Citrus Sinensis ID: 026039

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
MGPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGDALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQSNILKTWLVAVATVVLIVTGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFPPPAPARPAKKKKKN
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEEcccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccEEEEccHHHHHHHHHHHHHHHcccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHccHHEEccccccHHcEEEEEHHHHHHHHHHHHHHHHHcccccHHHHHHHcccc
mgpvkaaaGDLVLTFMWVFVSSTFGVLTTEIASALgvhglvwppmlITTAIVFVFVFIFNIIgdalggasfnptgtAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMeymppkykhmlggpslqvdlhtgAIAEGVLTFLITFAVLVIMlkgpqsniLKTWLVAVATVVLIVTgsaytgpsmnpanaFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRvvfpppaparpakkkkkn
MGPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGDALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQSNILKTWLVAVATVVLIVTGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFpppaparpakkkkkn
MGPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAivfvfvfifniiGDALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPaqaagavggalaIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQSNILKTWlvavatvvlivtGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFpppaparpakkkkkN
*******AGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGDALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQSNILKTWLVAVATVVLIVTGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF***************
*GPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGDALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQSNILKTWLVAVATVVLIVTGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVV****************
MGPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGDALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQSNILKTWLVAVATVVLIVTGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFPPPA***********
*GPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGDALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQSNILKTWLVAVATVVLIVTGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFPPPA***********
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGDALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLGGPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQSNILKTWLVAVATVVLIVTGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFPPPAPARPAKKKKKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query244 2.2.26 [Sep-21-2011]
Q9ATM2243 Aquaporin SIP1-2 OS=Zea m N/A no 0.889 0.893 0.642 6e-70
Q9FK43243 Probable aquaporin SIP1-2 yes no 0.987 0.991 0.569 1e-69
Q5VR89246 Aquaporin SIP1-1 OS=Oryza yes no 0.885 0.878 0.625 3e-68
Q9M8W5240 Aquaporin SIP1-1 OS=Arabi no no 0.926 0.941 0.580 2e-67
Q9ATM3245 Aquaporin SIP1-1 OS=Zea m N/A no 0.881 0.877 0.620 8e-63
Q9M1K3237 Probable aquaporin SIP2-1 no no 0.971 1.0 0.311 5e-25
Q10M80250 Aquaporin SIP2-1 OS=Oryza no no 0.926 0.904 0.3 3e-19
Q9ATM1249 Aquaporin SIP2-1 OS=Zea m N/A no 0.676 0.662 0.350 1e-18
Q9NHW7249 Aquaporin AQPAe.a OS=Aede N/A no 0.807 0.791 0.304 4e-10
Q23808255 Aquaporin AQPcic OS=Cicad N/A no 0.758 0.725 0.289 4e-09
>sp|Q9ATM2|SIP12_MAIZE Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1 Back     alignment and function desciption
 Score =  263 bits (673), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 140/218 (64%), Positives = 179/218 (82%), Gaps = 1/218 (0%)

Query: 12  VLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGDALGGASF 71
           V+TF+WV   ST G  TT + S L + G+ +  +L+T +++ V +F+FNI+ DALGGASF
Sbjct: 15  VVTFLWVLCVSTLGASTTAVTSYLRLQGVHFA-LLVTVSLLSVLLFVFNILCDALGGASF 73

Query: 72  NPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLGGPSLQVDL 131
           NPTG AAFYA GV S SL S+ALR PAQAAGAVGGALAI E MP +Y+HMLGGPSL+VD 
Sbjct: 74  NPTGVAAFYAAGVTSPSLFSIALRLPAQAAGAVGGALAISELMPAQYRHMLGGPSLKVDP 133

Query: 132 HTGAIAEGVLTFLITFAVLVIMLKGPQSNILKTWLVAVATVVLIVTGSAYTGPSMNPANA 191
           HTGA AE VLTF+IT AVL+I++KGP++ I+KTW++++ T+ L+++G+AYTGPSMNPANA
Sbjct: 134 HTGAGAELVLTFVITLAVLLIIVKGPRNPIIKTWMISICTLCLVLSGAAYTGPSMNPANA 193

Query: 192 FGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
           FGWAYVN  H+TW+QFYVYWICPFIGA+ A+ IFR +F
Sbjct: 194 FGWAYVNNRHNTWEQFYVYWICPFIGAILAAWIFRAMF 231
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Zea mays (taxid: 4577)
>sp|Q9FK43|SIP12_ARATH Probable aquaporin SIP1-2 OS=Arabidopsis thaliana GN=SIP1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q5VR89|SIP11_ORYSJ Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica GN=SIP1-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8W5|SIP11_ARATH Aquaporin SIP1-1 OS=Arabidopsis thaliana GN=SIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM3|SIP11_MAIZE Aquaporin SIP1-1 OS=Zea mays GN=SIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M1K3|SIP21_ARATH Probable aquaporin SIP2-1 OS=Arabidopsis thaliana GN=SIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q10M80|SIP21_ORYSJ Aquaporin SIP2-1 OS=Oryza sativa subsp. japonica GN=SIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM1|SIP21_MAIZE Aquaporin SIP2-1 OS=Zea mays GN=SIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9NHW7|AQP_AEDAE Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2 Back     alignment and function description
>sp|Q23808|AQP_CICVR Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
224123670239 aquaporin, MIP family, SIP subfamily [Po 0.975 0.995 0.694 3e-94
224144734239 aquaporin, MIP family, SIP subfamily [Po 0.975 0.995 0.731 1e-91
388491884245 unknown [Lotus japonicus] 0.963 0.959 0.684 2e-90
255045897229 simple intrinsic protein SIP1.2 [Populus 0.938 1.0 0.737 7e-88
363808144248 uncharacterized protein LOC100792787 [Gl 0.987 0.971 0.685 6e-87
356559530245 PREDICTED: probable aquaporin SIP1-2-lik 0.963 0.959 0.643 9e-87
359806977247 uncharacterized protein LOC100803227 [Gl 0.971 0.959 0.647 3e-86
359482050238 PREDICTED: aquaporin SIP1-2 [Vitis vinif 0.975 1.0 0.701 3e-85
255645205248 unknown [Glycine max] 0.987 0.971 0.674 2e-83
357508577246 Aquaporin SIP1-2 [Medicago truncatula] g 0.975 0.967 0.643 2e-82
>gi|224123670|ref|XP_002319137.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] gi|222857513|gb|EEE95060.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 201/242 (83%), Gaps = 4/242 (1%)

Query: 1   MGPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFN 60
           MG VKAA GD V TFMWVFVSS FG+ T  I +ALG+  LVW P+L   +++F FVF+FN
Sbjct: 1   MGAVKAAIGDAVFTFMWVFVSSMFGLFTNVIVTALGLQTLVWAPVLANASLIFAFVFLFN 60

Query: 61  IIGDALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKH 120
            +G+ LGGA+FNPTGTA+FYA GVG DSL SMALRFPAQAAG+VGG+LAI+E MP +YKH
Sbjct: 61  FLGEFLGGATFNPTGTASFYAAGVGGDSLFSMALRFPAQAAGSVGGSLAILEVMPLQYKH 120

Query: 121 MLGGPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQSNILKTWLVAVATVVLIVTGSA 180
           MLGGP+LQVDL TG +AEGVLTFL+TFAVLVI+LKGP+S++++ W +A  TV L+  GS 
Sbjct: 121 MLGGPTLQVDLQTGGLAEGVLTFLMTFAVLVIILKGPRSSLVQAWFLATVTVTLVSAGST 180

Query: 181 YTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFPPPAPARPAKK 240
           YTGPSMNPA AFGWAYVNKWH+TW+Q YVYWICPFIGA+ A+ +FRVVFPPPAP    K+
Sbjct: 181 YTGPSMNPAFAFGWAYVNKWHNTWEQLYVYWICPFIGAILAAWVFRVVFPPPAP----KQ 236

Query: 241 KK 242
           KK
Sbjct: 237 KK 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224144734|ref|XP_002325395.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] gi|222862270|gb|EEE99776.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388491884|gb|AFK34008.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255045897|gb|ACU00105.1| simple intrinsic protein SIP1.2 [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|363808144|ref|NP_001242735.1| uncharacterized protein LOC100792787 [Glycine max] gi|255639679|gb|ACU20133.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356559530|ref|XP_003548052.1| PREDICTED: probable aquaporin SIP1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|359806977|ref|NP_001241074.1| uncharacterized protein LOC100803227 [Glycine max] gi|255644971|gb|ACU22985.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359482050|ref|XP_002277088.2| PREDICTED: aquaporin SIP1-2 [Vitis vinifera] gi|88604775|gb|ABD46741.1| small basic intrinsic protein 1 [Vitis vinifera] gi|147855139|emb|CAN79588.1| hypothetical protein VITISV_037967 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255645205|gb|ACU23100.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357508577|ref|XP_003624577.1| Aquaporin SIP1-2 [Medicago truncatula] gi|355499592|gb|AES80795.1| Aquaporin SIP1-2 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
TAIR|locus:2146268243 SIP1;2 [Arabidopsis thaliana ( 0.938 0.942 0.486 9.3e-59
TAIR|locus:2103010240 SIP1A "small and basic intrins 0.926 0.941 0.489 2.5e-58
TAIR|locus:2088867253 TIP2 "tonoplast intrinsic prot 0.881 0.849 0.247 4.1e-10
TAIR|locus:2057906251 GAMMA-TIP "gamma tonoplast int 0.881 0.856 0.239 5.2e-10
TAIR|locus:2197279268 TIP3;1 [Arabidopsis thaliana ( 0.360 0.328 0.336 1e-08
TAIR|locus:2030968267 BETA-TIP "beta-tonoplast intri 0.868 0.794 0.230 6.3e-08
ZFIN|ZDB-GENE-040724-152320 aqp4 "aquaporin 4" [Danio reri 0.639 0.487 0.276 2.3e-07
UNIPROTKB|F1NJZ6313 AQP4 "Uncharacterized protein" 0.450 0.351 0.308 3.1e-07
FB|FBgn0015872245 Drip "Drip" [Drosophila melano 0.651 0.648 0.257 6.2e-07
ZFIN|ZDB-GENE-080220-47276 aqp8b "aquaporin 8b" [Danio re 0.639 0.565 0.255 9.1e-07
TAIR|locus:2146268 SIP1;2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 112/230 (48%), Positives = 148/230 (64%)

Query:     1 MGPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAXXXXXXXXXX 60
             M  VK+A GD+V+TF+WV +S+TFG+ T  I SA+G HG+ W P++I+T           
Sbjct:     1 MSAVKSALGDMVITFLWVILSATFGIQTAAIVSAVGFHGITWAPLVISTLVVFVSISIFT 60

Query:    61 XXGDALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKH 120
               G+ LGGASFNP G AAFY  GV SDSL S+A+R P            IME +P KYK 
Sbjct:    61 VIGNVLGGASFNPCGNAAFYTAGVSSDSLFSLAIRSPAQAIGAAGGAITIMEMIPEKYKT 120

Query:   121 MLGG-PSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQSNILKTWXXXXXXXXXXXXGS 179
              +GG PSLQ   H GAI+E VL+F +TF VL+I+L+GP+  + KT+            GS
Sbjct:   121 RIGGKPSLQFGAHNGAISEVVLSFSVTFLVLLIILRGPRKLLAKTFLLALATVSVFVVGS 180

Query:   180 AYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
              +T P MNPA AFGWAY+ K H+TWD FYVYWI  + GA+ ++M+FR++F
Sbjct:   181 KFTRPFMNPAIAFGWAYIYKSHNTWDHFYVYWISSYTGAILSAMLFRIIF 230
GO:0005215 "transporter activity" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0015250 "water channel activity" evidence=IGI;IDA
GO:0046685 "response to arsenic-containing substance" evidence=RCA
TAIR|locus:2103010 SIP1A "small and basic intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088867 TIP2 "tonoplast intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057906 GAMMA-TIP "gamma tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197279 TIP3;1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030968 BETA-TIP "beta-tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040724-152 aqp4 "aquaporin 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJZ6 AQP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0015872 Drip "Drip" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080220-47 aqp8b "aquaporin 8b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5VR89SIP11_ORYSJNo assigned EC number0.62550.88520.8780yesno
Q9FK43SIP12_ARATHNo assigned EC number0.56960.98770.9917yesno
Q9ATM2SIP12_MAIZENo assigned EC number0.64220.88930.8930N/Ano
Q9ATM3SIP11_MAIZENo assigned EC number0.62030.88110.8775N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XIII1897
aquaporin, MIP family, SIP subfamily (239 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 3e-14
pfam00230218 pfam00230, MIP, Major intrinsic protein 1e-11
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 4e-09
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 8e-09
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 3e-08
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 1e-06
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 4e-06
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-04
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 4e-04
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information 
 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 47/174 (27%), Positives = 66/174 (37%), Gaps = 15/174 (8%)

Query: 68  GASFNPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLGG--- 124
           G   NP  T A    G     L+ +     AQ  GA+ GA  +       Y   LG    
Sbjct: 57  GGHINPAVTLALAVGG--RFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNI 114

Query: 125 --------PSLQVDLHTGAIAEGVLTFLITFAVLVIM--LKGPQSNILKTWLVAVATVVL 174
                   PS  V        E + TF++   V        GP    L    + +    +
Sbjct: 115 VAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPPGGLAPLAIGLLVAAI 174

Query: 175 IVTGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVV 228
            + G   TG SMNPA + G A        W  F+VYW+ P IGA+A ++++  V
Sbjct: 175 GLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228

Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms. Length = 228
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 244
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.63
PLN00184 296 aquaporin NIP1; Provisional 99.63
PLN00166 250 aquaporin TIP2; Provisional 99.54
PLN00183 274 putative aquaporin NIP7; Provisional 99.54
PLN00167 256 aquaporin TIP5; Provisional 99.5
cd00333 228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.48
PLN00027 252 aquaporin TIP; Provisional 99.47
PLN00182 283 putative aquaporin NIP4; Provisional 99.46
PRK05420 231 aquaporin Z; Provisional 99.44
PTZ00016 294 aquaglyceroporin; Provisional 99.44
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.36
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.17
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.06
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.02
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 98.95
COG2116265 FocA Formate/nitrite family of transporters [Inorg 90.09
PRK11562268 nitrite transporter NirC; Provisional 81.09
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-54  Score=364.88  Aligned_cols=218  Identities=28%  Similarity=0.471  Sum_probs=188.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcccccChHHHHHHHH
Q 026039            2 GPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGDALGGASFNPTGTAAFYA   81 (244)
Q Consensus         2 ~~~r~~~aEf~gT~~lvf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~SGah~NPavTla~~~   81 (244)
                      +.+|++++||+||++|+|++|+++..+..     ...+.+.+.+++++++.  +++.+|++|++ ||||+|||||+++++
T Consensus         9 ~~~~~~~aEF~~T~~~vf~g~~~~~~~~~-----~~~~~~l~~ial~~Gl~--v~v~i~~~g~i-SGaH~NPAVT~a~~~   80 (238)
T KOG0223|consen    9 SFLRALIAEFLATFLFVFAGCGSVVVNPK-----YGGPVGLLGIALAFGLA--VFVLVYSTGHI-SGAHFNPAVTLAFAV   80 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cCCCchhHHHHHHHHHH--HHHHHhhhccc-cccccCHHHHHHHHH
Confidence            56899999999999999999998875321     11233455666666654  67889999998 999999999999999


Q ss_pred             hccCCcchhHHHHHHHHhhhhHHHHHHHHHHhCccccc-cc--cCCCccCcchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 026039           82 VGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYK-HM--LGGPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQ  158 (244)
Q Consensus        82 ~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~E~~~Tf~lv~~il~~~~~~~~  158 (244)
                      .|++  ++.+++.|+.+|++|+++|+.+++.+.+.+++ +.  ...+.++.+..|+++.|++.||.|+++++.+..|+++
T Consensus        81 ~~~i--sl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~  158 (238)
T KOG0223|consen   81 GGKI--SLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRR  158 (238)
T ss_pred             hCCC--cHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCC
Confidence            9998  99999999999999999999999999988522 11  2246678899999999999999999999995544333


Q ss_pred             CchhHHHHHHHHHHHHHHhcCCCCCCCCChhhhHHHHHhhcCcCCccceehHhhhHHHHHHHHHHHHHHhcCCCC
Q 026039          159 SNILKTWLVAVATVVLIVTGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFPPPA  233 (244)
Q Consensus       159 ~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~~g~al~~~~~~~~~~~wvy~vgP~~Ga~~a~~ly~~~~~~~~  233 (244)
                      + .+.|+.||+++.+.+++.+++||++|||||+|||+++.+   .|++|||||+||++|+++++++|++++.++.
T Consensus       159 ~-~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~  229 (238)
T KOG0223|consen  159 S-ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIPDE  229 (238)
T ss_pred             c-ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccCcc
Confidence            3 789999999999999999999999999999999999987   6999999999999999999999999999883

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 1e-05
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 1e-05
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 1e-05
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 3e-05
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-04
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-04
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-04
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-04
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-04
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure 
Iteration: 1

 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 181 YTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
           YTG SMNPA +FG A +      W+  ++YW+ P IGAV A  ++  VF
Sbjct: 224 YTGASMNPARSFGPAVI---MGNWENHWIYWVGPIIGAVLAGALYEYVF 269
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 5e-21
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-20
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 5e-20
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-19
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 3e-18
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 8e-18
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 3e-17
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-16
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 7e-13
2o9g_A234 Aquaporin Z; integral membrane protein, structural 2e-12
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 3e-11
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 8e-08
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 9e-07
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 40/243 (16%), Positives = 83/243 (34%), Gaps = 15/243 (6%)

Query: 5   KAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGD 64
           +A   + +   +++F      + +                +     +   F      +  
Sbjct: 12  RAVVAEFLAMILFIF----ISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQ 67

Query: 65  ALGGAS---FNPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHM 121
           ++G  S    NP  T           S+L   +   AQ  GA+     +         + 
Sbjct: 68  SVGHISGAHLNPAVTLGLLLSC--QISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNS 125

Query: 122 LGGPSLQVDLHTGA--IAEGVLTFLITFAVL-VIMLKGPQSNILKTWLVAVATVVLIVTG 178
           LG  +L   +++G     E + T  +   VL     +           +  +  +  +  
Sbjct: 126 LGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLA 185

Query: 179 SAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFPPPAPARPA 238
             YTG  +NPA +FG + +      +   +++W+ PFIGA  A +I+  +  P +     
Sbjct: 186 IDYTGCGINPARSFGSSVIT---HNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSDLTD 242

Query: 239 KKK 241
           + K
Sbjct: 243 RVK 245
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.52
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.39
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.33
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.32
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.25
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.25
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.25
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.25
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.24
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.22
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.2
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 99.19
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.18
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 88.99
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.9e-54  Score=364.44  Aligned_cols=219  Identities=22%  Similarity=0.320  Sum_probs=184.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcccccChHHHHHHHH
Q 026039            2 GPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGDALGGASFNPTGTAAFYA   81 (244)
Q Consensus         2 ~~~r~~~aEf~gT~~lvf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~SGah~NPavTla~~~   81 (244)
                      +++|++++||+||++|+|+++++++..  ..+. ..++.++..++++|+++  +++.+|+++++ ||||+|||||+++++
T Consensus         2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~--~~~~-~~~~~~~~~ia~~~Gl~--v~~~v~~~g~i-SGaHlNPAVTla~~~   75 (223)
T 3gd8_A            2 AFWKAVTAEFLAMLIFVLLSLGSTINW--GGTE-KPLPVDMVLISLCFGLS--IATMVQCFGHI-SGGHINPAVTVAMVC   75 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCT--TTTT-SCCCCCHHHHHHHHHHH--HHHHHHHHHHH-HCCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCC-CCCCcchHHHHHHHHHH--HHHHHheeccc-ccceEcHHHHHHHHH
Confidence            478999999999999999999987632  1111 11234556666666655  56788999998 999999999999999


Q ss_pred             hccCCcchhHHHHHHHHhhhhHHHHHHHHHHhCccccccccC--CCccCcchHHHHHHHHHHHHHHHHHHHHHhccCCC-
Q 026039           82 VGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLG--GPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQ-  158 (244)
Q Consensus        82 ~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~E~~~Tf~lv~~il~~~~~~~~-  158 (244)
                      .|++  +|++++.|+++|++||++|+.+++.+++++....++  .+.++.+..++++.|+++||+|+++++...|++++ 
T Consensus        76 ~g~~--~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~  153 (223)
T 3gd8_A           76 TRKI--SIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTD  153 (223)
T ss_dssp             TTSS--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSC
T ss_pred             cCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            9998  999999999999999999999999999876544443  23456788999999999999999999998875432 


Q ss_pred             CchhHHHHHHHHHHHHHHhcCCCCCCCCChhhhHHHHHhhcCcCCccceehHhhhHHHHHHHHHHHHHHhcCC
Q 026039          159 SNILKTWLVAVATVVLIVTGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFPP  231 (244)
Q Consensus       159 ~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~~g~al~~~~~~~~~~~wvy~vgP~~Ga~~a~~ly~~~~~~  231 (244)
                      .....|+.||+++...+..++++||++||||||||||++.+   +|+++||||+||++|+++++++|++++.|
T Consensus       154 ~~~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~---~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p  223 (223)
T 3gd8_A          154 VTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGGLYEYVFCP  223 (223)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCCccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc---CCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence            23467999999998888888889999999999999999986   79999999999999999999999998764
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 244
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-16
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 4e-13
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 1e-09
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-07
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (183), Expect = 1e-16
 Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 5/231 (2%)

Query: 5   KAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGD 64
           +A   + +   +++F+S    +       +    G V   + ++ A       +   +G 
Sbjct: 12  RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71

Query: 65  ALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLGG 124
            + GA  NP  T         S     M +      A      L+ +    P     L  
Sbjct: 72  -ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNA 130

Query: 125 PSLQVDLHTGAIAEGVLTFLITFAVLVI-MLKGPQSNILKTWLVAVATVVLIVTGSAYTG 183
            +  V+   G   E + T  +   VL     +           +  +  +  +    YTG
Sbjct: 131 LAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTG 190

Query: 184 PSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFPPPAP 234
             +NPA +FG + +      +   +++W+ PFIGA  A +I+  +  P + 
Sbjct: 191 CGINPARSFGSSVI---THNFQDHWIFWVGPFIGAALAVLIYDFILAPRSS 238
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.42
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.27
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.2
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.11
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-52  Score=353.19  Aligned_cols=222  Identities=23%  Similarity=0.315  Sum_probs=187.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcccccChHHHHHHHH
Q 026039            2 GPVKAAAGDLVLTFMWVFVSSTFGVLTTEIASALGVHGLVWPPMLITTAIVFVFVFIFNIIGDALGGASFNPTGTAAFYA   81 (244)
Q Consensus         2 ~~~r~~~aEf~gT~~lvf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~SGah~NPavTla~~~   81 (244)
                      |+||++++||+|||+++|+++++...+.   +    ++.+...++++|+  +.+.+.++.++++ ||||+|||||+++++
T Consensus         3 s~~r~~laEf~GT~~lvf~g~gs~~~~~---~----~~~~~~~ial~~G--~~v~~~i~~~g~i-SGaH~NPAVTla~~~   72 (234)
T d1ymga1           3 SFWRAICAEFFASLFYVFFGLGASLRWA---P----GPLHVLQVALAFG--LALATLVQAVGHI-SGAHVNPAVTFAFLV   72 (234)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCSCC--------CHHHHHHHHHHHH--HHHHHHHHHHTTT-TCCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccC---C----CCcchHHHHHHHH--HHHHHHHHHHhcc-ccCccCchhhHHHHh
Confidence            7899999999999999999998765321   0    1112334444555  4467889999998 999999999999999


Q ss_pred             hccCCcchhHHHHHHHHhhhhHHHHHHHHHHhCccccccccC--CCccCcchHHHHHHHHHHHHHHHHHHHHHhccCCC-
Q 026039           82 VGVGSDSLLSMALRFPAQAAGAVGGALAIMEYMPPKYKHMLG--GPSLQVDLHTGAIAEGVLTFLITFAVLVIMLKGPQ-  158 (244)
Q Consensus        82 ~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~E~~~Tf~lv~~il~~~~~~~~-  158 (244)
                      .|++  ++++++.|+++|++||++|+.+++.+++++..+...  .+.++.+..++++.|++.|++++++++.+.+++++ 
T Consensus        73 ~g~i--~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~  150 (234)
T d1ymga1          73 GSQM--SLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNG  150 (234)
T ss_dssp             TTSS--CHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCS
T ss_pred             ccCC--ChhheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCccC
Confidence            9998  999999999999999999999999999877654332  34567888999999999999999999999875433 


Q ss_pred             CchhHHHHHHHHHHHHHHhcCCCCCCCCChhhhHHHHHhhcCcCCccceehHhhhHHHHHHHHHHHHHHhcCCCCCCCCc
Q 026039          159 SNILKTWLVAVATVVLIVTGSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVFPPPAPARPA  238 (244)
Q Consensus       159 ~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~~g~al~~~~~~~~~~~wvy~vgP~~Ga~~a~~ly~~~~~~~~~~~~~  238 (244)
                      .....++.+|+.+.+..+..++.||+++|||||+||+++++   .|+++|+||++|++|+++++++|++++.++.++.+|
T Consensus       151 ~~~~~~l~ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~---~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~~~~  227 (234)
T d1ymga1         151 RLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSE  227 (234)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCCHHH
T ss_pred             cCcceeEeehHHHHHHHHHhcccccccccchhhhhHHHhcc---CccCeeeeehHHHHHHHHHHHHHHHHHcCCCcchhh
Confidence            33356899999999999999999999999999999999987   799999999999999999999999998877655443
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure