Citrus Sinensis ID: 025984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ
Secondary Structure (PSIPRED)
ccccccccccEEEEEcccccHHHHHHHHHHccccccccccccccEEEEEEcccHHHHHHHHcccccccccccccccccccccccEEcccccccccEEEcccccHHHHHHHHHHcccccccEEcccccEEEEEEHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEcccccHHHHHHHHHHccccEEcEEccccEEEEEEEcHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccEEEEEccccccccccccHHcccccEEEccccccccHHHccccccccccHHHccHcccccccHHHHcHHccccEEEEEccccccEEEEcccccHHHHHHHHHHccccccEEEcccccEEEEEEHHHHHHHHHccccccccccHcHHHHHHHccHHHHHHHHHHHHcccHHHHcccccEEEcccccHHHHHHHHHHccccccEEEcccccEEEEEEHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgrtsfalqlpclllsrpgcrvfSVLATSSDRVSALRRSSAvfasgtltansaapssgvytvgdfmttkeelhvvkptttVDEALEILVEKRitgfpvidddwklvglvsdydllaldsisgsgradnsmfpevdsTWKTFNEVQKLLSKtngkmvgdlmtpapvvvRETTNLEDAARLLLETKyrrlpvvdadgklvgiITRGNVVRAALQIKHATEMGAQ
Flexible Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVfasgtltansaapssgvYTVGDFMTTKEElhvvkptttvDEALEILVEKritgfpvidddWKLVGLVSDYDLLALDSisgsgradnSMFPEVDSTWKTFNEVQKLLsktngkmvgdlMTPAPVVVRETTNLEDAARLLletkyrrlpvvdadgklvgiiTRGNVVRAALQIKHATEMGAQ
Low Complexity Region (SEG)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ
Disordered region (IsUnstruct)
**************************TSFALQLPCLLLSRPGCRVFSVLATSSDRVSAL****AVFASGTL********SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG********FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK********
Disordered Region (DISOPRED)
*******HSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTL***SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ**********
Disordered Region (DISEMBL)
MDSIVLPHSISVARLR*********RTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ
Disordered Region (DISPRO)
*DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS*******R*S***ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
O23193	236	CBS domain-containing pro	yes	no	0.836	0.868	0.760	7e-84
Q9C5D0	238	CBS domain-containing pro	no	no	0.742	0.764	0.704	7e-74
Q58821	168	Uncharacterized protein M	yes	no	0.6	0.875	0.276	4e-11
O58045	486	Inosine-5'-monophosphate	yes	no	0.420	0.211	0.304	2e-09
Q9UY49	485	Inosine-5'-monophosphate	yes	no	0.420	0.212	0.289	3e-09
P42851	485	Inosine-5'-monophosphate	yes	no	0.420	0.212	0.282	5e-09
O67820	490	Inosine-5'-monophosphate	yes	no	0.428	0.214	0.305	8e-09
P65167	529	Inosine-5'-monophosphate	yes	no	0.412	0.190	0.298	5e-07
P65168	529	Inosine-5'-monophosphate	yes	no	0.412	0.190	0.298	5e-07
P32987	164	Uncharacterized 17.7 kDa	N/A	no	0.518	0.774	0.270	6e-07

>sp|O23193|CBSX1_ARATH CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2

 Score =  310 bits (793), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 159/209 (76%), Positives = 175/209 (83%), Gaps = 4/209 (1%)

Query: 37  LLSRPGCRVFSVLATSSDRVSALRRSSAVFASG-TLTANSAAPSSGVYTVGDFMTTKEEL 95
            LS   C  F+    S    S  R  SA  A+G TL  NS++P SGVYTVG+FMT KE+L
Sbjct: 31  FLSVQPCHKFTF---SRSFPSKSRIPSASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDL 87

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
           HVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLALDSISGSGR +NSMFP
Sbjct: 88  HVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFP 147

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
           EVDSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E TNLEDAA++LLETKYRRLPVVD
Sbjct: 148 EVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD 207

Query: 216 ADGKLVGIITRGNVVRAALQIKHATEMGA 244
           +DGKLVGIITRGNVVRAALQIK + +  A
Sbjct: 208 SDGKLVGIITRGNVVRAALQIKRSGDRNA 236

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5D0|CBSX2_ARATH CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1

 Score =  276 bits (707), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 136/193 (70%), Positives = 163/193 (84%), Gaps = 11/193 (5%)

Query: 60  RRSSAVFASGTLTANSAAPSS-----------GVYTVGDFMTTKEELHVVKPTTTVDEAL 108
           RRSS    S T++A  AAP+S           G YTVGDFMT ++ LHVVKP+T+VD+AL
Sbjct: 43  RRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDAL 102

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 168
           E+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDSTWKTFNE+Q
Sbjct: 103 ELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQ 162

Query: 169 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGN 228
           KL+SKT GK+VGDLMTP+P+VVR++TNLEDAARLLLETK+RRLPVVDADGKL+GI+TRGN
Sbjct: 163 KLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGN 222

Query: 229 VVRAALQIKHATE 241
           VVRAALQIK  TE
Sbjct: 223 VVRAALQIKRETE 235

Arabidopsis thaliana (taxid: 3702)

>sp|Q58821|Y1426_METJA Uncharacterized protein MJ1426 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1426 PE=4 SV=1

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 87/159 (54%), Gaps = 12/159 (7%)

Query: 86  GDFMTTKEELH---VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           G+ M  K+ +    VV     + + + +  + +I+G PV++ D KLVG++S+ D++   +
Sbjct: 12  GEIMLIKDIMKKPIVVYEDNDLIDVIRLFRKNKISGAPVLNKDGKLVGIISESDIVK--T 69

Query: 143 ISGSGRADNSMFPE----VDSTWKTFNEVQKLLSKTNGKM---VGDLMTPAPVVVRETTN 195
           I       N + P     ++   KT  ++++ +      +   V D+MT   +V +    
Sbjct: 70  IVTHNEDLNLILPSPLDLIELPLKTALKIEEFMEDLKNALKTKVRDVMTRKVIVAKPDMT 129

Query: 196 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
           + DAA+L+++   +RLPVVD +G L+GI+TRG+++ A +
Sbjct: 130 INDAAKLMVKNNIKRLPVVDDEGNLIGIVTRGDLIEALI 168

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O58045|IMDH_PYRHO Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=guaB PE=1 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 35/138 (25%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           E++  + P  TVD AL ++ +  I G PV++D+ K+VG+++  D+ A +           
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDIAARE----------- 148

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                  GK+V +LMT   + V E+  +E+A ++++E +  RLP
Sbjct: 149 -----------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLP 185

Query: 213 VVDADGKLVGIITRGNVV 230
           VVD  GKLVG+IT  ++V
Sbjct: 186 VVDERGKLVGLITMSDLV 203

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q9UY49|IMDH_PYRAB Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=guaB PE=3 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 35/138 (25%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           E++  + P  TVD AL ++ +  I G PV++++ K+VG++S  D+ A +           
Sbjct: 101 EDVITISPEETVDFALFLMEKHDIDGLPVVENE-KVVGIISKKDIAARE----------- 148

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                  GK+V +LMT   + V E   +E+A ++++E +  RLP
Sbjct: 149 -----------------------GKLVKELMTKDVITVPENIEVEEALKIMIENRIDRLP 185

Query: 213 VVDADGKLVGIITRGNVV 230
           VVD +G+L+G+IT  ++V
Sbjct: 186 VVDKEGRLIGLITMSDLV 203

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P42851|IMDH_PYRFU Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=guaB PE=3 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 35/138 (25%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           E++  + P  T+D AL ++ +  I G PV+++D ++VG+++  D+ A +           
Sbjct: 101 EDVITIAPDETIDYALFLMEKHGIDGLPVVEED-RVVGIITKKDIAARE----------- 148

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                  G+ V +LMT   + V E+ ++E+A ++++E +  RLP
Sbjct: 149 -----------------------GRTVKELMTREVITVPESVDVEEALKIMMENRIDRLP 185

Query: 213 VVDADGKLVGIITRGNVV 230
           VV+ DGKLVG+IT  ++V
Sbjct: 186 VVNEDGKLVGLITMSDLV 203

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|O67820|IMDH_AQUAE Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=guaB PE=3 SV=1

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 29/134 (21%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           VKP T V EAL+I+ + +I+G PV+D++ KL+G++++ DL  +              PE 
Sbjct: 103 VKPDTRVKEALDIMAKYKISGVPVVDEERKLIGILTNRDLRFIK-------------PED 149

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
            S       V + ++K N       +  AP    E   L++A  +  + K  +LP+VD +
Sbjct: 150 YS-----KPVSEFMTKEN-------LITAP----EGITLDEAEEIFRKYKIEKLPIVDKE 193

Query: 218 GKLVGIITRGNVVR 231
           GK+ G+IT  ++V+
Sbjct: 194 GKIKGLITIKDIVK 207

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P65167|IMDH_MYCTU Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium tuberculosis GN=guaB PE=1 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 33/134 (24%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158
           +P  T+ +   +    RI+G PV+DDD  LVG++++ D                M  EVD
Sbjct: 137 RPDNTLAQVDALCARFRISGLPVVDDDGALVGIITNRD----------------MRFEVD 180

Query: 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDAARLLLETKYRRLPVVDAD 217
            +                K V ++MT AP++  +E  +   A  LL   K  +LPVVD  
Sbjct: 181 QS----------------KQVAEVMTKAPLITAQEGVSASAALGLLRRNKIEKLPVVDGR 224

Query: 218 GKLVGIITRGNVVR 231
           G+L G+IT  + V+
Sbjct: 225 GRLTGLITVKDFVK 238

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P65168|IMDH_MYCBO Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=guaB PE=3 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 33/134 (24%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158
           +P  T+ +   +    RI+G PV+DDD  LVG++++ D                M  EVD
Sbjct: 137 RPDNTLAQVDALCARFRISGLPVVDDDGALVGIITNRD----------------MRFEVD 180

Query: 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDAARLLLETKYRRLPVVDAD 217
            +                K V ++MT AP++  +E  +   A  LL   K  +LPVVD  
Sbjct: 181 QS----------------KQVAEVMTKAPLITAQEGVSASAALGLLRRNKIEKLPVVDGR 224

Query: 218 GKLVGIITRGNVVR 231
           G+L G+IT  + V+
Sbjct: 225 GRLTGLITVKDFVK 238

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Mycobacterium bovis (taxid: 1765)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 32/159 (20%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V    TTK  ++VVKP  T+ EA + + E  +    VID   ++VG++++ D++     +
Sbjct: 5   VSQIATTK--VYVVKPNVTIAEAAKEMKEHNLGSLVVIDSQNRVVGIITERDIVK----A 58

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
            S R       ++DS  + +                  MT     V E T + DA  ++L
Sbjct: 59  ASNR-------DIDSPVEKY------------------MTKDVKGVTEDTEVTDALDIML 93

Query: 205 ETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMG 243
              +R LP++ ++GKL GI++  ++ RA L + H  + G
Sbjct: 94  NNGFRHLPIIKSNGKLYGIVSIRDLARALLDV-HTMQFG 131

Acidianus ambivalens (taxid: 2283)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
225438783	246	PREDICTED: CBS domain-containing protein	0.983	0.979	0.741	5e-95
317106695	236	JHL03K20.5 [Jatropha curcas]	0.938	0.974	0.762	4e-93
255587643	239	conserved hypothetical protein [Ricinus	0.848	0.870	0.808	2e-88
147802944	288	hypothetical protein VITISV_021555 [Viti	0.983	0.836	0.632	2e-88
224081731	208	predicted protein [Populus trichocarpa]	0.836	0.985	0.776	1e-86
449443418	235	PREDICTED: CBS domain-containing protein	0.893	0.931	0.704	9e-85
449525190	235	PREDICTED: CBS domain-containing protein	0.893	0.931	0.704	1e-84
15234564	236	cystathionine beta-synthase domain-conta	0.836	0.868	0.760	4e-82
297802232	236	hypothetical protein ARALYDRAFT_490898 [	0.746	0.775	0.814	2e-81
356541776	228	PREDICTED: CBS domain-containing protein	0.714	0.767	0.828	1e-80

>gi|225438783|ref|XP_002283079.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Vitis vinifera]

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 181/244 (74%), Positives = 204/244 (83%), Gaps = 3/244 (1%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+LP +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILLPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            +RRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GIRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGK 177
           GFPVIDDDWKLVGLVSDYDLLALDSISG G  D  MFPEVDSTWKTFNE+QKLLSKTNGK
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISGGGLTDTIMFPEVDSTWKTFNELQKLLSKTNGK 180

Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237
           +VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK
Sbjct: 181 VVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIK 240

Query: 238 HATE 241
            A E
Sbjct: 241 RAVE 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106695|dbj|BAJ53196.1| JHL03K20.5 [Jatropha curcas]

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 186/244 (76%), Positives = 201/244 (82%), Gaps = 14/244 (5%)

Query: 1   MDSIV---LPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVS 57
           MDSI+   L H + + RLRA     TS   SFA QLPCLL SRPG R+  + A     +S
Sbjct: 1   MDSILHQELLH-LPITRLRATA---TSPIVSFAQQLPCLLSSRPGRRLLPLSA-----IS 51

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
             RRSSA+ ASG   A+S  P SGVYTVGDFMT KE+L VVKPTTTVDEAL+ LVE RIT
Sbjct: 52  HPRRSSAIAASGAFVASS--PKSGVYTVGDFMTRKEDLQVVKPTTTVDEALQTLVEHRIT 109

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGK 177
           GFPVIDDDWKLVGLVSDYDLLALDSISG GR DNSMFPEVDSTWKTFNEVQKLLSKTNGK
Sbjct: 110 GFPVIDDDWKLVGLVSDYDLLALDSISGGGRTDNSMFPEVDSTWKTFNEVQKLLSKTNGK 169

Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237
           +VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD++GKLVGIITRGNVVRAAL+IK
Sbjct: 170 LVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDSEGKLVGIITRGNVVRAALEIK 229

Query: 238 HATE 241
            + E
Sbjct: 230 RSIE 233

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587643|ref|XP_002534340.1| conserved hypothetical protein [Ricinus communis] gi|223525462|gb|EEF28042.1| conserved hypothetical protein [Ricinus communis]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 173/214 (80%), Positives = 182/214 (85%), Gaps = 6/214 (2%)

Query: 28  SFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD 87
           SFA QLPCLL S    R    L+     +S  RRSS + A+GTL ANS  P SGVYTVGD
Sbjct: 29  SFAHQLPCLLSSATVSRRLFHLSV----ISWPRRSSTISATGTLMANS--PKSGVYTVGD 82

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG 147
           FMT KE+L VVKPTTTVDEAL+ LVE RITGFPVIDDDWKLVGLVSDYDLLALDSISG G
Sbjct: 83  FMTRKEDLCVVKPTTTVDEALQTLVEHRITGFPVIDDDWKLVGLVSDYDLLALDSISGGG 142

Query: 148 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK 207
           R DNSMFPEVDSTWKTFNEVQKLLSKTNGK+VGDLMTPAPVVVRETTNLEDAARLLLETK
Sbjct: 143 RTDNSMFPEVDSTWKTFNEVQKLLSKTNGKLVGDLMTPAPVVVRETTNLEDAARLLLETK 202

Query: 208 YRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 241
           YRRLPVVDA+GKLVGIITRGNVVRAAL+IK   E
Sbjct: 203 YRRLPVVDAEGKLVGIITRGNVVRAALEIKRDME 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802944|emb|CAN64036.1| hypothetical protein VITISV_021555 [Vitis vinifera]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 181/286 (63%), Positives = 203/286 (70%), Gaps = 45/286 (15%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+ P +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILPPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            LRRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GLRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSIS--------------------------------- 144
           GFPVIDDDWKLVGLVSDYDLLALDSIS                                 
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISELPQLKHVPEDISGKSLVLHGSLERQMKSLFLT 180

Query: 145 ---------GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTN 195
                    G G  D  MFPEVDSTWKTFNE+QKLLSKTNGK+VGDLMTPAPVVVRETTN
Sbjct: 181 AVDVLIFGSGGGLTDTIMFPEVDSTWKTFNELQKLLSKTNGKVVGDLMTPAPVVVRETTN 240

Query: 196 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 241
           LEDAARLLLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK A E
Sbjct: 241 LEDAARLLLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRAVE 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081731|ref|XP_002306482.1| predicted protein [Populus trichocarpa] gi|222855931|gb|EEE93478.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 167/215 (77%), Positives = 183/215 (85%), Gaps = 10/215 (4%)

Query: 33  LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFA---SGTLTANSAAPSSGVYTVGDFM 89
           +PCLL S PG ++ S+ +     +S  RRS ++ A   SGTL ANS  P SGVYTVGDFM
Sbjct: 1   MPCLLFSTPGRKLVSLSS-----ISWPRRSPSLIAAASSGTLMANS--PKSGVYTVGDFM 53

Query: 90  TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA 149
           T KE+LHVVKPTTTV+EALE LVE+RITGFPVIDDDWKLVGLVSDYDLLALDSISG GR 
Sbjct: 54  TRKEDLHVVKPTTTVNEALETLVERRITGFPVIDDDWKLVGLVSDYDLLALDSISGGGRT 113

Query: 150 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR 209
           + +MFPEVDSTWKTFNEVQ LL+KTNGK+VGDLMTPAPVVVRETTNLED+ RLLLETKYR
Sbjct: 114 ETNMFPEVDSTWKTFNEVQMLLNKTNGKVVGDLMTPAPVVVRETTNLEDSVRLLLETKYR 173

Query: 210 RLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 244
           RLPVVDADGKLVGIITRGNVVRAAL IKHA E  A
Sbjct: 174 RLPVVDADGKLVGIITRGNVVRAALHIKHAMERKA 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443418|ref|XP_004139474.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  318 bits (816), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 167/237 (70%), Positives = 188/237 (79%), Gaps = 18/237 (7%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD
Sbjct: 56  IAASGTLMANSVPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDD 115

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT 184
           +WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WKTFNEVQ+LLSKTNGK+VGDLMT
Sbjct: 116 NWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQRLLSKTNGKVVGDLMT 175

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 241
            AP+VVRE T+LED ARLLL+TKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA E
Sbjct: 176 TAPLVVREITDLEDVARLLLQTKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAEE 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525190|ref|XP_004169601.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/237 (70%), Positives = 188/237 (79%), Gaps = 18/237 (7%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD
Sbjct: 56  IAASGTLMANSLPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDD 115

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT 184
           +WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WKTFNEVQ+LLSKTNGK+VGDLMT
Sbjct: 116 NWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQRLLSKTNGKVVGDLMT 175

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 241
            AP+VVRE T+LED ARLLL+TKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA E
Sbjct: 176 TAPLVVREITDLEDVARLLLQTKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAEE 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234564|ref|NP_195409.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana] gi|75219197|sp|O23193.2|CBSX1_ARATH RecName: Full=CBS domain-containing protein CBSX1, chloroplastic; AltName: Full=CBS domain-containing protein 2; Short=AtCDCP2; AltName: Full=Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2; Short=AtLEJ2; Flags: Precursor gi|4006881|emb|CAB16799.1| putative protein [Arabidopsis thaliana] gi|7270640|emb|CAB80357.1| putative protein [Arabidopsis thaliana] gi|21537376|gb|AAM61717.1| unknown [Arabidopsis thaliana] gi|28392900|gb|AAO41886.1| unknown protein [Arabidopsis thaliana] gi|28827758|gb|AAO50723.1| unknown protein [Arabidopsis thaliana] gi|332661316|gb|AEE86716.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana]

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 159/209 (76%), Positives = 175/209 (83%), Gaps = 4/209 (1%)

Query: 37  LLSRPGCRVFSVLATSSDRVSALRRSSAVFASG-TLTANSAAPSSGVYTVGDFMTTKEEL 95
            LS   C  F+    S    S  R  SA  A+G TL  NS++P SGVYTVG+FMT KE+L
Sbjct: 31  FLSVQPCHKFTF---SRSFPSKSRIPSASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDL 87

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
           HVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLALDSISGSGR +NSMFP
Sbjct: 88  HVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFP 147

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
           EVDSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E TNLEDAA++LLETKYRRLPVVD
Sbjct: 148 EVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD 207

Query: 216 ADGKLVGIITRGNVVRAALQIKHATEMGA 244
           +DGKLVGIITRGNVVRAALQIK + +  A
Sbjct: 208 SDGKLVGIITRGNVVRAALQIKRSGDRNA 236

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802232|ref|XP_002869000.1| hypothetical protein ARALYDRAFT_490898 [Arabidopsis lyrata subsp. lyrata] gi|297314836|gb|EFH45259.1| hypothetical protein ARALYDRAFT_490898 [Arabidopsis lyrata subsp. lyrata]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/183 (81%), Positives = 166/183 (90%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
           S++  A  TL  NS++P SGVYTVG+FMT K++LHVVKPTTTVDEALE+LVE RITGFPV
Sbjct: 54  SASSAAGSTLMKNSSSPRSGVYTVGEFMTKKDDLHVVKPTTTVDEALELLVENRITGFPV 113

Query: 122 IDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGD 181
           ID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGD
Sbjct: 114 IDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGD 173

Query: 182 LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 241
           LMTPAP+VV E TNLEDAA++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK + +
Sbjct: 174 LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGD 233

Query: 242 MGA 244
             A
Sbjct: 234 RNA 236

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541776|ref|XP_003539349.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Glycine max] gi|255632210|gb|ACU16463.1| unknown [Glycine max]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 145/175 (82%), Positives = 162/175 (92%)

Query: 67  ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           A+ TLTAN  +P SG+YTVGDFMT KE+LHVVKPTT+VDEALEILVE RITGFPVIDD+W
Sbjct: 51  AANTLTANDVSPRSGLYTVGDFMTKKEDLHVVKPTTSVDEALEILVENRITGFPVIDDNW 110

Query: 127 KLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA 186
           KLVG+VSDYDLLALDSISG G  DN+MFPEVDSTWKTFNEVQKLLSKTNGK++G+LMT A
Sbjct: 111 KLVGVVSDYDLLALDSISGHGLKDNNMFPEVDSTWKTFNEVQKLLSKTNGKLIGELMTTA 170

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 241
           P+VVRETTNLEDAARLLLETK+RRLPVVDA+G+LVGIITRGNVVRAAL +K A +
Sbjct: 171 PMVVRETTNLEDAARLLLETKFRRLPVVDAEGRLVGIITRGNVVRAALHMKQANQ 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2114970	236	LEJ2 "AT4G36910" [Arabidopsis	0.963	1.0	0.684	2.3e-78
TAIR|locus:2124276	238	LEJ1 "AT4G34120" [Arabidopsis	0.8	0.823	0.678	1.9e-67
UNIPROTKB|Q74BN1	144	GSU2010 "CBS domain pair-conta	0.285	0.486	0.402	4.4e-12
TIGR_CMR|GSU_2010	144	GSU_2010 "CBS domain protein"	0.285	0.486	0.402	4.4e-12
UNIPROTKB|Q3AFN9	210	acuB "Acetoin utilization prot	0.204	0.238	0.547	5.5e-11
TIGR_CMR|CHY_0173	210	CHY_0173 "acetoin utilization	0.204	0.238	0.547	5.5e-11
UNIPROTKB|Q74C73	149	GSU1801 "CBS domain pair-conta	0.571	0.939	0.324	1.5e-10
TIGR_CMR|GSU_1801	149	GSU_1801 "CBS domain protein"	0.571	0.939	0.324	1.5e-10
DICTYBASE|DDB_G0289609	145	DDB_G0289609 "CBS (cystathioni	0.351	0.593	0.264	1.4e-09
UNIPROTKB|Q3AFS5	271	CHY_0137 "CBS/GGDEF domain pro	0.253	0.228	0.435	4.8e-09

TAIR|locus:2114970 LEJ2 "AT4G36910" [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 167/244 (68%), Positives = 191/244 (78%)

Query:     1 MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALR 60
             MD+++    +S   LRA     +S  +S  L LP  L  +P C  F+   +   +     
Sbjct:     1 MDAVLYSVPLSFTPLRA-----SSSPSSPYLLLPRFLSVQP-CHKFTFSRSFPSKSRIPS 54

Query:    61 RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
              SSA  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFP
Sbjct:    55 ASSA--AGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFP 112

Query:   121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVG 180
             VID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VG
Sbjct:   113 VIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVG 172

Query:   181 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 240
             DLMTPAP+VV E TNLEDAA++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK + 
Sbjct:   173 DLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSG 232

Query:   241 EMGA 244
             +  A
Sbjct:   233 DRNA 236

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

TAIR|locus:2124276 LEJ1 "AT4G34120" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 137/202 (67%), Positives = 171/202 (84%)

Query:    46 FSVLATSSDRVSALRRSS----AVFAS-GTLTANSAAPS-SGVYTVGDFMTTKEELHVVK 99
             FS+L  S+ R S+    S    A FA+  ++  N++ P+ +G YTVGDFMT ++ LHVVK
Sbjct:    34 FSLLPLSNRRRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVK 93

Query:   100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159
             P+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDS
Sbjct:    94 PSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS 153

Query:   160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGK 219
             TWKTFNE+QKL+SKT GK+VGDLMTP+P+VVR++TNLEDAARLLLETK+RRLPVVDADGK
Sbjct:   154 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGK 213

Query:   220 LVGIITRGNVVRAALQIKHATE 241
             L+GI+TRGNVVRAALQIK  TE
Sbjct:   214 LIGILTRGNVVRAALQIKRETE 235

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q74BN1 GSU2010 "CBS domain pair-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 116 (45.9 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:   160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGK 219
             TW    EV  +LSKT+   V + M P P  V+  T+L +AA+LL + K   + VVD + +
Sbjct:    66 TW----EVHYILSKTS---VTEAMNPKPYKVKPDTDLTEAAQLLHDRKLNGVLVVDDNDR 118

Query:   220 LVGIITRGNVVRAALQI 236
             LVGI+T  N + A ++I
Sbjct:   119 LVGILTVTNALEALIEI 135

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2010 GSU_2010 "CBS domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 116 (45.9 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:   160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGK 219
             TW    EV  +LSKT+   V + M P P  V+  T+L +AA+LL + K   + VVD + +
Sbjct:    66 TW----EVHYILSKTS---VTEAMNPKPYKVKPDTDLTEAAQLLHDRKLNGVLVVDDNDR 118

Query:   220 LVGIITRGNVVRAALQI 236
             LVGI+T  N + A ++I
Sbjct:   119 LVGILTVTNALEALIEI 135

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AFN9 acuB "Acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CHY_0173 CHY_0173 "acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

UNIPROTKB|Q74C73 GSU1801 "CBS domain pair-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 149 (57.5 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 49/151 (32%), Positives = 75/151 (49%)

Query:    84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
             TV D MTT   +   +  TT+ E  E+  + RI   PV+D+   L G+V++ DL+  D  
Sbjct:     3 TVRDIMTTN--VVTARRETTIRELAELFSKYRIGSIPVVDEAGNLAGIVTESDLIEQDK- 59

Query:   144 SGSGRADNSMFPEV---DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAA 200
             S       S+F  V   +S  K   E+QK+     G+  GD+ T     V   T +   A
Sbjct:    60 SLHIPTVISLFDWVIYLESAKKFEREIQKV----TGQTAGDIYTTEVESVTPETPVSTVA 115

Query:   201 RLLLETKYRRLPVVDADGKLVGIITRGNVVR 231
              ++   K   LPVV+   KLVGI++R +++R
Sbjct:   116 DIMANKKLHTLPVVEGK-KLVGIVSRIDLIR 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1801 GSU_1801 "CBS domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 149 (57.5 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 49/151 (32%), Positives = 75/151 (49%)

Query:    84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
             TV D MTT   +   +  TT+ E  E+  + RI   PV+D+   L G+V++ DL+  D  
Sbjct:     3 TVRDIMTTN--VVTARRETTIRELAELFSKYRIGSIPVVDEAGNLAGIVTESDLIEQDK- 59

Query:   144 SGSGRADNSMFPEV---DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAA 200
             S       S+F  V   +S  K   E+QK+     G+  GD+ T     V   T +   A
Sbjct:    60 SLHIPTVISLFDWVIYLESAKKFEREIQKV----TGQTAGDIYTTEVESVTPETPVSTVA 115

Query:   201 RLLLETKYRRLPVVDADGKLVGIITRGNVVR 231
              ++   K   LPVV+   KLVGI++R +++R
Sbjct:   116 DIMANKKLHTLPVVEGK-KLVGIVSRIDLIR 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0289609 DDB_G0289609 "CBS (cystathionine-beta-synthase) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 97 (39.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 23/87 (26%), Positives = 45/87 (51%)

Query:   150 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR 209
             D  +    DS +   N   +L  K     V  +M   PV + + + + +AA+L+  T   
Sbjct:    52 DRDLRLATDSPFLPENNEDRL-EKLRLHKVSSIMKQNPVTIEDFSPVVEAAKLMRVTNVG 110

Query:   210 RLPVVDADGKLVGIITRGNVVRAALQI 236
              LPV+D  G+L+G++TR +++   +++
Sbjct:   111 GLPVLDKKGRLIGMVTRSDLLDLLIKV 137

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q3AFS5 CHY_0137 "CBS/GGDEF domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 118 (46.6 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
 Identities = 27/62 (43%), Positives = 35/62 (56%)

Query:   170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 229
             L+     ++V D MT  PVV+ E   L DA + +LE    RLPV+D  G L GIITR  +
Sbjct:    54 LIFYPENRLVIDAMTEEPVVIEEKAYLFDAYQKMLENNIERLPVIDESGALTGIITRKVI 113

Query:   230 VR 231
              R
Sbjct:   114 ER 115

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23193	CBSX1_ARATH	No assigned EC number	0.7607	0.8367	0.8686	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	4e-27
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	8e-27
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	2e-26
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	3e-24
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	6e-23
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	1e-22
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	3e-21
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	6e-21
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	6e-21
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-19
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	5e-19
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	7e-19
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	9e-19
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-18
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	4e-18
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-17
pfam00571	57	pfam00571, CBS, CBS domain	2e-16
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	3e-16
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	4e-16
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	4e-16
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	8e-16
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	3e-15
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	4e-15
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	5e-15
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	7e-15
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	4e-14
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	5e-14
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	1e-13
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	2e-13
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	3e-13
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	3e-13
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	4e-13
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	1e-12
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	1e-12
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	1e-12
pfam00571	57	pfam00571, CBS, CBS domain	2e-12
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	2e-12
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	3e-12
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	5e-12
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	6e-12
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	4e-11
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	5e-11
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	7e-11
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	2e-10
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	2e-10
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	2e-10
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	3e-10
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	4e-10
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	6e-10
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	7e-10
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	2e-09
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	2e-09
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	3e-09
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	3e-09
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	3e-09
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	5e-09
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	6e-09
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	1e-08
cd04598	119	cd04598, CBS_pair_GGDEF_assoc, This cd contains tw	1e-08
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	2e-08
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	2e-08
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	2e-08
cd04639	111	cd04639, CBS_pair_26, The CBS domain, named after	2e-08
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	2e-08
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	3e-08
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	3e-08
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	4e-08
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	4e-08
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	4e-08
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	5e-08
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	5e-08
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	9e-08
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-07
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	1e-07
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	1e-07
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	2e-07
cd04594	104	cd04594, CBS_pair_EriC_assoc_archaea, This cd cont	2e-07
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	3e-07
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	3e-07
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	4e-07
TIGR01303	475	TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family	4e-07
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	6e-07
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	7e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	1e-06
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	1e-06
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	1e-06
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	1e-06
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	2e-06
cd04582	106	cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contain	2e-06
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	2e-06
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	3e-06
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	3e-06
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	3e-06
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	4e-06
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	5e-06
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	5e-06
cd04597	113	cd04597, CBS_pair_DRTGG_assoc2, This cd contains t	6e-06
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	7e-06
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	7e-06
cd04608	124	cd04608, CBS_pair_PALP_assoc, This cd contains two	8e-06
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	9e-06
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	9e-06
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	9e-06
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	9e-06
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-05
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	2e-05
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	2e-05
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	3e-05
cd04591	105	cd04591, CBS_pair_EriC_assoc_euk_bac, This cd cont	3e-05
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	4e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	6e-05
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	6e-05
PRK01862	574	PRK01862, PRK01862, putative voltage-gated ClC-typ	8e-05
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	9e-05
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	9e-05
cd04614	96	cd04614, CBS_pair_1, The CBS domain, named after h	9e-05
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	1e-04
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	1e-04
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	1e-04
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	2e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	2e-04
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	2e-04
cd04639	111	cd04639, CBS_pair_26, The CBS domain, named after	2e-04
cd04608	124	cd04608, CBS_pair_PALP_assoc, This cd contains two	2e-04
cd04614	96	cd04614, CBS_pair_1, The CBS domain, named after h	2e-04
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	3e-04
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	3e-04
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	3e-04
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	3e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	4e-04
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	4e-04
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	4e-04
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	4e-04
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	4e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	5e-04
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	5e-04
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	5e-04
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	6e-04
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	9e-04
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	9e-04
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	0.001
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.001
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	0.001
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	0.001
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	0.001
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	0.001
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	0.001
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	0.001
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	0.003
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	0.003
TIGR00400	449	TIGR00400, mgtE, Mg2+ transporter (mgtE)	0.003

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  101 bits (253), Expect = 4e-27
 Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 10/137 (7%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFP 155
            VK   T+ + +EIL+  +I+G PV+D++ ++VG+VS+ DL  +  I  G G        
Sbjct: 5   TVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDL--IRKIYKGKGLFY-VTLL 61

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
                +   ++++KLL K     V ++MT   + V E T +ED AR++ +   +RLPVVD
Sbjct: 62  YSV-IFLDESKIKKLLGKK----VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD 116

Query: 216 ADGKLVGIITRGNVVRA 232
            DGKLVGII+RG+++R+
Sbjct: 117 -DGKLVGIISRGDIIRS 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 99.4 bits (248), Expect = 8e-27
 Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 27/140 (19%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
            ++  V P  TV EAL +++E  I+G PV+DDD +LVG+V++ DLL   +  G       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG------- 53

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                     VGD+MT   V V   T+LE+AA L+LE   RRLP
Sbjct: 54  --------------------LDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLP 93

Query: 213 VVDADGKLVGIITRGNVVRA 232
           VVD +G+LVGI+TR +++RA
Sbjct: 94  VVDDEGRLVGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 99.6 bits (249), Expect = 2e-26
 Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 6/136 (4%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V P T+V EA  ++++  I+G PV+DDD +LVG+VS+ DLL    + G+ R        
Sbjct: 6   TVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAEL-GTERRRARWLDL 64

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                    E+     +++G+ V D+MT   V V E T L + A L+ E + +R+PVV  
Sbjct: 65  ----LAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR- 119

Query: 217 DGKLVGIITRGNVVRA 232
            G+LVGI++R +++RA
Sbjct: 120 GGRLVGIVSRADLLRA 135

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 93.0 bits (232), Expect = 3e-24
 Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 26/138 (18%)

Query: 95  LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154
                P  +V EA+E L++ +I+G PV+DD+  LVG +S+ D L    +  S     S  
Sbjct: 3   PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLK--QLLES-----SYH 55

Query: 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 214
            +  +T                  V D+MT   + V    ++ D A+L+L+ K +R PVV
Sbjct: 56  CDGVAT------------------VRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVV 97

Query: 215 DADGKLVGIITRGNVVRA 232
           D DGKLVG I+R +V+RA
Sbjct: 98  D-DGKLVGQISRRDVLRA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 90.5 bits (225), Expect = 6e-23
 Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 11/143 (7%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN----S 152
                 T+ +A  +L E +I+G PV+D   KLVG+VS+ D+L L  +     + N    S
Sbjct: 5   TCNADDTISDAARLLRENKISGAPVLDGG-KLVGIVSESDILKL--LVTHDPSGNLWLPS 61

Query: 153 MFPEVDSTWKTF---NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR 209
               ++   + F    E ++ L+      V D+MT   + +    ++EDAA L++  K +
Sbjct: 62  PLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIK 121

Query: 210 RLPVVDADGKLVGIITRGNVVRA 232
           RLPVV+ DG+LVGI+TRG+++  
Sbjct: 122 RLPVVE-DGRLVGIVTRGDIIEG 143

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 89.2 bits (222), Expect = 1e-22
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 18/139 (12%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
            +  +    ++ +A E++ E RI   PV+++D KLVGL++  DLL         RA  S 
Sbjct: 2   PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL---------RAALSS 52

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
             +           ++ L+K     V ++M    + V   T L +AA +++E K   LPV
Sbjct: 53  LSDNG---------EESLTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPV 103

Query: 214 VDADGKLVGIITRGNVVRA 232
           VD  G LVGIITR + +R 
Sbjct: 104 VDDKGTLVGIITRSDFLRL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           + PTTT+ EALE++ E +I   PV+D++ +LVG+V+D DL           A  S F   
Sbjct: 6   ITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR---------DASPSPFTT- 55

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                       LL K     V ++MT   + V     +E+AA L+ E +   LPVV+ D
Sbjct: 56  -----LSEHELYLLLKMP---VKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D 106

Query: 218 GKLVGIITRGNVVRA 232
           G+LVGIIT  +++R 
Sbjct: 107 GRLVGIITETDLLRT 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 84.1 bits (209), Expect = 6e-21
 Identities = 46/129 (35%), Positives = 63/129 (48%), Gaps = 33/129 (25%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P  TV EALE++ E  I+G PV+DDD KLVG+V++ DL     +              
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETDLDKP----------- 55

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRE-TTNLEDAARLLLETKYRRLPVVDA 216
                                V ++MTP  ++     T+LE+A  LL E K  +LPVVD 
Sbjct: 56  ---------------------VSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD 94

Query: 217 DGKLVGIIT 225
           +GKL G+IT
Sbjct: 95  EGKLKGLIT 103

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 84.6 bits (210), Expect = 6e-21
 Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 18/136 (13%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V P T++ EAL+++ E  I   PV+D   KLVG+V+D DL      S S      ++  
Sbjct: 5   TVTPDTSLMEALKLMKENSIRRLPVVDRG-KLVGIVTDRDLKL---ASPSKATTLDIW-- 58

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                    E+  LLSK     V D+MT  P+ V    ++E+AA L+LE K   LPVVD 
Sbjct: 59  ---------ELYYLLSKIK---VSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD 106

Query: 217 DGKLVGIITRGNVVRA 232
            G+LVGIIT  ++ RA
Sbjct: 107 QGRLVGIITESDLFRA 122

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 29/139 (20%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
           ++  V    TVDE L ++  +R  G+PV+DD  +LVG+V    L  +  +   GR     
Sbjct: 2   DVVTVPVDLTVDEVLALMFGERHRGYPVVDDG-RLVGIV---TLADIRRVPAEGREAT-- 55

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
                                   +VGD+MT  PV       L DA + + E    RLPV
Sbjct: 56  -----------------------VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPV 92

Query: 214 VDADGKLVGIITRGNVVRA 232
           VD  G+LVGI++R +++RA
Sbjct: 93  VDDSGRLVGIVSRSDLLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 79.0 bits (195), Expect = 5e-19
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 34/130 (26%)

Query: 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162
           T D+ LE+L E +++G PV+    +LVG+++  DLL                       +
Sbjct: 11  TRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-----------------------R 47

Query: 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVG 222
              E Q  L          LMT  P  V    ++++AA+L++E   RR+PVVD DGKLVG
Sbjct: 48  NPEEEQLAL----------LMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVG 96

Query: 223 IITRGNVVRA 232
           I+T  ++VRA
Sbjct: 97  IVTVADIVRA 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 84.9 bits (211), Expect = 7e-19
 Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 33/129 (25%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P TT+ EAL ++    I+G PV+D++ KLVG++++ D+                F E 
Sbjct: 100 VTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR---------------F-ET 143

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDAARLLLETKYRRLPVVDA 216
           D            LS+     V ++MT   +V V E T LE+A  LL E +  +LPVVD 
Sbjct: 144 D------------LSQP----VSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD 187

Query: 217 DGKLVGIIT 225
           +G+L G+IT
Sbjct: 188 NGRLKGLIT 196

Length = 486

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 78.7 bits (194), Expect = 9e-19
 Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 33/148 (22%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V D MT   ++  VKP T+V +AL ++ E  ++  PV+DD  KLVG++++ D+L   +  
Sbjct: 1   VKDIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDILRALAAG 57

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
           G                                 V ++MT   V V   T LE+A  L++
Sbjct: 58  GKRLLP----------------------------VKEVMTKPVVTVDPDTPLEEALELMV 89

Query: 205 E-TKYRRLPVVDADG-KLVGIITRGNVV 230
           E  K RRLPVVD DG KLVGIIT  +++
Sbjct: 90  ERHKIRRLPVVDDDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 78.3 bits (194), Expect = 1e-18
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 27/139 (19%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
           ++  V+P  TV EA +++ EK I    V+DD  +LVG+ S+ D++    ++  G +    
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVR--KVALRGASALDT 59

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
                                    V ++MT   + V     +++A  L+ E ++R LPV
Sbjct: 60  ------------------------PVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPV 95

Query: 214 VDADGKLVGIITRGNVVRA 232
           VD  GKLVGI++ G+VV+A
Sbjct: 96  VD-GGKLVGIVSIGDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 77.3 bits (191), Expect = 4e-18
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
           ++  V P T+++EA  +L   RI   PV+D D +LVG+V+  DL  L      GR     
Sbjct: 3   DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDL--LRHARPDGRRPLRG 60

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
                   +T               VGD+M+P  V VR  T + +   LL +  +  +PV
Sbjct: 61  RLRGRDKPET---------------VGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPV 105

Query: 214 VDADGKLVGIITRGNVVRA 232
           VD D +LVGI+T+ +++ A
Sbjct: 106 VDEDRRLVGIVTQTDLIAA 124

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 76.2 bits (188), Expect = 1e-17
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 17/137 (12%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRADNSMFP 155
            V PTT + EA +I+V       PV+D+   KLVG+++  D+L                 
Sbjct: 5   TVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKY--------------- 49

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
            +    K          +   + V  +MT   + +    +++DAA L+LE +   LPVVD
Sbjct: 50  -LGGGEKFNKIKTGNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD 108

Query: 216 ADGKLVGIITRGNVVRA 232
            DGKLVGI+T  ++++A
Sbjct: 109 DDGKLVGIVTERDLLKA 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 71.0 bits (175), Expect = 2e-16
 Identities = 29/54 (53%), Positives = 37/54 (68%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           V D+MTP  V V   T+LE+A  L+ E    RLPVVD DGKLVGI+T  +++RA
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRA 54

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 71.7 bits (176), Expect = 3e-16
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 34/137 (24%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
             V P  TV + ++++ E    GFPV+D+  K+VG+VS  DLL  D              
Sbjct: 5   ITVSPDNTVKDVIKLIKETGHDGFPVVDNG-KVVGIVSARDLLGKDPD------------ 51

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
                                + V ++M+   VV     ++ DAAR++  T   +LPVVD
Sbjct: 52  ---------------------ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVD 90

Query: 216 ADGKLVGIITRGNVVRA 232
            +  LVGIIT  +V+R+
Sbjct: 91  ENNNLVGIITNTDVIRS 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 71.4 bits (176), Expect = 4e-16
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 27/136 (19%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V P  T+ EA  ++ E  +   PV ++D +LVG+V+D D+  + +++  GR  ++    
Sbjct: 5   TVSPDDTIREAARLMREHDVGALPVCEND-RLVGIVTDRDI-VVRAVA-EGRDPDTTT-- 59

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                                 VGD+MT   V V E  ++++AARL+ E + RRLPVVD 
Sbjct: 60  ----------------------VGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD 97

Query: 217 DGKLVGIITRGNVVRA 232
           DG+LVGI++ G++ RA
Sbjct: 98  DGRLVGIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 71.5 bits (176), Expect = 4e-16
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 28/131 (21%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            +   T ++E L+++       FPV+DDD +LVG+VS  D+  +            +F  
Sbjct: 5   TIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI------------LFDP 52

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                     +  L+      +  D+MT  PVVV    +LEDA +   ++ Y +LPVVD 
Sbjct: 53  ---------SLYDLV------VASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD 97

Query: 217 D-GKLVGIITR 226
           D GKL+GI++R
Sbjct: 98  DPGKLLGILSR 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 74.7 bits (184), Expect = 8e-16
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 34/150 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V + M+ K  L  V+P  T+ EA ++  EK I G PV+DDD K+VG++           
Sbjct: 173 KVKNLMSKK--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGII----------- 218

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARL 202
                              T +++ K ++  N    V D M    + + E  ++ DA RL
Sbjct: 219 -------------------TLSDIAKAIANGNLDAKVSDYMRKNVITINEDEDIYDAIRL 259

Query: 203 LLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           + +    RL V D++GK VGIITR +++  
Sbjct: 260 MNKNNVGRLLVTDSNGKPVGIITRTDILTR 289

Length = 294

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 69.1 bits (170), Expect = 3e-15
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 24/134 (17%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           EE+  V+ T T+  AL +L +   +  PV+D + K VG +S  D+L              
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-------------- 46

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                   WK        L +     V D+M     V+ +  ++E+   LL++  +  LP
Sbjct: 47  --------WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQPF--LP 96

Query: 213 VVDADGKLVGIITR 226
           VVD DG  +GIITR
Sbjct: 97  VVDDDGIFIGIITR 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 68.7 bits (169), Expect = 4e-15
 Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 38/139 (27%)

Query: 97  VVKPTTTVDEALEIL-----VEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 151
            V+   TV EALE L       + I    V+D++ +L+G+VS  DLL          AD 
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL---------LADP 51

Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
                                      V D+M    + V    + E+ ARL  +     L
Sbjct: 52  D------------------------TPVSDIMDTDVISVSADDDQEEVARLFEKYDLLAL 87

Query: 212 PVVDADGKLVGIITRGNVV 230
           PVVD +G+LVGIIT  +V+
Sbjct: 88  PVVDEEGRLVGIITVDDVI 106

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 68.8 bits (169), Expect = 5e-15
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 19/140 (13%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           + +  V P   V  A  ++++  I+  PVI+   KLVG+V++ D+           A  S
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGG-KLVGIVTEKDI---------ADALRS 50

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
             P V               +     V D+MT   + +   T++ D A L+LE     LP
Sbjct: 51  FRPLVRDR--------HQERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLP 102

Query: 213 VVDADGKLVGIITRGNVVRA 232
           VVD DGKLVGI+TR +++R 
Sbjct: 103 VVD-DGKLVGIVTRTDILRY 121

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 72.8 bits (179), Expect = 7e-15
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 36/140 (25%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSM 153
            + P TTV + LE++  K I+G PV++D     KLVG+++  D+  +             
Sbjct: 92  TISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV------------- 138

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDAARLLLETKYRRLP 212
                              K  GK V ++MT   V+ V E  +LE+A ++L E +  +LP
Sbjct: 139 -------------------KDKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLP 179

Query: 213 VVDADGKLVGIITRGNVVRA 232
           VVD +G+LVG+IT  ++V+ 
Sbjct: 180 VVDKNGELVGLITMKDIVKR 199

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 18/135 (13%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V+    ++E  EI  + +     V++D+ +LVG++SD D L   S            P +
Sbjct: 6   VEMDDRLEEVREIFEKHKFHHLLVVEDN-ELVGVISDRDYLKAIS------------PFL 52

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
            +  +T  ++  L      +    +MT  P+ V   T +++A++LLLE     LPVVD +
Sbjct: 53  GTAGETEKDLATLN-----RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDEN 107

Query: 218 GKLVGIITRGNVVRA 232
           G+L+GIIT  ++++ 
Sbjct: 108 GQLIGIITWKDLLKY 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 66.0 bits (162), Expect = 5e-14
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 31/134 (23%)

Query: 93  EELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 150
           + L +V P T++ +AL  +  K   +T   V+D+D +LVG+ +D DL          RA 
Sbjct: 2   DALPLVSPDTSLKDALLEMSRKGLGMTA--VVDEDGRLVGIFTDGDL---------RRA- 49

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR 210
                           ++K L       V D+MT  P  +       +A  L+ E K   
Sbjct: 50  ----------------LEKGLDILTLP-VADVMTRNPKTIDPDALAAEALELMEENKITA 92

Query: 211 LPVVDADGKLVGII 224
           LPVVD +G+ VG++
Sbjct: 93  LPVVDDNGRPVGVL 106

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 64.9 bits (159), Expect = 1e-13
 Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 27/129 (20%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V PTTTV EA +++ EKR++   V+D + KLVG+ +  D+                   
Sbjct: 5   TVSPTTTVQEAAKLMREKRVSCVLVMDGN-KLVGIFTSKDI------------------- 44

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                     V + L      +V  +MTP PV     T + +A  L+++ K+R LPVVD 
Sbjct: 45  ------ALRVVAQGLD-PESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK 97

Query: 217 DGKLVGIIT 225
            G++VG++ 
Sbjct: 98  SGQVVGLLD 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 33/140 (23%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           E+   +  T TV +  E+  E   + FPV+D+  K+VG+V+  D+            D  
Sbjct: 2   EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAG---------KDPD 52

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                     +  +MT  P+ V   T++   A +++      LP
Sbjct: 53  T------------------------TIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLP 88

Query: 213 VVDADGKLVGIITRGNVVRA 232
           VVD + KL+GII+R +V++A
Sbjct: 89  VVDDNKKLLGIISRQDVLKA 108

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 37/141 (26%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGRADNSM 153
           V+ P  TV + LEI  +K  +   +  D     KL+G+V+  D+  +   S         
Sbjct: 108 VLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKS--------- 158

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRL 211
                                    V ++MTP    VV     +LE+A  +L E++  +L
Sbjct: 159 -----------------------TPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKL 195

Query: 212 PVVDADGKLVGIITRGNVVRA 232
           P+V+ +G+LV +++R ++ + 
Sbjct: 196 PIVNDNGELVALVSRSDLKKN 216

Length = 495

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSISGSGRADN 151
           E++  V P  ++   ++ + +  +    V+DD+ K VG+++  DL  A    +  G    
Sbjct: 1   EDIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKK 60

Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
           S+  +  +  K +  V K +         D+MT   + V    ++ DAA+L+LE     L
Sbjct: 61  SIKMKRKAGQKRYRYV-KEVPLV----AEDIMTEEIITVSPNDDVVDAAKLMLEANISGL 115

Query: 212 PVVDADGKLVGIITRGNVVRA 232
           PVVD +  +VG+IT+ ++ R 
Sbjct: 116 PVVD-NDNIVGVITKTDICRE 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 63.4 bits (155), Expect = 4e-13
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 41/144 (28%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVS--DYDLLALDSISGSGRAD 150
            V+ P  TV + LEI  +K  +G PV +D     KL+G+V+  D D L            
Sbjct: 5   SVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETP------ 58

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKY 208
                                       + ++MTP    VV      LE+A  +L E+K 
Sbjct: 59  ----------------------------LSEVMTPREVLVVAPTGITLEEANEILRESKK 90

Query: 209 RRLPVVDADGKLVGIITRGNVVRA 232
            +LP+V+ DG+LV ++TR ++ + 
Sbjct: 91  GKLPIVNDDGELVALVTRSDLKKN 114

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 34/139 (24%)

Query: 96  HVVK--PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
           + V   P  T+ EA++++ +K++    V+D D KL+G+VS      L+S+          
Sbjct: 3   NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVS------LESL---------- 46

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
                       +  K       K + D+M      V+   +L D   L+L+   + +PV
Sbjct: 47  -----------EQAYK-----EAKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPV 90

Query: 214 VDADGKLVGIITRGNVVRA 232
           VD DGKLVG+ITR ++V  
Sbjct: 91  VDEDGKLVGLITRSSLVDT 109

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 28/135 (20%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P TTV EA  I+ E  I G  ++ D+ K VG++++ DL+                   
Sbjct: 6   VDPDTTVYEAANIMTENNI-GRLIVVDNEKPVGIITERDLVKK----------------- 47

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                    V     K     VG++M+   + +    +L +AA+L+ +   +RLPVVD D
Sbjct: 48  ---------VVSRNLKPREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVD-D 97

Query: 218 GKLVGIITRGNVVRA 232
            +LVGI+T  ++V  
Sbjct: 98  DELVGIVTTTDIVMG 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 33/160 (20%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TV D MT  E+   ++ T TV++ L+++ +   + FPV++   K+VG+V+  D+L     
Sbjct: 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK-- 246

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                          ST  T  +V               MT  P+ VR  T++   A+++
Sbjct: 247 --------------PST--TIEKV---------------MTKNPITVRAKTSVASVAQMM 275

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMG 243
           +      LPVVD++  L+GIITR +V+++   I+   ++G
Sbjct: 276 IWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQVG 315

Length = 432

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  V P T+++EALE++ E  I+  PV+D+D KLVG+V+  DLL
Sbjct: 1   VKDIMTPD--VVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLL 52

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 32/145 (22%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
             V P TTV EALE+     I+G PV +D   L GLV                   S   
Sbjct: 93  VTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVG---------------IRTSRDI 137

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
           +  S                   V   MT   V   E   LE+A  +L E K  +LP+VD
Sbjct: 138 DFLSK----------------VSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVD 181

Query: 216 ADGKLVGIITRGNVVRAALQIKHAT 240
            DG+LVG+ITR ++ +A     +A+
Sbjct: 182 DDGELVGLITRKDIEKAR-DYPNAS 205

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 59.1 bits (144), Expect = 3e-12
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
            V V   T LE+A  LL E   RRLPVVD +G+LVGI+TR ++++A  
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 60.5 bits (147), Expect = 5e-12
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 35/140 (25%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
            +   + P  +V  A  ++ + RI G PV++D  KLVG+++  D+               
Sbjct: 1   RDPITIDPLDSVGRAARLMEKHRIGGLPVVEDG-KLVGIITSRDVRR------------- 46

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                   ++V D MT   V +    +L +A RL+ E K  RLP
Sbjct: 47  -AHP-------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLP 86

Query: 213 VVDADGKLVGIITRGNVVRA 232
           V+  + KLVGIIT+G +   
Sbjct: 87  VLR-ERKLVGIITKGTIALE 105

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 64.1 bits (156), Expect = 6e-12
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 22/140 (15%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V   T++D A ++L E RI   PV+D+  +LVG+V+  DLL          A  S F   
Sbjct: 258 VSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLL--------KHARPSPF--- 306

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                     Q+L        V  +MT   V VR  T   +    L +     LPV+DA 
Sbjct: 307 ----------QRLRFLRPPT-VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAA 355

Query: 218 GKLVGIITRGNVVRAALQIK 237
           GKLVGI+++ +++ A  +  
Sbjct: 356 GKLVGIVSQTDLIAALYRNW 375

Length = 382

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           V D+MT   + V+  T++ DA  L+ E     +PVVD DGKLVGIIT  +++RA
Sbjct: 1   VKDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRA 53

Length = 117

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 40/152 (26%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
           T G  MTT  E   +    TVDEAL+ + E+      I    V+D+  KL+G+VS  DLL
Sbjct: 133 TAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL 190

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
                     A+                            + DLM    V V    + E+
Sbjct: 191 ---------TAEPDEL------------------------LKDLMEDDVVSVLADDDQEE 217

Query: 199 AARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
            ARL  +     +PVVD D +L+GIIT  +++
Sbjct: 218 VARLFEKYDLLAVPVVDEDNRLIGIITIDDII 249

Length = 451

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 32/141 (22%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSISGSGRADN 151
           + L  + P  T+ EA  +     I G PV+DD  KLVG+V+  D+  A+           
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDG-KLVGIVTLSDIAHAIARG-------- 51

Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
                                    K V D+MT   + + E   L DA RL+ +    RL
Sbjct: 52  ---------------------LELAK-VKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRL 89

Query: 212 PVVDADGKLVGIITRGNVVRA 232
            V D +G+ VGIITR +++R+
Sbjct: 90  IVTDDEGRPVGIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 37/138 (26%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            +    ++ EA ++++E+ I   PV+D+D +LVG+V+ +D                    
Sbjct: 6   TISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWD-------------------- 45

Query: 157 VDSTWKTFNEVQKLLSK---TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
                         +SK    + K V D+MT   +       ++ AAR +       LPV
Sbjct: 46  --------------ISKAVARDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPV 91

Query: 214 VDADGKLVGIITRGNVVR 231
           VDA+ +++GIIT  ++ +
Sbjct: 92  VDAENRVIGIITSEDISK 109

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 28/136 (20%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V P T++ EA +++ E+ +    V+D D + +G+V++ D++   ++  +G   +     
Sbjct: 5   TVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVR--AV-AAGIDLD----- 56

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                                 V ++MT   V V     + +AA+L+ +   R   VVD 
Sbjct: 57  --------------------TPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK 96

Query: 217 DGKLVGIITRGNVVRA 232
            G+LVG+I+  ++VR 
Sbjct: 97  GGELVGVISIRDLVRE 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 33/138 (23%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
             V+P  T++EA E+L+    T  PV++   ++VG++S  D                   
Sbjct: 5   KTVRPEATIEEARELLLRYGHTALPVVEGG-RVVGIISRRD------------------- 44

Query: 156 EVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 214
                      V+K L    G   V D M+   V V   T L +   L++E    R+PVV
Sbjct: 45  -----------VEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVV 93

Query: 215 DADGKLVGIITRGNVVRA 232
           + DG+LVGI+TR +++R 
Sbjct: 94  E-DGRLVGIVTRTDLLRT 110

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 18/134 (13%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL--LALDSISGSGRADN 151
           ++  +     V +A +++ +  I+G PV+D+  KL+G +S  DL  L L         D 
Sbjct: 2   KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPD------DL 55

Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
            ++  +          +K       K          +    ++ L++    L+  K  R+
Sbjct: 56  LLYRTI----TFKELSEKFTDSDGVKSRP------LITCTPSSTLKEVITKLVANKVHRV 105

Query: 212 PVVDADGKLVGIIT 225
            VVD +GK +G+IT
Sbjct: 106 WVVDEEGKPIGVIT 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 55.2 bits (134), Expect = 4e-10
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 34/134 (25%)

Query: 96  HVVKPTTTVDEALEIL-VEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154
            +V P  ++ +AL  +          V+D++ +L+G V+D D                  
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVL-VVDENGRLLGTVTDGD------------------ 45

Query: 155 PEVDSTWKTFNEVQKLLSKTNG--KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                       +++ L K       V ++M   P+  +  ++ E+   L+ E   R LP
Sbjct: 46  ------------IRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLP 93

Query: 213 VVDADGKLVGIITR 226
           ++D +G++VG+ T 
Sbjct: 94  ILDEEGRVVGLATL 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 244
            V V     + +A RL+LE     LPVVD DG+LVGI+T  +++RA  +      +  
Sbjct: 3   VVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 54.5 bits (132), Expect = 7e-10
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 29/136 (21%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
              P T++ EA   + E+RI+   V+DD  + +G+V++ D+L L                
Sbjct: 5   TCPPDTSLAEAASRMRERRISSIVVVDDG-RPLGIVTERDILRLL--------------- 48

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                                 VG++M+   + V   T+L DA +L+ E   R L VVD 
Sbjct: 49  -------------ASGPDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD 95

Query: 217 DGKLVGIITRGNVVRA 232
           DG+L+G++++ ++++ 
Sbjct: 96  DGELLGLLSQTDLLQN 111

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   MT    +  + P  ++ +A E+++EKR+ G PV+DDD KLVG+V++ DLL
Sbjct: 72  VRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 35/139 (25%)

Query: 97  VVKPTTTVDEALEILVEKRITGFP-VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
            + P  TV +AL  L+ KR  G   V+D++ + VG+V++ D   +D  +           
Sbjct: 101 TLSPDDTVGDALA-LLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFT----------- 148

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
                                  V D+M+   V +   T+  +A  LL   + +  PVVD
Sbjct: 149 ----------------------QVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD 186

Query: 216 ADGKLVGIITRGNVVRAAL 234
           ADG+LVG++TR   +RA +
Sbjct: 187 ADGRLVGVLTRTGALRATI 205

Length = 479

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237
            + V++   L D   +LL  K   +PVVD +G++VGI++ G+++R   + K
Sbjct: 3   VITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGK 53

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query: 184 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233
           T   V V   T++ +AARL+L+     LPVVD DG+LVGI++ G+++R A
Sbjct: 1   TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRA 50

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 18/123 (14%)

Query: 110 ILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK 169
           +++E   TG PV+    +L+G+++  D++   S+  +   D        S       V+K
Sbjct: 18  LMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVR-TSVEDQQRTQTKASP-----TVEK 71

Query: 170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 229
           ++S           TP   V  + + +  A  L+LE    RLPVV+   +LVGI+ R +V
Sbjct: 72  IMS-----------TPVYSVTPDDS-IATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDV 119

Query: 230 VRA 232
           ++A
Sbjct: 120 LKA 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 30/136 (22%), Positives = 65/136 (47%), Gaps = 20/136 (14%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
             +P T + + L++LVE+R++  P++D++ K+V + S +D++ L        A    +  
Sbjct: 5   TARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL--------AKEGAYNN 56

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
           +D T      V + L +   +    + T           L     L+++ +  RL VVD 
Sbjct: 57  LDLT------VGEALERR-SQDFEGVRT-----CSPDDCLRTIFDLIVKARVHRLVVVDE 104

Query: 217 DGKLVGIITRGNVVRA 232
           + ++ GII+  ++++ 
Sbjct: 105 NKRVEGIISLSDILQF 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 55.6 bits (135), Expect = 6e-09
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236
           V DL    PV V   T+L++A  L+ E   + LPVVD +GKL+G+++  ++ RA + I
Sbjct: 70  VRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDI 127

Length = 546

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233
           P+ V   T+L +A +L+ E   RRLPVVD  GKLVGI+T  ++  A+
Sbjct: 3   PITVTPDTSLMEALKLMKENSIRRLPVVD-RGKLVGIVTDRDLKLAS 48

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239971 cd04598, CBS_pair_GGDEF_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 31/138 (22%)

Query: 93  EELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYDLLALDSISGS-GRAD 150
                V P TTV++ LE       ++   V+DD  + VGL+    L+ L  +S   GRA 
Sbjct: 1   RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDG-RPVGLIMREALMEL--LSTPYGRA- 56

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR 210
                              L  K   K V ++M P P++V   T LE+ +RL      + 
Sbjct: 57  -------------------LYGK---KPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQN 94

Query: 211 LP---VVDADGKLVGIIT 225
           L    +V  +G+ +GI T
Sbjct: 95  LYDGFIVTEEGRYLGIGT 112

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 119

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT  E L      T+++EALE+L E +I   PV+DD+ KL GL+
Sbjct: 55  PVSEVMT-PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLI 102

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           P P V+  TT L +AA  L+E+K+    VVD DG +VGIIT  +++RA
Sbjct: 1   PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRA 48

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 32/138 (23%)

Query: 97  VVKPTTTVDEAL-EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
            V    T+ E + E ++      F V+D++ + VG++S  DL A   I  S  A  +   
Sbjct: 5   TVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRA---IPTSQWAQTT--- 58

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPV 213
                                  V  +MTPA   V V    +L +  +LL E     L V
Sbjct: 59  -----------------------VIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAV 95

Query: 214 VDADGKLVGIITRGNVVR 231
           V+  G+++G+IT  +++R
Sbjct: 96  VEDSGQVIGLITEADLLR 113

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 29/132 (21%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           + P  T+D+A + L+      FPV+D D  LVGL++  DL+   +++  G          
Sbjct: 6   LSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLI--RALAEGGPDA------- 56

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                               + G +    P V    T L+   RL+ +     +PVVD  
Sbjct: 57  -------------------PVRGVMRRDFPTVSPSAT-LDAVLRLMQQGGAPAVPVVDGS 96

Query: 218 GKLVGIITRGNV 229
           G+LVG++T  NV
Sbjct: 97  GRLVGLVTLENV 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 27/136 (19%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
             V   T +  A+  +        PV+DD  +LVG+++ YD+L+         A  S   
Sbjct: 4   SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLS--------YALES--- 52

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
                        + L       V ++M    + +    ++  A  L+      RLPV+D
Sbjct: 53  -------------EELKDAK---VREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLD 96

Query: 216 ADGKLVGIITRGNVVR 231
             GK+ GI+T  +++R
Sbjct: 97  DKGKVGGIVTEDDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT KE L  V   TT++EALE+L E RI   PV+DD+ +L GL+
Sbjct: 148 PVSEVMT-KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195

Length = 486

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 48.7 bits (117), Expect = 3e-08
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V P TT++EALE+L E  I   PV+D++ +LVG+V+  D++
Sbjct: 4   TVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 34/144 (23%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVI----DDDWKLVGLVSDYDLLALDSISGSGR 148
             +  +    TV EAL+++ E  ++   V      D +   G+V+  D+L          
Sbjct: 1   PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAY---GIVTMRDIL---------- 47

Query: 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 208
               +  E     +                V ++MT   + V    +++  ARL+  T  
Sbjct: 48  --KKVVAEGRDPDRV--------------NVYEIMTKPLISVSPDMDIKYCARLMERTNI 91

Query: 209 RRLPVVDADGKLVGIITRGNVVRA 232
           RR PVV+ + +L+GII+  ++  A
Sbjct: 92  RRAPVVE-NNELIGIISLTDIFLA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 30/134 (22%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
            ++  V P  TV +A+E + E  ++  PV+DD  ++VG + + DLL            ++
Sbjct: 1   GDVVSVAPDDTVSQAIERMREYGVSQLPVVDDG-RVVGSIDESDLL------------DA 47

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
           +                         V ++M      V     +E+ + LL   +     
Sbjct: 48  LIEGKAKFSLP---------------VREVMGEPLPTVDPDAPIEELSELL--DRGNVAV 90

Query: 213 VVDADGKLVGIITR 226
           VVD  GK VGIITR
Sbjct: 91  VVDEGGKFVGIITR 104

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 49.8 bits (120), Expect = 4e-08
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 31/134 (23%)

Query: 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159
           P TT+ EA  ++ E R++   V+DD  +LVG+V+D DL                      
Sbjct: 8   PDTTIREAARLMTEHRVSSLLVVDDG-RLVGIVTDRDLR--------------------- 45

Query: 160 TWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
                N V  +    +    V ++MT  P+ +     + +A  L+LE     LPVVD DG
Sbjct: 46  -----NRV--VAEGLDPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVD-DG 97

Query: 219 KLVGIITRGNVVRA 232
           +LVG+I+  +++R 
Sbjct: 98  RLVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 49.5 bits (119), Expect = 5e-08
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 225
            V +  TT + +A  L+ E K R LPVVD +G+LVGI+T
Sbjct: 3   VVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVT 41

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 36/143 (25%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
            ++ V P T + EA+  + E+ +    V++   +LVGL+                     
Sbjct: 2   TIYTVAPETLLSEAVATMAEQDLGSLVVMERG-ELVGLL--------------------- 39

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKM----VGDLMTPAPVVVRETTNLEDAARLLLETKYR 209
                    TF EV + +++    +    V  +M P P+V     ++++  RL++E   R
Sbjct: 40  ---------TFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLR 90

Query: 210 RLPVVDADGKLVGIITRGNVVRA 232
            LPV+D  G L+G+I+  +V +A
Sbjct: 91  YLPVLD-GGTLLGVISFHDVAKA 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 184 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233
           +   V V   T+LE+A  LL   + + LPVVD D +LVGI+T+ +++R A
Sbjct: 1   SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHA 50

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 188 VVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVR 231
           V V  TT + +AA++++   +RRLPVVD   GKLVGIIT  ++++
Sbjct: 4   VTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILK 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V D MT       + P     EALE++ E +IT  PV+DD+ + VG++  +DLL 
Sbjct: 60  PVADVMTRNP--KTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 19/46 (41%), Positives = 32/46 (69%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
            V + E  ++++AA+L++E     LPVVD DG+LVGI+T  ++ +A
Sbjct: 4   VVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKA 49

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 179 VGDLM-TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231
           V  +M T   V   +   LED   ++L+++YR  PVVD DGK+VG+I+R +++ 
Sbjct: 248 VSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|239967 cd04594, CBS_pair_EriC_assoc_archaea, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 36/135 (26%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           VK    V EA  I++E  +   PV+D + K +G V   D+                    
Sbjct: 6   VKDYDKVYEAKRIMIENDLLSLPVVDYN-KFLGAVYLKDIENATYGD------------- 51

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                                V D +      VR T+  E+A  ++++ K R  PVVD D
Sbjct: 52  ---------------------VVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-D 89

Query: 218 GKLVGIITRGNVVRA 232
           GK  GI+T  +++ A
Sbjct: 90  GKFKGIVTLDSILDA 104

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 104

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
              V + E  +L DA  L+ E + R LPVV+ DGKLVG++T+ +++RAAL 
Sbjct: 1   SPVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALS 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V + MT +EE+  V     ++EAL++L E RI   PV+D + +LVGL++  D++ 
Sbjct: 145 VSEVMT-REEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D+M+T  ++  V P T + E  E++VE  I G   + +D +LVG+V+  DLL
Sbjct: 58  VKDYMST--DVVTVPPDTPLSEVQELMVEHDI-GRVPVVEDGRLVGIVTRTDLL 108

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein

 Score = 49.9 bits (119), Expect = 4e-07
 Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 34/138 (24%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            + P  TV +A+  L+ KR  G  V+  + + VGLV+D DLL +D  +            
Sbjct: 100 TLAPHDTVSDAMA-LIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFT------------ 146

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                                 V D+M+   V     T    A  LL        P+VDA
Sbjct: 147 ---------------------QVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA 185

Query: 217 DGKLVGIITRGNVVRAAL 234
           DG L GI+TR   +RA +
Sbjct: 186 DGTLAGILTRTGALRATI 203

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 46.7 bits (112), Expect = 6e-07
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 31/133 (23%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRADNS 152
           ++  +    T++E LE++ E   + FPV D D   ++G+V   DLL              
Sbjct: 2   DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRA------------ 49

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                            L        + DL+ P P+ V E+T L+D    + + +     
Sbjct: 50  -----------------LAEGEEDLDLRDLLRP-PLFVPESTPLDDLLEEMRKERSHMAI 91

Query: 213 VVDADGKLVGIIT 225
           VVD  G   G++T
Sbjct: 92  VVDEYGGTAGLVT 104

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V   MTT E+L        +++  E++++ R   +PV+D+D K+VG++S Y LL+
Sbjct: 248 VSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT   ++  V P  TV+EA  ++ E RI   PV++D  +LVG++++ DLL
Sbjct: 68  PVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVEDG-RLVGIITETDLL 119

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   MT  E+L       T++EA EIL E +I   P++DDD +LVGL++  D+ 
Sbjct: 142 KVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIE 196

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 179 VGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           + ++MT     V      +LE+A  +L ++K  +LP+V+ DG+LV ++TR +V R 
Sbjct: 165 LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220

Length = 505

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYD 136
           V DFMT  E+L      TT+ EA +I+ + ++   P++D +  LV LV   DYD
Sbjct: 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYD 216

Length = 502

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 226
           P+ V     + +A  L+ E     LPVVD DGKLVGI+T 
Sbjct: 4   PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTN 43

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239955 cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 34/140 (24%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
            E   V+P   + +AL ++ +  +    V+D D + +G V+  +                
Sbjct: 1   TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREA--------------- 45

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                              ++ +G   GD   P  V V    +L      +       LP
Sbjct: 46  -------------------ARASGGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLP 86

Query: 213 VVDADGKLVGIITRGNVVRA 232
            VD DG+ VG +T+ ++   
Sbjct: 87  CVDEDGRYVGEVTQRSIADY 106

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 106

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 29/140 (20%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V D M T + L ++ PTT+  +AL  + EKR+    V D++ +LVG+ +D DL       
Sbjct: 157 VKDLMQTTD-LPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLR------ 209

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
              RA         S                   V D MT  P   +    L +A   L 
Sbjct: 210 ---RALLG----GGSLKSE---------------VRDFMTLGPKTFKLDALLLEALEFLE 247

Query: 205 ETKYRRLPVVDADGKLVGII 224
             K   L VVD   K++G++
Sbjct: 248 RRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
             P+       + DAARLL E K    PV+D  GKLVGI++  ++++ 
Sbjct: 1   KNPITCNADDTISDAARLLRENKISGAPVLD-GGKLVGIVSESDILKL 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVID 123
           +     +    AA    +  V + MT    +  V P T ++EALE++VE  +I   PV+D
Sbjct: 44  IITERDILRALAAGGKRLLPVKEVMTKP--VVTVDPDTPLEEALELMVERHKIRRLPVVD 101

Query: 124 DD-WKLVGLVSDYDLL 138
           DD  KLVG+++  D+L
Sbjct: 102 DDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + MT +E L V     T++EA EIL E +    P+++DD +LV LV+  DL 
Sbjct: 58  PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.4 bits (106), Expect = 4e-06
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVGD MT    +  V     VDEA  ++ E ++   PV+DDD +LVG+VS  DL 
Sbjct: 59  TVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
           PV      ++ +A   LL++K    PVVD +G LVG ++  + ++  L+
Sbjct: 3   PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLE 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
            V + MT +E+L V     +++EA E+L E R    P+++D+ +LV LVS  DL    
Sbjct: 160 PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217

Length = 495

>gnl|CDD|239970 cd04597, CBS_pair_DRTGG_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 21/47 (44%), Positives = 25/47 (53%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 225
           V D++   PV  R    L +A  L+ E   R LPVVD DG   GIIT
Sbjct: 60  VRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIIT 106

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               MT       V P T VDEA ++L+E  I+  PV+D++ +L+G+++  DLL
Sbjct: 69  AHQIMTRD--PITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 29/138 (21%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
           V+  TT + EA E L+E +     V+D D  +VG+++  DLL                  
Sbjct: 5   VLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL-----------------R 47

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
                +           T       L+T     V     L  A   +     R+LPVVD 
Sbjct: 48  ALEADEAGEPSAVDEVAT-----PPLLT-----VHPDEPLAHALDRMASRGLRQLPVVDR 97

Query: 217 D--GKLVGIITRGNVVRA 232
              G+++G++TR NV+ A
Sbjct: 98  GNPGQVLGLLTRENVLLA 115

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239981 cd04608, CBS_pair_PALP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 18/129 (13%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V PT T  EA+EIL EK     PV+D+  K++G+V+  +LL+  S+S SG+   S  P  
Sbjct: 7   VLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLS--SLS-SGKVQPSD-PVS 62

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
            + +K F  V K  + T GK+   L T A ++V              E         +  
Sbjct: 63  KALYKQFKRVNK--NDTLGKLSRILETDAFLLV------------FFEQISSAAIGKEKQ 108

Query: 218 GKLVGIITR 226
            K +GI+T+
Sbjct: 109 EKPIGIVTK 117

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  ++P T+V +   +++E  I G PV+DD  KLVG+V+  D+L
Sbjct: 69  VSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDG-KLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 149 ADNSMFPEVDSTWKTF---NEVQKLLS----KTNGKMVGDLMTPA--PVVVRETTNLEDA 199
           A+    P + +++ TF     + K LS    K +   V D+MTP      +RET  +ED 
Sbjct: 153 ANEKGLPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDW 212

Query: 200 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
             L+ +T + R PVV+   K+VG++T  +V+  
Sbjct: 213 LDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK 245

Length = 432

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 34/154 (22%)

Query: 80  SGVYTVGDFMTTKEELHVVK-PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           S V+             + K        AL+++ ++R+    V+D   KLVG+V      
Sbjct: 236 SQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVD----- 290

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
            ++SI  + +                              + D++      V   T L +
Sbjct: 291 -VESIKQARKKAQG--------------------------LQDVLIDDIYTVDAGTLLRE 323

Query: 199 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
             R +L+   + +PVVD D +LVGI+TRG++V A
Sbjct: 324 TVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDA 356

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 157 VDSTWKTFNEVQKLLSKTNGKMV--GDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 214
           VD    T   + + L +     +    +M    V V    ++ D   L+ +    +LPV+
Sbjct: 43  VDPRLSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVI 102

Query: 215 DADGKLVGIITRGNVVRAALQ 235
           + D K+VG IT  ++VRA L+
Sbjct: 103 EED-KVVGSITENDIVRALLE 122

Length = 187

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 240
           P  V V     +++   L+   ++R  PVVD DG+LVGI+T  ++ R   + + AT
Sbjct: 1   PDVVTVPVDLTVDEVLALMFGERHRGYPVVD-DGRLVGIVTLADIRRVPAEGREAT 55

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 181 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 226
           D+M+   V V   T+++ A +LL E + + LPV+D   +LVGI+T+
Sbjct: 249 DIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQ 294

Length = 382

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 30/148 (20%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           VG+  T       V P  ++ +A   + ++ ++   V+DD   L+G+V+  DL       
Sbjct: 151 VGEVKTLP--AVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLR------ 202

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
              R                  +    SKT  + V ++MT   + V     L +A  ++L
Sbjct: 203 --SRV-----------------IADGRSKT--QKVSEVMTSPVISVDRGDFLFEAMLMML 241

Query: 205 ETKYRRLPVVDADGKLVGIITRGNVVRA 232
             + + LPV + DG+ +GI+T  +++R 
Sbjct: 242 RNRIKHLPVTE-DGQPLGILTLTDILRL 268

Length = 610

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 20/144 (13%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--ALDSISGSGRAD 150
           E++  V+   +V +A+ +L E  I+  PV+DD+ KL G+V+ +D++   +     +   D
Sbjct: 1   EDVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGD 60

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR 210
            S             E +++L       V D M+   +      ++ DA   +LE     
Sbjct: 61  RS------------GEKERMLD----LPVYDAMSSPVITASPNDSVRDAVDRMLENDDSS 104

Query: 211 LPVV--DADGKLVGIITRGNVVRA 232
           + VV  D D K+VGI+T+ +V+RA
Sbjct: 105 VVVVTPDDDTKVVGILTKKDVLRA 128

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239964 cd04591, CBS_pair_EriC_assoc_euk_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 44/140 (31%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLL-ALDSISGSGRADNS 152
           ++    TV++   +L      GFPV+D      +LVG +    L+ AL +          
Sbjct: 6   LLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKNY--------- 56

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                         + P+P  V   T+LE   +L  +   R L 
Sbjct: 57  ------------------------------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLL 86

Query: 213 VVDADGKLVGIITRGNVVRA 232
           VVD +G+LVGIITR ++++A
Sbjct: 87  VVD-EGRLVGIITRKDLLKA 105

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 105

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.3 bits (98), Expect = 4e-05
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
              + VR    + +AA+L+ E     + VVD  G+LVGI +  ++VR 
Sbjct: 1   RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRK 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            VG+ M+T   L  + P  +++EA +++ +  I   PV+DDD +LVG+V+  D++
Sbjct: 59  PVGEVMSTP--LITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 37/146 (25%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS 142
           TV + MT + ++  +  T TV+E +E+++E   +  PV D D   ++G+V   DLL    
Sbjct: 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRA-- 264

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
                                      LL   +   +  L+ P P+ V ET +L D   L
Sbjct: 265 ---------------------------LLDGQSDLDLRVLVRP-PLFVPETLSLSD---L 293

Query: 203 LLETKYRRLP---VVDADGKLVGIIT 225
           L E +  R     VVD  G + G++T
Sbjct: 294 LEEFREERTHMAIVVDEYGGVEGLVT 319

Length = 429

>gnl|CDD|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 181 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 240
           +L+ PA  VV  T ++ D  R+ LE   + L VVD DG+  G +   ++    L  +  T
Sbjct: 451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTT 510

Query: 241 EMGA 244
           +  A
Sbjct: 511 DKTA 514

Length = 574

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT  +++  + P  ++++A E++V  +I   PV++D  +LVG+V+  D++
Sbjct: 91  VRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDG-RLVGIVTRGDII 141

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 188 VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236
             V++T  L  A  +L +  Y  +PV+D +GK VG I+  +++     +
Sbjct: 4   AYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGL 52

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239987 cd04614, CBS_pair_1, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           SG+ T  D +  K E+      TTV E  + +   RI   P+I+ + KL+GL+ D+DLL
Sbjct: 37  SGIITERDLIA-KSEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 96

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 32/140 (22%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
           VV+  T+V +A+  L  + +    V+D+D  LVG+VS  DLL   SI G           
Sbjct: 5   VVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKA-SIGG----------- 52

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVV 214
                    ++QK+        VG +MT  P         ++ +AA+ L+E +   LPVV
Sbjct: 53  --------ADLQKV-------PVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVV 97

Query: 215 DADG---KLVGIITRGNVVR 231
           +      +++G IT+ N+ +
Sbjct: 98  EKVDEGLEVIGRITKTNITK 117

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 91  TKEELHV-----VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 145
           T ++LH+     V PT TV +A+EIL E      PV+ +  K++G V+  +LL+      
Sbjct: 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK 395

Query: 146 SGRAD------NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVR 191
           +   D      +  F ++    +  +++ K L K +  +V +   P  VV +
Sbjct: 396 ANPDDAVSKVMSKKFIQIGEG-EKLSDLSKFLEKNSSAIVTEEGKPIGVVTK 446

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           V DL  PAPV V  T  + DA  +L E  + +LPVV   GK++G +T   ++ A
Sbjct: 337 VKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSA 390

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 186 APV-VVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           +PV  VR    +E+A  LLL   +  LPVV+  G++VGII+R +V +A
Sbjct: 2   SPVKTVRPEATIEEARELLLRYGHTALPVVE-GGRVVGIISRRDVEKA 48

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            V D     ++   V P T++ EA  ++ E  +   PV+D++ KL+GLVS  DL
Sbjct: 69  QVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDL 120

Length = 546

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           TV   MT   +L  V    ++ E L++L E+ +    V++D  +++GL+++ DLL  
Sbjct: 58  TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLRR 114

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 196 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233
           L+DAA  LL T     PVVD DG LVG++TR +++RA 
Sbjct: 12  LDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRAL 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239981 cd04608, CBS_pair_PALP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231
            APV V  T    +A  +L E  + +LPVVD  GK++G++T GN++ 
Sbjct: 2   KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLS 48

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239987 cd04614, CBS_pair_1, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233
              V E T L  A R++     + LPV+D DGKL GIIT  +++  +
Sbjct: 3   VPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 96

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V P   V EA +++VE  I   PV+DD  KLVG+V+  D++ 
Sbjct: 64  TVSPDDDVKEAAKLMVENNIRRVPVVDDG-KLVGIVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 19/39 (48%), Positives = 23/39 (58%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 225
           PV V   T L +A  L+       +PVVD +GKLVGIIT
Sbjct: 97  PVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIIT 135

Length = 486

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            V   MT           T V EAL ++V+ +    PV+D   ++VGL+ 
Sbjct: 59  LVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLD 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            ++ D M   E++  V+P  ++ + L +++++     PV+D+D KLVGL++
Sbjct: 54  KSLEDIM--LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 225
            V + E T L +   ++  +     PVVD DG+LVGI++
Sbjct: 3   VVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVS 41

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
            V V   T++ +AA+L+ E     + VVD D + +GI+T  ++VRA
Sbjct: 3   VVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRA 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 188 VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
           ++V    ++ DA R + +   R + VVD +G+L+G +T G++ RA L+
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLK 52

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            VG+ M++   L  V   T++ +A +++ E  I    V+DDD +L+GL+S  DLL 
Sbjct: 57  PVGEVMSSP--LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV   M+T   ++ V P  ++  A+E+++E  I   PV+++  +LVG+V  +D+L
Sbjct: 68  TVEKIMSTP--VYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLA 139
              D MT      VV P  ++++AL+   +      PV+DDD  KL+G++S  DLL+
Sbjct: 59  VASDIMTKPPV--VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
           P  V   T++  A   +  +  R LPVVD   +LVGIITR +V+  AL+
Sbjct: 3   PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +++  V    T+DEAL+I+ EK+I   PV+DD+ KL+G+V   D+L
Sbjct: 64  SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDDN-KLIGVVRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 38/156 (24%)

Query: 79  SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                T    M +   +  V P  ++ + + ++ +K I+  PVI++D K+VG +++ D+ 
Sbjct: 61  EKTRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEED-KVVGSITENDI- 116

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN---GKMVGDLMTPAPVVVRETTN 195
                                       V+ LL          V ++M      V    +
Sbjct: 117 ----------------------------VRALLEGMESIRSLRVREVMGEPFPTVSPDES 148

Query: 196 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231
           L   ++LL   +     +V  +GK+VGIIT+ ++++
Sbjct: 149 LNVISQLL---EEHPAVLVVENGKVVGIITKADIMK 181

Length = 187

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 36/138 (26%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS 146
           DF T  E+        ++ EAL  +++       V D++ KL G+V+  D+L LD     
Sbjct: 2   DFPTIDED-------ASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLD----- 49

Query: 147 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLET 206
                                  L      K V ++++     V E   +++A  ++ E 
Sbjct: 50  -----------------------LFESFLEKKVFNIVSQDVFYVNEEDTIDEALDIMREK 86

Query: 207 KYRRLPVVDADGKLVGII 224
           +  RLPVVD D KL+G++
Sbjct: 87  QIGRLPVVD-DNKLIGVV 103

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.7 bits (88), Expect = 9e-04
 Identities = 31/138 (22%), Positives = 66/138 (47%), Gaps = 31/138 (22%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P T V +A+ ++ ++  +   ++ +  +L+G+ ++ D++ L +I      D S  P  
Sbjct: 6   VTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAI----GKDLSDLP-- 59

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED---AARLLLETKYRRLPVV 214
                                +G++MT  PVV  + + ++D   A  L  + + R LPV+
Sbjct: 60  ---------------------IGEVMT-QPVVTLQESEIQDIFTALSLFRQHQIRHLPVL 97

Query: 215 DADGKLVGIITRGNVVRA 232
           D  G+L+G++T  ++ + 
Sbjct: 98  DDQGQLIGLVTAESIRQV 115

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 81  GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           GV TV D MTT  E+  V P  ++ +  +++++ +   +PV+DD  KLVG +S  D+L 
Sbjct: 58  GVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDG-KLVGQISRRDVLR 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           VGD MT         P  T+ +AL+ + E+ I   PV+DD  +LVG+VS  DLL
Sbjct: 58  VGDVMTRD--PVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237
            + +     L +AARL         PVVD DGKLVGI+T  ++  A  +  
Sbjct: 3   LITLNPNATLREAARLFNTHHIHGAPVVD-DGKLVGIVTLSDIAHAIARGL 52

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 75  SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSD 134
           S A +    +V D MT    +    P   +D A   +    I+  PV+D + +++G+++ 
Sbjct: 47  SKAVARDKKSVEDIMTRN--VITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITS 104

Query: 135 YDLLAL 140
            D+  L
Sbjct: 105 EDISKL 110

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 188 VVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQ 235
           V +     LE+   L+ E+ + R PV D D   ++G++   +++RA  +
Sbjct: 4   VALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE 52

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 44/138 (31%)

Query: 98  VKPTTTVDEALEILVEKRITG---FPVIDD---DWKLVGLVSDYDL-LALDSISGSGRAD 150
           + P  T+ + L++   K  TG     V +D     KL+G+V+  D  ++  S+       
Sbjct: 110 LTPDNTLADVLDL---KEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLD------ 160

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKY 208
                                       V D MTP    V   E T L++A  ++ + K 
Sbjct: 161 --------------------------TKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKL 194

Query: 209 RRLPVVDADGKLVGIITR 226
             LP+VD +G LV ++ R
Sbjct: 195 NTLPIVDKNGNLVYLVFR 212

Length = 502

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 188 VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMG 243
           + VRE  ++  A  +L E    RLPVVD +GKL GI+TR ++V   ++ +     G
Sbjct: 4   ITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTG 59

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 179 VGDLMTPAPVV----VRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
           V D +          + E     DA    L      LPVVD DG+ +G +TR +++
Sbjct: 251 VADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLL 306

Length = 309

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 188 VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
              R  T L D   +L+E +   LP+VD +GK+V + +R +V+  A +
Sbjct: 4   ATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKE 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V DFMT   +    K    + EALE L  ++IT   V+DD  K++G++
Sbjct: 221 EVRDFMTLGPK--TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|129495 TIGR00400, mgtE, Mg2+ transporter (mgtE)

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
           +  +M  +   +    + E+ ARL+ +  +  +PVVD +G+LVGI+T  +++
Sbjct: 197 LSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDII 248

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer [Transport and binding proteins, Cations and iron carrying compounds]. Length = 449

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
COG2524	294	Predicted transcriptional regulator, contains C-te	99.82
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.79
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.74
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.74
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.73
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.72
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.72
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.71
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.71
COG4109	432	Predicted transcriptional regulator containing CBS	99.71
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.7
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.7
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.7
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.69
COG3620	187	Predicted transcriptional regulator with C-termina	99.69
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.69
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.68
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.68
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.68
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.67
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.67
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.67
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.67
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.67
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.67
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.67
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.67
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.66
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.66
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.66
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.66
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.66
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.65
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.65
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.65
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.65
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.65
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.65
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.65
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.65
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.64
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.64
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.64
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.64
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.64
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.64
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.64
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.64
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.64
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.64
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.63
PRK11573	413	hypothetical protein; Provisional	99.63
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.63
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.63
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.63
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.63
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.63
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.62
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.62
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.62
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.62
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.62
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.61
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.61
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.61
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.61
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.6
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.6
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.6
COG2905	610	Predicted signal-transduction protein containing c	99.6
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.6
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.6
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.59
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.59
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.58
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.58
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.58
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.56
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.56
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.55
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.55
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.55
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.54
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.52
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.52
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.52
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.49
COG0517	117	FOG: CBS domain [General function prediction only]	99.48
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.47
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	99.44
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.38
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.37
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.28
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.1
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.1
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.09
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.05
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	99.04
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.71
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.68
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.65
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.57
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.51
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.51
COG2524	294	Predicted transcriptional regulator, contains C-te	98.48
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.48
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.48
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.47
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.47
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.46
COG3620	187	Predicted transcriptional regulator with C-termina	98.45
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.42
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.42
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.41
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.37
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.36
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.35
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.35
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.33
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.32
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.32
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.32
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.31
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.31
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.31
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.3
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.3
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.29
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.28
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.27
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.27
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.26
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.26
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.26
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.26
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.25
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.25
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.24
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.24
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.23
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.23
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.23
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.22
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.22
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.21
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.21
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.2
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.2
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.2
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.19
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.19
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.19
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.18
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.17
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.17
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.16
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.16
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.16
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.13
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.12
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.11
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.1
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.1
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.1
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.09
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.08
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.08
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.08
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.08
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.07
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.06
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.05
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.05
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.04
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.04
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.04
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.02
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.02
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.99
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.98
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.96
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.93
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.92
COG0517	117	FOG: CBS domain [General function prediction only]	97.88
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.86
COG2905	610	Predicted signal-transduction protein containing c	97.86
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.85
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.8
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.79
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	97.77
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	97.76
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.72
PRK11573	413	hypothetical protein; Provisional	97.71
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.66
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.58
COG4109	432	Predicted transcriptional regulator containing CBS	97.45
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.25
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.09
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	96.95
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.63
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.86
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	95.4
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	94.89
KOG2118	498	consensus Predicted membrane protein, contains two	94.52
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	93.42
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	89.54
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	89.26
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	89.13
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	88.44

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.82  E-value=1.5e-19  Score=145.04  Aligned_cols=124  Identities=33%  Similarity=0.481  Sum_probs=113.1

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (245)
                      ....+|+++|++  ++.++.+++|+.++.++|.+++++++||+|++ +++|++|..|+..+...                
T Consensus       169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~----------------  229 (294)
T COG2524         169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIAN----------------  229 (294)
T ss_pred             cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHc----------------
Confidence            355689999999  89999999999999999999999999999965 99999999999986421                


Q ss_pred             cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                   ......|.++|.++++++..|+.+.+|+++|..++..++.|+|.+|+++|+||+.|+++.+..
T Consensus       230 -------------g~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         230 -------------GNLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             -------------CCccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence                         224788999999999999999999999999999999999999999999999999999998864

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.79  E-value=1.1e-18  Score=142.66  Aligned_cols=202  Identities=24%  Similarity=0.317  Sum_probs=144.7

Q ss_pred             ccccCCCCCCCCCCcccccc--cccccCCCCchhhhhhhhccCCccc-ccccccccccccccccCCCCCCCCcceecccc
Q 025984           13 ARLRAPPAGRTSGRTSFALQ--LPCLLLSRPGCRVFSVLATSSDRVS-ALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (245)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   89 (245)
                      .+=.||-+|..++-+.-++.  -|.....-...++-..+.++...+. .+.+...+-.+..+..  ....+..++-.+||
T Consensus       174 ~~r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa--~~R~~~~LtcadIM  251 (382)
T COG3448         174 TRRTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQA--LRRRMGELTCADIM  251 (382)
T ss_pred             hcCCCCCccCCCcccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHH--HHHHhccccHHHhc
Confidence            34455555555554333332  2233334444555555556655322 2222221111110100  12345778999999


Q ss_pred             cCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHH
Q 025984           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK  169 (245)
Q Consensus        90 ~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (245)
                      ++  +++++..++++.++.++|.++++..+||+|++.+++|+|+..|+.+..                  .|..|+.+  
T Consensus       252 Sr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a------------------~~~p~qrl--  309 (382)
T COG3448         252 SR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA------------------RPSPFQRL--  309 (382)
T ss_pred             Cc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhcc------------------CcchHHHh--
Confidence            99  999999999999999999999999999999999999999999999742                  12222222  


Q ss_pred             HHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984          170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT  240 (245)
Q Consensus       170 ~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~  240 (245)
                        .......++.+|++...++.++++..+++..|.+.+.+++||+|++|+++||||..|++.++.......
T Consensus       310 --r~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~~~  378 (382)
T COG3448         310 --RFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWSQH  378 (382)
T ss_pred             --hccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHHHh
Confidence              234567899999998999999999999999999999999999999999999999999999988766543

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.74  E-value=2.6e-17  Score=139.69  Aligned_cols=129  Identities=22%  Similarity=0.372  Sum_probs=111.9

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      .+...+|+++|+++.++.+++.++++.++.+.+.+++++.+||++++ ++++|+|+.+|++.+...              
T Consensus        63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~--------------  128 (292)
T PRK15094         63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS--------------  128 (292)
T ss_pred             ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc--------------
Confidence            56788999999997789999999999999999999999999999876 789999999999864210              


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                     ......+.++|.+ +.++++++++.++++.|++.+.+.+||+|++|.++|+||.+|+++++....
T Consensus       129 ---------------~~~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei  192 (292)
T PRK15094        129 ---------------DAEAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEI  192 (292)
T ss_pred             ---------------cCCcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCC
Confidence                           0012346778876 668999999999999999999999999999999999999999999998653

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.74  E-value=6e-17  Score=118.02  Aligned_cols=109  Identities=26%  Similarity=0.350  Sum_probs=95.2

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++++++++.++.+.|.+++.+.++|+|++|+++|+|+..|+.....                             ..
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~~   52 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-----------------------------ND   52 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-----------------------------cc
Confidence            4678899999999999999889999999998899999999999986310                             00


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|..++.++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++
T Consensus        53 ~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          53 YETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             ccccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            1135688889888899999999999999999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.73  E-value=6.9e-17  Score=143.18  Aligned_cols=127  Identities=21%  Similarity=0.265  Sum_probs=112.1

Q ss_pred             CCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcc
Q 025984           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (245)
Q Consensus        78 ~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~  156 (245)
                      -.+.+++|+++|+|+.++.+++.++++.++.+.+.+++++++||++++ ++++|+|+.+|++....              
T Consensus       186 l~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~--------------  251 (408)
T TIGR03520       186 VSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN--------------  251 (408)
T ss_pred             hccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc--------------
Confidence            367889999999998899999999999999999999999999999875 68999999999985421              


Q ss_pred             ccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                       ....++.++|.+ +.+|++++++.++++.|++.+.+.++|+|++|..+|+||.+|+++++...
T Consensus       252 -----------------~~~~~l~~~~~~-~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivge  313 (408)
T TIGR03520       252 -----------------KKNFDWQSLLRE-PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGD  313 (408)
T ss_pred             -----------------cCCCCHHHHcCC-CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCC
Confidence                             012356777765 88999999999999999999999999999999999999999999999754

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.72  E-value=4.8e-17  Score=140.35  Aligned_cols=121  Identities=25%  Similarity=0.286  Sum_probs=107.5

Q ss_pred             cceecccccCCCc--eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984           82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (245)
Q Consensus        82 ~~~v~~im~~~~~--~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (245)
                      ..+|+++|++  +  ++++++++++.++.+.|.+++...+||+|++|+++|+|+..|+.+.....               
T Consensus       196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~---------------  258 (321)
T PRK11543        196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG---------------  258 (321)
T ss_pred             HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC---------------
Confidence            6799999998  6  99999999999999999988889999999999999999999998642110               


Q ss_pred             cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                                   .....++.++|.+++.++.+++++.++++.|.+.+..++||+|++|+++|+||++|++++
T Consensus       259 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        259 -------------GALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             -------------CCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence                         012456889999999999999999999999999999999999988999999999999875

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.72  E-value=1.3e-16  Score=116.68  Aligned_cols=111  Identities=24%  Similarity=0.337  Sum_probs=96.3

Q ss_pred             eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhc
Q 025984           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (245)
Q Consensus        95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (245)
                      +.++++++++.++.+.|.+++...+||+|++|+++|+|+..|+.++.....                          ...
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~--------------------------~~~   56 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCG--------------------------GPG   56 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcC--------------------------CCc
Confidence            578899999999999999999999999999999999999999986421100                          011


Q ss_pred             cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ...++.++|..+++++.+++++.++++.|.+.+..++||+|++|+++|+|+++|+++
T Consensus        57 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          57 CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            246788899888999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.71  E-value=1.4e-16  Score=113.82  Aligned_cols=94  Identities=32%  Similarity=0.465  Sum_probs=86.1

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      ++.++++++++.++.+.|.+++++.+||+|++ |+++|+|+..|+.++.                               
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------------   50 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------------   50 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence            47899999999999999999999999999975 8999999999998631                               


Q ss_pred             hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHHHH
Q 025984          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVR  231 (245)
Q Consensus       173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-g~~vGiIt~~dll~  231 (245)
                         .          +.++.+++++.+++++|.+++.+++||+|++ |+++|+||.+|++.
T Consensus        51 ---~----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          51 ---R----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             ---e----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence               0          7789999999999999999999999999987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.71  E-value=2e-16  Score=142.02  Aligned_cols=123  Identities=29%  Similarity=0.423  Sum_probs=110.4

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      .+..+++.++|..  ++.++++++++.++.+.|.+++++.+||+|++|+++|+|+.+|+....                 
T Consensus        85 ~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~-----------------  145 (479)
T PRK07807         85 VVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD-----------------  145 (479)
T ss_pred             HHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc-----------------
Confidence            4456788899988  899999999999999999999999999999999999999999986421                 


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                      ...++.++|+.+++++++++++.+++++|.+++.+++||+|++|+++|+||++||++.....
T Consensus       146 ----------------~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        146 ----------------RFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             ----------------cCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence                            13568899999999999999999999999999999999999889999999999999876543

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.71  E-value=8.1e-17  Score=134.71  Aligned_cols=127  Identities=31%  Similarity=0.519  Sum_probs=117.7

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      +-.+|.|+|+|.++...+..++++.+..++..+.++.+|||+|...+++|+|+.+|+...                    
T Consensus       186 dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~--------------------  245 (432)
T COG4109         186 DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK--------------------  245 (432)
T ss_pred             heeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC--------------------
Confidence            456999999988889999999999999999999999999999999999999999999864                    


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT  240 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~  240 (245)
                                   ..+.++..+|+++|.+|.+.+++..+.+.|.=.+++.+||+|++++++|+||++|+++.+...+.+.
T Consensus       246 -------------~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qp  312 (432)
T COG4109         246 -------------KPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQP  312 (432)
T ss_pred             -------------CCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCC
Confidence                         3478999999999999999999999999999999999999999999999999999999988766554

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.70  E-value=3.2e-16  Score=115.62  Aligned_cols=119  Identities=21%  Similarity=0.379  Sum_probs=92.6

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+..+......            ..+.  .....    
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~------------~~~~--~~~~~----   63 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY------------NNLD--LTVGE----   63 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcc------------cccc--CCHHH----
Confidence            57889999999999999999999999999988999999999999875310000            0000  00000    


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                        .....+.|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||++|++++
T Consensus        64 --~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~  120 (120)
T cd04641          64 --ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF  120 (120)
T ss_pred             --HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence              001223455567899999999999999999999999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.70  E-value=3.1e-16  Score=113.48  Aligned_cols=105  Identities=31%  Similarity=0.510  Sum_probs=95.3

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++..|+....                                
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~--------------------------------   50 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD--------------------------------   50 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc--------------------------------
Confidence            678899999999999999998889999999989999999999997531                                


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                       ...++.++|...+.++.+++++.++++.|.+.+...+||++++|+++|+||..|+++
T Consensus        51 -~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          51 -PDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             -ccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence             145788889888999999999999999999999999999998899999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.70  E-value=2.5e-16  Score=136.23  Aligned_cols=124  Identities=27%  Similarity=0.375  Sum_probs=106.4

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ..++|+++|.+..+++++++++++.++.+.|.+++.+.+||+|++|+++|+|+..|+.++... +.              
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~-~~--------------  264 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM-GI--------------  264 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhc-CC--------------
Confidence            677999999852268999999999999999998888888888989999999999999864210 00              


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                                  .....++.++|.+++.++.+++++.+++++|.+++.+++||++ +|+++|+||++|++++
T Consensus       265 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        265 ------------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             ------------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence                        0124679999999999999999999999999999999999998 6899999999999875

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.69  E-value=6.6e-16  Score=111.13  Aligned_cols=104  Identities=25%  Similarity=0.426  Sum_probs=93.3

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++++++++.++.++.+.|.+++.+.+||+|++|+++|+++..|+....                                
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~--------------------------------   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS--------------------------------   49 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence            477899999999999999988999999999889999999999998641                                


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                        ..++.++|.+.+.++.+++++.++++.|.+.+...+||+|++|+++|+||++|+++
T Consensus        50 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          50 --GGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             --ccchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence              23467788877888999999999999999999999999998899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.69  E-value=1.9e-16  Score=118.56  Aligned_cols=123  Identities=24%  Similarity=0.369  Sum_probs=105.7

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ..+++..+|+.  +++.+.+++++.+++++|.+++++.+||+++ |+++|-|+..++.++.....               
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---------------  124 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---------------  124 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---------------
Confidence            56789999999  8999999999999999999999999999997 78999999999998642111               


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                 +...+..+.++|...+++|+++.++..+.+++..++  .+.|++ +|+++||||+.|+++.+..
T Consensus       125 -----------e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e-~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         125 -----------ESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVE-NGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             -----------cchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe-CCceEEEEeHHHHHHHHhc
Confidence                       112356789999999999999999999999987765  466775 8999999999999998764

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=6e-16  Score=113.88  Aligned_cols=111  Identities=30%  Similarity=0.373  Sum_probs=94.3

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++++++++.++.+.|..++...+||+|++|+++|+|+..|+.++.....                           .
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~---------------------------~   54 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA---------------------------D   54 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC---------------------------C
Confidence            4788999999999999999899999999998899999999999987531100                           0


Q ss_pred             ccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD---GKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~---g~~vGiIt~~dll~  231 (245)
                      ....++.++|..  .+.++.+++++.+++++|.+++.+++||+|++   |+++|+||.+|+++
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            124567778874  68899999999999999999999999999876   69999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.68  E-value=8.1e-16  Score=113.82  Aligned_cols=122  Identities=34%  Similarity=0.600  Sum_probs=98.3

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++.+++++.++.+.|.+++++.+||++++|+++|+|+..|+.........           .+.+..+    +  ..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~-----------~~~~~~~----~--~~   65 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGR-----------RPLRGRL----R--GR   65 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhccccc-----------chhhhhh----h--cc
Confidence            67889999999999999999999999999988999999999999865321100           0000000    0  01


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      ....++.++|...+.++.+++++.+++++|.+.+.+.+||+|++|+++|+||.+|++++
T Consensus        66 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~  124 (124)
T cd04600          66 DKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             cccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence            23457888998889999999999999999999999999999988999999999999863

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=7.8e-16  Score=112.45  Aligned_cols=111  Identities=26%  Similarity=0.381  Sum_probs=95.2

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      ++..+.+++++.++++.|.+.+++.+||+|++ |+++|+++..|++++....+.                          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~--------------------------   55 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR--------------------------   55 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC--------------------------
Confidence            57889999999999999998899999999987 899999999999874311000                          


Q ss_pred             hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      .....++.++|..+++++.+++++.+++++|.+.+...+||+|+ |+++|+|++.|+++
T Consensus        56 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          56 DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            01235688889888999999999999999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=6e-16  Score=112.26  Aligned_cols=109  Identities=30%  Similarity=0.450  Sum_probs=95.4

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++.+++++.++.+.|.+.+...+||+|++|+++|+|+..|+.+....                             .
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-----------------------------~   52 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE-----------------------------G   52 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh-----------------------------c
Confidence            46788999999999999988888999999988999999999999864210                             1


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|..++.++.+++++.++++.|.+.+..++||++++|+++|+||.+|+.+
T Consensus        53 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          53 GPDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             CCCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            1235788889888999999999999999999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.67  E-value=1.7e-15  Score=109.36  Aligned_cols=106  Identities=34%  Similarity=0.524  Sum_probs=94.8

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..++++.++.++.+.|.+.++..+||+|++|+++|+++..|+....                                
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~--------------------------------   50 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY--------------------------------   50 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh--------------------------------
Confidence            577899999999999999999999999999889999999999998641                                


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|...+.++.+++++.++++.|.+.+..++||++++|+++|+||.+|+++
T Consensus        51 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          51 KEAKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             hcCCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            1135678888888999999999999999999999999999998899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.67  E-value=1.5e-15  Score=111.07  Aligned_cols=112  Identities=31%  Similarity=0.412  Sum_probs=95.6

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+.+++++.++.+.|.+.++..+||+|++|+++|+++..|+........                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------~   54 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------A   54 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence            4678899999999999999999999999999899999999999987531000                           0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEEhHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRA  232 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~--g~~vGiIt~~dll~~  232 (245)
                      ....++.++|..++.++.+++++.+++++|.+.+...+||+|++  |+++|+||.+|++++
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          55 GEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             cccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence            01334778888889999999999999999999999999999977  799999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.7e-15  Score=110.00  Aligned_cols=111  Identities=36%  Similarity=0.630  Sum_probs=95.1

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+.++.++.++.+.|.+.+++.+||+|++|+++|+++..|+.++......                          .
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~--------------------------~   55 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA--------------------------S   55 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC--------------------------C
Confidence            57789999999999999999999999999988999999999999875321100                          0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|..++.++.+++++.++++.|.+.+.+++||+++ |+++|+||.+|+++
T Consensus        56 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          56 ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            0134688889888999999999999999999999999999996 99999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.67  E-value=1.9e-15  Score=110.12  Aligned_cols=109  Identities=23%  Similarity=0.396  Sum_probs=94.4

Q ss_pred             eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhc
Q 025984           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (245)
Q Consensus        95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (245)
                      ..++++++++.++.+.|.+.+...++|+|++|+++|+++..|+..+....                            ..
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~~   55 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------LS   55 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC----------------------------CC
Confidence            56789999999999999988999999999889999999999987642100                            01


Q ss_pred             cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ...++.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+||.+|++.
T Consensus        56 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          56 LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            135688889888899999999999999999999999999998899999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.67  E-value=4.7e-16  Score=143.96  Aligned_cols=131  Identities=21%  Similarity=0.279  Sum_probs=112.7

Q ss_pred             CCCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcc
Q 025984           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (245)
Q Consensus        77 ~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~  156 (245)
                      ...+..++|+|+|++  +..++++++++.++.+.|.+++.+.+||+|++|+++|+|+.+|+.+......           
T Consensus       441 ~~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~-----------  507 (574)
T PRK01862        441 RERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR-----------  507 (574)
T ss_pred             hhHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc-----------
Confidence            345678899999998  7889999999999999999999999999999999999999999986421000           


Q ss_pred             ccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEEhHHHHHHHH
Q 025984          157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRAAL  234 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~--g~~vGiIt~~dll~~~~  234 (245)
                                      ...+.++.++|+++++++++++++.+++++|.+++.+++||+|++  ++++|+||++|+++++.
T Consensus       508 ----------------~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        508 ----------------DTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             ----------------ccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                            012357889999989999999999999999999999999999876  48999999999999986


Q ss_pred             Hh
Q 025984          235 QI  236 (245)
Q Consensus       235 ~~  236 (245)
                      +.
T Consensus       572 ~~  573 (574)
T PRK01862        572 RM  573 (574)
T ss_pred             hh
Confidence            53

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.6e-15  Score=107.85  Aligned_cols=94  Identities=23%  Similarity=0.501  Sum_probs=86.3

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      +++.+.+++++.++++.|.+++...+||+|++|+++|+++..|+...                                 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~---------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK---------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence            57889999999999999998999999999988999999999999853                                 


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                        .         .+.++.+++++.+++++|.+.+.+++||++++|+++|+||++|+++
T Consensus        49 --~---------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          49 --S---------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             --C---------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence              0         1788999999999999999999999999997789999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.67  E-value=2.5e-15  Score=108.83  Aligned_cols=107  Identities=29%  Similarity=0.538  Sum_probs=94.4

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+.+++++.++.+.|.++++..+||+|++|+++|+++..|+.....                               
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~-------------------------------   51 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA-------------------------------   51 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-------------------------------
Confidence            5788999999999999999999999999998899999999999976421                               


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|..++.++.+++++.++++.|.+.+...+||++++|+++|+||+.|+++
T Consensus        52 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          52 RDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             hCccCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            0123477888888999999999999999999999999999998899999999999965

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.67  E-value=9.9e-16  Score=111.82  Aligned_cols=109  Identities=29%  Similarity=0.423  Sum_probs=92.0

Q ss_pred             ceeEECCCCCHHHHHHHHHhcC-CceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~-~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      ++.++++++++.++.+.|.+++ ...+||+|++|+++|+|+..|+.....                             .
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~   52 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT-----------------------------S   52 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-----------------------------h
Confidence            5788999999999999997664 789999998899999999999986421                             0


Q ss_pred             hccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          173 KTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       173 ~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      .....++.++|..  .++++.+++++.++++.|.+.+.+++||+|++|+++|+||.+|+++
T Consensus        53 ~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          53 QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            1123567788864  3568999999999999999999999999997789999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=1.3e-15  Score=111.25  Aligned_cols=115  Identities=31%  Similarity=0.432  Sum_probs=94.0

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      +++++++++++.++.+.|.+++.+.+||+|++|+++|+|+..|+.++......            ..+          ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~------------~~~----------~~   59 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN------------LDL----------ER   59 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc------------hhH----------HH
Confidence            57889999999999999999999999999988999999999999875321000            000          00


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      ....++.++|.+.+.++.+++++.++++.|.+.+  .+||+|++|+++|+||.+|++++
T Consensus        60 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~  116 (116)
T cd04643          60 LVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA  116 (116)
T ss_pred             HhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence            0145788899988999999999999999998765  58999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2e-15  Score=111.40  Aligned_cols=121  Identities=35%  Similarity=0.518  Sum_probs=97.7

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++.+++++.++.+.|.+.+++.+||++++|+++|+++..|+.+....... ...       ...+          ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~-~~~-------~~~~----------~~   63 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLS-DNG-------EESL----------TK   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccc-ccc-------cccc----------cc
Confidence            57889999999999999999999999999988999999999999875321000 000       0000          01


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      ....++.++|..++.++.+++++.++++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus        64 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~  122 (122)
T cd04803          64 ERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL  122 (122)
T ss_pred             ccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence            12467888898889999999999999999999999999999987899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2.9e-15  Score=108.82  Aligned_cols=110  Identities=28%  Similarity=0.456  Sum_probs=95.4

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+++++++.++.+.|.+.++..+||+|++|+++|+++..|++++....                            .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------~   53 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------I   53 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc----------------------------C
Confidence            467899999999999999988999999999889999999999998653110                            0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|..+++++.+++++.++++.|.+.+...+||++++|+++|++|++|+++
T Consensus        54 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          54 DLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             CCccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            1235677888888999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2.2e-15  Score=111.60  Aligned_cols=119  Identities=21%  Similarity=0.219  Sum_probs=91.7

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      ++.++.+++++.++.+.|.+.+++.+||+|++ |+++|+|+..|++++........          ..+.       .. 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~----------~~~~-------~~-   63 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSF----------PGLD-------PL-   63 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhc----------cchh-------hh-
Confidence            57889999999999999998889999999987 89999999999987531100000          0000       00 


Q ss_pred             hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHH
Q 025984          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  230 (245)
Q Consensus       173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll  230 (245)
                      ......+.++|..++.++.+++++.++++.|.+.+.+++||+|++|+++|+||.+|+-
T Consensus        64 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          64 YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            0001122346777888999999999999999999999999999889999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.66  E-value=7.5e-16  Score=114.70  Aligned_cols=113  Identities=26%  Similarity=0.277  Sum_probs=95.5

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++++++++.++.+.|.++++..+||+|++|+++|+++.+|+.......                           ..
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~---------------------------~~   55 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG---------------------------KV   55 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh---------------------------cc
Confidence            578899999999999999999999999999889999999999998642100                           01


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHH---------cCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLE---------TKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~---------~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                      ....++.++|.+++.++.+++++.++.+++..         .+..++||++++|+++|+||..|+++++
T Consensus        56 ~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          56 QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence            23578999999999999999999999996543         3567888999889999999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.65  E-value=2.8e-15  Score=134.56  Aligned_cols=188  Identities=30%  Similarity=0.415  Sum_probs=133.7

Q ss_pred             CeeeeccccccccccCCCCCCCCCCcccccccccccCCCCc---hhhhhhhhccCC-cccccccccccccccccccCCCC
Q 025984            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPG---CRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA   77 (245)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   77 (245)
                      |-+++|.-+.+.--  .....+.-..++...+|++++.+..   .+....+..... .++.++-+.-.....        
T Consensus         6 dv~l~p~~~~~~~~--~~~~~~~~~~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~--------   75 (450)
T TIGR01302         6 DVLLLPGFIDVEPD--DVDLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQ--------   75 (450)
T ss_pred             ceEecccccccCcc--ccccccccccccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHH--------
Confidence            55667765543221  1111222223667788888775432   333344444433 233222111111111        


Q ss_pred             CCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC---CcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMF  154 (245)
Q Consensus        78 ~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~---g~~~Giv~~~dl~~~~~~~~~~~~~~~~~  154 (245)
                       .-.-.+.++.|.+  ++.++++++++.++.+.|.+++++.+||+|++   ++++|+|+.+|+....             
T Consensus        76 -V~~Vk~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-------------  139 (450)
T TIGR01302        76 -VKRVKRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK-------------  139 (450)
T ss_pred             -HhhhccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-------------
Confidence             1123366777877  79999999999999999999999999999987   7999999999997431             


Q ss_pred             ccccccccchhHHHHHHhhccCCccccccc-CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                                         ....++.++|. .+++++++++++.+++++|.+.+.+.+||+|++|+++|+||.+|+++.+
T Consensus       140 -------------------~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       140 -------------------DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             -------------------cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence                               12467889998 4899999999999999999999999999999999999999999999986


Q ss_pred             H
Q 025984          234 L  234 (245)
Q Consensus       234 ~  234 (245)
                      .
T Consensus       201 ~  201 (450)
T TIGR01302       201 K  201 (450)
T ss_pred             c
Confidence            4

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=3.6e-15  Score=111.01  Aligned_cols=124  Identities=23%  Similarity=0.395  Sum_probs=93.1

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++++++++.++.+.|.++++..+||+|++|+++|+++..|++........ ..  . ....     .+.++.   . 
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~-~~--~-~~~~-----~~~~~~---~-   68 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDD-LL--L-YRTI-----TFKELS---E-   68 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcch-hh--c-ccch-----hhhhhh---h-
Confidence            57889999999999999999999999999988999999999999875310000 00  0 0000     000000   0 


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                       .-....+.+..++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++
T Consensus        69 -~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          69 -KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             -hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence             001223456677899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=3.7e-15  Score=108.42  Aligned_cols=110  Identities=25%  Similarity=0.469  Sum_probs=94.8

Q ss_pred             eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhc
Q 025984           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (245)
Q Consensus        95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (245)
                      +..+.+++++.++.+.|.+.+...+||+|++|+++|+++..|+...... +                          ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~-~--------------------------~~~   55 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE-S--------------------------EEL   55 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhh-h--------------------------hhh
Confidence            5778999999999999999999999999988999999999999863210 0                          011


Q ss_pred             cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ...++.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+||..|+++
T Consensus        56 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            245788889888999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=4.9e-15  Score=111.14  Aligned_cols=131  Identities=36%  Similarity=0.583  Sum_probs=99.9

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++++++++.++.+.|.+.++..+||+|++|+++|+++..|+..+....... .....+..     ..+.+ ++.+.+
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~-~~~~~~~~-----~~~~~-~~~~~~   74 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGL-FYVTLLYS-----VIFLD-ESKIKK   74 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCc-cccccccc-----ccccc-hHHHHH
Confidence            578899999999999999988999999999989999999999998754211100 00000000     00011 222333


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      ....++.++|.+++..+.+++++.+++++|.+.+.+.+||+++ |+++|+||.+|++++
T Consensus        75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~  132 (132)
T cd04636          75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS  132 (132)
T ss_pred             HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence            3455888999888999999999999999999999999999997 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.65  E-value=2.6e-15  Score=134.93  Aligned_cols=125  Identities=26%  Similarity=0.384  Sum_probs=110.4

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHh-----cCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCC
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  153 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~-----~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~  153 (245)
                      .+...+++++|++  ++.+++++.++.++.+.|++     .+...++|+|++|+++|+|+.+|+....            
T Consensus       127 ~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~------------  192 (449)
T TIGR00400       127 SYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK------------  192 (449)
T ss_pred             CCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC------------
Confidence            3466799999998  89999999999999999975     3456789999889999999999997531            


Q ss_pred             CccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                                           .+.+++++|.++++++.+++++.++++.|.+++...+||||++|+++|+||.+|+++.+
T Consensus       193 ---------------------~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l  251 (449)
T TIGR00400       193 ---------------------PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVI  251 (449)
T ss_pred             ---------------------CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHH
Confidence                                 24578999999899999999999999999999999999999999999999999999998


Q ss_pred             HHhHH
Q 025984          234 LQIKH  238 (245)
Q Consensus       234 ~~~~~  238 (245)
                      .+...
T Consensus       252 ~~~~~  256 (449)
T TIGR00400       252 QSEAT  256 (449)
T ss_pred             HhhhH
Confidence            87554

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.65  E-value=3.5e-15  Score=134.83  Aligned_cols=188  Identities=24%  Similarity=0.308  Sum_probs=134.5

Q ss_pred             CeeeeccccccccccCCCCCCCCCCcccccccccccCCC---CchhhhhhhhccCC-cccccccccccccccccccCCCC
Q 025984            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSR---PGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA   77 (245)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   77 (245)
                      |-+|+|.-+.+.  +......+.-..++....|++..++   .-.+....+.+... .++.+.-++-.....        
T Consensus        22 dv~l~p~~~~~~--~~~v~~~t~l~~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~--------   91 (495)
T PTZ00314         22 DVILLPGYIDFS--RDDVDLSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVEE--------   91 (495)
T ss_pred             ceEecccccccc--cccccccccccCCcccCCceeecCccccccHHHHHHHHHCCCeEEecCCCCHHHHHHH--------
Confidence            556777766552  2222222333346677888886633   22344445555555 343332222111111        


Q ss_pred             CCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC---CcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMF  154 (245)
Q Consensus        78 ~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~---g~~~Giv~~~dl~~~~~~~~~~~~~~~~~  154 (245)
                       .-.-....+.|..  ++.++++++++.++.++|.++++..+||+|++   |+++|+|+.+|+....             
T Consensus        92 -v~kvk~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-------------  155 (495)
T PTZ00314         92 -VRKVKRFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-------------  155 (495)
T ss_pred             -Hhhcccccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-------------
Confidence             1112245566776  78999999999999999999999999999973   7999999999997421             


Q ss_pred             ccccccccchhHHHHHHhhccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                                         ....++.++|++  ++.++.+++++.+++++|.+.+.+.+||+|++++++|+||++||++.
T Consensus       156 -------------------~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~  216 (495)
T PTZ00314        156 -------------------DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN  216 (495)
T ss_pred             -------------------cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence                               125678999987  78999999999999999999999999999999999999999999987


Q ss_pred             HH
Q 025984          233 AL  234 (245)
Q Consensus       233 ~~  234 (245)
                      ..
T Consensus       217 ~~  218 (495)
T PTZ00314        217 RG  218 (495)
T ss_pred             cc
Confidence            54

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.65  E-value=2.2e-15  Score=109.17  Aligned_cols=102  Identities=39%  Similarity=0.524  Sum_probs=89.8

Q ss_pred             ECCCCCHHHHHHHHHhcC-----CceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984           98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (245)
Q Consensus        98 v~~~~~v~~~~~~~~~~~-----~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      +.+++++.++.+.|.+++     +..+||+|++|+++|+|+.+++....                               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~-------------------------------   50 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD-------------------------------   50 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence            578899999999998776     46899999889999999999987521                               


Q ss_pred             hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                        .+.++.++|.+++.++.+++++.++++.|.+.+..++||+|++|+++|+||..|++++
T Consensus        51 --~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          51 --PDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             --CcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence              1356788888888999999999999999999999999999988999999999999976

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=2.5e-15  Score=111.37  Aligned_cols=123  Identities=33%  Similarity=0.510  Sum_probs=96.9

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      ++.++.++.++.++++.|.+.++..+||+|++ |+++|+|+..|+..+.....              .|.....  ....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~--------------~~~~~~~--~~~~   65 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGE--------------KFNKIKT--GNGL   65 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccc--------------hhccccc--cccc
Confidence            57889999999999999999999999999987 99999999999987532100              0000000  0000


Q ss_pred             hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      .....++.++|.++++++++++++.++++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus        66 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~  125 (125)
T cd04631          66 EAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA  125 (125)
T ss_pred             hhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence            112356788888889999999999999999999999999999977999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=4e-15  Score=112.44  Aligned_cols=132  Identities=25%  Similarity=0.388  Sum_probs=98.1

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccc-hhHHHHHHh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT-FNEVQKLLS  172 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  172 (245)
                      ++.++++++++.++++.|.+.+...+||+|++|+++|+|+..|++........  .  .+ ....+.|+. +........
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~--~--~~-~~~~~~~~~~~~~~~~~~~   76 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNE--R--GL-PKKSIKMKRKAGQKRYRYV   76 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccc--c--cc-chhhhhhhhhccccccccc
Confidence            57889999999999999999999999999999999999999999875321000  0  00 000011110 000000011


Q ss_pred             hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      .....++.++|.+++.++.+++++.++++.|.+.+.+++||+++ |+++|+||.+|+++
T Consensus        77 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          77 KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            12345788999888899999999999999999999999999996 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=4.4e-15  Score=107.76  Aligned_cols=109  Identities=26%  Similarity=0.422  Sum_probs=94.3

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+++++++.++.+.|.+++++.+||+|++|+++|+++..|+..+...                            ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~----------------------------~~   53 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLF----------------------------ES   53 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhh----------------------------cc
Confidence            57889999999999999999999999999988999999999999864210                            00


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|.+++.++.+++++.++++.|.+.+...+||+++ |+++|+||..|+++
T Consensus        54 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          54 FLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             cccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            0134677888888899999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=2.6e-15  Score=109.37  Aligned_cols=112  Identities=38%  Similarity=0.540  Sum_probs=94.9

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++++++++.++.+.|.+.+...+||+|++|+++|+|+..|+.+......                         ...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~-------------------------~~~   56 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESS-------------------------YHC   56 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhh-------------------------hcc
Confidence            4678999999999999999888889999998899999999999986421000                         001


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|..++.++.+++++.++++.|.+.+..++||+|+ |+++|+||.+|+++
T Consensus        57 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          57 DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            1245788889888999999999999999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.64  E-value=6e-15  Score=106.78  Aligned_cols=108  Identities=36%  Similarity=0.500  Sum_probs=94.0

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+++++++.++.+.|.+.+++.+||+++ |+++|+++..|+.++...                             .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~-----------------------------~   51 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIAR-----------------------------G   51 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence            5778999999999999999999999999998 899999999999865210                             0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|..++.++.+++++.++++.|.+.+.+.+||++++|+++|+|+.+|+++
T Consensus        52 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          52 LELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             ccccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            1125677888888899999999999999999999999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.64  E-value=3.8e-15  Score=108.27  Aligned_cols=111  Identities=34%  Similarity=0.563  Sum_probs=96.1

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      +++++++++++.++.+.|.+.++..+||+|++|+++|+++..|+.++.....                           .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~   54 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS---------------------------L   54 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence            5788999999999999999989999999998899999999999986521000                           0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~vGiIt~~dll~  231 (245)
                      ....++.++|.+.+.++.+++++.++++.|.+.+..++||+++ +|+++|+||..|+++
T Consensus        55 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          55 YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            0125788899999999999999999999999999999999997 789999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.64  E-value=5.1e-15  Score=108.16  Aligned_cols=106  Identities=36%  Similarity=0.600  Sum_probs=92.3

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHH
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (245)
                      ++.++.+++++.++.+.|.+++...+||+|+   +|+++|+++..|+....                             
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~-----------------------------   53 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT-----------------------------   53 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence            4678899999999999999888889999997   78999999999987431                             


Q ss_pred             HhhccCCcccccccCCceEecC--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          171 LSKTNGKMVGDLMTPAPVVVRE--TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       171 ~~~~~~~~v~~~m~~~~~~v~~--~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                         ....++.++|...+.++..  ++++.++++.|.+.+..++||++++|+++|+||++|+++
T Consensus        54 ---~~~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          54 ---DSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             ---ccCCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence               0135688889887788866  999999999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.64  E-value=4.6e-15  Score=107.95  Aligned_cols=111  Identities=31%  Similarity=0.415  Sum_probs=95.7

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      +++++++++++.++.+.|.+.+++.+||+|++|+++|+++..++........                           .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~---------------------------~   55 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL---------------------------D   55 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC---------------------------c
Confidence            5778899999999999998888899999998899999999999887531100                           0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|.+.+.++.+++++.+++++|...+...+||++++|+++|+||..||++
T Consensus        56 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          56 ILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             cccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            1134688899888999999999999999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.64  E-value=4.6e-15  Score=134.40  Aligned_cols=165  Identities=31%  Similarity=0.404  Sum_probs=125.1

Q ss_pred             cccccccccccC---CCCchhhhhhhhccCC-cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCC
Q 025984           27 TSFALQLPCLLL---SRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT  102 (245)
Q Consensus        27 ~~~~~~~~~~~~---~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  102 (245)
                      .++...+|++.+   .-.-.++...+.+... .++...-.+-...+.         ...-..++++|..  ++.++++++
T Consensus        36 ~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~---------I~~vk~~~dim~~--~~v~i~~~~  104 (486)
T PRK05567         36 KNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEE---------VRKVKRSESGVVT--DPVTVTPDT  104 (486)
T ss_pred             hhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHH---------HHHhhhhhhcccC--CCeEeCCCC
Confidence            356677888876   3334455555555443 222221111111111         1122357788888  899999999


Q ss_pred             CHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCccccc
Q 025984          103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDL  182 (245)
Q Consensus       103 ~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  182 (245)
                      ++.++.+.|.+++++.+||+|++|+++|+|+.+|+....                                ....++.++
T Consensus       105 tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~--------------------------------~~~~~V~di  152 (486)
T PRK05567        105 TLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET--------------------------------DLSQPVSEV  152 (486)
T ss_pred             CHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc--------------------------------cCCCcHHHH
Confidence            999999999999999999999999999999999997421                                124578889


Q ss_pred             cc-CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          183 MT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       183 m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      |. .+++++.+++++.++++.|.+.+.+.+||+|++|+++|+||.+||++.+.
T Consensus       153 m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        153 MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence            98 67899999999999999999999999999999999999999999998864

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.64  E-value=5.1e-15  Score=107.01  Aligned_cols=106  Identities=44%  Similarity=0.652  Sum_probs=92.8

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+..++++.++.+.|.++++..+||+|++|+++|+++.+++....                                
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~--------------------------------   50 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET--------------------------------   50 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc--------------------------------
Confidence            578899999999999999989999999999889999999999986431                                


Q ss_pred             ccCCcccccccCCceEecC-CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRE-TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~-~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|...+.++.+ ++++.++++.|.+.+.+.+||++++|+++|+||.+|+++
T Consensus        51 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          51 DLDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             cCCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            0145778888776777777 999999999999999999999998899999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.64  E-value=6.9e-15  Score=106.57  Aligned_cols=107  Identities=34%  Similarity=0.550  Sum_probs=94.1

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.+++.+.++.++.+.|.+.++..+||+|+ |+++|+++..|+.....                             ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~-----------------------------~~   52 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALR-----------------------------HG   52 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHh-----------------------------cc
Confidence            5788999999999999999888899999998 89999999999986421                             00


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|...+.++.+++++.+++++|.+.+.+++||++ +|+++|+||..|+++
T Consensus        53 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          53 LGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             cccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            124678888988899999999999999999999999999999 799999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=4e-15  Score=109.73  Aligned_cols=120  Identities=26%  Similarity=0.460  Sum_probs=96.3

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++.+++++.++.+.|.+.+++.+||+|++|+++|+++..|+++......        ...  ..+        ....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~--~~~--------~~~~   63 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRT--------SVE--DQQ--------RTQT   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccc--------ccc--chh--------hhhh
Confidence            5788999999999999999889999999998899999999999986421000        000  000        0000


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|..++.++.+++++.++++.|.+.+.+.+||++++|+++|++|..|+++
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          64 KASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             hccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            1245677888888999999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=99.63  E-value=3.8e-15  Score=132.14  Aligned_cols=131  Identities=15%  Similarity=0.100  Sum_probs=110.7

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      .+.+.+|+++|+|+.++..++.++++.++.+.+.+++++++||++++ ++++|+|+.+|++..... +.           
T Consensus       183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~-~~-----------  250 (413)
T PRK11573        183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE-KK-----------  250 (413)
T ss_pred             ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc-cC-----------
Confidence            67889999999999999999999999999999999999999999765 789999999999864210 00           


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                     ......+.+++. ++.+|++++++.++++.|++.+.+...|+|++|...|+||.+|+++++....
T Consensus       251 ---------------~~~~~~l~~~~r-~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei  314 (413)
T PRK11573        251 ---------------EFTKENMLRAAD-EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF  314 (413)
T ss_pred             ---------------cCCHHHHHhhcc-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence                           000122334544 4889999999999999999999999999999999999999999999998554

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.63  E-value=6.1e-15  Score=106.94  Aligned_cols=108  Identities=27%  Similarity=0.412  Sum_probs=92.2

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      ++.++++++++.++.+.|.+.++..+||++++ |+++|+++..|+..+...                             
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~-----------------------------   52 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE-----------------------------   52 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc-----------------------------
Confidence            57889999999999999998889999999988 999999999999875310                             


Q ss_pred             hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      .....++.+++. ++.++.+++++.+++++|.+.+.+++||++++|+++|+||++|+++
T Consensus        53 ~~~~~~~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          53 GEEDLDLRDLLR-PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             CCCcCCHHHHhc-CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            000134556664 5788999999999999999999999999998899999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.63  E-value=9.2e-15  Score=105.82  Aligned_cols=109  Identities=31%  Similarity=0.514  Sum_probs=94.4

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+++++++.++.+.|.+.+...+||+|+ |+++|+++..|+.++....                            .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~----------------------------~   52 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASG----------------------------P   52 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcC----------------------------C
Confidence            4778999999999999999888889999987 8999999999998753100                            0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus        53 ~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          53 DLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            0246788888888999999999999999999999999999998899999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.63  E-value=4e-15  Score=112.07  Aligned_cols=128  Identities=36%  Similarity=0.645  Sum_probs=97.9

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHH----
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK----  169 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  169 (245)
                      ++.++.+++++.++.+.|.+++++.+||+|++|+++|+++..|+.+......         ......|.......+    
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~   73 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGT---------ERRRARWLDLLAGAEELAA   73 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccC---------cchhhhHHHHhcchHHHHH
Confidence            5788999999999999999999999999998899999999999986421100         000001111000000    


Q ss_pred             HHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       170 ~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ........++.++|.+++.++.+++++.++++.|.+.+.+++||+| +|+++|+||++|+++
T Consensus        74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            0001234578899988899999999999999999999999999999 899999999999976

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.63  E-value=5.9e-15  Score=132.46  Aligned_cols=161  Identities=25%  Similarity=0.327  Sum_probs=123.6

Q ss_pred             ccccccccCCC---CchhhhhhhhccCC-cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           30 ALQLPCLLLSR---PGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        30 ~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      ...+|++++++   .-.+....|.+... .++.++ .+...+.         ..+..+++.++|..  ++.++.+++++.
T Consensus        41 ~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n-~~i~~qa---------e~v~~VKv~eim~~--~pvtv~p~~tI~  108 (475)
T TIGR01303        41 GTTIPLVVANMTAVAGRRMAETVARRGGIVILPQD-LPIPAVK---------QTVAFVKSRDLVLD--TPITLAPHDTVS  108 (475)
T ss_pred             ccccceeeccchhhHHHHHHHHHHHCCCEEEEeCC-CCHHHHH---------HHHhhcchhhcccc--CCeEECCCCCHH
Confidence            34677776633   22333333455555 333332 2222221         23456678888988  799999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccccC
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP  185 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~  185 (245)
                      ++.+.|.+++++.+||+|+ ++++|+|+.+|+....                                 ...++.++|+.
T Consensus       109 eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~~---------------------------------~~~~V~dIMt~  154 (475)
T TIGR01303       109 DAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGVD---------------------------------RFTQVRDIMST  154 (475)
T ss_pred             HHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcCC---------------------------------CCCCHHHHccC
Confidence            9999999999989999885 6899999999986431                                 13578999999


Q ss_pred             CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                      +++++.+++++.+++++|.+++.+++||+|++|+++|+||.+||++.....
T Consensus       155 ~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       155 DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence            999999999999999999999999999999889999999999999876543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=4.3e-15  Score=110.61  Aligned_cols=114  Identities=26%  Similarity=0.453  Sum_probs=91.1

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh-
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS-  172 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  172 (245)
                      ++.++..++++.++++.|.+.+.+.+||+|++|+++|+++..|+......                        ..... 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~------------------------~~~~~~   57 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI------------------------KRIQEG   57 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh------------------------HHHHHc
Confidence            46789999999999999998899999999988999999999999852100                        00000 


Q ss_pred             --hccCCcccccccCCceEe------cCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHHHH
Q 025984          173 --KTNGKMVGDLMTPAPVVV------RETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVR  231 (245)
Q Consensus       173 --~~~~~~v~~~m~~~~~~v------~~~~~l~~~~~~~~~~~~~~l~Vvd~~-g~~vGiIt~~dll~  231 (245)
                        .....++.++|.+++..+      .+++++.++++.|.+++.+++||+|++ |+++|+||.+|+++
T Consensus        58 ~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          58 GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence              012456888997655443      368999999999999999999999986 79999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.62  E-value=9.1e-15  Score=105.23  Aligned_cols=104  Identities=39%  Similarity=0.655  Sum_probs=92.8

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++++++.+.++.++.+.|.+.+...+||+|+ |+++|+++..|+....                                
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~--------------------------------   49 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD--------------------------------   49 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC--------------------------------
Confidence            5788999999999999998888888999997 8999999999997520                                


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                       ...++.++|...+.++.+++++.++++.|.+.+...+||++++|+++|+|+..|+++
T Consensus        50 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          50 -PDETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             -ccccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence             134688888888899999999999999999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.62  E-value=8e-15  Score=106.57  Aligned_cols=111  Identities=34%  Similarity=0.551  Sum_probs=93.7

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+.+++++.++.+.|.+++.+.+||+++ |+++|+|+..|+.......+.                          .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~   54 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL--------------------------D   54 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC--------------------------C
Confidence            5778999999999999999888889999997 999999999999743210000                          0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|.+++.++.+++++.++++.|.+.+..++||++++|+++|+||.+|++.
T Consensus        55 ~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          55 PESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             cCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            0125788889888999999999999999999999999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=9.3e-15  Score=108.91  Aligned_cols=124  Identities=26%  Similarity=0.377  Sum_probs=95.5

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+.+++++.++.+.|.+.+.+.+||+|++|+++|+++..|+..+......       ..       .+.........
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~-------~~-------~~~~~~~~~~~   67 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRD-------KA-------RTGDRSGEKER   67 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhh-------hc-------chhhhhhhhhh
Confidence            57789999999999999999999999999998999999999999864211000       00       00000000011


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD--ADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd--~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|..+++++.+++++.++++.|.+.+...+||++  ++|+++|+||++|+++
T Consensus        68 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          68 MLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             hccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            224568889988899999999999999999999999999985  3689999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.62  E-value=9.1e-15  Score=105.12  Aligned_cols=100  Identities=33%  Similarity=0.399  Sum_probs=89.4

Q ss_pred             eEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhcc
Q 025984           96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN  175 (245)
Q Consensus        96 ~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (245)
                      .++++++++.++.+.|.+.+...+||+|+ |+++|+++..|+....                                  
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~----------------------------------   48 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT----------------------------------   48 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc----------------------------------
Confidence            56799999999999999999999999998 9999999999998531                                  


Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ..++.++|...+.++.+++++.++++.|.+++...+||++ +|+++|+||.+|+++
T Consensus        49 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          49 YGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             ccchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            2346677888889999999999999999999999999998 689999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.62  E-value=1.2e-14  Score=104.20  Aligned_cols=103  Identities=36%  Similarity=0.596  Sum_probs=91.6

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+++++++.++.+.|.+++...+||+| +|+++|+++..|+..+.                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~--------------------------------   48 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH--------------------------------   48 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhccc--------------------------------
Confidence            467899999999999999988888999998 58999999999998631                                


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                       ...++.++|.+++.++++++++.++++.|.+.+...+||+|+ |+++|+||..|++.
T Consensus        49 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          49 -PNRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             -ccCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence             134577888888999999999999999999999999999996 99999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.61  E-value=1.3e-14  Score=105.04  Aligned_cols=109  Identities=39%  Similarity=0.656  Sum_probs=93.4

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+.+++++.++.+.|.+.+...+||+|+ |+++|+++..|+...... +                           .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~-~---------------------------~   52 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAE-G---------------------------R   52 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhc-C---------------------------c
Confidence            5788999999999999999888899999998 999999999999864210 0                           0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|..++.++.+++++.++++.|.+.+.+++||++++|+++|+||..|+++
T Consensus        53 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          53 EATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             ccccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            0012567778888999999999999999999999999999997799999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.4e-14  Score=105.74  Aligned_cols=110  Identities=25%  Similarity=0.489  Sum_probs=90.9

Q ss_pred             ceeEECCCCCHHHHHHHHHhcC-CceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~-~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      ++.++++++++.++.+.|.+++ ...++|+| +|+++|+++..|+..+.....                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~---------------------------   53 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK---------------------------   53 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC---------------------------
Confidence            4678899999999999998877 66777777 589999999999986421000                           


Q ss_pred             hccCCcccccccCCceEecCC--CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          173 KTNGKMVGDLMTPAPVVVRET--TNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       173 ~~~~~~v~~~m~~~~~~v~~~--~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      .....++.++|..+++++.++  +++.+++++|.+.+...+||+|++|+++|+||++|+++
T Consensus        54 ~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          54 DLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             CccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            001356788888888889887  78999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.61  E-value=1.6e-14  Score=106.14  Aligned_cols=120  Identities=39%  Similarity=0.612  Sum_probs=96.1

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++++++++.++.+.|.+.++..+||+|+ |+++|+++..|+..+.......     .     ..|    +..   ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~-----~-----~~~----~~~---~~   63 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATT-----L-----DIW----ELY---YL   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhccccc-----c-----cch----hhh---hh
Confidence            4678999999999999999999999999998 8999999999998753210000     0     000    000   00


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|.+++.++.+++++.+++..|.+.+.+.+||++++|+++|+||..|+++
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          64 LSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             hcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            1245678889888999999999999999999999999999998799999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.8e-14  Score=104.74  Aligned_cols=111  Identities=39%  Similarity=0.680  Sum_probs=93.2

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++.+++++.++.+.|.+++++.+||+|+ |+++|+++..|++......+.                          .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~--------------------------~   54 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR--------------------------D   54 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC--------------------------C
Confidence            5788999999999999999999999999998 999999999998632110000                          0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+||..|+++
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          55 PDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             cccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            0123488889888999999999999999999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.60  E-value=2.1e-14  Score=104.08  Aligned_cols=109  Identities=34%  Similarity=0.554  Sum_probs=93.3

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.+++.+.++.++.+.|.+.+++.+||+|+ |+++|+++..|+.......+                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~---------------------------~   53 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEG---------------------------L   53 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccC---------------------------C
Confidence            4778999999999999999888899999997 89999999999986321100                           0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|..+++++.+++++.++++.|.+.+..++||+++ |+++|+||.+|+++
T Consensus        54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          54 DPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             CccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            1135688888888999999999999999999999999999996 99999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.60  E-value=7.5e-15  Score=132.59  Aligned_cols=119  Identities=25%  Similarity=0.368  Sum_probs=102.1

Q ss_pred             eecccccCC-CceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (245)
Q Consensus        84 ~v~~im~~~-~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (245)
                      .|+++|... .+.+++++++++.++++.|.++++..+||+|+   +|+++|+||..|++...                  
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~------------------  156 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR------------------  156 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc------------------
Confidence            567777521 14579999999999999999999999999997   58999999999997420                  


Q ss_pred             cccchhHHHHHHhhccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          160 TWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                                   ...+.++.++|++  +++++.+++++.+|+++|.+++++.+||+|++|+++|+||++|+++..
T Consensus       157 -------------~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        157 -------------MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             -------------cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence                         1135789999986  678899999999999999999999999999889999999999999864

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.6e-14  Score=106.53  Aligned_cols=121  Identities=31%  Similarity=0.457  Sum_probs=95.6

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++++++++.++.+.|.+.+++.+||+|+ |+++|+++..++.++......            ..+....+.     .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~------------~~~~~~~~~-----~   63 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLG------------TAGETEKDL-----A   63 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhc------------cccchHHHH-----H
Confidence            4788999999999999999999999999997 899999999999864310000            000000000     0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      ....++.++|..+++++.+++++.++++.|.+.+...+||++++|+++|++++.|++++
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~  122 (122)
T cd04637          64 TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY  122 (122)
T ss_pred             HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence            11346788888889999999999999999999999999999988999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.60  E-value=4e-15  Score=131.57  Aligned_cols=127  Identities=24%  Similarity=0.395  Sum_probs=113.8

Q ss_pred             CCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        78 ~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      ..+..+.++++++.  +.++|++.+++.+|.+.|...+.+.+.++++++...||||.+|+..+.-..+.           
T Consensus       144 ~e~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-----------  210 (610)
T COG2905         144 SEFILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-----------  210 (610)
T ss_pred             chHHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-----------
Confidence            35566789999998  89999999999999999999999999999999999999999999986433232           


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                                      ....+|+++|+.++++|+.++.+.+|+-+|.+++++++||++ +|+++|+||.+||++...
T Consensus       211 ----------------~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         211 ----------------SKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             ----------------CcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence                            246899999999999999999999999999999999999998 799999999999998765

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.60  E-value=2.3e-14  Score=103.93  Aligned_cols=110  Identities=22%  Similarity=0.329  Sum_probs=93.7

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      +++.+++++++.++.+.|.+.+...++|+|+ |++.|+++..|+........                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~---------------------------~   53 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG---------------------------L   53 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC---------------------------C
Confidence            4678899999999999999888889999998 89999999999986531000                           0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      ....++.++|..++..+.+++++.++++.|.+.+...+||+++ |+++|+||..|++++
T Consensus        54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~~  111 (111)
T cd04589          54 PSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLSF  111 (111)
T ss_pred             CCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhcC
Confidence            1245788889888999999999999999999999999999984 899999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.60  E-value=2.9e-14  Score=128.99  Aligned_cols=113  Identities=26%  Similarity=0.394  Sum_probs=101.1

Q ss_pred             ccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchh
Q 025984           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN  165 (245)
Q Consensus        89 m~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (245)
                      |.+  +++++++++++.++.+.|.++++..+||+|+   +|+++|+|+.+|+....                        
T Consensus       106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------------------------  159 (505)
T PLN02274        106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------------------------  159 (505)
T ss_pred             ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------------------------
Confidence            555  7999999999999999999999999999997   48999999999997531                        


Q ss_pred             HHHHHHhhccCCcccccccCC--ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          166 EVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       166 ~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                              ..+.++.++|++.  ++++.+++++.+++++|.+.+.+.+||+|++++++|+||++|+++.+..
T Consensus       160 --------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        160 --------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             --------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                    1257899999876  7799999999999999999999999999988999999999999998764

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.59  E-value=2.6e-14  Score=127.71  Aligned_cols=130  Identities=25%  Similarity=0.308  Sum_probs=110.7

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEc-CCCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd-~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      .+.+.+|+++|+|+.++..++.+.++.++.+.+.+++++++||++ +.+.++|+++.+|++......+            
T Consensus       202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~------------  269 (429)
T COG1253         202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ------------  269 (429)
T ss_pred             ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc------------
Confidence            678899999999999999999999999999999999999999999 4588999999999998632110            


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                       ........+. ++++|++++++.++++.|++.+.+...|+|++|.+.|+||.+|+++++....
T Consensus       270 -----------------~~~~~~~~~~-~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei  331 (429)
T COG1253         270 -----------------SDLDLRVLVR-PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEI  331 (429)
T ss_pred             -----------------cccchhhccc-CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCC
Confidence                             0011111222 6899999999999999999999999999999999999999999999998754


Q ss_pred             H
Q 025984          238 H  238 (245)
Q Consensus       238 ~  238 (245)
                      .
T Consensus       332 ~  332 (429)
T COG1253         332 P  332 (429)
T ss_pred             c
Confidence            3

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=3.2e-14  Score=103.29  Aligned_cols=110  Identities=28%  Similarity=0.520  Sum_probs=91.2

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++.+++++.++.+.|.+++...++|.+ +|+++|+++..|+.......+.                          .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~--------------------------~   54 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA--------------------------G   54 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC--------------------------c
Confidence            578899999999999999887877777666 4899999999999865311000                          0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|...+.++.+++++.+++++|.+.+...+||++ +|+++|+||.+|+++
T Consensus        55 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          55 VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            113568888988889999999999999999999999999998 589999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.58  E-value=2.9e-14  Score=102.94  Aligned_cols=109  Identities=30%  Similarity=0.416  Sum_probs=90.6

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++.+++++.++.+.|.+++++.+||+|+ |+++|+++..|+.+......                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~---------------------------~   53 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK---------------------------A   53 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc---------------------------c
Confidence            5778999999999999999999999999998 89999999999987531100                           0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      ....++.++|.+++.++.+++++.+++++|.+ . ..+||++++|+++|+||.+|++++
T Consensus        54 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          54 KFSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY  110 (110)
T ss_pred             ccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence            01356778888888999999999999999988 3 347888888999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=2.4e-14  Score=105.39  Aligned_cols=120  Identities=32%  Similarity=0.494  Sum_probs=95.4

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++.+++++.++.+.|.+.+...+||+|+ |+++|+++..++..+......             .|..    ......
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-------------~~~~----~~~~~~   63 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRP-------------LVRD----RHQERR   63 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhh-------------cccc----hhhhhh
Confidence            5778999999999999999889999999997 999999999999865321000             0000    000001


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      ....++.++|..++.++.+++++.+++.+|.+.+.+++||+|+ |+++|+||.+|++++
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY  121 (121)
T ss_pred             hhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence            1245778888888999999999999999999999999999997 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.58  E-value=1.6e-14  Score=121.44  Aligned_cols=114  Identities=32%  Similarity=0.403  Sum_probs=100.4

Q ss_pred             cceecccccCCCc-eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        82 ~~~v~~im~~~~~-~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      .++|+++|.+  + ++++++++++.++.+.|.+.++..+||+|++|+++|+|+..|+..+... +               
T Consensus       154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-~---------------  215 (268)
T TIGR00393       154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-G---------------  215 (268)
T ss_pred             hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-C---------------
Confidence            4699999988  6 8999999999999999998899999999988999999999999865210 0               


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEE
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT  225 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt  225 (245)
                                  .....++.++|.++++++.+++++.+++++|.+.+...+||+|++|+++|+|+
T Consensus       216 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       216 ------------GSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ------------CcccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                        11246789999998999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.56  E-value=5.2e-14  Score=103.50  Aligned_cols=119  Identities=35%  Similarity=0.530  Sum_probs=95.2

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++++++++.++.+.|.+.++..+||+|++|+++|+++..|+............                 .+. ...
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----------------~~~-~~~   63 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----------------EHE-LYL   63 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----------------hhh-hhh
Confidence            47789999999999999999999999999988999999999999764210000000                 000 001


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|...+.++.+++++.++++.|.+.+..++||+++ |+++|++|.+|+++
T Consensus        64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            2345688888888999999999999999999999999999986 99999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.56  E-value=4.4e-14  Score=102.00  Aligned_cols=100  Identities=33%  Similarity=0.537  Sum_probs=89.3

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHH
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (245)
                      +...+.+++++.++.+.+.+.+...+||+|+   +|+++|+|+.+|+.....                            
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~----------------------------   54 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK----------------------------   54 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH----------------------------
Confidence            5788999999999999999988889999998   689999999999986420                            


Q ss_pred             HhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       171 ~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                           .     +|.+++.++++++++.++++.|.+.+.+++||++ +|+++|+||++|++++
T Consensus        55 -----~-----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          55 -----N-----YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA  105 (105)
T ss_pred             -----H-----hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence                 1     6777889999999999999999999999999996 7899999999999763

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.4e-13  Score=98.89  Aligned_cols=111  Identities=48%  Similarity=0.747  Sum_probs=93.5

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.+++.++++.++.+.|.+.+...+||++++++++|+++..|+........                           .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~   54 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG---------------------------L   54 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc---------------------------C
Confidence            4678899999999999999988899999998899999999999987531000                           0


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      .....+.++|..++.++.+++++.+++..|.+.+..++||+|++|+++|+++..|+++
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          55 DPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             CccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            0011256678788899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.5e-13  Score=99.66  Aligned_cols=110  Identities=35%  Similarity=0.551  Sum_probs=92.2

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++++++++.++.+.|.+.+.+.+||+|++ +++|+++..|++......+                          ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~--------------------------~~   54 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRN--------------------------LK   54 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhcc--------------------------CC
Confidence            46788999999999999998899999999964 9999999999987421100                          00


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      ....++.++|.+++.++.+++++.++++.|.+.+.+.+||++++ +++|+|+.+|+++
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          55 PREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             cccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            12456788888888999999999999999999999999999964 9999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.5e-13  Score=98.92  Aligned_cols=104  Identities=39%  Similarity=0.646  Sum_probs=91.1

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++..++++.++.+.|.+.++..+||++++|+++|+++.+++....                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~--------------------------------   49 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP--------------------------------   49 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence            577889999999999999988889999999889999999999997521                                


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                       ...++.++|...+.++.+++++.+++..|.+.+.+.+||++ +|+++|+||..|+++
T Consensus        50 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          50 -EEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             -ccchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence             12356677887889999999999999999999999999998 479999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.54  E-value=7.5e-14  Score=125.99  Aligned_cols=123  Identities=25%  Similarity=0.339  Sum_probs=102.8

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      .+..++++++|.+  ++.++.+++++.++.+.|.++++..+||+|++|+++|+|+.+|+........             
T Consensus       331 ~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------  395 (454)
T TIGR01137       331 VLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK-------------  395 (454)
T ss_pred             HhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC-------------
Confidence            3677899999988  8999999999999999999999999999998899999999999987431100             


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                                    .....++.++|.+++.++++++++.+++++|.+.+   .+||+++|+++|+||++|+++++
T Consensus       396 --------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       396 --------------ANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             --------------CCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence                          01235788999888899999999999999998764   34454478999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.52  E-value=6.8e-14  Score=118.41  Aligned_cols=132  Identities=22%  Similarity=0.248  Sum_probs=111.9

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      .++.++|.|+|.|+.++..++.+++.+++.+.+..+.|.++|++.++ ++++|+++.+|+++++...+.           
T Consensus       196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-----------  264 (423)
T COG4536         196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-----------  264 (423)
T ss_pred             ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-----------
Confidence            67899999999999999999999999999999999999999999765 679999999999987531110           


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                      .....+..+.. .|.+|+..+++.+-+..|++++.+...||||+|.+.|+||.+|+++++....
T Consensus       265 ----------------~~k~d~~~~a~-epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdf  327 (423)
T COG4536         265 ----------------FTKEDILRAAD-EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDF  327 (423)
T ss_pred             ----------------ccHhHHHHHhc-CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccc
Confidence                            01122222223 4899999999999999999999999999999999999999999999998665


Q ss_pred             H
Q 025984          238 H  238 (245)
Q Consensus       238 ~  238 (245)
                      .
T Consensus       328 t  328 (423)
T COG4536         328 T  328 (423)
T ss_pred             c
Confidence            4

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.52  E-value=2e-13  Score=100.20  Aligned_cols=113  Identities=29%  Similarity=0.438  Sum_probs=91.7

Q ss_pred             ceeEECCCCCHHHHHHHHHhcC-CceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~-~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      +++++++++++.++.+.|...+ ++.+||+|+ |+++|+|+..|+..+....                |.        ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~----------------~~--------~~   56 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTP----------------YG--------RA   56 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhch----------------hh--------HH
Confidence            4678899999999999998876 889999999 9999999999998642100                00        00


Q ss_pred             hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCC---EEEEEcCCCcEEEEEEhHHHHH
Q 025984          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR---RLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~---~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      .....++.++|..++.++.+++++.+++..|.+.+..   ..+|++++|+++|+||..|+++
T Consensus        57 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          57 LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            1134678899998899999999999999999988864   3468887899999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2.2e-13  Score=103.83  Aligned_cols=133  Identities=32%  Similarity=0.529  Sum_probs=97.8

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccC--CCCCCC----CCCccc--cccccchh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG--SGRADN----SMFPEV--DSTWKTFN  165 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~--~~~~~~----~~~~~~--~~~~~~~~  165 (245)
                      ++.++++++++.++.+.|.+.++..+||+|+ |+++|+++..|+.++.....  .....+    .+...+  ...|..  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE--   78 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH--
Confidence            5788999999999999999999999999998 89999999999987542111  000000    000000  011211  


Q ss_pred             HHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       166 ~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                       ...........++.++|...+.++.+++++.+++..|.+.+..++||+++ |+++|+|+.+|+++
T Consensus        79 -~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          79 -TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             -HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence             11111222356788889888999999999999999999999999999996 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.49  E-value=3.1e-13  Score=124.60  Aligned_cols=151  Identities=28%  Similarity=0.388  Sum_probs=111.7

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCC--------------
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG--------------  147 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~--------------  147 (245)
                      ..+|+++|.+  ++.++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+.++.......              
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~  144 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII  144 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence            3589999998  899999999999999999999999999999999999999999998753211100              


Q ss_pred             -------------CC--CCCC----------Cccc--------cccccc--------------------hhHHHHHH---
Q 025984          148 -------------RA--DNSM----------FPEV--------DSTWKT--------------------FNEVQKLL---  171 (245)
Q Consensus       148 -------------~~--~~~~----------~~~~--------~~~~~~--------------------~~~~~~~~---  171 (245)
                                   ..  ...+          ...+        ...++.                    -.++.+.+   
T Consensus       145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~  224 (546)
T PRK14869        145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKEN  224 (546)
T ss_pred             HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhC
Confidence                         00  0000          0000        000000                    00011111   


Q ss_pred             ----------------hhccCCccccccc-CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          172 ----------------SKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       172 ----------------~~~~~~~v~~~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                                      ......++.++|+ +++.++++++++.++.+.|.+.+.+++||+|++|+++|+||.+|+++...
T Consensus       225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~  304 (546)
T PRK14869        225 GVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR  304 (546)
T ss_pred             CCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence                            1123568999999 88999999999999999999999999999999999999999999998644

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.48  E-value=1e-12  Score=95.84  Aligned_cols=108  Identities=44%  Similarity=0.675  Sum_probs=93.6

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++.++.++.++...|.++++..+||++.. +++|+++.+|+..+......                           
T Consensus         8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~-~l~Giit~~di~~~~~~~~~---------------------------   59 (117)
T COG0517           8 DVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDILRALAAGGK---------------------------   59 (117)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC-EEEEEEEHHHHHHHHhccCC---------------------------
Confidence            78999999999999999999999999999853 79999999999986421110                           


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHH-cCCCEEEEEcCCC-cEEEEEEhHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLE-TKYRRLPVVDADG-KLVGIITRGNVV  230 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~-~~~~~l~Vvd~~g-~~vGiIt~~dll  230 (245)
                       ...++.++|..++.++.++.++.++.+.|.+ .+.+.+||+++++ +++|++|..|++
T Consensus        60 -~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          60 -RLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             -ccccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence             1115888999889999999999999999999 6999999999875 999999999973

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.47  E-value=4.3e-13  Score=118.98  Aligned_cols=125  Identities=34%  Similarity=0.449  Sum_probs=113.0

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhc-----CCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  154 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~-----~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~  154 (245)
                      ...-+++.+|+.  +++.++++.|+.+++..+++.     ...+++|+|+++++.|+++.++++...             
T Consensus       129 y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~-------------  193 (451)
T COG2239         129 YPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE-------------  193 (451)
T ss_pred             CChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC-------------
Confidence            345589999999  999999999999999999853     467899999999999999999998542             


Q ss_pred             ccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                                          .+..+.++|.+.+.+|.+++..+++.++|.+++.-.+||||++|+++|+||..|++..+.
T Consensus       194 --------------------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~  253 (451)
T COG2239         194 --------------------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIE  253 (451)
T ss_pred             --------------------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHH
Confidence                                367899999999999999999999999999999999999999999999999999999988


Q ss_pred             HhHHH
Q 025984          235 QIKHA  239 (245)
Q Consensus       235 ~~~~~  239 (245)
                      +...+
T Consensus       254 eEa~e  258 (451)
T COG2239         254 EEATE  258 (451)
T ss_pred             HHHHH
Confidence            76654

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.6e-13  Score=122.56  Aligned_cols=170  Identities=24%  Similarity=0.303  Sum_probs=128.8

Q ss_pred             cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-----CcEE
Q 025984           55 RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLV  129 (245)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-----g~~~  129 (245)
                      .+...++.|++.++.       +..+.+++++++|.+  ++++++.-..+..+.+.++.+.|+.|||+|+.     +++.
T Consensus       561 ~~i~LkgvP~Le~~p-------e~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~  631 (762)
T KOG0474|consen  561 IIIQLKGVPFLEWEP-------EPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLH  631 (762)
T ss_pred             HhhhccCCccccCCC-------chHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhh
Confidence            566678889999884       778899999999999  89999999999999999999999999999962     5789


Q ss_pred             EEEehhhhhhhhcc---cCCCCCCCCCCcccccccc-------chhHHHHHH-hhccCCcccccccCCceEecCCCCHHH
Q 025984          130 GLVSDYDLLALDSI---SGSGRADNSMFPEVDSTWK-------TFNEVQKLL-SKTNGKMVGDLMTPAPVVVRETTNLED  198 (245)
Q Consensus       130 Giv~~~dl~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~v~~~m~~~~~~v~~~~~l~~  198 (245)
                      |+|-+..+...++.   ...++....+...-...|+       .+.+++-.. +...-.++..+|.++|++|.+++++..
T Consensus       632 GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k  711 (762)
T KOG0474|consen  632 GLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAK  711 (762)
T ss_pred             HHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHH
Confidence            99999998875432   1111111111111111111       122221111 112345788899999999999999999


Q ss_pred             HHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          199 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       199 ~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                      +..+|++.|++|+.||++.+.++|++|++|+.++=
T Consensus       712 ~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  712 AFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR  746 (762)
T ss_pred             HHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence            99999999999999999888899999999998664

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.38  E-value=5.3e-12  Score=95.17  Aligned_cols=108  Identities=25%  Similarity=0.278  Sum_probs=79.4

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|++++........  .....   ..|           .
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~--~~~~~---~~~-----------~   65 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTR--VQPED---ETK-----------Q   65 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccc--cccch---hhc-----------c
Confidence            5789999999999999999999999999999999999999999987642111000  00000   000           0


Q ss_pred             ccCCccccc---------ccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 025984          174 TNGKMVGDL---------MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD  217 (245)
Q Consensus       174 ~~~~~v~~~---------m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~  217 (245)
                      .....+.++         |..+++++.+++++.+|+++|.+++.+++||+|++
T Consensus        66 ~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          66 TNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             cccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            001122333         34668899999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.37  E-value=1.2e-12  Score=104.39  Aligned_cols=129  Identities=22%  Similarity=0.369  Sum_probs=110.9

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      ....++|+|+|.|+.+..++..+.++.+++..+.++.+++|||+.++ +.+.|++..+||+..+...             
T Consensus        63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~-------------  129 (293)
T COG4535          63 DIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD-------------  129 (293)
T ss_pred             HHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC-------------
Confidence            44677999999999899999999999999999999999999999754 6799999999999864211             


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                      .....+.++.++ ..+|+++-.+...++-|+..+.+...|+|+.|.+.|+||.+|+++.+....
T Consensus       130 ----------------~~~F~i~~lLRP-av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdI  192 (293)
T COG4535         130 ----------------AEPFDIKELLRP-AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDI  192 (293)
T ss_pred             ----------------cccccHHHhccc-ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhccc
Confidence                            112455666555 788999999999999999999999999999999999999999999988544

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.28  E-value=1.5e-11  Score=78.51  Aligned_cols=56  Identities=50%  Similarity=0.869  Sum_probs=52.9

Q ss_pred             ccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       179 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      ++++|.++++++++++++.++++.|.+.+.+++||+|++|+++|+||.+||++++.
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            45789999999999999999999999999999999999999999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.10  E-value=1.8e-10  Score=73.46  Aligned_cols=54  Identities=46%  Similarity=0.722  Sum_probs=51.3

Q ss_pred             ecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus        85 v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      |+++|++  +++++++++++.++.+.|.+++++.+||+|++|+++|+++.+||+++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~   54 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKA   54 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhh
Confidence            5789998  89999999999999999999999999999999999999999999976

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.10  E-value=1.8e-09  Score=95.55  Aligned_cols=121  Identities=26%  Similarity=0.284  Sum_probs=97.9

Q ss_pred             ceecccccCCC-ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984           83 YTVGDFMTTKE-ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (245)
Q Consensus        83 ~~v~~im~~~~-~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (245)
                      .++.++|.+.. ..+...++.+..++++.|...+...++|+|+++++.|+|+.+++.....                   
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------------  334 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT-------------------  334 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh-------------------
Confidence            46677775410 1123446678999999999999999999999999999999999976421                   


Q ss_pred             cchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                   ....+.+.+.....++.+++++.+++..+.+.... +||||++|+++|+|+..++++.+...
T Consensus       335 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        335 -------------QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             -------------cCCchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence                         13356666777788999999999999999987765 99999999999999999999998653

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.09  E-value=2.3e-09  Score=93.71  Aligned_cols=109  Identities=28%  Similarity=0.405  Sum_probs=93.8

Q ss_pred             eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhc
Q 025984           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (245)
Q Consensus        95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (245)
                      .....++.+..++.+.|...+...+.|+|+++++.|+|+.+++..+..                                
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------------------  299 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK--------------------------------  299 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh--------------------------------
Confidence            345666778999999999999999999999999999999999876421                                


Q ss_pred             cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                      ....+.+.+.....++.+++++.+++..|.+.+.. +||+|++|+++|+||..++++++...
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       300 KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             cCCchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence            12356677777788999999999999999999988 99999999999999999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.05  E-value=1.8e-09  Score=94.78  Aligned_cols=125  Identities=27%  Similarity=0.388  Sum_probs=96.7

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ++..+..++++.+|++.|...+++.+||+|+.|+.+|.++..|+............          +|.-   +...   
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~----------~~~~---l~~~---  301 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNL----------DLSC---LSEA---  301 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCcc----------chhH---HHHH---
Confidence            58899999999999999999999999999999999999999999875321111000          0000   0000   


Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                         ......-....+++.+++++.+++..|...+.+++.|||++|.++|+||..|++.++....
T Consensus       302 ---~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p  362 (381)
T KOG1764|consen  302 ---LSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTP  362 (381)
T ss_pred             ---hhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCc
Confidence               0111111223689999999999999999999999999999999999999999999988654

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.04  E-value=7.4e-10  Score=94.95  Aligned_cols=107  Identities=36%  Similarity=0.574  Sum_probs=96.0

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHH
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (245)
                      ++..+.++.++.++++....+++..+||.++   .++++|+||.+|+.-.                              
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~------------------------------  166 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL------------------------------  166 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh------------------------------
Confidence            4678999999999999999999999999974   3679999999998743                              


Q ss_pred             HhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       171 ~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                        +.....+.++|++.+.+.+...+++++-+++.+.+...+||||++|+++.+|++.||.+.
T Consensus       167 --~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  167 --EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             --hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence              224678999999989999999999999999999999999999999999999999999875

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.71  E-value=4.6e-09  Score=94.64  Aligned_cols=165  Identities=11%  Similarity=0.118  Sum_probs=112.9

Q ss_pred             cccccccCCCCchhhhhhhhccC------Cccc-ccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSS------DRVS-ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  103 (245)
                      .++.++..+.+..++...+....      ..+. ...+..+...-....+.. .  ....+++++|++  ++.+++++++
T Consensus       139 ~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~-a--~~~~~v~~im~~--~~~~v~~~~~  213 (449)
T TIGR00400       139 IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL-A--KPEEILSSIMRS--SVFSIVGVND  213 (449)
T ss_pred             CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc-C--CCCCcHHHHhCC--CCeeECCCCC
Confidence            45667788889999998875311      1111 111111110000000000 0  134579999998  7899999999


Q ss_pred             HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccc
Q 025984          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLM  183 (245)
Q Consensus       104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m  183 (245)
                      +.++++.|.+++...+||+|++|+++|+|+.+|+.....                                 ....+++|
T Consensus       214 ~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~---------------------------------~~~~ed~~  260 (449)
T TIGR00400       214 QEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ---------------------------------SEATEDFY  260 (449)
T ss_pred             HHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH---------------------------------hhhHHHHH
Confidence            999999999999999999999999999999999997632                                 12225666


Q ss_pred             cCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984          184 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  238 (245)
Q Consensus       184 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~  238 (245)
                      .....+..+++.+.++...|.+++..+++|.    .+.|+++ ..++..+.+...
T Consensus       261 ~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~~~l~  310 (449)
T TIGR00400       261 MIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYEDLLL  310 (449)
T ss_pred             HhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHHHHHH
Confidence            6554444557788999999999999888885    4678888 777776655443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.68  E-value=6.2e-08  Score=70.10  Aligned_cols=101  Identities=16%  Similarity=0.161  Sum_probs=69.8

Q ss_pred             ccccCCCCchhhhhhhhccCC-ccc--cccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVS--ALRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      .++..+.++.++...+..... .++  ...+.+   ....+... ..  .......++.++|..  ++..+.+++++.++
T Consensus         4 ~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~-~~--~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a   78 (111)
T cd04603           4 VSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLE-IG--PNDYETLKVCEVYIV--PVPIVYCDSKVTDL   78 (111)
T ss_pred             EEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHh-hc--cccccccChhheeec--CCcEECCCCcHHHH
Confidence            345677788888888765433 222  222211   11111111 00  112223568899987  78999999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            99999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.65  E-value=2.9e-07  Score=83.16  Aligned_cols=162  Identities=19%  Similarity=0.231  Sum_probs=107.7

Q ss_pred             cccccccccccccccccccCCCCCCCCcceecccccCC---CceeEECCC-CCHHHHHHHHHhcCCceeEEEc--CCCcE
Q 025984           55 RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK---EELHVVKPT-TTVDEALEILVEKRITGFPVID--DDWKL  128 (245)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~~~v~~~-~~v~~~~~~~~~~~~~~~~Vvd--~~g~~  128 (245)
                      +.+..++.|+.+...         ...+.-..++|++.   ..+..++.+ +++.+...+|+++.+..+||+=  +..++
T Consensus       524 a~I~~ng~P~l~~k~---------e~~~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~l  594 (696)
T KOG0475|consen  524 AHIELNGYPFLDSKS---------EFSSTLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRL  594 (696)
T ss_pred             HHHHhcCCCCccccc---------ccccchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcccccee
Confidence            455566677775442         22233333445432   236667766 8999999999999999898883  34679


Q ss_pred             EEEEehhhhhhhhcccC----CCCCCCCCCccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHH
Q 025984          129 VGLVSDYDLLALDSISG----SGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL  204 (245)
Q Consensus       129 ~Giv~~~dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~  204 (245)
                      +|+|.++|+........    ........+.+......        ........+.++|+..|.+|...+|.+.++.+|+
T Consensus       595 vGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~--------~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~  666 (696)
T KOG0475|consen  595 VGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV--------AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFR  666 (696)
T ss_pred             EEEEchHHHHHHHhhhccccccceecccccCCCCcccc--------CCCCCCcCceeeccCCcccccccCcHHHHHHHHH
Confidence            99999999876432111    10001111111000000        0011234678899999999999999999999999


Q ss_pred             HcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          205 ETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       205 ~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      +.+++.+.|.. +|++.|+||++|+++...
T Consensus       667 ~lg~~~~~v~~-~G~l~Giitkkd~l~~~r  695 (696)
T KOG0475|consen  667 KLGLRQILVTK-NGILLGIITKKDCLRHTR  695 (696)
T ss_pred             hhCceEEEEcc-CCeeEeeeehHHHHHhhc
Confidence            99999887755 899999999999998753

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.57  E-value=1.9e-07  Score=67.87  Aligned_cols=103  Identities=13%  Similarity=0.180  Sum_probs=71.0

Q ss_pred             cccCCCCchhhhhhhhccCC-ccc--cccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHH
Q 025984           35 CLLLSRPGCRVFSVLATSSD-RVS--ALRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL  108 (245)
Q Consensus        35 ~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~  108 (245)
                      ++..+.++.++...+.++.. .++  ...+..   ....+...............++.++|..  ++.++.+++++.+++
T Consensus         5 ~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~   82 (114)
T cd04619           5 KIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLLHDVW   82 (114)
T ss_pred             EECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCHHHHH
Confidence            45677888888888876554 222  222211   1111111000000112234578899987  789999999999999


Q ss_pred             HHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       109 ~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      +.|.+++...+||+|++|+++|+|+.+|+.+
T Consensus        83 ~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          83 QVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            9999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.51  E-value=2.5e-07  Score=67.49  Aligned_cols=55  Identities=29%  Similarity=0.482  Sum_probs=51.3

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      .+++++|..  ++..+++++++.++++.|.+.+...+||+|++|+++|+|+..|+..
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            689999988  7899999999999999999999999999999899999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.51  E-value=3.4e-08  Score=91.29  Aligned_cols=142  Identities=20%  Similarity=0.330  Sum_probs=96.6

Q ss_pred             Ccceeccccc-CCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984           81 GVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (245)
Q Consensus        81 ~~~~v~~im~-~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (245)
                      ...+|+++|+ .  ++.++++++++.++.+.|.+++++.+||+|++|+++|+|+.+|+......      ...+.... +
T Consensus       244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~------~~iLVD~~-e  314 (546)
T PRK14869        244 QSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRK------KVILVDHN-E  314 (546)
T ss_pred             cCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccC------ceEEEcCc-c
Confidence            5678999999 6  79999999999999999999999999999999999999999999974221      00000000 0


Q ss_pred             cccchhHHHH--HHhhccCCcccccccCCceEe---cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          160 TWKTFNEVQK--LLSKTNGKMVGDLMTPAPVVV---RETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       160 ~~~~~~~~~~--~~~~~~~~~v~~~m~~~~~~v---~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      .-..+....+  ...-..+.++++++...|..+   +..++...+.++|.+.++...|++. ...+.||++-++.++.
T Consensus       315 ~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~  391 (546)
T PRK14869        315 KSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS  391 (546)
T ss_pred             ccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence            0000000000  000112345667777766554   4466778899999999988777776 3467888877776643

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.48  E-value=2.8e-07  Score=74.93  Aligned_cols=60  Identities=37%  Similarity=0.544  Sum_probs=56.4

Q ss_pred             cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      ...++.++|.++++++.+++++.++..+|.+.+++..||+|+ ++++|++|.+|+.+++++
T Consensus       170 Pk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~  229 (294)
T COG2524         170 PKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIAN  229 (294)
T ss_pred             CcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHc
Confidence            467899999999999999999999999999999999999994 599999999999999886

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=4.8e-07  Score=64.19  Aligned_cols=94  Identities=19%  Similarity=0.281  Sum_probs=66.8

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI  110 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~  110 (245)
                      ++..+..+.++.+++..+.+... .++...      .+.       ....+-++..|+.... .+.++.+++++.++++.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd------~~~-------~~~~Givt~~Dl~~~~-~~~~v~~~~~l~~a~~~   67 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWD------SRK-------QQFVGMLTITDFILIL-RLVSIHPERSLFDAALL   67 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEe------CCC-------CEEEEEEEHHHHhhhe-eeEEeCCCCcHHHHHHH
Confidence            34567788899999988765553 333221      100       0111233555554431 16789999999999999


Q ss_pred             HHhcCCceeEEEcCC-CcEEEEEehhhhhh
Q 025984          111 LVEKRITGFPVIDDD-WKLVGLVSDYDLLA  139 (245)
Q Consensus       111 ~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~  139 (245)
                      |.+++.+.+||+|++ |+++|+|+.+|++.
T Consensus        68 m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          68 LLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.48  E-value=3.6e-07  Score=66.63  Aligned_cols=55  Identities=38%  Similarity=0.556  Sum_probs=51.0

Q ss_pred             CcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       177 ~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                      .++.++|.+.+.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+||.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            5688999888999999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.47  E-value=5.8e-07  Score=64.46  Aligned_cols=103  Identities=20%  Similarity=0.245  Sum_probs=71.3

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc-ccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR-SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALE  109 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~  109 (245)
                      .+.++..+.+..++...+..+.. .++...+ ......-....+.   ......++.++|..  ++.++++++++.++.+
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~---~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~   77 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA---GKDPDTTIEKVMTK--NPITVNPKTSVASVAH   77 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHh---cccccccHHHHhcC--CCeEECCCCCHHHHHH
Confidence            34566778888888888765543 2222211 1111100000000   01134578899987  7899999999999999


Q ss_pred             HHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          110 ILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       110 ~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      .|.+++...+||++++|+++|+++..|+.+
T Consensus        78 ~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          78 MMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            999999999999998899999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.47  E-value=2.7e-07  Score=76.46  Aligned_cols=62  Identities=29%  Similarity=0.522  Sum_probs=57.3

Q ss_pred             HhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       171 ~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      .....+....++|.++++++.+++++.++.+++.+++++.+||+|++.+++|+||.+|+++.
T Consensus       239 ~R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~  300 (382)
T COG3448         239 RRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH  300 (382)
T ss_pred             HHHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence            34456778899999999999999999999999999999999999999999999999999983

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.46  E-value=1.2e-06  Score=79.82  Aligned_cols=162  Identities=23%  Similarity=0.300  Sum_probs=101.0

Q ss_pred             cccccccCCCCchhhhhhhhccCC-ccccccc-cc----ccccccccccCCCCCCCCcceeccccc-CCCceeEECCCCC
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRR-SS----AVFASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPTTT  103 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~  103 (245)
                      .+..++..+.++.++...+.++.. .++...+ ..    +...+...     . .....++.++|. .  ++++++++++
T Consensus        95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~-----~-~~~~~~V~dim~~~--~~v~v~~~~s  166 (486)
T PRK05567         95 TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF-----E-TDLSQPVSEVMTKE--RLVTVPEGTT  166 (486)
T ss_pred             CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh-----c-ccCCCcHHHHcCCC--CCEEECCCCC
Confidence            445667778888888888766553 3332221 11    11111100     0 112357889997 4  6899999999


Q ss_pred             HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccc
Q 025984          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLM  183 (245)
Q Consensus       104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m  183 (245)
                      +.++++.|.+++.+.+||+|++|+++|+|+.+|+++.......       ..                .......+...|
T Consensus       167 l~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a-------~~----------------d~~g~l~V~aai  223 (486)
T PRK05567        167 LEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNA-------CK----------------DEQGRLRVGAAV  223 (486)
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCc-------cc----------------ccCCCEEEEeec
Confidence            9999999999999999999999999999999999975311000       00                000122334444


Q ss_pred             cCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHHHH
Q 025984          184 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVR  231 (245)
Q Consensus       184 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~vGiIt~~dll~  231 (245)
                      ..+     + . -.+....|.+.+.+.+ |+|. +|+..|+++.-+.++
T Consensus       224 ~~~-----~-~-~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~  264 (486)
T PRK05567        224 GVG-----A-D-NEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIK  264 (486)
T ss_pred             ccC-----c-c-hHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHH
Confidence            432     2 1 2677777888999855 5554 576666555444443

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.45  E-value=4.5e-07  Score=68.53  Aligned_cols=61  Identities=28%  Similarity=0.427  Sum_probs=56.0

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                      ......+|+.+.+.+.+++++.++.++|++.|++.+||+++ |+++|-||.+++.+.+.+..
T Consensus        64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~  124 (187)
T COG3620          64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM  124 (187)
T ss_pred             eEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc
Confidence            44667899999999999999999999999999999999995 89999999999999987664

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.42  E-value=1.1e-06  Score=63.41  Aligned_cols=106  Identities=22%  Similarity=0.214  Sum_probs=72.2

Q ss_pred             cccccccCCCCchhhhhhhhccCC-cccc--ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSA--LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      .+++.+..+.++.++...+..... .++.  ..+.+   +...+...... ........++.++|.+  +...+.+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~~   78 (114)
T cd04604           2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTR--NPKTIDPDALA   78 (114)
T ss_pred             CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhcc--CCeEECCCCcH
Confidence            346667778888888877754432 2222  22221   11111111000 0112233479999988  78899999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      .++++.|.+++...+||++++|+++|+|+..|+++
T Consensus        79 ~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          79 AEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            99999999999999999998899999999999874

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=7.6e-07  Score=64.48  Aligned_cols=103  Identities=16%  Similarity=0.219  Sum_probs=68.4

Q ss_pred             ccccCCCCchhhhhhhhccC-C-cccc-ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCC--CCHH
Q 025984           34 PCLLLSRPGCRVFSVLATSS-D-RVSA-LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPT--TTVD  105 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~-~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~--~~v~  105 (245)
                      .++..+.++.++...+.... . .++. ..+..   +...+...... ........++.++|..  +++++.++  +++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~~~l~   80 (115)
T cd04620           4 LTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTA-IGKDLSDLPIGEVMTQ--PVVTLQESEIQDIF   80 (115)
T ss_pred             eEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHh-cCCCccccCHHHhcCC--CcEEEecccccCHH
Confidence            45567777888888775544 2 2222 22111   11111110000 0111224578899987  78888887  7899


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus        81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=7.3e-07  Score=64.59  Aligned_cols=104  Identities=15%  Similarity=0.196  Sum_probs=70.5

Q ss_pred             cccccCCCCchhhhhhhhccCC-ccccc-cc-cc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSAL-RR-SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      ++.+..+.++.++...+.++.. .++.. .+ ..    +...+....+..........++.++|..  +++++++++++.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~   80 (114)
T cd04630           3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMDIK   80 (114)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCCHH
Confidence            4556677778888888765553 33321 11 11    1111111100000112234678899987  799999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++++.|.+.+...+||+|+ |+++|+|+..|+.+
T Consensus        81 ~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          81 YCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            9999999999999999997 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=9.7e-07  Score=64.46  Aligned_cols=106  Identities=14%  Similarity=0.143  Sum_probs=69.6

Q ss_pred             cccccCCCCchhhhhhhhccCC-c--cccccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-R--VSALRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      ..++..+.++.++...+..+.. .  +....+..   +...+...... ........++.++|....+++++++++++.+
T Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   81 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI-GGADLQKVPVGVIMTRMPNITTTTPEESVLE   81 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH-cCCCccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence            3456677788888877754432 2  22222211   11111111000 1122345678888873225889999999999


Q ss_pred             HHHHHHhcCCceeEEEcCC---CcEEEEEehhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA  139 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~---g~~~Giv~~~dl~~  139 (245)
                      ++++|.+++++.+||+|++   |+++|+|+..|+.+
T Consensus        82 ~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          82 AAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            9999999999999999987   68999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.36  E-value=8.8e-07  Score=64.09  Aligned_cols=104  Identities=20%  Similarity=0.232  Sum_probs=69.4

Q ss_pred             cccccCCCCchhhhhhhhccC-C-cccc--ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSS-D-RVSA--LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~-~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      ++.+..+.++.++...+.... . .++.  ..+.+   +...+.... .  .......++.++|.+...++.+.+++++.
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~-~--~~~~~~~~v~~~~~~~~~~~~v~~~~~l~   79 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAI-P--TSQWAQTTVIQVMTPAAKLVTVLSEESLA   79 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHH-H--HhhccccchhhhhcccccceEECCCCcHH
Confidence            556677888888888764432 2 2222  22221   111111000 0  00112457888997532467899999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++++.|.+++.+.+||+|++|+++|+++.+|+.+
T Consensus        80 ~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          80 EVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            9999999999999999998889999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.35  E-value=1.2e-06  Score=63.10  Aligned_cols=104  Identities=22%  Similarity=0.299  Sum_probs=72.1

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      ++.+..+.++.++...+.++.. .++...  +..   +...+...... ........++.++|.+  ++.++.+++++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~   79 (114)
T cd04613           3 VVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILF-DPSLYDLVVASDIMTK--PPVVVYPEDSLED   79 (114)
T ss_pred             ceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHh-cccccccEEHHHhccC--CCcEEcCCCCHHH
Confidence            3456677888888888876543 233221  111   12222111000 0112233689999988  7999999999999


Q ss_pred             HHHHHHhcCCceeEEEcC-CCcEEEEEehhhhhh
Q 025984          107 ALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA  139 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~-~g~~~Giv~~~dl~~  139 (245)
                      +++.|.+.+.+.+||+++ +|+++|+++.+|+..
T Consensus        80 ~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          80 ALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            999999999999999997 789999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.35  E-value=2.5e-06  Score=60.18  Aligned_cols=92  Identities=26%  Similarity=0.398  Sum_probs=66.9

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEIL  111 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~  111 (245)
                      ++++..+.++.+++..+.+... .++...      ..        ....+-++..+++... .+.++.+++++.++++.|
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d------~~--------~~~~Giv~~~dl~~~~-~~~~v~~~~~l~~a~~~m   67 (96)
T cd04614           3 VPTVWEETPLPVAVRIMELANVKALPVLD------DD--------GKLSGIITERDLIAKS-EVVTATKRTTVSECAQKM   67 (96)
T ss_pred             ccEeCCCCcHHHHHHHHHHcCCCeEEEEC------CC--------CCEEEEEEHHHHhcCC-CcEEecCCCCHHHHHHHH
Confidence            4567778888888888765543 233221      10        1112334555655432 378899999999999999


Q ss_pred             HhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          112 VEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       112 ~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      .+++.+.+||++++|+++|+|+.+|+.+
T Consensus        68 ~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          68 KRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999999998889999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.33  E-value=1.3e-06  Score=64.06  Aligned_cols=56  Identities=38%  Similarity=0.639  Sum_probs=51.7

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ..++.++|..  ++.++++++++.++++.|.+.+.+.+||+|++|+++|+|+..|+.+
T Consensus        68 ~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          68 PETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             cccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            4478899987  7999999999999999999999999999998899999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.32  E-value=2e-06  Score=61.81  Aligned_cols=103  Identities=24%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             ccccCCCCchhhhhhhhccCC-cccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      .++..+.++.++...+..... .++...  +.+   ++..+...............+++++|.+  ++.++.+++++.++
T Consensus         4 ~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~   81 (113)
T cd04623           4 ITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTVDEA   81 (113)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcHHHH
Confidence            345667778888877765543 333221  211   1111111000100111224578999987  78999999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++.|.+.+.+.+||+++ |+++|+|+..|+.+
T Consensus        82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            99999999999999987 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.32  E-value=1.1e-05  Score=72.93  Aligned_cols=100  Identities=15%  Similarity=0.152  Sum_probs=73.1

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      ...++..+.++.++...+.++.. .++...+..    +...+.    ..   .....++.++|++  +++++++++++.+
T Consensus        97 ~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL----~~---~~~~~~V~dIMt~--~litv~~~~sL~e  167 (475)
T TIGR01303        97 TPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDL----LG---VDRFTQVRDIMST--DLVTAPADTEPRK  167 (475)
T ss_pred             CCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHh----hc---CCCCCCHHHHccC--CceEeCCCCcHHH
Confidence            34466778889999888876554 222111111    111111    00   0123579999998  8999999999999


Q ss_pred             HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      ++++|.++++..+||+|++|+++|+|+.+||.+.
T Consensus       168 Al~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~  201 (475)
T TIGR01303       168 AFDLLEHAPRDVAPLVDADGTLAGILTRTGALRA  201 (475)
T ss_pred             HHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence            9999999999999999988999999999999975

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.32  E-value=1.9e-06  Score=61.72  Aligned_cols=103  Identities=20%  Similarity=0.193  Sum_probs=70.6

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccccc-ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      ++.+..+.++.++...+.+... .++... +.+   +...+......  .......+++++|.+  ++.++++++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~--~~~~~~~~v~~~~~~--~~~~~~~~~~l~~~   78 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLA--SGPDLQTPVGEVMSS--PLLTVPADTSLYDA   78 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHh--cCCCCCcCHHHhcCC--CceEECCCCCHHHH
Confidence            4566777788888887765443 232221 111   11111110000  011145678899987  78999999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++.|.+.+...+||+|++|++.|+|+.+|+.+
T Consensus        79 l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          79 RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            99999999999999998899999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.31  E-value=2e-06  Score=78.31  Aligned_cols=102  Identities=23%  Similarity=0.223  Sum_probs=75.1

Q ss_pred             ccccCCCCchhhhhhhhccCC-ccccccc----c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVSALRR----S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      +.+.++.++.++...+.++.. .++...+    .    -+...+..+     .......+|.++|++..+++++++++++
T Consensus       108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~-----~~~~~~~~V~dIMt~~~~~itv~~d~~l  182 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRI-----SRMSLDTKVKDFMTPFEKLVTANEGTTL  182 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhc-----cccCCCCCHHHHhCCCCCeEEECCCCcH
Confidence            567788899999988876654 2222211    1    111122111     0123456899999964468899999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      .+++++|.++++..+||+|++|+++|+||.+|+++.
T Consensus       183 ~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        183 KEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence            999999999999999999988999999999999875

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.31  E-value=2.2e-06  Score=62.07  Aligned_cols=103  Identities=18%  Similarity=0.248  Sum_probs=68.3

Q ss_pred             ccccCCCCchhhhhhhhccCC-ccc--cccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVS--ALRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      +.+..+.++.++...+.+... .++  ...+..   +...+...... ........++.++|..  ++.++.+++++.++
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~   80 (115)
T cd04593           4 PVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE-ADEAGEPSAVDEVATP--PLLTVHPDEPLAHA   80 (115)
T ss_pred             cEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh-cccccccccHHHhccC--CceEECCCCCHHHH
Confidence            345567778888877765543 222  221111   11111100000 0111123357888887  79999999999999


Q ss_pred             HHHHHhcCCceeEEEcCC--CcEEEEEehhhhhh
Q 025984          108 LEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA  139 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~--g~~~Giv~~~dl~~  139 (245)
                      +++|.+++...+||+|++  |+++|+|+..|+.+
T Consensus        81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            999999999999999987  79999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.31  E-value=2.9e-06  Score=60.37  Aligned_cols=97  Identities=12%  Similarity=0.119  Sum_probs=67.5

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccc--cccccc---cccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSA--LRRSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      ++.+..+.+..+++..+.+... .+..  ..+.+.   ...+. +       .....++.++|.+  ....+.+++++.+
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl-~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~   72 (106)
T cd04582           3 PITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREA-A-------RASGGCCGDHAEP--FKVTVSVDDDLRI   72 (106)
T ss_pred             CcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHH-H-------Hhcccchhhhccc--CCEEECCCCCHHH
Confidence            3455667778888877755543 2222  222221   11110 0       0012357888987  6788999999999


Q ss_pred             HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      +++.|.+++...+||+|++|+++|+|+.+|+..
T Consensus        73 ~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          73 VLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            999999999999999998899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.30  E-value=2.1e-06  Score=74.20  Aligned_cols=104  Identities=19%  Similarity=0.186  Sum_probs=74.8

Q ss_pred             cccccCCCCchhhhhhhhccCC-ccc--cccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVS--ALRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      ++.+..+.++.++...+..... .++  ...+.+   ....+......  .......++.++|++  ++.++.+++++.+
T Consensus       209 ~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~--~~~~~~~~v~~im~~--~~~~v~~~~~l~~  284 (321)
T PRK11543        209 IPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV--GGGALTTPVNEAMTR--GGTTLQAQSRAID  284 (321)
T ss_pred             CcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh--CCCCcCCcHHHhcCC--CCEEECCCCCHHH
Confidence            6778889999999988865543 333  222211   11111110000  111234568999998  8999999999999


Q ss_pred             HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      +++.|.+++...+||+|++|+++|+|+..|+.++
T Consensus       285 a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        285 AKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             HHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            9999999999999999988899999999999864

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.30  E-value=5.7e-06  Score=74.90  Aligned_cols=101  Identities=22%  Similarity=0.234  Sum_probs=74.7

Q ss_pred             cccccccCCCCchhhhhhhhccCC-ccccc-ccc-c---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSAL-RRS-S---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      ....++..+.++.++...+.++.. .++.. .+. +   ....+. ..      .....++.++|+.  +++++++++++
T Consensus        97 ~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL-~~------~~~~~~V~diMt~--~~itV~~d~sL  167 (479)
T PRK07807         97 DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADC-AG------VDRFTQVRDVMST--DLVTLPAGTDP  167 (479)
T ss_pred             cCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHH-hc------CccCCCHHHhccC--CceEECCCCcH
Confidence            445677888899999998876653 22221 111 1   111111 00      0123479999998  89999999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      .++++.|.+++...+||+|++|+++|+|+.+||.+.
T Consensus       168 ~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~  203 (479)
T PRK07807        168 REAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRA  203 (479)
T ss_pred             HHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence            999999999999999999988999999999999975

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.29  E-value=2.1e-06  Score=61.30  Aligned_cols=99  Identities=17%  Similarity=0.283  Sum_probs=69.3

Q ss_pred             cccccCCCCchhhhhhhhccCC-ccccc--cccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSAL--RRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      ...+..+.+..++...+.+... .++..  .+.+   +...+...      ......++.++|.+  .+..+++++++.+
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~------~~~~~~~v~~~~~~--~~~~v~~~~~~~~   75 (109)
T cd04583           4 PVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQ------AYKEAKSLEDIMLE--DVFTVQPDASLRD   75 (109)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHH------HhhcCCcHhHhhcC--CceEECCCCcHHH
Confidence            4456677788888888765543 22221  1111   11111000      00123468888987  7899999999999


Q ss_pred             HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      +.+.|.+.+...+||++++|+++|+++.+|+++
T Consensus        76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            999999999999999998899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.28  E-value=3.5e-06  Score=50.40  Aligned_cols=47  Identities=51%  Similarity=0.784  Sum_probs=42.9

Q ss_pred             ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       187 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                      +.++.+++++.++++.|.+.+.+.+||++++++++|+++..++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            56789999999999999999999999999878999999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.27  E-value=3.4e-06  Score=59.87  Aligned_cols=99  Identities=19%  Similarity=0.223  Sum_probs=66.8

Q ss_pred             ccccCCCCchhhhhhhhccCC-cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHHHHH
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILV  112 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~  112 (245)
                      ..+..+.+..++...+.++.. .++...+..+...-....+.  . .....++.++|.+  ++..+++++++.++++.|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~--~-~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~   78 (105)
T cd04599           4 ITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVR--R-AHPNRLVADAMTR--EVVTISPEASLLEAKRLME   78 (105)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhh--c-ccccCCHHHHccC--CCEEECCCCCHHHHHHHHH
Confidence            345667777888877765543 23222121111000000000  0 0123468889987  7999999999999999999


Q ss_pred             hcCCceeEEEcCCCcEEEEEehhhhh
Q 025984          113 EKRITGFPVIDDDWKLVGLVSDYDLL  138 (245)
Q Consensus       113 ~~~~~~~~Vvd~~g~~~Giv~~~dl~  138 (245)
                      +++...+||+|+ |+++|+|+.+|+.
T Consensus        79 ~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          79 EKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             HcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence            999999999997 8999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.27  E-value=2.2e-06  Score=61.87  Aligned_cols=55  Identities=27%  Similarity=0.441  Sum_probs=50.6

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhh
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~  138 (245)
                      ..++.++|.+  .+.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|++
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence            3468899987  788999999999999999999999999999889999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.26  E-value=2.8e-06  Score=62.41  Aligned_cols=50  Identities=20%  Similarity=0.337  Sum_probs=46.3

Q ss_pred             ccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhh
Q 025984           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (245)
Q Consensus        87 ~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~  138 (245)
                      ++|..  ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|+.
T Consensus        72 ~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          72 TIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             ccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            46766  789999999999999999999999999999889999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.26  E-value=4.7e-06  Score=59.55  Aligned_cols=99  Identities=22%  Similarity=0.223  Sum_probs=67.1

Q ss_pred             cccccCCCCchhhhhhhhccCC-ccc--ccccccc---cccccccccCCCCCCCCcceecccccCCCceeEECC-CCCHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVS--ALRRSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP-TTTVD  105 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~v~  105 (245)
                      ...+..+.++.++...+.+... .++  ...+.+.   ...+...      ......++.++|..  .+..+.. ++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~------~~~~~~~v~~~~~~--~~~~~~~~~~~l~   75 (110)
T cd04601           4 PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF------ETDLDKPVSEVMTP--ENLLTTVEGTSLE   75 (110)
T ss_pred             CeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee------cccCCCCHHHhccc--CceEEecCCCCHH
Confidence            4456667778888877754443 222  2222211   1111100      01134578899976  5666666 99999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++++.|.+.+.+.+||++++|+++|+|+.+|+++
T Consensus        76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            9999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.26  E-value=4.6e-06  Score=59.99  Aligned_cols=105  Identities=24%  Similarity=0.265  Sum_probs=69.1

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccccccccc----cccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      ++++..+.++.++...+.+... .++...+..+    ...+...............++.++|..  .+.++.+++++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~   80 (113)
T cd04622           3 VVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDDVDEA   80 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCCHHHH
Confidence            4456677778888877765433 2222111111    101100000000111223358899987  78999999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      .+.|...+...+||++++|+++|+++..|+.+
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.26  E-value=3e-06  Score=61.37  Aligned_cols=103  Identities=20%  Similarity=0.200  Sum_probs=67.0

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccc-cc---cccccccccccccCCCCCCCCcceecccccCCCceeEECC--CCCHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSA-LR---RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP--TTTVD  105 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~--~~~v~  105 (245)
                      ..++..+.++.++...+..... .++. ..   +..+...-....+....  ....+++++|..  ....+..  ++++.
T Consensus         4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~--~~~~~v~~~~~~--~~~~~~~~~~~~l~   79 (114)
T cd04602           4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT--DSETPLSEVMTP--REVLVVAPTGITLE   79 (114)
T ss_pred             CeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh--ccCCCHHHhcCC--CceEEECCCCCCHH
Confidence            3455677788888888765442 2222 11   11111100000000000  123458899987  5667755  99999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++++.|.+++...+||++++|+++|+|+.+|+.+
T Consensus        80 ~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          80 EANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             HHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            9999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.25  E-value=4.5e-06  Score=61.01  Aligned_cols=49  Identities=33%  Similarity=0.491  Sum_probs=45.1

Q ss_pred             CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|++.+..
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~   50 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK   50 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence            4678999999999999999999999999998899999999999997653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.25  E-value=2.5e-06  Score=61.22  Aligned_cols=101  Identities=24%  Similarity=0.302  Sum_probs=70.1

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccccc-ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      ++++..+.++.++...+..... .++... +.+   +...+.....   .......++.++|.+  ++..+.+++++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~---~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~   78 (110)
T cd04595           4 VKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKAL---RHGLGHAPVKDYMST--DVVTVPPDTPLSEV   78 (110)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHH---hcccccCcHHHHhcC--CCEEECCCCcHHHH
Confidence            4566677788888888764443 333221 221   1111111100   111145678899987  78999999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++.|.+++...+||++ +|+++|+|+..|+.+
T Consensus        79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            9999999999999999 789999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.24  E-value=2.7e-06  Score=61.10  Aligned_cols=102  Identities=17%  Similarity=0.107  Sum_probs=69.3

Q ss_pred             ccccCCCCchhhhhhhhccCC-ccccc-cccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHH
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVSAL-RRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL  108 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~  108 (245)
                      +++..+.++.++...+.++.. .++.. .+..   +...+...... ........++.++|.+  ++..+++++++.+++
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~   80 (111)
T cd04589           4 LIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVL-LDGLPSSTPVGEIATF--PLITVDPDDFLFNAL   80 (111)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHH-cCCCCCCCCHHHHhCC--CcEEECCCCcHHHHH
Confidence            456677888888888765543 23321 1111   11111100000 0112234578899987  799999999999999


Q ss_pred             HHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       109 ~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      +.|.+++...+||+|+ |+++|+|+..|+.+
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            9999999999999985 89999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.24  E-value=5.4e-06  Score=62.30  Aligned_cols=50  Identities=36%  Similarity=0.474  Sum_probs=46.2

Q ss_pred             CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+||..|+++++..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence            46889999999999999999999999999988999999999999998764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=2.2e-06  Score=62.57  Aligned_cols=56  Identities=38%  Similarity=0.657  Sum_probs=50.8

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ...++.++|..  ++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            34578888987  7999999999999999999999999999998 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.23  E-value=2.8e-06  Score=60.93  Aligned_cols=100  Identities=13%  Similarity=0.182  Sum_probs=68.9

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccc--ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSA--LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      ++.+..+.++.++...+.+... .++.  ..+.+   ....+......     ....++.++|..  ++..+.+++++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~-----~~~~~~~~~~~~--~~~~v~~~~~l~~   76 (110)
T cd04605           4 VVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA-----RDKKSVEDIMTR--NVITATPDEPIDV   76 (110)
T ss_pred             CEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-----hCccCHHHhcCC--CCeEECCCCcHHH
Confidence            4456777888888887765543 2322  21221   11111100000     012358888877  7899999999999


Q ss_pred             HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      +++.|.+++...+||++++|+++|+|+..|+.+
T Consensus        77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          77 AARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            999999999999999998899999999999863

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.23  E-value=2.4e-06  Score=61.47  Aligned_cols=105  Identities=17%  Similarity=0.115  Sum_probs=69.3

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccc-ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSA-LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      ++.+..+.++.++...+.++.. .+.. ..+.+   +...+...............++.++|.+  ++.++.+++++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~l~~~   80 (113)
T cd04587           3 PATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTPVLEA   80 (113)
T ss_pred             CeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCCHHHH
Confidence            4455667778888877765443 2221 11211   1111110000000111112578899987  78899999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++.|.+++...+||++++|+++|+|+..|++.
T Consensus        81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          81 LHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            99999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.22  E-value=3.1e-06  Score=75.49  Aligned_cols=103  Identities=15%  Similarity=0.112  Sum_probs=78.8

Q ss_pred             cccccccCCCCchhhhhhhhccCC-ccccccccc------ccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  103 (245)
                      .++.++..+.+..++...+.++.. .+|.+++..      .+..+......  .   ....+.++|++   +.+++++++
T Consensus       201 ~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~--~---~~~~l~~~~~~---~~~Vpe~~~  272 (408)
T TIGR03520       201 LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN--K---KNFDWQSLLRE---PYFVPENKK  272 (408)
T ss_pred             HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc--c---CCCCHHHHcCC---CeEeCCCCc
Confidence            346678889999999999887776 888776531      12222211001  0   23457788876   789999999


Q ss_pred             HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +.++++.|++++.+.++|+|+.|..+|+||.+|++...
T Consensus       273 l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileei  310 (408)
T TIGR03520       273 LDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEI  310 (408)
T ss_pred             HHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999999863

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.22  E-value=3.1e-06  Score=61.57  Aligned_cols=56  Identities=39%  Similarity=0.748  Sum_probs=51.4

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ..++.++|.+  ++.++++++++.++++.|.+.+...+||++++|+++|+|+..|+++
T Consensus        66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            4578899987  7999999999999999999999999999998899999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.21  E-value=3.5e-06  Score=60.45  Aligned_cols=57  Identities=23%  Similarity=0.445  Sum_probs=51.9

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      ..+++++|.+  ++..+.+++++.++++.|...+...+||+|++|+++|+|+..|++++
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            4578899987  78999999999999999999999999999988999999999999863

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.21  E-value=3.5e-06  Score=59.98  Aligned_cols=98  Identities=16%  Similarity=0.262  Sum_probs=67.7

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccccc-ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      ++.+..+.+..++...+..... .++... +.+   ++..+...       .....+++++|.+  .+.++.+++++.++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~-------~~~~~~~~~~~~~--~~~~v~~~~~l~~~   74 (107)
T cd04610           4 VITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLG-------KDPDETVEEIMSK--DLVVAVPEMDIMDA   74 (107)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc-------cCccccHHHhCCC--CCeEECCCCCHHHH
Confidence            3455667777787777654332 222211 111   11111100       0123468899987  78999999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++.|.+++...+||++++|+++|+++..|+++
T Consensus        75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          75 ARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.20  E-value=2.9e-06  Score=62.70  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=66.2

Q ss_pred             ccccCCCCchhhhhhhhccCC-ccc--cccccc---ccccccccc-----cCCCCCCCCcceecccccCCCceeE--E--
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVS--ALRRSS---AVFASGTLT-----ANSAAPSSGVYTVGDFMTTKEELHV--V--   98 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~v~~im~~~~~~~~--v--   98 (245)
                      ..+..+.++.++...+.++.. .++  ...+..   +...+....     ...........++.++|.+  +...  +  
T Consensus         4 ~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~~~~~~   81 (126)
T cd04640           4 IVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KEDLKALDL   81 (126)
T ss_pred             eEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hhhhccccH
Confidence            345667788888888765553 222  211111   111221110     0000012235678999986  4333  3  


Q ss_pred             --CCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhh
Q 025984           99 --KPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA  139 (245)
Q Consensus        99 --~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~  139 (245)
                        .+++++.++++.|.+++.+.+||+|++ |+++|+|+.+|+.+
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence              368899999999999999999999986 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.20  E-value=3.9e-06  Score=60.41  Aligned_cols=102  Identities=19%  Similarity=0.263  Sum_probs=69.3

Q ss_pred             cccCCCCchhhhhhhhccCC-cccc--ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHH
Q 025984           35 CLLLSRPGCRVFSVLATSSD-RVSA--LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL  108 (245)
Q Consensus        35 ~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~  108 (245)
                      ++..+.+..+++..+.+... .++.  ..+.+   +...+...... ....+...++.++|..  ++.++..++++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~   81 (113)
T cd04615           5 CVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYAL-ESEELKDAKVREVMNS--PVITIDANDSIAKAR   81 (113)
T ss_pred             EeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhh-hhhhhcCCcHHHhccC--CceEECCCCcHHHHH
Confidence            44566777888777765543 2222  21121   11111111000 1122345678899987  789999999999999


Q ss_pred             HHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       109 ~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      +.|.+++...+||+|++|+++|+++..|+.+
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            9999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.20  E-value=4.1e-06  Score=76.38  Aligned_cols=108  Identities=17%  Similarity=0.185  Sum_probs=79.0

Q ss_pred             cccccccccCCCCchhhhhhhhccCC-ccccccc----cc----ccccccccccCCCCCCCCcceecccccCCCceeEEC
Q 025984           29 FALQLPCLLLSRPGCRVFSVLATSSD-RVSALRR----SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVK   99 (245)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~   99 (245)
                      +..+..++..+.++.++...+.++.. .++...+    ..    ....+...      ......+|.++|++..++++++
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~------v~~~~~~V~eIMt~~~~lvtv~  179 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF------VNDRETKLSEVMTSDDDLVTAP  179 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh------ccccCCcHHHHhccCCCcEEEC
Confidence            44567778889999999988876664 3332221    11    11111100      0123568999999732388999


Q ss_pred             CCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhc
Q 025984          100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (245)
Q Consensus       100 ~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~  142 (245)
                      +++++.++++.|.+++...+||+|++|+++|+|+.+|+.+...
T Consensus       180 ~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        180 AGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            9999999999999999999999999999999999999998754

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=3.6e-06  Score=60.47  Aligned_cols=102  Identities=24%  Similarity=0.284  Sum_probs=69.1

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      ++.+..+.++.++...+.+... .++...  +.+   +...+... .. ........++.++|..  ++.++.+++++.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~-~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~   78 (111)
T cd04626           3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILD-LD-LFESFLEKKVFNIVSQ--DVFYVNEEDTIDE   78 (111)
T ss_pred             ceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHH-HH-hhcccccCcHHHHhcC--CcEEEcCCCcHHH
Confidence            4556677788888888765543 333221  111   11111100 00 0011123478888987  7899999999999


Q ss_pred             HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      +++.|.+++...+||+++ |+++|+|+..|+..
T Consensus        79 ~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          79 ALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            999999999999999997 89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=4.2e-06  Score=61.12  Aligned_cols=57  Identities=39%  Similarity=0.612  Sum_probs=51.7

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ...++.++|..  ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+..
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            35678889987  7899999999999999999999999999998889999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=3.6e-06  Score=60.42  Aligned_cols=55  Identities=27%  Similarity=0.439  Sum_probs=50.5

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      .++.++|..  ++..+.+++++.++++.|.+++...+||++++|+++|+++..|+..
T Consensus        56 ~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            478899987  7999999999999999999999999999998799999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.18  E-value=3.9e-06  Score=61.31  Aligned_cols=57  Identities=32%  Similarity=0.538  Sum_probs=51.5

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ...++.++|..  ++..+..++++.++++.|.+++.+.+||+|++|+++|+++..|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            34578888877  7899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=4e-06  Score=61.51  Aligned_cols=56  Identities=41%  Similarity=0.723  Sum_probs=50.9

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ..++.++|.+  +++++++++++.++++.|.+.+...+||+|++|+++|+|+..|+.+
T Consensus        69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            3478888887  7999999999999999999999999999998789999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=4.1e-06  Score=60.24  Aligned_cols=55  Identities=31%  Similarity=0.462  Sum_probs=49.8

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ..++.++|..  ++.++.+++++.++++.|.+++...+||++ +|+++|+|+.+|+.+
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            3578899987  788999999999999999999999999998 589999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.16  E-value=3.5e-06  Score=60.50  Aligned_cols=101  Identities=18%  Similarity=0.139  Sum_probs=67.1

Q ss_pred             cccccCCCCchhhhhhhhccCC-ccc--ccc-ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVS--ALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~--~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      +.++..+.++.++...+.++.. .++  ... +.+   +...+......  . .....++.++|.   ++..+.+++++.
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~--~-~~~~~~~~~~~~---~~~~v~~~~~l~   76 (111)
T cd04590           3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA--E-GEEDLDLRDLLR---PPLFVPESTPLD   76 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH--c-CCCcCCHHHHhc---CCeecCCCCcHH
Confidence            4556778888888888876543 222  222 211   11111000000  0 011145666664   478899999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++++.|.+++.+.+||+|++|+++|+|+..|+.+
T Consensus        77 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          77 DLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            9999999999999999998899999999999873

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.16  E-value=1.3e-05  Score=70.68  Aligned_cols=121  Identities=25%  Similarity=0.359  Sum_probs=94.6

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEc-CCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd-~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      .+..+.+..++.++...+.+++++++||.| +.|.+.++++.+-+++.....+...            |  +       .
T Consensus       163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~------------~--~-------~  221 (381)
T KOG1764|consen  163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL------------P--L-------P  221 (381)
T ss_pred             CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccc------------c--c-------H
Confidence            348899999999999999999999999999 4589999999999998754222211            1  0       0


Q ss_pred             hccCCcccccc---cCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          173 KTNGKMVGDLM---TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       173 ~~~~~~v~~~m---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      .....++.++-   -.+...+.+++++.+|+++|...++..+||||++|+.+|+++..|+.....+
T Consensus       222 ~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~  287 (381)
T KOG1764|consen  222 SLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE  287 (381)
T ss_pred             HHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc
Confidence            11123333321   1257889999999999999999999999999999999999999999877654

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.16  E-value=6.7e-06  Score=58.99  Aligned_cols=103  Identities=22%  Similarity=0.189  Sum_probs=68.8

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccccc-ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      +.++..+.++.++...+.+... .++... +.+   +...+...... ........++.++|..  +++.+++++++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~   79 (111)
T cd04800           3 PVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVV-AEGLDPDTPVSEVMTA--PPITIPPDATVFEA   79 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHh-ccCCCccCCHHHHhCC--CCeEECCCCcHHHH
Confidence            3445667778888877765443 232211 211   11111100000 0111234578899987  79999999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++.|.+++...+||+++ |+++|+++..|+.+
T Consensus        80 ~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          80 LLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            99999999999999987 89999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=8e-06  Score=58.67  Aligned_cols=103  Identities=20%  Similarity=0.316  Sum_probs=67.6

Q ss_pred             ccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHH
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL  108 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~  108 (245)
                      ..+..+.++.++...+..+.. .++...+..    +...+...............++.++|.+  ++..+.+++++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~   81 (112)
T cd04802           4 ITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNASLNEAA   81 (112)
T ss_pred             EEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCCHHHHH
Confidence            345567778888877765543 222211111    1111110000000111234578899987  789999999999999


Q ss_pred             HHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       109 ~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      +.|.+++...+||+|++ +++|+|+..|+..
T Consensus        82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            99999999999999875 8999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.12  E-value=7.2e-06  Score=61.59  Aligned_cols=55  Identities=31%  Similarity=0.583  Sum_probs=50.3

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ..++.++|.+  ++..+.+++++.++++.|.+++.+.+||+++ |+++|+|+..|+.+
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            4578999987  7889999999999999999999999999987 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.11  E-value=6e-06  Score=60.16  Aligned_cols=56  Identities=38%  Similarity=0.595  Sum_probs=50.6

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ...++.++|..  ++.++..++++.++++.|.+++...+||+++ |+++|+++.+|+.+
T Consensus        65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            44678899988  7899999999999999999999999999987 89999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.10  E-value=1.7e-05  Score=58.55  Aligned_cols=51  Identities=37%  Similarity=0.625  Sum_probs=46.3

Q ss_pred             CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       185 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      +++.++.++.++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++.+..
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~   52 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS   52 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH
Confidence            357889999999999999999999999999988999999999999987654

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.10  E-value=4.8e-06  Score=62.26  Aligned_cols=55  Identities=38%  Similarity=0.498  Sum_probs=50.6

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ..++.++|.+  ++..+.+++++.++++.|.+.+.+.+||+| +|+++|+|+.+|+.+
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            4578899987  799999999999999999999999999999 799999999999874

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.10  E-value=8.8e-06  Score=74.15  Aligned_cols=104  Identities=22%  Similarity=0.217  Sum_probs=76.1

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc----ccc----cccccccccCCCCCCCCcceecccccCCCceeEECCCC
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR----SSA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT  102 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  102 (245)
                      ...++..+.++.++...+.++.. .++...+    ..+    ...+...      ......++.++|++..+++++++++
T Consensus       105 dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~------~~~~~~~V~diMt~~~~lvtv~~~~  178 (495)
T PTZ00314        105 DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF------VKDKSTPVSEVMTPREKLVVGNTPI  178 (495)
T ss_pred             CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh------cccCCCCHHHhhCCcCCceEeCCCC
Confidence            34577888899999988876654 3332221    111    1111100      0113467999998654689999999


Q ss_pred             CHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       103 ~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ++.++.++|.+++...+||+|++++++|+||.+|+.+..
T Consensus       179 sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        179 SLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             CHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence            999999999999999999999999999999999999763

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.09  E-value=8.5e-06  Score=58.34  Aligned_cols=55  Identities=22%  Similarity=0.412  Sum_probs=50.2

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      .++.++|..  ++.++++++++.++++.|.+.+.+.+||++++|+++|+|+..|+.+
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            568888877  7899999999999999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.08  E-value=1.1e-05  Score=57.82  Aligned_cols=90  Identities=20%  Similarity=0.296  Sum_probs=64.1

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc----ccccccccccccCCCCCCCCcceecc-------cccCCCceeEEC
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR----SSAVFASGTLTANSAAPSSGVYTVGD-------FMTTKEELHVVK   99 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~-------im~~~~~~~~v~   99 (245)
                      +++++..+.++.++...+.+... .++...+    ..+.               +-.+..+       +|.+  ++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~---------------G~v~~~dl~~~~~~~m~~--~~~~v~   65 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLV---------------GYILRSQLVVALKNYIDP--SPFTVS   65 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEE---------------EEEeHHHHHHHHHHhccC--CCceEC
Confidence            35667778888888877765532 2322211    1110               1111111       7877  788999


Q ss_pred             CCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       100 ~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      +++++.++.+.|.+++...+||++ +|+++|+|+.+|+.+
T Consensus        66 ~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          66 PRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            999999999999999999999995 689999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.08  E-value=5.9e-06  Score=59.52  Aligned_cols=55  Identities=38%  Similarity=0.607  Sum_probs=50.1

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ..++.++|.+  ++..+.+++++.++++.|.+++...+||+|+ |+++|+|+.+|+.+
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            4578899987  7899999999999999999999999999997 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.08  E-value=1.1e-05  Score=59.44  Aligned_cols=51  Identities=22%  Similarity=0.420  Sum_probs=46.2

Q ss_pred             ccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        87 ~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      +.|..  ++..+++++++.++++.|.+++.+.+||+|++|+++|+|+..|+.+
T Consensus        75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            45655  7899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.08  E-value=7.9e-06  Score=60.81  Aligned_cols=53  Identities=36%  Similarity=0.605  Sum_probs=49.3

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++.++|.+  ++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+
T Consensus        79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            78889987  7899999999999999999999999999998 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.07  E-value=1e-05  Score=70.10  Aligned_cols=59  Identities=25%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             CCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          176 GKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       176 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      ..+++++|.+  +++++++++++.++++.|.+.+...+||+|++|+++|+||.+|+.+.+.
T Consensus       201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~  261 (326)
T PRK10892        201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD  261 (326)
T ss_pred             cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence            3468899987  8999999999999999999999888888898899999999999987543

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.06  E-value=6.5e-06  Score=70.15  Aligned_cols=104  Identities=19%  Similarity=0.178  Sum_probs=75.8

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccccc------cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS------SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      ++.++..+.++.++...+..... .++...+.      -++..+......  . .....++.++|++   +.++++++++
T Consensus        78 ~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~--~-~~~~~~l~~l~r~---~~~V~e~~~l  151 (292)
T PRK15094         78 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR--S-DAEAFSMDKVLRQ---AVVVPESKRV  151 (292)
T ss_pred             HEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh--c-cCCcCCHHHHcCC---CcCcCCCCcH
Confidence            46688889999999988876664 66655432      111111111000  0 0112357889987   5689999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      .++++.|++++.+.+||+|+.|.++|+||.+|++..+
T Consensus       152 ~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~i  188 (292)
T PRK15094        152 DRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  188 (292)
T ss_pred             HHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHH
Confidence            9999999999999999999999999999999999863

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.05  E-value=1.1e-05  Score=57.66  Aligned_cols=102  Identities=25%  Similarity=0.321  Sum_probs=68.2

Q ss_pred             ccccCCCCchhhhhhhhccCC-ccccc-cccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHH
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVSAL-RRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL  108 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~  108 (245)
                      ..+..+.++.++...+.+... .++.. .+.+   ....+......  .......++.++|.+  ++..+.+++++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~--~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~   79 (111)
T cd04612           4 VTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPA--EGREATVLVGDVMTR--DPVTASPDETLRDAL   79 (111)
T ss_pred             EEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHh--cCcccccCHHHhccC--CCeEECCCCCHHHHH
Confidence            345567788888887765443 33221 1221   11111100000  011111367788887  799999999999999


Q ss_pred             HHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984          109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus       109 ~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      +.|.+++.+.+||+|++|+++|+++..|+.+
T Consensus        80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            9999999999999998899999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.05  E-value=3.9e-05  Score=69.32  Aligned_cols=102  Identities=21%  Similarity=0.279  Sum_probs=75.6

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccccc----c----ccccccccccCCCCCCCCcceeccccc-CCCceeEECCC
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS----S----AVFASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPT  101 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~  101 (245)
                      ++.++..+.++.++...+.++.. .++...+.    .    .+..+...     . .....++.++|+ .  ++++++++
T Consensus        89 ~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~-----~-~~~~~~V~dvm~~~--~~~~V~~~  160 (450)
T TIGR01302        89 DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF-----V-KDKGKPVSEVMTRE--EVITVPEG  160 (450)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh-----h-hcCCCCHHHhhCCC--CCEEECCC
Confidence            45677888899999988876654 44433221    1    11111100     0 112457899998 4  68999999


Q ss_pred             CCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       102 ~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +++.++++.|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus       161 ~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       161 IDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            9999999999999999999999999999999999999753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.04  E-value=2.1e-05  Score=56.81  Aligned_cols=50  Identities=28%  Similarity=0.456  Sum_probs=45.5

Q ss_pred             CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      .++++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~   51 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG   51 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence            46789999999999999999999999999988999999999999987753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.04  E-value=2.4e-05  Score=56.11  Aligned_cols=50  Identities=34%  Similarity=0.522  Sum_probs=45.2

Q ss_pred             CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~   51 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA   51 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence            46789999999999999999999999999988999999999999887543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.04  E-value=1e-05  Score=59.07  Aligned_cols=55  Identities=36%  Similarity=0.582  Sum_probs=50.5

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      .++.++|..  +++.+.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            468888987  7999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.02  E-value=1.3e-05  Score=57.09  Aligned_cols=53  Identities=30%  Similarity=0.492  Sum_probs=48.2

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ++.++|.+  ...+++++.++.++++.|.+++...+||+| +|+++|+++..|+..
T Consensus        51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            57788887  789999999999999999999999999998 589999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.02  E-value=2e-05  Score=47.03  Aligned_cols=46  Identities=41%  Similarity=0.710  Sum_probs=41.9

Q ss_pred             eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus        95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      +..+.+++++.++.+.|.+.+.+.+||++++++++|+++..++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            5678999999999999999999999999988899999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.99  E-value=2.9e-05  Score=68.49  Aligned_cols=112  Identities=21%  Similarity=0.211  Sum_probs=79.2

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      ...-++++++|.+  .......+.+  .+++.   ++...++|+|+     |+++..+...+..                
T Consensus       270 ~~~~l~a~~~m~~--~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~----------------  321 (382)
T TIGR03415       270 PLNVLTARSLMRP--LTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQA----------------  321 (382)
T ss_pred             cccceeHHHHhcc--cccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhh----------------
Confidence            4556688999966  2222333323  34433   67888999985     8888777654311                


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                    ......+.+ +.....++++++++.+++..+.+.+. .++|+|+ |+++|+|++.++++++..
T Consensus       322 --------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       322 --------------WAAEQEVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             --------------cccccchhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence                          001334555 55567889999999999999888776 5888885 999999999999998753

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.98  E-value=3.5e-05  Score=56.82  Aligned_cols=49  Identities=41%  Similarity=0.632  Sum_probs=44.5

Q ss_pred             CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      ++.++.+++++.+++++|.+.+...+||+|++|+++|+||..|+++.+.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~   50 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVV   50 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHh
Confidence            4678999999999999999999999999998899999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.96  E-value=1.9e-05  Score=73.64  Aligned_cols=105  Identities=15%  Similarity=0.135  Sum_probs=71.9

Q ss_pred             cccccCCCCchhhhhhhhccCC-cccc--ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSA--LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      .+.+..+.++.++...+.+... .++.  ..+..   ....+...... ........++.++|++  ++.++++++++.+
T Consensus       457 ~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~-~~~~~~~~~v~dim~~--~~~~v~~d~~L~~  533 (574)
T PRK01862        457 QTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLL-DKRDTTDKTAADYAHT--PFPLLTPDMPLGD  533 (574)
T ss_pred             CceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhh-cccccccchHHHhccC--CCeeECCCCCHHH
Confidence            4456677888888888765543 2222  11111   11111111000 0112233578899988  7899999999999


Q ss_pred             HHHHHHhcCCceeEEEcCC--CcEEEEEehhhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLAL  140 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~--g~~~Giv~~~dl~~~  140 (245)
                      +.+.|.+++.+.+||+|++  ++++|+|+.+|+.++
T Consensus       534 al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~  569 (574)
T PRK01862        534 ALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDA  569 (574)
T ss_pred             HHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHH
Confidence            9999999999999999876  579999999999975

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.93  E-value=3.2e-05  Score=69.96  Aligned_cols=62  Identities=35%  Similarity=0.538  Sum_probs=56.2

Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      ....++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+||.+|+++.+..
T Consensus       332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~  393 (454)
T TIGR01137       332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA  393 (454)
T ss_pred             hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc
Confidence            35678999999999999999999999999999999999999988999999999999987653

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.92  E-value=2.6e-05  Score=65.93  Aligned_cols=115  Identities=28%  Similarity=0.327  Sum_probs=88.2

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      ...-++++++|.+......-.....-..+...+.......+.+++..++.+|+|+..++...                  
T Consensus       270 ~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------------------  331 (386)
T COG4175         270 RSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA------------------  331 (386)
T ss_pred             hhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc------------------
Confidence            44566889999852122222233344568888888887788888877779999999987641                  


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                             .+...+.++..++++.+.+....+.+. .++|+|++|+++|+|++..++.++..
T Consensus       332 -----------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 -----------------------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             -----------------------cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence                                   245567889999999999999888776 68899999999999999999998764

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.88  E-value=3.4e-05  Score=55.67  Aligned_cols=104  Identities=25%  Similarity=0.335  Sum_probs=73.7

Q ss_pred             cccccccCCCCchhhhhhhhccCC-cccccccc----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      ...+++....+..++...+.++.. .++.....    -+...+......  .......++.++|..  ++.++.++.++.
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~--~~~~~~~~v~~v~~~--~~~~~~~~~~~~   82 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALA--AGGKRLLPVKEVMTK--PVVTVDPDTPLE   82 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHh--ccCCccccHHHhccC--CcEEECCCCCHH
Confidence            346677788889999999888875 44433321    111112111111  111111168999997  789999999999


Q ss_pred             HHHHHHHh-cCCceeEEEcCCC-cEEEEEehhhhh
Q 025984          106 EALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL  138 (245)
Q Consensus       106 ~~~~~~~~-~~~~~~~Vvd~~g-~~~Giv~~~dl~  138 (245)
                      ++.+.|.+ +++..+||+++++ +++|+++..|+.
T Consensus        83 ~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          83 EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            99999999 6999999999886 999999999973

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.86  E-value=3.1e-05  Score=65.02  Aligned_cols=58  Identities=33%  Similarity=0.436  Sum_probs=53.0

Q ss_pred             CcccccccCC-ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          177 KMVGDLMTPA-PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       177 ~~v~~~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      .++.++|.++ ++++.+++++.++++.|.+.+.+.++|+|++|+++|+|+..|+.+.+.
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~  213 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL  213 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence            5788999888 899999999999999999999999999998899999999999988653

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.86  E-value=3.8e-05  Score=69.14  Aligned_cols=104  Identities=16%  Similarity=0.102  Sum_probs=75.3

Q ss_pred             ccccCCCCchhhhhhhhccCC-cccc-cccccc----cccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVSA-LRRSSA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      +.+++..+..++...|..... .+.. ....|.    ...+.... ..........+|+++|+.  ++.++..++-+.+|
T Consensus       160 ~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~-v~~~g~~~~~~V~evmT~--p~~svd~~~~~feA  236 (610)
T COG2905         160 VTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSR-VIADGRSKTQKVSEVMTS--PVISVDRGDFLFEA  236 (610)
T ss_pred             cccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHH-HHhcCCCcccchhhhhcc--CceeecCcchHHHH
Confidence            456678888888888875554 1221 122221    11111111 112345567799999999  89999999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +-.|.+++++++||++ +|+++|+|+..||+...
T Consensus       237 ml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         237 MLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF  269 (610)
T ss_pred             HHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence            9999999999999997 58999999999999863

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.85  E-value=9.4e-05  Score=52.31  Aligned_cols=51  Identities=41%  Similarity=0.612  Sum_probs=45.9

Q ss_pred             CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                      ++.++.+++++.++++.|.+.+...+||++++++++|+++.+|+++.+...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~   52 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEG   52 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhc
Confidence            467899999999999999999999999999889999999999999887653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.80  E-value=8.2e-05  Score=52.93  Aligned_cols=49  Identities=29%  Similarity=0.445  Sum_probs=44.4

Q ss_pred             CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      ++.++.+++++.++...|.+.+.+.+||+++ |+++|+++..|+.+.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~   50 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE   50 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence            3678999999999999999999999999997 999999999999987653

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.79  E-value=4.7e-05  Score=55.21  Aligned_cols=57  Identities=18%  Similarity=0.287  Sum_probs=48.6

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCc---eeEEEcCCCcEEEEEehhhhhh
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~---~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ...+++++|.+  ++..+.+++++.++++.|.+++..   ..+|++++|+++|+|+..|+.+
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            34579999988  799999999999999999987753   4468888899999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.77  E-value=0.0004  Score=64.60  Aligned_cols=83  Identities=20%  Similarity=0.236  Sum_probs=61.5

Q ss_pred             ccCCcccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC--CcE
Q 025984           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKL  128 (245)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~--g~~  128 (245)
                      .|.+++. -++.|++..-.-.     ....-.+.|.++|..  ++..+..++|..|..+.+..+..+.+|+||+.  -.+
T Consensus       562 iYDSII~-IKklPYLPDlpps-----~~~~h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiL  633 (931)
T KOG0476|consen  562 IYDSIIR-IKKLPYLPDLPPS-----RSSVHTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMIL  633 (931)
T ss_pred             hhhheee-eccCCcCCCCCCc-----ccceeEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCccccee
Confidence            3444333 3446766543211     233456789999999  99999999999999999998879999999864  347


Q ss_pred             EEEEehhhhhhhh
Q 025984          129 VGLVSDYDLLALD  141 (245)
Q Consensus       129 ~Giv~~~dl~~~~  141 (245)
                      +|.|.++.|...+
T Consensus       634 lGSV~R~~L~~ll  646 (931)
T KOG0476|consen  634 LGSVARRYLTALL  646 (931)
T ss_pred             eehhHHHHHHHHH
Confidence            9999999887653

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=97.76  E-value=7.9e-05  Score=64.06  Aligned_cols=104  Identities=18%  Similarity=0.164  Sum_probs=77.4

Q ss_pred             cccccCCCCchhhhhhhhccCC-ccccccccc------ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      +-.+..+.|..++...+....+ .++.+++..      +|..+..+.+.  ++  .+.+-.++++-..++.++++.+++.
T Consensus       212 i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~--e~--~~~~k~d~~~~a~epyFVPe~Tpl~  287 (423)
T COG4536         212 IIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLN--EK--NEFTKEDILRAADEPYFVPEGTPLS  287 (423)
T ss_pred             eeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhh--cc--CcccHhHHHHHhcCCeecCCCCcHH
Confidence            4567789999999998876666 899888762      33333323222  11  1134444443333589999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      +.+..|.+++.+...||||-|.+.|+||.+|++.-
T Consensus       288 ~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEE  322 (423)
T COG4536         288 DQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEE  322 (423)
T ss_pred             HHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHH
Confidence            99999999999999999999999999999999863

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.72  E-value=7.8e-05  Score=56.40  Aligned_cols=55  Identities=31%  Similarity=0.642  Sum_probs=49.7

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      ..++.++|..  ++.++++++++.++++.|.+.+...+||+++ |+++|+|+..|++.
T Consensus        88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            4567888987  7999999999999999999999999999987 89999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=97.71  E-value=6.7e-05  Score=67.02  Aligned_cols=106  Identities=14%  Similarity=0.050  Sum_probs=76.8

Q ss_pred             cccccccCCCCchhhhhhhhccCC-ccccccccc------ccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  103 (245)
                      .++.+++.+.+..++...+.+..+ .+|.+++..      .+..+...... .........+.+++++   +..++++++
T Consensus       197 ~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~-~~~~~~~~~l~~~~r~---~~~Vpe~~~  272 (413)
T PRK11573        197 NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT-EKKEFTKENMLRAADE---IYFVPEGTP  272 (413)
T ss_pred             ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh-ccCcCCHHHHHhhccC---CeEeCCCCc
Confidence            467788889999999999876665 888876642      12222111000 0011111234466665   789999999


Q ss_pred             HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      +.++++.|++++.+-+.|+|+.|...|+||.+|++..
T Consensus       273 l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEe  309 (413)
T PRK11573        273 LSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE  309 (413)
T ss_pred             HHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHH
Confidence            9999999999999999999999999999999999975

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.66  E-value=0.0001  Score=52.33  Aligned_cols=54  Identities=37%  Similarity=0.551  Sum_probs=47.7

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      .++.++|..  ++.++..++++.+++..|.+++...+||+|+ |+++|+++..|+..
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            356777877  7888999999999999999999999999985 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.58  E-value=0.00019  Score=64.59  Aligned_cols=105  Identities=15%  Similarity=0.107  Sum_probs=73.9

Q ss_pred             ccccccccCCCCchhhhhhhhccC-Ccccccccc------cccccccccccCCCCCCCCcceecccccCCCceeEECCCC
Q 025984           30 ALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRS------SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT  102 (245)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  102 (245)
                      ..++.+++.+.+..++...+.+.. ++++.+++.      -.+..+..........   .......+.   ++..+++++
T Consensus       215 R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~~~~---~~~~Vpet~  288 (429)
T COG1253         215 RTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRVLVR---PPLFVPETL  288 (429)
T ss_pred             cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhhccc---CCeEecCCC
Confidence            356777888899999999985555 478877743      1222222111110000   112222222   488999999


Q ss_pred             CHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       103 ~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      ++.++++.|++.+.+-+.|+|+.|...|+||.+|++..
T Consensus       289 ~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEe  326 (429)
T COG1253         289 SLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEE  326 (429)
T ss_pred             cHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHH
Confidence            99999999999999999999999999999999999986

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.45  E-value=0.00024  Score=60.66  Aligned_cols=62  Identities=23%  Similarity=0.354  Sum_probs=57.5

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~  142 (245)
                      ...+.++..+|++  ++.++.+.+++..+.+.|--.++.-+||+|++.+++|+|++.|+++.+.
T Consensus       245 ~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         245 KKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             CCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence            3467799999999  8999999999999999999999999999999999999999999998765

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.00034  Score=62.78  Aligned_cols=59  Identities=19%  Similarity=0.351  Sum_probs=54.7

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ....++++|.+  +++.+.+++..+++.+.+++++.-.+||||++++++|+||..|+....
T Consensus       194 ~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi  252 (451)
T COG2239         194 PDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             cHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence            45588999998  799999999999999999999999999999999999999999998764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.09  E-value=0.0011  Score=58.20  Aligned_cols=55  Identities=25%  Similarity=0.438  Sum_probs=49.4

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ++.+.+.+  ...++++++++.+++..|.++++. +||+|++|+++|+|+..+++.++
T Consensus       303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL  357 (363)
T ss_pred             chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence            46677776  788999999999999999999988 99999999999999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=96.95  E-value=0.0095  Score=52.10  Aligned_cols=104  Identities=22%  Similarity=0.144  Sum_probs=72.9

Q ss_pred             cccccCCCCchhhhhhhhccCC-ccccc----ccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSAL----RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      -.++.+...+.++.+....+.. .++.-    .++.+...-..+.++..  .-....+.++|++  ..++.+.+.++.++
T Consensus       118 p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~--~~~~~~~~~vmt~--~~~~~~~gi~l~~~  193 (503)
T KOG2550|consen  118 PIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL--EDNSLLVSDVMTK--NPVTGAQGITLKEA  193 (503)
T ss_pred             CcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh--hcccchhhhhccc--ccccccccccHHHH
Confidence            3455666677777777665554 23221    12222222222222211  2356688999999  66888999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      -+++++++-..+||||++|+++.++++.||.+.
T Consensus       194 neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  194 NEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             HHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence            999999999999999999999999999999874

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.63  E-value=0.0043  Score=55.28  Aligned_cols=56  Identities=23%  Similarity=0.285  Sum_probs=48.8

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhc
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~  142 (245)
                      ++.+.+.+  ...++.+++++.+++..+..+... +||+|++|+++|+|+..+++.++.
T Consensus       338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            56666766  688999999999999999987765 999999999999999999998753

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.86  E-value=0.12  Score=43.10  Aligned_cols=110  Identities=25%  Similarity=0.288  Sum_probs=65.9

Q ss_pred             eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhc------ccCCCCCCCCCCccccccccchhHHH
Q 025984           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS------ISGSGRADNSMFPEVDSTWKTFNEVQ  168 (245)
Q Consensus        95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (245)
                      ++.|+.|  +.||+++-     +.+.|++ +|+++-+-+..+++....      ..+.+.          ..|       
T Consensus       189 ivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~----------~~~-------  243 (309)
T COG1125         189 IVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESE----------RGL-------  243 (309)
T ss_pred             EEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhcccc----------ccc-------
Confidence            4444444  66666654     3466776 688999999888875311      000000          000       


Q ss_pred             HHHhhccCCcccccccCCc----eEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          169 KLLSKTNGKMVGDLMTPAP----VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       169 ~~~~~~~~~~v~~~m~~~~----~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                         .......+.+.+....    -.+.......+++..+...+...+||+|++|+++|.||..+++.+
T Consensus       244 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         244 ---RLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             ---cccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence               0011223333333221    113333445568888888999999999999999999999999865

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=95.40  E-value=0.029  Score=45.75  Aligned_cols=57  Identities=25%  Similarity=0.267  Sum_probs=51.2

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      .-+.+.++.+|   .+.+++...+.-.++.|+.++.+-+.|+|+-|...|+||.+|++.-
T Consensus       131 ~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEq  187 (293)
T COG4535         131 EPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQ  187 (293)
T ss_pred             ccccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHH
Confidence            33577788887   7889999999999999999999999999999999999999999864

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.89  E-value=0.047  Score=50.38  Aligned_cols=55  Identities=18%  Similarity=0.289  Sum_probs=49.7

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      ...-+|++  .++++++++++..+..+++.-+.+++.|++...+.+|++|++|+...
T Consensus       691 Dl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  691 DLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY  745 (762)
T ss_pred             ccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence            45567888  89999999999999999999999999999988888999999999864

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=94.52  E-value=0.038  Score=50.62  Aligned_cols=129  Identities=19%  Similarity=0.172  Sum_probs=92.8

Q ss_pred             CCCCCcceecccccCCCceeEECCCCCHH-HHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984           77 APSSGVYTVGDFMTTKEELHVVKPTTTVD-EALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMF  154 (245)
Q Consensus        77 ~~~~~~~~v~~im~~~~~~~~v~~~~~v~-~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~  154 (245)
                      ...+....++++|++-+++..+..+..+. +......+.+++.+||.+.+ ...+|.+-...+.......          
T Consensus       198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~----------  267 (498)
T KOG2118|consen  198 ALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE----------  267 (498)
T ss_pred             hHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc----------
Confidence            44567779999999988888888888776 55666668899999999864 3334443333333321000          


Q ss_pred             ccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                                       ......++...+......++.++++.+.++.|++...+.+.|.+ ..--+|+++..|+ ++..
T Consensus       268 -----------------~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~  328 (498)
T KOG2118|consen  268 -----------------VPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVV  328 (498)
T ss_pred             -----------------cccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhc
Confidence                             01124567777777788899999999999999988887776666 5568899999998 6655

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=93.42  E-value=0.16  Score=45.09  Aligned_cols=53  Identities=15%  Similarity=0.282  Sum_probs=43.0

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ++.+ +..  +..++++++++.+++..+.++++ .++|+|+ |+++|+|+..+++.++
T Consensus       327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       327 EVES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHAL  379 (382)
T ss_pred             chhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHH
Confidence            3444 333  57889999999999999887765 4888886 9999999999998763

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=89.54  E-value=0.47  Score=45.01  Aligned_cols=62  Identities=18%  Similarity=0.231  Sum_probs=53.9

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEEhHHHHHHHHHhH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~--g~~vGiIt~~dll~~~~~~~  237 (245)
                      ...++++|.++..++..+++..|..+.+....++.+|+||..  --++|.|.++.|...+..+.
T Consensus       587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~i  650 (931)
T KOG0476|consen  587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHI  650 (931)
T ss_pred             EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhc
Confidence            456899999999999999999999999988879999999853  36999999999998887643

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=89.26  E-value=0.95  Score=42.11  Aligned_cols=57  Identities=14%  Similarity=0.241  Sum_probs=48.9

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      .....+++|..  .+.++...++.+.+++++++-+.....|. ++|++.|+|+.+|++.+
T Consensus       637 ~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  637 SRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH  693 (696)
T ss_pred             CCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence            44566788877  78999999999999999999998888775 47999999999999875

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=89.13  E-value=0.78  Score=39.50  Aligned_cols=47  Identities=26%  Similarity=0.371  Sum_probs=40.9

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      .+..+..++++.+.+....+.. ..++|+|++|+++|+++...++.++
T Consensus       336 ~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL  382 (386)
T COG4175         336 DVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEAL  382 (386)
T ss_pred             cccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHH
Confidence            5788999999999999887665 4689999999999999999998764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=88.44  E-value=0.99  Score=37.75  Aligned_cols=61  Identities=23%  Similarity=0.282  Sum_probs=43.1

Q ss_pred             CCCcceecccccCCC--ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984           79 SSGVYTVGDFMTTKE--ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (245)
Q Consensus        79 ~~~~~~v~~im~~~~--~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~  139 (245)
                      .+...++.+.|.+..  +--.+.....-.+++..+...+...+||+|++|+++|.|+..++..
T Consensus       245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         245 LLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             ccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            345566777766521  1122333445556777777888899999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
4gqv_A	166	Crystal Structure Of Cbs-pair Protein, Cbsx1 From A		8e-81
3sl7_A	180	Crystal Structure Of Cbs-Pair Protein, Cbsx2 From A		3e-69
4gqw_A	152	Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop		6e-69
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		1e-10
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		3e-09
2yzq_A	282	Crystal Structure Of Uncharacterized Conserved Prot		8e-09
3kh5_A	280	Crystal Structure Of Protein Mj1225 From Methanocal		5e-08
3kpb_A	122	Crystal Structure Of The Cbs Domain Pair Of Protein		2e-06
3kpc_A	124	Crystal Structure Of The Cbs Domain Pair Of Protein		2e-06
2yvy_A	278	Crystal Structure Of Magnesium Transporter Mgte Cyt		8e-06
2yvx_A	473	Crystal Structure Of Magnesium Transporter Mgte Len		1e-05
2yvz_A	278	Crystal Structure Of Magnesium Transporter Mgte Cyt		1e-04
1zfj_A	491	Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.		1e-04
2p9m_A	138	Crystal Structure Of Conserved Hypothetical Protein		2e-04
3tsb_A	511	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		2e-04
4af0_A	556	Crystal Structure Of Cryptococcal Inosine Monophosp		3e-04
4af0_B	556	Crystal Structure Of Cryptococcal Inosine Monophosp		3e-04
2uv5_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		3e-04
4esy_B	170	Crystal Structure Of The Cbs Domain Of Cbs Domain C		3e-04
2o16_A	160	Crystal Structure Of A Putative Acetoin Utilization		4e-04
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		4e-04
4esy_A	170	Crystal Structure Of The Cbs Domain Of Cbs Domain C		5e-04
1o50_A	157	Crystal Structure Of A Cbs Domain-Containing Protei		5e-04

>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From Arabidopsis Thaliana Length = 166

Iteration: 1
 Score =  296 bits (757), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 143/165 (86%), Positives = 155/165 (93%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
           LDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E TNLEDA
Sbjct: 62  LDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 121
Query: 200 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 244
           A++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK + +  A
Sbjct: 122 AKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRNA 166

>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  258 bits (658), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 120/159 (75%), Positives = 145/159 (91%)
Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDF T ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
           ISG  + D ++FP+VDSTWKTFNE+QKL+SKT GK+VGDL TP+P+VVR++TNLEDAARL
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDSTNLEDAARL 123
Query: 203 LLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 241
           LLETK+RRLPVVDADGKL+GI+TRGNVVRAALQIK   +
Sbjct: 124 LLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNAD 162

>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop Deletion) From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  256 bits (655), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 130/165 (78%), Positives = 141/165 (85%), Gaps = 14/165 (8%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
           LDS               DSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E TNLEDA
Sbjct: 62  LDS--------------GDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 107
Query: 200 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 244
           A++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK + +  A
Sbjct: 108 AKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRNA 152

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 35/138 (25%)
Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           E++  + P  TVD AL ++ +  I G PV++D+ K+VG+++  D+ A +           
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDIAARE----------- 148
Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
                                  GK+V +LMT   + V E+  +E+A ++++E +  RLP
Sbjct: 149 -----------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLP 185
Query: 213 VVDADGKLVGIITRGNVV 230
           VVD  GKLVG+IT  ++V
Sbjct: 186 VVDERGKLVGLITMSDLV 203

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 34/130 (26%)
Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P  TV EA++++ E +I G PV+D++ +LVGL+++ D+                    
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV-------------------- 147
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVD 215
                     +K LSK     + DLMTP    +V     +LE A  +L + +  +LP+V 
Sbjct: 148 --------RFEKNLSKK----IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS 195
Query: 216 ADGKLVGIIT 225
            D KLVG+IT
Sbjct: 196 KDNKLVGLIT 205

>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Pyrococcus Horikoshii Length = 282

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 33/129 (25%)
Query: 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162
           T + ALE+  + ++  FPV++ + KLVG++S                             
Sbjct: 19  TRNYALELFKKYKVRSFPVVNKEGKLVGIIS----------------------------- 49
Query: 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVG 222
               V+++L   + + +  L+     VV+E   L+ AA+L+LE  YRR+ VVD+ GK VG
Sbjct: 50  ----VKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVG 105
Query: 223 IITRGNVVR 231
           I+T G+++R
Sbjct: 106 ILTVGDIIR 114

>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From Methanocaldococcus Jannaschii, A Putative Archaeal Homolog Of G-Ampk. Length = 280

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 29/140 (20%)
Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 151
           +E +  +K    +DEA+E  + K + G P+++D+ +L+ L+++ D++             
Sbjct: 91  EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI------------R 138
Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
           ++  ++D      NEV           + D +T   +V      L+D AR ++   +RRL
Sbjct: 139 ALLDKIDE-----NEV-----------IDDYITRDVIVATPGERLKDVARTMVRNGFRRL 182
Query: 212 PVVDADGKLVGIITRGNVVR 231
           PVV ++G+LVGIIT  + ++
Sbjct: 183 PVV-SEGRLVGIITSTDFIK 201

>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100 In Complex With 5 -Methylthioadenosine And S-Adenosyl-L- Methionine. Length = 122

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237
           +V D+++  P+      ++ +AA++L++     LP+VD  GKLVGIIT  ++ +A  Q K
Sbjct: 2   LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 61
Query: 238 HATE 241
              E
Sbjct: 62  KTIE 65

>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100 In Complex With 5 -Methylthioadenosine And S-Adenosyl-L- Methionine Length = 124

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237
           +V D+++  P+      ++ +AA++L++     LP+VD  GKLVGIIT  ++ +A  Q K
Sbjct: 4   LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 63
Query: 238 HATE 241
              E
Sbjct: 64  KTIE 67

>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic Domain, Mg2+ Bound Form Length = 278

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
           V ++M P  V VR  T+ E+ ARL+ +  +  LPVVD +G+LVGI+T  +V+
Sbjct: 201 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 252

>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Length = 473

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
           V ++M P  V VR  T+ E+ ARL+ +  +  LPVVD +G+LVGI+T  +V+
Sbjct: 221 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 272

>pdb|2YVZ|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic Domain, Mg2+-Free Form Length = 278

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
           V ++  P  V VR  T+ E+ ARL  +  +  LPVVD +G+LVGI+T  +V+
Sbjct: 201 VAEIXNPKVVYVRTDTDQEEVARLXADYDFTVLPVVDEEGRLVGIVTVDDVL 252

>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205) From Streptococcus Pyogenes Length = 491

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 34/144 (23%)
Query: 100 PTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           P   V EA E+    RI+G P+++   + KLVG++++ D                     
Sbjct: 105 PEHKVSEAEELXQRYRISGVPIVETLANRKLVGIITNRD--------------------- 143
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                      + +S  N  +     +   V     T+LE A R+L E +  +LP+VD  
Sbjct: 144 ----------XRFISDYNAPISEHXTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNS 193
Query: 218 GKLVGIITRGNVVRAALQIKHATE 241
           G+L G+IT  ++ +  ++  HA +
Sbjct: 194 GRLSGLITIKDIEK-VIEFPHAAK 216

>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922 From Methanocaldococcus Jannaschii Dsm 2661 Length = 138

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 32/136 (23%)
Query: 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN 165
           EA E  ++ +I+  PVIDD+ K++G+V+  D+                          +N
Sbjct: 29  EAFEKXLKYKISSLPVIDDENKVIGIVTTTDI-------------------------GYN 63
Query: 166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL-----LETKYRRLPVVDADGKL 220
            ++     T    +GD+ T   + + E  ++ +A +        E    +LPVVD + KL
Sbjct: 64  LIRD--KYTLETTIGDVXTKDVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNNKL 121
Query: 221 VGIITRGNVVRAALQI 236
           VGII+ G+++R   +I
Sbjct: 122 VGIISDGDIIRTISKI 137

>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Bacillus Anthracis Str. Ames Length = 511

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 33/128 (25%)
Query: 100 PTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           P   V +A  ++ + RI+G PV++  D+ KLVG++++ D+                    
Sbjct: 128 PEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM-------------------- 167
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                    +Q    K +  M  + +  APV     T L +A ++L + K  +LP+VD +
Sbjct: 168 -------RFIQDYSIKISDVMTKEQLITAPV----GTTLSEAEKILQKYKIEKLPLVDNN 216
Query: 218 GKLVGIIT 225
           G L G+IT
Sbjct: 217 GVLQGLIT 224

>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate Dehydrogenase Length = 556

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 36/135 (26%)
Query: 100 PTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
           P  TV + LEI  +    G P+ +    D KL+G+V+  D+                F +
Sbjct: 153 PDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV---------------QFQD 197
Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
            ++  K+                  +MT   V       LE A  LL ETK  +LP+VD+
Sbjct: 198 AETPIKS------------------VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS 239
Query: 217 DGKLVGIITRGNVVR 231
           +G LV ++ R ++++
Sbjct: 240 NGHLVSLVARSDLLK 254

>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate Dehydrogenase Length = 556

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 36/135 (26%)
Query: 100 PTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
           P  TV + LEI  +    G P+ +    D KL+G+V+  D+                F +
Sbjct: 153 PDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV---------------QFQD 197
Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
            ++  K+                  +MT   V       LE A  LL ETK  +LP+VD+
Sbjct: 198 AETPIKS------------------VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS 239
Query: 217 DGKLVGIITRGNVVR 231
           +G LV ++ R ++++
Sbjct: 240 NGHLVSLVARSDLLK 254

>pdb|4ESY|B Chain B, Crystal Structure Of The Cbs Domain Of Cbs Domain Containing Membrane Protein From Sphaerobacter Thermophilus Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ--I 236
           + D++T   V VRE   L+  A+  LE +    PVVD +G LVGIIT  + +R ++   I
Sbjct: 20  IRDILTSPVVTVREDDTLDAVAKTXLEHQIGXAPVVDQNGHLVGIITESDFLRGSIPFWI 79
Query: 237 KHATEM 242
             A+E+
Sbjct: 80  YEASEI 85

>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization Protein (Acub) From Vibrio Cholerae Length = 160

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           V D+MT  P  +  T  L DA  L+     R +P+VDA+ KL+GI+++ +++ A
Sbjct: 7   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAA 60

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 87  DFMTTK-EELHV--------VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           +FM+   EEL +        V+ TT V  AL I V+ R++  PV+D+  ++V + S +D+
Sbjct: 186 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 245
Query: 138 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 197
           + L +       D S              V K L   +    G L       + ET  LE
Sbjct: 246 INLAAEKTYNNLDVS--------------VTKALQHRSHYFEGVL----KCYLHET--LE 285
Query: 198 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
                L+E +  RL VVD    + GI++  ++++A
Sbjct: 286 AIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQA 320

>pdb|4ESY|A Chain A, Crystal Structure Of The Cbs Domain Of Cbs Domain Containing Membrane Protein From Sphaerobacter Thermophilus Length = 170

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ--I 236
           + D++T   V VRE   L+  A+  LE +    PVVD +G LVGIIT  + +R ++   I
Sbjct: 20  IRDILTSPVVTVREDDTLDAVAKTXLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWI 79
Query: 237 KHATEM 242
             A+E+
Sbjct: 80  YEASEI 85

>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein (Tm0935) From Thermotoga Maritima At 1.87 A Resolution Length = 157

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
           VV+  T ++E ++ ++E  +T    +  D KLVG++    LL +      G       P+
Sbjct: 28  VVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFG-----FIPK 82
Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
            +    +   +++L++K   +++ D     PV V   T LE+A +L+++   + +PVVD 
Sbjct: 83  EELIRSS---MKRLIAKNASEIMLD-----PVYVHMDTPLEEALKLMIDNNIQEMPVVDE 134
Query: 217 DGKLVG 222
            G++VG
Sbjct: 135 KGEIVG 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	1e-62
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-16
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-48
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-17
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-41
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-40
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	5e-15
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-40
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-16
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	5e-40
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	9e-16
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	8e-38
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-37
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-15
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-36
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-35
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-15
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-34
1pvm_A	184	Conserved hypothetical protein TA0289; structural	4e-14
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	5e-34
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-33
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	6e-16
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	8e-12
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-33
1vr9_A	213	CBS domain protein/ACT domain protein; structural	5e-33
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	2e-32
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-32
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-31
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-28
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-11
3ddj_A	296	CBS domain-containing protein; structural genomics	3e-30
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-28
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-30
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-26
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	5e-30
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-29
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-16
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-29
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-16
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-15
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-28
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-27
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-26
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-24
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	5e-24
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-12
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-26
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-26
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	8e-08
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	5e-25
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	2e-10
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	3e-23
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-21
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	9e-13
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-08
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	2e-18
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	8e-07
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	2e-17
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	1e-08
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	8e-05
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	3e-17
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	8e-09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	4e-17
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	1e-08
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	5e-05
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	1e-16
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	4e-09
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	4e-16
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	4e-07
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	6e-16
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	5e-07
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	2e-15
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	2e-13
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	4e-13
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	5e-13
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	6e-13
2oux_A	286	Magnesium transporter; 10001B, structural genomics	2e-12
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	3e-10
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	5e-10
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	7e-10
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-08
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	1e-07
3fio_A	70	A cystathionine beta-synthase domain protein fused	2e-05
3fio_A	70	A cystathionine beta-synthase domain protein fused	8e-05
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	4e-04
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	7e-04
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	8e-04

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score =  193 bits (491), Expect = 1e-62
 Identities = 122/159 (76%), Positives = 147/159 (92%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDFMT ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
           ISG  + D ++FP+VDSTWKTFNE+QKL+SKT GK+VGDLMTP+P+VVR++TNLEDAARL
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARL 123

Query: 203 LLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 241
           LLETK+RRLPVVDADGKL+GI+TRGNVVRAALQIK   +
Sbjct: 124 LLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNAD 162

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 10/84 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL----- 138
            VGD MT      VV+ +T +++A  +L+E +    PV+D D KL+G+++  +++     
Sbjct: 99  VVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ 156

Query: 139 ---ALDSISGSGRADNSMFPEVDS 159
                DSISG  + D ++FP+VDS
Sbjct: 157 IKRNADSISGRSQNDTNLFPDVDS 180

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score =  156 bits (396), Expect = 2e-48
 Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
           V  V   ++   +  VV+  T ++E ++ ++E  +T    +  D KLVG++    LL   
Sbjct: 15  VKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLK-- 70

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                  +    F  +       + +++L++K       ++M   PV V   T LE+A +
Sbjct: 71  ------VSGFHFFGFIPKEELIRSSMKRLIAKN----ASEIML-DPVYVHMDTPLEEALK 119

Query: 202 LLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237
           L+++   + +PVVD  G++VG +    ++ A  + +
Sbjct: 120 LMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR 155

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 165 NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGII 224
           +++         K V  L++  P VV E T +E+    +LE    R   V  D KLVG+I
Sbjct: 4   DKIHHHHHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMI 63

Query: 225 TRGNVVRAA 233
              ++++ +
Sbjct: 64  PVMHLLKVS 72

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score =  137 bits (347), Expect = 4e-41
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 24/160 (15%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TV  F+   +++  V+P   +D AL +L +   +  PV+D  +KL GL+S   ++     
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMM----- 66

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                   +    +     V ++M      +R   +L  A  L+
Sbjct: 67  -----------------DAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLI 109

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMG 243
           +   +  + V + DG   GI TR  V++   +  H    G
Sbjct: 110 VN--HPFVCVENDDGYFAGIFTRREVLKQLNKQLHRPNGG 147

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score =  134 bits (340), Expect = 3e-40
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 24/149 (16%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D M + E++  V+    ++ AL +LV+   +  PV+D  +KL GL+S   +  LD I
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMI--LDGI 73

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
            G  R +     E+                     V  +M     V++   +   A  + 
Sbjct: 74  LGLERIEFERLEEMK--------------------VEQVMKQDIPVLKLEDSFAKALEMT 113

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRA 232
           ++  +  +  V+ DG   GI+TR  +++ 
Sbjct: 114 ID--HPFICAVNEDGYFEGILTRRAILKL 140

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 72.0 bits (177), Expect = 4e-16
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 15/90 (16%)

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVV--VRETTNLEDAARLLLETKY 208
           N+M           +E Q++        V DLM  +  V  V+    LE A  +L+++ Y
Sbjct: 2   NAMI------SIPKDEFQQIF-------VKDLMISSEKVAHVQIGNGLEHALLVLVKSGY 48

Query: 209 RRLPVVDADGKLVGIITRGNVVRAALQIKH 238
             +PV+D   KL G+I+   ++   L ++ 
Sbjct: 49  SAIPVLDPMYKLHGLISTAMILDGILGLER 78

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score =  134 bits (339), Expect = 5e-40
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 24/155 (15%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+    ++     
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM----- 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                               F   +    K +   V ++M      +     +     ++
Sbjct: 70  -----------------NSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMV 112

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
           +      + V + +    GI TR  V++   +   
Sbjct: 113 IN--NGFVCVENDEQVFEGIFTRRVVLKELNKHIR 145

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 71.3 bits (175), Expect = 9e-16
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 166 EVQKLLSKTNGKMVGDLMTPAPVV--VRETTNLEDAARLLLETKYRRLPVVDADGKLVGI 223
           +  +LL  T    VG  M  A  V  V+   NLE A  +L +T Y  +PV+D   +L G+
Sbjct: 7   QSDQLLEAT----VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGL 62

Query: 224 ITRGNVVRAALQIKHA 239
           I    ++ +   ++  
Sbjct: 63  IGTNMIMNSIFGLERI 78

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  128 bits (324), Expect = 8e-38
 Identities = 29/152 (19%), Positives = 67/152 (44%), Gaps = 21/152 (13%)

Query: 84  TVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
            +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L  
Sbjct: 9   PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL-- 66

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
                     ++ ++  +      V + L + +                +   L      
Sbjct: 67  ------IKGGIYNDLSLS------VGEALMRRSD------DFEGVYTCTKNDKLSTIMDN 108

Query: 203 LLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
           + + +  R  VVD  G+LVG++T  ++++  L
Sbjct: 109 IRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 140

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score =  128 bits (324), Expect = 1e-37
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 22/161 (13%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLLA    
Sbjct: 6   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLA---- 59

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                         +S+ +   +   L  +T    + ++M      V     L+++A  +
Sbjct: 60  ------------AQESSLQRSAQGDSLAFETP---LFEVMHTDVTSVAPQAGLKESAIYM 104

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 244
            + K   LPVV     LVGIIT  + V  A+ +    E   
Sbjct: 105 QKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLELQEESE 144

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
             V D+MT  P  +  T  L DA  L+     R +P+VDA+ KL+GI+++ +++ A
Sbjct: 5   IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAA 60

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score =  122 bits (309), Expect = 1e-35
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 34/158 (21%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D MT    +   K    V EA E +++ +I+  PVIDD+ K++G+V+  D+      
Sbjct: 9   KVKDVMTKN--VITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIG----- 61

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                   +  L  T    +GD+MT   + + E  ++ +A + +
Sbjct: 62  ------------------YNLIRDKYTLETT----IGDVMTKDVITIHEDASILEAIKKM 99

Query: 204 L-----ETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236
                 E    +LPVVD + KLVGII+ G+++R   +I
Sbjct: 100 DISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI 137

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 17/64 (26%), Positives = 34/64 (53%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
           V D+MT   +  +    + +A   +L+ K   LPV+D + K++GI+T  ++    ++ K+
Sbjct: 10  VKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY 69

Query: 239 ATEM 242
             E 
Sbjct: 70  TLET 73

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score =  121 bits (306), Expect = 1e-34
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 28/149 (18%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+  ++     
Sbjct: 10  RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSII----- 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                             +     +K         +  +M      V+   +++D A  L
Sbjct: 63  -----------------KRFIPRNKKPDEVP----IRLVMRKPIPKVKSDYDVKDVAAYL 101

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRA 232
            E    R  VVD  G++VGI+T  ++ R 
Sbjct: 102 SENGLERCAVVDDPGRVVGIVTLTDLSRY 130

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
           V  +M      V   T + DA +++ E     L V D +G  VG+++  ++++  +
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI 66

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score =  119 bits (301), Expect = 5e-34
 Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 14/163 (8%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+      +LVG V   DL
Sbjct: 12  LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 71

Query: 138 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM--VGDLMTPAPVVVRETTN 195
           +          A       V ++   F E    L         + +++  +P  V + T 
Sbjct: 72  IISIE-----NARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTP 126

Query: 196 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
           +E    +  +   R+  V   +G+L+GIIT+ +V++   Q+ +
Sbjct: 127 MEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMAN 168

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score =  116 bits (294), Expect = 1e-33
 Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 33/148 (22%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V D ++            ++ EA +IL++  I   P++D+  KLVG+++ +D+       
Sbjct: 3   VKDILSKP--PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA------ 54

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
              +A                         N K + ++MT   +   E   ++  A  + 
Sbjct: 55  ---KA----------------------LAQNKKTIEEIMTRNVITAHEDEPVDHVAIKMS 89

Query: 205 ETKYRRLPVVDADGKLVGIITRGNVVRA 232
           +     +PVVD   ++VGI+T  ++ R 
Sbjct: 90  KYNISGVPVVDDYRRVVGIVTSEDISRL 117

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 70.6 bits (174), Expect = 6e-16
 Identities = 19/55 (34%), Positives = 35/55 (63%)

Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           +V D+++  P+      ++ +AA++L++     LP+VD  GKLVGIIT  ++ +A
Sbjct: 2   LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKA 56

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 59.8 bits (146), Expect = 8e-12
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T+ + MT    +        VD     + +  I+G PV+DD  ++VG+V+  D+ 
Sbjct: 63  TIEEIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS 115

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score =  116 bits (292), Expect = 3e-33
 Identities = 29/155 (18%), Positives = 64/155 (41%), Gaps = 31/155 (20%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D M T  ++  +  T ++++ L   VE       V+ +    VG+V+ +D+L     
Sbjct: 2   RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVL----- 53

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                             +   E   L        V ++M    V +     +++AA  +
Sbjct: 54  ------------------EAIAEGDDLAEVK----VWEVMERDLVTISPRATIKEAAEKM 91

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
           ++    RL V + D +++G+I+  +++RA +  ++
Sbjct: 92  VKNVVWRLLVEE-DDEIIGVISATDILRAKMAKRY 125

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score =  118 bits (297), Expect = 5e-33
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 35/162 (21%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+  DLL LD  
Sbjct: 14  KVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD-- 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                              V + ++     V E  N+  A  L 
Sbjct: 70  -------------------------------LDSSVFNKVSLPDFFVHEEDNITHALLLF 98

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ 245
           LE +   LPVVD + +L G ++  + + A ++       G +
Sbjct: 99  LEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALAMDVPGIR 140

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score =  114 bits (288), Expect = 2e-32
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 31/156 (19%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D++     
Sbjct: 9   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIV----- 61

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                 +        N    G+L   +   V    ++++   ++
Sbjct: 62  ---------------------IKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVM 100

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 239
            E + RR+PV+  + +LVGI+T  ++ R     +HA
Sbjct: 101 EEHQVRRVPVIS-EHRLVGIVTEADIARH--LPEHA 133

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score =  114 bits (287), Expect = 2e-32
 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 33/150 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V ++M T  ++  V     +++  +++ EK I    V+D + K VG++++ D+      
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDI------ 55

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARL 202
                                  V+ +    + +    + MT + + +RE + +  A  L
Sbjct: 56  -----------------------VKAIGKGKSLETKAEEFMTASLITIREDSPITGALAL 92

Query: 203 LLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           + +   R LPVVD  G L GII+  ++ RA
Sbjct: 93  MRQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  116 bits (291), Expect = 2e-31
 Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 19/151 (12%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
              + D++T   ++ V  P   + +    +V       PV+ +  +LVG+++  D + L 
Sbjct: 147 NEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEG-RLVGIITSTDFIKL- 202

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                          + S W   +     + +     + ++M    +  +E   L+  A 
Sbjct: 203 ---------------LGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAE 247

Query: 202 LLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           +++      LPVVD + ++ GIIT  +V++ 
Sbjct: 248 IMVTNDIGALPVVDENLRIKGIITEKDVLKY 278

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  107 bits (270), Expect = 2e-28
 Identities = 28/149 (18%), Positives = 64/149 (42%), Gaps = 16/149 (10%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSI 143
           +      K  +  V PTTT+ +AL  + E +    PV++  + K+VG+++  D++     
Sbjct: 6   MKIAQNKK--IVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDF--- 60

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                 + ++       + V ++M    + ++E  ++++A    
Sbjct: 61  ----------MGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETF 110

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRA 232
           L       P+V+ + +L+ +IT  +V+RA
Sbjct: 111 LTKNVGGAPIVNDENQLISLITERDVIRA 139

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVRA 232
           +++        V V  TT +  A   + E KYRRLPVV+A + K+VGIIT  ++V  
Sbjct: 4   RVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDF 60

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  113 bits (284), Expect = 3e-30
 Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 23/160 (14%)

Query: 77  APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136
                ++ V  FM+TK  +  +     +D+A+++++ +     PVIDDD K+VG+V+  +
Sbjct: 150 KDLDEIFPVKVFMSTK--VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVN 207

Query: 137 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 196
            +         +       ++D  +              GK+V D+M    V + E  ++
Sbjct: 208 AI---------KQLAKAVDKLDPDYFY------------GKVVKDVMVTNLVTIDELASV 246

Query: 197 EDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236
             AA  ++  +   L +++ D  + GIIT  +++ A   I
Sbjct: 247 NRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI 286

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  107 bits (269), Expect = 4e-28
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 21/155 (13%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +   M       ++     +  A + + E  I    V ++  K+ GL++  DLL     
Sbjct: 21  NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLL----- 71

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                           ++   +  Q  L   +   + D MTP PV V  T++   A  ++
Sbjct: 72  ------------STVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIM 119

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
           +   +  LPVVD + K VGI+T    +     +  
Sbjct: 120 VTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDE 154

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  113 bits (284), Expect = 5e-30
 Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 22/202 (10%)

Query: 35  CLLLSRPGCRVFSVLATSSDRVSA-LRRSSAVFASGTLTANSAAPSSGVYTVGDFMT-TK 92
              L R       V+   S      L     +            P     ++ +    T 
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTY 200

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
             + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L        A   
Sbjct: 201 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL--------AAEK 252

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
            +  +D +     + +                   +       LE     L+E +  RL 
Sbjct: 253 TYNNLDVSVTKALQHR------------SHYFEGVLKCYLHETLEAIINRLVEAEVHRLV 300

Query: 213 VVDADGKLVGIITRGNVVRAAL 234
           VVD    + GI++  ++++A +
Sbjct: 301 VVDEHDVVKGIVSLSDILQALV 322

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  103 bits (257), Expect = 3e-26
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 14/152 (9%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALD 141
           +   D + T  +L V   +  V +A   LV   +   P+ D      VG+++  D + + 
Sbjct: 35  HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINI- 93

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                      +     S      E+++   +T  ++         V +    +L DA  
Sbjct: 94  -----------LHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVS 142

Query: 202 LLLETKYRRLPVVDAD-GKLVGIITRGNVVRA 232
            L+  K  RLPV+D + G  + I+T   +++ 
Sbjct: 143 SLIRNKIHRLPVIDPESGNTLYILTHKRILKF 174

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  108 bits (271), Expect = 5e-30
 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 30/152 (19%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +  +MT K  L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D+      
Sbjct: 8   PIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI------ 59

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                    + P +                     V  +MT   +     T L +  R +
Sbjct: 60  -----IRRVIVPGLPYDIP----------------VERIMTRNLITANVNTPLGEVLRKM 98

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
            E + + + + + +GK+VGI T  +++ A+ +
Sbjct: 99  AEHRIKHILIEE-EGKIVGIFTLSDLLEASRR 129

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score =  107 bits (268), Expect = 3e-29
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 35/159 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V DF +      V+    +V +A+  +  + +    V+D D  LVG++S  DLL     
Sbjct: 18  QVKDFQSIP---VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL----- 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAAR 201
                             +     Q+L S      V  +MT  P   V R    + D A+
Sbjct: 70  ------------------RASIGQQELTSVP----VHIIMTRMPNITVCRREDYVMDIAK 107

Query: 202 LLLETKYRRLPVVDADG---KLVGIITRGNVVRAALQIK 237
            L+E +   LPV+       +++G +T+ N+ +  + + 
Sbjct: 108 HLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLS 146

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 163 TFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLV 221
           T     +LL+    K+ V D  +  PVV+ E  ++ DA   +       L VVD D  LV
Sbjct: 2   TGKTGTQLLADKLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLV 60

Query: 222 GIITRGNVVRAALQIKHATEM 242
           G+++R +++RA++  +  T +
Sbjct: 61  GVLSRKDLLRASIGQQELTSV 81

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  111 bits (278), Expect = 3e-29
 Identities = 25/146 (17%), Positives = 60/146 (41%), Gaps = 20/146 (13%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR 148
           + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L        
Sbjct: 194 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL-------- 245

Query: 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 208
               ++ ++  +       +                       +   L      + + + 
Sbjct: 246 IKGGIYNDLSLSVGEALMRRSD------------DFEGVYTCTKNDKLSTIMDNIRKARV 293

Query: 209 RRLPVVDADGKLVGIITRGNVVRAAL 234
            R  VVD  G+LVG++T  ++++  L
Sbjct: 294 HRFFVVDDVGRLVGVLTLSDILKYIL 319

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 75.0 bits (184), Expect = 4e-16
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 26/138 (18%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALDSISGSGR 148
           +   + P+  + EA   ++E R    P+ID D       +V +++ Y +L          
Sbjct: 123 DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILK--------- 173

Query: 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 208
                       +   N  +    K     +  +        + TT + D  ++L + + 
Sbjct: 174 ------------FVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRV 221

Query: 209 RRLPVVDADGKLVGIITR 226
             +P++D +G L+ +   
Sbjct: 222 SSVPIIDENGYLINVYEA 239

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 73.5 bits (180), Expect = 2e-15
 Identities = 25/156 (16%), Positives = 61/156 (39%), Gaps = 17/156 (10%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALD 141
            T  D +     L V+  +  V ++L +L++  I   P+ D    +  GL++  D + + 
Sbjct: 30  KTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVI 89

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
               S      +  +            +L    + +    +       +  +  L +A  
Sbjct: 90  QYYFSNPDKFELVDK-----------LQLDGLKDIERALGVDQLDTASIHPSRPLFEACL 138

Query: 202 LLLETKYRRLPVVDAD-----GKLVGIITRGNVVRA 232
            +LE++  R+P++D D       +V ++T+  +++ 
Sbjct: 139 KMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKF 174

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  103 bits (260), Expect = 2e-28
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 29/157 (18%)

Query: 80  SGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             + TV   +  K   +  + P  +V  A++ +    I    V+ D+ KLVG++++ D  
Sbjct: 3   GHMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDFS 61

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
                    +                              V ++MT     V      ED
Sbjct: 62  --RKSYLLDKPVKDT------------------------QVKEIMTRQVAYVDLNNTNED 95

Query: 199 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
              L+ E + R LPV+D DGK++G+++ G++V+ A+ 
Sbjct: 96  CMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 131

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  102 bits (257), Expect = 1e-27
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 28/153 (18%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
            V D +  K  ++  V P  ++ EA   L   +I    V D D  ++G+ ++ DL+   +
Sbjct: 25  FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK--A 82

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
           ++G G A                             V   MT   V  +  +  +    +
Sbjct: 83  VAGQGAASLQQ------------------------SVSVAMTKNVVRCQHNSTTDQLMEI 118

Query: 203 LLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
           +   ++R +PV + +G+L GII+ G+VV+A + 
Sbjct: 119 MTGGRFRHVPVEE-NGRLAGIISIGDVVKARIG 150

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score =  102 bits (257), Expect = 1e-26
 Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 35/151 (23%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V   MT       +    T + ALE+  + ++  FPV++ + KLVG++S   +L      
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL------ 54

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
                                         + + +  L+     VV+E   L+ AA+L+L
Sbjct: 55  ---------------------------VNPDEEQLAMLVKRDVPVVKENDTLKKAAKLML 87

Query: 205 ETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
           E  YRR+ VVD+ GK VGI+T G+++R    
Sbjct: 88  EYDYRRVVVVDSKGKPVGILTVGDIIRRYFA 118

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 97.6 bits (243), Expect = 2e-24
 Identities = 32/153 (20%), Positives = 66/153 (43%), Gaps = 7/153 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL----A 139
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + DLL     
Sbjct: 127 EIEPYYQRY--VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 184

Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
           +  +  +  A +S    +  +  T    +  L   N   V ++MT   +V      + + 
Sbjct: 185 VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKP-VAEIMTRDVIVATPHMTVHEV 243

Query: 200 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           A  + +    +LPV+  +G L+G+I   ++++ 
Sbjct: 244 ALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV 276

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 96.4 bits (240), Expect = 5e-24
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 28/149 (18%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           +   +    ++ VVK   T+ +A ++++E       V+D   K VG+++  D++      
Sbjct: 62  LAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR---- 115

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
                                       K  G  +         +V E T L+ A + LL
Sbjct: 116 ----------------------YFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALL 153

Query: 205 ETKYRRLPVVDADGKLVGIITRGNVVRAA 233
            +    LPVVD++G LVGI+   +++R +
Sbjct: 154 LSNSMALPVVDSEGNLVGIVDETDLLRDS 182

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 63.7 bits (155), Expect = 3e-12
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
           V  +MT  PV +        A  L  + K R  PVV+ +GKLVGII+   ++    + + 
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQL 62

Query: 239 ATEM 242
           A  +
Sbjct: 63  AMLV 66

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 99.7 bits (249), Expect = 2e-26
 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 32/163 (19%)

Query: 77  APSSGVYTVGDFMTTKE----ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            P S   TV   +  K      ++ V     V +A++++ EK I    V+D D  + G+V
Sbjct: 1   GPGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIV 59

Query: 133 SDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRE 192
           ++ D      +    R+  +                          V ++MT     V  
Sbjct: 60  TERDYAR--KVVLQERSSKAT------------------------RVEEIMTAKVRYVEP 93

Query: 193 TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
           + + ++   L+ E + R LPV+D  GKL+G+I+ G++V++ + 
Sbjct: 94  SQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIA 135

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 98.6 bits (246), Expect = 2e-26
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 31/149 (20%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T      T  +  V     +  +A   L        PV+D + + +G+V    LL     
Sbjct: 6   TFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKG 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
             + +                            + +G+ +       R    L D    +
Sbjct: 63  WPTVK----------------------------EKLGEELLETVRSYRPGEQLFDNLISV 94

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRA 232
              K   +P+ D DG+  G+++R  ++  
Sbjct: 95  AAAKCSVVPLADEDGRYEGVVSRKRILGF 123

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 48.6 bits (116), Expect = 8e-08
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
              L      V     +  DAAR L  +     PV+D   + +G++    ++        
Sbjct: 7   FSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLD-GERYLGMVHLSRLLEGRKGWPT 65

Query: 239 ATE 241
             E
Sbjct: 66  VKE 68

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 95.8 bits (238), Expect = 5e-25
 Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 22/151 (14%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALD 141
            V  FM     +  +   T ++E ++++    +T +P+++      LVG+V    L+   
Sbjct: 14  RVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQAL 71

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                 RA        D   +                      P  + +   T L  A  
Sbjct: 72  QAEPPSRAPGHQQCLQDILARGCP-----------------TEPVTLTLFSETTLHQAQN 114

Query: 202 LLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           L      + L V    G+ VG ++   + +A
Sbjct: 115 LFKLLNLQSLFVTS-RGRAVGCVSWVEMKKA 144

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA--DGKLVGIITRGNVVRAALQI 236
           V   M  +   + + T LE+  +++  T     P+V++     LVGI+ R  +V+A    
Sbjct: 15  VEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAE 74

Query: 237 KHATEMGAQ 245
             +   G Q
Sbjct: 75  PPSRAPGHQ 83

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 90.8 bits (226), Expect = 3e-23
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 35/158 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALD 141
              + +        +  T T+ E    L + R+    +   D+  + V +VS+ D+    
Sbjct: 6   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDI---- 59

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN-GKMVGDLMTPAPVVVRETTNLEDAA 200
                                    ++ +  + +       +   +P+ V +T  +  AA
Sbjct: 60  -------------------------LRAVAQRLDLDGPAMPIAN-SPITVLDTDPVHVAA 93

Query: 201 RLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
             +     R + VV+ +G+LVG+++  ++      +  
Sbjct: 94  EKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLE 131

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 89.6 bits (222), Expect = 3e-21
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 20/142 (14%)

Query: 91  TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 150
           T   L      T V + +++L EK I+  P+++ +  L+ +    D++ L          
Sbjct: 191 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL--------IQ 242

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR 210
           +  +  +D +      V + L K      G          R T  L+     +  ++  R
Sbjct: 243 DGDYSNLDLS------VGEALLKRPANFDG------VHTCRATDRLDGIFDAIKHSRVHR 290

Query: 211 LPVVDADGKLVGIITRGNVVRA 232
           L VVD + KL GI++  +++  
Sbjct: 291 LFVVDENLKLEGILSLADILNY 312

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 65.7 bits (160), Expect = 9e-13
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 14/154 (9%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDS 142
           T  D + T   L V   T  V  +L +L    I   P+ D +  K  GL++  D + +  
Sbjct: 23  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK 82

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
                 +      E+D          +LL     +     + P  + V    +L DA   
Sbjct: 83  YYYQSSSFPEAIAEIDK--------FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLA 134

Query: 203 LLETKYRRLPVVDAD-----GKLVGIITRGNVVR 231
           + +++ RR+P++D D       +V ++T+  +++
Sbjct: 135 MSKSRARRIPLIDVDGETGSEMIVSVLTQYRILK 168

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 26/138 (18%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALDSISGSGR 148
           E   V P  ++ +A   + + R    P+ID D       +V +++ Y +L   S++    
Sbjct: 118 ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKET 177

Query: 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 208
           A                    L        +              T + D  ++L E   
Sbjct: 178 A---------------MLRVPL------NQMTIGTWSNLATASMETKVYDVIKMLAEKNI 216

Query: 209 RRLPVVDADGKLVGIITR 226
             +P+V+++G L+ +   
Sbjct: 217 SAVPIVNSEGTLLNVYES 234

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 82.9 bits (206), Expect = 2e-18
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 35/128 (27%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           + P  TVD AL ++ +  I G PV++D+ K+VG+++  D+           A        
Sbjct: 106 IAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDI----------AAREG----- 149

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
                              K+V +LMT   + V E+  +E+A ++++E +  RLPVVD  
Sbjct: 150 -------------------KLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDER 190

Query: 218 GKLVGIIT 225
           GKLVG+IT
Sbjct: 191 GKLVGLIT 198

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 48.3 bits (116), Expect = 8e-07
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KLVGL+
Sbjct: 152 VKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI 197

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 79.8 bits (198), Expect = 2e-17
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 34/130 (26%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V+P  T+ + +E+       GFPV+ ++ +LVG+++  D+          R     F   
Sbjct: 102 VRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV----------R-----F-VT 145

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVD 215
           D T                  V  +MTP      V+E     +    + + +  ++ VV+
Sbjct: 146 DLTKS----------------VAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN 189

Query: 216 ADGKLVGIIT 225
            + +L G+IT
Sbjct: 190 DEFQLKGMIT 199

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V   MT KE L  VK   T  E  E + + R+    V++D+++L G++
Sbjct: 151 VAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMI 198

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 42.5 bits (101), Expect = 8e-05
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 225
           +V       PV VR    + D   L     +   PVV  + +LVGIIT
Sbjct: 95  VVTH-----PVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIIT 137

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 79.5 bits (197), Expect = 3e-17
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 35/135 (25%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGRADNSM 153
           V+ P+ TV + LE  +    +G P+ +      KLVG+V+  D+                
Sbjct: 120 VLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDI--------------DF 165

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRL 211
             E D T                  + ++MTP    VV      L++A  +L  +K  +L
Sbjct: 166 LAEKDHTTL----------------LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKL 209

Query: 212 PVVDADGKLVGIITR 226
           P+V+   +LV II R
Sbjct: 210 PIVNDCDELVAIIAR 224

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 54.5 bits (132), Expect = 8e-09
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + + MT + EL V     T+ EA EIL   +    P+++D  +LV +++  DL
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDL 227

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 79.1 bits (196), Expect = 4e-17
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 34/130 (26%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P  TV EA++++ E +I G PV+D++ +LVGL+++ D+          R     F E 
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV----------R-----F-EK 151

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVD 215
           + + K                + DLMTP    +V     +LE A  +L + +  +LP+V 
Sbjct: 152 NLSKK----------------IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS 195

Query: 216 ADGKLVGIIT 225
            D KLVG+IT
Sbjct: 196 KDNKLVGLIT 205

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT +E+L V  P  ++++A EIL + RI   P++  D KLVGL+
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLI 204

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 225
           ++ D     P+ V     +++A  L+ E K   LPVVD +G+LVG++T
Sbjct: 101 IIYD-----PITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLT 143

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 77.6 bits (192), Expect = 1e-16
 Identities = 33/134 (24%), Positives = 46/134 (34%), Gaps = 36/134 (26%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGRADNSMF 154
           VKP  T  + L I          V DD      L+GLV+  D                  
Sbjct: 110 VKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDY----------P-----I 154

Query: 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLP 212
               +  K                V D+MTP    V   + T L +A +++ E K   LP
Sbjct: 155 DLTQTETK----------------VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALP 198

Query: 213 VVDADGKLVGIITR 226
           ++D D  L  I+ R
Sbjct: 199 IIDDDQHLRYIVFR 212

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V D MT   +L      T + EA +I+ EK++   P+IDDD  L  +V
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIV 210

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 76.0 bits (188), Expect = 4e-16
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 35/131 (26%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
           + P   V +A  ++ + RI+G PV++  D+ KLVG++++ D+          R     F 
Sbjct: 126 LTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM----------R-----F- 169

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP-VVVRETTNLEDAARLLLETKYRRLPVV 214
             D + K                + D+MT    +     T L +A ++L + K  +LP+V
Sbjct: 170 IQDYSIK----------------ISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLV 213

Query: 215 DADGKLVGIIT 225
           D +G L G+IT
Sbjct: 214 DNNGVLQGLIT 224

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 49.0 bits (118), Expect = 4e-07
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT KE+L      TT+ EA +IL + +I   P++D++  L GL+
Sbjct: 177 ISDVMT-KEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLI 223

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 75.6 bits (187), Expect = 6e-16
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 35/131 (26%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
           + P   V EA E++   RI+G P+++   + KLVG++++ D+          R     F 
Sbjct: 103 LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM----------R-----F- 146

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP-VVVRETTNLEDAARLLLETKYRRLPVV 214
             D                    + + MT    V     T+LE A R+L E +  +LP+V
Sbjct: 147 ISDYNAP----------------ISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLV 190

Query: 215 DADGKLVGIIT 225
           D  G+L G+IT
Sbjct: 191 DNSGRLSGLIT 201

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 49.0 bits (118), Expect = 5e-07
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + + MT  E L      T ++ A  IL E RI   P++D+  +L GL+
Sbjct: 154 ISEHMT-SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLI 200

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 22/176 (12%)

Query: 78  PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYD 136
             S   T  + M   E    + P +       IL +      FPVID +  L+G +S  +
Sbjct: 448 DRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKE 507

Query: 137 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL-----------------LSKTNGKMV 179
           ++           +              +  + +                  + T  +  
Sbjct: 508 IVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPT 567

Query: 180 GDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
             L      +P+VV   + +     L +      + V +  GKLVGI+ R +V   
Sbjct: 568 SSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE-RGKLVGIVEREDVAYG 622

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 42/148 (28%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLA 139
             +G +     ++ V+    TV +A                ++D+  K +G V       
Sbjct: 54  NEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVR------ 105

Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
                                         +      + +  L++     +   T L DA
Sbjct: 106 ---------------------------RYDIFKHEPHEPLISLLSEDSRALTANTTLLDA 138

Query: 200 ARLLLETKYRRL--PVVDADGKLVGIIT 225
           A  +     R +  PV+D  G+L+G +T
Sbjct: 139 AEAI--EHSREIELPVIDDAGELIGRVT 164

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 66.5 bits (163), Expect = 4e-13
 Identities = 39/152 (25%), Positives = 58/152 (38%), Gaps = 48/152 (31%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-------VIDDDWKLVGLVSDY 135
              G  MT   E   V+   TV+E L  L  +R            V+D+  +L G++S  
Sbjct: 135 DEAGGLMTP--EYVAVREGMTVEEVLRFL--RRAAPDAETIYYIYVVDEKGRLKGVLS-- 188

Query: 136 DLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTN 195
                                          ++ L+       V ++M P  V VR  T+
Sbjct: 189 -------------------------------LRDLIVADPRTRVAEIMNPKVVYVRTDTD 217

Query: 196 LEDAARLLLETKYRRL--PVVDADGKLVGIIT 225
            E+ ARL+    Y     PVVD +G+LVGI+T
Sbjct: 218 QEEVARLM--ADYDFTVLPVVDEEGRLVGIVT 247

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 44/149 (29%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
             G  MT   E   V+   TV+E L  L         I    V+D+  +L G++S     
Sbjct: 156 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLS----- 208

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
                                       ++ L+       V ++M P  V VR  T+ E+
Sbjct: 209 ----------------------------LRDLIVADPRTRVAEIMNPKVVYVRTDTDQEE 240

Query: 199 AARLLLETKYRRL--PVVDADGKLVGIIT 225
            ARL+    Y     PVVD +G+LVGI+T
Sbjct: 241 VARLM--ADYDFTVLPVVDEEGRLVGIVT 267

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 63.3 bits (155), Expect = 6e-13
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 32/151 (21%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDLLALD 141
            V D M T +E+  V    T+ +AL  +  K   +T   + DDD  ++G+ +D DL    
Sbjct: 29  RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTA--ICDDDMNIIGIFTDGDL---- 82

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                 R             + F+    +   +    + D+MT   + +R  T   DA  
Sbjct: 83  ------R-------------RVFDTGVDMRDAS----IADVMTRGGIRIRPGTLAVDALN 119

Query: 202 LLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           L+       + V D    L+G++   +++RA
Sbjct: 120 LMQSRHITCVLVAD-GDHLLGVVHMHDLLRA 149

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 48/152 (31%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-------VIDDDWKLVGLVSDY 135
            T G  MTT  E   +    TV  A+ +L  K             V+D +  LVG++S  
Sbjct: 137 ETAGAIMTT--EFVSIVANQTVRSAMYVL--KNQADMAETIYYVYVVDQENHLVGVIS-- 190

Query: 136 DLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTN 195
                                          ++ L+   +  ++ D++    + V    +
Sbjct: 191 -------------------------------LRDLIVNDDDTLIADILNERVISVHVGDD 219

Query: 196 LEDAARLLLETKYRRL--PVVDADGKLVGIIT 225
            ED A+ +    Y  L  PV D D  L+GI+T
Sbjct: 220 QEDVAQTI--RDYDFLAVPVTDYDDHLLGIVT 249

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 57.6 bits (138), Expect = 3e-10
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
            V V     +ED    + ET+Y   PV+D + K+VG I R +++  
Sbjct: 196 LVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST 241

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 57.2 bits (137), Expect = 5e-10
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           D++ TK+ L  V     V++    + E R + +PVID++ K+VG ++ + L+
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 56.5 bits (135), Expect = 7e-10
 Identities = 12/64 (18%), Positives = 29/64 (45%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
           V DL       +    +L+ A  ++ +   + +PV D +  L+G+++  N+    + I  
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 239 ATEM 242
           +  +
Sbjct: 69  SNIL 72

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYDLLALD 141
            V D      ++  + P  ++  A  I+ +K +   PV D +  L+G++  S+     +D
Sbjct: 8   KVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 65

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEV--QKLLSKTNGKMVGDLMTPAPVVVRE------- 192
               +  A ++   +      +       +      GK+V   M    +           
Sbjct: 66  IWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAI 125

Query: 193 TTNLEDAARLLLETKYRRLPVV 214
             +  +    L+E K   L V 
Sbjct: 126 AGDRAEIQAELIELKVSLLIVT 147

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 34/140 (24%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRAD 150
                ++K   TV EA+ ++ + R+   PV+D DD  ++G+V    L  +  I  S    
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETL--ITQIV-SMNRQ 448

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR 210
            S                              +    + + E+  L   AR+L       
Sbjct: 449 QS------------------------DPAIKALNKRVIRLNESEILGKLARVLEVDPS-- 482

Query: 211 LPVVDADG----KLVGIITR 226
           + ++  +     +L  + T+
Sbjct: 483 VLILGKNPAGKVELKALATK 502

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 183 MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           +  +P  + E T+L+    L       R  V    GKLVG++    +  A
Sbjct: 195 IDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVGVVALAEIQAA 243

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
           VGD+M      +  T+   D   +L +TK +  P VD           G++ R  ++
Sbjct: 15  VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTN---TLLGSIDRTEVE 68

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 79  SSGVY--TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK--LVGLVSD 134
           S+  Y   VGD M    ++  +  T+T  + L +L + ++  FP +D      L+G +  
Sbjct: 7   SANKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDR 64

Query: 135 YDLLALDSISGSGRADNSMFPEVDS 159
            ++  L     S             
Sbjct: 65  TEVEGLLQRRISAYRRQPAAAAEAD 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.91
4esy_A	170	CBS domain containing membrane protein; structural	99.9
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.89
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.89
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.89
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.89
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.89
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.88
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.88
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.88
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.87
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.87
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.87
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.87
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.86
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.86
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.86
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.86
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.85
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.85
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.85
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.85
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.85
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.85
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.85
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.84
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.84
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.84
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.84
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.83
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.83
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.83
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.82
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.82
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.82
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.82
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.81
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.81
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.81
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.81
3ddj_A	296	CBS domain-containing protein; structural genomics	99.81
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.81
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.81
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.8
3ddj_A	296	CBS domain-containing protein; structural genomics	99.79
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.78
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.78
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.77
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.76
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.75
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.75
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.72
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.72
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.72
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.71
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.69
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.68
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.66
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.64
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.63
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.61
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.6
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.6
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.57
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.55
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.47
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.47
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.41
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.27
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.19
4esy_A	170	CBS domain containing membrane protein; structural	99.02
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.96
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.93
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.9
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.9
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.88
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.87
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.85
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.85
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.82
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.81
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.79
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.78
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.78
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.77
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.76
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.76
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.74
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.74
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.73
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.73
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.73
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.73
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.72
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.71
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.71
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.71
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.7
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.7
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.7
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.69
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.68
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.67
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.66
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.66
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.66
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.65
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.64
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.63
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.62
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.62
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.61
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.61
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.6
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.53
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.5
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.5
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.38
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.36
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.31
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.26
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.19
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.16
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.05
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.99
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.98
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.97
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.9

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.91  E-value=3.5e-24  Score=167.84  Aligned_cols=159  Identities=77%  Similarity=1.218  Sum_probs=128.6

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (245)
                      .++|+++|++..+++++.+++++.+|++.|.+++++.+||+|++|+++|+|+..||+++....+.......+++...+.|
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CC
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            45899999875568999999999999999999999999999999999999999999975433333333445566677889


Q ss_pred             cchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT  240 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~  240 (245)
                      ..|.+++.........++.++|.++++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+||++++.......
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~~~  161 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNA  161 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHHHTC
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHhhhh
Confidence            9998888877777888999999999999999999999999999999999999998999999999999999998876543

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.90  E-value=4.7e-24  Score=166.32  Aligned_cols=151  Identities=24%  Similarity=0.306  Sum_probs=118.2

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (245)
                      +..++|+++|++  +++++.+++++.+|++.|.+++++++||+|++|+++|+||..|++++........     ......
T Consensus        15 l~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~-----~~~~~~   87 (170)
T 4esy_A           15 IRQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYE-----ASEILS   87 (170)
T ss_dssp             HHTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHH-----HHHHHT
T ss_pred             HcCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccc-----hhhhhh
Confidence            356799999998  8999999999999999999999999999999999999999999987531100000     000000


Q ss_pred             cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  238 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~  238 (245)
                      ..................++.++|+++++++.+++++.+|+++|.+++++++||+| +|+++|+||.+||++++.....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~~~~  165 (170)
T 4esy_A           88 RAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLLEES  165 (170)
T ss_dssp             TTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCCC--
T ss_pred             hccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHhccC
Confidence            00011122333345567899999999999999999999999999999999999999 6999999999999998866544

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.89  E-value=9.2e-23  Score=155.20  Aligned_cols=148  Identities=86%  Similarity=1.275  Sum_probs=116.7

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ..++|+++|++..+++++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+..+..              ....
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~--------------~~~~   68 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDS--------------GDST   68 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC------------------C
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhc--------------ccCc
Confidence            35689999987556899999999999999999999999999999899999999999986521              1122


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT  240 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~  240 (245)
                      |..+.............++.++|.++++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+||++++.+.....
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~~~~  148 (152)
T 4gqw_A           69 WKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSG  148 (152)
T ss_dssp             CHHHHHHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC-----
T ss_pred             ccchHHHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhccccc
Confidence            33333333333334567899999998999999999999999999999999999998899999999999999998876654


Q ss_pred             hh
Q 025984          241 EM  242 (245)
Q Consensus       241 ~~  242 (245)
                      .+
T Consensus       149 ~~  150 (152)
T 4gqw_A          149 DR  150 (152)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.89  E-value=3.5e-22  Score=151.99  Aligned_cols=127  Identities=17%  Similarity=0.288  Sum_probs=114.2

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      .+...+|+++|++..++.++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|+..+..               
T Consensus        19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~---------------   83 (148)
T 3lv9_A           19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI---------------   83 (148)
T ss_dssp             GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH---------------
T ss_pred             ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh---------------
Confidence            45678999999976679999999999999999999999999999987 89999999999987531               


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                     .....++.++| ++++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++...
T Consensus        84 ---------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A           84 ---------------NENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             ---------------HHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred             ---------------cCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence                           11267899999 7799999999999999999999999999999889999999999999998753

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.89  E-value=3.1e-22  Score=148.90  Aligned_cols=124  Identities=22%  Similarity=0.361  Sum_probs=109.4

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (245)
                      ...+|+++|++..+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+..                 
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----------------   65 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-----------------   65 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----------------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----------------
Confidence            456899999954478999999999999999999999999999985 89999999999987531                 


Q ss_pred             cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                    ....++.++|.+ +.++.+++++.+++++|.+++.+.+||+|++|+++|+||.+|+++++...
T Consensus        66 --------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ge  127 (129)
T 3jtf_A           66 --------------EPALDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGD  127 (129)
T ss_dssp             --------------CTTSCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHT
T ss_pred             --------------cCCcCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence                          125678999976 88999999999999999999999999999889999999999999998753

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.89  E-value=9.4e-23  Score=151.88  Aligned_cols=126  Identities=20%  Similarity=0.292  Sum_probs=108.6

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      +...+|+++|++..+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+...               
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~---------------   67 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS---------------   67 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT---------------
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc---------------
Confidence            4678999999974467799999999999999999999999999987 899999999999976321               


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                    .....++.++|. ++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++..
T Consensus        68 --------------~~~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           68 --------------GSGQKQLGAVMR-PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             --------------TTTTSBHHHHSE-ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             --------------CCCcCCHHHHhc-CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence                          112578899995 48899999999999999999999999999988999999999999999864

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.89  E-value=1.6e-22  Score=150.01  Aligned_cols=124  Identities=23%  Similarity=0.402  Sum_probs=108.0

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      +.+|+++|++..++.++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|+.++...                 
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-----------------   64 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence            46899999973359999999999999999999999999999987 899999999999976321                 


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                  .....++.++|.+ +.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++..
T Consensus        65 ------------~~~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           65 ------------DAEAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             ------------TCCCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred             ------------cCCCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence                        1135788999966 7899999999999999999999999999989999999999999998753

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.88  E-value=5.6e-22  Score=154.88  Aligned_cols=128  Identities=19%  Similarity=0.223  Sum_probs=111.2

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      .+...+|+++|++..+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+..               
T Consensus        38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~---------------  102 (172)
T 3lhh_A           38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI---------------  102 (172)
T ss_dssp             -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH---------------
T ss_pred             ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh---------------
Confidence            56778999999954378999999999999999999999999999987 89999999999997631               


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                     .....++.++| ++++++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++++....
T Consensus       103 ---------------~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~  166 (172)
T 3lhh_A          103 ---------------AGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEF  166 (172)
T ss_dssp             ---------------TTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTC
T ss_pred             ---------------hcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCC
Confidence                           11257899999 88999999999999999999999999999998899999999999999988643

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.88  E-value=1e-22  Score=156.84  Aligned_cols=131  Identities=25%  Similarity=0.341  Sum_probs=111.7

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      .+++++|+|+.+++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++.+......                
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~----------------   78 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL----------------   78 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC----------------
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccc----------------
Confidence            3788999998899999999999999999999999999999998999999999999875321110                


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  238 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~  238 (245)
                             ........++.++|.+++.++.+++++.+++++|.+.+  .+||||++|+++|+||.+|+++++....+
T Consensus        79 -------~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~~  145 (156)
T 3k6e_A           79 -------SQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLH  145 (156)
T ss_dssp             -------CHHHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHSC
T ss_pred             -------ccccccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHhc
Confidence                   00122467899999999999999999999999998775  59999999999999999999999976543

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.88  E-value=2.1e-22  Score=151.21  Aligned_cols=127  Identities=23%  Similarity=0.318  Sum_probs=108.8

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ..+|+++|++..++.++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+....                
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~----------------   65 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKA----------------   65 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS----------------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc----------------
Confidence            46899999954478999999999999999999999999999987 8999999999999763210                


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                  .....++.++|.+ ++++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++++....
T Consensus        66 ------------~~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~  129 (136)
T 3lfr_A           66 ------------DGDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDI  129 (136)
T ss_dssp             ------------SGGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC----
T ss_pred             ------------cCCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence                        1135689999977 899999999999999999999999999998999999999999999887644

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.87  E-value=6.4e-22  Score=145.30  Aligned_cols=120  Identities=24%  Similarity=0.403  Sum_probs=109.2

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      ++|+++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|+..+..                    
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~--------------------   58 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA--------------------   58 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH--------------------
T ss_pred             CchHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH--------------------
Confidence            368899998  8999999999999999999999999999999999999999999987531                    


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                 ....++.++|.+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++.+
T Consensus        59 -----------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           59 -----------QNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             -----------TTCCBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             -----------hcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence                       12458999999999999999999999999999999999999988999999999999998765

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.87  E-value=3.6e-22  Score=148.89  Aligned_cols=126  Identities=14%  Similarity=0.115  Sum_probs=107.7

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC-CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~-~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (245)
                      ++|+++|++..+++++++++++.++++.|.+++++.+||+++ +|+++|+|+.+|++++.....                
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~----------------   65 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK----------------   65 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSS----------------
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccC----------------
Confidence            578999986447899999999999999999999999999975 589999999999997642100                


Q ss_pred             cchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                 .....++.++| ++++++.+++++.+++++|.+++.+.+||+|++|+++|+||.+|+++++...
T Consensus        66 -----------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A           66 -----------EFTKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             -----------CCCHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC-
T ss_pred             -----------ccchhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCC
Confidence                       00124678888 5688999999999999999999999999999889999999999999998753

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.87  E-value=9.2e-22  Score=145.99  Aligned_cols=125  Identities=19%  Similarity=0.204  Sum_probs=111.5

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ..++++++|.+  +++++++++++.++.+.|.+++++.+||+|+ |+++|+|+.+|+.++.....               
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~---------------   64 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWP---------------   64 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSC---------------
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCC---------------
Confidence            46799999998  8999999999999999999999999999998 99999999999997532100               


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                   ....++.++|.+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++.+.
T Consensus        65 -------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~  127 (128)
T 3gby_A           65 -------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER  127 (128)
T ss_dssp             -------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred             -------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence                         013679999999899999999999999999999999999999899999999999999998753

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.87  E-value=2.2e-21  Score=144.67  Aligned_cols=128  Identities=26%  Similarity=0.407  Sum_probs=112.8

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ...+|+++|.+  ++.++++++++.++.+.|.+++++.+||+| +|+++|+|+..|+..+....                
T Consensus         2 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~----------------   62 (133)
T 2ef7_A            2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKG----------------   62 (133)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT----------------
T ss_pred             CcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcC----------------
Confidence            46799999998  799999999999999999999999999999 88999999999998753210                


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHH
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA  239 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~  239 (245)
                                  .....++.++|.+++.++.+++++.++++.|.+.+.+++||+|++|+++|+||.+|+++++.+....
T Consensus        63 ------------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~~  129 (133)
T 2ef7_A           63 ------------KSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFET  129 (133)
T ss_dssp             ------------CCTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC--
T ss_pred             ------------CCcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHHH
Confidence                        0125789999988899999999999999999999999999999889999999999999998876554

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.86  E-value=9.8e-22  Score=149.65  Aligned_cols=138  Identities=21%  Similarity=0.288  Sum_probs=114.8

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      .+..++|+++|++..+++++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+..+......      . .   
T Consensus        11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~------~-~---   80 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLER------I-E---   80 (150)
T ss_dssp             HHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSS------B-C---
T ss_pred             hhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcc------c-c---
Confidence            34677999999963369999999999999999999999999999999999999999999976421100      0 0   


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  238 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~  238 (245)
                                  .......++.++|.+++.++.+++++.+++++|.+.+.  +||+|++|+++|+||.+|+++++.+...
T Consensus        81 ------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~  146 (150)
T 3lqn_A           81 ------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVR  146 (150)
T ss_dssp             ------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred             ------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhH
Confidence                        01123678999999999999999999999999999986  9999988999999999999999988765


Q ss_pred             Hh
Q 025984          239 AT  240 (245)
Q Consensus       239 ~~  240 (245)
                      ..
T Consensus       147 ~~  148 (150)
T 3lqn_A          147 QH  148 (150)
T ss_dssp             --
T ss_pred             hh
Confidence            44

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.86  E-value=2.2e-21  Score=149.39  Aligned_cols=136  Identities=23%  Similarity=0.295  Sum_probs=117.1

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      .+..++|+++|++  . +++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+..+.....             
T Consensus        13 ~l~~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------   76 (159)
T 3fv6_A           13 KLKKLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ-------------   76 (159)
T ss_dssp             HHTTCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCS-------------
T ss_pred             HHhhCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccC-------------
Confidence            3467899999987  4 59999999999999999999999999998899999999999997531100             


Q ss_pred             ccccchhHHHHHHhhccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC---cEEEEEEhHHHHHHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADG---KLVGIITRGNVVRAA  233 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g---~~vGiIt~~dll~~~  233 (245)
                                    .....++.++|.+  ++.++.+++++.+++++|.+.+.+++||+|++|   +++|+||.+||++++
T Consensus        77 --------------~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l  142 (159)
T 3fv6_A           77 --------------ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKIL  142 (159)
T ss_dssp             --------------CTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHH
T ss_pred             --------------cccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHH
Confidence                          1135789999987  889999999999999999999999999999877   999999999999999


Q ss_pred             HHhHHHhhhcC
Q 025984          234 LQIKHATEMGA  244 (245)
Q Consensus       234 ~~~~~~~~~~~  244 (245)
                      .+.......+.
T Consensus       143 ~~~~~~~~~~~  153 (159)
T 3fv6_A          143 VSLSENEILLQ  153 (159)
T ss_dssp             HHHHTTCCC--
T ss_pred             HHHhhcchhhh
Confidence            98877655443

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.86  E-value=8.9e-22  Score=150.68  Aligned_cols=128  Identities=23%  Similarity=0.330  Sum_probs=111.7

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEE-cC-CCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vv-d~-~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      +...+|+++|+++.++.++++++++.+|++.|.+++++.+||+ |+ +|+++|+|+.+|++.+..               
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~---------------   81 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR---------------   81 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH---------------
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh---------------
Confidence            3567999999864478999999999999999999999999999 65 489999999999997531               


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                     .....++.++| ++++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++....
T Consensus        82 ---------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~  145 (153)
T 3oco_A           82 ---------------IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNL  145 (153)
T ss_dssp             ---------------HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC--
T ss_pred             ---------------cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccC
Confidence                           11267899999 78999999999999999999999999999998899999999999999998654


Q ss_pred             H
Q 025984          238 H  238 (245)
Q Consensus       238 ~  238 (245)
                      .
T Consensus       146 ~  146 (153)
T 3oco_A          146 R  146 (153)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.86  E-value=8.1e-21  Score=143.14  Aligned_cols=126  Identities=17%  Similarity=0.186  Sum_probs=111.1

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCC--cEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g--~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (245)
                      .++|+++|.+  ++.++++++++.++++.|.+++++.+||+|++|  +++|+|+.+|+..+....               
T Consensus         4 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~---------------   66 (141)
T 2rih_A            4 AIRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR---------------   66 (141)
T ss_dssp             -CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT---------------
T ss_pred             ceEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC---------------
Confidence            4689999998  899999999999999999999999999999888  999999999998753210               


Q ss_pred             cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  238 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~  238 (245)
                                   .....++.++|.++++++.++ ++.+++++|.+.+.+++||+|++|+++|+||.+||++++.....
T Consensus        67 -------------~~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~  131 (141)
T 2rih_A           67 -------------LDLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLE  131 (141)
T ss_dssp             -------------CCTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHHHHH
T ss_pred             -------------CCCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHHHHH
Confidence                         012578999999999999999 99999999999999999999988999999999999988776543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.85  E-value=1.2e-20  Score=151.52  Aligned_cols=123  Identities=20%  Similarity=0.297  Sum_probs=112.7

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhc---CCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~---~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~  156 (245)
                      +...+|+++|++  +++++++++++.++++.|.+.   +++.+||+|++|+++|+|+.+||+...               
T Consensus        51 ~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~---------------  113 (205)
T 3kxr_A           51 YSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE---------------  113 (205)
T ss_dssp             SCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC---------------
T ss_pred             CCcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC---------------
Confidence            356699999999  899999999999999999987   789999999999999999999998531               


Q ss_pred             ccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                        ...++.++|.++++++.+++++.+++++|.+++++.+||||++|+++|+||..|+++.+.+.
T Consensus       114 ------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          114 ------------------PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREH  175 (205)
T ss_dssp             ------------------TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             ------------------CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence                              25789999999899999999999999999999999999999999999999999999998765


Q ss_pred             H
Q 025984          237 K  237 (245)
Q Consensus       237 ~  237 (245)
                      .
T Consensus       176 ~  176 (205)
T 3kxr_A          176 Y  176 (205)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.85  E-value=7.1e-21  Score=142.66  Aligned_cols=127  Identities=31%  Similarity=0.484  Sum_probs=111.5

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhh-hhhhcccCCCCCCCCCCccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl-~~~~~~~~~~~~~~~~~~~~  157 (245)
                      .+...+++++|++  ++.++++++++.++.+.|.+++.+.+||+|++|+++|+|+.+|+ ..+....             
T Consensus         4 ~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------   68 (138)
T 2p9m_A            4 TLKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDK-------------   68 (138)
T ss_dssp             -CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTC-------------
T ss_pred             ccccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhc-------------
Confidence            4567899999988  79999999999999999999999999999988999999999999 7653100             


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcC-----CCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK-----YRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~-----~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                                     .....++.++|.+++.++.+++++.++++.|.+.+     .+++||+|++|+++|+||.+|++++
T Consensus        69 ---------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~  133 (138)
T 2p9m_A           69 ---------------YTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRT  133 (138)
T ss_dssp             ---------------CCSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             ---------------ccCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHH
Confidence                           11357899999988999999999999999999999     9999999988999999999999998


Q ss_pred             HHH
Q 025984          233 ALQ  235 (245)
Q Consensus       233 ~~~  235 (245)
                      +.+
T Consensus       134 ~~~  136 (138)
T 2p9m_A          134 ISK  136 (138)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            865

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.85  E-value=4.9e-21  Score=149.84  Aligned_cols=126  Identities=18%  Similarity=0.173  Sum_probs=110.1

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      +...+|+++|++..+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+||+.+..                
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~----------------   96 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI----------------   96 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH----------------
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh----------------
Confidence            4677999999864478999999999999999999999999999986 89999999999997531                


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                    .....++. ++ ++++++.+++++.+++++|.+.+.+.+||+|++|+++|+||.+|+++++....
T Consensus        97 --------------~~~~~~v~-~~-~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i  159 (173)
T 3ocm_A           97 --------------TEGRVRRN-RL-RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEF  159 (173)
T ss_dssp             --------------HHSSCCGG-GS-BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCC
T ss_pred             --------------cCCcchhH-hc-CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcC
Confidence                          11245677 44 66899999999999999999999999999998999999999999999988543

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=4.5e-21  Score=148.58  Aligned_cols=136  Identities=24%  Similarity=0.331  Sum_probs=116.7

Q ss_pred             CCCCCcceecccccCC-CceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCc
Q 025984           77 APSSGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (245)
Q Consensus        77 ~~~~~~~~v~~im~~~-~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~  155 (245)
                      ...+..++|+++|+++ .++.++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+.++....           
T Consensus        18 ~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------   86 (165)
T 3fhm_A           18 YFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ-----------   86 (165)
T ss_dssp             CCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH-----------
T ss_pred             hHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhc-----------
Confidence            4567889999999952 2589999999999999999999999999999999999999999998753210           


Q ss_pred             cccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                     .......++.++|.++++++.+++++.+++++|.+.+.+++||+|+ |+++|+||..||++++.+
T Consensus        87 ---------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           87 ---------------GAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             ---------------GGGGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred             ---------------CCccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence                           0022468899999999999999999999999999999999999997 999999999999999876


Q ss_pred             hHHH
Q 025984          236 IKHA  239 (245)
Q Consensus       236 ~~~~  239 (245)
                      ....
T Consensus       151 ~~~~  154 (165)
T 3fhm_A          151 EIEA  154 (165)
T ss_dssp             C---
T ss_pred             HHHH
Confidence            5543

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.85  E-value=1.6e-20  Score=140.85  Aligned_cols=128  Identities=26%  Similarity=0.398  Sum_probs=112.6

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh-hhcccCCCCCCCCCCccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEV  157 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~-~~~~~~~~~~~~~~~~~~  157 (245)
                      .+...+|+++|++  +++++++++++.++.+.|.+++++.+||+|++|+++|+|+..|+.+ +.. .+            
T Consensus         3 ~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~-~~------------   67 (138)
T 2yzi_A            3 MDMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV-PG------------   67 (138)
T ss_dssp             CCTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT-TC------------
T ss_pred             chhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh-cC------------
Confidence            3567899999998  8999999999999999999999999999998899999999999973 321 00            


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                     .....++.++|.+++.++.+++++.+++++|.+.+.+++ |+|++|+++|+||.+|+++++....
T Consensus        68 ---------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~  131 (138)
T 2yzi_A           68 ---------------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRL  131 (138)
T ss_dssp             ---------------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCS
T ss_pred             ---------------CcccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHH
Confidence                           012578999999999999999999999999999999999 9998899999999999999987644

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.85  E-value=1.1e-20  Score=145.67  Aligned_cols=138  Identities=28%  Similarity=0.324  Sum_probs=113.9

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ..++|+++|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+|+..||..+......              
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~--------------   66 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ--------------   66 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC--------------
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhc--------------
Confidence            35689999998  79999999999999999999999999999988999999999999875321000              


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT  240 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~  240 (245)
                        .+   ..........++.++|.++++++.+++++.+++++|.+.+.+.+||+|+ |+++|+||..||++++.+.....
T Consensus        67 --~~---~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~~~~  140 (160)
T 2o16_A           67 --RS---AQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLLELQ  140 (160)
T ss_dssp             --------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHHHHH
T ss_pred             --cc---ccccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHhccc
Confidence              00   0000112367899999999999999999999999999999999999997 99999999999999988755443

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.85  E-value=4.6e-21  Score=147.28  Aligned_cols=120  Identities=22%  Similarity=0.347  Sum_probs=107.0

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      +...+|+++|++..+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+...               
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~---------------   99 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN---------------   99 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC---------------
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc---------------
Confidence            4677999999875568999999999999999999999999999987 499999999999975310               


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  230 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll  230 (245)
                                     ....++.++|.+ ++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|++
T Consensus       100 ---------------~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          100 ---------------PEQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             ---------------GGGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             ---------------CCcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence                           025688999976 88999999999999999999999999999899999999999986

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.84  E-value=2.5e-20  Score=139.35  Aligned_cols=123  Identities=27%  Similarity=0.457  Sum_probs=107.9

Q ss_pred             eeccccc---CCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           84 TVGDFMT---TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        84 ~v~~im~---~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      +|+++|+   +  +++++++++++.++++.|.+++++.+||+| +|+++|+|+.+|+.+.....+.              
T Consensus         7 ~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~--------------   69 (135)
T 2rc3_A            7 TVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK--------------   69 (135)
T ss_dssp             BHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS--------------
T ss_pred             eHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC--------------
Confidence            8999998   6  799999999999999999999999999999 7899999999999853211110              


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                  .....++.++|.+++.++.+++++.+++++|.+.+.+++||+| +|+++|+||.+|+++++.+.
T Consensus        70 ------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           70 ------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             ------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred             ------------CcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence                        1135789999999999999999999999999999999999999 79999999999999998754

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.84  E-value=1.9e-20  Score=137.90  Aligned_cols=123  Identities=21%  Similarity=0.339  Sum_probs=107.2

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      ++|+++|.+  ++.++++++++.++.+.|.+++.+.+||+| +|+++|+|+..|+.++....                  
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~------------------   59 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEG------------------   59 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHT------------------
T ss_pred             CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcC------------------
Confidence            368899998  899999999999999999999999999999 89999999999998653110                  


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                               ......++.++|.+++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||.+|+++++.+.
T Consensus        60 ---------~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~~  123 (125)
T 1pbj_A           60 ---------DDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMAK  123 (125)
T ss_dssp             ---------CCTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC--
T ss_pred             ---------CcccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence                     011357899999988999999999999999999999999999997 9999999999999987643

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.84  E-value=3.9e-20  Score=141.68  Aligned_cols=136  Identities=24%  Similarity=0.322  Sum_probs=112.6

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      .+...+|+++|.+..+++++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+..+.....             
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~-------------   73 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLE-------------   73 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSS-------------
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhccc-------------
Confidence            4567899999985336889999999999999999999999999998899999999999987632100             


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  238 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~  238 (245)
                       .|.        .......++.++|.+++.++.+++++.+++++|.+.+.  +||+|++|+++|+||.+|+++++.....
T Consensus        74 -~~~--------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~  142 (157)
T 2emq_A           74 -RIE--------FERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLH  142 (157)
T ss_dssp             -SBC--------GGGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTC
T ss_pred             -ccc--------hHHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhh
Confidence             000        00123678999999999999999999999999999987  9999988999999999999999887543

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.83  E-value=1.1e-20  Score=145.38  Aligned_cols=138  Identities=18%  Similarity=0.248  Sum_probs=113.6

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      .+...+|+++|.+..++.++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+..+......      + .   
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~------~-~---   79 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER------I-E---   79 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS------B-C---
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcc------c-c---
Confidence            45678999999864468999999999999999999999999999988999999999999876421100      0 0   


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  238 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~  238 (245)
                                  .......++.++|.+++.++.+++++.+++++|.+.+.  +||+|++|+++|+||.+|+++++.+...
T Consensus        80 ------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~  145 (159)
T 1yav_A           80 ------------FEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIR  145 (159)
T ss_dssp             ------------GGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred             ------------hhhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHH
Confidence                        00123678999999999999999999999999998876  9999988999999999999999887665


Q ss_pred             Hh
Q 025984          239 AT  240 (245)
Q Consensus       239 ~~  240 (245)
                      ..
T Consensus       146 ~~  147 (159)
T 1yav_A          146 SL  147 (159)
T ss_dssp             --
T ss_pred             hh
Confidence            43

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.83  E-value=4.4e-20  Score=141.72  Aligned_cols=142  Identities=25%  Similarity=0.396  Sum_probs=113.3

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCce-eEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG-FPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~-~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      .....+|+++|++  +++++++++++.+|++.|.+++++. +||+|++ +++|+|+..|++.+.....     ...... 
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~-----~~~~~~-   82 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHF-----FGFIPK-   82 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHH-----HCCCC--
T ss_pred             hhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhH-----Hhhhcc-
Confidence            4577899999998  8999999999999999999999999 9999987 9999999999987532000     000000 


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                         +.   .+..........++.++|.+ ++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+||++++.+.
T Consensus        83 ---~~---~~~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~  154 (157)
T 1o50_A           83 ---EE---LIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  154 (157)
T ss_dssp             ------------CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             ---HH---HHHHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence               00   00000011235789999999 99999999999999999999999999999889999999999999998764

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.83  E-value=6.4e-20  Score=138.22  Aligned_cols=128  Identities=22%  Similarity=0.344  Sum_probs=107.5

Q ss_pred             Ccceecc---cccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           81 GVYTVGD---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        81 ~~~~v~~---im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      .+.++++   +|.+  +++++++++++.++++.|.+++++.+||+|++|+++|+|+..|+..+.....            
T Consensus         6 ~~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------------   71 (144)
T 2nyc_A            6 LKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI------------   71 (144)
T ss_dssp             GGSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------------
T ss_pred             hhcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccc------------
Confidence            3457777   7876  7999999999999999999999999999998899999999999987532100            


Q ss_pred             cccccchhHHHHHHhhccCCcccccccC------CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                                    ......++.++|.+      ++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++
T Consensus        72 --------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~  137 (144)
T 2nyc_A           72 --------------YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILK  137 (144)
T ss_dssp             -----------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred             --------------cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHH
Confidence                          00125678888865      5789999999999999999999999999998899999999999999


Q ss_pred             HHHHh
Q 025984          232 AALQI  236 (245)
Q Consensus       232 ~~~~~  236 (245)
                      ++.+.
T Consensus       138 ~l~~~  142 (144)
T 2nyc_A          138 YILLG  142 (144)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            98753

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.82  E-value=3.8e-20  Score=140.87  Aligned_cols=122  Identities=25%  Similarity=0.364  Sum_probs=107.4

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (245)
                      .++|+++|++..+++++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+.++.....                
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----------------   90 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGV----------------   90 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSS----------------
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCC----------------
Confidence            3599999987556899999999999999999999999999998999999999999997642100                


Q ss_pred             cchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                                 .....++.++|.+++.++.+++++.+++++|.+.+.+++||+|++ +++|+||.+||++
T Consensus        91 -----------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           91 -----------DMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             -----------CCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             -----------CcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence                       013578999999989999999999999999999999999999965 9999999999975

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.82  E-value=1.6e-20  Score=139.96  Aligned_cols=126  Identities=25%  Similarity=0.404  Sum_probs=107.7

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhh-hhhcccCCCCCCCCCCcccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~  158 (245)
                      +...+++++|.+  ++.++++++++.++.+.|.+++++.+||+|++|+++|+|+..|+. ++... +.            
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-~~------------   69 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA-GL------------   69 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG-TC------------
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhc-CC------------
Confidence            345689999998  799999999999999999999999999998889999999999998 33210 00            


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                    .....++.++|.++++++.+++++.+++++|.+.+.+++||+|+ |+++|+||.+|+++++.+
T Consensus        70 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           70 --------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             --------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC-
T ss_pred             --------------CccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence                          01257899999988999999999999999999999999999997 999999999999987643

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.82  E-value=1.4e-19  Score=149.36  Aligned_cols=154  Identities=21%  Similarity=0.287  Sum_probs=113.1

Q ss_pred             CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC--CcEEEEEehhhhhhhhccc--CCCCCC----
Q 025984           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALDSIS--GSGRAD----  150 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~--g~~~Giv~~~dl~~~~~~~--~~~~~~----  150 (245)
                      ....++|+|+|++  +++++.+++++.++.++|.+++++.+||||++  |+++|+|+..||+.++...  ......    
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~   86 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA   86 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence            4567899999998  89999999999999999999999999999974  6899999999998764311  000000    


Q ss_pred             -------------------CC---CCcccc---------------ccc--------------------------------
Q 025984          151 -------------------NS---MFPEVD---------------STW--------------------------------  161 (245)
Q Consensus       151 -------------------~~---~~~~~~---------------~~~--------------------------------  161 (245)
                                         +.   +.....               ..+                                
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (250)
T 2d4z_A           87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR  166 (250)
T ss_dssp             CBCCC---------------------------------------------------------------------------
T ss_pred             cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence                               00   000000               000                                


Q ss_pred             ----cchhHHHHHHhhccCCcc--c-ccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          162 ----KTFNEVQKLLSKTNGKMV--G-DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       162 ----~~~~~~~~~~~~~~~~~v--~-~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                          -...+...+.......++  . .+|++.|++|.+++++.+++.+|.+.|++++||++ .|+++||||++||++++.
T Consensus       167 ~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          167 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence                000111122222244555  3 47999999999999999999999999999999998 699999999999999987


Q ss_pred             H
Q 025984          235 Q  235 (245)
Q Consensus       235 ~  235 (245)
                      .
T Consensus       246 ~  246 (250)
T 2d4z_A          246 G  246 (250)
T ss_dssp             C
T ss_pred             H
Confidence            4

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.82  E-value=7.3e-20  Score=144.25  Aligned_cols=126  Identities=27%  Similarity=0.337  Sum_probs=111.3

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (245)
                      .++|+++|++  +++++++++++.+|+++|.+++++.+||+|++|+++|+|+.+|++.+.....                
T Consensus         8 ~~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~----------------   69 (184)
T 1pvm_A            8 FMRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRN----------------   69 (184)
T ss_dssp             CCBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGC----------------
T ss_pred             ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc----------------
Confidence            4799999998  8999999999999999999999999999998899999999999987532100                


Q ss_pred             cchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                ......++.++|.+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+||++++..
T Consensus        70 ----------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           70 ----------KKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             ----------CCGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             ----------cCcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence                      0113568999999889999999999999999999999999999988999999999999987765

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.81  E-value=8.9e-20  Score=143.33  Aligned_cols=154  Identities=22%  Similarity=0.331  Sum_probs=114.1

Q ss_pred             CCCcceecccccCCCc--eeEE--CCCCCHHHHHHHHHhcCCceeEEE--cCCCcEEEEEehhhhhhhhcccCCCCCCCC
Q 025984           79 SSGVYTVGDFMTTKEE--LHVV--KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRADNS  152 (245)
Q Consensus        79 ~~~~~~v~~im~~~~~--~~~v--~~~~~v~~~~~~~~~~~~~~~~Vv--d~~g~~~Giv~~~dl~~~~~~~~~~~~~~~  152 (245)
                      .+...+|+++|++..+  +.++  .+++++.+|++.|.+++++.+||+  |++|+++|+|+..|++.+........  ..
T Consensus         7 ~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~--~~   84 (185)
T 2j9l_A            7 FAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQ--DG   84 (185)
T ss_dssp             --CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSC--SC
T ss_pred             hhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccC--CC
Confidence            4567899999998311  7788  999999999999999999999999  78899999999999987642110000  00


Q ss_pred             CCccccccccchhHH--HHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHH
Q 025984          153 MFPEVDSTWKTFNEV--QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  230 (245)
Q Consensus       153 ~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll  230 (245)
                      +...   .+..+...  ..........++.++|.++++++.+++++.+++++|.+.+.+++||+| +|+++|+||.+||+
T Consensus        85 ~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll  160 (185)
T 2j9l_A           85 VVST---SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVL  160 (185)
T ss_dssp             CCTT---CEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHH
T ss_pred             cccc---ceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHH
Confidence            0000   00000000  000001235689999988899999999999999999999999999999 89999999999999


Q ss_pred             HHHHHhHH
Q 025984          231 RAALQIKH  238 (245)
Q Consensus       231 ~~~~~~~~  238 (245)
                      +++.+...
T Consensus       161 ~~l~~~~~  168 (185)
T 2j9l_A          161 KHIAQMAN  168 (185)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhhc
Confidence            99887654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.81  E-value=3.5e-19  Score=143.80  Aligned_cols=121  Identities=26%  Similarity=0.347  Sum_probs=109.9

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ...+++++|..  +++++.+++++.+++++|.+++++.+||+|++|+++|+|+.+|+..+.                   
T Consensus        11 ~~~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~-------------------   69 (213)
T 1vr9_A           11 HHMKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD-------------------   69 (213)
T ss_dssp             --CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC-------------------
T ss_pred             cccCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc-------------------
Confidence            34588999998  899999999999999999999999999999889999999999998642                   


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                    ...++.++|.++++++.+++++.+++++|.+.+++++||+|++|+++|+||.+|+++.+...
T Consensus        70 --------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~  131 (213)
T 1vr9_A           70 --------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  131 (213)
T ss_dssp             --------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             --------------CCCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence                          14689999999999999999999999999999999999999889999999999999987653

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=139.99  Aligned_cols=134  Identities=18%  Similarity=0.313  Sum_probs=111.3

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC--CCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~--~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      ....+|+++|.+  +++++++++++.++++.|.+++++.+||+|+  +|+++|+|+..|+..+.......     .    
T Consensus        10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~-----~----   78 (164)
T 2pfi_A           10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS-----R----   78 (164)
T ss_dssp             CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC--------------
T ss_pred             ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc-----c----
Confidence            456799999998  8999999999999999999999999999996  78999999999998764211000     0    


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCC------ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPA------PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  231 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~------~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~  231 (245)
                                    ......++.++|..+      +.++.+++++.+++++|.+.+.+++||+| +|+++|+||.+||++
T Consensus        79 --------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~  143 (164)
T 2pfi_A           79 --------------APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKK  143 (164)
T ss_dssp             ----------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHH
T ss_pred             --------------CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHH
Confidence                          001235677777765      78999999999999999999999999999 799999999999999


Q ss_pred             HHHHhHHH
Q 025984          232 AALQIKHA  239 (245)
Q Consensus       232 ~~~~~~~~  239 (245)
                      ++.+..+.
T Consensus       144 ~~~~~~~~  151 (164)
T 2pfi_A          144 AISNLTNP  151 (164)
T ss_dssp             HHHHHHSC
T ss_pred             HHHhhhCC
Confidence            99876543

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.81  E-value=2e-19  Score=151.65  Aligned_cols=183  Identities=19%  Similarity=0.280  Sum_probs=139.3

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccc--cc---cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RS---SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      .+.++..+.++.++...+.+... .++...  +.   -....+.....   .......+++++|.+  ++.++++++++.
T Consensus       102 ~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~---~~~~~~~~v~~~m~~--~~~~v~~~~~l~  176 (296)
T 3ddj_A          102 NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY---KDLDEIFPVKVFMST--KVQTIYKEVRLD  176 (296)
T ss_dssp             SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG---GGSCCCCBHHHHSBC--SCCCEETTSBHH
T ss_pred             CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhh---hcccccccHHHhhcC--CCeEECCCCCHH
Confidence            45577788899999998876654 343332  11   11111111100   112345599999987  899999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccccC
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP  185 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~  185 (245)
                      ++++.|.+++++.+||+|++|+++|+|+..|++.+...                .|..+..     ......++.++|.+
T Consensus       177 ~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~----------------~~~~~~~-----~~~~~~~v~~~m~~  235 (296)
T 3ddj_A          177 QAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK----------------AVDKLDP-----DYFYGKVVKDVMVT  235 (296)
T ss_dssp             HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH----------------HHHHTCT-----HHHHTCBHHHHSBC
T ss_pred             HHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH----------------HHhhcCh-----hhhcCcCHHHHhCC
Confidence            99999999999999999999999999999999875310                0000000     11236789999999


Q ss_pred             CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT  240 (245)
Q Consensus       186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~  240 (245)
                      +++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+||++++.+.....
T Consensus       236 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~~~  290 (296)
T 3ddj_A          236 NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVME  290 (296)
T ss_dssp             CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHhcch
Confidence            9999999999999999999999999999998999999999999999999876544

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.81  E-value=2.8e-19  Score=150.66  Aligned_cols=124  Identities=27%  Similarity=0.388  Sum_probs=113.2

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhc-----CCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  154 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~-----~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~  154 (245)
                      ....+|+++|++  +++++++++++.++++.|.++     +++++||+|++|+++|+|+.+|++.+.             
T Consensus       134 ~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~-------------  198 (286)
T 2oux_A          134 YEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND-------------  198 (286)
T ss_dssp             SCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC-------------
T ss_pred             CChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC-------------
Confidence            456799999998  899999999999999999987     788899999989999999999998641             


Q ss_pred             ccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                                          ...++.++|.+++++|++++++.+++++|.+++.+++||||++|+++|+||..|+++.+.
T Consensus       199 --------------------~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          199 --------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             --------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             --------------------CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence                                257899999998999999999999999999999999999998999999999999999987


Q ss_pred             HhHH
Q 025984          235 QIKH  238 (245)
Q Consensus       235 ~~~~  238 (245)
                      +...
T Consensus       259 ~e~~  262 (286)
T 2oux_A          259 DEAA  262 (286)
T ss_dssp             HHHH
T ss_pred             HHhH
Confidence            6543

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.81  E-value=1.7e-19  Score=138.30  Aligned_cols=127  Identities=25%  Similarity=0.445  Sum_probs=109.9

Q ss_pred             ceecccccCC----CceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           83 YTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        83 ~~v~~im~~~----~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      .+|+++|++.    .++.++.+++++.+|++.|.+++++.+||++ +|+++|+|+..|+.++....+.            
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~------------   73 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQER------------   73 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTC------------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccC------------
Confidence            4799999853    3679999999999999999999999999965 7899999999999876321110            


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                    .....++.++|.+++.++.+++++.+++++|.+.+.+++||+| +|+++|+||.+||++++....
T Consensus        74 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~  137 (157)
T 4fry_A           74 --------------SSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQ  137 (157)
T ss_dssp             --------------CSSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC
T ss_pred             --------------CccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence                          0136789999999999999999999999999999999999999 799999999999999988654

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.80  E-value=6.4e-19  Score=147.84  Aligned_cols=122  Identities=34%  Similarity=0.487  Sum_probs=109.3

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhc-----CCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~-----~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~  155 (245)
                      ...+++++|++  +++++++++++.++++.|.++     ++..+||+|++|+++|+|+.+|++...              
T Consensus       133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~--------------  196 (278)
T 2yvy_A          133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD--------------  196 (278)
T ss_dssp             CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC--------------
T ss_pred             CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC--------------
Confidence            46689999998  899999999999999999987     689999999889999999999998631              


Q ss_pred             cccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                         ...++.++|.+++++|++++++.+++++|.+++.+.+||||++|+++|+||..|+++.+.+
T Consensus       197 -------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          197 -------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             -------------------TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             -------------------CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence                               2578999998889999999999999999999999999999989999999999999998876


Q ss_pred             hH
Q 025984          236 IK  237 (245)
Q Consensus       236 ~~  237 (245)
                      ..
T Consensus       258 e~  259 (278)
T 2yvy_A          258 EA  259 (278)
T ss_dssp             --
T ss_pred             Hh
Confidence            54

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.79  E-value=1.9e-18  Score=145.65  Aligned_cols=174  Identities=24%  Similarity=0.287  Sum_probs=137.3

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccccc---cccccccccccCCCCC---------CCCcceecccccCCCceeEE
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS---SAVFASGTLTANSAAP---------SSGVYTVGDFMTTKEELHVV   98 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~v~~im~~~~~~~~v   98 (245)
                      .++++..+.++.+++..|.+... .++...+.   -+...+..........         .....+++++|++  ++.++
T Consensus        29 ~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v  106 (296)
T 3ddj_A           29 NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP--NPVTV  106 (296)
T ss_dssp             SCCEECTTSBHHHHHHHTTGGGCCEEEEESSSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEE--SCCCE
T ss_pred             CCcEECCCccHHHHHHHHHHCCCceEEEECCeEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccC--CCEEE
Confidence            57789999999999999987764 33332221   1111121111100000         0125689999998  89999


Q ss_pred             CCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCc
Q 025984           99 KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM  178 (245)
Q Consensus        99 ~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (245)
                      .+++++.++++.|.+++++.+||+|++|+++|+++.+|++.+...                             .....+
T Consensus       107 ~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~-----------------------------~~~~~~  157 (296)
T 3ddj_A          107 YNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD-----------------------------LDEIFP  157 (296)
T ss_dssp             ETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG-----------------------------SCCCCB
T ss_pred             cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhc-----------------------------cccccc
Confidence            999999999999999999999999999999999999999875321                             123568


Q ss_pred             ccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       179 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                      +.++|.+++.++.+++++.++++.|.+.+.+++||+|++|+++|+||.+|+++++...
T Consensus       158 v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~  215 (296)
T 3ddj_A          158 VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA  215 (296)
T ss_dssp             HHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             HHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence            9999999899999999999999999999999999999899999999999999998743

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.78  E-value=9.3e-19  Score=144.00  Aligned_cols=151  Identities=22%  Similarity=0.279  Sum_probs=107.0

Q ss_pred             cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCC------------
Q 025984           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA------------  149 (245)
Q Consensus        82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~------------  149 (245)
                      ..+|+++|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+.++.........            
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~   83 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNIL   83 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHH
Confidence            5689999998  89999999999999999999999999999998999999999999976421110000            


Q ss_pred             ---------CC-C------------CC-cccc------------cccc--------------------------------
Q 025984          150 ---------DN-S------------MF-PEVD------------STWK--------------------------------  162 (245)
Q Consensus       150 ---------~~-~------------~~-~~~~------------~~~~--------------------------------  162 (245)
                               .. .            +. ..+.            ..++                                
T Consensus        84 ~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~~  163 (245)
T 3l2b_A           84 DTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKN  163 (245)
T ss_dssp             HHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHc
Confidence                     00 0            00 0000            0000                                


Q ss_pred             -------chhHHHHHHhhccCCccccccc-CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          163 -------TFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       163 -------~~~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                             .+..+.-........++.++|+ +++.++.+++++.+++++|.+++++++||+|++|+++|+||.+|++++..
T Consensus       164 ~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~~  243 (245)
T 3l2b_A          164 NITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTHK  243 (245)
T ss_dssp             TCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-------
T ss_pred             CCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchhh
Confidence                   0000000001123567899999 88999999999999999999999999999998899999999999998754

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.78  E-value=1.9e-18  Score=147.35  Aligned_cols=176  Identities=19%  Similarity=0.266  Sum_probs=132.1

Q ss_pred             cccccCCCCchhhhhhhhccCC-ccccccccc------c----cccccccccC--CCCCCCCcceeccc---ccCCCcee
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------A----VFASGTLTAN--SAAPSSGVYTVGDF---MTTKEELH   96 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~----~~~~~~~~~~--~~~~~~~~~~v~~i---m~~~~~~~   96 (245)
                      +.++..+.++.++...+.+... .++...+..      +    ...+....+.  .........+++++   |.+  ++.
T Consensus       124 ~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~--~~~  201 (323)
T 3t4n_C          124 TASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQD--NMK  201 (323)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCT--TCC
T ss_pred             ceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCC--CcE
Confidence            4566778888999888865544 333222111      0    0000000000  00012345689999   877  799


Q ss_pred             EECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccC
Q 025984           97 VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNG  176 (245)
Q Consensus        97 ~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (245)
                      ++.+++++.++.+.|.+++++.+||+|++|+++|+|+..|++++....                          ......
T Consensus       202 ~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~--------------------------~~~~~~  255 (323)
T 3t4n_C          202 SCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG--------------------------IYNDLS  255 (323)
T ss_dssp             CBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTT--------------------------HHHHTT
T ss_pred             EECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhc--------------------------hhhhcc
Confidence            999999999999999999999999999999999999999998763200                          001235


Q ss_pred             CcccccccC------CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          177 KMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       177 ~~v~~~m~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                      .++.++|.+      ++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++...
T Consensus       256 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          256 LSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             SBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             CCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            688999987      789999999999999999999999999999889999999999999998764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.77  E-value=2.1e-18  Score=144.19  Aligned_cols=198  Identities=18%  Similarity=0.232  Sum_probs=133.0

Q ss_pred             cccccCCCCchhhhhhhhccCC-ccccccc--c---ccccccccc-ccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR--S---SAVFASGTL-TANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~---~~~~~~~~~-~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      .+++..+.++.++...+.+... .++...+  .   -....+... .+. ........+++++|.+  ++.++++++++.
T Consensus        70 ~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~-~~~~~~~~~v~~~m~~--~~~~v~~~~~l~  146 (282)
T 2yzq_A           70 VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA-KSEKYKGVEIEPYYQR--YVSIVWEGTPLK  146 (282)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT-TCSGGGGCBSTTTSBS--CCCCEETTSBHH
T ss_pred             CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHh-ccCCcccCcHHHHhCC--CCEEECCCCCHH
Confidence            5677889999999999876654 3333221  1   111112111 111 0112345689999987  799999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhccc-CCCCCCCCCCcc----ccccccchhHHHHHHhhccCCccc
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFPE----VDSTWKTFNEVQKLLSKTNGKMVG  180 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~  180 (245)
                      ++.+.|.+++++.+||+|++|+++|+|+..|++...... ........+...    ....+..+..  .........+++
T Consensus       147 ~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~  224 (282)
T 2yzq_A          147 AALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFE--KFELQLPNKPVA  224 (282)
T ss_dssp             HHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------------------------CCCBGG
T ss_pred             HHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHh--HhhhhhccCCHH
Confidence            999999999999999999889999999999998321000 000000000000    0011111100  001123467899


Q ss_pred             ccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          181 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       181 ~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      ++|.+++.++.+++++.+|+++|.+.+++++||+|++|+++|+||++|+++++.+
T Consensus       225 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          225 EIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             GTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred             HhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence            9999999999999999999999999999999999977899999999999987654

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.76  E-value=1.2e-18  Score=145.27  Aligned_cols=181  Identities=15%  Similarity=0.246  Sum_probs=131.8

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccc--cc---cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RS---SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      .+.++..+.++.++...+.++.. .++...  +.   -....+......  .......+++++|.+  ++.++++++++.
T Consensus        93 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~--~~~~~~~~v~~~m~~--~~~~v~~~~~l~  168 (280)
T 3kh5_A           93 NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALL--DKIDENEVIDDYITR--DVIVATPGERLK  168 (280)
T ss_dssp             SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHG--GGSCTTCBSGGGCBC--SCCCBCTTCBHH
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHh--hcCCCCCCHHHHhCC--CCeEECCCCcHH
Confidence            46677888999999999877654 333322  11   111111111100  112234589999988  799999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccccC
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP  185 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~  185 (245)
                      ++++.|.+++++.+||+ ++|+++|+|+.+|+++.....              ..|..+..  .........++.++|.+
T Consensus       169 ~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~--------------~~~~~~~~--~~~~~~~~~~v~~~m~~  231 (280)
T 3kh5_A          169 DVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSD--------------WAFNHMQT--GNVREITNVRMEEIMKR  231 (280)
T ss_dssp             HHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSH--------------HHHHHHHS--CCTHHHHHCBHHHHSBS
T ss_pred             HHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhh--------------hhhhhhcc--cchhhhhCCcHHHHhcC
Confidence            99999999999999999 578999999999998763200              00000000  00001135689999999


Q ss_pred             CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                      ++.++++++++.+|+++|.+.+.+++||+|++|+++|+||.+|+++++
T Consensus       232 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          232 DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence            999999999999999999999999999999888999999999999875

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.75  E-value=9e-18  Score=139.91  Aligned_cols=173  Identities=20%  Similarity=0.343  Sum_probs=133.7

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc--c----cccccccccccCC----------CCC---CCCcceecccccC
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--S----SAVFASGTLTANS----------AAP---SSGVYTVGDFMTT   91 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~----~~~~~~~~~~~~~----------~~~---~~~~~~v~~im~~   91 (245)
                      .+.++..+.++.+++..|.++.. .++...+  .    -....+.......          ...   .....+++++|++
T Consensus        13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   92 (280)
T 3kh5_A           13 KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEE   92 (280)
T ss_dssp             CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBC
T ss_pred             CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcCC
Confidence            46678889999999999987665 4444432  1    1111111110000          000   0124589999998


Q ss_pred             CCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHH
Q 025984           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLL  171 (245)
Q Consensus        92 ~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (245)
                        ++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|+.+.....                           
T Consensus        93 --~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~---------------------------  143 (280)
T 3kh5_A           93 --NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDK---------------------------  143 (280)
T ss_dssp             --SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG---------------------------
T ss_pred             --CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc---------------------------
Confidence              899999999999999999999999999999999999999999998753210                           


Q ss_pred             hhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          172 SKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       172 ~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                       .....++.++|.+++.++.+++++.++++.|.+.+.+++||++ +|+++|+||.+|+++++..
T Consensus       144 -~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~Givt~~dl~~~~~~  205 (280)
T 3kh5_A          144 -IDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDFIKLLGS  205 (280)
T ss_dssp             -SCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHTS
T ss_pred             -CCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHhh
Confidence             1124589999998899999999999999999999999999994 7999999999999998854

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.75  E-value=1.3e-17  Score=149.65  Aligned_cols=123  Identities=34%  Similarity=0.478  Sum_probs=112.2

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhc-----CCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  154 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~-----~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~  154 (245)
                      ....+++++|++  +++++++++++.++.+.|+++     ++.++||+|++|+++|+|+.+|++...             
T Consensus       152 ~~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~-------------  216 (473)
T 2zy9_A          152 YEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD-------------  216 (473)
T ss_dssp             SCTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC-------------
T ss_pred             CCCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC-------------
Confidence            456799999998  899999999999999999986     478999999889999999999998631             


Q ss_pred             ccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                                          .+.++.++|.+++.++++++++.+++++|.+++.+.+||||++|+++|+||.+|+++.+.
T Consensus       217 --------------------~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          217 --------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             --------------------TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             --------------------CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHH
Confidence                                267899999988999999999999999999999999999999999999999999999987


Q ss_pred             HhH
Q 025984          235 QIK  237 (245)
Q Consensus       235 ~~~  237 (245)
                      +..
T Consensus       277 ~e~  279 (473)
T 2zy9_A          277 AEA  279 (473)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.72  E-value=4.6e-17  Score=135.93  Aligned_cols=167  Identities=20%  Similarity=0.246  Sum_probs=113.9

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccc-cccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALE  109 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~  109 (245)
                      .+.++..+.++.++...+.+... .++... +..+...-....+   .......+++++|.+  ++.++++++++.++++
T Consensus        10 ~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl---~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~   84 (282)
T 2yzq_A           10 NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI---LVNPDEEQLAMLVKR--DVPVVKENDTLKKAAK   84 (282)
T ss_dssp             SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-------------CCCBS--CCCEEETTSBHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHH---HhhhccCCHHHHcCC--CCcEECCCCcHHHHHH
Confidence            35567778888888888866554 344333 1111110000000   112346789999998  7899999999999999


Q ss_pred             HHHhcCCceeEEEcCCCcEEEEEehhhhhh-hhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccccCCce
Q 025984          110 ILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPV  188 (245)
Q Consensus       110 ~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~  188 (245)
                      .|.+++.+.+||+|++|+++|+++..|+.+ +....                           ......++.++|..++.
T Consensus        85 ~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~---------------------------~~~~~~~v~~~m~~~~~  137 (282)
T 2yzq_A           85 LMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS---------------------------EKYKGVEIEPYYQRYVS  137 (282)
T ss_dssp             HHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC---------------------------SGGGGCBSTTTSBSCCC
T ss_pred             HHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhcc---------------------------CCcccCcHHHHhCCCCE
Confidence            999999999999998899999999999987 53210                           01124678899988899


Q ss_pred             EecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHH
Q 025984          189 VVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  230 (245)
Q Consensus       189 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll  230 (245)
                      ++.+++++.++++.|.+.+.+++||+|++|+++|+||..|++
T Consensus       138 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          138 IVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL  179 (282)
T ss_dssp             CEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence            999999999999999999999999999889999999999999

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.72  E-value=2.4e-18  Score=159.49  Aligned_cols=156  Identities=19%  Similarity=0.143  Sum_probs=109.3

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHH-hcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCC-CCCccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILV-EKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN-SMFPEV  157 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~-~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~  157 (245)
                      ..+++|+|+|+++.+++++++++++.++.+.|. +++++.+||+|++|+++|+|+.+|+.+...........+ ......
T Consensus       450 ~~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          450 SPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             CTTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC--------------
T ss_pred             cccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence            367899999995448999999999999999999 799999999999999999999999997643211100000 000000


Q ss_pred             -cccccchh-HHHHHHh-----------------hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC
Q 025984          158 -DSTWKTFN-EVQKLLS-----------------KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG  218 (245)
Q Consensus       158 -~~~~~~~~-~~~~~~~-----------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g  218 (245)
                       ...+..+. .......                 .....++.++|+++|.++++++++.+++++|.+++.+++||+ ++|
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G  608 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERG  608 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETT
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECC
Confidence             00000000 0000000                 011224889999999999999999999999999999999999 589


Q ss_pred             cEEEEEEhHHHHHHHHHh
Q 025984          219 KLVGIITRGNVVRAALQI  236 (245)
Q Consensus       219 ~~vGiIt~~dll~~~~~~  236 (245)
                      +++|+||++|+++++.+.
T Consensus       609 ~lvGIVT~~Dll~~~~~~  626 (632)
T 3org_A          609 KLVGIVEREDVAYGYSNS  626 (632)
T ss_dssp             EEEEEEEGGGTEECCCC-
T ss_pred             EEEEEEehhhHHHHHhhh
Confidence            999999999998876554

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.72  E-value=6.3e-17  Score=138.57  Aligned_cols=176  Identities=16%  Similarity=0.163  Sum_probs=129.4

Q ss_pred             ccccCCCCchhhhhhhhccCC-ccccccc--cc----c----cccccccccC--CCCCCCCcceecc---cccCCCceeE
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVSALRR--SS----A----VFASGTLTAN--SAAPSSGVYTVGD---FMTTKEELHV   97 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~----~----~~~~~~~~~~--~~~~~~~~~~v~~---im~~~~~~~~   97 (245)
                      .++..+.++.++...+.+... .++...+  ..    .    ...+......  .........++++   +|.+  ++.+
T Consensus       120 ~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~--~~~~  197 (334)
T 2qrd_G          120 IYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWS--NLAT  197 (334)
T ss_dssp             CCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCS--SCCC
T ss_pred             eeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhCCcccC--CceE
Confidence            566778888899988876554 3332211  10    1    1111000000  0000123467888   4877  7999


Q ss_pred             ECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCC
Q 025984           98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGK  177 (245)
Q Consensus        98 v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (245)
                      +++++++.++++.|.+++++.+||+|++|+++|+|+..|++.+.....                          ......
T Consensus       198 v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~--------------------------~~~~~~  251 (334)
T 2qrd_G          198 ASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGD--------------------------YSNLDL  251 (334)
T ss_dssp             BCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSC--------------------------GGGGGS
T ss_pred             ECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccc--------------------------cccccC
Confidence            999999999999999999999999998899999999999987632100                          001246


Q ss_pred             cccccccC------CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          178 MVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       178 ~v~~~m~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                      ++.++|.+      +++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++....
T Consensus       252 ~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~  317 (334)
T 2qrd_G          252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDK  317 (334)
T ss_dssp             BHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCC
T ss_pred             cHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcc
Confidence            78888874      7899999999999999999999999999998899999999999999987654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.71  E-value=3.2e-17  Score=149.10  Aligned_cols=129  Identities=18%  Similarity=0.213  Sum_probs=111.8

Q ss_pred             CCCCcceecccccCCCceeEECCC-CCHHHHHHHHHhcCCceeEEEc-CCCcEEEEEehhhhhhhhcccCCCCCCCCCCc
Q 025984           78 PSSGVYTVGDFMTTKEELHVVKPT-TTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (245)
Q Consensus        78 ~~~~~~~v~~im~~~~~~~~v~~~-~~v~~~~~~~~~~~~~~~~Vvd-~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~  155 (245)
                      ..+...+|+++|++  +++++.++ +++.+++++|.+++++.+||+| ++|+++|+||.+||+++....           
T Consensus       379 ~~l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~-----------  445 (527)
T 3pc3_A          379 HWWWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM-----------  445 (527)
T ss_dssp             CTTTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH-----------
T ss_pred             ccccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc-----------
Confidence            34667899999998  89999999 9999999999999999999999 789999999999998753210           


Q ss_pred             cccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEEhHHHHH
Q 025984          156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD----GKLVGIITRGNVVR  231 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~----g~~vGiIt~~dll~  231 (245)
                                      ......++.++|.++++++.+++++.+++++|.+.++  +||||++    |+++||||+.||++
T Consensus       446 ----------------~~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~  507 (527)
T 3pc3_A          446 ----------------NRQQSDPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTT  507 (527)
T ss_dssp             ----------------CCCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHH
T ss_pred             ----------------cCcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHH
Confidence                            0123678999999999999999999999999977664  7999974    89999999999999


Q ss_pred             HHHHhH
Q 025984          232 AALQIK  237 (245)
Q Consensus       232 ~~~~~~  237 (245)
                      ++.+..
T Consensus       508 ~l~~~~  513 (527)
T 3pc3_A          508 FIAAGK  513 (527)
T ss_dssp             HHHTCC
T ss_pred             HHHhcc
Confidence            998765

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.69  E-value=8.8e-17  Score=145.21  Aligned_cols=118  Identities=25%  Similarity=0.441  Sum_probs=106.4

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC--CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~--~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (245)
                      +.++.|.+  +++++++++++.++.++|.+++++.+||+|+  +|+++|+|+.+|++..                     
T Consensus       114 ~~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---------------------  170 (511)
T 3usb_A          114 RSESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---------------------  170 (511)
T ss_dssp             TSSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---------------------
T ss_pred             cccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---------------------
Confidence            44566766  7899999999999999999999999999998  8999999999999742                     


Q ss_pred             cchhHHHHHHhhccCCcccccccC-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          162 KTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                 .....++.++|++ +++++++++++.+++++|.+++.+.+||||++|+++|+||.+|+++.+..
T Consensus       171 -----------~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          171 -----------QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             -----------CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             -----------ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence                       1136789999997 89999999999999999999999999999999999999999999998764

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.68  E-value=2.3e-16  Score=134.95  Aligned_cols=178  Identities=20%  Similarity=0.266  Sum_probs=127.1

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccc--ccc----ccccccccccC-----CCCCCCCcceeccc--cc-CCCcee
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RSS----AVFASGTLTAN-----SAAPSSGVYTVGDF--MT-TKEELH   96 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~----~~~~~~~~~~~-----~~~~~~~~~~v~~i--m~-~~~~~~   96 (245)
                      .+.++..+.++.++...+.+... .++...  +..    ....+......     .....+...+++++  |. .  ++.
T Consensus       127 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~  204 (330)
T 2v8q_E          127 PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA--NIA  204 (330)
T ss_dssp             CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCS--SCC
T ss_pred             CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcC--Cce
Confidence            45667788889999988865543 333222  111    11111100000     00011123355555  43 4  689


Q ss_pred             EECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccC
Q 025984           97 VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNG  176 (245)
Q Consensus        97 ~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (245)
                      ++.+++++.++.+.|.+++++.+||+|++|+++|+|+..|++.+......                          ....
T Consensus       205 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~--------------------------~~~~  258 (330)
T 2v8q_E          205 MVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTY--------------------------NNLD  258 (330)
T ss_dssp             CEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCC--------------------------CCCS
T ss_pred             EECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhcccc--------------------------cccc
Confidence            99999999999999999999999999988999999999999976421100                          0013


Q ss_pred             Ccccccc------cCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          177 KMVGDLM------TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       177 ~~v~~~m------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                      .++.++|      .+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++.+..
T Consensus       259 ~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~~  325 (330)
T 2v8q_E          259 VSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG  325 (330)
T ss_dssp             SBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred             CcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhhc
Confidence            4566666      478999999999999999999999999999998899999999999999987653

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.66  E-value=2.5e-16  Score=134.67  Aligned_cols=144  Identities=20%  Similarity=0.243  Sum_probs=110.1

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      +...+|+++|+++.++.++++++++.+|++.|.+++++.+||+|++ ++++|+|+..|++.++...... .. ...... 
T Consensus        32 l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~-~~-~~~~~l-  108 (330)
T 2v8q_E           32 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-AL-VQIYEL-  108 (330)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHH-HT-TTCCCG-
T ss_pred             HHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhc-cc-cchhHH-
Confidence            3567999999655489999999999999999999999999999987 7899999999998753210000 00 000000 


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHHHHHHHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~vGiIt~~dll~~~~~  235 (245)
                         ... .+..+     ...+.++|.+++.++.+++++.+++++|.+.+.+++||+|+ +|+++|+||.+|+++++..
T Consensus       109 ---~~~-~~~~~-----~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~  177 (330)
T 2v8q_E          109 ---EEH-KIETW-----REVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  177 (330)
T ss_dssp             ---GGC-BHHHH-----HHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             ---hhc-cHHHH-----HHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHH
Confidence               000 00000     12345778888999999999999999999999999999998 8999999999999998764

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.64  E-value=1.6e-15  Score=129.20  Aligned_cols=181  Identities=17%  Similarity=0.152  Sum_probs=127.7

Q ss_pred             cccccccCCCCchhhhhhhhccCC-cccccccc------ccccccccccc------CC---CCCCCCcce------eccc
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS------SAVFASGTLTA------NS---AAPSSGVYT------VGDF   88 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~------~~---~~~~~~~~~------v~~i   88 (245)
                      .++.++..+.++.+++..|.+... .++...+.      -+...++...+      ..   .-.......      +.++
T Consensus        40 ~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~  119 (323)
T 3t4n_C           40 YRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGV  119 (323)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC
T ss_pred             CcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCC
Confidence            346677888999999999887765 44443321      00000100000      00   000011122      3334


Q ss_pred             ccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCc-----EEEEEehhhhhhhhcccCCCCCCCCCCccccccccc
Q 025984           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK-----LVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (245)
Q Consensus        89 m~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~-----~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (245)
                      |.+  +++++++++++.++++.|.+++++.+||+|++|.     ++|+|+.+|++.+......                 
T Consensus       120 ~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~-----------------  180 (323)
T 3t4n_C          120 DQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCR-----------------  180 (323)
T ss_dssp             ------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCG-----------------
T ss_pred             CCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCC-----------------
Confidence            566  7899999999999999999999999999998775     9999999999975321000                 


Q ss_pred             hhHHHHHHhhccCCccccc---ccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          164 FNEVQKLLSKTNGKMVGDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~~---m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                             .......++.++   |.+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++....
T Consensus       181 -------~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~  250 (323)
T 3t4n_C          181 -------ETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI  250 (323)
T ss_dssp             -------GGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTH
T ss_pred             -------chhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhch
Confidence                   012235688999   8888999999999999999999999999999998899999999999999887543

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.63  E-value=2.5e-15  Score=135.52  Aligned_cols=118  Identities=28%  Similarity=0.472  Sum_probs=108.3

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEc--CCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd--~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (245)
                      .++++|.+  ++.++++++++.++++.|.+++++.+||+|  ++++++|+|+.+|++...                    
T Consensus        91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~--------------------  148 (491)
T 1zfj_A           91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS--------------------  148 (491)
T ss_dssp             HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--------------------
T ss_pred             hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--------------------
Confidence            56789998  899999999999999999999999999999  789999999999998631                    


Q ss_pred             cchhHHHHHHhhccCCcccccccC-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          162 KTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                  ....++.++|++ +++++++++++.+++++|.+++.+.+||||++|+++|+||.+|+++.+..
T Consensus       149 ------------~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          149 ------------DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             ------------CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ------------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence                        125789999998 89999999999999999999999999999999999999999999999874

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.61  E-value=2.1e-16  Score=142.29  Aligned_cols=117  Identities=22%  Similarity=0.346  Sum_probs=92.7

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      .+++++|..  +++++++++++.++.++|.+++++.+||+|++|+++|+|+.+||+..                      
T Consensus        89 k~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~----------------------  144 (496)
T 4fxs_A           89 KIFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV----------------------  144 (496)
T ss_dssp             HHCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC----------------------
T ss_pred             ccccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc----------------------
Confidence            356788987  89999999999999999999999999999998999999999999732                      


Q ss_pred             chhHHHHHHhhccCCccccccc-C-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~-~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                                .....++.++|+ + +++++++++++.+++++|.+++++.+||||++|+++|+||.+|+++..
T Consensus       145 ----------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          145 ----------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             ----------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             ----------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence                      113678999999 4 489999999999999999999999999999999999999999999864

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.60  E-value=4.7e-17  Score=146.97  Aligned_cols=120  Identities=28%  Similarity=0.319  Sum_probs=2.5

Q ss_pred             eeccc-ccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC---CcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984           84 TVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (245)
Q Consensus        84 ~v~~i-m~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~---g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (245)
                      ...++ |++  +++++++++++.+++++|.+++++.+||+|++   |+++|+|+.+|++...                  
T Consensus        97 ~~~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~------------------  156 (503)
T 1me8_A           97 KNFKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPIDL------------------  156 (503)
T ss_dssp             HTTTC---------------------------------------------------------------------------
T ss_pred             hhcccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhhh------------------
Confidence            33445 888  89999999999999999999999999999987   8999999999998520                  


Q ss_pred             cccchhHHHHHHhhccCCcccccccCC--ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          160 TWKTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                   .....++.++|+++  ++++++++++.+++++|.+++.+.+||+|++|+++|+||.+||++.+...
T Consensus       157 -------------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          157 -------------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             ------------------------------------------------------------------------------C
T ss_pred             -------------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence                         11257899999987  99999999999999999999999999999999999999999999987643

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.60  E-value=6.8e-15  Score=125.85  Aligned_cols=145  Identities=21%  Similarity=0.291  Sum_probs=105.8

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (245)
                      ...+++++|+++.+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+.................. 
T Consensus        20 ~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~-   98 (334)
T 2qrd_G           20 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEID-   98 (334)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGG-
T ss_pred             hcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHh-
Confidence            357999999886678999999999999999999999999999986 899999999999875311000000000000000 


Q ss_pred             cccchhHHHHHHhhccCCcccccccCCc--eEecCCCCHHHHHHHHHHcCCCEEEEEcCCCc-----EEEEEEhHHHHHH
Q 025984          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVDADGK-----LVGIITRGNVVRA  232 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~--~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~-----~vGiIt~~dll~~  232 (245)
                       ......+.+.        +.++|.+++  +++.+++++.++++.|.+.+.+++||+|++|.     ++|+||.+|++++
T Consensus        99 -~~~~~~i~~~--------l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~  169 (334)
T 2qrd_G           99 -KFRLLGLREV--------ERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKF  169 (334)
T ss_dssp             -SCBHHHHHHH--------HHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHH
T ss_pred             -hhchhhHHHH--------HHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHH
Confidence             0001111111        123465556  89999999999999999999999999997654     9999999999998


Q ss_pred             HHH
Q 025984          233 ALQ  235 (245)
Q Consensus       233 ~~~  235 (245)
                      +..
T Consensus       170 ~~~  172 (334)
T 2qrd_G          170 ISM  172 (334)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            864

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.57  E-value=1.8e-16  Score=143.11  Aligned_cols=118  Identities=32%  Similarity=0.530  Sum_probs=6.7

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccc
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (245)
                      +++++|.+  +++++++++++.++++.|.+++++.+||+|++|+++|+|+.+|++...                      
T Consensus        96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~----------------------  151 (494)
T 1vrd_A           96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK----------------------  151 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc----------------------
Confidence            56788988  899999999999999999999999999999889999999999998520                      


Q ss_pred             hhHHHHHHhhccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          164 FNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                                ....++.++|.+  +++++.+++++.+++++|.+.+++.+||||++|+++|+||.+|+++.+..
T Consensus       152 ----------~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          152 ----------NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             -------------------------------------------------------------------CHHHHTC
T ss_pred             ----------CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence                      125789999997  89999999999999999999999999999999999999999999998754

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.55  E-value=3e-16  Score=141.09  Aligned_cols=117  Identities=30%  Similarity=0.417  Sum_probs=3.5

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      .+++++|..  +++++++++++.++.++|.+++++.+||+| +|+++|+|+.+||...                      
T Consensus        88 k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~----------------------  142 (490)
T 4avf_A           88 KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVK----------------------  142 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhc----------------------
Confidence            467888987  899999999999999999999999999999 7899999999999742                      


Q ss_pred             chhHHHHHHhhccCCccccccc-C-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~-~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                                .....++.++|+ + +++++++++++.+++++|.+++++.+||||++|+++|+||++|+++...
T Consensus       143 ----------~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          143 ----------PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             ----------cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                      113578999999 4 6899999999999999999999999999999999999999999998754

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.47  E-value=3.3e-15  Score=132.61  Aligned_cols=110  Identities=31%  Similarity=0.491  Sum_probs=0.0

Q ss_pred             ccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchh
Q 025984           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN  165 (245)
Q Consensus        89 m~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (245)
                      |..  +++++.++.++.++.++|.+++++.+||+|+   +|+++||||.+|+.-.                         
T Consensus       144 ~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~-------------------------  196 (556)
T 4af0_A          144 FIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ-------------------------  196 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccC--CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc-------------------------
Confidence            444  6899999999999999999999999999986   5799999999998632                         


Q ss_pred             HHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       166 ~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                              ....++.++|++++++++.+.++++|.++|.++++..+||||++|+++|+||++|+++..
T Consensus       197 --------d~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          197 --------DAETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             --------ccceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence                    135789999999999999999999999999999999999999999999999999998764

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.47  E-value=7.8e-16  Score=139.52  Aligned_cols=119  Identities=29%  Similarity=0.460  Sum_probs=71.4

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ++.++|.+  +++++.+++++.++.++|.+++++.+||+|+   +|+++|+|+.+|+.....                  
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~------------------  168 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE------------------  168 (514)
T ss_dssp             TCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC----------------------
T ss_pred             hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh------------------
Confidence            67788987  7899999999999999999999999999997   589999999999975310                  


Q ss_pred             ccchhHHHHHHhhccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                                  .....++.++|.+  +++++.+++++.+++++|.+.+.+.+||||++|+++|+||++|+++.+.
T Consensus       169 ------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          169 ------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             ------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             ------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence                        0125789999998  8999999999999999999999999999999999999999999987653

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.41  E-value=1.4e-14  Score=130.36  Aligned_cols=114  Identities=36%  Similarity=0.631  Sum_probs=1.8

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccc
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (245)
                      ...+.|..  ++.++.+++++.++.+.|.+++++.+||+|+ ++++|+|+.+|++. .                      
T Consensus        94 ~~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~-~----------------------  147 (486)
T 2cu0_A           94 RAERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA-R----------------------  147 (486)
T ss_dssp             TCC-----------------------------------------------------------------------------
T ss_pred             chhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc-C----------------------
Confidence            34567887  8999999999999999999999999999998 89999999999873 0                      


Q ss_pred             hhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                                 ...++.++|.++++++++++++.+++++|.+.+.+.+||||++|+++|+||.+||++.+.
T Consensus       148 -----------~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          148 -----------EGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             ----------------------------------------------------------------------C
T ss_pred             -----------CCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence                       256889999988999999999999999999999999999999999999999999999864

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.27  E-value=1.6e-11  Score=98.67  Aligned_cols=151  Identities=13%  Similarity=0.048  Sum_probs=79.8

Q ss_pred             ccccccccCCCCchhhhhhhhccCC-cccccc-cccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           30 ALQLPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      ...++++..+.++.++...+.++.. .++... +..+...-....+.   ......+++++|++  ++.++.+++++.++
T Consensus        20 ~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~---~~~~~~~v~~im~~--~~~~v~~~~~l~~a   94 (213)
T 1vr9_A           20 TQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLL---DLDLDSSVFNKVSL--PDFFVHEEDNITHA   94 (213)
T ss_dssp             BSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGT---TSCTTSBSGGGCBC--TTCCEETTSBHHHH
T ss_pred             cCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHH---hhcCCCcHHHHccC--CCEEECCCCcHHHH
Confidence            4456778889999999999887665 444332 22111111111111   11235689999998  89999999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccccCC-
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA-  186 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~-  186 (245)
                      ++.|.+++++.+||+|++|+++|+|+.+|++.....                                .....+.+.+- 
T Consensus        95 ~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~--------------------------------~~~~~~~~~~l~  142 (213)
T 1vr9_A           95 LLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE--------------------------------ALAMDVPGIRFS  142 (213)
T ss_dssp             HHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH--------------------------------SCC---------
T ss_pred             HHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH--------------------------------HhcCCCCcEEEE
Confidence            999999999999999988999999999999975321                                11112222221 


Q ss_pred             ceEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 025984          187 PVVVRETTNLEDAARLLLETKYRRLPVVDAD  217 (245)
Q Consensus       187 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~  217 (245)
                      +.+.....++.++.++|.+.+.+.++|++.+
T Consensus       143 ~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~  173 (213)
T 1vr9_A          143 VLLEDKPGELRKVVDALALSNINILSVITTR  173 (213)
T ss_dssp             -------------------------------
T ss_pred             EEeCCCCccHHHHHHHHHHCCCcEEEEEEEe
Confidence            1111333459999999999999999987643

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.19  E-value=4.5e-11  Score=78.82  Aligned_cols=69  Identities=28%  Similarity=0.426  Sum_probs=56.1

Q ss_pred             eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhc
Q 025984           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (245)
Q Consensus        95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (245)
                      ++++.+++++.+|+++|.+++++++||+| +|+++|+||.+|+.+.....+.                          ..
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~--------------------------~~   54 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGK--------------------------NP   54 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTC--------------------------CG
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCC--------------------------Cc
Confidence            68899999999999999999999999998 5799999999999864321111                          11


Q ss_pred             cCCcccccccCCceEe
Q 025984          175 NGKMVGDLMTPAPVVV  190 (245)
Q Consensus       175 ~~~~v~~~m~~~~~~v  190 (245)
                      .+.+++++|+++|++|
T Consensus        55 ~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A           55 KEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             GGCBGGGTCEECTTCC
T ss_pred             ccCCHHHhcCCCCeEC
Confidence            2568999999988764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.02  E-value=3.9e-10  Score=87.08  Aligned_cols=60  Identities=37%  Similarity=0.583  Sum_probs=56.2

Q ss_pred             ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                      ..+.+|+++|+++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+
T Consensus        15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~   74 (170)
T 4esy_A           15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGS   74 (170)
T ss_dssp             HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGT
T ss_pred             HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999999998654

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.93  E-value=3.8e-09  Score=77.59  Aligned_cols=101  Identities=14%  Similarity=0.137  Sum_probs=75.6

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc--cc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      .+.++..+.++.++...+.+... .++...+  ..    ....+......     -...+++++|++   +.++.+++++
T Consensus        16 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----~~~~~v~~~m~~---~~~v~~~~~l   87 (129)
T 3jtf_A           16 RMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-----EPALDIRSLVRP---AVFIPEVKRL   87 (129)
T ss_dssp             GCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----CTTSCGGGGCBC---CCEEETTCBH
T ss_pred             HeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----cCCcCHHHHhCC---CeEeCCCCcH
Confidence            45678889999999999887665 4443332  11    12222211111     135689999975   7899999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      .++++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus        88 ~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~  123 (129)
T 3jtf_A           88 NVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQ  123 (129)
T ss_dssp             HHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            999999999999999999998999999999999975

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.90  E-value=4e-09  Score=77.19  Aligned_cols=103  Identities=20%  Similarity=0.198  Sum_probs=76.8

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc--c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      .+.++..+.++.++...+.+... .++...+  .    -....+......   ......+++++|++   +.++++++++
T Consensus        14 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~---~~~~~~~v~~~m~~---~~~v~~~~~l   87 (127)
T 3nqr_A           14 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR---SDAEAFSMDKVLRT---AVVVPESKRV   87 (127)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGS---TTCCCCCHHHHCBC---CCEEETTCBH
T ss_pred             HeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh---ccCCCCCHHHHcCC---CeEECCCCcH
Confidence            36678889999999999876654 4443322  1    122222221111   12356789999965   6789999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      .++++.|.+++.+.+||+|++|+++|+||..|++++
T Consensus        88 ~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~  123 (127)
T 3nqr_A           88 DRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILEL  123 (127)
T ss_dssp             HHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            999999999999999999999999999999999875

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.90  E-value=3e-09  Score=78.93  Aligned_cols=104  Identities=13%  Similarity=0.084  Sum_probs=77.7

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc--c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      .+.++..+.++.++...+.+... .++...+  .    -+...+......  .......+++++|++   +.++++++++
T Consensus        14 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~--~~~~~~~~v~~~m~~---~~~v~~~~~l   88 (136)
T 3lfr_A           14 QMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL--KADGDSDDVKKLLRP---ATFVPESKRL   88 (136)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGG--SSSGGGCCGGGTCBC---CCEEETTCBH
T ss_pred             HEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH--hccCCCcCHHHHcCC---CeEECCCCcH
Confidence            46678889999999999876654 4443322  1    122222222111  122356689999976   7899999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      .++++.|.+++.+.+||+|++|+++|+||..|++++
T Consensus        89 ~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~  124 (136)
T 3lfr_A           89 NVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQ  124 (136)
T ss_dssp             HHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTT
T ss_pred             HHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            999999999999999999999999999999999975

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.88  E-value=4.7e-09  Score=69.02  Aligned_cols=48  Identities=17%  Similarity=0.419  Sum_probs=44.2

Q ss_pred             ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       187 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      ++++.+++++.+|+++|.++++.++||+| +|+++|+||.+|+++.+..
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~   49 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVA   49 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence            67899999999999999999999999998 6899999999999977543

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.87  E-value=2.1e-09  Score=78.76  Aligned_cols=106  Identities=15%  Similarity=0.157  Sum_probs=77.6

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      .++.+..+.++.++...+.++.. .++...+..    ....+......  .......+++++|.+  ++.++.+++++.+
T Consensus        14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~--~~~~~~~~v~~~m~~--~~~~v~~~~~l~~   89 (128)
T 3gby_A           14 DYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRK--GWPTVKEKLGEELLE--TVRSYRPGEQLFD   89 (128)
T ss_dssp             CSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCS--SSCCTTCBCCGGGCB--CCCCBCTTSBGGG
T ss_pred             CcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHh--hCCcccCcHHHHccC--CCcEECCCCCHHH
Confidence            36677789999999999876654 333322221    11222111111  112223679999998  8999999999999


Q ss_pred             HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +++.|.+++.+.+||+|++|+++|+|+..|+++++
T Consensus        90 ~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (128)
T 3gby_A           90 NLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL  124 (128)
T ss_dssp             SHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999763

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.85  E-value=2.7e-09  Score=82.52  Aligned_cols=104  Identities=17%  Similarity=0.087  Sum_probs=78.3

Q ss_pred             cccccccCCCCchhhhhhhhccCC-ccccccc--cc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRR--SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  103 (245)
                      ..+.++..+.++.++...+.++.. .++...+  ..    +...+......    .-...+++++| +  ++.+++++++
T Consensus        52 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~----~~~~~~v~~im-~--~~~~v~~~~~  124 (172)
T 3lhh_A           52 SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI----AGERLELVDLV-K--NCNFVPNSLS  124 (172)
T ss_dssp             GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH----TTCCCCGGGGC-B--CCEEEETTCC
T ss_pred             HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh----hcCcccHHHHh-c--CCeEeCCCCC
Confidence            456788899999999999987665 4444332  11    12222111111    11266899999 5  6899999999


Q ss_pred             HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +.++++.|.+++.+.+||+|++|+++|+||..|++.++
T Consensus       125 l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l  162 (172)
T 3lhh_A          125 GMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDAL  162 (172)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHH
Confidence            99999999999999999999999999999999999763

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.85  E-value=2.8e-09  Score=78.55  Aligned_cols=105  Identities=14%  Similarity=0.059  Sum_probs=77.7

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc--c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      .+.++..+.++.++...+.++.. .++...+  .    -....+...... ........+++++|.   ++.++++++++
T Consensus        13 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~-~~~~~~~~~v~~~m~---~~~~v~~~~~l   88 (130)
T 3hf7_A           13 EIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT-EKKEFTKEIMLRAAD---EIYFVPEGTPL   88 (130)
T ss_dssp             GCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHT-SSSCCCHHHHHHHSB---CCCEEETTCBH
T ss_pred             HEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHh-ccCccchhhHHHhcc---CCeEeCCCCcH
Confidence            46678889999999999887665 4554321  1    112222221111 112234568999995   48899999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      .++++.|.+++.+.+||+|++|+++|+||.+|++++
T Consensus        89 ~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~  124 (130)
T 3hf7_A           89 STQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE  124 (130)
T ss_dssp             HHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHH
Confidence            999999999999999999999999999999999975

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.82  E-value=1.3e-08  Score=76.34  Aligned_cols=63  Identities=19%  Similarity=0.343  Sum_probs=57.6

Q ss_pred             ccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHHHHHHHHh
Q 025984          174 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       174 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-g~~vGiIt~~dll~~~~~~  236 (245)
                      ....+++++|.+  ++.++.+++++.++++.|.+.+.+++||+|++ |+++|+||.+|+++.+...
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~   85 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE   85 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            347889999998  89999999999999999999999999999987 8999999999999987653

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.81  E-value=8e-09  Score=78.49  Aligned_cols=100  Identities=14%  Similarity=0.091  Sum_probs=75.2

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccccc--c----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS--S----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      .+.++..+.++.++...+.++.. .++...+.  .    +...+......  . . ...+++++|++   +.++++++++
T Consensus        49 ~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~--~-~-~~~~v~~im~~---~~~v~~~~~l  121 (156)
T 3oi8_A           49 RMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMF--N-P-EQFHLKSILRP---AVFVPEGKSL  121 (156)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSS--C-G-GGCCHHHHCBC---CCEEETTSBH
T ss_pred             HeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH--c-C-CcccHHHHcCC---CEEECCCCCH
Confidence            46778889999999999876654 44433221  1    22222221111  1 1 46789999976   7899999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~  138 (245)
                      .++++.|.+++.+.+||+|++|+++|+||..|++
T Consensus       122 ~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          122 TALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             HHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             HHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            9999999999999999999999999999999986

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.79  E-value=5.6e-09  Score=76.72  Aligned_cols=103  Identities=15%  Similarity=0.112  Sum_probs=75.5

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc--cc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      .+.++..+.++.++...+.+... .++...+  ..    ....+......   ......+++++|++   +.++++++++
T Consensus        17 ~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~---~~~~~~~v~~~m~~---~~~v~~~~~l   90 (130)
T 3i8n_A           17 VVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQ---SGSGQKQLGAVMRP---IQVVLNNTAL   90 (130)
T ss_dssp             CCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHH---TTTTTSBHHHHSEE---CCEEETTSCH
T ss_pred             HEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHh---cCCCcCCHHHHhcC---CcCcCCCCcH
Confidence            35567889999999999887654 4443322  11    11111111110   11236689999954   7899999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      .++++.|.+++.+.+||+|++|+++|+||..|++++
T Consensus        91 ~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~  126 (130)
T 3i8n_A           91 PKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEH  126 (130)
T ss_dssp             HHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHH
Confidence            999999999999999999999999999999999875

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.78  E-value=1.5e-08  Score=82.67  Aligned_cols=60  Identities=18%  Similarity=0.341  Sum_probs=56.9

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      ..+++++|.++++++.+++++.+|+++|.+.+++++||+|++|+++|+||..|+++++..
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~   65 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD   65 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHC
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            578999999999999999999999999999999999999988999999999999999864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.78  E-value=8.8e-09  Score=77.23  Aligned_cols=108  Identities=20%  Similarity=0.247  Sum_probs=76.2

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc-cc----ccccccccccC------------CCCCCCCcceecccccCCC
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR-SS----AVFASGTLTAN------------SAAPSSGVYTVGDFMTTKE   93 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~----~~~~~~~~~~~------------~~~~~~~~~~v~~im~~~~   93 (245)
                      .++++..+.++.++...+.+... .++...+ ..    +...+......            .........+++++|.+  
T Consensus        16 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--   93 (152)
T 4gqw_A           16 DLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGKLVGDLMTP--   93 (152)
T ss_dssp             TCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CCBHHHHSEE--
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccccHHHhcCC--
Confidence            36677888999999999876654 3333222 11    11111100000            00012345689999998  


Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +++++++++++.++++.|.+++.+.+||+|++|+++|+|+..|++++.
T Consensus        94 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~  141 (152)
T 4gqw_A           94 APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAA  141 (152)
T ss_dssp             SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence            789999999999999999999999999999999999999999999864

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.77  E-value=2.3e-08  Score=75.17  Aligned_cols=60  Identities=23%  Similarity=0.236  Sum_probs=56.1

Q ss_pred             CCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          176 GKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       176 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      ..+++++|.+  +++++.+++++.+++++|.+.+.+++||+|++|+++|+||..|+++.+.+
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   88 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT   88 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc
Confidence            4689999998  89999999999999999999999999999988999999999999987754

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.76  E-value=9.3e-09  Score=74.37  Aligned_cols=58  Identities=34%  Similarity=0.665  Sum_probs=54.2

Q ss_pred             cccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       178 ~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      +++++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++.+..
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~   59 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ   59 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            5778899999999999999999999999999999999988999999999999998764

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.76  E-value=9.2e-09  Score=77.99  Aligned_cols=108  Identities=20%  Similarity=0.245  Sum_probs=79.0

Q ss_pred             cccccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      ..+.++..+.++.+++..+.++.. .++...+..    +...+....+..........+++++|.+  ++.++.+++++.
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~   98 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTD   98 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS--SCCCBCTTSBHH
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC--CCcEECCCCcHH
Confidence            346778889999999999876654 333322221    1111111111101122356799999998  899999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ++++.|.+++++.+||+| +|+++|+|+..|++++.
T Consensus        99 ~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l  133 (157)
T 4fry_A           99 ECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSV  133 (157)
T ss_dssp             HHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            999999999999999999 79999999999999864

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.74  E-value=1.9e-08  Score=76.64  Aligned_cols=61  Identities=26%  Similarity=0.401  Sum_probs=54.4

Q ss_pred             CCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          176 GKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       176 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                      ...++++|.+  ++.++.+++++.+|+.+|.+++++++||+|++|+++|+||.+|+++++...
T Consensus        14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~   76 (156)
T 3k6e_A           14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEH   76 (156)
T ss_dssp             HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHH
T ss_pred             hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhc
Confidence            4578889974  688999999999999999999999999999889999999999999987654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.73  E-value=4.3e-09  Score=79.64  Aligned_cols=103  Identities=14%  Similarity=0.107  Sum_probs=76.1

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccc-c---cc---cccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSAL-R---RS---SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~-~---~~---~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  103 (245)
                      .+.++..+.++.++...+.++.. .++.. .   +.   -+...+......    .-...+++++| +  ++.++.++++
T Consensus        31 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~----~~~~~~v~~~m-~--~~~~v~~~~~  103 (153)
T 3oco_A           31 SMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR----IDDKAKISTIM-R--DIVSVPENMK  103 (153)
T ss_dssp             GCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH----HHTTSBGGGTC-B--CCEEEETTSB
T ss_pred             heEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh----cCCCCcHHHHh-C--CCeEECCCCC
Confidence            46677889999999999876654 44433 1   11   111111111000    00256899999 5  6999999999


Q ss_pred             HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +.++++.|.+++.+.+||+|++|+++|+||..|+++++
T Consensus       104 l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l  141 (153)
T 3oco_A          104 VPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEEL  141 (153)
T ss_dssp             HHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHH
Confidence            99999999999999999999999999999999999764

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.73  E-value=2.9e-08  Score=79.09  Aligned_cols=105  Identities=17%  Similarity=0.107  Sum_probs=76.1

Q ss_pred             ccccccCCCCchhhhhhhhcc---C-Cccc-ccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATS---S-DRVS-ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      .+.++..+.++.+++..+.+.   . ..++ ...+..+...-....+.   ......+++++|++  ++.++++++++.+
T Consensus        63 ~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll---~~~~~~~v~~im~~--~~~~v~~~~~l~~  137 (205)
T 3kxr_A           63 QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIF---KHEPHEPLISLLSE--DSRALTANTTLLD  137 (205)
T ss_dssp             CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHT---TSCTTSBGGGGCCS--SCCCEETTSCHHH
T ss_pred             ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHH---hCCCcchHHHHhcC--CCeEECCCCCHHH
Confidence            577888999999999988763   2 1222 11111111100000001   01245689999988  7999999999999


Q ss_pred             HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +++.|.+++.+.+||+|++|+++|+||..|++...
T Consensus       138 a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i  172 (205)
T 3kxr_A          138 AAEAIEHSREIELPVIDDAGELIGRVTLRAATALV  172 (205)
T ss_dssp             HHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999764

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.73  E-value=2.7e-08  Score=75.81  Aligned_cols=60  Identities=33%  Similarity=0.501  Sum_probs=55.9

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      ..+++++|.++++++.+++++.+|+++|.+.+.+.+||+|++|+++|+||.+||++.+..
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   63 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES   63 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHH
Confidence            468899999889999999999999999999999999999988999999999999988764

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.72  E-value=3.2e-08  Score=73.14  Aligned_cols=57  Identities=28%  Similarity=0.503  Sum_probs=53.6

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                      ..+++++|.++++++.+++++.+|++.|.+.+.+.+||+|++|+++|+||.+|+++.
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~   62 (138)
T 2yzi_A            6 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR   62 (138)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             hhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence            578999999999999999999999999999999999999988999999999999854

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.71  E-value=1.8e-08  Score=74.24  Aligned_cols=107  Identities=17%  Similarity=0.193  Sum_probs=76.6

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      .++++..+.++.++...+.+... .++...+..    ....+...............+++++|.+  ++.++++++++.+
T Consensus        18 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~   95 (135)
T 2rc3_A           18 TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNED   95 (135)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHH
T ss_pred             CcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccC--CCeEECCCCcHHH
Confidence            46677788899999998876554 333222211    1111111000100112356799999998  8999999999999


Q ss_pred             HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +++.|.+++.+.+||+| +|+++|+|+..|++++.
T Consensus        96 ~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~  129 (135)
T 2rc3_A           96 CMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  129 (135)
T ss_dssp             HHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHH
Confidence            99999999999999999 79999999999998753

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.71  E-value=1.1e-08  Score=78.97  Aligned_cols=59  Identities=31%  Similarity=0.513  Sum_probs=54.8

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ...+++++|++  ++.++++++++.++++.|.+++++.+||+|++|+++|+|+..|++++.
T Consensus        96 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           96 YGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAA  154 (180)
T ss_dssp             TTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             ccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence            45689999998  789999999999999999999999999999999999999999999863

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.71  E-value=4.3e-08  Score=80.50  Aligned_cols=62  Identities=27%  Similarity=0.355  Sum_probs=56.9

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEEhHHHHHHHHHhH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~--g~~vGiIt~~dll~~~~~~~  237 (245)
                      ...++++|.++++++.+++++.+|.++|.+.+++.+||||++  ++++|+||++||++++....
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~   75 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRI   75 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhh
Confidence            678999999999999999999999999999999999999963  68999999999999877654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.70  E-value=3.8e-08  Score=73.17  Aligned_cols=60  Identities=20%  Similarity=0.350  Sum_probs=55.1

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC--cEEEEEEhHHHHHHHHH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG--KLVGIITRGNVVRAALQ  235 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g--~~vGiIt~~dll~~~~~  235 (245)
                      ..+++++|.+++.++.+++++.+++++|.+.+.+.+||+|++|  +++|+||.+|+++.+.+
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~   65 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ   65 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhc
Confidence            4688999999999999999999999999999999999999877  99999999999998754

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.70  E-value=6e-08  Score=73.72  Aligned_cols=61  Identities=33%  Similarity=0.476  Sum_probs=55.6

Q ss_pred             hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      .....+++++|.+ ++++.+++++.+|+++|.+.+.+++||+|++|+++|+||.+|+++.+.
T Consensus        13 ~l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~   73 (159)
T 3fv6_A           13 KLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASI   73 (159)
T ss_dssp             HHTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHT
T ss_pred             HHhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhh
Confidence            3456799999997 669999999999999999999999999998899999999999999873

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.70  E-value=3.6e-08  Score=72.79  Aligned_cols=60  Identities=25%  Similarity=0.418  Sum_probs=55.2

Q ss_pred             cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHH-HHHHH
Q 025984          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV-VRAAL  234 (245)
Q Consensus       175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dl-l~~~~  234 (245)
                      ...+++++|.+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+ ++.+.
T Consensus         6 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   66 (138)
T 2p9m_A            6 KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR   66 (138)
T ss_dssp             TTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred             ccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            3678999999889999999999999999999999999999988999999999999 87654

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.69  E-value=2.2e-08  Score=76.05  Aligned_cols=60  Identities=28%  Similarity=0.412  Sum_probs=55.8

Q ss_pred             cCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          175 NGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       175 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      ...++.++|.+  ++.++.+++++.+|+++|.+.+.+.+||+|++|+++|+||..||++.+.
T Consensus        12 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~   73 (159)
T 1yav_A           12 LEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF   73 (159)
T ss_dssp             TTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHB
T ss_pred             hHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhh
Confidence            46789999988  8999999999999999999999999999998899999999999998764

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.68  E-value=5.3e-08  Score=71.46  Aligned_cols=59  Identities=31%  Similarity=0.454  Sum_probs=54.9

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      +.+++++|.+++.++.+++++.+|++.|.+.+.+++||+| +|+++|+||.+|+++.+..
T Consensus         3 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~   61 (133)
T 2ef7_A            3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGK   61 (133)
T ss_dssp             CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHT
T ss_pred             cccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhc
Confidence            5689999999899999999999999999999999999999 8999999999999987654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.67  E-value=3.8e-08  Score=71.35  Aligned_cols=57  Identities=32%  Similarity=0.353  Sum_probs=52.5

Q ss_pred             cccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       178 ~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      +++++|.+++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||.+|+++.+.+
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~   58 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAE   58 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhc
Confidence            46788998899999999999999999999999999999 8999999999999987654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.66  E-value=2.4e-08  Score=73.35  Aligned_cols=106  Identities=15%  Similarity=0.236  Sum_probs=75.7

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccc--ccc---cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSAL--RRS---SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      .++++..+.++.++...+.+... .++..  .+.   -....+...............+++++|.+  ++.++++++++.
T Consensus        17 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~   94 (133)
T 1y5h_A           17 GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQ   94 (133)
T ss_dssp             TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHH
T ss_pred             CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcC--CCEEECCCCCHH
Confidence            35667788899999998876544 33332  221   11111111000001122346789999988  799999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      ++++.|.+++.+.+||+|+ |+++|+|+..|++++
T Consensus        95 ~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~  128 (133)
T 1y5h_A           95 EMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARH  128 (133)
T ss_dssp             HHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHT
T ss_pred             HHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            9999999999999999998 899999999999875

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.66  E-value=3.7e-08  Score=76.77  Aligned_cols=107  Identities=14%  Similarity=0.093  Sum_probs=77.2

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      .++++..+.++.++...+.+... .++...  +..   +...+...............+++++|.+  ++.++.+++++.
T Consensus        18 ~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~   95 (184)
T 1pvm_A           18 NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVK   95 (184)
T ss_dssp             TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHH
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCC--CCcEECCCCCHH
Confidence            46677889999999999876554 333332  211   1111111100000112346689999998  799999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      ++++.|.+++.+.+||+|++|+++|+|+..|++++
T Consensus        96 ~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~  130 (184)
T 1pvm_A           96 DVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY  130 (184)
T ss_dssp             HHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred             HHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence            99999999999999999988999999999999975

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.65  E-value=2e-08  Score=75.42  Aligned_cols=60  Identities=30%  Similarity=0.416  Sum_probs=55.4

Q ss_pred             cCCccccccc--CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          175 NGKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       175 ~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      ...+++++|.  .+++++.+++++.+|++.|.+.+.+++||+|++|+++|+||.+||++.+.
T Consensus        13 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~   74 (150)
T 3lqn_A           13 QQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGIL   74 (150)
T ss_dssp             HHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTB
T ss_pred             hcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            4678999998  45899999999999999999999999999998999999999999998874

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.64  E-value=4.5e-08  Score=73.97  Aligned_cols=60  Identities=28%  Similarity=0.377  Sum_probs=55.0

Q ss_pred             cCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          175 NGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       175 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      ...+++++|.+  +++++.+++++.+|++.|.+.+.+++||+|++|+++|+||..|+++.+.
T Consensus         9 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~   70 (157)
T 2emq_A            9 MQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAIL   70 (157)
T ss_dssp             -CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSB
T ss_pred             hhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence            46789999986  7899999999999999999999999999998899999999999998764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.63  E-value=5.9e-08  Score=73.75  Aligned_cols=61  Identities=25%  Similarity=0.397  Sum_probs=55.9

Q ss_pred             cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC--CCcEEEEEEhHHHHHHHHH
Q 025984          175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA--DGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~g~~vGiIt~~dll~~~~~  235 (245)
                      ...+++++|.+++.++.+++++.+|+++|.+.+.+++||+|+  +|+++|+||..|+++.+..
T Consensus        11 ~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~   73 (164)
T 2pfi_A           11 HHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA   73 (164)
T ss_dssp             CSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC
T ss_pred             cCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh
Confidence            467899999999999999999999999999999999999996  6899999999999988753

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.62  E-value=9.5e-08  Score=70.88  Aligned_cols=60  Identities=18%  Similarity=0.301  Sum_probs=54.3

Q ss_pred             CCcccc---cccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          176 GKMVGD---LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       176 ~~~v~~---~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      +.++.+   +|.++++++.+++++.+|++.|.+.+.+.+||+|++|+++|+||..|+++.+..
T Consensus         7 ~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   69 (144)
T 2nyc_A            7 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG   69 (144)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             hcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence            456777   788889999999999999999999999999999988999999999999987654

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.62  E-value=4.8e-08  Score=74.75  Aligned_cols=63  Identities=30%  Similarity=0.380  Sum_probs=57.4

Q ss_pred             ccCCcccccccC---CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          174 TNGKMVGDLMTP---APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       174 ~~~~~v~~~m~~---~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                      ....+++++|.+   ++.++.+++++.+|+++|.+.+.+.+||+|++|+++|+||.+||++.+...
T Consensus        21 l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~   86 (165)
T 3fhm_A           21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ   86 (165)
T ss_dssp             SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             hhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhc
Confidence            346789999985   689999999999999999999999999999889999999999999988764

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.61  E-value=1.8e-07  Score=72.41  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=56.4

Q ss_pred             hccCCccccccc--CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHHHHHHHH
Q 025984          173 KTNGKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       173 ~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-g~~vGiIt~~dll~~~~~  235 (245)
                      .....+++++|+  .+++++.+++++.+++++|.+.++..+||+|++ |+++|+||.+||++++..
T Consensus        32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~   97 (173)
T 3ocm_A           32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLIT   97 (173)
T ss_dssp             HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHH
T ss_pred             ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhc
Confidence            346789999996  368899999999999999999999999999976 899999999999998754

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.61  E-value=3.2e-07  Score=82.80  Aligned_cols=103  Identities=19%  Similarity=0.170  Sum_probs=78.8

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc---cc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR---SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  103 (245)
                      +..++..+.++.++...+.++.. .++...+   ..    ++..+...      ......+++++|++ .++++++++++
T Consensus       122 d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~------~~~~~~~V~~vM~~-~~~vtv~~~~~  194 (511)
T 3usb_A          122 DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF------IQDYSIKISDVMTK-EQLITAPVGTT  194 (511)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT------CCCSSSBHHHHCCC-CCCCCEETTCC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh------hccCCCcHHHhccc-CCCEEECCCCC
Confidence            45677889999999999887765 4444432   11    11111111      12346789999995 35899999999


Q ss_pred             HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +.+++++|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus       195 l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~  232 (511)
T 3usb_A          195 LSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI  232 (511)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhh
Confidence            99999999999999999999999999999999999863

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.60  E-value=1e-08  Score=92.54  Aligned_cols=104  Identities=20%  Similarity=0.199  Sum_probs=0.0

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccccc--------cccccccccccCCCCCCCCcceecccccCCCceeEECCCC
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS--------SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT  102 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  102 (245)
                      ++.++..+.++.++...+.++.. .++...+.        -++..+....     ......+++++|++..+++++++++
T Consensus       106 ~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-----~~~~~~~V~diM~~~~~~~tv~~~~  180 (503)
T 1me8_A          106 SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-----LTQTETKVSDMMTPFSKLVTAHQDT  180 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-----hccccCcHHHHhCCCCCCEEEcCCC
Confidence            45667778888888888776654 44433221        1111111100     1224568999999822399999999


Q ss_pred             CHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       103 ~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      ++.+++++|.+++++.+||+|++|+++|+||.+|+++.
T Consensus       181 sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~  218 (503)
T 1me8_A          181 KLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRS  218 (503)
T ss_dssp             --------------------------------------
T ss_pred             cHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHh
Confidence            99999999999999999999999999999999999975

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.53  E-value=2e-07  Score=70.52  Aligned_cols=58  Identities=31%  Similarity=0.401  Sum_probs=54.1

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCE-EEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR-LPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~-l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      ..+++++|.++++++.+++++.+|+++|.+.+.+. +||+|++ +++|+||..||++.+.
T Consensus        15 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~   73 (157)
T 1o50_A           15 VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSG   73 (157)
T ss_dssp             HHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHH
T ss_pred             cccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHh
Confidence            56789999999999999999999999999999999 9999977 9999999999998865

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.50  E-value=1.8e-07  Score=72.45  Aligned_cols=62  Identities=26%  Similarity=0.502  Sum_probs=56.1

Q ss_pred             cCCcccccccCC----ceEe--cCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEhHHHHHHHHHh
Q 025984          175 NGKMVGDLMTPA----PVVV--RETTNLEDAARLLLETKYRRLPVV--DADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       175 ~~~~v~~~m~~~----~~~v--~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~vGiIt~~dll~~~~~~  236 (245)
                      ...+++++|.+.    ++++  .+++++.+|+++|.+.+.+.+||+  |++|+++|+||..|+++.+...
T Consensus         9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~   78 (185)
T 2j9l_A            9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENA   78 (185)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence            467899999886    7888  999999999999999999999999  7789999999999999987653

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.50  E-value=1.6e-07  Score=78.65  Aligned_cols=105  Identities=13%  Similarity=0.141  Sum_probs=76.4

Q ss_pred             ccccccCCCCchhhhhhhhccC-----C-cccccc-cccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSS-----D-RVSALR-RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~-----~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      .+.++..+.++.++...+.++.     . .+++.. +..+...-....+.   ......+++++|.+  +++++++++++
T Consensus       146 ~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll---~~~~~~~v~~im~~--~~~~v~~~~~l  220 (286)
T 2oux_A          146 EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI---VNDDDTLIADILNE--RVISVHVGDDQ  220 (286)
T ss_dssp             CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHT---TSCTTSBHHHHSBS--CCCCEETTSBH
T ss_pred             CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHH---cCCCCCcHHHHcCC--CCeeecCCCCH
Confidence            5677888999999999987762     1 222222 11111100000001   11246689999988  79999999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      .++++.|.+++.+.+||+|++|+++|+||..|++...
T Consensus       221 ~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i  257 (286)
T 2oux_A          221 EDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  257 (286)
T ss_dssp             HHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999999763

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.38  E-value=4e-07  Score=75.73  Aligned_cols=101  Identities=17%  Similarity=0.227  Sum_probs=75.5

Q ss_pred             ccccccCCCCchhhhhhhhccC------Ccccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECC
Q 025984           32 QLPCLLLSRPGCRVFSVLATSS------DRVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP  100 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~  100 (245)
                      .+.++..+.++.++...+..+.      ..+++..  +..   .+..+...       .....+++++|.+  +++++++
T Consensus       144 ~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~-------~~~~~~v~~im~~--~~~~v~~  214 (278)
T 2yvy_A          144 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIV-------ADPRTRVAEIMNP--KVVYVRT  214 (278)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHH-------SCTTCBSTTTSBS--SCCCEET
T ss_pred             CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhc-------CCCCCcHHHHhCC--CCeEEeC
Confidence            5677888999999999887652      2222221  111   11111100       1245689999987  7999999


Q ss_pred             CCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       101 ~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ++++.++++.|.+++.+.+||+|++|+++|+||..|++...
T Consensus       215 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i  255 (278)
T 2yvy_A          215 DTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  255 (278)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC
T ss_pred             CCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999999999763

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.36  E-value=6.1e-07  Score=81.38  Aligned_cols=61  Identities=25%  Similarity=0.550  Sum_probs=57.0

Q ss_pred             CCcccccccCCceEecCC-CCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHHHHHHHHh
Q 025984          176 GKMVGDLMTPAPVVVRET-TNLEDAARLLLETKYRRLPVVD-ADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~-~~l~~~~~~~~~~~~~~l~Vvd-~~g~~vGiIt~~dll~~~~~~  236 (245)
                      ..++.++|.++++++.++ +++.+++++|.+.+++++||+| ++|+++|+||.+||++.+...
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~  445 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM  445 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc
Confidence            578999999999999999 9999999999999999999999 789999999999999988753

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.31  E-value=1.2e-06  Score=81.17  Aligned_cols=54  Identities=20%  Similarity=0.050  Sum_probs=49.4

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      +++++|++  ++.++++++++.++.+.|.+++.+.+||+ ++|+++|+||.+|+.++
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~  622 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYG  622 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEEC
T ss_pred             ccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHH
Confidence            38899998  89999999999999999999999999999 67999999999999875

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.26  E-value=7e-07  Score=80.16  Aligned_cols=102  Identities=20%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             cccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      ..++..+.++.++...+.++.. .++...+..    ++..+..      .......+++++|+++++++++++++++.++
T Consensus        98 ~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~------~~~~~~~~V~~vMtp~~~~vtv~~~~~l~ea  171 (490)
T 4avf_A           98 PVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLR------VKPNAGDTVAAIMTPKDKLVTAREGTPLEEM  171 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhh------hccccCCcHHHHhccCCCCEEECCCCcHHHH
Confidence            4466677888888888776654 333322211    1111111      1122456899999943348999999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      +++|.+++.+.+||+|++|+++|+||.+|++++
T Consensus       172 ~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~  204 (490)
T 4avf_A          172 KAKLYENRIEKMLVVDENFYLRGLVTFRDIEKA  204 (490)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhh
Confidence            999999999999999999999999999999976

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.19  E-value=1.8e-06  Score=77.20  Aligned_cols=101  Identities=17%  Similarity=0.227  Sum_probs=76.1

Q ss_pred             ccccccCCCCchhhhhhhhccC------Ccccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECC
Q 025984           32 QLPCLLLSRPGCRVFSVLATSS------DRVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP  100 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~  100 (245)
                      .+.++..+.+..++...+.++.      ..++...  +..   .+..+...       .....+++++|++  ++.++++
T Consensus       164 ~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~-------~~~~~~v~dim~~--~~~~v~~  234 (473)
T 2zy9_A          164 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIV-------ADPRTRVAEIMNP--KVVYVRT  234 (473)
T ss_dssp             CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHH-------SCTTSBGGGTSBS--SCCCEES
T ss_pred             CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhc-------CCCCCcHHHHhCC--CCeEEeC
Confidence            5677888999999999987652      1222221  111   11111100       1145689999987  7999999


Q ss_pred             CCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       101 ~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ++++.++++.|.+++.+.+||+|++|+++|+||.+|+....
T Consensus       235 ~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i  275 (473)
T 2zy9_A          235 DTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  275 (473)
T ss_dssp             SSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             CCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHH
Confidence            99999999999999999999999999999999999998753

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.16  E-value=4.3e-07  Score=81.63  Aligned_cols=105  Identities=17%  Similarity=0.166  Sum_probs=68.0

Q ss_pred             cccccccCCCCchhhhhhhhccCC-cccccccc-c----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-S----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      .+..++..+.++.++...+.++.. .++...+. .    ....+..      .......++.++|+++++++++++++++
T Consensus        97 ~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~------~~~~~~~~v~diM~p~~~~vtv~~~~~l  170 (496)
T 4fxs_A           97 THPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR------FVTDLTKSVAAVMTPKERLATVKEGATG  170 (496)
T ss_dssp             BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT------TCCCTTSBGGGTSEEGGGCCEEECC---
T ss_pred             cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh------hcccCCCcHHHHhcCCCCCEEECCCCCH
Confidence            445677889999999999987765 44443321 1    1111111      1122466899999943348999999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      .+++++|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus       171 ~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          171 AEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             -CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence            9999999999999999999999999999999999753

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.05  E-value=1.6e-06  Score=77.86  Aligned_cols=100  Identities=25%  Similarity=0.293  Sum_probs=0.0

Q ss_pred             cccccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      .++.++..+.++.++...+.++.. .++...+..    .+..+.    .  .  -...++.++|++  ++.++++++++.
T Consensus       101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl----~--~--~~~~~v~~im~~--~~~~v~~~~~l~  170 (486)
T 2cu0_A          101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDI----A--A--REGKLVKELMTK--EVITVPESIEVE  170 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHh----c--c--CCCCCHHHHccC--CCeEECCcCcHH
Confidence            345566667777777777665543 333322110    011110    0  0  135688999997  789999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      ++++.|.+++.+.+||+|++|+++|+||.+|+++.
T Consensus       171 eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~  205 (486)
T 2cu0_A          171 EALKIMIENRIDRLPVVDERGKLVGLITMSDLVAR  205 (486)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHh
Confidence            99999999999999999999999999999999975

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.99  E-value=8.3e-07  Score=79.15  Aligned_cols=97  Identities=24%  Similarity=0.217  Sum_probs=0.0

Q ss_pred             cccCCCCchhhhhhhhccCC-ccccccc----c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           35 CLLLSRPGCRVFSVLATSSD-RVSALRR----S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        35 ~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      ++.++.++.++...+.++.. .++.-.+    .    -....+.    .   ..-...+|+++|++  ++++++.+.++.
T Consensus       150 tl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~----r---f~d~~~~V~evMT~--~lvt~~~~~~le  220 (556)
T 4af0_A          150 CLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV----Q---FQDAETPIKSVMTT--EVVTGSSPITLE  220 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccc----c---ccccceEhhhhccc--ceEEecCCCCHH
Confidence            45667777777777776664 3332211    0    1111111    1   01235689999998  899999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      +|.++|.++++..+||||++|+++|+||.+|+.+.
T Consensus       221 eA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          221 KANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHHHccccceeEEccCCcEEEEEEechhhhh
Confidence            99999999999999999999999999999999875

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.98  E-value=4.7e-06  Score=75.28  Aligned_cols=109  Identities=21%  Similarity=0.156  Sum_probs=48.5

Q ss_pred             cccccCCCCchhhhhhhhccCC-ccccccc----ccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR----SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (245)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~  107 (245)
                      ..++..+.++.++...+.++.. .++...+    ..+...-....+..........++.++|++..+++++++++++.++
T Consensus       118 ~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~~~tv~~~~~l~ea  197 (514)
T 1jcn_A          118 PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIELVVAPAGVTLKEA  197 (514)
T ss_dssp             CCCCCC-----------------CEESCC--------CCEECTTTTC----------------CCBCCCCEETTCCSTTT
T ss_pred             CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCCCeEECCCCCHHHH
Confidence            4456667777788877765554 2332211    1111000000001000012456899999863358999999999999


Q ss_pred             HHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      .++|.+++...+||+|++|+++|+|+..|+++..
T Consensus       198 ~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          198 NEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             TTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             HHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence            9999999999999999999999999999998753

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.97  E-value=6.6e-06  Score=73.98  Aligned_cols=104  Identities=21%  Similarity=0.278  Sum_probs=3.9

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccc-c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR-S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      .++++..+.++.++...+.++.. .++...+ .    -+...+...      ......++.++|++..++.++++++++.
T Consensus       104 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~------~~~~~~~v~~im~~~~~~~~v~~~~~l~  177 (494)
T 1vrd_A          104 DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF------EKNLSKKIKDLMTPREKLIVAPPDISLE  177 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh------hcCCCCcHHHHhCCCCCCeEECCCCCHH
Confidence            34556667777777777765543 2222211 1    111111110      0113468999998533589999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +++++|.+++...+||+|++|+++|+|+.+|+++..
T Consensus       178 ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  213 (494)
T 1vrd_A          178 KAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI  213 (494)
T ss_dssp             -------------------------------CHHHH
T ss_pred             HHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhh
Confidence            999999999999999999999999999999999864

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.90  E-value=2.1e-05  Score=70.64  Aligned_cols=104  Identities=18%  Similarity=0.174  Sum_probs=74.4

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccc---ccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR---RSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  103 (245)
                      .+.++..+.++.++...+.++.. .++...   +..    .+..+....      .....+++++|++. ++.+++++++
T Consensus        99 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~------~~~~~~v~~im~~~-~~~~v~~~~~  171 (491)
T 1zfj_A           99 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI------SDYNAPISEHMTSE-HLVTAAVGTD  171 (491)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC------SCSSSBTTTSCCCS-CCCCEETTCC
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh------ccCCCcHHHHcCCC-CCEEECCCCC
Confidence            45566777888888888876654 333322   110    111111000      01356899999841 4788999999


Q ss_pred             HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhc
Q 025984          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (245)
Q Consensus       104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~  142 (245)
                      +.++++.|.+++.+.+||+|++|+++|+||..|+++...
T Consensus       172 l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          172 LETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             HHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence            999999999999999999999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	3e-23
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-21
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-21
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	0.001
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	8e-21
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-20
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-07
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	3e-20
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	4e-20
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	8e-20
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	2e-18
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	0.003
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	1e-17
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	4e-17
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	4e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	6e-17
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	7e-17
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	3e-06
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	9e-17
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	6e-16
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	7e-08
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	3e-04
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-15
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-15
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	3e-15
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	3e-06
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	7e-15
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	2e-14
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	2e-14
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	0.001
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	6e-14
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	1e-13
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	1e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	9e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	3e-13
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	7e-05
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	3e-13
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	0.002
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	3e-12
d1lkvx_	213	a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId:	2e-05

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 90.1 bits (222), Expect = 3e-23
 Identities = 30/154 (19%), Positives = 64/154 (41%), Gaps = 5/154 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + DLL    I
Sbjct: 5   EIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNE---VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAA 200
               ++        +      +     +K   +   K V ++MT   +V      + + A
Sbjct: 63  VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVA 122

Query: 201 RLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
             + +    +LPV+  +G L+G+I   ++++  +
Sbjct: 123 LKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (213), Expect = 1e-21
 Identities = 31/161 (19%), Positives = 67/161 (41%), Gaps = 10/161 (6%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+   +  +LVG V   DL
Sbjct: 4   LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 63

Query: 138 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 197
           +     +   +        +  T  +               + +++  +P  V + T +E
Sbjct: 64  IISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLK---LRNILDLSPFTVTDLTPME 120

Query: 198 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
               +  +   R+  V   +G+L+GIIT+ +V++   Q+ +
Sbjct: 121 IVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMAN 160

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.0 bits (212), Expect = 1e-21
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 14/151 (9%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-VIDDDWKLVGLVSDYDLLALDS 142
              D + T  +L V   +  V +A   LV   +   P         VG+++  D + +  
Sbjct: 14  RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILH 73

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
                        E                     +         V +    +L DA   
Sbjct: 74  RYYKSALVQIYELEEHKIETWRE------------VYLQDSFKPLVCISPNASLFDAVSS 121

Query: 203 LLETKYRRLPVVDAD-GKLVGIITRGNVVRA 232
           L+  K  RLPV+D + G  + I+T   +++ 
Sbjct: 122 LIRNKIHRLPVIDPESGNTLYILTHKRILKF 152

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 177 KMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAA 233
               DL+  +   VV   +  ++ A   L+    R  P+ D+     VG++T  + +   
Sbjct: 13  HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINIL 72

Query: 234 LQ 235
            +
Sbjct: 73  HR 74

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 83.5 bits (205), Expect = 8e-21
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 15/151 (9%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
           V  V   ++ K    VV+  T ++E ++ ++E  +T    +  D KLVG++    LL   
Sbjct: 3   VKDVCKLISLK--PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL--- 57

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                    ++  + +   K   ++M   PV V   T LE+A +
Sbjct: 58  ---------KVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALK 107

Query: 202 LLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           L+++   + +PVVD  G++VG +    ++ A
Sbjct: 108 LMIDNNIQEMPVVDEKGEIVGDLNSLEILLA 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.1 bits (202), Expect = 2e-20
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 21/151 (13%)

Query: 83  YTVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
             +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L 
Sbjct: 6   IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI 65

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                     S+   +                                  +   L     
Sbjct: 66  KGGIYNDLSLSVGEALMRRSD--------------------DFEGVYTCTKNDKLSTIMD 105

Query: 202 LLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
            + + +  R  VVD  G+LVG++T  ++++ 
Sbjct: 106 NIRKARVHRFFVVDDVGRLVGVLTLSDILKY 136

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 229
            L    G  +  +        + TT + D  ++L + +   +P++D +G L+ +    +V
Sbjct: 3   FLKIPIGD-LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 61

Query: 230 VRAALQ 235
           +     
Sbjct: 62  LGLIKG 67

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 82.0 bits (201), Expect = 3e-20
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 3/149 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            VGD M    ++  +  T+T  + L +L + ++  FP +D       L S         +
Sbjct: 12  QVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLL 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                A      E   T +     ++             +  +P  + E T+L+    L 
Sbjct: 70  QRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLF 129

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRA 232
                 R  V    GKLVG++    +  A
Sbjct: 130 SLLGLDRAYVTS-MGKLVGVVALAEIQAA 157

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 81.1 bits (199), Expect = 4e-20
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 22/158 (13%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLLA    
Sbjct: 3   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLA---- 56

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                          +   +     +  S      + ++M      V     L+++A  +
Sbjct: 57  ---------------AQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYM 101

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 241
            + K   LPVV     LVGIIT  + V  A+ +    E
Sbjct: 102 QKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLELQE 138

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.7 bits (198), Expect = 8e-20
 Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 21/150 (14%)

Query: 84  TVGDFM-TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           ++ +    T   + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L +
Sbjct: 10  SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 69

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
                  D S+                    T             +       LE     
Sbjct: 70  EKTYNNLDVSV--------------------TKALQHRSHYFEGVLKCYLHETLEAIINR 109

Query: 203 LLETKYRRLPVVDADGKLVGIITRGNVVRA 232
           L+E +  RL VVD    + GI++  ++++A
Sbjct: 110 LVEAEVHRLVVVDEHDVVKGIVSLSDILQA 139

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 76.3 bits (187), Expect = 2e-18
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 29/152 (19%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           TV   +  K   +  + P  +V  A++ +    I    V+ D+   VG++++ D      
Sbjct: 3   TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL-VGILTERD------ 55

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
                                  +   L        V ++MT     V      ED   L
Sbjct: 56  --------------------FSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMAL 95

Query: 203 LLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
           + E + R LPV+D DGK++G+++ G++V+ A+
Sbjct: 96  ITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 177 KMVGDLMTP---APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
           K V  L+       V +    ++ +A + +       L V+  D KLVGI+T  +  
Sbjct: 2   KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFS 57

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 74.3 bits (181), Expect = 1e-17
 Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 21/155 (13%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +   M       ++     +  A + + E  I    V ++  +                
Sbjct: 2   NIETLMIKN--PPILSKEDRLGSAFKKINEGGIGRIIVANEKIE---------------- 43

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
              G            ++   +  Q  L   +   + D MTP PV V  T++   A  ++
Sbjct: 44  ---GLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIM 100

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
           +   +  LPVVD + K VGI+T    +     +  
Sbjct: 101 VTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDE 135

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 73.3 bits (179), Expect = 4e-17
 Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 30/152 (19%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +  +MT   +L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D++    +
Sbjct: 6   PIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 63

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
            G                                 V  +MT   +     T L +  R +
Sbjct: 64  PG---------------------------LPYDIPVERIMTRNLITANVNTPLGEVLRKM 96

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
            E + + + + + +GK+VGI T  +++ A+ +
Sbjct: 97  AEHRIKHILIEE-EGKIVGIFTLSDLLEASRR 127

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 16/64 (25%), Positives = 37/64 (57%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
           +   MT   + V+ +T++++A+RL++E     L V++ DG +VG  T+ +++R  +    
Sbjct: 7   IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL 66

Query: 239 ATEM 242
             ++
Sbjct: 67  PYDI 70

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 72.7 bits (177), Expect = 6e-17
 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 23/155 (14%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
           ++ V  FM+T  ++  +     +D+A+++++ +     PVIDDD K+VG           
Sbjct: 1   IFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVG----------- 47

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                      +              +       GK+V D+M    V + E  ++  AA 
Sbjct: 48  ----------IVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAA 97

Query: 202 LLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236
            ++  +   L +++ D  + GIIT  +++ A   I
Sbjct: 98  EMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI 132

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 72.2 bits (176), Expect = 7e-17
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 29/149 (19%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D++     
Sbjct: 2   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLA 59

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
           +G                             N    G+L   +   V    ++++   ++
Sbjct: 60  AGL--------------------------DPNTATAGELARDSIYYVDANASIQEMLNVM 93

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRA 232
            E + RR+PV+  + +LVGI+T  ++ R 
Sbjct: 94  EEHQVRRVPVIS-EHRLVGIVTEADIARH 121

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 16/64 (25%), Positives = 25/64 (39%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
             D+M      V E   L  AA+ + E     LP+   D +L G++T  ++V   L    
Sbjct: 3   ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL 62

Query: 239 ATEM 242
               
Sbjct: 63  DPNT 66

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 73.5 bits (179), Expect = 9e-17
 Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 13/165 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T  D + T   L V   T  V  +L +L    I   P+ D +        +     L   
Sbjct: 21  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMA 73

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                 +  +LL     +     + P  + V    +L DA   +
Sbjct: 74  DFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAM 133

Query: 204 LETKYRRLPVVDADG-----KLVGIITRGNVVRA-ALQIKHATEM 242
            +++ RR+P++D DG      +V ++T+  +++  ++  K    +
Sbjct: 134 SKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAML 178

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 69.8 bits (170), Expect = 6e-16
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 31/139 (22%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSM 153
           V+ P   V +  E        G P+ D      +LVG++S  D+  L             
Sbjct: 8   VLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKE----------- 56

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 213
               +   +   E+                    VV      L++A  +L  +K  +LP+
Sbjct: 57  ----EEHDRFLEEIMT-------------KREDLVVAPAGITLKEANEILQRSKKGKLPI 99

Query: 214 VDADGKLVGIITRGNVVRA 232
           V+ + +LV II R ++ + 
Sbjct: 100 VNENDELVAIIARTDLKKN 118

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 47.8 bits (113), Expect = 7e-08
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 76  AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135
                    + + MT +E+L V     T+ EA EIL   +    P+++++ +LV +++  
Sbjct: 54  LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIART 113

Query: 136 DLL 138
           DL 
Sbjct: 114 DLK 116

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 183 MTPAPVVVRETTNLEDAARLLLETKYRRLPVV---DADGKLVGIITRGNVVRAALQIKHA 239
               PVV+     + D         +  +P+        +LVGII+  ++     +    
Sbjct: 2   FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDR 61

Query: 240 TEM 242
              
Sbjct: 62  FLE 64

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 69.5 bits (169), Expect = 1e-15
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 28/149 (18%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+         
Sbjct: 4   RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSE--------- 52

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                        K +   +  +M      V+   +++D A  L
Sbjct: 53  -----------------RSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYL 95

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRA 232
            E    R  VVD  G++VGI+T  ++ R 
Sbjct: 96  SENGLERCAVVDDPGRVVGIVTLTDLSRY 124

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 13/64 (20%), Positives = 28/64 (43%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
           V  +M      V   T + DA +++ E     L V D +G  VG+++  ++++  +    
Sbjct: 5   VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK 64

Query: 239 ATEM 242
             + 
Sbjct: 65  KPDE 68

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 68.7 bits (167), Expect = 1e-15
 Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 31/150 (20%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V D M T  ++  +  T ++++ L   VE       V+ +                  I 
Sbjct: 2   VEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGV-------------RVGIV 46

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
            +     ++    D                    V ++M    V +     +++AA  ++
Sbjct: 47  TTWDVLEAIAEGDDLAEV---------------KVWEVMERDLVTISPRATIKEAAEKMV 91

Query: 205 ETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
           +    RL V + D +++G+I+  +++RA +
Sbjct: 92  KNVVWRLLVEE-DDEIIGVISATDILRAKM 120

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.0 bits (165), Expect = 3e-15
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 35/151 (23%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+           
Sbjct: 3   VKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNK---------- 50

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
                                  + LL       V + ++     V E  N+  A  L L
Sbjct: 51  -----------------------EDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFL 87

Query: 205 ETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
           E +   LPVVD + +L G ++  + + A ++
Sbjct: 88  EHQEPYLPVVDEEMRLKGAVSLHDFLEALIE 118

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.0 bits (100), Expect = 3e-06
 Identities = 9/64 (14%), Positives = 26/64 (40%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
           V   +T    +V E+  + +    + + +     V D +G   G++ + +++   L    
Sbjct: 3   VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSV 62

Query: 239 ATEM 242
             ++
Sbjct: 63  FNKV 66

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 67.7 bits (164), Expect = 7e-15
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 85  VGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           +      T   L      T V + +++L EK I+  P+++ +  L+ +    D++ L   
Sbjct: 3   LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                 D S+   +                                 R T  L+     +
Sbjct: 63  GDYSNLDLSVGEALLKRPA--------------------NFDGVHTCRATDRLDGIFDAI 102

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ 245
             ++  RL VVD + KL GI++  +++   +  K  T    +
Sbjct: 103 KHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPE 144

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 65.7 bits (159), Expect = 2e-14
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 35/151 (23%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V   MT       +    T + ALE+  + ++  FPV++ + K                 
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGK----------------- 43

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204
                                 V+++L   + + +  L+     VV+E   L+ AA+L+L
Sbjct: 44  ----------------LVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLML 87

Query: 205 ETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235
           E  YRR+ VVD+ GK VGI+T G+++R    
Sbjct: 88  EYDYRRVVVVDSKGKPVGILTVGDIIRRYFA 118

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 65.6 bits (159), Expect = 2e-14
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 40/154 (25%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
           T G  MTT  E   +    TV  A+ +L  +      I    V+D +  LVG++S     
Sbjct: 2   TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVIS----- 54

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
                                       ++ L+   +  ++ D++    + V    + ED
Sbjct: 55  ----------------------------LRDLIVNDDDTLIADILNERVISVHVGDDQED 86

Query: 199 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
            A+ + +  +  +PV D D  L+GI+T  +++  
Sbjct: 87  VAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV 120

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLL-----LETKYRRLPVVDADGKLVGIITRGNVVRAA 233
            G +MT   V +     +  A  +L     +      + VVD +  LVG+I+  +++   
Sbjct: 3   AGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND 62

Query: 234 LQIKHATEM 242
                A  +
Sbjct: 63  DDTLIADIL 71

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 64.7 bits (156), Expect = 6e-14
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 24/149 (16%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+       ++SI
Sbjct: 3   TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNM--IMNSI 60

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
            G  R +     ++        ++ +L           ++                    
Sbjct: 61  FGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVI------------------- 101

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRA 232
                  + V + +    GI TR  V++ 
Sbjct: 102 ---NNGFVCVENDEQVFEGIFTRRVVLKE 127

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 63.7 bits (154), Expect = 1e-13
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 31/149 (20%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V ++M T  ++  V     +++  +++ EK I    V+D +  +  +     + A+   
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKG 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
                                        K+      + MT + + +RE + +  A  L+
Sbjct: 63  -----------------------------KSLETKAEEFMTASLITIREDSPITGALALM 93

Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRA 232
            +   R LPVVD  G L GII+  ++ RA
Sbjct: 94  RQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 214
           ++V + M    + V +   L D A+++ E     + VV
Sbjct: 4   EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVV 41

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 36.0 bits (82), Expect = 9e-04
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSI 143
            ++ +  I   PV+DD   L G++S  D+  A+D +
Sbjct: 91  ALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 63.3 bits (153), Expect = 3e-13
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 42/163 (25%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
             G  MT   E   V+   TV+E L  L         I    V+D+  +L G++S  DL+
Sbjct: 2   EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI 59

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
             D                                     V ++M P  V VR  T+ E+
Sbjct: 60  VAD---------------------------------PRTRVAEIMNPKVVYVRTDTDQEE 86

Query: 199 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 241
            ARL+ +  +  LPVVD +G+LVGI+T  +V+        ATE
Sbjct: 87  VARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL--EAEATE 127

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 39.4 bits (91), Expect = 7e-05
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKY-----RRLPVVDADGKLVGIITRGNVVRAA 233
            G LMTP  V VRE   +E+  R L            + VVD  G+L G+++  +++ A 
Sbjct: 3   AGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD 62

Query: 234 LQIKHATEM 242
            + + A  M
Sbjct: 63  PRTRVAEIM 71

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 62.6 bits (151), Expect = 3e-13
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 33/138 (23%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMF 154
            + P   V EA E++   RI+G P+++     KLVG++++ D+  +              
Sbjct: 9   FLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS------------- 55

Query: 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 214
                               N  +   + +   V     T+LE A R+L E +  +LP+V
Sbjct: 56  ------------------DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLV 97

Query: 215 DADGKLVGIITRGNVVRA 232
           D  G+L G+IT  ++ + 
Sbjct: 98  DNSGRLSGLITIKDIEKV 115

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 183 MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA--DGKLVGIITRGNVVRA 232
           +   P  +     + +A  L+   +   +P+V+   + KLVGIIT  ++   
Sbjct: 3   VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI 54

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 60.0 bits (144), Expect = 3e-12
 Identities = 18/151 (11%), Positives = 48/151 (31%), Gaps = 33/151 (21%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALD 141
              + +        +  T T+ E    L + R+    +    +  + V            
Sbjct: 2   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVA----------- 48

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                  + ++ +  + +       +  +P+ V +T  +  AA 
Sbjct: 49  ------------------VVSERDILRAVAQRLDLDGPAMPIANSPITVLDTDPVHVAAE 90

Query: 202 LLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
            +     R + VV+ +G+LVG+++  ++   
Sbjct: 91  KMRRHNIRHVVVVNKNGELVGVLSIRDLCFE 121

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]} Length = 213

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 11/87 (12%), Positives = 35/87 (40%)

Query: 150 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR 209
           +  +  E+      F ++ KL  ++   ++ ++ T    +  +  + E   ++      R
Sbjct: 110 NPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKR 169

Query: 210 RLPVVDADGKLVGIITRGNVVRAALQI 236
              ++  + + +G +   +V  A  +I
Sbjct: 170 AAALLKDELEYMGPVRLKDVEEAQQKI 196

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.9
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.9
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.89
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.89
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.89
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.89
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.89
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.89
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.89
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.88
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.88
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.88
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.86
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.86
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.86
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.85
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.84
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.84
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.83
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.82
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.82
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.81
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.8
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.8
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.77
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.76
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.1
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.05
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.04
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.04
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.03
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.02
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.01
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.98
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.98
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.96
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.94
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.92
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.91
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.91
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.84
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.83
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.81
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.8
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.8
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.78
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.67
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.64
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.64
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.42
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.41
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.36
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	89.16

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=5e-23  Score=150.12  Aligned_cols=119  Identities=27%  Similarity=0.362  Sum_probs=111.2

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      +.|+++|++  +++++++++++.+|++.|.+.+++.+||+|++|+++|+++.+|++++.                     
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~---------------------   57 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD---------------------   57 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC---------------------
T ss_pred             CCchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhh---------------------
Confidence            368899998  899999999999999999999999999999999999999999998642                     


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                  ...++.++|..+++++++++++.+++++|.+.+...+||+|++|+++|+||..|+++++.++
T Consensus        58 ------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          58 ------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             ------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             ------------ccccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHh
Confidence                        25789999999999999999999999999999999999999999999999999999998875

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.90  E-value=2e-23  Score=153.64  Aligned_cols=118  Identities=28%  Similarity=0.434  Sum_probs=108.9

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhc-----CCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~-----~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      |++.+|++  ++.++++++++.+|++.|+++     +.+.+||+|++|+++|+++..++....                 
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~-----------------   62 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND-----------------   62 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC-----------------
T ss_pred             ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccc-----------------
Confidence            68899999  999999999999999999876     368999999999999999999998541                 


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                      ...++.++|.++++++.+++++.+|+++|.+++++++||||++|+++|+||.+||++++.++
T Consensus        63 ----------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          63 ----------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             ----------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ----------------ccEEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHH
Confidence                            36789999999999999999999999999999999999999999999999999999988654

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=4.8e-24  Score=155.86  Aligned_cols=119  Identities=34%  Similarity=0.521  Sum_probs=91.9

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      ++|+++|++  +++++++++++.+|.+.|.+++++.+||+|++|+++|+|+.+|++...                     
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~---------------------   57 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP---------------------   57 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-------------------------
T ss_pred             CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhh---------------------
Confidence            468899998  899999999999999999999999999999999999999999998642                     


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                  ...++.++|.++++++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++++.+.
T Consensus        58 ------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2          58 ------------DEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             ------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             ------------cccchhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhH
Confidence                        25678899999999999999999999999999999999999999999999999999887654

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.89  E-value=3.8e-23  Score=154.37  Aligned_cols=136  Identities=29%  Similarity=0.342  Sum_probs=114.4

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      ++|+|+|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+..|++++........              
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~--------------   65 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRS--------------   65 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC----------------
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhh--------------
Confidence            478999998  8999999999999999999999999999999999999999999987642111000              


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT  240 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~  240 (245)
                           ..........++.++|.++++++++++++.+|+++|.+++.+++||+| +|+++|+||..|+++++....+..
T Consensus        66 -----~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~~~~~~  137 (139)
T d2o16a3          66 -----AQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLELQ  137 (139)
T ss_dssp             ------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHHHHHHH
T ss_pred             -----hcccccccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHHhhc
Confidence                 000012246789999999999999999999999999999999999999 589999999999999999876543

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=4.3e-23  Score=154.65  Aligned_cols=126  Identities=27%  Similarity=0.335  Sum_probs=111.9

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      ++|+++|++  ++.++++++++.+|++.|.+++++.+||+|++|+++|+++..|+++.....+.                
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~----------------   64 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK----------------   64 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC----------------
T ss_pred             EEHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcc----------------
Confidence            589999999  89999999999999999999999999999999999999999999764321111                


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                .....+++++|.++++++.+++++.+++++|.+++.+++||+|++|+++|+||..||++++.+.
T Consensus        65 ----------~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~~  128 (142)
T d1pvma4          65 ----------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRA  128 (142)
T ss_dssp             ----------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCHH
T ss_pred             ----------cccccccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhhh
Confidence                      1135678999999999999999999999999999999999999999999999999999987653

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.89  E-value=1.3e-22  Score=149.14  Aligned_cols=125  Identities=26%  Similarity=0.423  Sum_probs=112.1

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ....|+++|++  +++++++++++.+|.++|.+++++.+||+|+ |+++|+++.+|++++...                 
T Consensus         2 ~~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~-~~~~Givt~~dl~~~~~~-----------------   61 (127)
T d2ef7a1           2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGK-----------------   61 (127)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHT-----------------
T ss_pred             CccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeecc-cchhhhcchhHHHHHHHh-----------------
Confidence            45689999998  8999999999999999999999999999985 789999999999876321                 


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                 ......++.++|.+++.++.+++++.++++.|.+.+.+++||+|++|+++|+||..||++++.+.
T Consensus        62 -----------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~~  126 (127)
T d2ef7a1          62 -----------GKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (127)
T ss_dssp             -----------TCCTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             -----------hccccchhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhh
Confidence                       11235788999999999999999999999999999999999999999999999999999998763

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=1.4e-23  Score=153.49  Aligned_cols=122  Identities=25%  Similarity=0.443  Sum_probs=106.7

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      +|++|+|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|++......+.                
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~----------------   62 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL----------------   62 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC----------------
T ss_pred             CCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCC----------------
Confidence            478999998  89999999999999999999999999999999999999999999764221110                


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                                ......+.++|.+++.++.+++++.+++++|.+++++++||+| +|+++|+||..||++++
T Consensus        63 ----------~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          63 ----------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             ----------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHTC
T ss_pred             ----------CcccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhhC
Confidence                      1124567889999999999999999999999999999999999 58999999999999864

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=3.2e-23  Score=155.75  Aligned_cols=121  Identities=35%  Similarity=0.504  Sum_probs=111.0

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcC-----CceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~-----~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      +++++|++  ++.++++++|+.+|++.|++++     ...+||+|++|+++|+++.+|+....                 
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~-----------------   62 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD-----------------   62 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSC-----------------
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcc-----------------
Confidence            68999999  9999999999999999998763     67899999999999999999998642                 


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  238 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~  238 (245)
                                      ...++.++|.+++.++.+++++.+|+++|.+++++++||||++|+++|+||.+||++++.+...
T Consensus        63 ----------------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~~  126 (144)
T d2yvxa2          63 ----------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEAT  126 (144)
T ss_dssp             ----------------TTCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHHH
T ss_pred             ----------------cccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHhH
Confidence                            2578999999999999999999999999999999999999999999999999999999887665


Q ss_pred             H
Q 025984          239 A  239 (245)
Q Consensus       239 ~  239 (245)
                      +
T Consensus       127 e  127 (144)
T d2yvxa2         127 E  127 (144)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=5.9e-23  Score=156.08  Aligned_cols=151  Identities=21%  Similarity=0.301  Sum_probs=112.3

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCC-ccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF-PEVDS  159 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~-~~~~~  159 (245)
                      .+++|.++|.+  +++++++++++.+|++.|.+++++.+||+|++|+++|+++..|++................ .....
T Consensus         2 ~~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (156)
T d2yzqa1           2 KGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEW   79 (156)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC---------------
T ss_pred             CCCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhh
Confidence            46789999998  8999999999999999999999999999999999999999999987533211111100000 00000


Q ss_pred             cccch--hHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          160 TWKTF--NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       160 ~~~~~--~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                      .+...  .............++.++|.+++.++.+++++.++++.|.+.+.+++||+|++|+++|+||++||++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          80 ILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             -----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence            01100  011122223456789999999999999999999999999999999999999999999999999999875

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=2.5e-22  Score=148.59  Aligned_cols=125  Identities=26%  Similarity=0.405  Sum_probs=111.4

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      .+|+++|+.  ++.++++++++.+|++.|.+++++.+||+|++|+++|+|+..|+++.....+                 
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~-----------------   65 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPG-----------------   65 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC-----------------
T ss_pred             CcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhcc-----------------
Confidence            489999998  8999999999999999999999999999999999999999999987532111                 


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                                .....+++++|.++++++.+++++.+++++|.+++.+++||++ +|+++|+||.+|+++++.+..
T Consensus        66 ----------~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~l  129 (132)
T d2yzia1          66 ----------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRL  129 (132)
T ss_dssp             ----------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCCS
T ss_pred             ----------CccceeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence                      1135789999999999999999999999999999999999876 699999999999999987653

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=6.9e-23  Score=151.60  Aligned_cols=130  Identities=19%  Similarity=0.261  Sum_probs=111.5

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      .+|+++|.+.++++++.+++++.+|++.|.+++++++||+|++|+++|+++..|++++......            ..| 
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~------------~~~-   68 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER------------IEF-   68 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS------------BCG-
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccc------------ccc-
Confidence            4889999887789999999999999999999999999999999999999999999986431110            000 


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                               ......++.++|.++++++.+++++.+++.+|.+++  .+||+|++|+++|+||.+|+++++.+.
T Consensus        69 ---------~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          69 ---------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             ---------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ---------cccccccccccccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence                     122467889999999999999999999999998764  599999999999999999999998764

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.88  E-value=1e-22  Score=152.10  Aligned_cols=137  Identities=24%  Similarity=0.375  Sum_probs=117.4

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      ++|+++|++  ++.++++++|+.+|.+.|.+++++.+||+|+++++.|+++..|+.+.......                
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~----------------   63 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVD----------------   63 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH----------------
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhcccc----------------
Confidence            489999999  89999999999999999999999999999999999999999999875310000                


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHhhh
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEM  242 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~~~  242 (245)
                           ..........++.++|.++++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++.+.....+.
T Consensus        64 -----~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~~~~~~  138 (141)
T d3ddja1          64 -----KLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVMEKF  138 (141)
T ss_dssp             -----HTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             -----ccccccccCCCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHHhhhhh
Confidence                 000012246789999999999999999999999999999999999999999999999999999999987765543

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.86  E-value=1e-21  Score=144.30  Aligned_cols=123  Identities=28%  Similarity=0.472  Sum_probs=106.8

Q ss_pred             eecccccCC-CceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        84 ~v~~im~~~-~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      ||+++|..+ .+++++++++++.+|+++|.+++++++||++ +|+++|++|.+|++++....+.                
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~----------------   65 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK----------------   65 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS----------------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcc----------------
Confidence            788998742 2799999999999999999999999999998 5799999999999865322111                


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                                .....++.++|.+++.++.+++++.+++++|.+.+++++||+| +|+++|+||..|+++++.
T Consensus        66 ----------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          66 ----------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             ----------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ----------cccceeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence                      1135689999999999999999999999999999999999999 699999999999999864

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.86  E-value=1.7e-21  Score=148.10  Aligned_cols=150  Identities=20%  Similarity=0.228  Sum_probs=115.5

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC--CCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~--~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~  157 (245)
                      ..+++|+|+|++  +++++++++++.++++.|.+++++.+||+|+  ++.++|+++..|++.++............  ..
T Consensus         8 ~~~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~--~~   83 (160)
T d2d4za3           8 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPF--EE   83 (160)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCC--CS
T ss_pred             ccceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccch--hh
Confidence            347799999998  9999999999999999999999999999985  47899999999998764321110000000  00


Q ss_pred             cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      .....................+.++|.+.++++.+++++.+++++|.+.+++++||++ +|+++|+||++||++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          84 MLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             CCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence            1111111222222334456667889999999999999999999999999999999998 699999999999999874

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=1.1e-21  Score=142.62  Aligned_cols=119  Identities=23%  Similarity=0.363  Sum_probs=105.5

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccc
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (245)
                      .|+++|++  +++++++++|+.+|++.|.+++++.+||+++ |+++|+|+.+||+++.....                  
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~-~~~~Gvit~~Di~~~l~~~~------------------   59 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKE-GVRVGIVTTWDVLEAIAEGD------------------   59 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEET-TEEEEEEEHHHHHHHHHHTC------------------
T ss_pred             ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEeC-CcEEEEEEeeeccccccccc------------------
Confidence            37899998  8999999999999999999999999999985 89999999999997642111                  


Q ss_pred             hhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984          164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  233 (245)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~  233 (245)
                               ...+.++.++|.++++++++++++.+|+++|.+++.+++||++ +|+++|+||.+|++++.
T Consensus        60 ---------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          60 ---------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             ---------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ---------cccceeEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence                     1235689999999999999999999999999999999999987 68999999999999874

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.85  E-value=7.2e-21  Score=139.48  Aligned_cols=109  Identities=28%  Similarity=0.505  Sum_probs=95.6

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcC--CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHH
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLL  171 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~--~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (245)
                      +++++++++++.+|+++|.+++++.+||+|+  +|+++|+||.+|+..+..                             
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~-----------------------------   56 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD-----------------------------   56 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC-----------------------------
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhc-----------------------------
Confidence            5789999999999999999999999999996  688999999999987521                             


Q ss_pred             hhccCCc-ccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          172 SKTNGKM-VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       172 ~~~~~~~-v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                         .+.+ ...+|..+++++.+++++.+|+++|.+.+++++||||++|+++|+||++|+++++.
T Consensus        57 ---~~~~~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          57 ---YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             ---SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ---cCCceeeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence               1222 33445667889999999999999999999999999999999999999999999865

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.84  E-value=8.8e-21  Score=139.80  Aligned_cols=125  Identities=18%  Similarity=0.232  Sum_probs=106.0

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEE--cCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vv--d~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ++|+++|++  +++++++++++.++++.|.+++.+++||+  |++++++|+++..|+.++....                
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~----------------   62 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR----------------   62 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT----------------
T ss_pred             CCHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc----------------
Confidence            478999998  89999999999999999999999999999  4568899999999999763211                


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  238 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~  238 (245)
                                   .........+..+++++.+++++.+++++|.+++++++||+|++|+++|+||.+||++++....+
T Consensus        63 -------------~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~l~~  127 (131)
T d2riha1          63 -------------LDLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLE  127 (131)
T ss_dssp             -------------CCTTSBSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHHHHH
T ss_pred             -------------cccccccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHHHHh
Confidence                         11223334455568899999999999999999999999999999999999999999998776554

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=3.5e-21  Score=142.70  Aligned_cols=133  Identities=24%  Similarity=0.321  Sum_probs=110.8

Q ss_pred             ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      ++|+++|.+  +++++.+++++.+|++.|.+++++.+||+|+  +++|+++..|+..+......                
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~----------------   60 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCK----------------   60 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC-----------------
T ss_pred             CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccc----------------
Confidence            468999998  8999999999999999999999999999975  69999999999876421110                


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                      . .............+++++|..++.++.+++++.+|+++|.+++++++||+|++|+++|+||++|+++++.+.
T Consensus        61 ~-~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~l  133 (135)
T d3ddja2          61 D-SCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDL  133 (135)
T ss_dssp             ---CCHHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGS
T ss_pred             c-chhhhhccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHHh
Confidence            0 000111122346789999999999999999999999999999999999999999999999999999987653

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=1.4e-20  Score=140.95  Aligned_cols=138  Identities=24%  Similarity=0.396  Sum_probs=107.4

Q ss_pred             eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCC-CCCCCCCcccccccc
Q 025984           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG-RADNSMFPEVDSTWK  162 (245)
Q Consensus        84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~-~~~~~~~~~~~~~~~  162 (245)
                      .+.++|..  +++++.+++++.+|++.|.+++++.+||+|++|+++|+|+..||..+....... ........       
T Consensus         5 ~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~-------   75 (145)
T d1o50a3           5 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIR-------   75 (145)
T ss_dssp             HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------------
T ss_pred             EhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHH-------
Confidence            56778888  899999999999999999999999999999999999999999998753210000 00000000       


Q ss_pred             chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                            .........++.++|.. +.++.+++++.+|+++|.+.+.+++||||++|+++|+||.+||++++.+..
T Consensus        76 ------~~~~~~~~~~~~~~~~~-~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~~  143 (145)
T d1o50a3          76 ------SSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  143 (145)
T ss_dssp             -------CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             ------hhhhhccccCHHHHcCC-CEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhcC
Confidence                  00011123456666654 788999999999999999999999999999999999999999999988753

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=8.5e-20  Score=136.73  Aligned_cols=135  Identities=21%  Similarity=0.316  Sum_probs=106.1

Q ss_pred             cceecccccC-CCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984           82 VYTVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (245)
Q Consensus        82 ~~~v~~im~~-~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (245)
                      ..++++++.. ..+++++.+++++.+|++.|.+++++.+||+|++|+++|+|+..|+...........    ..      
T Consensus         8 ~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~----~~------   77 (145)
T d2v8qe1           8 SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN----LD------   77 (145)
T ss_dssp             GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCC----CS------
T ss_pred             hCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccc----hh------
Confidence            3466666432 127899999999999999999999999999999999999999999987643211000    00      


Q ss_pred             ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                       .   ...      ........|..++.++.+++++.+++++|.+++.+++||+|++|+++|+||.+||++++...
T Consensus        78 -~---~v~------~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~~  143 (145)
T d2v8qe1          78 -V---SVT------KALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLT  143 (145)
T ss_dssp             -S---BHH------HHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSS
T ss_pred             -h---hhh------hccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHhc
Confidence             0   000      01233455677888999999999999999999999999999999999999999999998753

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.82  E-value=7.6e-20  Score=138.35  Aligned_cols=128  Identities=20%  Similarity=0.277  Sum_probs=103.7

Q ss_pred             eecccccC-CCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984           84 TVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (245)
Q Consensus        84 ~v~~im~~-~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
                      |+++++.. .++++++.+++++.+|++.|.+++++.+||+|++|+++|+++..|+..+......                
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~----------------   65 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY----------------   65 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCG----------------
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccc----------------
Confidence            55666542 2379999999999999999999999999999999999999999999876421110                


Q ss_pred             chhHHHHHHhhccCCcccc------cccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          163 TFNEVQKLLSKTNGKMVGD------LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                                .....++.+      .+..++.++.+++++.+++++|.+++.+++||||++|+++|+||++|+++++...
T Consensus        66 ----------~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          66 ----------SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             ----------GGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred             ----------cccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcC
Confidence                      001223333      3445677899999999999999999999999999999999999999999998754


Q ss_pred             H
Q 025984          237 K  237 (245)
Q Consensus       237 ~  237 (245)
                      .
T Consensus       136 ~  136 (153)
T d2ooxe2         136 K  136 (153)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=7.8e-20  Score=136.21  Aligned_cols=130  Identities=22%  Similarity=0.333  Sum_probs=98.1

Q ss_pred             ceeccc---ccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984           83 YTVGDF---MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (245)
Q Consensus        83 ~~v~~i---m~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (245)
                      .+++++   |..  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+++..|++++........    ...    
T Consensus         6 ~~i~~l~~~~~~--~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~----~~~----   75 (140)
T d2nyca1           6 IPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYND----LSL----   75 (140)
T ss_dssp             SBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC--------CCS----
T ss_pred             CcHHHhCCccCC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccc----ccc----
Confidence            345543   445  8999999999999999999999999999999999999999999998643111100    000    


Q ss_pred             cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                            ....      .......+..+++++++++++.+++++|.+.+.+++||||++|+++|+||.+|+++++.
T Consensus        76 ------~~~~------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          76 ------SVGE------ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             ------BHHH------HHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------chhh------hhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence                  0000      01122334556789999999999999999999999999999999999999999999975

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.2e-20  Score=140.39  Aligned_cols=154  Identities=20%  Similarity=0.294  Sum_probs=108.7

Q ss_pred             ceecccccCCCc----eeEECCCCCHHHHHHHHHhcCCceeEEE--cCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcc
Q 025984           83 YTVGDFMTTKEE----LHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (245)
Q Consensus        83 ~~v~~im~~~~~----~~~v~~~~~v~~~~~~~~~~~~~~~~Vv--d~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~  156 (245)
                      +.++|+|.+...    .+.+.+++++.++.++|.+++++++||+  +++|+++|+|+.+||..++............. .
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~-~   81 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST-S   81 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTT-C
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccc-h
Confidence            357789976421    2445678899999999999999999999  45688999999999997653111000000000 0


Q ss_pred             ccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                      .  .+................++.++|.+++.++.+++++.+++++|.+.+.+++||+| +|+++|+||++|+++++.+.
T Consensus        82 ~--~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1          82 I--IYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             E--EECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred             h--hhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence            0  00000000000012235678999999999999999999999999999999999988 78999999999999999876


Q ss_pred             HHHh
Q 025984          237 KHAT  240 (245)
Q Consensus       237 ~~~~  240 (245)
                      .++.
T Consensus       159 ~~~~  162 (169)
T d2j9la1         159 ANQD  162 (169)
T ss_dssp             CC--
T ss_pred             hcCC
Confidence            5443

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=4e-20  Score=140.62  Aligned_cols=145  Identities=19%  Similarity=0.200  Sum_probs=109.4

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC-CCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~-~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~  158 (245)
                      +...++.|+|.+..++++++.++++.+|++.|.+++++++||+|+ +++++|+++..|+..............       
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~-------   82 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQ-------   82 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTT-------
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccch-------
Confidence            345689999976557899999999999999999999999999975 588999999999987632100000000       


Q ss_pred             ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHHHHHHHHh
Q 025984          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD-ADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~vGiIt~~dll~~~~~~  236 (245)
                      ..+......     ........++|..+++++++++++.+++++|.+++.+++||+| ++|+++|+||.+||++++...
T Consensus        83 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~  156 (159)
T d2v8qe2          83 IYELEEHKI-----ETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  156 (159)
T ss_dssp             CCCGGGCBH-----HHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             hhhhhhhhc-----ccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHH
Confidence            000000000     0011234567788889999999999999999999999999998 468999999999999998653

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.77  E-value=1.9e-19  Score=139.43  Aligned_cols=152  Identities=22%  Similarity=0.277  Sum_probs=111.4

Q ss_pred             CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC-CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (245)
Q Consensus        81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~-~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (245)
                      ...++.|+|.+..++++++++.++.+|++.|.+++++++||+|+ +++++|+++..|+..++.......    .......
T Consensus        18 ~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~----~~~~~~~   93 (179)
T d2ooxe1          18 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSS----SFPEAIA   93 (179)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHC----SCGGGGG
T ss_pred             cCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccc----cchhhhh
Confidence            45589999986557999999999999999999999999999985 588999999999987532100000    0000000


Q ss_pred             cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC-----cEEEEEEhHHHHHHHH
Q 025984          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG-----KLVGIITRGNVVRAAL  234 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g-----~~vGiIt~~dll~~~~  234 (245)
                      .+.......    ..........|.++++++.+++++.+++.+|.+++.+++||+|++|     +++|+||.+||++++.
T Consensus        94 ~~~~~~~~~----~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1          94 EIDKFRLLG----LREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             GGGGSBHHH----HHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             hhhccchhh----hcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence            000000000    0011234456788899999999999999999999999999998654     6999999999999998


Q ss_pred             HhHHHh
Q 025984          235 QIKHAT  240 (245)
Q Consensus       235 ~~~~~~  240 (245)
                      ...+..
T Consensus       170 ~~~~~~  175 (179)
T d2ooxe1         170 MNCKET  175 (179)
T ss_dssp             TTCGGG
T ss_pred             HhhhHh
Confidence            765544

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.76  E-value=1.9e-20  Score=136.08  Aligned_cols=109  Identities=26%  Similarity=0.481  Sum_probs=58.9

Q ss_pred             ceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHH
Q 025984           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (245)
Q Consensus        94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (245)
                      +++++.+++++.+|.++|.+++++++||+|+   +|+++|+||.+|+..+..                            
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~----------------------------   56 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKE----------------------------   56 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC-----------------------------------------
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhc----------------------------
Confidence            5679999999999999999999999999985   578999999999864311                            


Q ss_pred             HhhccCCcccccc--cCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984          171 LSKTNGKMVGDLM--TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  232 (245)
Q Consensus       171 ~~~~~~~~v~~~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~  232 (245)
                        .....++..+|  .+++.++.+++++.+|+++|.+++++++||+|++|+++|+||++|+++.
T Consensus        57 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          57 --EEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             -----------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             --cccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence              11123444444  4467889999999999999999999999999999999999999999986

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.10  E-value=6.4e-11  Score=85.66  Aligned_cols=106  Identities=14%  Similarity=0.153  Sum_probs=77.4

Q ss_pred             cccccccCCCCchhhhhhhhccCC------cc-cccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD------RV-SALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  103 (245)
                      .++.++..+.++.++...+.++..      .+ ....+..+...-....+.   ......+++++|++  ++.+++++++
T Consensus         9 ~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~---~~~~~~~v~~im~~--~~~~v~~~~~   83 (127)
T d2ouxa2           9 TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI---VNDDDTLIADILNE--RVISVHVGDD   83 (127)
T ss_dssp             SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHT---TSCTTSBHHHHSBS--CCCCEETTSB
T ss_pred             CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccc---cccccEEhhhhccC--CCccCCCCCC
Confidence            456678889999999999865531      11 121222111111111111   12246789999998  8999999999


Q ss_pred             HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +.++++.|.+++.+.+||+|++|+++|+||..|++.+.
T Consensus        84 l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          84 QEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999999763

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=2.1e-10  Score=82.18  Aligned_cols=104  Identities=13%  Similarity=0.138  Sum_probs=62.0

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccc-cccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALE  109 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~  109 (245)
                      ..+++.++.++.+++..+.++.. .++... +..+...-....+   .......++.++|.+  +++++++++++.++++
T Consensus        10 ~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl---~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~   84 (122)
T d2yzqa2          10 NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI---LVNPDEEQLAMLVKR--DVPVVKENDTLKKAAK   84 (122)
T ss_dssp             SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-------------CCCBS--CCCEEETTSBHHHHHH
T ss_pred             CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchh---hhhhcccchhhcccc--ceeecchhhHHHHHHH
Confidence            35678889999999999987765 333322 1211111111100   112345689999998  8999999999999999


Q ss_pred             HHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          110 ILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       110 ~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      +|.+++.+.+||+|++|+++|+||.+|++++
T Consensus        85 ~~~~~~~~~lpVvd~~~~liGiit~~dil~~  115 (122)
T d2yzqa2          85 LMLEYDYRRVVVVDSKGKPVGILTVGDIIRR  115 (122)
T ss_dssp             HHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HHHHcCcEEEEEEeCCCEEEEEEEHHHHHHH
Confidence            9999999999999999999999999999875

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=3.1e-10  Score=84.60  Aligned_cols=108  Identities=20%  Similarity=0.230  Sum_probs=79.0

Q ss_pred             cccccccCCCCchhhhhhhhccCC-ccccccccc-----cccccccc-----------------------------ccCC
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS-----AVFASGTL-----------------------------TANS   75 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-----~~~~~~~~-----------------------------~~~~   75 (245)
                      ..+.++..++|+.+++..|.+... .++...+..     ....+...                             ....
T Consensus        12 r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (156)
T d2yzqa1          12 RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEK   91 (156)
T ss_dssp             SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC---------------------------
T ss_pred             CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhhhhhhhhhHHH
Confidence            347788999999999999987776 444432110     11111000                             0000


Q ss_pred             CCCCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984           76 AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus        76 ~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      ........+++++|++  ++.++.+++++.++.+.|.+++++++||+|++|+++|+||..|++++
T Consensus        92 ~~~~~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          92 FELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             -----CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhcccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence            1223566789999998  89999999999999999999999999999999999999999999975

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.04  E-value=1.7e-10  Score=84.90  Aligned_cols=109  Identities=14%  Similarity=0.076  Sum_probs=82.1

Q ss_pred             cccccccCCCCchhhhhhhhccCC-cccccc--cccc---cccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      ..++++..+.++.+++..+.+... .++...  +.+.   ...+..+............+++++|..  +++++.+++++
T Consensus        11 ~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l   88 (142)
T d1pvma4          11 SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDV   88 (142)
T ss_dssp             TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBH
T ss_pred             CCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccccc--ccccccchhhH
Confidence            347788999999999999987665 343332  2221   111211111111334566789999998  89999999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      .++.+.|.+++.+++||+|++|+++|+|+..|+++++
T Consensus        89 ~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          89 KDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             HHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             HHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999999853

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=5e-10  Score=80.04  Aligned_cols=102  Identities=16%  Similarity=0.085  Sum_probs=80.7

Q ss_pred             cccccccCCCCchhhhhhhhccCC-ccccc--cccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSAL--RRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      .++|.+..+.++.+++..+.++.. .++..  .+.+   +...+.       .......++.++|..  ++.++++++++
T Consensus         9 ~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl-------~~~~~~~~v~~~~~~--~~~~v~~~~~l   79 (121)
T d1vr9a3           9 QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDL-------LDLDLDSSVFNKVSL--PDFFVHEEDNI   79 (121)
T ss_dssp             SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGG-------TTSCTTSBSGGGCBC--TTCCEETTSBH
T ss_pred             CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhh-------hhhhccccccccccC--ccEEECCCCCH
Confidence            457889999999999999987776 33332  2221   122222       112345689999998  78999999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      .++++.|.+++...+||+|++|+++|+||..|++++.
T Consensus        80 ~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l  116 (121)
T d1vr9a3          80 THALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEAL  116 (121)
T ss_dssp             HHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999999863

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=7.9e-10  Score=81.47  Aligned_cols=105  Identities=16%  Similarity=0.176  Sum_probs=76.6

Q ss_pred             ccccccCCCCchhhhhhhhccCC------c-ccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD------R-VSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      .+..+..+.++.+++..+.++..      . .+...+..+...-....+   .......++.++|++  +++++++++++
T Consensus        10 ~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl---~~~~~~~~v~~im~~--~~~~v~~~~~~   84 (144)
T d2yvxa2          10 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDL---IVADPRTRVAEIMNP--KVVYVRTDTDQ   84 (144)
T ss_dssp             CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHH---TTSCTTCBSTTTSBS--SCCCEESSCCH
T ss_pred             CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhh---hhcccccchHHhccc--CCccCCCCChH
Confidence            45677889999999999866531      1 112111111111111111   112345689999998  89999999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      .+|++.|.+++.+.+||+|++|+++|+||..|++++.
T Consensus        85 ~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l  121 (144)
T d2yvxa2          85 EEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  121 (144)
T ss_dssp             HHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999999763

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.01  E-value=2e-10  Score=82.93  Aligned_cols=106  Identities=17%  Similarity=0.196  Sum_probs=80.4

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      .+.++.++.++.+++..|.++.. .++...+..    +...+..+............+++++|++  ++.++.+++++.+
T Consensus        14 ~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~   91 (127)
T d2rc3a1          14 TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNED   91 (127)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHH
T ss_pred             ccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhhcccccceeEeeeccc--eeEEeccCccHHH
Confidence            46778899999999999987765 444433322    1222211111112334456799999998  8999999999999


Q ss_pred             HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      +++.|.+++.+++||+| +|+++|+||..|++++
T Consensus        92 a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          92 CMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKD  124 (127)
T ss_dssp             HHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             HHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHH
Confidence            99999999999999998 5899999999999975

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.98  E-value=2.1e-10  Score=82.77  Aligned_cols=106  Identities=18%  Similarity=0.180  Sum_probs=80.0

Q ss_pred             ccccccCCCCchhhhhhhhccCC-cccccccccc----cccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~  106 (245)
                      .+.++.++.++.+++..+.++.. .++...+...    ...+.....  ........++.++|.+  ++.++++++++.+
T Consensus        13 ~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~--~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~   88 (127)
T d2ef7a1          13 QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAI--GKGKSLETKAEEFMTA--SLITIREDSPITG   88 (127)
T ss_dssp             SCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH--HTTCCTTCBGGGTSEE--CCCCEETTSBHHH
T ss_pred             CCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHH--Hhhccccchhhhhhhh--hccccccccchhH
Confidence            46678899999999999976665 4443332211    111111111  1223456789999988  8999999999999


Q ss_pred             HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      +.+.|.+++.+++||+|++|+++|+||..|+++++
T Consensus        89 ~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i  123 (127)
T d2ef7a1          89 ALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAI  123 (127)
T ss_dssp             HHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             HHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999763

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.98  E-value=1.6e-10  Score=84.06  Aligned_cols=108  Identities=21%  Similarity=0.199  Sum_probs=79.0

Q ss_pred             ccccccCCCCchhhhhhhhccCC-ccccccccc---ccccccccccCC---------CCCCCCcceecccccCCCceeEE
Q 025984           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS---AVFASGTLTANS---------AAPSSGVYTVGDFMTTKEELHVV   98 (245)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~v~~im~~~~~~~~v   98 (245)
                      +.+++..+.++.+++..+.+... .++...+..   ....+....+..         ........+++++|+.  ++.++
T Consensus        10 ~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v   87 (135)
T d3ddja2          10 NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP--NPVTV   87 (135)
T ss_dssp             SCCEECTTSBHHHHHHHTTGGGCCEEEEESSSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEE--SCCCE
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCeEEEEEecceeceeeccchhhhhccccccchhhhhccccccCCHHHHhCC--ccceE
Confidence            46778899999999999976665 444433210   000000000000         0011346789999998  89999


Q ss_pred             CCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984           99 KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus        99 ~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ++++++.+|+++|.+++.+.+||+|++|+++|+|+.+|++++.
T Consensus        88 ~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~  130 (135)
T d3ddja2          88 YNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY  130 (135)
T ss_dssp             ETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG
T ss_pred             EeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999999999999863

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.96  E-value=6.6e-10  Score=81.32  Aligned_cols=59  Identities=34%  Similarity=0.531  Sum_probs=55.6

Q ss_pred             cccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984          178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       178 ~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~  236 (245)
                      .++++|++++.++.+++++.+|+++|.+++.+++||+|++|+++|+||.+|+++.+...
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~   61 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESS   61 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhh
Confidence            57899999999999999999999999999999999999999999999999999887664

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.94  E-value=9.1e-10  Score=79.87  Aligned_cols=60  Identities=27%  Similarity=0.486  Sum_probs=56.4

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      ..||+++|++++.++++++++.+|+++|.+.+.+.+||+|++|+++|+||..|+++.+..
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~   63 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV   63 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhh
Confidence            468999999999999999999999999999999999999999999999999999987653

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.92  E-value=5.4e-10  Score=80.04  Aligned_cols=107  Identities=15%  Similarity=0.228  Sum_probs=78.5

Q ss_pred             cccccccCCCCchhhhhhhhccCC-ccccc--cccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSAL--RRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v  104 (245)
                      ..+.++..+.++.+++..|.+... .++..  .+..   +...+................++++|++  ++.++.+++++
T Consensus         9 ~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~   86 (123)
T d1y5ha3           9 AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASI   86 (123)
T ss_dssp             ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCH
T ss_pred             CCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeec--cceeeeecchH
Confidence            346788899999999999987664 33332  2211   1122211111111233456688999998  89999999999


Q ss_pred             HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      .++++.|.+++++++||+|+ |+++|+|+..|++++
T Consensus        87 ~~~~~~m~~~~~~~lpVvd~-~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          87 QEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARH  121 (123)
T ss_dssp             HHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHT
T ss_pred             HHHHHHHHHcCceEEEEEEC-CEEEEEEEHHHHHhh
Confidence            99999999999999999994 789999999999875

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.91  E-value=5.9e-10  Score=79.53  Aligned_cols=106  Identities=15%  Similarity=0.181  Sum_probs=79.1

Q ss_pred             cccccccCCCCchhhhhhhhccCC-cccccccc-cc---cccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-SA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      .+++++..+.++.++...+.+... .++...+. +.   ...+....+. ........+++++|++  +++++++++++.
T Consensus         8 ~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~-~~~~~~~~~v~~~m~~--~~~~v~~~~~l~   84 (120)
T d1pbja3           8 TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIA-EGDDLAEVKVWEVMER--DLVTISPRATIK   84 (120)
T ss_dssp             CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHH-HTCCTTTSBHHHHCBC--GGGEECTTSCHH
T ss_pred             CCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecccccc-ccccccceeEeeeccc--ccccccchhHHH
Confidence            356788899999999999876665 33333222 11   1111111111 1234567899999998  899999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      ++++.|.+++.+.+||++ +|+++|+||..|++++
T Consensus        85 ~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          85 EAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             HHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence            999999999999999987 5899999999999975

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.91  E-value=3.4e-10  Score=80.86  Aligned_cols=102  Identities=21%  Similarity=0.173  Sum_probs=52.7

Q ss_pred             cccCCCCchhhhhhhhccCC-cccccc----cc----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           35 CLLLSRPGCRVFSVLATSSD-RVSALR----RS----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        35 ~~~~~~~~~~v~~~~~~~~~-~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      ++.++.++.++...|.++.. .++.-.    ..    -....+..    .........++..+|....++.++++++++.
T Consensus         8 tv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   83 (120)
T d1jr1a4           8 VLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDID----FLKEEEHDRFLEEIMTKREDLVVAPAGITLK   83 (120)
T ss_dssp             C----CCCC--CCBC---------------CTTCCC--------------------------CCSBTTTSCCEETTCCHH
T ss_pred             EECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeee----ehhccccCceeEEEEeeccCceEECCCCCHH
Confidence            56677888888888877664 444322    11    11112211    1112223456667765544789999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~  140 (245)
                      +|+++|.+++++++||+|++|+++|+||..|++++
T Consensus        84 ~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          84 EANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             HHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             HHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            99999999999999999999999999999999874

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.84  E-value=2.1e-09  Score=77.80  Aligned_cols=59  Identities=29%  Similarity=0.440  Sum_probs=53.9

Q ss_pred             Ccccccc--cCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984          177 KMVGDLM--TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  235 (245)
Q Consensus       177 ~~v~~~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~  235 (245)
                      .+++++|  .....++.+++++.+|+++|.+++++++||+|++|+++|+||..|+++++..
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~   62 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG   62 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhc
Confidence            4678888  4568899999999999999999999999999989999999999999998864

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.83  E-value=3.9e-09  Score=75.79  Aligned_cols=101  Identities=16%  Similarity=0.133  Sum_probs=72.7

Q ss_pred             ccccCCCCchhhhhhhhccCC-cccccc---cc----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984           34 PCLLLSRPGCRVFSVLATSSD-RVSALR---RS----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (245)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~  105 (245)
                      .++.++.++.+++..|.++.. .++.-.   +.    -+...+...     ...........+|..  +++++++++++.
T Consensus         8 vtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~l~   80 (126)
T d1zfja4           8 FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF-----ISDYNAPISEHMTSE--HLVTAAVGTDLE   80 (126)
T ss_dssp             CCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH-----CSCSSSBTTTSCCCS--CCCCEETTCCHH
T ss_pred             eEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHH-----hhccCCceeeeeecc--ceeecCCCCCHH
Confidence            467889999999999988776 444322   11    111222111     111122233444555  788999999999


Q ss_pred             HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ++.++|.+++++.+||+|++|+++|+||..|++++.
T Consensus        81 ~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          81 TAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI  116 (126)
T ss_dssp             HHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHh
Confidence            999999999999999999999999999999999863

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.81  E-value=5.4e-09  Score=76.64  Aligned_cols=60  Identities=30%  Similarity=0.341  Sum_probs=55.3

Q ss_pred             cccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       178 ~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                      .+.++|..+|+++.+++++.+|+++|.++++..+||+|++|+++|+||..|+++++....
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~   64 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF   64 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhccc
Confidence            467789999999999999999999999999999999998899999999999999876544

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=1.1e-08  Score=75.02  Aligned_cols=109  Identities=12%  Similarity=0.056  Sum_probs=76.2

Q ss_pred             cccccccCCCCchhhhhhhhccCC-ccccc--ccc---cccccccccccCCCCCCCCcc------eecccccCCCceeEE
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSAL--RRS---SAVFASGTLTANSAAPSSGVY------TVGDFMTTKEELHVV   98 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~------~v~~im~~~~~~~~v   98 (245)
                      .++.++..+.++.+++..|.++.. .++..  .+.   -+...+...............      ++...|..  ++.++
T Consensus        20 ~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v   97 (145)
T d2v8qe1          20 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLKC   97 (145)
T ss_dssp             SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--SCCEE
T ss_pred             CCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhhhccC--CCeEE
Confidence            347788999999999999987665 33332  221   122222221111111112222      33344555  78899


Q ss_pred             CCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984           99 KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus        99 ~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      .+++++.++++.|.+++.+.+||+|++|+++|+||..||.+++
T Consensus        98 ~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~l  140 (145)
T d2v8qe1          98 YLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL  140 (145)
T ss_dssp             CTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999999999999875

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.80  E-value=4.9e-09  Score=76.49  Aligned_cols=62  Identities=31%  Similarity=0.491  Sum_probs=57.4

Q ss_pred             CcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984          177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  238 (245)
Q Consensus       177 ~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~  238 (245)
                      .||+++|++++.++++++++.+|+++|.+++.+++||+|++++++|+++..|+++++.....
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~   63 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVD   63 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhcccc
Confidence            47899999999999999999999999999999999999999999999999999998875443

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.78  E-value=3.8e-09  Score=78.42  Aligned_cols=111  Identities=18%  Similarity=0.219  Sum_probs=77.7

Q ss_pred             cccccccCCCCchhhhhhhhccCC-cccccc--cc---cccccccccccCCCCCCCCcceecccccCC----CceeEECC
Q 025984           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALR--RS---SAVFASGTLTANSAAPSSGVYTVGDFMTTK----EELHVVKP  100 (245)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~v~~im~~~----~~~~~v~~  100 (245)
                      .++.++..+.++.+++..|.++.. .++...  +.   -+...+...............++.++|...    .++.++.+
T Consensus        12 ~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~   91 (153)
T d2ooxe2          12 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRA   91 (153)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCCEECT
T ss_pred             CCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCCeEECC
Confidence            357889999999999999987776 443332  21   111111111111011122344666666321    26778999


Q ss_pred             CCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984          101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus       101 ~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ++++.++++.|.+++.+.+||+|++|+++|+||..|++++.
T Consensus        92 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~  132 (153)
T d2ooxe2          92 TDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI  132 (153)
T ss_dssp             TCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             CCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999999999864

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.67  E-value=3.8e-08  Score=72.89  Aligned_cols=64  Identities=28%  Similarity=0.359  Sum_probs=58.2

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC--CCcEEEEEEhHHHHHHHHHhHHH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA--DGKLVGIITRGNVVRAALQIKHA  239 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~g~~vGiIt~~dll~~~~~~~~~  239 (245)
                      +..++++|+++++++++++++.+|+++|.+++.+++||+|+  ++.++|+++..|+++.+......
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~   75 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISA   75 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHT
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhcccc
Confidence            67899999999999999999999999999999999999984  47899999999999998765543

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.64  E-value=2.2e-08  Score=72.05  Aligned_cols=59  Identities=20%  Similarity=0.342  Sum_probs=53.8

Q ss_pred             cccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEhHHHHHHHHHh
Q 025984          178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV--DADGKLVGIITRGNVVRAALQI  236 (245)
Q Consensus       178 ~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~vGiIt~~dll~~~~~~  236 (245)
                      .++++|.++|+++++++++.+|+++|.+++.+++||+  |++++++|+++..|+++++...
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~   62 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR   62 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc
Confidence            5789999999999999999999999999999999999  4458899999999999887654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=3.2e-08  Score=72.05  Aligned_cols=61  Identities=18%  Similarity=0.266  Sum_probs=53.1

Q ss_pred             Ccccc---cccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984          177 KMVGD---LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       177 ~~v~~---~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~  237 (245)
                      .++.+   ++..++.++.+++++.+|+++|.+++.+++||+|++|+++|+||..|+++.+....
T Consensus         6 ~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~   69 (140)
T d2nyca1           6 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI   69 (140)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-
T ss_pred             CcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcc
Confidence            44444   45678899999999999999999999999999999999999999999999886544

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.8e-07  Score=70.15  Aligned_cols=59  Identities=14%  Similarity=0.227  Sum_probs=53.6

Q ss_pred             CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (245)
Q Consensus        80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~  141 (245)
                      ....+++++|.+  ++.++.+++++.+++++|.+++.+.+||+| +|+++|+||..|+++++
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l  155 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHI  155 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            456689999998  899999999999999999999999999987 68999999999999864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.41  E-value=1.8e-07  Score=70.63  Aligned_cols=63  Identities=17%  Similarity=0.218  Sum_probs=55.0

Q ss_pred             cCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHHHHHHHHhH
Q 025984          175 NGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVRAALQIK  237 (245)
Q Consensus       175 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~vGiIt~~dll~~~~~~~  237 (245)
                      ....+.|+|..  .+++++++.++.+|+..|.+++++.+||+|. +++++|+||..|+++.+....
T Consensus        18 ~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~   83 (179)
T d2ooxe1          18 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY   83 (179)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred             cCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhcc
Confidence            35678899963  5788999999999999999999999999984 578999999999999887543

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=5.8e-07  Score=66.41  Aligned_cols=64  Identities=19%  Similarity=0.253  Sum_probs=55.5

Q ss_pred             CCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHHHHHHHHhHHH
Q 025984          176 GKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVRAALQIKHA  239 (245)
Q Consensus       176 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~vGiIt~~dll~~~~~~~~~  239 (245)
                      ...+.|+|..  .+++++.++++.+|+++|.++++..+||+++ +++++|+||..|+++.+......
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~   78 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKS   78 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHH
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhcccc
Confidence            5678899854  5688999999999999999999999999974 68899999999999998765544

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=89.16  E-value=0.00083  Score=51.20  Aligned_cols=59  Identities=10%  Similarity=0.095  Sum_probs=51.8

Q ss_pred             CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984          176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  234 (245)
Q Consensus       176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~  234 (245)
                      ...+.+++.....++..+++-+.+..+|.+.+.+.+||++++++.+|.|+..|+..+..
T Consensus       136 ~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A~~  194 (213)
T d1lkvx_         136 QLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQ  194 (213)
T ss_dssp             HHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred             hHHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHHHH
Confidence            45677888777888999999999999999999999999999999999999999866543