Citrus Sinensis ID: 025954
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 245 | ||||||
| 224093230 | 242 | predicted protein [Populus trichocarpa] | 0.979 | 0.991 | 0.784 | 1e-108 | |
| 224093228 | 242 | predicted protein [Populus trichocarpa] | 0.979 | 0.991 | 0.780 | 1e-107 | |
| 255549325 | 240 | DUF26 domain-containing protein 2 precur | 0.967 | 0.987 | 0.773 | 1e-105 | |
| 224095758 | 242 | predicted protein [Populus trichocarpa] | 0.963 | 0.975 | 0.766 | 1e-105 | |
| 224132594 | 242 | predicted protein [Populus trichocarpa] | 0.967 | 0.979 | 0.756 | 1e-102 | |
| 224132974 | 242 | predicted protein [Populus trichocarpa] | 0.967 | 0.979 | 0.743 | 1e-101 | |
| 224132966 | 214 | predicted protein [Populus trichocarpa] | 0.873 | 1.0 | 0.775 | 5e-96 | |
| 225447358 | 242 | PREDICTED: cysteine-rich repeat secretor | 0.971 | 0.983 | 0.715 | 1e-94 | |
| 225447364 | 252 | PREDICTED: cysteine-rich repeat secretor | 0.902 | 0.876 | 0.719 | 1e-92 | |
| 297739322 | 266 | unnamed protein product [Vitis vinifera] | 0.902 | 0.830 | 0.719 | 2e-92 |
| >gi|224093230|ref|XP_002309844.1| predicted protein [Populus trichocarpa] gi|222852747|gb|EEE90294.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/241 (78%), Positives = 207/241 (85%), Gaps = 1/241 (0%)
Query: 5 SIKFASSLYLLIAFAFFLQTAFGVDPLFHFCSSSENFTANGPYETNLNKLIGYLDYQAPP 64
S FAS L LL AF+ + T FG DPLFHFCS+ ENFTANGPYE+NLNKL YL YQAP
Sbjct: 3 SSNFASFLCLL-AFSLLVHTGFGADPLFHFCSTPENFTANGPYESNLNKLTSYLYYQAPS 61
Query: 65 TGFGKGALGQRPNKAYGLALCRGDVSSSDCKTCIVDASGEIRKRCPYNKAAIIWYDNCLL 124
TGFG G++GQ P++AYGLALCRGD S+SDCKTC+V+A GEIRKRCPYNKAAIIWYDNCL+
Sbjct: 62 TGFGLGSIGQNPDQAYGLALCRGDASTSDCKTCVVEAGGEIRKRCPYNKAAIIWYDNCLV 121
Query: 125 KYTNTEFFGQIDNKNKFYMWNVRVVTEPVSFNQRTKELLTQLAEKAYVTPKLYAVGEMEL 184
KY+N FFGQIDN NKFYMWNV+VV+EPV+FN +TKELLTQLA K TPKLY GEMEL
Sbjct: 122 KYSNNGFFGQIDNGNKFYMWNVKVVSEPVTFNGKTKELLTQLANKVEATPKLYETGEMEL 181
Query: 185 GKSNKLYGLTQCTRDLSSVDCKKCLDGIIRELPSCCDGKEGGRVVSGSCNFRYEIYPFVN 244
G+S KLYGL QCTRDLSS CKKCLDGII ELPSCCDGKEGGRVVSGSCNFRYEIYPFVN
Sbjct: 182 GESTKLYGLVQCTRDLSSAVCKKCLDGIIGELPSCCDGKEGGRVVSGSCNFRYEIYPFVN 241
Query: 245 A 245
A
Sbjct: 242 A 242
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224093228|ref|XP_002309843.1| predicted protein [Populus trichocarpa] gi|222852746|gb|EEE90293.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255549325|ref|XP_002515716.1| DUF26 domain-containing protein 2 precursor, putative [Ricinus communis] gi|223545153|gb|EEF46663.1| DUF26 domain-containing protein 2 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224095758|ref|XP_002310467.1| predicted protein [Populus trichocarpa] gi|222853370|gb|EEE90917.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224132594|ref|XP_002327834.1| predicted protein [Populus trichocarpa] gi|222837243|gb|EEE75622.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224132974|ref|XP_002327925.1| predicted protein [Populus trichocarpa] gi|222837334|gb|EEE75713.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224132966|ref|XP_002327923.1| predicted protein [Populus trichocarpa] gi|222837332|gb|EEE75711.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225447358|ref|XP_002274604.1| PREDICTED: cysteine-rich repeat secretory protein 38-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225447364|ref|XP_002274745.1| PREDICTED: cysteine-rich repeat secretory protein 38-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297739322|emb|CBI28973.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 245 | ||||||
| TAIR|locus:2095662 | 252 | AT3G22060 "AT3G22060" [Arabido | 0.865 | 0.841 | 0.611 | 1.8e-71 | |
| TAIR|locus:2085470 | 258 | AT3G58310 "AT3G58310" [Arabido | 0.971 | 0.922 | 0.485 | 1.6e-56 | |
| TAIR|locus:2065878 | 255 | AT2G31620 "AT2G31620" [Arabido | 0.959 | 0.921 | 0.406 | 7.3e-43 | |
| TAIR|locus:2115728 | 675 | CRK25 "cysteine-rich RLK (RECE | 0.967 | 0.351 | 0.379 | 7.8e-43 | |
| TAIR|locus:2095642 | 256 | AT3G21990 "AT3G21990" [Arabido | 0.865 | 0.828 | 0.418 | 2.5e-42 | |
| TAIR|locus:2095582 | 441 | AT3G21960 [Arabidopsis thalian | 0.832 | 0.462 | 0.425 | 4.2e-40 | |
| TAIR|locus:2095632 | 258 | AT3G22050 "AT3G22050" [Arabido | 0.853 | 0.810 | 0.424 | 1.1e-37 | |
| TAIR|locus:2830202 | 260 | AT3G21945 "AT3G21945" [Arabido | 0.848 | 0.8 | 0.391 | 5.7e-36 | |
| TAIR|locus:2095567 | 263 | AT3G22010 "AT3G22010" [Arabido | 0.848 | 0.790 | 0.405 | 1.2e-35 | |
| TAIR|locus:2121474 | 273 | AT4G20680 "AT4G20680" [Arabido | 0.865 | 0.776 | 0.392 | 3.1e-35 |
| TAIR|locus:2095662 AT3G22060 "AT3G22060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 132/216 (61%), Positives = 163/216 (75%)
Query: 31 LFHFCSSSE-NFTANGPYETNLNKLIGYLDYQAPPTGFGKGALGQRPNKAYGLALCRGDV 89
LFH CS E +FT+ YE+NLN L L Y+ P TGF + G PN GLALCRGD
Sbjct: 35 LFHKCSDIEGSFTSKSLYESNLNNLFSQLSYKVPSTGFAASSTGNTPNNVNGLALCRGDA 94
Query: 90 SSSDCKTCIVDASGEIRKRCPYNKAAIIWYDNCLLKYTNTEFFGQIDNKNKFYMWNVRVV 149
SSSDC++C+ A E+R+RCP NKA I+WYDNCL+KY++T FFG+ID +N+FY++NV+ V
Sbjct: 95 SSSDCRSCLETAIPELRQRCPNNKAGIVWYDNCLVKYSSTNFFGKIDFENRFYLYNVKNV 154
Query: 150 TEPVSFNQRTKELLTQLAEKAYV--TPKLYAVGEMELGKSNKLYGLTQCTRDLSSVDCKK 207
++P +FN +TK LLT+L +KA KL+A GE +GK NKLYGL QCTRDL S+ CK
Sbjct: 155 SDPSTFNSQTKALLTELTKKATTRDNQKLFATGEKNIGK-NKLYGLVQCTRDLKSITCKA 213
Query: 208 CLDGIIRELPSCCDGKEGGRVVSGSCNFRYEIYPFV 243
CL+GII ELP+CCDGKEGGRVV GSCNFRYEIYPFV
Sbjct: 214 CLNGIIGELPNCCDGKEGGRVVGGSCNFRYEIYPFV 249
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| TAIR|locus:2085470 AT3G58310 "AT3G58310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2065878 AT2G31620 "AT2G31620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2115728 CRK25 "cysteine-rich RLK (RECEPTOR-like protein kinase) 25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2095642 AT3G21990 "AT3G21990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2095582 AT3G21960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2095632 AT3G22050 "AT3G22050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2830202 AT3G21945 "AT3G21945" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2095567 AT3G22010 "AT3G22010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121474 AT4G20680 "AT4G20680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 245 | |||
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 9e-28 | |
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 7e-22 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
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Score = 101 bits (254), Expect = 9e-28
Identities = 47/106 (44%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 32 FHFCSSSEN---FTANGPYETNLNKLIGYLDYQA---PPTGFGKGALGQRPNKAYGLALC 85
FH CSS+ + TAN +E+NLN L+ L A GF G G P+ YGLA C
Sbjct: 1 FHLCSSNTSGNYTTANSTFESNLNALLSSLSSNAASSSGKGFAAGTSGAAPDTVYGLAQC 60
Query: 86 RGDVSSSDCKTCIVDASGEIRKRCPYNKAAIIWYDNCLLKYTNTEF 131
RGD+S+SDC++C+ A E+R+ CP K IWYD+C L+Y + F
Sbjct: 61 RGDLSASDCRSCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106
|
This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 245 | |||
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.94 | |
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.93 |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
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Probab=99.94 E-value=4e-27 Score=179.31 Aligned_cols=100 Identities=45% Similarity=0.980 Sum_probs=77.2
Q ss_pred cCcCC-C-CCcc-CCCChHHHHHHHHHHHhhhcCCC---CCccccccCCCCCeEEEEEEccCCCCccchhHHHHHHHHHH
Q 025954 32 FHFCS-S-SENF-TANGPYETNLNKLIGYLDYQAPP---TGFGKGALGQRPNKAYGLALCRGDVSSSDCKTCIVDASGEI 105 (245)
Q Consensus 32 ~~~C~-~-~~~~-~~~s~f~~nl~~ll~~L~~~~~~---~~f~~~~~g~~~~~vygl~qCrgD~s~~~C~~C~~~a~~~i 105 (245)
|+.|+ + .+++ +++++|++||+.||+.|..+++. .+|+++..|.++++||||+||++|+++++|+.||+.|..++
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 67898 3 3466 57888999999999999999764 48999988889999999999999999999999999999999
Q ss_pred hhhCCCccceEEEcceeEEEEecccc
Q 025954 106 RKRCPYNKAAIIWYDNCLLKYTNTEF 131 (245)
Q Consensus 106 ~~~C~~~~~a~i~~~~C~lRYs~~~f 131 (245)
++.|+.+++|+||+++|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999988
|
The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D. |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 245 | ||||
| 3a2e_A | 108 | Crystal Structure Of Ginkbilobin-2, The Novel Antif | 9e-05 |
| >pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal Protein From Ginkgo Biloba Seeds Length = 108 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 245 | |||
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 2e-28 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 3e-26 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 245 | |||
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.96 | |
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.96 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.95 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.95 |
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=187.13 Aligned_cols=105 Identities=23% Similarity=0.440 Sum_probs=96.2
Q ss_pred cceEEEeccccccCchhhhHHHHHHHHHHHHHhccCCcceeeeeeecCCCcceEEEEeecCCCChhhhHHHHHHHHhhcc
Q 025954 138 KNKFYMWNVRVVTEPVSFNQRTKELLTQLAEKAYVTPKLYAVGEMELGKSNKLYGLTQCTRDLSSVDCKKCLDGIIRELP 217 (245)
Q Consensus 138 ~~~~~~~n~~n~~~~~~f~~~l~~ll~~l~~~a~~s~~~fa~~~~~~~~~~~vYglaQC~~Dls~~~C~~CL~~a~~~i~ 217 (245)
.-..+.||.+++++++.|+++|+.||..|+.+++.++.+|+++..+..++++||||+||+||+++++|+.||+.++.+++
T Consensus 4 ~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~ 83 (108)
T 3a2e_A 4 AFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIF 83 (108)
T ss_dssp CEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHH
T ss_pred ceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999887777888877665467899999999999999999999999999999
Q ss_pred ccCCCCcceEEEcCCeeEEEecCCC
Q 025954 218 SCCDGKEGGRVVSGSCNFRYEIYPF 242 (245)
Q Consensus 218 ~~c~~~~g~~v~~~~C~lRY~~~~F 242 (245)
++||+++||+||+++|+||||+++|
T Consensus 84 ~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 84 SICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999998
|
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00