Citrus Sinensis ID: 025975

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYEEGEPGSPRRWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPILFT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEcccccccEEEEEEEEEcccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccEEEEEEEEEccccHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtyyeddevvpeltlrididennnnnkgdylklreyeegepgsprrwscgkvWYWVKLAFFLTSVGLLAAVFIKWvgpffmdkevipiinwetttfstPVLAVLVFASValfptlllpsspsmwvagmtFGYGFGFLLIMSAVAVGIslpyfigshFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALirispfpyiIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPILFT
Flexible Loop (DISEMBL)
mtyyeddevvpeltlrididennnnnkgdylklreyeegepgsprrwsCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPILFT
Low Complexity Region (SEG)
MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYEEGEPGSPRRWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPvlavlvfasvalfptlllpsspsMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPILFT
Disordered region (IsUnstruct)
*********************************************RWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPILF*
Disordered Region (DISOPRED)
*TY****EVVPEL***************************************WYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPILFT
Disordered Region (DISEMBL)
********VVPELTLRIDIDENNNNNKGDYLKLREY*********RWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPILFT
Disordered Region (DISPRO)
*TYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYE****GSPRRWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPILFT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYEEGEPGSPRRWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPILFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q55909	209	TVP38/TMEM64 family membr	N/A	no	0.465	0.545	0.302	0.0001

>sp|Q55909|Y305_SYNY3 TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 5/119 (4%)

Query: 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILR 176
           LP S     AG+ FG   G + +     +G +  + +G  +L R  GW+ K        +
Sbjct: 35  LPGSILTLGAGVVFGVILGSIYVFIGATLGATAAFLVG-RYLAR--GWVAKKIAGNQKFK 91

Query: 177 AAGEGNWFHQFRTVALIRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
           A  E       + V L R+SP FP+ + NY    T+V    Y +GSL GM+P   + +Y
Sbjct: 92  AIDEAVGKEGLKIVILTRLSPVFPFNLLNYAYGITNVSLKDYVIGSL-GMIPGTIMYVY 149

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
224071615	299	predicted protein [Populus trichocarpa]	0.942	0.772	0.715	2e-95
255537153	306	conserved hypothetical protein [Ricinus	0.922	0.738	0.725	5e-93
224058645	297	predicted protein [Populus trichocarpa]	0.955	0.787	0.730	3e-89
359474282	293	PREDICTED: TVP38/TMEM64 family membrane	0.893	0.747	0.686	7e-89
356513717	302	PREDICTED: TVP38/TMEM64 family membrane	0.934	0.758	0.662	2e-86
356565329	302	PREDICTED: uncharacterized protein LOC10	0.942	0.764	0.672	3e-86
357476997	313	TVP38/TMEM64 family membrane protein slr	0.910	0.712	0.640	5e-83
15221330	303	SNARE associated Golgi protein family [A	0.942	0.762	0.641	2e-82
356497185	294	PREDICTED: TVP38/TMEM64 family membrane	0.955	0.795	0.638	2e-81
297803836	296	hypothetical protein ARALYDRAFT_492585 [	0.955	0.790	0.616	6e-80

>gi|224071615|ref|XP_002303542.1| predicted protein [Populus trichocarpa] gi|222840974|gb|EEE78521.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 176/246 (71%), Positives = 202/246 (82%), Gaps = 15/246 (6%)

Query: 1   MTYYEDDEVVPELTLRIDID--ENNNNNKGDYLKLREYEEGEPGSPRRWS-CG------- 50
           MT+YEDD VVPEL + ++ D  +  +N++GDY+ LR+    E G+  R + CG       
Sbjct: 1   MTFYEDDSVVPELIMSMEGDKIDGGDNSEGDYVNLRD----ENGAGERCNLCGFYWGFGW 56

Query: 51  -KVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASV 109
              WYWVKLA   T +GLLAA  + WVGPF MDKE+IPI+NWET TFSTPVLA+L+FASV
Sbjct: 57  SVFWYWVKLALLFTFIGLLAAACVMWVGPFLMDKEIIPIMNWETRTFSTPVLAILLFASV 116

Query: 110 ALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYP 169
           ALFPTLLLPSSPSMWVAGMTFGYG GFLLI++A AVG+SLPY IGS FLH+IQGWLEKYP
Sbjct: 117 ALFPTLLLPSSPSMWVAGMTFGYGIGFLLIITAAAVGVSLPYLIGSLFLHKIQGWLEKYP 176

Query: 170 KKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEI 229
           K+AAILRAAGEGNWFHQFR V LIRISPFPYI+YNYCAVAT+VKYGPY LGSLVGMVPEI
Sbjct: 177 KRAAILRAAGEGNWFHQFRAVTLIRISPFPYILYNYCAVATNVKYGPYLLGSLVGMVPEI 236

Query: 230 FVTIYT 235
           FV+IYT
Sbjct: 237 FVSIYT 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537153|ref|XP_002509643.1| conserved hypothetical protein [Ricinus communis] gi|223549542|gb|EEF51030.1| conserved hypothetical protein [Ricinus communis]

 Score =  346 bits (887), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 193/237 (81%), Gaps = 11/237 (4%)

Query: 10  VPELTLRIDIDENNNNN-KGDYLKLREYE----------EGEPGSPRRWSCGKVWYWVKL 58
           VP L    +   ++ +N KGDY+KL + E          EG      +W    VWYW KL
Sbjct: 13  VPHLRTTTETGNHDEDNIKGDYVKLGDCEVEEERLVGVIEGSSFCLWKWRGSVVWYWFKL 72

Query: 59  AFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLP 118
           A   T +GLLAAVF+KWVGPFFMDKE+IPIINWETTTFSTPVLA+LVFASVALFP++LLP
Sbjct: 73  ALLFTCLGLLAAVFLKWVGPFFMDKELIPIINWETTTFSTPVLAILVFASVALFPSILLP 132

Query: 119 SSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAA 178
           S+PSMWVAG+TFGYGFGFLLI+SA AVG+SLPYFIGS FLH+IQGWLEKYPKKAAILRAA
Sbjct: 133 STPSMWVAGLTFGYGFGFLLIISASAVGVSLPYFIGSLFLHKIQGWLEKYPKKAAILRAA 192

Query: 179 GEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
           GEGNWFHQFR V  IRISPFPYI+YNYCAVAT+VKYGPY LGSL+GMVPEIFV IYT
Sbjct: 193 GEGNWFHQFRAVMFIRISPFPYILYNYCAVATNVKYGPYILGSLIGMVPEIFVAIYT 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058645|ref|XP_002299582.1| predicted protein [Populus trichocarpa] gi|222846840|gb|EEE84387.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 202/241 (83%), Gaps = 7/241 (2%)

Query: 1   MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYEEGEPGSPRRWSC-----GKV-WY 54
           MTYYEDD VV ++ +R++ D+ ++N+KGDY+ LR+ E G       + C     G V WY
Sbjct: 1   MTYYEDDSVVLDVRMRMEGDKIDDNSKGDYVNLRD-ENGAGERCNHFGCCWGLGGSVFWY 59

Query: 55  WVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPT 114
           WVKLA   T  GLLAA  ++WVGPF MDKE+IPIINWETTTFSTPVL VL+FASVAL PT
Sbjct: 60  WVKLAVTFTFFGLLAAACVEWVGPFLMDKEIIPIINWETTTFSTPVLVVLLFASVALLPT 119

Query: 115 LLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAI 174
           LLLPSSPSMWVAGMTFGYGFGFLLI++A AVG+SLPYFIGS FLH+I+GW +KYPK+AAI
Sbjct: 120 LLLPSSPSMWVAGMTFGYGFGFLLIITAAAVGVSLPYFIGSLFLHKIRGWFDKYPKRAAI 179

Query: 175 LRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
           LRAAGEGNWFHQFR VALIRISPFPYI+YNYCAVAT+VKYGPYFLGSL GMVPEIFV +Y
Sbjct: 180 LRAAGEGNWFHQFRAVALIRISPFPYILYNYCAVATNVKYGPYFLGSLAGMVPEIFVAMY 239

Query: 235 T 235
           T
Sbjct: 240 T 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474282|ref|XP_002274997.2| PREDICTED: TVP38/TMEM64 family membrane protein slr0305 [Vitis vinifera] gi|297742653|emb|CBI34802.3| unnamed protein product [Vitis vinifera]

 Score =  332 bits (852), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 164/239 (68%), Positives = 195/239 (81%), Gaps = 20/239 (8%)

Query: 5   EDDEVVPELTLRIDIDENNNNNKGDYLKLRE----YEEG----EPGSPRRWSCGKVWYWV 56
           +D  VVPELTLR+          GDY+KLR+     EEG    EP +PRR   G +W+W 
Sbjct: 8   DDGGVVPELTLRM----------GDYVKLRQPAECEEEGFGDVEPSTPRRR--GLIWWWA 55

Query: 57  KLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLL 116
           K+A     +G+LA VF+KWVGPFFMDKE++PIINWETTTFSTPVLA+++F SVALFPTLL
Sbjct: 56  KVALLCVVLGVLAGVFLKWVGPFFMDKELMPIINWETTTFSTPVLALVIFGSVALFPTLL 115

Query: 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILR 176
           LPS+PSMWVAGMTFGYG GFLLI++ VAVG+SLPY IGS F H+IQGWLEKYPKKA+I+R
Sbjct: 116 LPSTPSMWVAGMTFGYGLGFLLIIAGVAVGVSLPYIIGSLFHHKIQGWLEKYPKKASIIR 175

Query: 177 AAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
            AGEGNWFHQFR V LIR+SPFPYI++NYC+VAT+VKYGPY +GSL+G+VPEIFV IYT
Sbjct: 176 LAGEGNWFHQFRAVTLIRVSPFPYILFNYCSVATNVKYGPYIMGSLIGVVPEIFVAIYT 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513717|ref|XP_003525557.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 165/249 (66%), Positives = 192/249 (77%), Gaps = 20/249 (8%)

Query: 1   MTYYEDD------EVVPELTLRIDIDENNNNNKGDYLKLREYEE--------GEPGSPRR 46
           MTYYE+D      EVVP++TL I  D++N    GDY+KLR             EP  P  
Sbjct: 1   MTYYENDGGGRREEVVPDVTLTIQSDDSN----GDYVKLRANNNDGSPPGAAAEPSPPTI 56

Query: 47  WSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVF 106
            +   VWYWVKL      +G LA V + WVGP+F+DKE+IPIINWET TFSTPVL VLVF
Sbjct: 57  RAA--VWYWVKLVVLFLFLGFLAVVVLVWVGPYFIDKEIIPIINWETETFSTPVLTVLVF 114

Query: 107 ASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLE 166
            SVA+FPTLLLPS+PSMWVAGMTFGYGFGFLLI+SA A+G+SLP+ IG  F H+I+GWLE
Sbjct: 115 TSVAVFPTLLLPSTPSMWVAGMTFGYGFGFLLIISAAAIGVSLPFVIGKLFHHKIEGWLE 174

Query: 167 KYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMV 226
           KYPKKA+ILR+AG G+WFHQFR VA IRISPFPY+I+NYCAVAT+VKYGPY +GSLVGMV
Sbjct: 175 KYPKKASILRSAGGGSWFHQFRAVAFIRISPFPYLIFNYCAVATNVKYGPYMVGSLVGMV 234

Query: 227 PEIFVTIYT 235
           PEIFV IYT
Sbjct: 235 PEIFVAIYT 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565329|ref|XP_003550894.1| PREDICTED: uncharacterized protein LOC100788409 [Glycine max]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 166/247 (67%), Positives = 193/247 (78%), Gaps = 16/247 (6%)

Query: 1   MTYYEDD------EVVPELTLRIDIDENNNNNKGDYLKLR-EYEEGEP-GSPRRWS---- 48
           MTYYE D      EVVP++TL I  D+ N    GDY+KLR   ++G P G+    S    
Sbjct: 1   MTYYETDGGGRREEVVPDVTLTIQSDDGN----GDYVKLRANADDGSPPGAAAELSPPTL 56

Query: 49  CGKVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFAS 108
              VWYWVKL      +G LA V + WVGP+F+DKE+IPIINWET TFSTPVL VLVFAS
Sbjct: 57  RAAVWYWVKLVVLFLFLGFLAVVVLVWVGPYFIDKEIIPIINWETETFSTPVLTVLVFAS 116

Query: 109 VALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY 168
           VA+FPTLLLPS+PSMWVAGMTFGYGFGFLLI+SA A+G+SLP+ IG  F H+I+GWLEKY
Sbjct: 117 VAIFPTLLLPSTPSMWVAGMTFGYGFGFLLIISAAAIGVSLPFVIGKLFHHKIEGWLEKY 176

Query: 169 PKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPE 228
           PKKA+ILR+AG G+WFHQFR VA IRISPFPY+I+NYCAVA +VKYGPY +GSLVGMVPE
Sbjct: 177 PKKASILRSAGGGSWFHQFRAVAFIRISPFPYLIFNYCAVAINVKYGPYIVGSLVGMVPE 236

Query: 229 IFVTIYT 235
           IFV IYT
Sbjct: 237 IFVAIYT 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476997|ref|XP_003608784.1| TVP38/TMEM64 family membrane protein slr0305 [Medicago truncatula] gi|355509839|gb|AES90981.1| TVP38/TMEM64 family membrane protein slr0305 [Medicago truncatula]

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 153/239 (64%), Positives = 187/239 (78%), Gaps = 16/239 (6%)

Query: 8   EVVPELTLRIDIDENNNNNKGDYLKLREYEEG-----------EPGSPRRWSCGKVWYWV 56
           EVV ++T+ I+ D   ++NKGDY+KL    +            E   P R S   VWYWV
Sbjct: 20  EVVSDVTITIEAD---DDNKGDYIKLIPGSDECLPLTAVEMVEECSLPSRRSV--VWYWV 74

Query: 57  KLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLL 116
           K+     S+G LA   +KWVGP+ +DKEVIPIINWET TFS PVL +L+FASVA+FPT+L
Sbjct: 75  KMVLLFLSLGFLAVAVLKWVGPYLIDKEVIPIINWETETFSPPVLTILLFASVAIFPTIL 134

Query: 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILR 176
           LPS+PSMWVAG+T GYGFGFLLI++A A+G+SLP+ IGS F H+I+GWLEKYPKKA+IL+
Sbjct: 135 LPSTPSMWVAGVTLGYGFGFLLIITAAAIGVSLPFIIGSIFHHKIEGWLEKYPKKASILK 194

Query: 177 AAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
           +AG GNWFHQFR VALIRISPFPY+++NYCAVAT+VKYGPY +GSLVGMVPEIFV IYT
Sbjct: 195 SAGAGNWFHQFRAVALIRISPFPYMVFNYCAVATNVKYGPYIIGSLVGMVPEIFVAIYT 253

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221330|ref|NP_172707.1| SNARE associated Golgi protein family [Arabidopsis thaliana] gi|34222066|gb|AAQ62869.1| At1g12450 [Arabidopsis thaliana] gi|62320872|dbj|BAD93843.1| hypothetical protein [Arabidopsis thaliana] gi|332190763|gb|AEE28884.1| SNARE associated Golgi protein family [Arabidopsis thaliana]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/243 (64%), Positives = 185/243 (76%), Gaps = 12/243 (4%)

Query: 1   MTYYED-DEVVPELTLRIDIDENNNNNKGDYLKLR----EYEEGEPGSPRRWSCGKV--- 52
           MTY    D  VPEL LR++ D +N    GDYLKLR    E +EG      R   G V   
Sbjct: 1   MTYSNGVDGTVPELKLRVEEDSDN----GDYLKLRGGSNEEDEGSSAESSRCPIGSVTSV 56

Query: 53  WYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALF 112
           W+WVKL   +  +G LA V IKWVGPF ++KE+IP INW   TFS PVL +L+FASVALF
Sbjct: 57  WFWVKLISLVVCLGSLAFVIIKWVGPFLIEKELIPFINWVRNTFSIPVLGLLLFASVALF 116

Query: 113 PTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKA 172
           P++LLPSSPSMW+AG+TFGYG GFLLI+SA ++G++LP+ IG  FLH++Q WL+KYPKKA
Sbjct: 117 PSILLPSSPSMWMAGLTFGYGKGFLLILSAASIGVTLPFLIGHLFLHKMQEWLKKYPKKA 176

Query: 173 AILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVT 232
           AILRAAGEG WFHQF+ V LIR+SPFPYIIYNYCA+AT V YGPY LGSLVGMVPEIFV+
Sbjct: 177 AILRAAGEGTWFHQFQAVTLIRVSPFPYIIYNYCALATGVHYGPYILGSLVGMVPEIFVS 236

Query: 233 IYT 235
           IYT
Sbjct: 237 IYT 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497185|ref|XP_003517443.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Glycine max]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/235 (63%), Positives = 185/235 (78%), Gaps = 1/235 (0%)

Query: 1   MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYEEGEPGSPRRWSCGKVWYWVKLAF 60
           MTY+E+D +  +   R+   E N++  G+Y+KL    + E     R    ++WYWVKL  
Sbjct: 1   MTYFEEDAINDDGD-RVRDVERNHDGGGEYVKLVWDPQPEAVPTHRGGSSRLWYWVKLVL 59

Query: 61  FLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSS 120
               +GLLA V  +WV P F++K +IPII WET TFS+PVLAVL+FAS+ALFPTL+LPSS
Sbjct: 60  CFLCLGLLALVAFEWVAPLFIEKVIIPIIKWETNTFSSPVLAVLLFASIALFPTLILPSS 119

Query: 121 PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGE 180
           PSMWVAG+ FGYGFGFLLI+SA AVG+SLP+ IGS F  +I+GWLEKYPK+A++LR+AG 
Sbjct: 120 PSMWVAGLKFGYGFGFLLIISAAAVGVSLPFLIGSIFHSKIEGWLEKYPKRASVLRSAGG 179

Query: 181 GNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
           GNWFHQFR VALIR+SPFPYII+NYCAVAT+VKY PY LGSLVGMVPEIFV+IYT
Sbjct: 180 GNWFHQFRAVALIRVSPFPYIIFNYCAVATNVKYWPYLLGSLVGMVPEIFVSIYT 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803836|ref|XP_002869802.1| hypothetical protein ARALYDRAFT_492585 [Arabidopsis lyrata subsp. lyrata] gi|297315638|gb|EFH46061.1| hypothetical protein ARALYDRAFT_492585 [Arabidopsis lyrata subsp. lyrata]

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 146/237 (61%), Positives = 182/237 (76%), Gaps = 3/237 (1%)

Query: 1   MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLRE--YEEGEPGSPRRWSCGKVWYWVKL 58
           MT  ED++ V EL +R++ D++N+  KG Y+KL E   ++ E     +    + W+WVKL
Sbjct: 1   MTLPEDEKPVLELRVRVE-DDDNDEKKGPYVKLSEGLKKKQEEEEEEKIDSSRFWFWVKL 59

Query: 59  AFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLP 118
           +     +  LA V   W+GP  MDKE+IP+I WE  TF+ PV  +LVFASVA+FPT+LLP
Sbjct: 60  SLLFAFLATLAVVGYIWIGPLIMDKELIPLIQWEIRTFTHPVCGLLVFASVAIFPTILLP 119

Query: 119 SSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAA 178
           S+PSMW+AGMTFGYG+GFLLI+SA AVG+SLPYFIG  F H+IQGWLE+YP +AA+LRAA
Sbjct: 120 STPSMWIAGMTFGYGYGFLLIISAAAVGVSLPYFIGQLFCHKIQGWLERYPDQAAVLRAA 179

Query: 179 GEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
           GEGNW HQFR V LIRISPFPYI+YNYC+VAT VKYGPY  GSL+GMVPE+FV IYT
Sbjct: 180 GEGNWLHQFRLVTLIRISPFPYILYNYCSVATRVKYGPYITGSLLGMVPEVFVAIYT 236

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2034710	303	AT1G12450 "AT1G12450" [Arabido	0.942	0.762	0.567	2.1e-68
TAIR|locus:2132669	296	AT4G22850 "AT4G22850" [Arabido	0.942	0.780	0.533	9.4e-66
TAIR|locus:2118096	306	AT4G12000 [Arabidopsis thalian	0.951	0.761	0.506	7.9e-62
TAIR|locus:2056246	320	AT2G02370 "AT2G02370" [Arabido	0.751	0.575	0.451	2.2e-43
TAIR|locus:2017769	344	AT1G22850 "AT1G22850" [Arabido	0.465	0.331	0.341	7.1e-09
TAIR|locus:2014530	274	AT1G03260 [Arabidopsis thalian	0.424	0.379	0.272	0.00026

TAIR|locus:2034710 AT1G12450 "AT1G12450" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 138/243 (56%), Positives = 163/243 (67%)

Query:     1 MTYYED-DEVVPELTLRIDIDENNNNNKGDYLKLR----EYEEGEPGSPRRWSCGKV--- 52
             MTY    D  VPEL LR++ D +N    GDYLKLR    E +EG      R   G V   
Sbjct:     1 MTYSNGVDGTVPELKLRVEEDSDN----GDYLKLRGGSNEEDEGSSAESSRCPIGSVTSV 56

Query:    53 WYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPXXXXXXXXXXXXX 112
             W+WVKL   +  +G LA V IKWVGPF ++KE+IP INW   TFS P             
Sbjct:    57 WFWVKLISLVVCLGSLAFVIIKWVGPFLIEKELIPFINWVRNTFSIPVLGLLLFASVALF 116

Query:   113 XXXXXXXXXXMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKA 172
                       MW+AG+TFGYG GFLLI+SA ++G++LP+ IG  FLH++Q WL+KYPKKA
Sbjct:   117 PSILLPSSPSMWMAGLTFGYGKGFLLILSAASIGVTLPFLIGHLFLHKMQEWLKKYPKKA 176

Query:   173 AILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVT 232
             AILRAAGEG WFHQF+ V LIR+SPFPYIIYNYCA+AT V YGPY LGSLVGMVPEIFV+
Sbjct:   177 AILRAAGEGTWFHQFQAVTLIRVSPFPYIIYNYCALATGVHYGPYILGSLVGMVPEIFVS 236

Query:   233 IYT 235
             IYT
Sbjct:   237 IYT 239

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132669 AT4G22850 "AT4G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 128/240 (53%), Positives = 158/240 (65%)

Query:     1 MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREY-EEGEPGSPRR----WSCGKVWYW 55
             MT  ED++ V EL +R++ D+     KG Y+KL E  E+G+     +        + W+W
Sbjct:     1 MTVTEDEKPVLELLVRVEDDDE----KGPYVKLSEVLEKGQESEQEKEEEKTDSSRFWFW 56

Query:    56 VKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPXXXXXXXXXXXXXXXX 115
             VKL+     +  LA V   W+GP  MDKE+IP+I WE  TF+ P                
Sbjct:    57 VKLSLLFAFLAALAVVGYIWIGPLIMDKELIPLIQWEIRTFTHPVCGLLVFASVAIFPTI 116

Query:   116 XXXXXXXMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAIL 175
                    MW+AGMTFGYG+GFLLI+SA AVG+SLPYFIG  F H+IQGWLE+YP +AA+L
Sbjct:   117 LLPSTPSMWIAGMTFGYGYGFLLIISAAAVGVSLPYFIGQLFCHKIQGWLERYPDQAAVL 176

Query:   176 RAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235
             RAAGEGNW HQF  V LIRISPFPYI+YNYC+VAT VKYGPY  GSL+GMVPE+FV IYT
Sbjct:   177 RAAGEGNWLHQFLLVTLIRISPFPYILYNYCSVATRVKYGPYITGSLLGMVPEVFVAIYT 236

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118096 AT4G12000 [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 125/247 (50%), Positives = 158/247 (63%)

Query:     1 MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKL--------REYEEGEPGSPRRWS-CGK 51
             MTY+E+D+ V E   R+ ++E+  +  G Y+KL        +E E+    SP   S CG+
Sbjct:     1 MTYHEEDDTVSEF--RVRVEEDGVDKLGHYVKLTEDFEVHRQETEQESSSSPSSSSSCGQ 58

Query:    52 ---VWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPXXXXXXXXX 108
                VW+W+KL  F T +  L     KW+ P  MDKE+IP+I WE  TF+ P         
Sbjct:    59 KRSVWFWIKLGLFFTFLTALGLAGYKWLYPLIMDKELIPLIKWEMETFTHPVCGILVFAS 118

Query:   109 XXXXXXXXXXXXXXMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY 168
                           MWVAG+TFGY +G LL + AVA+G+SLPYFI   FL++IQGWLE+Y
Sbjct:   119 VSLFPVILIPTTPSMWVAGITFGYFYGLLLTLPAVAIGVSLPYFISYLFLNKIQGWLERY 178

Query:   169 PKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPE 228
             P +AA+LRAAG G+WFHQFR V LIRISPFP+ +YNYCAVAT VK+GPY  GSLVGM PE
Sbjct:   179 PDQAAMLRAAGGGSWFHQFRAVTLIRISPFPFAVYNYCAVATRVKFGPYMAGSLVGMAPE 238

Query:   229 IFVTIYT 235
             IFV IYT
Sbjct:   239 IFVAIYT 245

GO:0005886 "plasma membrane" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2056246 AT2G02370 "AT2G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 84/186 (45%), Positives = 113/186 (60%)

Query:    51 KVWYWVKLAFFLTSVGLLAA-VFIKWVGPFFMDKEVIPIINWETTTFSTPXXXXXXXXXX 109
             K  +W+K A  + +V LL   VF KW  PF   K +IPI+ WE T F  P          
Sbjct:    51 KFMWWLK-ALGICAVALLLTLVFGKWGVPFVFQKVLIPILQWEATAFGRPMLAIVLVVSL 109

Query:   110 XXXXXXXXXXXXXMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYP 169
                          MW+AGM FGYG GF++IM    +G+ LPY IG  F  R+  WL+++P
Sbjct:   110 ALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYLIGLMFRDRLHQWLKRWP 169

Query:   170 KKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEI 229
             ++AA+LR A EG+WFHQFR VA+ R+SPFPY I+NY  V T +++ PYF GS+ GM+PE 
Sbjct:   170 RQAAVLRLAAEGSWFHQFRVVAIFRVSPFPYTIFNYAIVVTSMRFWPYFFGSIAGMIPEA 229

Query:   230 FVTIYT 235
             F+ IY+
Sbjct:   230 FIYIYS 235

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2017769 AT1G22850 "AT1G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 7.1e-09, P = 7.1e-09
 Identities = 41/120 (34%), Positives = 62/120 (51%)

Query:   126 AGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLH-RIQGWLEKYPKKAAILRAAGEGNWF 184
             AG+ FG   G +++  +  +  S+ + I  +F   RI   +E   K  AI +A GE    
Sbjct:   177 AGLLFGPLIGTIIVSISGTMAASVAFLIARYFARERILKLVEDNKKFLAIDKAIGENG-- 234

Query:   185 HQFRTVALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPIL 243
               FR V L+R+SP  P+ + NY    T VK+ PY LGS +GM+P  +  +    FG  I+
Sbjct:   235 --FRVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVLGSWLGMLPGSWAYVSAGAFGRAII 292

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2014530 AT1G03260 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00026, P = 0.00026
 Identities = 30/110 (27%), Positives = 50/110 (45%)

Query:   127 GMTFGYGFGFLLIMSAVAVGISLPYFIGSHF-LHRIQGWLEKYPKKAAILRAAGEGNWFH 185
             G  FG   GF+       +G +  + +G       +   ++ YPK  A+  A  +     
Sbjct:    77 GYLFGLPVGFVADSLGATLGATAAFLLGRTIGKSYVTSKIKHYPKFQAVSVAIQKSG--- 133

Query:   186 QFRTVALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
              F+ V L+R+ P  P+ + NY    T V+ G Y L + +GM+P  F  +Y
Sbjct:   134 -FKIVLLLRVVPILPFNMLNYLLSVTPVRLGEYMLATWLGMMPITFALVY 182


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.144   0.479    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      245       222   0.00096  112 3  11 22  0.46    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  211 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.51u 0.25s 20.76t   Elapsed:  00:00:01
  Total cpu time:  20.51u 0.25s 20.76t   Elapsed:  00:00:01
  Start:  Sat May 11 10:37:40 2013   End:  Sat May 11 10:37:41 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
pfam09335	123	pfam09335, SNARE_assoc, SNARE associated Golgi pro	2e-13
COG0398	223	COG0398, COG0398, Uncharacterized conserved protei	6e-08

>gnl|CDD|220186 pfam09335, SNARE_assoc, SNARE associated Golgi protein

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILR 176
           LP +  +  AG  FG   GFL+ +    +G  L Y +G +   R         K    L+
Sbjct: 1   LPGTVLLIAAGALFGPWLGFLVALLGALLGSLLAYLLGRYLGRRALRRRLLKEKAFQRLQ 60

Query: 177 AAGEGNWFHQFRTVALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
                   + F+ + L+R+ P  P  + NY A  + V +  + LG+ +G++P   + +Y
Sbjct: 61  RVERLVERYGFKALLLLRLLPGVPRDLVNYVAGLSRVSFRRFLLGTFLGILPWALLYVY 119

This is a family of SNARE associated Golgi proteins. The yeast member of this family localises with the t-SNARE Tlg2. Length = 123

>gnl|CDD|223475 COG0398, COG0398, Uncharacterized conserved protein [Function unknown]

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 34/173 (19%), Positives = 71/173 (41%), Gaps = 9/173 (5%)

Query: 65  VGLLAAVFIKWVGPFFMDKEVIPIINW-ETTTFSTPVLAVLVFASVALFPTLLLPSSPSM 123
           + L   + I ++G   +  +   +  W +      P++  ++   VA  P  ++P S   
Sbjct: 15  LFLGVIIGIIYLGLLVLLLDPETLREWIQAYGALGPLVFFILLYLVATLP--IIPGSILT 72

Query: 124 WVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLH-RIQGWLEKYPKKAAILRAAGEGN 182
              G+ FG   GFL  +     G +L + +  +     +  ++    K   I        
Sbjct: 73  LAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVLKFVGGKEKVQRIDAGLERNG 132

Query: 183 WFHQFRTVALIRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234
           ++     + L+R+ P FP+ + NY A  T + +  + + +L+G +P   V  Y
Sbjct: 133 FW----AILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTY 181

Length = 223

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
COG0398	223	Uncharacterized conserved protein [Function unknow	99.97
PF09335	123	SNARE_assoc: SNARE associated Golgi protein; Inter	99.89
COG0586	208	DedA Uncharacterized membrane-associated protein [	99.8
PRK10847	219	hypothetical protein; Provisional	99.78
KOG3140	275	consensus Predicted membrane protein [Function unk	99.49
COG1238	161	Predicted membrane protein [Function unknown]	99.37
PF06695	121	Sm_multidrug_ex: Putative small multi-drug export	95.57
PRK01844	72	hypothetical protein; Provisional	91.2
PRK00523	72	hypothetical protein; Provisional	88.25
TIGR02359	160	thiW thiW protein. Levels of thiamine pyrophosphat	83.6
COG3763	71	Uncharacterized protein conserved in bacteria [Fun	83.25
PRK09609	312	hypothetical protein; Provisional	80.33

>COG0398 Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=6e-29  Score=216.83  Aligned_cols=152  Identities=20%  Similarity=0.349  Sum_probs=133.9

Q ss_pred             hhhHHHHHHHh-hccchhHHHHHHHHHHhhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025975           82 DKEVIPIINWE-TTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR  160 (245)
Q Consensus        82 ~~~l~~l~~w~-~~~~~~pv~~ill~~~~~~~p~~~lP~~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~  160 (245)
                      ..+.+.+.+|+ +.+.++|+.+.+++...+.+  .++|++++++++|++||++.|++++++|+++||+++|+++|++|++
T Consensus        32 ~~~~~~l~~~i~~~g~~~pl~~fil~~l~~~~--~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~  109 (223)
T COG0398          32 LLDPETLREWIQAYGALGPLVFFILLYLVATL--PIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRD  109 (223)
T ss_pred             ccCHHHHHHHHHHcCchHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34455667885 77899998854444444343  4589999999999999999999999999999999999999999998


Q ss_pred             -HHHhhhhchHHHHHHHHHhcCCCchhHHHhHHhhccc-cchhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhh
Q 025975          161 -IQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVF  238 (245)
Q Consensus       161 -v~~~l~~~~~~~~l~~~~~~~~w~~g~~~v~l~Rl~P-~P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~  238 (245)
                       ++++.+++++.+++++..+++    |++.++++|++| +|++++||+||++++|+++|.++|.+|++|++++|+++|+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~----g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~~  185 (223)
T COG0398         110 WVLKFVGGKEKVQRIDAGLERN----GFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSA  185 (223)
T ss_pred             HHHHHhcccHHHHHHHHHHHhC----ChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence             888988888899999999875    889999999999 79999999999999999999999999999999999999964


Q ss_pred             h
Q 025975          239 G  239 (245)
Q Consensus       239 l  239 (245)
                      .
T Consensus       186 ~  186 (223)
T COG0398         186 F  186 (223)
T ss_pred             H
Confidence            3

>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins

Probab=99.89  E-value=3.3e-22  Score=157.02  Aligned_cols=118  Identities=29%  Similarity=0.452  Sum_probs=105.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhhhhchHHHH---HHHHHhcCCCchhHHHhHH
Q 025975          117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAA---ILRAAGEGNWFHQFRTVAL  192 (245)
Q Consensus       117 lP~~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~-v~~~l~~~~~~~~---l~~~~~~~~w~~g~~~v~l  192 (245)
                      +|++++++++|++||++.|++++.+|+++|+.++|++||+++++ .+++..++++.++   .++..++    ||...+++
T Consensus         1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~l~~   76 (123)
T PF09335_consen    1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQK----YGFWVLFL   76 (123)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhh----hhHHHHHH
Confidence            59999999999999999999999999999999999999999965 7666655555555   5555554    58999999


Q ss_pred             hhccc-cchhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhh
Q 025975          193 IRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVF  238 (245)
Q Consensus       193 ~Rl~P-~P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~  238 (245)
                      .|++| +|++++||++|++++|+++|+.++++|.+|++.+++++|+.
T Consensus        77 ~~~~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~~  123 (123)
T PF09335_consen   77 SRFIPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGYL  123 (123)
T ss_pred             HHHHHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999 69999999999999999999999999999999999999973

The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].

>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]

Probab=99.80  E-value=1.4e-18  Score=150.19  Aligned_cols=143  Identities=15%  Similarity=0.150  Sum_probs=119.4

Q ss_pred             chhHHHHHHHHHHhhhhccccCChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhhh---
Q 025975           96 FSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMT-----FGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLE---  166 (245)
Q Consensus        96 ~~~pv~~ill~~~~~~~p~~~lP~~~l~~~aG~l-----FG~~~G~l~~~~g~~lGa~l~f~igR~~g~~-v~~~l~---  166 (245)
                      +..+..++..+.....+...++|++++++++|++     ++++...+.+++|+++|+.+.|++||++|++ .+++.+   
T Consensus        15 ~~~~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~   94 (208)
T COG0586          15 LGYLGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRL   94 (208)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhcc
Confidence            3344666666655434444569999999999998     5567889999999999999999999999988 555544   


Q ss_pred             -hchHHHHHHHHHhcCCCchhHHHhHHhhccccchhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhhhhhh
Q 025975          167 -KYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPI  242 (245)
Q Consensus       167 -~~~~~~~l~~~~~~~~w~~g~~~v~l~Rl~P~P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~l~~l  242 (245)
                       ++++.++-++.++|    ||.+++++.|++|.-+++++..||+++||+++|.+.+++|.+.|..++++.|..+++-
T Consensus        95 ~~~~~l~~a~~~f~r----~G~~~vf~~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~  167 (208)
T COG0586          95 LKRKKLDKAELLFER----HGLFAIFLGRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEV  167 (208)
T ss_pred             CCHHHHHHHHHHHHH----cCchhhhhhcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             34456666677776    6899999999999889999999999999999999999999999999999999988753

>PRK10847 hypothetical protein; Provisional

Probab=99.78  E-value=3.6e-18  Score=148.64  Aligned_cols=145  Identities=19%  Similarity=0.237  Sum_probs=114.2

Q ss_pred             ccchhH-HHHHHHHHHhhhhccccCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHh
Q 025975           94 TTFSTP-VLAVLVFASVALFPTLLLPSSPSMWVAGMTFG-------YGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGW  164 (245)
Q Consensus        94 ~~~~~p-v~~ill~~~~~~~p~~~lP~~~l~~~aG~lFG-------~~~G~l~~~~g~~lGa~l~f~igR~~g~~-v~~~  164 (245)
                      .+.|++ +++++.+....+.+..++|++.+.+++|++.+       .+..++++++|+++|+.++|++||++|++ +.++
T Consensus        25 ~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~  104 (219)
T PRK10847         25 YGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLFSNP  104 (219)
T ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhcc
Confidence            455554 35555554432223345899999999998865       45678999999999999999999999998 4432


Q ss_pred             hh---hchHHHHHHHHHhcCCCchhHHHhHHhhccccchhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhhhhh
Q 025975          165 LE---KYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLP  241 (245)
Q Consensus       165 l~---~~~~~~~l~~~~~~~~w~~g~~~v~l~Rl~P~P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~l~~  241 (245)
                      .+   ++++.++.++.++|    ||.+.+++.|++|.-+++++++||+++||+++|++.+.+|.++|+.+++++|..+++
T Consensus       105 ~~~~~~~~~l~~~~~~~~r----~G~~~v~i~RfiP~~R~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~Gy~~g~  180 (219)
T PRK10847        105 NSKIFRRSYLDKTHQFYEK----HGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGT  180 (219)
T ss_pred             ccccCCHHHHHHHHHHHHH----cCCEEEEeeCCccchHhHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            22   22346666677776    588999999999976788999999999999999999999999999999999998765


Q ss_pred             h
Q 025975          242 I  242 (245)
Q Consensus       242 l  242 (245)
                      .
T Consensus       181 ~  181 (219)
T PRK10847        181 L  181 (219)
T ss_pred             C
Confidence            3

>KOG3140 consensus Predicted membrane protein [Function unknown]

Probab=99.49  E-value=4.8e-14  Score=126.16  Aligned_cols=131  Identities=21%  Similarity=0.311  Sum_probs=109.7

Q ss_pred             hhhhccccCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhhhhchHHHHHHHHHhcCCCchh
Q 025975          109 VALFPTLLLPSSP-SMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAAILRAAGEGNWFHQ  186 (245)
Q Consensus       109 ~~~~p~~~lP~~~-l~~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~-v~~~l~~~~~~~~l~~~~~~~~w~~g  186 (245)
                      ......+.+|+.. +.+.+|++||.+.|.++...+++.|+++||++++.++|+ +.++...+.+.-+.+-..+++   +-
T Consensus       104 y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~~~~~~~---~~  180 (275)
T KOG3140|consen  104 YVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQDVELNRN---SL  180 (275)
T ss_pred             HHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhccc---ch
Confidence            3355556799654 788999999999999999999999999999999999998 788777653333333333333   24


Q ss_pred             HHHhHHhhcccc-chhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhhhhhh
Q 025975          187 FRTVALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPI  242 (245)
Q Consensus       187 ~~~v~l~Rl~P~-P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~l~~l  242 (245)
                      +..+++.|++|+ |+++.|+++++.++++..|++++++|.+|..++++-.|+.++++
T Consensus       181 ~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l  237 (275)
T KOG3140|consen  181 LNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASL  237 (275)
T ss_pred             hhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhh
Confidence            788999999995 99999999999999999999999999999999999999988765

>COG1238 Predicted membrane protein [Function unknown]

Probab=99.37  E-value=1.9e-11  Score=101.71  Aligned_cols=140  Identities=14%  Similarity=0.177  Sum_probs=107.5

Q ss_pred             ccchhHHHHHHHHHHhhhhccccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhh-hchH
Q 025975           94 TTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMT-FGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQG-WLE-KYPK  170 (245)
Q Consensus        94 ~~~~~pv~~ill~~~~~~~p~~~lP~~~l~~~aG~l-FG~~~G~l~~~~g~~lGa~l~f~igR~~g~~v~~-~l~-~~~~  170 (245)
                      +....+.+|+..+++..++|   +|++++....-.. ..++.-.+++++|+++|++++|++||+.++.+.+ +.. ++++
T Consensus        15 ~~~a~~~Lf~vaF~eat~lP---~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~~~   91 (161)
T COG1238          15 QAYAYAGLFIVAFLEATLLP---VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSEEA   91 (161)
T ss_pred             HHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchHHH
Confidence            33445567777787766666   6888754332222 6788889999999999999999999999987444 332 2333


Q ss_pred             HHHHHH-HHhcCCCchhHHHhHHhhccccchhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhhhhh
Q 025975          171 KAAILR-AAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLP  241 (245)
Q Consensus       171 ~~~l~~-~~~~~~w~~g~~~v~l~Rl~P~P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~l~~  241 (245)
                      .++..+ ..++    +|.+.+++.-+.|+| ++++.+||..++++++|+...++|....-++.+++......
T Consensus        92 ~~~~~~~~~~r----yg~~~ll~s~lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~~  158 (161)
T COG1238          92 LEKLQEKWYRR----YGVWTLLLSWLPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGGE  158 (161)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHhccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            444443 3333    589999999999999 99999999999999999999999999999998888766543

>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins

Probab=95.57  E-value=0.26  Score=39.15  Aligned_cols=95  Identities=16%  Similarity=0.116  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHhhhh-chHHHHHHHHHhcCCCchhHHHhHHhhccccc---h
Q 025975          131 GYGFGFLLIMSAVAVGISLPYFIGSHFLHRI------QGWLEK-YPKKAAILRAAGEGNWFHQFRTVALIRISPFP---Y  200 (245)
Q Consensus       131 G~~~G~l~~~~g~~lGa~l~f~igR~~g~~v------~~~l~~-~~~~~~l~~~~~~~~w~~g~~~v~l~Rl~P~P---~  200 (245)
                      +++..++++.+|+++...+.++.-++.-+..      ++..++ .++.++-.+..+|    +|+..+++.=.+|+|   -
T Consensus        15 ~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~k----yg~~GL~lFVaIPlP~TG~   90 (121)
T PF06695_consen   15 PPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEK----YGFWGLALFVAIPLPGTGA   90 (121)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHhCCCCcchH
Confidence            4678888999999888777766665544321      222211 1112222333443    577888877788887   5


Q ss_pred             hhHHHhHhhcCCCchhHHHHHHHhHHHHH
Q 025975          201 IIYNYCAVATHVKYGPYFLGSLVGMVPEI  229 (245)
Q Consensus       201 ~~vny~aG~t~v~~~~F~~~s~iG~lP~~  229 (245)
                      +.-+.+|-+.+|+.++=+.+..+|.+-..
T Consensus        91 wtgal~a~llg~~~~~~~~ai~~Gv~ia~  119 (121)
T PF06695_consen   91 WTGALIASLLGMDKKKAFLAIFLGVLIAG  119 (121)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            66788899999999999999999977554

>PRK01844 hypothetical protein; Provisional

Probab=91.20  E-value=0.59  Score=33.81  Aligned_cols=29  Identities=24%  Similarity=0.556  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025975          132 YGFGFLLIMSAVAVGISLPYFIGSHFLHR  160 (245)
Q Consensus       132 ~~~G~l~~~~g~~lGa~l~f~igR~~g~~  160 (245)
                      .|..+++.+++..+|.+++|+++|+..++
T Consensus         3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k   31 (72)
T PRK01844          3 IWLGILVGVVALVAGVALGFFIARKYMMN   31 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566778889999999999999986543

>PRK00523 hypothetical protein; Provisional

Probab=88.25  E-value=1.4  Score=31.93  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025975          134 FGFLLIMSAVAVGISLPYFIGSHFLHR  160 (245)
Q Consensus       134 ~G~l~~~~g~~lGa~l~f~igR~~g~~  160 (245)
                      ..+++.+++..+|.+.+|+++|+..++
T Consensus         6 l~I~l~i~~li~G~~~Gffiark~~~k   32 (72)
T PRK00523          6 LALGLGIPLLIVGGIIGYFVSKKMFKK   32 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778899999999999987553

>TIGR02359 thiW thiW protein

Probab=83.60  E-value=21  Score=29.76  Aligned_cols=32  Identities=13%  Similarity=0.087  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025975          119 SSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP  150 (245)
Q Consensus       119 ~~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l~  150 (245)
                      +...++++|++||||+|.+...+++.++..+.
T Consensus        34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~   65 (160)
T TIGR02359        34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG   65 (160)
T ss_pred             hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence            56778999999999999999888888877654

Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.

>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.25  E-value=3.3  Score=29.82  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025975          133 GFGFLLIMSAVAVGISLPYFIGSHFLH  159 (245)
Q Consensus       133 ~~G~l~~~~g~~lGa~l~f~igR~~g~  159 (245)
                      |.+.++..++..+|...+|+++|+.-+
T Consensus         4 ~lail~ivl~ll~G~~~G~fiark~~~   30 (71)
T COG3763           4 WLAILLIVLALLAGLIGGFFIARKQMK   30 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556677777777888888999997654

>PRK09609 hypothetical protein; Provisional

Probab=80.33  E-value=18  Score=33.33  Aligned_cols=7  Identities=14%  Similarity=0.316  Sum_probs=2.7

Q ss_pred             HHHHHhH
Q 025975          219 LGSLVGM  225 (245)
Q Consensus       219 ~~s~iG~  225 (245)
                      ..+..|.
T Consensus       212 ~l~~~G~  218 (312)
T PRK09609        212 ILIISGF  218 (312)
T ss_pred             HHHHHHH
Confidence            3333443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00