Citrus Sinensis ID: 025903

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVATAA
Secondary Structure (PSIPRED)
ccccHHHHHHHHccccHHcccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccHHHcccccccccccccccccccccccHHHHHHHHHHcccEEccccccccccccccccEEEEEEEEEccccEEEEEEccccccccEEEEcEEEEEEccccEEEccccccccEEEEEEEEEccccEEEEEEccccccccccccccccccEEEEEEEEcccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccEEEcccccccccccccccEEEEEEEEEEcccEEEEEEEcccccccEEEEEEEEEEEccccEEEcccEEcccEEEEEEEEcccccEEEEEEEccccccHcccccccccEEEEEEEEEccccccEEEEcc
Coil and Loop (DISEMBL)
MAHRRCLHVLSRHAAALlslktpptlpfstsislkgltpfqhrslisstlgptnwshyrhfssnknddegedvdedededeetadesyegeeigdtvpdlgreytlEEKEAEAAEIGYkvlgplrksdrvfkkYEPAFAVVQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLgsqhqtiigrpmvpdaAVHAVVEEHALDAKVIIFKKKRrknyrrtkghrqeLTKLRIVDIQGIEKRVEVATAA
Flexible Loop (DISEMBL)
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHfssnknddegedvdEDEDEDeetadesyegeeigdtvpdlGREYTLEEKEAEaaeigykvlgplRKSDRVFKKYEPAFAVVQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEhaldakviifkkkrrknyrrtkghrqeltklrivdiqgiekrvevataa
Low Complexity Region (SEG)
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHFSSNKNddegedvdedededeetadesyegeeIGDTVPDLGREYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDaavhavveehaLDAKVIIFkkkrrknyrrtkGHRQELTKLRIVDIQGIEKRVEVATAA
Disordered region (IsUnstruct)
*****CLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHY******************************************************AAEIGYKVLGPLRKSDRVFKKYEPAFAVVQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRT**HRQELTKLRIVDIQGIE*********
Disordered Region (DISOPRED)
********VLSRHAAALLSLKTP******************HRSLISSTLGPTNW***************************************************************************FKKYEPAFAVVQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG***********
Disordered Region (DISEMBL)
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHFSS****************************EIGDTVPDLGREYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVATAA
Disordered Region (DISPRO)
****RCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHFS****************************************EYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNY**TKGHRQELTKLRIVDIQGIEKRVEVAT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVATAA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
Q8L9A0	270	50S ribosomal protein L21	yes	no	0.943	0.859	0.559	1e-52
P24613	256	50S ribosomal protein L21	N/A	no	0.406	0.390	0.561	4e-20
B6IR01	103	50S ribosomal protein L21	yes	no	0.390	0.932	0.480	1e-16
P51412	220	50S ribosomal protein L21	no	no	0.532	0.595	0.426	3e-16
Q54IF0	172	Probable 39S ribosomal pr	yes	no	0.430	0.616	0.426	8e-16
Q2VZU4	100	50S ribosomal protein L21	yes	no	0.369	0.91	0.455	7e-15
Q1GZ51	104	50S ribosomal protein L21	yes	no	0.357	0.846	0.449	3e-14
Q0AKX7	223	50S ribosomal protein L21	yes	no	0.386	0.426	0.425	6e-14
A9BHC0	104	50S ribosomal protein L21	yes	no	0.382	0.903	0.436	9e-14
B8E0B4	105	50S ribosomal protein L21	yes	no	0.369	0.866	0.478	1e-13

>sp|Q8L9A0|RM21_ARATH 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1

 Score =  206 bits (523), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 141/252 (55%), Positives = 173/252 (68%), Gaps = 20/252 (7%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLP------FS-TSISLKGLTPFQHRSLISSTLGPT 53
           MA  RC   LSR A  + S+    ++       FS TSIS   + P  +RSL  +    +
Sbjct: 1   MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSGTSISHGTVIP--NRSLTRNLPWYS 58

Query: 54  NW--SHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEA 111
           +W  S  R FSSN  D + ++   + ++D+E   E +E     D   ++ REY+  EK  
Sbjct: 59  HWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFEDS--ADM--EVEREYSPAEKVE 114

Query: 112 EAAEIGYKVLGPLRKSDRVFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVNDKLI 166
           EA EIGYKV+GPL+ S+R+FK YEP FA+V     QFKVSNGDSIFTE+LKFC++NDKL 
Sbjct: 115 EAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLE 174

Query: 167 LNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT 226
           L KVLLLGS  QTIIGRP++PDA VHAVVEEHALD KV+IFKKKRRKNYRRT+GHRQELT
Sbjct: 175 LTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELT 234

Query: 227 KLRIVDIQGIEK 238
           KLRI DIQGIEK
Sbjct: 235 KLRITDIQGIEK 246

This protein binds to 23S ribosomal RNA in the presence of protein L20.
Arabidopsis thaliana (taxid: 3702)

>sp|P24613|RK21_SPIOL 50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 76/105 (72%), Gaps = 5/105 (4%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           FAVV     Q+ V  G  I+T+RLK   VNDK++LNKVLL+G++  T IG P+V +AAVH
Sbjct: 124 FAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVH 183

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIE 237
           AVVEE  LD KVI+FK K++KNYRR  GHRQ +T+++I  I G E
Sbjct: 184 AVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYE 228

This protein binds to 23S ribosomal RNA in the presence of protein L20.

Spinacia oleracea (taxid: 3562)

>sp|B6IR01|RL21_RHOCS 50S ribosomal protein L21 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplU PE=3 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 6/102 (5%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           FAV+     Q+KV+NGD I  E+L   +    + L+ VL++    +T IG P+V  AAV 
Sbjct: 2   FAVIRTGGKQYKVANGDVIKVEKL-VADAGATVTLDDVLMVSDAGKTTIGTPVVQGAAVT 60

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 234
           A V   +   K+IIFKKKRR+NYRR  GHRQ+LT LRI  IQ
Sbjct: 61  AEVVAQSRGPKIIIFKKKRRQNYRRKNGHRQDLTVLRITGIQ 102

This protein binds to 23S rRNA in the presence of protein L20.

Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

>sp|P51412|RK21_ARATH 50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 5/136 (3%)

Query: 108 EKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVN 162
           E E E  +I   V+  + +      K E  FAV+     Q+ V  G  ++T+RLK   V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 163 DKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHR 222
           D+++LNKVLL+G++  T IG+P+V +A VHAVVE   L+ KV++FK K +K YRR  GHR
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190

Query: 223 QELTKLRIVDIQGIEK 238
           Q  T++RI  I G E+
Sbjct: 191 QPNTRIRITGITGYEE 206

This protein binds to 23S ribosomal RNA in the presence of protein L20.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54IF0|RM21_DICDI Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum GN=mrpl21 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 73/115 (63%), Gaps = 9/115 (7%)

Query: 137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAV 191
           +FAVV     Q+KV  GD I T++++  +V + ++L+KVLL+G++++TIIG+P++ +  V
Sbjct: 61  SFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETIIGKPIISNFKV 119

Query: 192 HAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVATAA 246
           HA +EE A    V IFK K RKNY+RT G +   T +R   I GI K  E  T  
Sbjct: 120 HAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIR---IGGIIKGQETTTTT 171

Dictyostelium discoideum (taxid: 44689)

>sp|Q2VZU4|RL21_MAGSA 50S ribosomal protein L21 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplU PE=3 SV=1

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 10/101 (9%)

Query: 138 FAVVQ-----FKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           FAV+Q     +KV++GD I  E+L   E   +++L++VL++G +    IG P+V  A+V 
Sbjct: 2   FAVIQTGGKQYKVASGDVIRVEKLA-GEAGAEVVLDQVLMVGDK----IGVPVVAGASVK 56

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
           A V   A   K+I+FKK+RR+N RR  GHRQ+LT LRI DI
Sbjct: 57  ATVVAQARGEKIIVFKKRRRQNSRRKNGHRQDLTILRITDI 97

This protein binds to 23S rRNA in the presence of protein L20.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|Q1GZ51|RL21_METFK 50S ribosomal protein L21 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rplU PE=3 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 1/89 (1%)

Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
           Q++V+ GD +  E+L   EV  ++ L+KVLL+     T IG P+V  A+V A V  H   
Sbjct: 11  QYRVAAGDKLKVEKLA-GEVGSEITLDKVLLVSDGDNTTIGSPLVQGASVQAKVVAHGRG 69

Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
            KV+IFK +RRK+YR+T+GHRQ  T+++I
Sbjct: 70  DKVLIFKMRRRKHYRKTQGHRQSFTEIQI 98

This protein binds to 23S rRNA in the presence of protein L20.

Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) (taxid: 265072)

>sp|Q0AKX7|RL21_MARMM 50S ribosomal protein L21 OS=Maricaulis maris (strain MCS10) GN=rplU PE=3 SV=1

 Score = 77.8 bits (190), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 6/101 (5%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           FAV+     Q++V+ GD I  E+L+     D L L  VL+LGS+    +G P +  A V 
Sbjct: 2   FAVIKTGGKQYRVAAGDEIRIEKLEGA-AGDTLDLGDVLMLGSEAGVTVGSPTIDGAQVI 60

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
             + +     K+I+FKK+RR+NYRRTKGHRQ  T +RI +I
Sbjct: 61  GELLDTNRARKIIVFKKRRRQNYRRTKGHRQWGTVVRIAEI 101

This protein binds to 23S rRNA in the presence of protein L20.

Maricaulis maris (strain MCS10) (taxid: 394221)

>sp|A9BHC0|RL21_PETMO 50S ribosomal protein L21 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplU PE=3 SV=1

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 59/94 (62%)

Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
           Q+KV     I+TE++K  +  ++++L+KV+ L  + +   G+P V  A V   V EH  D
Sbjct: 11  QYKVEKDQVIYTEKVKDVDPGNEVVLDKVIYLSKEEEKKAGKPYVEGAKVITEVVEHGKD 70

Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 235
            KV I K + RKNYRR KGHRQE T L+I +I+G
Sbjct: 71  RKVKIIKFEGRKNYRREKGHRQEYTALKIKEIEG 104

This protein binds to 23S rRNA in the presence of protein L20.

Petrotoga mobilis (strain DSM 10674 / SJ95) (taxid: 403833)

>sp|B8E0B4|RL21_DICTD 50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplU PE=3 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
           Q+KVS G  +  E+LK   V D+++L+KVLL+G + + IIG+P V  A V A V      
Sbjct: 11  QYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKVIAKVVRQDKY 69

Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
            KVI+FK KR+K+YRR  GHRQ  T+L I +I
Sbjct: 70  PKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEI 101

This protein binds to 23S rRNA in the presence of protein L20.

Dictyoglomus turgidum (strain Z-1310 / DSM 6724) (taxid: 515635)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
255556067	268	50S ribosomal protein L21, mitochondrial	0.906	0.832	0.610	9e-64
313585316	271	mitochondrial 50S ribosomal protein L21	0.934	0.848	0.643	6e-59
449452985	270	PREDICTED: 50S ribosomal protein L21, mi	0.963	0.877	0.630	5e-57
449489339	270	PREDICTED: LOW QUALITY PROTEIN: 50S ribo	0.963	0.877	0.626	6e-57
307136145	279	50S ribosomal protein l21 mitochondrial	0.947	0.835	0.620	1e-56
297798872	770	hypothetical protein ARALYDRAFT_328625 [	0.959	0.306	0.548	7e-53
356548719	267	PREDICTED: 50S ribosomal protein L21, mi	0.930	0.857	0.603	2e-51
357511751	290	50S ribosomal protein L21 [Medicago trun	0.947	0.803	0.577	2e-51
357511749	300	50S ribosomal protein L21 [Medicago trun	0.947	0.776	0.577	3e-51
388506582	300	unknown [Medicago truncatula]	0.947	0.776	0.577	3e-51

>gi|255556067|ref|XP_002519068.1| 50S ribosomal protein L21, mitochondrial precursor, putative [Ricinus communis] gi|223541731|gb|EEF43279.1| 50S ribosomal protein L21, mitochondrial precursor, putative [Ricinus communis]

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 158/259 (61%), Positives = 182/259 (70%), Gaps = 36/259 (13%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPT-------LP-FSTSISLKGLTPFQHRSLISSTLGP 52
           MA RR LH L+R   A++S  + PT       LP F +S+S+K L      SLI +    
Sbjct: 1   MAQRRRLHSLTRQVIAIIS--SNPTQLHHTVKLPSFPSSLSIKTL----RSSLIFTNTNA 54

Query: 53  TN---WSHY-----RHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREY 104
           T    WSH+     R+FSS+  D    D  ED+  D +       GEE+ ++  DL REY
Sbjct: 55  TCHSLWSHHHHRNHRYFSSDYGDKSENDETEDDGSDSD-------GEEVTES--DLKREY 105

Query: 105 TLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTERLKFC 159
           TL+EKE EAA IGYKV+GPL  S+RV K YEP FAV+Q     FKVSNGD IFTERLKFC
Sbjct: 106 TLQEKEEEAAAIGYKVIGPLGDSERVIKAYEPVFAVIQIGSHQFKVSNGDCIFTERLKFC 165

Query: 160 EVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTK 219
           +VNDKLILNKVLL+GSQ QTI+GRPMVPDA VHA+VEEHALDAKVIIFKKKRRKNYRRTK
Sbjct: 166 DVNDKLILNKVLLVGSQTQTIVGRPMVPDAVVHAIVEEHALDAKVIIFKKKRRKNYRRTK 225

Query: 220 GHRQELTKLRIVDIQGIEK 238
           GHRQELTKLRI DIQGIEK
Sbjct: 226 GHRQELTKLRITDIQGIEK 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313585316|gb|ADR70863.1| mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 164/255 (64%), Positives = 180/255 (70%), Gaps = 25/255 (9%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTL--PFSTSISLKGLTPFQHRSLISS----TLGPTN 54
           MA RRCLH L+R A ALLS   P TL  P   + S   L   +   +  S    T   + 
Sbjct: 1   MAQRRCLHTLTRQAIALLS-SNPTTLYHPCKVAASFPNLNSVKALLICKSSHVFTKADSI 59

Query: 55  WS------HYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEE 108
           W       H R+FSS     +  D  E++DEDEETA E  +GEE+  +  DL REYT EE
Sbjct: 60  WCSFWPYHHRRYFSS-----DSRDESENDDEDEETAGEDSDGEEVKGS--DLKREYTAEE 112

Query: 109 KEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTERLKFCEVND 163
           KE EAA IGYKV+GPL+KSD VFK YEP FAVVQ     FKVSNGD IFTE+LKFCEVND
Sbjct: 113 KEEEAAAIGYKVVGPLQKSDLVFKPYEPVFAVVQIGSHQFKVSNGDCIFTEKLKFCEVND 172

Query: 164 KLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQ 223
           KLILNKVLLLGS  QTI+GRP VPDAAVHAVVEEHALDAK IIFKKKRRKNYRRTKGHRQ
Sbjct: 173 KLILNKVLLLGSSSQTIVGRPTVPDAAVHAVVEEHALDAKAIIFKKKRRKNYRRTKGHRQ 232

Query: 224 ELTKLRIVDIQGIEK 238
           ELTKLRI DIQGIEK
Sbjct: 233 ELTKLRITDIQGIEK 247

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452985|ref|XP_004144239.1| PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Cucumis sativus]

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 157/249 (63%), Positives = 179/249 (71%), Gaps = 12/249 (4%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSL---ISSTLGP---TN 54
           MA+RRCL VL+RHA+A+ S K P   P  T+ S        H SL   +S+   P   T 
Sbjct: 1   MANRRCLQVLTRHASAIFSTK-PYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTY 59

Query: 55  WSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAA 114
           W H R+ SS+  +   +D  EDEDEDE+      E + I  +   + +EYT EE EAEAA
Sbjct: 60  WPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAA 119

Query: 115 EIGYKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTERLKFCEVNDKLILNK 169
            IGYKVLGPL +S+ VFK YEPAFAVVQ     FKVSNGDSIFTERLKFC+VNDKLILNK
Sbjct: 120 AIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 179

Query: 170 VLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 229
           VLL+GS  QTI+GRP VP A V AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR
Sbjct: 180 VLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 239

Query: 230 IVDIQGIEK 238
           IVDIQG+EK
Sbjct: 240 IVDIQGVEK 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489339|ref|XP_004158283.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosomal protein L21, mitochondrial-like [Cucumis sativus]

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 156/249 (62%), Positives = 178/249 (71%), Gaps = 12/249 (4%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSL---ISSTLGP---TN 54
           MA+RRCL VL+RHA+A+ S K P   P  T+ S        H SL   +S+   P   T 
Sbjct: 1   MANRRCLQVLTRHASAIFSTK-PYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTY 59

Query: 55  WSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAA 114
           W H R+ SS+  +   +D  EDEDEDE+      E + I  +   + +EYT EE EAEAA
Sbjct: 60  WPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAA 119

Query: 115 EIGYKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTERLKFCEVNDKLILNK 169
            IGYKVLGPL +S+ VFK YEPAFAVVQ     FKVSNGDSIFTERLKFC+VNDKLILNK
Sbjct: 120 AIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 179

Query: 170 VLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 229
           VLL+GS  QTI+GRP VP A V AVVEEHALDAKVIIFK KRRKNYRRTKGHRQELTKLR
Sbjct: 180 VLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKXKRRKNYRRTKGHRQELTKLR 239

Query: 230 IVDIQGIEK 238
           IVDIQG+EK
Sbjct: 240 IVDIQGVEK 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136145|gb|ADN33989.1| 50S ribosomal protein l21 mitochondrial precursor [Cucumis melo subsp. melo]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/253 (62%), Positives = 182/253 (71%), Gaps = 20/253 (7%)

Query: 1   MAHRRCLHVLSRHAAALLS-------LKTPPTLPFSTSISLKGLTPFQHRSLISSTLGP- 52
           MA+RRCL VL+RHA+A+LS       LK  P+L F    +   L+     + +S+   P 
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLS-----NCLSAKTDPS 64

Query: 53  --TNWSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKE 110
             T WSH R+ SS+  +   +D  EDEDEDE+      E + I  +   + +EYT EE E
Sbjct: 65  LCTYWSHTRYLSSDSRNGNEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEME 124

Query: 111 AEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTERLKFCEVNDKL 165
           AEAA IGYKVLGPL +S+ +FK YEPAFAVVQ     FKVSNGDSIFTERLKFC+VNDKL
Sbjct: 125 AEAAAIGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKL 184

Query: 166 ILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQEL 225
           ILNKVLL+GS  QTI+GRP VP A V AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQEL
Sbjct: 185 ILNKVLLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQEL 244

Query: 226 TKLRIVDIQGIEK 238
           TKLRIVDIQGIEK
Sbjct: 245 TKLRIVDIQGIEK 257

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798872|ref|XP_002867320.1| hypothetical protein ARALYDRAFT_328625 [Arabidopsis lyrata subsp. lyrata] gi|297313156|gb|EFH43579.1| hypothetical protein ARALYDRAFT_328625 [Arabidopsis lyrata subsp. lyrata]

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 137/250 (54%), Positives = 171/250 (68%), Gaps = 14/250 (5%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGL-----TPFQHRSLISSTLGPTNW 55
           MA  RC   LSR A  + S+    ++     I L G      T   +RSL  +    + W
Sbjct: 499 MASLRCFRELSRRATTVYSIIQTRSISSFPGIELSGTSISHGTVIPNRSLSRNLTWYSLW 558

Query: 56  --SHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEA 113
             S  R FSSN ND   ++   + +++++  +E  + E+  +   ++ REY+  EK  EA
Sbjct: 559 YRSQDRRFSSNTNDTAEDEESSEGEDEDDDDEEGEDFEDSAEM--EVEREYSPAEKVEEA 616

Query: 114 AEIGYKVLGPLRKSDRVFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILN 168
           AEIGYKV+GPL+ S+R+FK YEP FA+V     QFKVSNGDSIFTE+LKFC++NDKL L 
Sbjct: 617 AEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELT 676

Query: 169 KVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL 228
           KVLLLGS  QTIIGRP++PDA VHAVVEEHALD KV+IFKKKRRKNYRRT+GHRQELTKL
Sbjct: 677 KVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKL 736

Query: 229 RIVDIQGIEK 238
           RI DIQGIEK
Sbjct: 737 RITDIQGIEK 746

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548719|ref|XP_003542747.1| PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Glycine max]

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 152/252 (60%), Positives = 178/252 (70%), Gaps = 23/252 (9%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLT--PFQHRSLISSTLGP-----T 53
           MA RRCL  L++        KT P L F  + SL+ LT  PF + +  S           
Sbjct: 1   MASRRCLRALTQ--------KTTPFL-FRNASSLRSLTVPPFPNANASSPVFTVRASVFA 51

Query: 54  NWSHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGRE-YTLEEKEAE 112
            W H R+FSS K DD  ++ D+ +++ ++  ++  + ++  D     G++ YT EEKEAE
Sbjct: 52  QWPHLRYFSSEKKDDHSDEDDDGDEDYDDEEEDYVDDDDDDDVPVSRGKKVYTAEEKEAE 111

Query: 113 AAEIGYKVLGPLRKS-DRVFKKYEPAFAVVQ-----FKVSNGDSIFTERLKFCEVNDKLI 166
           AA IGY+V+GPL+K  D VFK YEP FAVVQ     FKVSN DSIFTERLKFCEVNDKLI
Sbjct: 112 AAAIGYRVVGPLQKDEDSVFKPYEPVFAVVQIGSHQFKVSNRDSIFTERLKFCEVNDKLI 171

Query: 167 LNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT 226
           LNKVLLLGS  QTIIGRP+VPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT
Sbjct: 172 LNKVLLLGSASQTIIGRPIVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT 231

Query: 227 KLRIVDIQGIEK 238
           KLRI DIQGIEK
Sbjct: 232 KLRITDIQGIEK 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511751|ref|XP_003626164.1| 50S ribosomal protein L21 [Medicago truncatula] gi|355501179|gb|AES82382.1| 50S ribosomal protein L21 [Medicago truncatula]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 152/263 (57%), Positives = 173/263 (65%), Gaps = 30/263 (11%)

Query: 4   RRCLHVLSRHAAALLSLKTPPTLPFSTSISLKG-------LTPFQHRSLISSTLGPTNWS 56
           RRCL  L+R +   LSL   P      S +          L P    S  +S  G   W 
Sbjct: 6   RRCLQALTRQSQPTLSLFKDPLSLRLLSSAALLNHNISSPLLPIFTNSKPTSAFG--QWH 63

Query: 57  HYRHFSSNKNDDEGEDVDEDE--------------DEDEETADESYEGEEIGDTVPDLGR 102
           H R+FSS+K DD  ++    E              D+D+   +E    +E  DTV    R
Sbjct: 64  HGRYFSSSKQDDHIKEGGTHEIEDEDDDSDGDDDDDDDDYDEEEGDYEDEDDDTVAVSSR 123

Query: 103 E--YTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTER 155
           +  YT EEKEAEA  IGYKV+GPL+K+D VFK YEPAFAVVQ     FKVSNGDSIFTER
Sbjct: 124 KKVYTEEEKEAEAEAIGYKVVGPLQKNDNVFKPYEPAFAVVQIGSHQFKVSNGDSIFTER 183

Query: 156 LKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNY 215
           LKFCEVNDKLILNKVLLLGS  QTI+GRP+VPD AVHAVVEEHALDAKVIIFKKKRRKNY
Sbjct: 184 LKFCEVNDKLILNKVLLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNY 243

Query: 216 RRTKGHRQELTKLRIVDIQGIEK 238
           RRTKGHRQELTKLRI +I+G+EK
Sbjct: 244 RRTKGHRQELTKLRITNIEGVEK 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511749|ref|XP_003626163.1| 50S ribosomal protein L21 [Medicago truncatula] gi|355501178|gb|AES82381.1| 50S ribosomal protein L21 [Medicago truncatula]

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 152/263 (57%), Positives = 173/263 (65%), Gaps = 30/263 (11%)

Query: 4   RRCLHVLSRHAAALLSLKTPPTLPFSTSISLKG-------LTPFQHRSLISSTLGPTNWS 56
           RRCL  L+R +   LSL   P      S +          L P    S  +S  G   W 
Sbjct: 16  RRCLQALTRQSQPTLSLFKDPLSLRLLSSAALLNHNISSPLLPIFTNSKPTSAFG--QWH 73

Query: 57  HYRHFSSNKNDDEGEDVDEDE--------------DEDEETADESYEGEEIGDTVPDLGR 102
           H R+FSS+K DD  ++    E              D+D+   +E    +E  DTV    R
Sbjct: 74  HGRYFSSSKQDDHIKEGGTHEIEDEDDDSDGDDDDDDDDYDEEEGDYEDEDDDTVAVSSR 133

Query: 103 E--YTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTER 155
           +  YT EEKEAEA  IGYKV+GPL+K+D VFK YEPAFAVVQ     FKVSNGDSIFTER
Sbjct: 134 KKVYTEEEKEAEAEAIGYKVVGPLQKNDNVFKPYEPAFAVVQIGSHQFKVSNGDSIFTER 193

Query: 156 LKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNY 215
           LKFCEVNDKLILNKVLLLGS  QTI+GRP+VPD AVHAVVEEHALDAKVIIFKKKRRKNY
Sbjct: 194 LKFCEVNDKLILNKVLLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNY 253

Query: 216 RRTKGHRQELTKLRIVDIQGIEK 238
           RRTKGHRQELTKLRI +I+G+EK
Sbjct: 254 RRTKGHRQELTKLRITNIEGVEK 276

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506582|gb|AFK41357.1| unknown [Medicago truncatula]

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 152/263 (57%), Positives = 173/263 (65%), Gaps = 30/263 (11%)

Query: 4   RRCLHVLSRHAAALLSLKTPPTLPFSTSISLKG-------LTPFQHRSLISSTLGPTNWS 56
           RRCL  L+R +   LSL   P      S +          L P    S  +S  G   W 
Sbjct: 16  RRCLQALTRQSQPTLSLFKDPLSLRLLSSAALLNHNISSPLLPIFTNSKPTSAFG--QWH 73

Query: 57  HYRHFSSNKNDDEGEDVDEDE--------------DEDEETADESYEGEEIGDTVPDLGR 102
           H R+FSS+K DD  ++    E              D+D+   +E    +E  DTV    R
Sbjct: 74  HGRYFSSSKQDDHIKEGGTHEIGDEDDDSDGDDDDDDDDYDEEEGDYEDEDDDTVAVSSR 133

Query: 103 E--YTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTER 155
           +  YT EEKEAEA  IGYKV+GPL+K+D VFK YEPAFAVVQ     FKVSNGDSIFTER
Sbjct: 134 KKVYTEEEKEAEAEAIGYKVVGPLQKNDNVFKPYEPAFAVVQIGSHQFKVSNGDSIFTER 193

Query: 156 LKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNY 215
           LKFCEVNDKLILNKVLLLGS  QTI+GRP+VPD AVHAVVEEHALDAKVIIFKKKRRKNY
Sbjct: 194 LKFCEVNDKLILNKVLLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNY 253

Query: 216 RRTKGHRQELTKLRIVDIQGIEK 238
           RRTKGHRQELTKLRI +I+G+EK
Sbjct: 254 RRTKGHRQELTKLRITNIEGVEK 276

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2126699	270	NFD1 "NUCLEAR FUSION DEFECTIVE	0.959	0.874	0.431	6.6e-42
TAIR|locus:2014711	220	RPL21C "chloroplast ribosomal	0.532	0.595	0.330	7.9e-14
TIGR_CMR|GSU_3236	102	GSU_3236 "ribosomal protein L2	0.365	0.882	0.326	7.7e-07
DICTYBASE|DDB_G0288799	172	mrpl21 "ribosomal protein L21,	0.422	0.604	0.309	6.2e-06
TIGR_CMR|BA_4676	102	BA_4676 "ribosomal protein L21	0.345	0.833	0.287	0.00013
TIGR_CMR|CBU_0385	115	CBU_0385 "ribosomal protein L2	0.414	0.886	0.252	0.00037
TIGR_CMR|CHY_0367	103	CHY_0367 "ribosomal protein L2	0.373	0.893	0.268	0.00048
TIGR_CMR|SPO_1990	193	SPO_1990 "ribosomal protein L2	0.410	0.523	0.308	0.00061

TAIR|locus:2126699 NFD1 "NUCLEAR FUSION DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 107/248 (43%), Positives = 132/248 (53%)

Query:     1 MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRH 60
             MA  RC   LSR A  + S+    ++     I   G T   H ++I +     N   Y H
Sbjct:     1 MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSG-TSISHGTVIPNRSLTRNLPWYSH 59

Query:    61 FSSNKNXXXXXXXXXXXXXXXXXXXXXXXXXXIGDTVPD-----LGREYTLEEKEAEAAE 115
             +  +++                           G+   D     + REY+  EK  EA E
Sbjct:    60 WYRSQDRCFSSNTKDTDEDEESSEGEDDDEEE-GEDFEDSADMEVEREYSPAEKVEEAEE 118

Query:   116 IGYKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTERLKFCEVNDKLILNKV 170
             IGYKV+GPL+ S+R+FK YEP FA+VQ     FKVSNGDSIFTE+LKFC++NDKL L KV
Sbjct:   119 IGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKV 178

Query:   171 LLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRI 230
             LLLGS  QTIIGRP++PD           LD KV+IF            GHRQELTKLRI
Sbjct:   179 LLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRI 238

Query:   231 VDIQGIEK 238
              DIQGIEK
Sbjct:   239 TDIQGIEK 246

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0000741 "karyogamy" evidence=RCA;IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2014711 RPL21C "chloroplast ribosomal protein L21" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 45/136 (33%), Positives = 70/136 (51%)

Query:   108 EKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVN 162
             E E E  +I   V+  + +      K E  FAV+     Q+ V  G  ++T+RLK   V+
Sbjct:    71 EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query:   163 DKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHR 222
             D+++LNKVLL+G++  T IG+P+V +           L+ KV++F            GHR
Sbjct:   131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190

Query:   223 QELTKLRIVDIQGIEK 238
             Q  T++RI  I G E+
Sbjct:   191 QPNTRIRITGITGYEE 206

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TIGR_CMR|GSU_3236 GSU_3236 "ribosomal protein L21" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 114 (45.2 bits), Expect = 7.7e-07, P = 7.7e-07
 Identities = 30/92 (32%), Positives = 43/92 (46%)

Query:   142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLD 201
             Q+KVS GD +  E+L+   V D + L  VL++G +    IG P+VP             D
Sbjct:    11 QYKVSEGDFLKVEKLEGA-VGDTVELKDVLMVGGE-TVAIGTPLVPSASVVGRIVDQGKD 68

Query:   202 AKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 233
              K+++F            GHRQ  T L+I  I
Sbjct:    69 KKILVFKSKRRKNFRKMYGHRQPRTVLKIEKI 100

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

DICTYBASE|DDB_G0288799 mrpl21 "ribosomal protein L21, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 116 (45.9 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 35/113 (30%), Positives = 57/113 (50%)

Query:   137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXX 191
             +FAVV     Q+KV  GD I T++++  +V + ++L+KVLL+G++++TIIG+P++ +   
Sbjct:    61 SFAVVHISGKQYKVIEGDIIMTDKIQV-DVGEHIVLDKVLLVGTKNETIIGKPIISNFKV 119

Query:   192 XXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIEKRVEVAT 244
                         V IF            G +   T +RI    GI K  E  T
Sbjct:   120 HAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRI---GGIIKGQETTT 169

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|BA_4676 BA_4676 "ribosomal protein L21" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
 Identities = 25/87 (28%), Positives = 38/87 (43%)

Query:   142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLD 201
             Q KV  G +I+ E+L   E  + +  +KVL +G ++  + G P+V               
Sbjct:    11 QIKVEAGQAIYIEKLDV-EAGETVTFDKVLFVGGENVKV-GSPVVEGATVTAKVEKQGRA 68

Query:   202 AKVIIFXXXXXXXXXXXXGHRQELTKL 228
              K+I+F            GHRQ  TKL
Sbjct:    69 KKIIVFKYKAKKNNRKKQGHRQPYTKL 95

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0385 CBU_0385 "ribosomal protein L21" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 91 (37.1 bits), Expect = 0.00037, P = 0.00037
 Identities = 26/103 (25%), Positives = 45/103 (43%)

Query:   142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLD 201
             Q++V+ G  +  E+L   +V   +  + VL++ +  +  IG P V D             
Sbjct:    11 QYRVTEGQMLKVEKLAQ-DVGQSVKFDDVLMVAAGDELHIGTPSVKDAAVTAEVVDQGRQ 69

Query:   202 AKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIEKRVEVAT 244
             AK+ I             GHRQ+ T ++I +I   + + EV T
Sbjct:    70 AKIEIIKFKRRKHHMKRQGHRQDFTAVKITEIALGKAKKEVKT 112

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|CHY_0367 CHY_0367 "ribosomal protein L21" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 90 (36.7 bits), Expect = 0.00048, P = 0.00048
 Identities = 25/93 (26%), Positives = 38/93 (40%)

Query:   142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLD 201
             Q+KV+ GD IF E+L   E    + +N+VL +        G P V               
Sbjct:    11 QYKVAEGDKIFVEKLN-AEPGSIVTINEVLAVVKDGSIKAGNPYVEGAKVNLKVVRHGKG 69

Query:   202 AKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQ 234
              K+I+F            GHRQ  T++ +  I+
Sbjct:    70 RKIIVFKYKPKKNYRRKYGHRQPFTEVIVEKIE 102

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_1990 SPO_1990 "ribosomal protein L21" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 104 (41.7 bits), Expect = 0.00061, P = 0.00061
 Identities = 33/107 (30%), Positives = 49/107 (45%)

Query:   142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLD 201
             Q+KV  GD +  E+L   +  +K+  N VL+LG     ++G P+V               
Sbjct:    11 QYKVQAGDVLRVEKLA-ADAGEKVQFNDVLMLGGD-APVVGAPLVDGAAVQAEVIDQIKG 68

Query:   202 AKVIIFXXXXXXXXXXXX-GHRQELTKLRIVDI--QGIEKR-VEVAT 244
              K+I F             GHRQ+LT +RI +I   G +K  V+ AT
Sbjct:    69 EKLIHFVKRRRKHSSQRTKGHRQKLTLVRITEILTSGADKTGVKAAT 115


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      246       197   0.00082  111 3  11 22  0.45    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  153 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.84u 0.09s 14.93t   Elapsed:  00:00:01
  Total cpu time:  14.84u 0.09s 14.93t   Elapsed:  00:00:01
  Start:  Sat May 11 08:03:21 2013   End:  Sat May 11 08:03:22 2013

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9A0	RM21_ARATH	No assigned EC number	0.5595	0.9430	0.8592	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
PRK05573	103	PRK05573, rplU, 50S ribosomal protein L21; Validat	3e-34
pfam00829	96	pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L	2e-33
COG0261	103	COG0261, RplU, Ribosomal protein L21 [Translation,	2e-29
PRK12278	221	PRK12278, PRK12278, 50S ribosomal protein L21/unkn	7e-23
TIGR00061	101	TIGR00061, L21, ribosomal protein L21	2e-21
CHL00075	108	CHL00075, rpl21, ribosomal protein L21	7e-20

>gnl|CDD|235510 PRK05573, rplU, 50S ribosomal protein L21; Validated

 Score =  118 bits (298), Expect = 3e-34
 Identities = 46/103 (44%), Positives = 61/103 (59%), Gaps = 6/103 (5%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           +A++     Q+KV  GD I  E+L   EV D +  ++VLL+G   +  IG P V  A V 
Sbjct: 2   YAIIKTGGKQYKVEEGDVIKVEKLD-AEVGDTVEFDEVLLVGGGEEVKIGAPYVEGAKVT 60

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 235
           A V EH    KVI+FK KRRKNYR+ +GHRQ  TK++I  I  
Sbjct: 61  AEVVEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTKVKITSINA 103

Length = 103

>gnl|CDD|201461 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein

 Score =  116 bits (292), Expect = 2e-33
 Identities = 46/96 (47%), Positives = 61/96 (63%), Gaps = 6/96 (6%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           +A++     Q+KV  GD IF E+L   EV DK+  +KVLL+G   +  IG+P V  A V 
Sbjct: 2   YAIIETGGKQYKVEEGDVIFVEKLD-AEVGDKIEFDKVLLVGGDGKVKIGKPYVEGAKVK 60

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKL 228
           A V EH    KVI+FK KRRKNYR+ +GHRQ  T++
Sbjct: 61  AEVLEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTRV 96

Length = 96

>gnl|CDD|223339 COG0261, RplU, Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

 Score =  106 bits (266), Expect = 2e-29
 Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 6/103 (5%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           +A++     Q+KV  GD I  E+L   E  DK+  ++VL++G   +  IG P V  A V 
Sbjct: 2   YAIIKTGGKQYKVEEGDVIKVEKLDA-EPGDKVEFDEVLMVGGGEEVKIGAPYVEGAKVT 60

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 235
           A V EH    KVIIFK KRRKNYR+ +GHRQ  T+++I  I  
Sbjct: 61  AEVVEHGRGKKVIIFKYKRRKNYRKKQGHRQPYTRVKITGIVA 103

Length = 103

>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion protein; Provisional

 Score = 92.6 bits (230), Expect = 7e-23
 Identities = 45/101 (44%), Positives = 59/101 (58%), Gaps = 6/101 (5%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           FAV+     Q+KV  GD +  E+L   E  + +   +VL+LG      +G P V  AAV 
Sbjct: 2   FAVIKTGGKQYKVQAGDLLRVEKLA-AEAGETVQFGEVLMLGEGDNVTVGAPFVDGAAVQ 60

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
           A V E     KVI FKK+RR++ RRTKGHRQ LT +RI +I
Sbjct: 61  AEVIEQIKGDKVIHFKKRRRQSSRRTKGHRQLLTLVRITEI 101

Length = 221

>gnl|CDD|129171 TIGR00061, L21, ribosomal protein L21

 Score = 85.1 bits (211), Expect = 2e-21
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
           Q+KV  G ++  E+L      D +  +KVL++       IG+P V  A V A VE+H   
Sbjct: 10  QYKVEEGQTVRIEKLD-AAPGDTVEFDKVLMVNKGGDVKIGKPYVEGAKVVAEVEKHGRG 68

Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 234
            KV ++K +RRK+ R+ +GHRQ  TK+++  I 
Sbjct: 69  KKVKVYKYRRRKHSRKKQGHRQPYTKVKVTKIV 101

Eubacterial and chloroplast [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 101

>gnl|CDD|177014 CHL00075, rpl21, ribosomal protein L21

 Score = 81.5 bits (202), Expect = 7e-20
 Identities = 26/79 (32%), Positives = 47/79 (59%)

Query: 160 EVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTK 219
           E   K++LN+VLL+ ++ + +IG+P + +A V   +  H    K+ ++K + +K  R+ +
Sbjct: 30  EPGTKILLNRVLLIRNESEILIGKPWLENATVKGRILHHFRGKKITVYKMRPKKKTRKKQ 89

Query: 220 GHRQELTKLRIVDIQGIEK 238
           GHRQ+LT+  I  I    K
Sbjct: 90  GHRQKLTRFLIDSISFNGK 108

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
CHL00075	108	rpl21 ribosomal protein L21	100.0
PRK05573	103	rplU 50S ribosomal protein L21; Validated	100.0
COG0261	103	RplU Ribosomal protein L21 [Translation, ribosomal	100.0
TIGR00061	101	L21 ribosomal protein L21. Eubacterial and chlorop	100.0
PRK12278	221	50S ribosomal protein L21/unknown domain fusion pr	100.0
PF00829	96	Ribosomal_L21p: Ribosomal prokaryotic L21 protein;	100.0
KOG1686	151	consensus Mitochondrial/chloroplast ribosomal L21	99.96
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	90.48
PF04931	784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	86.63

>CHL00075 rpl21 ribosomal protein L21

Probab=100.00  E-value=1.2e-37  Score=250.27  Aligned_cols=99  Identities=29%  Similarity=0.502  Sum_probs=96.3

Q ss_pred             ceEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEec
Q 025903          136 PAFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKK  210 (246)
Q Consensus       136 ~MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~K  210 (246)
                      .|||||     ||||++||+|.||+|+ +++|++|.|++|||+++++.+.+|+|||+||+|+|+|++|+||+||++||||
T Consensus         2 ~myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~i~l~~VL~~~~~~~~~iG~P~v~~a~V~a~V~~h~r~~Ki~vfK~k   80 (108)
T CHL00075          2 MTYAIIEAGGKQLWVEPGRFYDINHFP-LEPGTKILLNRVLLIRNESEILIGKPWLENATVKGRILHHFRGKKITVYKMR   80 (108)
T ss_pred             cEEEEEEECCEEEEEeCCCEEEEEEcC-CCCCCEEEEEEEEEEecCCCeEECCcEecCcEEEEEEEeecCCCCEEEEEeC
Confidence            599999     7999999999999998 7999999999999999888899999999999999999999999999999999


Q ss_pred             CCCCcccccCccCcceEEEEceEec
Q 025903          211 RRKNYRRTKGHRQELTKLRIVDIQG  235 (246)
Q Consensus       211 RRK~yrRk~GHRQ~yTrIRI~~I~~  235 (246)
                      |||+|||++||||+||+|+|++|..
T Consensus        81 rRK~yrrk~GHRQ~~T~i~I~~I~~  105 (108)
T CHL00075         81 PKKKTRKKQGHRQKLTRFLIDSISF  105 (108)
T ss_pred             CCCCccCCCccCCCcEEEEEEEEEc
Confidence            9999999999999999999999976

>PRK05573 rplU 50S ribosomal protein L21; Validated

Probab=100.00  E-value=1.8e-37  Score=246.83  Aligned_cols=98  Identities=47%  Similarity=0.746  Sum_probs=95.5

Q ss_pred             eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903          137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  211 (246)
Q Consensus       137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR  211 (246)
                      |||||     ||+|++||+|.||+|+ +++|++|.|++|||+++++++.+|+|+|+||+|+|+|++|++++|+++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~v~~l~-~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~A~V~~~~k~~Ki~vfK~kr   79 (103)
T PRK05573          1 MYAIIKTGGKQYKVEEGDVIKVEKLD-AEVGDTVEFDEVLLVGGGEEVKIGAPYVEGAKVTAEVVEHGRGKKVIVFKYKR   79 (103)
T ss_pred             CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEeEEEEEeCCCCEEECCeEcCCCEEEEEEEeccCCCcEEEEEEcC
Confidence            89999     7999999999999997 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCccCcceEEEEceEec
Q 025903          212 RKNYRRTKGHRQELTKLRIVDIQG  235 (246)
Q Consensus       212 RK~yrRk~GHRQ~yTrIRI~~I~~  235 (246)
                      ||+|+|++||||.||+|+|++|.+
T Consensus        80 RK~y~r~~GHRQ~~T~i~I~~I~~  103 (103)
T PRK05573         80 RKNYRKKQGHRQPYTKVKITSINA  103 (103)
T ss_pred             CCCccccCCccCCcEEEEEEEEeC
Confidence            999999999999999999999963

>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.3e-37  Score=244.20  Aligned_cols=98  Identities=46%  Similarity=0.728  Sum_probs=95.6

Q ss_pred             eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903          137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  211 (246)
Q Consensus       137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR  211 (246)
                      |||||     ||+|++||+|.||+|. .++|++|+|++|||+++++.+.||.||++||+|+|+|++|+|++||++|||||
T Consensus         1 mYAii~tGGKQykV~~G~~i~vEkl~-~e~g~~v~f~~VL~v~~~~~v~iG~P~v~ga~V~aeV~~hgr~kKV~i~K~k~   79 (103)
T COG0261           1 MYAIIKTGGKQYKVEEGDVIKVEKLD-AEPGDKVEFDEVLMVGGGEEVKIGAPYVEGAKVTAEVVEHGRGKKVIIFKYKR   79 (103)
T ss_pred             CeEEEEECCEEEEEecCCEEEEEEcC-CCCCCEEEEEEEEEEcCCCceEECCceecCcEEEEEEhhhCCCceEEEEEecc
Confidence            99999     7999999999999999 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCccCcceEEEEceEec
Q 025903          212 RKNYRRTKGHRQELTKLRIVDIQG  235 (246)
Q Consensus       212 RK~yrRk~GHRQ~yTrIRI~~I~~  235 (246)
                      ||+|+|++||||+||+|+|++|.+
T Consensus        80 rK~~~rk~GHRQ~yT~vkI~~I~~  103 (103)
T COG0261          80 RKNYRKKQGHRQPYTRVKITGIVA  103 (103)
T ss_pred             CcCcccccCcccceEEEEEEEeeC
Confidence            999999999999999999999964

>TIGR00061 L21 ribosomal protein L21

Probab=100.00  E-value=2e-36  Score=240.51  Aligned_cols=96  Identities=38%  Similarity=0.629  Sum_probs=93.6

Q ss_pred             EEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecCC
Q 025903          138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRR  212 (246)
Q Consensus       138 YAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KRR  212 (246)
                      ||||     ||||++||+|.||+|+ .++|+.|.|++|||+++++++.+|+|+|+||+|+|+|++|++|+||++||||||
T Consensus         1 yAIi~~gGkQykV~~Gd~i~Ve~l~-~~~G~~i~l~~VLlv~~~~~~~iG~P~l~~a~V~a~V~~~~r~~Ki~vfK~krr   79 (101)
T TIGR00061         1 YAIVEIGGKQYKVEEGQTVRIEKLD-AAPGDTVEFDKVLMVNKGGDVKIGKPYVEGAKVVAEVEKHGRGKKVKVYKYRRR   79 (101)
T ss_pred             CEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEEEEEEEecCCCeEECCeEcCCCEEEEEEEeecCCCCEEEEEeCCC
Confidence            8999     7999999999999998 799999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCccCcceEEEEceEe
Q 025903          213 KNYRRTKGHRQELTKLRIVDIQ  234 (246)
Q Consensus       213 K~yrRk~GHRQ~yTrIRI~~I~  234 (246)
                      |+|+|++||||+||+|+|++|.
T Consensus        80 K~y~r~~GHRQ~~T~i~I~~I~  101 (101)
T TIGR00061        80 KHSRKKQGHRQPYTKVKVTKIV  101 (101)
T ss_pred             CCccCCCccCCCcEEEEEEEeC
Confidence            9999999999999999999984

Eubacterial and chloroplast.

>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional

Probab=100.00  E-value=3.8e-35  Score=260.27  Aligned_cols=98  Identities=46%  Similarity=0.681  Sum_probs=95.9

Q ss_pred             eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903          137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  211 (246)
Q Consensus       137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR  211 (246)
                      |||||     ||||++||+|.|++|+ .++|++|.|++|||+++++.+.||+|||+|++|+|+|++|+||+||++|||||
T Consensus         1 MyAVI~~gGKQykV~~Gd~i~Vekl~-~~~G~~i~~~~VL~v~~~~~~~iG~P~v~~a~V~A~V~~~~kg~Ki~vfK~kr   79 (221)
T PRK12278          1 MFAVIKTGGKQYKVQAGDLLRVEKLA-AEAGETVQFGEVLMLGEGDNVTVGAPFVDGAAVQAEVIEQIKGDKVIHFKKRR   79 (221)
T ss_pred             CEEEEEeCCEEEEEeCCCEEEEeccC-CCCCCEEEEeEEEEEecCCCeEECCeEecCCEEEEEEEeecCCCCEEEEEeCC
Confidence            99999     8999999999999998 69999999999999998899999999999999999999999999999999999


Q ss_pred             CCCcccccCccCcceEEEEceEec
Q 025903          212 RKNYRRTKGHRQELTKLRIVDIQG  235 (246)
Q Consensus       212 RK~yrRk~GHRQ~yTrIRI~~I~~  235 (246)
                      ||+|||++||||.||+|+|++|..
T Consensus        80 RK~yrrk~GHRQ~~T~i~I~~I~~  103 (221)
T PRK12278         80 RQSSRRTKGHRQLLTLVRITEILA  103 (221)
T ss_pred             CCCcccCCCcCCCcEEEEEEEEEc
Confidence            999999999999999999999986

>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.9e-35  Score=231.13  Aligned_cols=91  Identities=54%  Similarity=0.857  Sum_probs=88.4

Q ss_pred             eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903          137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  211 (246)
Q Consensus       137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR  211 (246)
                      |||||     ||+|++||+|.||+|. +++||+|+|++|||+++++++.+|+|||++|+|+|+|++|++++|+++|||||
T Consensus         1 myAIi~~ggkQykV~~gd~i~v~~l~-~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~v~K~kr   79 (96)
T PF00829_consen    1 MYAIIEIGGKQYKVEEGDVIDVERLD-AEVGDKIELDKVLLIGSEDFTLIGRPYLEGAKVEATVLEHGKGKKIIVFKKKR   79 (96)
T ss_dssp             -EEEEESSSEEEEESSSEEEEEESTS-SSTTSEEEETTEEEEETSSSTCSSSSSSSSSEEEEEEEEEEEEEEEEEEEEET
T ss_pred             CEEEEEECCEEEEEeCCCEEEECCcC-cCCCCEEEEEEEEEEecCCCeEECCccCCCcEEEEEEEeccCCCcEEEEEECC
Confidence            99999     7999999999999995 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCccCcceEE
Q 025903          212 RKNYRRTKGHRQELTKL  228 (246)
Q Consensus       212 RK~yrRk~GHRQ~yTrI  228 (246)
                      ||+|+|++||||+||+|
T Consensus        80 RK~y~r~~GhRq~~T~i   96 (96)
T PF00829_consen   80 RKRYRRKQGHRQPYTRI   96 (96)
T ss_dssp             TTTEEEEEEEEEEEEEE
T ss_pred             ccccccCCccCCCeEEC
Confidence            99999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....

>KOG1686 consensus Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=8.3e-30  Score=214.02  Aligned_cols=134  Identities=47%  Similarity=0.533  Sum_probs=128.1

Q ss_pred             HHHhcceEEeccCcccccccccCCceEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCcc
Q 025903          112 EAAEIGYKVLGPLRKSDRVFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV  186 (246)
Q Consensus       112 ea~~i~~~v~~~l~~~~~~~k~~~~MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L  186 (246)
                      ||+.++++++|+|..+..-+.+|.+.||||     ||||+.||.|++++++++++||+|.|++|||+|+-+++.||+|.|
T Consensus         1 ea~~~e~v~vg~l~s~~~~~~kr~~~favv~v~srq~kvs~gd~iy~eg~~p~nv~d~i~l~kVlLvg~~~~T~~grpvv   80 (151)
T KOG1686|consen    1 MAASSETVTVGRLASACSHSIKRPSGFAVVSVGSRQRKVSSGDTIYTEGLKPKNVLDSIPLPKVLLVGPVEETRIGRPVV   80 (151)
T ss_pred             CcccceeEEEeccchhhhhccccCCccEEEEEcceeEEecCCCeeeecCccccccccccccceEEEecCcceeEecCccc
Confidence            578899999999999999999999999999     799999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEEeecCCceeEEEEecCCCCcccccCccCcceEEEEceEecccchhhhhhc
Q 025903          187 PDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVATA  245 (246)
Q Consensus       187 ~gA~VkAtVlEh~KgkKViIFK~KRRK~yrRk~GHRQ~yTrIRI~~I~~i~~p~~~~~a  245 (246)
                      ++++|.|.|++++...|+++||+|++|+|||..||||+.|+|||++|.+|+.+....++
T Consensus        81 ~~vtv~aVv~e~g~~~kvvhfk~k~~k~tr~~~~~~qe~t~LrIt~it~ie~e~~~~v~  139 (151)
T KOG1686|consen   81 KKVTVHAVVEEYGLLFKVVHFKSKQWKVTRRDLGHRQEATELRITCITGIELEKVLLVG  139 (151)
T ss_pred             ccceEEEEeeeccccccEEEEEecchhhhhhhhcccCcccEEEEeeeeeeeeccceecc
Confidence            99999999999999999999999999999999999999999999999999887755443

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=90.48  E-value=0.18  Score=47.46  Aligned_cols=9  Identities=11%  Similarity=0.483  Sum_probs=3.3

Q ss_pred             ccccccccc
Q 025903           80 DEETADESY   88 (246)
Q Consensus        80 ~~~~~~~~~   88 (246)
                      +||++|+|+
T Consensus       280 ~d~d~d~ee  288 (314)
T PF06524_consen  280 EDDDEDDEE  288 (314)
T ss_pred             ccccccccc
Confidence            333333333

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar

Probab=86.63  E-value=0.59  Score=48.48  Aligned_cols=7  Identities=43%  Similarity=0.525  Sum_probs=3.3

Q ss_pred             HHHHhcc
Q 025903          111 AEAAEIG  117 (246)
Q Consensus       111 ~ea~~i~  117 (246)
                      +-+++.|
T Consensus       707 ~l~~aL~  713 (784)
T PF04931_consen  707 ALAKALG  713 (784)
T ss_pred             HHHHHhc
Confidence            3345555

The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	246
3bbo_T	257	Homology Model For The Spinach Chloroplast 50s Subu		2e-14

>pdb|3BBO|T Chain T, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 257

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 192
           FAVV     Q+ V  G  I+T+RLK   VNDK++LNKVLL+G++  T IG P+V +    
Sbjct: 125 FAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVH 184
Query: 193 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIE 237
                  LD KVI+F            GHRQ +T+++I  I G E
Sbjct: 185 AVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYE 229

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
3bbo_T	257	Ribosomal protein L21; large ribosomal subunit, sp	7e-48
3r8s_R	103	50S ribosomal protein L21; protein biosynthesis, R	3e-34
3v2d_V	101	50S ribosomal protein L21; ribosome associated inh	4e-33
2zjr_O	100	50S ribosomal protein L21; ribosome, large ribosom	3e-32

>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 257

 Score =  157 bits (399), Expect = 7e-48
 Identities = 76/251 (30%), Positives = 108/251 (43%), Gaps = 18/251 (7%)

Query: 1   MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRH 60
           MA        S   A L   +    L  +     K  +       +S        +  R 
Sbjct: 1   MASATLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRR 60

Query: 61  FSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAAEIGYKV 120
           F     + + E  +     +++        +               +  E    E    +
Sbjct: 61  FQEIPEELKAEFEEFQRPPNQKPQLSDVLPD-------------DFQAPEPGTPEYNDII 107

Query: 121 LGPLRKSDRVFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGS 175
              L K      + E  FAVV     Q+ V  G  I+T+RLK   VNDK++LNKVLL+G+
Sbjct: 108 NQFLPKKGPPPPREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGT 167

Query: 176 QHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 235
           +  T IG P+V +AAVHAVVEE  LD KVI+FK K++KNYRR  GHRQ +T+++I  I G
Sbjct: 168 KASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITG 227

Query: 236 IEKRVEVATAA 246
            E        A
Sbjct: 228 YEDYPASTLEA 238

>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ... Length = 103

 Score =  118 bits (297), Expect = 3e-34
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           +AV      Q +VS G ++  E+L      + +   +VL++ +  +  IG P V    + 
Sbjct: 2   YAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 235
           A V  H    KV I K +RRK+YR+ +GHRQ  T ++I  I  
Sbjct: 61  AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGISA 103

>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ... Length = 101

 Score =  114 bits (289), Expect = 4e-33
 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           FA+V     Q++V  G  +  E+L   E    + L  +LL G +  T++G P+V  A+V 
Sbjct: 2   FAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLGGEK--TVVGTPVVEGASVV 58

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 235
           A V  H    K+++ K K +  YRR KGHRQ  T+L I +I+G
Sbjct: 59  AEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG 101

>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ... Length = 100

 Score =  112 bits (284), Expect = 3e-32
 Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 9/103 (8%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           FA++     Q++VS GD I  E L+  E  DK+ L  + + G   +  +         V 
Sbjct: 2   FAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELKALFVGG---EQTVFGEDAGKYTVQ 57

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 235
           A V EH    K+ I K K    YRR  GHRQ  T ++I+ IQG
Sbjct: 58  AEVVEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGIQG 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
3r8s_R	103	50S ribosomal protein L21; protein biosynthesis, R	100.0
3v2d_V	101	50S ribosomal protein L21; ribosome associated inh	100.0
2zjr_O	100	50S ribosomal protein L21; ribosome, large ribosom	100.0
3bbo_T	257	Ribosomal protein L21; large ribosomal subunit, sp	100.0

>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...

Probab=100.00  E-value=4.4e-39  Score=255.34  Aligned_cols=98  Identities=34%  Similarity=0.562  Sum_probs=95.8

Q ss_pred             eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903          137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  211 (246)
Q Consensus       137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR  211 (246)
                      |||||     ||||++||+|.||+|+ +++|++|+|++|||+++++++.+|+|+|++|+|+|+|++|+|++|+++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~~VLlv~~~~~~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr   79 (103)
T 3r8s_R            1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR   79 (103)
T ss_dssp             CEEEEECSSSEEEEETTCEEEESCCC-SCTTCEEEECCEEEEESSSEEECSSSSCTTCEEEEEEEEEEECCCEEEEEEET
T ss_pred             CEEEEEECCEEEEEeCCCEEEECCcC-CCCCCEEEEeEEEEEecCCCEEECCcccCCcEEEEEEEeccCCCcEEEEEecC
Confidence            99999     8999999999999998 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCccCcceEEEEceEec
Q 025903          212 RKNYRRTKGHRQELTKLRIVDIQG  235 (246)
Q Consensus       212 RK~yrRk~GHRQ~yTrIRI~~I~~  235 (246)
                      ||+|||++||||+||+|+|++|.+
T Consensus        80 rK~yrrk~GHRQ~~T~l~I~~I~~  103 (103)
T 3r8s_R           80 RKHYRKQQGHRQWFTDVKITGISA  103 (103)
T ss_dssp             TTTEEEEEEECCEEEEEEEEEEEC
T ss_pred             CCCccCCCcccCCeEEEEEEEEEC
Confidence            999999999999999999999974

>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...

Probab=100.00  E-value=4.3e-38  Score=249.14  Aligned_cols=96  Identities=42%  Similarity=0.638  Sum_probs=92.5

Q ss_pred             eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903          137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  211 (246)
Q Consensus       137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR  211 (246)
                      |||||     ||||++||+|.||+|+ +++|++|+|+ |||+++++ +.+|+|+|++|+|+|+|++|+|++|+++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~~~-~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr   77 (101)
T 3v2d_V            1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELP-VLLLGGEK-TVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA   77 (101)
T ss_dssp             CEEEEEETTEEEEECTTCEEEESCCS-CCTTCEEEEC-EEEEESSS-CEECSSSCSSCCEEEEEEEEEECCCEEEEEEET
T ss_pred             CEEEEEeCCEEEEEeCCCEEEECCcC-CCCCCEEEEE-EEEECCCc-eEECCcccCCCEEEEEEeeccCCCcEEEEEECC
Confidence            99999     7999999999999998 7999999999 99998655 899999999999999999999999999999999


Q ss_pred             CCCcccccCccCcceEEEEceEec
Q 025903          212 RKNYRRTKGHRQELTKLRIVDIQG  235 (246)
Q Consensus       212 RK~yrRk~GHRQ~yTrIRI~~I~~  235 (246)
                      ||+|||++||||+||+|+|++|.+
T Consensus        78 rK~yrrk~GHRQ~~T~l~I~~I~g  101 (101)
T 3v2d_V           78 KVQYRRKKGHRQPYTELLIKEIRG  101 (101)
T ss_dssp             TTTEEEEEEECCEEEEEEEEEECC
T ss_pred             CCCcCCCCcccCCeEEEEEEEEeC
Confidence            999999999999999999999964

>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...

Probab=100.00  E-value=1.7e-37  Score=245.10  Aligned_cols=95  Identities=42%  Similarity=0.645  Sum_probs=87.4

Q ss_pred             eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903          137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  211 (246)
Q Consensus       137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR  211 (246)
                      |||||     ||||++||+|.||+|+ +++|++|+|+ |||+++ +++.+|+| |++|+|+|+|++|+|++|+++|||||
T Consensus         1 myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~-~~~~iG~P-v~~a~V~a~V~~~~k~~Kv~vfK~kr   76 (100)
T 2zjr_O            1 MFAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELK-ALFVGG-EQTVFGED-AGKYTVQAEVVEHGRGKKIYIRKYKS   76 (100)
T ss_dssp             ----CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECC-SCEETT-SCEECSST-TTTSCEEEEEEECCBCCCEEEEEECS
T ss_pred             CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEE-EEEEcC-CCeEECCc-CCCCEEEEEEEeecCCCcEEEEEECC
Confidence            89999     7999999999999998 7999999999 999998 88999999 99999999999999999999999999


Q ss_pred             CCCcccccCccCcceEEEEceEec
Q 025903          212 RKNYRRTKGHRQELTKLRIVDIQG  235 (246)
Q Consensus       212 RK~yrRk~GHRQ~yTrIRI~~I~~  235 (246)
                      ||+|||++||||+||+|+|++|.+
T Consensus        77 rK~yrrk~GHRQ~~T~l~I~~I~~  100 (100)
T 2zjr_O           77 GVQYRRRTGHRQNFTAIKILGIQG  100 (100)
T ss_dssp             SSCCEEEEEECCBEEEEECCCC--
T ss_pred             CCCCcCCCCccCCcEEEEEEEEEC
Confidence            999999999999999999999863

>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=3.9e-38  Score=282.41  Aligned_cols=111  Identities=54%  Similarity=0.786  Sum_probs=97.2

Q ss_pred             ccccCCceEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCcee
Q 025903          130 VFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKV  204 (246)
Q Consensus       130 ~~k~~~~MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKV  204 (246)
                      ..+.++.|||||     ||||++||+|.|++|+++++|++|.|++|||++++++++||+|||+|++|+|+|++|+||+||
T Consensus       117 ~~k~~~~MYAIIetGGKQYKV~~GD~I~VEKL~~aevGd~V~LdkVLlVg~~d~t~VG~P~V~gAkV~AtVveh~KgkKI  196 (257)
T 3bbo_T          117 PPPREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKV  196 (257)
T ss_dssp             -------CCCCCCSSSCCCCCCTTCCCCCCCCTTSCTTCEEECTTCCCBCSSSCBCCSSSSCSSCCCEEECCCCCCCSCC
T ss_pred             CCCcCCCeEEEEEECCEEEEEeCCCEEEEeCCCCCCCCCEEEEEEEEEEeCCCCeEeCCcccCCCEEEEEEEeecCCCcE
Confidence            345667899999     899999999999999867999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCcccccCccCcceEEEEceEecccchh
Q 025903          205 IIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRV  240 (246)
Q Consensus       205 iIFK~KRRK~yrRk~GHRQ~yTrIRI~~I~~i~~p~  240 (246)
                      +||||||||+|||++||||+||+|||++|.+...+.
T Consensus       197 iVFK~KRRK~yRRk~GHRQ~~T~LrI~~I~~~g~~~  232 (257)
T 3bbo_T          197 IVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYP  232 (257)
T ss_dssp             CEEECCTTTTCCEEECCCCCCCCCCCCCCCC-----
T ss_pred             EEEEeCCCCCCcCCCCccCCcEEEEEEEEEcCCCCc
Confidence            999999999999999999999999999999876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d2qamr1	103	b.155.1.1 (R:1-103) Ribosomal protein L21p {Escher	1e-31
d2j01v1	101	b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermu	6e-28
d2zjro1	94	b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinoco	7e-25

>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]} Length = 103

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (276), Expect = 1e-31
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           +AV      Q +VS G ++  E+L      + +   +VL++ +  +  IG P V    + 
Sbjct: 2   YAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
           A V  H    KV I K +RRK+YR+ +GHRQ  T ++I  I
Sbjct: 61  AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGI 101

>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]} Length = 101

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Thermus thermophilus [TaxId: 274]

 Score =  100 bits (251), Expect = 6e-28
 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
           FA+V     Q++V  G  +  E+L   E    + L  +LL G   +T++G P+V  A+V 
Sbjct: 2   FAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLGG--EKTVVGTPVVEGASVV 58

Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 235
           A V  H    K+++ K K +  YRR KGHRQ  T+L I +I+G
Sbjct: 59  AEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG 101

>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]} Length = 94

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 92.2 bits (229), Expect = 7e-25
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
           Q++VS GD I  E L+  E  DK+ L  + +     +  +         V A V EH   
Sbjct: 7   QYRVSEGDVIRVESLQ-GEAGDKVELKALFV---GGEQTVFGEDAGKYTVQAEVVEHGRG 62

Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
            K+ I K K    YRR  GHRQ  T ++I+ I
Sbjct: 63  KKIYIRKYKSGVQYRRRTGHRQNFTAIKILGI 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d2qamr1	103	Ribosomal protein L21p {Escherichia coli [TaxId: 5	100.0
d2j01v1	101	Ribosomal protein L21p {Thermus thermophilus [TaxI	100.0
d2zjro1	94	Ribosomal protein L21p {Deinococcus radiodurans [T	99.97

>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.2e-38  Score=248.24  Aligned_cols=98  Identities=34%  Similarity=0.562  Sum_probs=95.5

Q ss_pred             eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903          137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  211 (246)
Q Consensus       137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR  211 (246)
                      |||||     ||||++||+|.||+|. .++|++|.|++|||+++++.+.+|+|||+||+|+|+|++|+|++||++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~v~~l~-~~~G~~i~~~~VLlv~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~kr   79 (103)
T d2qamr1           1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR   79 (103)
T ss_dssp             CCCCCCSSSSCCCCCSSCCEEESCCC-CCTTCEEEECCCSCCCSSSCCCCSSSSCSSCCEEEEEEEEECCCCEEEEEECT
T ss_pred             CEEEEEECCEEEEEcCCCEEEEeccC-CCCCCcEEehhheEcCCCCcEEeCCCcccccEEEEEEeeecCCccEEEEEecC
Confidence            99999     8999999999999997 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCccCcceEEEEceEec
Q 025903          212 RKNYRRTKGHRQELTKLRIVDIQG  235 (246)
Q Consensus       212 RK~yrRk~GHRQ~yTrIRI~~I~~  235 (246)
                      ||+|+|++||||+||+|+|++|.+
T Consensus        80 rk~yrr~~GHRQ~~T~i~I~~I~a  103 (103)
T d2qamr1          80 RKHYRKQQGHRQWFTDVKITGISA  103 (103)
T ss_dssp             TSSCEEEEEECCCEEEECCCCCCC
T ss_pred             CCcccccCcccCCeEEEEEEEEeC
Confidence            999999999999999999999864

>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8e-36  Score=233.65  Aligned_cols=96  Identities=39%  Similarity=0.573  Sum_probs=89.4

Q ss_pred             eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903          137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR  211 (246)
Q Consensus       137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR  211 (246)
                      |||||     ||||++||+|.||+|+ +++|+.|.|+.||+. + +.+.||+|+|+||+|+|+|++|+||+||++|||||
T Consensus         1 MyAVi~~gGkQykV~~Gd~l~v~~l~-~~~g~~v~~~~ll~~-~-~~~~iG~P~l~~a~V~a~V~~~~k~~Kv~vfK~kr   77 (101)
T d2j01v1           1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLG-G-EKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA   77 (101)
T ss_dssp             CCCEEEETTEEEECCSSCCCCCCCCS-CCSSSCCBCCCCSCC-C-SSTTCCCCCGGGCSSCCCCEECCCCCCCCCCCCCE
T ss_pred             CEEEEEECCEEEEEcCCCEEEEeccc-CCCCccEEEEEEEEc-C-CceeeCCcccCCcEEEEEEEEecCCCcEEEEEEcC
Confidence            99999     7999999999999998 799999999955553 3 45779999999999999999999999999999999


Q ss_pred             CCCcccccCccCcceEEEEceEec
Q 025903          212 RKNYRRTKGHRQELTKLRIVDIQG  235 (246)
Q Consensus       212 RK~yrRk~GHRQ~yTrIRI~~I~~  235 (246)
                      ||+|+|++||||+||+|+|++|++
T Consensus        78 RK~y~R~~GHRQ~~T~l~I~~I~G  101 (101)
T d2j01v1          78 KVQYRRKKGHRQPYTELLIKEIRG  101 (101)
T ss_dssp             ECCCCEECCCCCCCCCCCCEECCC
T ss_pred             cCCcccCCcccCCeEEEEEEEeeC
Confidence            999999999999999999999974

>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.97  E-value=1.5e-31  Score=206.96  Aligned_cols=88  Identities=39%  Similarity=0.512  Sum_probs=80.8

Q ss_pred             EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecCCCCcccccCc
Q 025903          142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGH  221 (246)
Q Consensus       142 QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KRRK~yrRk~GH  221 (246)
                      ||||++||+|.||+|+ .++|++|.|+.||+.|  +.+ +|.|++.+|+|+|+|++|+|++||++|||||||+|+|++||
T Consensus         7 QykV~~Gd~i~vekl~-~~~G~~i~~~~vl~~g--~~~-~~g~~l~~a~V~a~V~~~~r~~Ki~vfK~krrK~yrRk~GH   82 (94)
T d2zjro1           7 QYRVSEGDVIRVESLQ-GEAGDKVELKALFVGG--EQT-VFGEDAGKYTVQAEVVEHGRGKKIYIRKYKSGVQYRRRTGH   82 (94)
T ss_dssp             SCCSCCEEEEECCSCC-SSCCEEEECCSCEETT--SCE-ECSSTTTTSCEEEEEEECCBCCCEEEEEECSSSCCEEEEEE
T ss_pred             EEEEcCCCEEEEeccc-CccCCceEEeeeEEcc--ccc-ccCCCCceeEEEEEEEEeccCCceEEEEEcCCCCccccCCc
Confidence            7999999999999998 7999999999888733  344 55666999999999999999999999999999999999999


Q ss_pred             cCcceEEEEceE
Q 025903          222 RQELTKLRIVDI  233 (246)
Q Consensus       222 RQ~yTrIRI~~I  233 (246)
                      ||+||+|+|++|
T Consensus        83 RQ~~T~vkI~~I   94 (94)
T d2zjro1          83 RQNFTAIKILGI   94 (94)
T ss_dssp             CCBEEEEECCCC
T ss_pred             cCCcEEEEEEEC
Confidence            999999999987