Citrus Sinensis ID: 026046

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
MSVSTSTTEGNQASSGDDKYPIPLTSYINTISSSSSTSSRSGSTSSIMSEIEEEEEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRLHQKLARSR
ccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEEEEcccccHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHccccEEEEcccccccHHHccccccc
ccEccccccccccccccccccccccEEEEcccccccHHHccccccccEccccccccHcccccccccccHHHHHHHHcccccccccccccccccccEEEEEcccccccccccEEEEEEccccccHHHHHHHHHHHcccccEEEEEEEcccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHHccccEEEEEcccccHHHHHcccccc
msvststtegnqassgddkypipltsyintissssstssrsgstssiMSEIEeeeeeeenynssrsnsSQLLSeindgngmpmplapikeeiessffsfdvangngtqeeDIIYVAVGKSQSSMDALSWTLrhavnpstLIFLIHVfpqvkfvpsplgklprnqvnpeQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRLHQKLARSR
msvststtegnqassgddkypiPLTSYIntissssstssrsgstsSIMSEIEEEEEeeenynssrsnsSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILdlipvlnirklvvgttksslrlhqklarsr
MSVSTSTTEGNQASSGDDKYPIPLtsyintissssstssrsgstssimseieeeeeeeenynssrsnssQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRLHQKLARSR
**********************************************************************************************SFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL*************************QLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT**************
*******************YPIPLTSYINT**********************************************************************************IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPR*************QETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGT*KS*****Q******
***************GDDKYPIPLTSYINTI***************************************LLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRLHQKLARSR
*****************DKYPIPLTSYINTIS*************************************QLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKS************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
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MSVSTSTTEGNQASSGDDKYPIPLTSYINTISSSSSTSSRSGSTSSIMSEIEEEEEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRLHQKLARSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query244 2.2.26 [Sep-21-2011]
Q8GUH1 834 U-box domain-containing p no no 0.475 0.139 0.327 8e-09
Q9SW11 835 U-box domain-containing p no no 0.5 0.146 0.25 4e-06
Q683D5 400 U-box domain-containing p no no 0.438 0.267 0.260 2e-05
Q9FGD7 765 Putative U-box domain-con no no 0.336 0.107 0.321 7e-05
Q8GZ84 435 U-box domain-containing p no no 0.487 0.273 0.270 0.0003
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2 Back     alignment and function desciption
 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 113 IYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLE 171
           I+VAV K    S   L W L++       I LIHV    + +P    K P   V  E++ 
Sbjct: 47  IFVAVDKHVAKSKSTLIWALQNTGGKK--ICLIHVHQPSQMIPLMGAKFPVGAVKEEEVR 104

Query: 172 TFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230
            F  +E  K   +L  +L  C Q  V  + + IE + +   I+ LI  L IRKLV+G  
Sbjct: 105 VFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMGAA 163
Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2 Back     alignment and function description
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1 Back     alignment and function description
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
224089553289 predicted protein [Populus trichocarpa] 0.684 0.577 0.560 4e-52
255579152264 ATP binding protein, putative [Ricinus c 0.700 0.647 0.592 2e-51
225467979275 PREDICTED: U-box domain-containing prote 0.635 0.563 0.609 2e-51
296083524223 unnamed protein product [Vitis vinifera] 0.598 0.654 0.635 3e-51
356555775246 PREDICTED: U-box domain-containing prote 0.524 0.520 0.630 4e-45
388491918254 unknown [Lotus japonicus] 0.504 0.484 0.656 5e-44
356522087295 PREDICTED: U-box domain-containing prote 0.672 0.555 0.541 7e-43
356532376 449 PREDICTED: uncharacterized protein LOC10 0.504 0.273 0.632 5e-42
351728033246 uncharacterized protein LOC100527773 [Gl 0.540 0.536 0.614 2e-41
449434410279 PREDICTED: uncharacterized protein LOC10 0.504 0.440 0.596 6e-40
>gi|224089553|ref|XP_002308753.1| predicted protein [Populus trichocarpa] gi|222854729|gb|EEE92276.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/182 (56%), Positives = 141/182 (77%), Gaps = 15/182 (8%)

Query: 55  EEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIY 114
           E EEE Y+S        L EIN G    +PL  IKE+IE S FSFDV    G  ++D +Y
Sbjct: 44  EIEEEKYSSD-------LFEINHG----VPLESIKEDIEGSVFSFDVY---GEHQKDCVY 89

Query: 115 VAVGKSQSSMDALSWTLRHAV-NPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETF 173
           V VGKS+SSMDALSWTL++A+ + +T++FLIH+FP++ ++PSPLG+LP++QV+ +Q+E +
Sbjct: 90  VGVGKSESSMDALSWTLKNAIIDSNTMVFLIHIFPEIHYIPSPLGRLPKSQVSAQQVENY 149

Query: 174 MAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSS 233
           MAQE  KRR+LLQKF++ CS SKV VDT+L+ESD V KA++DLI V+N+RKL++GT+KS+
Sbjct: 150 MAQERDKRRELLQKFINMCSASKVKVDTILVESDAVGKAMMDLITVVNMRKLILGTSKSN 209

Query: 234 LR 235
           LR
Sbjct: 210 LR 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579152|ref|XP_002530423.1| ATP binding protein, putative [Ricinus communis] gi|223530031|gb|EEF31954.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225467979|ref|XP_002269050.1| PREDICTED: U-box domain-containing protein 33 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083524|emb|CBI23514.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555775|ref|XP_003546205.1| PREDICTED: U-box domain-containing protein 35-like [Glycine max] Back     alignment and taxonomy information
>gi|388491918|gb|AFK34025.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356522087|ref|XP_003529681.1| PREDICTED: U-box domain-containing protein 33-like [Glycine max] Back     alignment and taxonomy information
>gi|356532376|ref|XP_003534749.1| PREDICTED: uncharacterized protein LOC100777008 [Glycine max] Back     alignment and taxonomy information
>gi|351728033|ref|NP_001237181.1| uncharacterized protein LOC100527773 [Glycine max] gi|255633178|gb|ACU16945.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449434410|ref|XP_004134989.1| PREDICTED: uncharacterized protein LOC101213489 [Cucumis sativus] gi|449520169|ref|XP_004167106.1| PREDICTED: uncharacterized LOC101213489 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
TAIR|locus:2050669 834 AT2G45910 [Arabidopsis thalian 0.479 0.140 0.325 4.8e-09
TAIR|locus:2117343 835 AT4G25160 [Arabidopsis thalian 0.495 0.144 0.252 1.6e-06
TAIR|locus:504954932 789 AT5G57035 [Arabidopsis thalian 0.495 0.153 0.288 2e-06
TAIR|locus:2082802 294 AT3G61410 "AT3G61410" [Arabido 0.487 0.404 0.264 1.1e-05
TAIR|locus:2061012 788 AT2G24370 [Arabidopsis thalian 0.508 0.157 0.266 9.6e-05
TAIR|locus:2128131 764 AT4G31230 [Arabidopsis thalian 0.532 0.170 0.240 0.00016
TAIR|locus:2050659 400 AT2G45920 [Arabidopsis thalian 0.270 0.165 0.333 0.00018
TAIR|locus:2098816 435 AT3G61390 [Arabidopsis thalian 0.528 0.296 0.272 0.0004
TAIR|locus:2050669 AT2G45910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 146 (56.5 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 39/120 (32%), Positives = 58/120 (48%)

Query:   110 EDIIYVAVGKSQS-SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPE 168
             ++ I+VAV K  + S   L W L++       I LIHV    + +P    K P   V  E
Sbjct:    44 DEKIFVAVDKHVAKSKSTLIWALQNTGGKK--ICLIHVHQPSQMIPLMGAKFPVGAVKEE 101

Query:   169 QLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVG 228
             ++  F  +E  K   +L  +L  C Q  V  + + IE + +   I+ LI  L IRKLV+G
Sbjct:   102 EVRVFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMG 161
GO:0000151 "ubiquitin ligase complex" evidence=IEA
GO:0004672 "protein kinase activity" evidence=IEA
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016301 "kinase activity" evidence=ISS
GO:0016567 "protein ubiquitination" evidence=IEA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
TAIR|locus:2117343 AT4G25160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954932 AT5G57035 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082802 AT3G61410 "AT3G61410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061012 AT2G24370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128131 AT4G31230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050659 AT2G45920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098816 AT3G61390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00060048
hypothetical protein (289 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 1e-21
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 2e-10
pfam00582139 pfam00582, Usp, Universal stress protein family 0.001
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
 Score = 87.3 bits (217), Expect = 1e-21
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLE 171
            + VAV K + S +AL W L +       I L+HV P +  +PS  GKL       ++ +
Sbjct: 1   SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEED 60

Query: 172 TFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVG 228
                   + ++LL  +   CS+  V  + V++E D VAKAI++ +    I KLV+G
Sbjct: 61  K-------EAKELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMG 110

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding. Length = 146
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 244
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.84
PRK09982142 universal stress protein UspD; Provisional 99.8
PRK15456142 universal stress protein UspG; Provisional 99.77
PRK15005144 universal stress protein F; Provisional 99.77
PRK15118144 universal stress global response regulator UspA; P 99.75
PRK10116142 universal stress protein UspC; Provisional 99.68
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.63
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.61
cd01987124 USP_OKCHK USP domain is located between the N-term 99.61
PRK11175 305 universal stress protein UspE; Provisional 99.58
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.56
PRK11175305 universal stress protein UspE; Provisional 99.51
cd00293130 USP_Like Usp: Universal stress protein family. The 99.51
COG0589154 UspA Universal stress protein UspA and related nuc 99.33
PRK10490 895 sensor protein KdpD; Provisional 98.77
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 98.57
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 97.06
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 97.05
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 96.43
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 96.25
PLN03159832 cation/H(+) antiporter 15; Provisional 94.8
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 94.5
PRK10696 258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 93.59
COG0037 298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 92.52
PRK12342 254 hypothetical protein; Provisional 91.23
TIGR00268 252 conserved hypothetical protein TIGR00268. The N-te 90.48
PLN03159 832 cation/H(+) antiporter 15; Provisional 89.42
COG2086 260 FixA Electron transfer flavoprotein, beta subunit 87.9
TIGR00342371 thiazole biosynthesis/tRNA modification protein Th 87.44
PRK10660 436 tilS tRNA(Ile)-lysidine synthetase; Provisional 87.19
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 86.64
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 86.19
PRK13820 394 argininosuccinate synthase; Provisional 84.66
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 84.42
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 84.41
cd01712177 ThiI ThiI is required for thiazole synthesis in th 83.76
PRK03359 256 putative electron transfer flavoprotein FixA; Revi 83.26
TIGR03556 471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 81.95
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 81.21
cd01985181 ETF The electron transfer flavoprotein (ETF) serve 80.95
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
Probab=99.84  E-value=3.3e-20  Score=149.44  Aligned_cols=118  Identities=31%  Similarity=0.522  Sum_probs=96.3

Q ss_pred             EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhH
Q 026046          112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT  191 (244)
Q Consensus       112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~  191 (244)
                      +||||+|+|+.|++||+||++++...+++|++|||+++.....+..+       .......+.++.++.++++|+++.+.
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~   73 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG-------KLEVASAYKQEEDKEAKELLLPYRCF   73 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCcc-------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999989999999999976532221111       01233445556667888899999999


Q ss_pred             hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHH
Q 026046          192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRL  236 (244)
Q Consensus       192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrR  236 (244)
                      |...+++++..++.|+++++.|+++|++.++|+||||+| ++++.|
T Consensus        74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~  119 (146)
T cd01989          74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSM  119 (146)
T ss_pred             HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceee
Confidence            988899999888888667899999999999999999999 788855

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 1e-06
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 1e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.7 bits (115), Expect = 7e-07
 Identities = 30/238 (12%), Positives = 67/238 (28%), Gaps = 69/238 (28%)

Query: 47  IMSEIEEE----EEEEENYNSSRS---NSSQLLSEINDGNGMPMPLAPIKEEIESSFFSF 99
           +MS I+ E          Y   R    N +Q+ ++ N      +       ++  +    
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN------VSRLQPYLKLRQALLEL 147

Query: 100 DVANGNGTQEEDIIYVAV------GKS------------QSSMD-ALSW-TLRHAVNPST 139
             A            V +      GK+            Q  MD  + W  L++  +P T
Sbjct: 148 RPAK----------NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 140 LI-----FLIHVFPQVKFVPSPLGKLPRNQVN-PEQLETFMAQETGKR----------RQ 183
           ++      L  + P           +     +   +L   +  +  +            +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 184 LLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRLHQKLA 241
               F  +C   K+++ T         K + D +       + +     +L   +  +
Sbjct: 258 AWNAFNLSC---KILLTT----RF---KQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.8
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.78
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.76
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.76
3fg9_A156 Protein of universal stress protein USPA family; A 99.75
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.74
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.73
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.72
3fdx_A143 Putative filament protein / universal stress PROT; 99.7
3tnj_A150 Universal stress protein (USP); structural genomic 99.7
2z08_A137 Universal stress protein family; uncharacterized c 99.69
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.69
3dlo_A155 Universal stress protein; unknown function, struct 99.68
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.61
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.6
3olq_A 319 Universal stress protein E; structural genomics, P 99.6
3olq_A319 Universal stress protein E; structural genomics, P 99.58
3loq_A 294 Universal stress protein; structural genomics, PSI 99.55
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.55
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.54
3loq_A294 Universal stress protein; structural genomics, PSI 99.53
3ab8_A 268 Putative uncharacterized protein TTHA0350; tandem- 99.53
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.47
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.38
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 94.63
1wy5_A 317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 94.2
1ni5_A 433 Putative cell cycle protein MESJ; structural genom 90.16
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 86.93
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 82.15
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
Probab=99.80  E-value=5.3e-19  Score=139.61  Aligned_cols=118  Identities=14%  Similarity=0.117  Sum_probs=98.2

Q ss_pred             CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 026046          109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF  188 (244)
Q Consensus       109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~  188 (244)
                      .+++||||+|+|+.+.+|++||+.+|...+++|+++||+++......  +       .......+.+..++.+++.|+++
T Consensus         4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~l~~~   74 (146)
T 3s3t_A            4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTP--A-------LDPVLSELLDAEAAHAKDAMRQR   74 (146)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCG--G-------GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc--c-------cccccHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999988999999999987643211  0       00123445566677888899999


Q ss_pred             HhHhhcCCC-cEEEEEEEcCCHHHHHHH-HhhhCCCcEEEECCC-CCChHH
Q 026046          189 LDTCSQSKV-MVDTVLIESDLVAKAILD-LIPVLNIRKLVVGTT-KSSLRL  236 (244)
Q Consensus       189 ~~~~~~~gV-~ve~vvveGd~vaeaIle-~A~e~~aDLIVmGS~-r~GlrR  236 (244)
                      .+.+...|+ +++..+..|++ +++|++ +|++.++||||||+| ++++.+
T Consensus        75 ~~~~~~~g~~~~~~~~~~g~~-~~~I~~~~a~~~~~dliV~G~~~~~~~~~  124 (146)
T 3s3t_A           75 QQFVATTSAPNLKTEISYGIP-KHTIEDYAKQHPEIDLIVLGATGTNSPHR  124 (146)
T ss_dssp             HHHHTTSSCCCCEEEEEEECH-HHHHHHHHHHSTTCCEEEEESCCSSCTTT
T ss_pred             HHHHHhcCCcceEEEEecCCh-HHHHHHHHHhhcCCCEEEECCCCCCCcce
Confidence            999988899 99988888965 799999 999999999999999 777766
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 244
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 3e-07
d1mjha_160 c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa 2e-04
d1jmva_140 c.26.2.4 (A:) Universal stress protein A, UspA {Ha 6e-04
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 10/126 (7%)

Query: 113 IYVAV---------GKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRN 163
           + VAV           S S   A  WTL   V  +T  F I +             +   
Sbjct: 4   VMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSI 63

Query: 164 QVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIR 223
             +PE           K   LL+ F++ C +  V  +   I++      I   +  +   
Sbjct: 64  YASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAW-IKTGDPKDVICQEVKRVRPD 122

Query: 224 KLVVGT 229
            LVVG+
Sbjct: 123 FLVVGS 128
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160 Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.84
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.81
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.79
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.78
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.73
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.72
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 95.65
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 92.94
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 92.12
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 85.83
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 84.51
d3clsc1 262 Small, beta subunit of electron transfer flavoprot 81.73
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.84  E-value=1.4e-20  Score=150.18  Aligned_cols=127  Identities=13%  Similarity=0.136  Sum_probs=99.2

Q ss_pred             CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCC-----CCCCCCCCChhHHHHHHHHHHHHHHH
Q 026046          109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL-----GKLPRNQVNPEQLETFMAQETGKRRQ  183 (244)
Q Consensus       109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~-----g~~~~~~~~~e~~~~~~~~~~e~a~~  183 (244)
                      .+||||||+|+|+.+++|++||+.+|+..+++|+|+||+++........     +.........+....+.+...+++++
T Consensus         2 m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1mjha_           2 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN   81 (160)
T ss_dssp             CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             CcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999997654322110     00001111223334455666778889


Q ss_pred             HHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHH
Q 026046          184 LLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRL  236 (244)
Q Consensus       184 lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrR  236 (244)
                      .|+++...+...|++++..+..|++ ++.|+++|++.++||||||+| ++++++
T Consensus        82 ~l~~~~~~~~~~gv~~~~~~~~G~~-~~~I~~~a~~~~~dliV~G~~~~~~~~~  134 (160)
T d1mjha_          82 KMENIKKELEDVGFKVKDIIVVGIP-HEEIVKIAEDEGVDIIIMGSHGKTNLKE  134 (160)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEEECH-HHHHHHHHHHTTCSEEEEESCCSSCCTT
T ss_pred             HHHHHHHHHHhcCCeEEEEEEeccH-HHHHhhhhhccccceEEeccCCCCcccc
Confidence            9999999999999999999998865 799999999999999999999 788866
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure