Citrus Sinensis ID: 026033

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
MSEGAMAVVKPEMKSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGGIYEKYSSFFSASLTVFPMHQVFNSVLVDLT
cccccccccccccccEEEEEEccccEEEccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccEEEEcccccccHHHHHHHHHHHcccc
ccHHHHHHcccccccEEEEEEccccEEEEcHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHccccccEEEEEEEEEEEEEEEcccHHHEcEEEEEcc
msegamavvkpemKSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQtgmgssknyaislpqrvnpAIFGLVLDYCrfhqvpgrsnkerkMFDEKFIRMDTKKLCELtsaadslqlkplvDLTSRALARIIegktpeeiretfhlpddlteeekleplnnvtddprIRLLNRLYARKRKELKEReklknveveeehvdersvDDLLsfinggnggiyEKYSSFFSasltvfpmhQVFNSVLVDLT
msegamavvkpemksyIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHqvpgrsnkerkmfDEKFIRMDTKKLCELTsaadslqlkplvdLTSRALARiiegktpeeiretfhlpddlteeekleplnnvtddprirlLNRLYArkrkelkereklknveveeehvdersvddlLSFINGGNGGIYEKYSSFFSASLTVFPMHQVFNSVLVDLT
MSEGAMAVVKPEMKSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYArkrkelkereklknveveeeHVDERSVDDLLSFINGGNGGIYEKYSSFFSASLTVFPMHQVFNSVLVDLT
************MKSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPG*******MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEG*********************************IRLLNRLY***************************VDDLLSFINGGNGGIYEKYSSFFSASLTVFPMHQVFNSVLV***
****************IWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKL*********************************************SVDDLLSFING*********SSFFSASLTVFPMHQVFNSVLVDLT
MSEGAMAVVKPEMKSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKEREKLK***********RSVDDLLSFINGGNGGIYEKYSSFFSASLTVFPMHQVFNSVLVDLT
*************KSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGGIYEKYSSFFSASLTVFPMHQVFNSVLVDLT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSEGAMAVVKPEMKSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLxxxxxxxxxxxxxxxxxxxxxEVEEEHVDERSVDDLLSFINGGNGGIYEKYSSFFSASLTVFPMHQVFNSVLVDLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query244 2.2.26 [Sep-21-2011]
Q8LF97 351 SKP1-like protein 21 OS=A yes no 0.856 0.595 0.872 1e-106
A8MQG7 352 SKP1-like protein 20 OS=A no no 0.856 0.593 0.867 1e-105
Q9LSX9153 SKP1-like protein 9 OS=Ar no no 0.545 0.869 0.364 3e-16
Q71U00163 S-phase kinase-associated N/A no 0.557 0.834 0.351 2e-15
Q5R512163 S-phase kinase-associated yes no 0.557 0.834 0.351 2e-15
Q4R5B9163 S-phase kinase-associated N/A no 0.557 0.834 0.351 2e-15
P63208163 S-phase kinase-associated yes no 0.557 0.834 0.351 2e-15
Q5ZKF5163 S-phase kinase-associated yes no 0.557 0.834 0.351 2e-15
P63209163 S-phase kinase-associated yes no 0.557 0.834 0.351 2e-15
Q3ZCF3163 S-phase kinase-associated yes no 0.557 0.834 0.351 2e-15
>sp|Q8LF97|ASK21_ARATH SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1 Back     alignment and function desciption
 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/211 (87%), Positives = 199/211 (94%), Gaps = 2/211 (0%)

Query: 1   MSEGAMAVVKPEM-KSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISL 59
           MSEG MA++KPEM KSYIW++T DGSIQQVE+EVAMFCPMIC+E+IQ G+GSSKNYAISL
Sbjct: 1   MSEGEMAIIKPEMMKSYIWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISL 60

Query: 60  PQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLV 119
           PQRVNPA+  L+ DYCRFHQVPGRSNKERK++DEKFIRMDTK+LCELTSAADSLQLKPLV
Sbjct: 61  PQRVNPAMLSLIFDYCRFHQVPGRSNKERKVYDEKFIRMDTKRLCELTSAADSLQLKPLV 120

Query: 120 DLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKE 179
           DLTSRALARIIEGKTPEEIRE FHLPDDLTEEEKLEPL N  DDPRIRLLNRLYA+KRKE
Sbjct: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTMDDPRIRLLNRLYAKKRKE 180

Query: 180 LKEREKLKNVEVEEEHVDERSVDDLLSFING 210
           LKEREKLK+VEV EEHVDERSVDDLLSFING
Sbjct: 181 LKEREKLKSVEV-EEHVDERSVDDLLSFING 210
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.
Arabidopsis thaliana (taxid: 3702)
>sp|A8MQG7|ASK20_ARATH SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1 Back     alignment and function description
>sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3 Back     alignment and function description
>sp|Q5R512|SKP1_PONAB S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R5B9|SKP1_MACFA S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1 Back     alignment and function description
>sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZKF5|SKP1_CHICK S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1 Back     alignment and function description
>sp|P63209|SKP1_CAVPO S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2 Back     alignment and function description
>sp|Q3ZCF3|SKP1_BOVIN S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
449456470 425 PREDICTED: SKP1-like protein 21-like [Cu 0.868 0.498 0.929 1e-113
302143834 358 unnamed protein product [Vitis vinifera] 0.872 0.594 0.943 1e-108
225464509 359 PREDICTED: SKP1-like protein 21-like [Vi 0.872 0.593 0.943 1e-108
224137050198 predicted protein [Populus trichocarpa] 0.811 1.0 0.934 1e-105
224067902 345 predicted protein [Populus trichocarpa] 0.872 0.617 0.859 1e-105
18411999 351 SKP1-like protein 21 [Arabidopsis thalia 0.856 0.595 0.872 1e-104
186511286 349 SKP1-like protein 21 [Arabidopsis thalia 0.856 0.598 0.872 1e-104
224130292211 predicted protein [Populus trichocarpa] 0.860 0.995 0.867 1e-104
42569956342 SKP1-like protein 20 [Arabidopsis thalia 0.856 0.611 0.867 1e-104
13877585227 putative SKP1-like protein [Arabidopsis 0.856 0.920 0.867 1e-103
>gi|449456470|ref|XP_004145972.1| PREDICTED: SKP1-like protein 21-like [Cucumis sativus] gi|449524038|ref|XP_004169030.1| PREDICTED: SKP1-like protein 21-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/213 (92%), Positives = 206/213 (96%), Gaps = 1/213 (0%)

Query: 1   MSEGAMAVVKPEMKSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLP 60
           MSE AMAVVKPEMKSYIW+QT DGSIQQVEEEVAMFCPMICREI+QTGMGSSKNYAISLP
Sbjct: 1   MSESAMAVVKPEMKSYIWLQTADGSIQQVEEEVAMFCPMICREILQTGMGSSKNYAISLP 60

Query: 61  QRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVD 120
           QRVNPAI GL+LDYCRFHQVPGRSNKERK FDEKFIRMDTKKLCELTSAADSLQLKPLVD
Sbjct: 61  QRVNPAILGLILDYCRFHQVPGRSNKERKTFDEKFIRMDTKKLCELTSAADSLQLKPLVD 120

Query: 121 LTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKEL 180
           LTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPL N+TDDPRIRLLNRLYARKRKEL
Sbjct: 121 LTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYARKRKEL 180

Query: 181 KEREKLKNVEVEEEHVDERSVDDLLSFINGGNG 213
           +EREKLKNVE+ EE VD+RSVDDLLSFINGG+G
Sbjct: 181 REREKLKNVEI-EERVDDRSVDDLLSFINGGDG 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302143834|emb|CBI22695.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225464509|ref|XP_002269721.1| PREDICTED: SKP1-like protein 21-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224137050|ref|XP_002322481.1| predicted protein [Populus trichocarpa] gi|222869477|gb|EEF06608.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224067902|ref|XP_002302590.1| predicted protein [Populus trichocarpa] gi|222844316|gb|EEE81863.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18411999|ref|NP_567113.1| SKP1-like protein 21 [Arabidopsis thaliana] gi|75155821|sp|Q8LF97.1|ASK21_ARATH RecName: Full=SKP1-like protein 21; Short=AtSK21 gi|21537190|gb|AAM61531.1| putative SKP1-like protein [Arabidopsis thaliana] gi|332646677|gb|AEE80198.1| SKP1-like protein 21 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186511286|ref|NP_001118876.1| SKP1-like protein 21 [Arabidopsis thaliana] gi|332646678|gb|AEE80199.1| SKP1-like protein 21 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224130292|ref|XP_002320801.1| predicted protein [Populus trichocarpa] gi|222861574|gb|EEE99116.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42569956|ref|NP_566058.2| SKP1-like protein 20 [Arabidopsis thaliana] gi|330255526|gb|AEC10620.1| SKP1-like protein 20 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|13877585|gb|AAK43870.1|AF370493_1 putative SKP1-like protein [Arabidopsis thaliana] gi|20148737|gb|AAM10259.1| putative SKP1-like protein [Arabidopsis thaliana] gi|20197211|gb|AAC28530.2| E3 ubiquitin ligase SCF complex subunit SKP1/ASK1-related [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
TAIR|locus:505006407 351 SK21 "AT3G61415" [Arabidopsis 0.856 0.595 0.791 2.4e-85
TAIR|locus:2050709 352 SK20 "AT2G45950" [Arabidopsis 0.856 0.593 0.786 5.6e-84
DICTYBASE|DDB_G0269230162 fpaA "ubiquitin ligase subunit 0.594 0.895 0.360 2e-17
DICTYBASE|DDB_G0273615162 fpaB-2 "ubiquitin ligase subun 0.594 0.895 0.360 2.5e-17
DICTYBASE|DDB_G0273251162 fpaB-1 "ubiquitin ligase subun 0.594 0.895 0.360 2.5e-17
TAIR|locus:2093084153 SK9 "AT3G21850" [Arabidopsis t 0.545 0.869 0.364 2.5e-17
UNIPROTKB|Q5ZKF5163 SKP1 "S-phase kinase-associate 0.565 0.846 0.36 4.1e-17
UNIPROTKB|Q3ZCF3163 SKP1 "S-phase kinase-associate 0.565 0.846 0.36 4.1e-17
UNIPROTKB|F8W8N3158 SKP1 "S-phase kinase-associate 0.565 0.873 0.36 4.1e-17
UNIPROTKB|P63208163 SKP1 "S-phase kinase-associate 0.565 0.846 0.36 4.1e-17
TAIR|locus:505006407 SK21 "AT3G61415" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 167/211 (79%), Positives = 180/211 (85%)

Query:     1 MSEGAMAVVKPEM-KSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISL 59
             MSEG MA++KPEM KSYIW++T DGSIQQVE+EVAMFCPMIC+E+IQ G+GSSKNYAISL
Sbjct:     1 MSEGEMAIIKPEMMKSYIWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISL 60

Query:    60 PQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLV 119
             PQRVNPA+  L+ DYCRFHQVPGRSNKERK++DEKFIRMDTK+LCELTSAADSLQLKPLV
Sbjct:    61 PQRVNPAMLSLIFDYCRFHQVPGRSNKERKVYDEKFIRMDTKRLCELTSAADSLQLKPLV 120

Query:   120 DLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYAXXXXX 179
             DLTSRALARIIEGKTPEEIRE FHLPDDLTEEEKLEPL N  DDPRIRLLNRLYA     
Sbjct:   121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTMDDPRIRLLNRLYAKKRKE 180

Query:   180 XXXXXXXXXXXXXXXHVDERSVDDLLSFING 210
                            HVDERSVDDLLSFING
Sbjct:   181 LKEREKLKSVEVEE-HVDERSVDDLLSFING 210
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS
TAIR|locus:2050709 SK20 "AT2G45950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269230 fpaA "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273615 fpaB-2 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273251 fpaB-1 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2093084 SK9 "AT3G21850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKF5 SKP1 "S-phase kinase-associated protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCF3 SKP1 "S-phase kinase-associated protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F8W8N3 SKP1 "S-phase kinase-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P63208 SKP1 "S-phase kinase-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LF97ASK21_ARATHNo assigned EC number0.87200.85650.5954yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037678001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (357 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
smart00512104 smart00512, Skp1, Found in Skp1 protein family 2e-22
pfam0146678 pfam01466, Skp1, Skp1 family, dimerisation domain 2e-17
COG5201158 COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen 2e-15
>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family Back     alignment and domain information 
 Score = 87.7 bits (218), Expect = 2e-22
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 14  KSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLD 73
             YI + ++DG + +VE EVA     I   I   G+    N  I LP  V   I   V++
Sbjct: 1   SKYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPN-VTSKILSKVIE 59

Query: 74  YCRFHQVPGRSNKE---RKMFDEKFIRMDTKKLCELTSAADSLQL 115
           YC  H     S  +      +D +F+++D + L EL  AA+ L +
Sbjct: 60  YCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104
>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain Back     alignment and domain information
>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 244
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 100.0
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 100.0
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 99.94
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 99.89
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 99.73
KOG3473112 consensus RNA polymerase II transcription elongati 99.58
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 98.09
PHA02713 557 hypothetical protein; Provisional 97.87
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 97.63
PHA03098 534 kelch-like protein; Provisional 97.33
PHA02790 480 Kelch-like protein; Provisional 97.2
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 96.54
KOG2716230 consensus Polymerase delta-interacting protein PDI 90.55
KOG3433203 consensus Protein involved in meiotic recombinatio 86.51
KOG4682 488 consensus Uncharacterized conserved protein, conta 84.02
COG5124209 Protein predicted to be involved in meiotic recomb 83.65
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=7.6e-44  Score=299.20  Aligned_cols=146  Identities=35%  Similarity=0.548  Sum_probs=133.1

Q ss_pred             CCceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCC---------
Q 026033           13 MKSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGR---------   83 (244)
Q Consensus        13 ~~~~I~L~SsDG~~f~V~~~~a~~S~~I~~~l~~~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~---------   83 (244)
                      ++++|+|+|+||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++         
T Consensus         3 ~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~   80 (162)
T KOG1724|consen    3 SKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKELP   80 (162)
T ss_pred             CCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHccccccccccccccc
Confidence            46899999999999999999999999999999999885322 599999 7999999999999999998642         


Q ss_pred             CchhhccchhhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChHhhhcccccc
Q 026033           84 SNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV  160 (244)
Q Consensus        84 s~~~l~~wD~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T~EEe~e~~~~~  160 (244)
                      ....++.||++|+++|..+||+|+.|||||+|++|+++||++||+|++||||+|||++|||++|+||||+.++++++
T Consensus        81 ~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~  157 (162)
T KOG1724|consen   81 EETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKEN  157 (162)
T ss_pred             ccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhcc
Confidence            22348999999999999999999999999999999999999999999999999999999999999999887777654

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
3l2o_A149 Structure-Based Mechanism Of Dimerization-Dependent 6e-17
2e31_B166 Structural Basis For Selection Of Glycosylated Subs 7e-17
1fqv_B149 Insights Into Scf Ubiquitin Ligases From The Struct 7e-17
2ast_A159 Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len 1e-16
1p22_B145 Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex 1e-15
1fs1_B141 Insights Into Scf Ubiquitin Ligases From The Struct 2e-15
2p1m_A160 Tir1-ask1 Complex Structure Length = 160 7e-14
1ldk_D133 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 2e-13
3mks_A169 Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH 2e-09
1nex_A169 Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp 3e-09
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149 Back     alignment and structure 
Iteration: 1

 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 87/143 (60%), Gaps = 8/143 (5%)
Query: 15  SYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDY 74
           + I +Q++DG I +V+ E+A     I   +   GM       + LP  VN AI   V+ +
Sbjct: 2   ASIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-----PVPLP-NVNAAILKKVIQW 55
Query: 75  CRFHQV-PGRSNKER-KMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEG 132
           C  H+  PG S  +   ++D++F+++D   L EL  AA+ L +K L+D+T + +A +I+G
Sbjct: 56  CTHHKDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG 115
Query: 133 KTPEEIRETFHLPDDLTEEEKLE 155
           KTPEEIR+TF++ +D TEEE+ +
Sbjct: 116 KTPEEIRKTFNIKNDFTEEEEAQ 138
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166 Back     alignment and structure
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149 Back     alignment and structure
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145 Back     alignment and structure
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141 Back     alignment and structure
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160 Back     alignment and structure
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133 Back     alignment and structure
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169 Back     alignment and structure
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 1e-29
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 3e-27
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 6e-26
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 2e-25
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 2e-05
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 8e-04
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141 Back     alignment and structure
 Score =  107 bits (268), Expect = 1e-29
 Identities = 48/146 (32%), Positives = 80/146 (54%), Gaps = 16/146 (10%)

Query: 15  SYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDY 74
             I +Q++DG I +V+ E+A     I   +   GM       + LP  VN AI   V+ +
Sbjct: 2   PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-----PVPLPN-VNAAILKKVIQW 55

Query: 75  CRFHQ----------VPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSR 124
           C  H+             +   +  ++D++F+++D   L EL  AA+ L +K L+D+T +
Sbjct: 56  CTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCK 115

Query: 125 ALARIIEGKTPEEIRETFHLPDDLTE 150
            +A +I+GKTPEEIR+TF++ +D TE
Sbjct: 116 TVANMIKGKTPEEIRKTFNIKNDFTE 141
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169 Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160 Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 100.0
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 100.0
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 100.0
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 100.0
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 99.92
2fnj_C96 Transcription elongation factor B polypeptide 1; b 99.92
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 99.92
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.88
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 98.44
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 98.36
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 98.25
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 98.21
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.17
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 98.15
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 98.07
2vpk_A116 Myoneurin; transcription regulation, transcription 98.06
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 98.03
3b84_A119 Zinc finger and BTB domain-containing protein 48; 98.01
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 98.01
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 98.01
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 97.97
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 97.78
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 97.76
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 97.73
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 97.65
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 97.65
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 97.55
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 97.48
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 83.76
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
Probab=100.00  E-value=9.5e-47  Score=317.76  Aligned_cols=146  Identities=24%  Similarity=0.441  Sum_probs=129.7

Q ss_pred             CceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCC---CCCccccCCCCCCHHHHHHHHHHHhhcCCCCC-------
Q 026033           14 KSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGS---SKNYAISLPQRVNPAIFGLVLDYCRFHQVPGR-------   83 (244)
Q Consensus        14 ~~~I~L~SsDG~~f~V~~~~a~~S~~I~~~l~~~~~~~---~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~-------   83 (244)
                      +++|+|+|+||++|.|++++|++|++|++|+.+.+...   +...+|||| +|++.+|++|++||+||+.++.       
T Consensus         6 ~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~Iplp-nV~s~iL~kVieyc~~h~~~~~~~~~~~~   84 (169)
T 3v7d_A            6 TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVP-NVRSSVLQKVIEWAEHHRDSNFPDEDDDD   84 (169)
T ss_dssp             CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECT-TCCHHHHHHHHHHHHHTTTCCCCC-----
T ss_pred             CCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeC-CCCHHHHHHHHHHHHHcccCCCccccccc
Confidence            47999999999999999999999999999999766411   123789999 8999999999999999998642       


Q ss_pred             --CchhhccchhhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChHhhhcccccc
Q 026033           84 --SNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV  160 (244)
Q Consensus        84 --s~~~l~~wD~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T~EEe~e~~~~~  160 (244)
                        ....++.||++|+++|..+||+||.|||||+|++|+++||++||++|+||||+|||++|||++||||||++++++++
T Consensus        85 ~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~en  163 (169)
T 3v7d_A           85 SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRREN  163 (169)
T ss_dssp             ---CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTTC
T ss_pred             ccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhc
Confidence              23468999999999999999999999999999999999999999999999999999999999999999999998864
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 244
d1nexa170 a.157.1.1 (A:116-185) Centromere DNA-binding prote 1e-21
d1fs1b155 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, 3e-19
d2c9wc196 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens 9e-14
d1hv2a_99 d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy 1e-12
d1nexa272 d.42.1.1 (A:4-103) Centromere DNA-binding protein 6e-11
d1fs1b261 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk 2e-08
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70 Back     information, alignment and structure

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.8 bits (205), Expect = 1e-21
 Identities = 26/65 (40%), Positives = 45/65 (69%)

Query: 91  FDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 150
           +D +F+++D + L E+  AA+ L +KPL+D   + +A +I G++PEEIR TF++ +D T 
Sbjct: 4   WDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTP 63

Query: 151 EEKLE 155
           EE+  
Sbjct: 64  EEEAA 68
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99 Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 99.94
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 99.91
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.86
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 99.77
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.77
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 98.22
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.12
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.5e-28  Score=174.98  Aligned_cols=70  Identities=37%  Similarity=0.660  Sum_probs=67.6

Q ss_pred             hccchhhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChHhhhccc
Q 026033           88 RKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPL  157 (244)
Q Consensus        88 l~~wD~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T~EEe~e~~  157 (244)
                      +++||++|+++|...||+|+.|||||+|++|+++||++||.+|+||||+|||++|||++|+||||+++++
T Consensus         1 i~~wD~~F~~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           1 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999874
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure