Ri~~~  183 (246)
                      ++||++++.=... .+..  -+.|..+   +.+..+|-++.-.=.+....+.+     .+-+..-.+|+..|+..|+...
T Consensus       166 ~vHHvvTl~Li~l-Sy~~~f~R~G~li---l~lhD~SD~~Le~~K~~nY~~~~-----~~~~~~F~~F~~~wi~~RL~~~  236 (318)
T KOG1607|consen  166 VVHHVVTLILISL-SYVFNFTRVGTLI---LALHDASDVFLELGKMLNYLQFE-----AIADFVFVLFAFSWIYTRLIYY  236 (318)
T ss_pred             HHHHHHHHHHHHH-HHHhhhhccccee---eeeecchHHHHHHHHHHchhhHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999664431 1111  1111111   12344444444322221111111     1333444568899999998888


Q ss_pred             hhhHHhhhhh-hhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCcC
Q 025888          184 PLFVYKLWLF-YISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKK  244 (246)
Q Consensus       184 p~~~~~~~~~-~~~~~~~~~ip~~~~~~~~~~~~~~~~~ni~Wf~ki~~g~~k~~~~~~~~~  244 (246)
                      |....+.-.. +-+.+..+--|.  .....+......+||++|++-|.|...|.-+++.+.|
T Consensus       237 p~wil~st~~~~~~~~~~~~~~~--~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~g~~~e  296 (318)
T KOG1607|consen  237 PFWILRSTSREDFSLRQYQPKPS--YYFFNCLLLALQLLHIYWFYLILRMAYRVIKRGMQGE  296 (318)
T ss_pred             HHHHHHHhHHHHHHhhccCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            7765444321 122122333332  1122223334557999999999999998666443333

>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]

Probab=96.76  E-value=0.016  Score=52.54  Aligned_cols=187  Identities=12%  Similarity=0.104  Sum_probs=92.8

Q ss_pred             cCchhHHHHHhhHHHHHHHHHHHHHhcCCccc------C-C---CCChhhHHHHHHHHHHHHHHHHHHHHh--c--cCch
Q 025888           38 AEASSCFISLAHGTPAVLLSSHAAIRSTQTTF------A-S---PNTTLQDIVLEFSMAYFLMDLLHYIIF--T--PRDI  103 (246)
Q Consensus        38 ~ew~nr~vS~~Ha~v~~~la~~~~~~~~~~~~------~-~---~~t~~~~~~l~~S~GYFi~Dl~~~l~~--~--~~~~  103 (246)
                      .......=+.+--.+++..++|++...|..-+      + .   .++.+-+.---+=.||-+.......+.  .  .+-+
T Consensus       155 kRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~~~~p~lfk~fYliqaafw~qQa~ilvLqlEkprkD~~  234 (395)
T COG5058         155 KRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPVFYNPFLFKAFYLIQAAFWAQQACILVLQLEKPRKDFK  234 (395)
T ss_pred             HHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCccccCcHHHHHHHHHHHHHHHHHHhhheeeecchhhhHH
Confidence            44455555666666777777777665443211      1 2   244444444444556665553222222  2  2458


Q ss_pred             HHHHHHHHHHHHHhhhhhhccchhHHHHH--HHHHHHhchHhHH-HHHHHHccCCCCchhhhHHHhhhHHHHHHHHHhhh
Q 025888          104 LFILHHAATLYVFVTCRYVVHYGAFELLI--LLILAEITSPCQN-VWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRG  180 (246)
Q Consensus       104 ~~l~HH~~~i~~~~~~~~~~~~~~~~~~~--~~ll~E~StP~~~-~w~L~~~~~~~s~~~~~~y~~n~l~f~~~F~v~Ri  180 (246)
                      +++.||++++.-+.. .+   +-.+.-++  .+..+.+|-|++. .-.+   ++-++..   .+.+-+ .|...|+-.|=
T Consensus       235 elv~HHIVTllLI~l-SY---~fhftr~GlAI~itmDvSD~~Ls~sK~l---nYl~~~l---~~~iF~-iFv~~wIysRH  303 (395)
T COG5058         235 ELVFHHIVTLLLIWL-SY---VFHFTRMGLAIYITMDVSDFFLSLSKTL---NYLNSVL---ATFIFG-IFVFIWIYSRH  303 (395)
T ss_pred             HHHHHHHHHHHHHHH-HH---HHHHHhccceEEEEEeccHHHHHHHHHH---HHhhchh---HHHHHH-HHHHHHHHHHH
Confidence            899999999765432 11   12222222  2457889999554 3333   2222222   122222 36666666662


Q ss_pred             chhhhhHHhhh-hhhhccCCCCcchhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Q 025888          181 ILGPLFVYKLW-LFYISGAADNLIPIWAWLSWM------VVITSAILLSLLWVLSNWIGWYR  235 (246)
Q Consensus       181 ~~~p~~~~~~~-~~~~~~~~~~~ip~~~~~~~~------~~~~~~~~~ni~Wf~ki~~g~~k  235 (246)
                      .+.--..+.++ .+-..|.-+-.+|.|..-+|+      +....+.+||++|+.-|.|...|
T Consensus       304 yln~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayR  365 (395)
T COG5058         304 YLNLKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYR  365 (395)
T ss_pred             HHHHHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22211111121 111111112244555544442      22233457999999999998885

>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses

Probab=81.53  E-value=2.4  Score=27.40  Aligned_cols=22  Identities=18%  Similarity=0.182  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHhh-cCCccCcCC
Q 025888          224 LWVLSNWIGWYRN-LGYSAGKKV  245 (246)
Q Consensus       224 ~Wf~ki~~g~~k~-~~~~~~~~~  245 (246)
                      .|+....-+-+|. |.+|++||+
T Consensus        19 ~~iGl~IyQkikqIrgKkk~KKe   41 (49)
T PF11044_consen   19 AWIGLSIYQKIKQIRGKKKEKKE   41 (49)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHH
Confidence            4555444444442 344455554

The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00