Citrus Sinensis ID: 026057

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccccccccccEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEccccEEEcccccEEEEEEccccccccccccEEEEEEEEcccEEEEEccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEccccccccccccccccccEEcccccccccccccEEEEEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHccccccEEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccccEcccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mkcrrptctdyiislncddvskgsstyigrlrsnflgtkftiydghppnaearVTKCRSTRqvnmkqvspkllagnyHVAHISYELNvlgsrgprrmqcvmdaipassiepggvaptqtefhhsgldsfpsipffrsksiraenfqnDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASlengvagqehENVILQFgkvgkdvftmdyQYPISAFQAFAICLSSfdtkiace
Flexible Loop (DISEMBL)
mkcrrptctdyiislncddvskgSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Low Complexity Region (SEG)
MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Disordered region (IsUnstruct)
******TCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHP*****RVTKC*****VNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAI************************FPSIPFFR*************KEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKI***
Disordered Region (DISOPRED)
******TCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGH*****************************NYHVAHISYELNVLGSRGPRRMQCV***************************************************GLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Disordered Region (DISEMBL)
********TDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Disordered Region (DISPRO)
MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHP*****************MKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSI****************************************KEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIAC*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q8VY21	406	Tubby-like F-box protein	yes	no	0.987	0.593	0.808	1e-109
Q10LG8	403	Tubby-like F-box protein	no	no	0.995	0.602	0.731	1e-105
Q8H485	406	Tubby-like F-box protein	no	no	0.983	0.591	0.690	7e-98
Q75HX5	445	Tubby-like F-box protein	no	no	0.987	0.541	0.535	3e-77
Q6NPQ1	389	Tubby-like F-box protein	no	no	0.967	0.606	0.593	8e-77
Q9SQU1	380	Tubby-like F-box protein	no	no	0.959	0.615	0.608	1e-76
Q6Z2G9	428	Tubby-like F-box protein	no	no	0.991	0.565	0.568	3e-75
Q2QXB2	445	Tubby-like F-box protein	no	no	0.983	0.539	0.530	2e-74
Q7XSV4	462	Tubby-like F-box protein	no	no	0.995	0.525	0.49	1e-72
Q9FRH7	445	Tubby-like F-box protein	no	no	0.954	0.523	0.507	2e-72

>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/246 (80%), Positives = 218/246 (88%), Gaps = 5/246 (2%)

Query: 4   RRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQV 63
           RRPTCTDYIISLNCDDVS+GS+TYIG+LRSNFLGTKFT+YD  P N   +VT+ RS+R +
Sbjct: 161 RRPTCTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLL 220

Query: 64  NMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHH 123
           ++KQVSP++ +GNY VAHISYELNVLGSRGPRRMQCVMDAIPAS++EPGG APTQTE  H
Sbjct: 221 SLKQVSPRIPSGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVH 280

Query: 124 SGLDSFPSIPFFRSKSIRAENFQND-----QKEGLLVLRNKAPRWHEQLQCWCLNFNGRV 178
           S LDSFPS  FFRSKSIRAE+  +      QKEGLLVL+NKAPRWHEQLQCWCLNFNGRV
Sbjct: 281 SNLDSFPSFSFFRSKSIRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRV 340

Query: 179 TVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 238
           TVASVKNFQLVA+ ENG AG EHENVILQFGKVGKDVFTMDYQYPISAFQAF ICLSSFD
Sbjct: 341 TVASVKNFQLVAAPENGPAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFD 400

Query: 239 TKIACE 244
           TKIACE
Sbjct: 401 TKIACE 406

Arabidopsis thaliana (taxid: 3702)

>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/246 (73%), Positives = 208/246 (84%), Gaps = 3/246 (1%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           KCR+PTCTDY+ISL+  D+SKGS+TYIG+LRSNFLGTKFT+YD HPP   A V+K RS R
Sbjct: 158 KCRKPTCTDYLISLDMSDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSAR 217

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
            V + QVSP++ AGNY V+HISYELNVLG+RGPRRM C+MD+IP S+++ GG APTQTEF
Sbjct: 218 VVGLNQVSPRVPAGNYPVSHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEF 277

Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQND---QKEGLLVLRNKAPRWHEQLQCWCLNFNGRV 178
             SGLDSFPSI FFRSKS R ++  +    QKE  LVL+NK+PRWHEQLQCWCLNF GRV
Sbjct: 278 PLSGLDSFPSISFFRSKSARIDSATSQLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRV 337

Query: 179 TVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 238
           TVASVKNFQLVAS ENG   QE + VILQFGK+GKD+FTMDY+YPISAFQ+FAICLSSFD
Sbjct: 338 TVASVKNFQLVASDENGPTNQEQDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFD 397

Query: 239 TKIACE 244
           TKIACE
Sbjct: 398 TKIACE 403

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1

 Score =  356 bits (914), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 172/249 (69%), Positives = 202/249 (81%), Gaps = 9/249 (3%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           KCRR TCT+Y+ISL+ +D+SK + +Y+G+LRSNFLGTKFTIYD HPP A   ++K +S R
Sbjct: 161 KCRRTTCTEYLISLDMNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAGDVISKGQSAR 220

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
            +    +SP++ AGNY V+HISYELNVLGSRGPRRM C MD+IP S+IE GG APTQTEF
Sbjct: 221 VIGSNHLSPRIPAGNYPVSHISYELNVLGSRGPRRMHCAMDSIPVSAIEQGGTAPTQTEF 280

Query: 122 HHSGLDSFPSIPFFRSKSIRAEN------FQNDQKEGLLVLRNKAPRWHEQLQCWCLNFN 175
             S  +SF SIPFF+SKS+RA N       QN  K   LVL+NK+PRWHE LQCWCLNF+
Sbjct: 281 PLSYHESFTSIPFFKSKSVRANNSTASLLTQNGSK---LVLKNKSPRWHEHLQCWCLNFH 337

Query: 176 GRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLS 235
           GRVTVASVKNFQLVAS E+    QEH++VILQFGKVGKD+FTMDY+YPISAFQAFAICLS
Sbjct: 338 GRVTVASVKNFQLVASDESNPTNQEHDDVILQFGKVGKDMFTMDYRYPISAFQAFAICLS 397

Query: 236 SFDTKIACE 244
           SFDTKIACE
Sbjct: 398 SFDTKIACE 406

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1

 Score =  288 bits (737), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 149/278 (53%), Positives = 186/278 (66%), Gaps = 37/278 (13%)

Query: 4   RRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKC-RSTRQ 62
           R+ TCT+Y+IS++ D++S+ SSTYIG+LRSNFLGTKF IYD  P    A +    RS+R+
Sbjct: 168 RKTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRR 227

Query: 63  VNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE-- 120
            N K+VSPK+ +G+Y++A ++YELNVLG+RGPRRM CVM +IPASS+EPGG+ P Q E  
Sbjct: 228 FNSKKVSPKMPSGSYNIAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQI 287

Query: 121 FHHSGLDSFPSIPFFRSKSIRAENF-------------------------QNDQKEGLLV 155
              +  +SF S   F   SI   +                          +   KE  LV
Sbjct: 288 VPRAFEESFRSTTSFSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLV 347

Query: 156 LRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGV---------AGQEHENVIL 206
           LRNKAPRWHEQLQCWCLNF GRVT+ASVKNFQL+A+              A  E + +IL
Sbjct: 348 LRNKAPRWHEQLQCWCLNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPPEQDKIIL 407

Query: 207 QFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 244
           QFGKV KD+FTMDY+YP+SAFQAFAICLSSFDTK+ACE
Sbjct: 408 QFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6NPQ1|TLP11_ARATH Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1

 Score =  286 bits (733), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 149/251 (59%), Positives = 182/251 (72%), Gaps = 15/251 (5%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGH--PPNAEARVTKCRS 59
           K +  TCTDYIISL  DD+S+ S  Y+G++RSNFLGTKFT++DG+  P    A   K R 
Sbjct: 146 KLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNFLGTKFTVFDGNLLPSTGAA---KLRK 202

Query: 60  TRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQT 119
           +R  N  +VS K+  G+Y VAHI+YELNVLGSRGPR+MQC+MD IP S++EP GVA   +
Sbjct: 203 SRSYNPAKVSAKVPLGSYPVAHITYELNVLGSRGPRKMQCLMDTIPTSTMEPQGVASEPS 262

Query: 120 EFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVT 179
           EF   G  S  S    RS+S    +  +  KE  LVL NK PRWHEQL+CWCLNF+GRVT
Sbjct: 263 EFPLLGTRSTLS----RSQSKPLRSSSSHLKETPLVLSNKTPRWHEQLRCWCLNFHGRVT 318

Query: 180 VASVKNFQLVASLENGVAG------QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAIC 233
           VASVKNFQLVA+  +  +G      ++ E +ILQFGKVGKD+FTMDY YPISAFQAFAIC
Sbjct: 319 VASVKNFQLVAAGASCGSGTGMSPERQSERIILQFGKVGKDMFTMDYGYPISAFQAFAIC 378

Query: 234 LSSFDTKIACE 244
           LSSF+T+IACE
Sbjct: 379 LSSFETRIACE 389

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQU1|TLP9_ARATH Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1

 Score =  286 bits (731), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/250 (60%), Positives = 185/250 (74%), Gaps = 16/250 (6%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           K +R TCTDYIISL  DD+SK S+ Y+GR+RSNFLGTKFT++DG    A A++ K RS+ 
Sbjct: 140 KLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGTKFTVFDGSQTGA-AKMQKSRSS- 197

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
             N  +VSP++  G+Y +AHISYELNVLGSRGPRRM+C+MD IP S +E  GV  + +  
Sbjct: 198 --NFIKVSPRVPQGSYPIAHISYELNVLGSRGPRRMRCIMDTIPMSIVESRGVVASTSIS 255

Query: 122 HHSGLDSFPSIPFFRS--KSIRAENFQ-----NDQKEGLLVLRNKAPRWHEQLQCWCLNF 174
             S   S    P FRS  K +R+ +       N+  +  LVL NKAPRWHEQL+CWCLNF
Sbjct: 256 SFSSRSS----PVFRSHSKPLRSNSASCSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNF 311

Query: 175 NGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICL 234
           +GRVTVASVKNFQLVA + +  AGQ  E +ILQFGKVGKD+FTMDY YPISAFQAFAICL
Sbjct: 312 HGRVTVASVKNFQLVA-VSDCEAGQTSERIILQFGKVGKDMFTMDYGYPISAFQAFAICL 370

Query: 235 SSFDTKIACE 244
           SSF+T+IACE
Sbjct: 371 SSFETRIACE 380

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to ABA during seed germination and early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1

 Score =  281 bits (719), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/255 (56%), Positives = 176/255 (69%), Gaps = 13/255 (5%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           K RR T T ++ISL  +D S  SSTY+G+L+ NFLGTKFTI+D  PP     +   R ++
Sbjct: 175 KIRRATRTSFVISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPNNRPSK 234

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
           + + KQVSP+L  GNY+VA +SYEL VL +RGPRRMQC M +IPA  I+ GG APT T  
Sbjct: 235 R-HFKQVSPRLPLGNYNVATVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAPTPTGI 293

Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQNDQKEGL----------LVLRNKAPRWHEQLQCWC 171
            HS  +  P++   + K    E         L          LVL+NKAPRWHEQLQCWC
Sbjct: 294 IHSLDEQVPALSTSKGKEPAIEFSSTSLSADLSGPVCTNEVPLVLKNKAPRWHEQLQCWC 353

Query: 172 LNFNGRVTVASVKNFQLVASLEN--GVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQA 229
           LNF GRVTVASVKNFQLVAS++   G+   E E VILQFGK+GKD+FTMDY+YP+SAFQA
Sbjct: 354 LNFRGRVTVASVKNFQLVASVDPSLGIPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQA 413

Query: 230 FAICLSSFDTKIACE 244
           FAICL+SFDTK ACE
Sbjct: 414 FAICLTSFDTKPACE 428

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/277 (53%), Positives = 183/277 (66%), Gaps = 37/277 (13%)

Query: 5   RPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKC-RSTRQV 63
           R TCT+Y I ++ D+ S+ S+ YIG+LRSN LGTKF IYD  PP   A V++  +++R+ 
Sbjct: 169 RATCTEYTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRF 228

Query: 64  NMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE--F 121
             ++VSPK  +  Y +A +SYELNVLG+RGPRRM CVM +IPASS+E GG  P Q +   
Sbjct: 229 YSRKVSPKNPSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVL 288

Query: 122 HHSGLDSFPSIPFFRS----KSIR-------------------AENFQNDQKEGLLVLRN 158
             S  +SF SI F +S    +SIR                   A    ++ KE  L+LRN
Sbjct: 289 ARSLDESFGSISFSKSSIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRN 348

Query: 159 KAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQ-----------EHENVILQ 207
           KAPRWHEQLQCWCLNF GRVTVASVKNFQLVA+ +                 +H+ VILQ
Sbjct: 349 KAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQ 408

Query: 208 FGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 244
           FGKV KD+FTMDY+YP+SAFQAFAICLSSFDTK+ACE
Sbjct: 409 FGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XSV4|TLP7_ORYSJ Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/300 (49%), Positives = 185/300 (61%), Gaps = 57/300 (19%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPP-NAEARVTKCRST 60
           + RR T TDYIIS++  ++S+ SS YIG+LRSNFLGTKF IYD  PP NA    ++ R++
Sbjct: 163 RSRRTTHTDYIISMDSKNISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNARTLCSQERTS 222

Query: 61  RQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQ-- 118
           R+ + ++VSPK+  G Y +  ++YELNVLG+RGPRRMQC M +IPAS++EPGG+ P Q  
Sbjct: 223 RRFSSRKVSPKVPTGCYPIVQVNYELNVLGTRGPRRMQCAMHSIPASAVEPGGIVPGQPK 282

Query: 119 ---------------TEF------HHSGLDSFPSIPFFRSKSIRAENFQND----QKEGL 153
                          T F       HS   S      F   +++ +  + D     KE  
Sbjct: 283 ELLPRLFEESFRSMATSFSKYSITDHSTDFSSSRFSEFGGGALQGQEQEQDGDDVNKERP 342

Query: 154 LVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAG--------------- 198
           LVLRNKAPRWHEQLQCWCLNF GRVTVASVKNFQL+A+     +G               
Sbjct: 343 LVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAPQPSSGAASEPSQAGQAAQQQ 402

Query: 199 --------------QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 244
                           H+ VILQFGKV KD+FTMDY+YP+SAFQAFAICL+SFDTK+ACE
Sbjct: 403 TQPSQPSSSSSSSSSNHDTVILQFGKVAKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 462

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FRH7|TLP10_ARATH Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 139/274 (50%), Positives = 181/274 (66%), Gaps = 41/274 (14%)

Query: 10  DYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPP---NAEARVTKCRSTRQVNMK 66
           +YIIS++ D++S+ S++Y+G+LRSNFLGTKF +YD  PP   ++ A +T   S  + + +
Sbjct: 174 EYIISMDADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSR 233

Query: 67  QVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE------ 120
           +VSPK+ +G+Y++A I+YELNVLG+RGPRRM C+M++IP SS+EPGG  P Q E      
Sbjct: 234 RVSPKVPSGSYNIAQITYELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAP 293

Query: 121 -----------------FHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRW 163
                            F H  LD   S   F    I  ++ + +     L+L+NK PRW
Sbjct: 294 YSLDDSFRSNISFSKSSFDHRSLDF--SSSRFSEMGISCDDNEEEASFRPLILKNKQPRW 351

Query: 164 HEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAG-------------QEHENVILQFGK 210
           HEQLQCWCLNF GRVTVASVKNFQLVA+ +    G              E + VILQFGK
Sbjct: 352 HEQLQCWCLNFRGRVTVASVKNFQLVAARQPQPQGTGAAAAPTSAPAHPEQDKVILQFGK 411

Query: 211 VGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 244
           VGKD+FTMDY+YP+SAFQAFAICLSSFDTK+ACE
Sbjct: 412 VGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
225436797	405	PREDICTED: tubby-like F-box protein 3-li	0.995	0.6	0.825	1e-118
302399093	401	TLP domain class transcription factor [M	0.987	0.600	0.805	1e-116
297828507	407	hypothetical protein ARALYDRAFT_322431 [	0.987	0.592	0.796	1e-114
356549056	389	PREDICTED: tubby-like F-box protein 6-li	0.995	0.624	0.777	1e-112
356555565	385	PREDICTED: tubby-like F-box protein 6-li	0.995	0.631	0.773	1e-111
118486104	392	unknown [Populus trichocarpa]	0.995	0.619	0.769	1e-111
224107205	395	f-box family protein [Populus trichocarp	0.995	0.615	0.776	1e-111
255551637	390	phosphoric diester hydrolase, putative [	0.995	0.623	0.769	1e-110
357447461	393	Tubby-like F-box protein [Medicago trunc	0.995	0.618	0.767	1e-110
388509992	402	unknown [Lotus japonicus]	0.995	0.604	0.769	1e-108

>gi|225436797|ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/247 (82%), Positives = 222/247 (89%), Gaps = 4/247 (1%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           KCRRPTCTDYIISLN DDVSKGS+TYIG+LRSNFLGTKFT+YD  PPNA AR++K RSTR
Sbjct: 159 KCRRPTCTDYIISLNADDVSKGSTTYIGKLRSNFLGTKFTVYDAQPPNAGARISKSRSTR 218

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
           ++  +QVSP++ AGNY VAHISYELNVLGSRGPRRMQCVMDAIPA++IEPGGVAPTQTEF
Sbjct: 219 RLGSRQVSPRVPAGNYPVAHISYELNVLGSRGPRRMQCVMDAIPANAIEPGGVAPTQTEF 278

Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQ----NDQKEGLLVLRNKAPRWHEQLQCWCLNFNGR 177
             S +DSFPS PFFRSKS R E+      +  K+ +LVL+NKAPRWHEQLQCWCLNFNGR
Sbjct: 279 VLSNVDSFPSFPFFRSKSNRTESLHSGPLSGPKDEMLVLKNKAPRWHEQLQCWCLNFNGR 338

Query: 178 VTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSF 237
           VTVASVKNFQLVAS ENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSF
Sbjct: 339 VTVASVKNFQLVASAENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSF 398

Query: 238 DTKIACE 244
           DTKIACE
Sbjct: 399 DTKIACE 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399093|gb|ADL36841.1| TLP domain class transcription factor [Malus x domestica]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/247 (80%), Positives = 222/247 (89%), Gaps = 6/247 (2%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           KCRRPTCTDYIISLN + VSKG+S ++G+LRSNFLGTKFTIYD  P N+ A+VTKCRSTR
Sbjct: 157 KCRRPTCTDYIISLNAEVVSKGNSAFVGKLRSNFLGTKFTIYDAQPTNSGAKVTKCRSTR 216

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
            VN  +VSP++ AGNY VAHI+YELNV+G+RGPRRMQCVMD+IPA ++EPGGVAPTQTEF
Sbjct: 217 LVN--KVSPRVPAGNYPVAHIAYELNVMGARGPRRMQCVMDSIPARAVEPGGVAPTQTEF 274

Query: 122 HHSGLDSFPSIPFFRSKSIRAENF----QNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGR 177
            HS  DSFPS+PFFRSKS R ENF    ++ + EG+LVLRNKAPRWHEQLQCWCLNFNGR
Sbjct: 275 MHSNTDSFPSVPFFRSKSTRTENFPSPLESGENEGMLVLRNKAPRWHEQLQCWCLNFNGR 334

Query: 178 VTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSF 237
           VTVASVKNFQLV+S ENGVAGQEHENVILQFGKVGKDVFTMDY+YPISAFQAFAICLSSF
Sbjct: 335 VTVASVKNFQLVSSPENGVAGQEHENVILQFGKVGKDVFTMDYRYPISAFQAFAICLSSF 394

Query: 238 DTKIACE 244
           DTKIACE
Sbjct: 395 DTKIACE 401

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828507|ref|XP_002882136.1| hypothetical protein ARALYDRAFT_322431 [Arabidopsis lyrata subsp. lyrata] gi|297327975|gb|EFH58395.1| hypothetical protein ARALYDRAFT_322431 [Arabidopsis lyrata subsp. lyrata]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/246 (79%), Positives = 218/246 (88%), Gaps = 5/246 (2%)

Query: 4   RRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQV 63
           RRPTCTDYIISLNCDDVS+GS+TYIG+LRSNFLGTKFT++D  P N   +VT+ RS+R +
Sbjct: 162 RRPTCTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVFDAQPTNPGTQVTRTRSSRLL 221

Query: 64  NMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHH 123
           ++KQVSP++ +GNY VAHISYELNVLGSRGPRRMQCVMDAIPAS++EPGG APTQTE  H
Sbjct: 222 SLKQVSPRIPSGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELIH 281

Query: 124 SGLDSFPSIPFFRSKSIRAENFQND-----QKEGLLVLRNKAPRWHEQLQCWCLNFNGRV 178
           S L++FPS  FFRSKSIRAE+  +      QKEGLLVL+NKAPRWHEQLQCWCLNFNGRV
Sbjct: 282 SNLENFPSFSFFRSKSIRAESLSSGPASAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRV 341

Query: 179 TVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 238
           TVASVKNFQLVA+ ENG AG EHENVILQFGKVGKDVFTMDYQYPISAFQAF ICLSSFD
Sbjct: 342 TVASVKNFQLVAAPENGPAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFD 401

Query: 239 TKIACE 244
           TKIACE
Sbjct: 402 TKIACE 407

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549056|ref|XP_003542914.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/247 (77%), Positives = 218/247 (88%), Gaps = 4/247 (1%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           KCRRPTCTDYIISL+ DD+SKGS++Y+G+LRSNFLGTKFTIYD   P+  A++ K RSTR
Sbjct: 143 KCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQLPHTGAKIMKSRSTR 202

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
            VN+KQVSPK+  GNY VAHISYELNVLGSRGPRRM CVMD+IPA++IEPGGVAPTQTEF
Sbjct: 203 LVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPATAIEPGGVAPTQTEF 262

Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQN----DQKEGLLVLRNKAPRWHEQLQCWCLNFNGR 177
             + +D FPS PFFRSKS RAEN  +    DQK+G+LVL+NKAPRWHEQLQCWCLNF+GR
Sbjct: 263 SLNNIDMFPSFPFFRSKSNRAENSMSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGR 322

Query: 178 VTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSF 237
           VT+ASVKNFQLVAS ENG AG EH+ +ILQFGKVGKD+FTMDY+YPISAFQAFAICLSSF
Sbjct: 323 VTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSF 382

Query: 238 DTKIACE 244
           DTKIACE
Sbjct: 383 DTKIACE 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555565|ref|XP_003546101.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/247 (77%), Positives = 218/247 (88%), Gaps = 4/247 (1%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           KCRRPTCTDYIISL+ DD+SKGS++Y+G+LRSNFLGTKFTIYDG PP+A A++ K RSTR
Sbjct: 139 KCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTR 198

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
            VN+KQVSPK+  GNY VAHISYELNVLGSRGPRRM CVMD+IPA++IEPGGVAP QTEF
Sbjct: 199 LVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPAAAIEPGGVAPVQTEF 258

Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQN----DQKEGLLVLRNKAPRWHEQLQCWCLNFNGR 177
             + +D FPS PFFRSKS R EN  +    DQK+G+LVL+NKAPRWHEQLQCWCLNF+GR
Sbjct: 259 SLNNIDMFPSFPFFRSKSNRVENSVSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGR 318

Query: 178 VTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSF 237
           VT+ASVKNFQLVAS EN  AG EH+ +ILQFGKVGKD+FTMDY++PISAFQAFAICLSSF
Sbjct: 319 VTIASVKNFQLVASAENRPAGPEHDKIILQFGKVGKDLFTMDYRFPISAFQAFAICLSSF 378

Query: 238 DTKIACE 244
           DTKIACE
Sbjct: 379 DTKIACE 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486104|gb|ABK94895.1| unknown [Populus trichocarpa]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/247 (76%), Positives = 218/247 (88%), Gaps = 4/247 (1%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           KCRRPTCTDYIISL+ DD+SKGS+ Y+G+LRSNFLGTKFT++DG PP+A A++TK RS+R
Sbjct: 146 KCRRPTCTDYIISLDTDDMSKGSNAYVGKLRSNFLGTKFTVFDGQPPHAGAKMTKSRSSR 205

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
            VN+KQVSP++  GNY VA ISYELNVLGSRGPRRM C+MDAIPAS+IEPGG+APTQTEF
Sbjct: 206 LVNLKQVSPRVPTGNYPVASISYELNVLGSRGPRRMHCIMDAIPASAIEPGGIAPTQTEF 265

Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQ----NDQKEGLLVLRNKAPRWHEQLQCWCLNFNGR 177
            H  +D  PS+PFFRSKS R E+FQ    + Q+E  LVL+NKAPRWHEQLQCWCLNF+GR
Sbjct: 266 SHHNVDFLPSLPFFRSKSSRVESFQSGSLSSQRERALVLKNKAPRWHEQLQCWCLNFHGR 325

Query: 178 VTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSF 237
           VTVASVKNFQLV S ENG AG EHEN+ILQFGKVGKD+FTMDY+YPISAFQAFA+CLSSF
Sbjct: 326 VTVASVKNFQLVVSPENGPAGPEHENIILQFGKVGKDLFTMDYRYPISAFQAFALCLSSF 385

Query: 238 DTKIACE 244
           DTKIACE
Sbjct: 386 DTKIACE 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107205|ref|XP_002314408.1| f-box family protein [Populus trichocarpa] gi|222863448|gb|EEF00579.1| f-box family protein [Populus trichocarpa]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/250 (77%), Positives = 220/250 (88%), Gaps = 7/250 (2%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           KCRRPTCTDYIISL+ DD+SKGS+TY G+LRSNFLGTKFT++DG PP+A A++TK  S+R
Sbjct: 146 KCRRPTCTDYIISLDTDDMSKGSNTYAGKLRSNFLGTKFTVFDGQPPHAGAKMTKSYSSR 205

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
            VN+KQVSP++  GNY VA+ISYELNVLGSRGPRRM C+MDAIPA++IEPGGVAPTQTEF
Sbjct: 206 LVNLKQVSPRVPTGNYPVANISYELNVLGSRGPRRMHCIMDAIPAAAIEPGGVAPTQTEF 265

Query: 122 HHSGLDSFPSIPFFRSKS---IRAENFQ----NDQKEGLLVLRNKAPRWHEQLQCWCLNF 174
           +H   D FPS+ FFRSKS    R E+FQ    + Q+EG LVLRNKAPRWHEQLQCWCLNF
Sbjct: 266 YHHSADFFPSLLFFRSKSNRVERVESFQSGPLSSQREGALVLRNKAPRWHEQLQCWCLNF 325

Query: 175 NGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICL 234
           +GRVTVASVKNFQLVAS ENG AG EHEN+ILQFGKVGKD+FTMDY+YPISAFQAFAICL
Sbjct: 326 HGRVTVASVKNFQLVASQENGPAGPEHENIILQFGKVGKDLFTMDYRYPISAFQAFAICL 385

Query: 235 SSFDTKIACE 244
           SSFDTKIACE
Sbjct: 386 SSFDTKIACE 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551637|ref|XP_002516864.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223543952|gb|EEF45478.1| phosphoric diester hydrolase, putative [Ricinus communis]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/247 (76%), Positives = 216/247 (87%), Gaps = 4/247 (1%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           KCRR TCTDYIISL+ DD+SKGSSTY+G+LRSNFLGTKFT++DG PP+A A++ K RSTR
Sbjct: 144 KCRRTTCTDYIISLDADDMSKGSSTYVGKLRSNFLGTKFTVFDGQPPHAGAKMMKSRSTR 203

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
            VN+KQVSP++ AGNY +AH+SYELNVLGSRGPRRMQCVMDAIPA+SI PGG APTQTEF
Sbjct: 204 LVNLKQVSPRVPAGNYPIAHMSYELNVLGSRGPRRMQCVMDAIPATSIGPGGTAPTQTEF 263

Query: 122 HHSGLDSFPSIPFFRSKSIRAENF----QNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGR 177
            H  +D  PS+PFFRSKS   ENF     + QK+G L+L+NK+PRWHEQLQCWCLNF+GR
Sbjct: 264 AHHSVDILPSLPFFRSKSNCVENFLSGPLSSQKDGALILKNKSPRWHEQLQCWCLNFHGR 323

Query: 178 VTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSF 237
           VTVASVKNFQLVAS ENG  G EHE +ILQFGKVGKD+FTMDY+YPISAFQAFAICLSSF
Sbjct: 324 VTVASVKNFQLVASPENGPPGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSF 383

Query: 238 DTKIACE 244
           DTKIACE
Sbjct: 384 DTKIACE 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447461|ref|XP_003594006.1| Tubby-like F-box protein [Medicago truncatula] gi|355483054|gb|AES64257.1| Tubby-like F-box protein [Medicago truncatula]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/249 (76%), Positives = 217/249 (87%), Gaps = 6/249 (2%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           KCRRPTCTDYIISL+ DD+S+GS+ Y+G+LRSNFLGTKFTIYDG PP+A A+ TK RSTR
Sbjct: 145 KCRRPTCTDYIISLDADDMSRGSNNYVGKLRSNFLGTKFTIYDGQPPHAGAKFTKSRSTR 204

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
            VN+KQVSPK+  GNY VAHISYELNVLGSRGPRRM CVMD+IP+SSIEPGGVAPTQTEF
Sbjct: 205 LVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPSSSIEPGGVAPTQTEF 264

Query: 122 HHSGLDSFPSIPFFRSKSIR-AEN-----FQNDQKEGLLVLRNKAPRWHEQLQCWCLNFN 175
             + ++ FP  PFFRSKS R  EN        D+K+G+LVL+NKAPRWHEQLQCWCLNF+
Sbjct: 265 SLNNIEMFPLFPFFRSKSNRVVENSLSGPLVGDKKDGMLVLKNKAPRWHEQLQCWCLNFH 324

Query: 176 GRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLS 235
           GRVT+ASVKNFQLVAS ENG AG EH+ +ILQFGKVGKD+FTMD++YPISAFQAFAICLS
Sbjct: 325 GRVTIASVKNFQLVASAENGTAGPEHDKIILQFGKVGKDLFTMDFRYPISAFQAFAICLS 384

Query: 236 SFDTKIACE 244
           SFDTKIACE
Sbjct: 385 SFDTKIACE 393

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509992|gb|AFK43062.1| unknown [Lotus japonicus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/247 (76%), Positives = 213/247 (86%), Gaps = 4/247 (1%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           KCR  T TDYIISLN DDVS+GSSTYIG+LRSNFLGTKFT+YD HPP   A+VTK RSTR
Sbjct: 156 KCRHATHTDYIISLNHDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGAKVTKSRSTR 215

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
            V++KQVSP++ AGN  + H+SY+LNVLGSRGPR MQCVMDAIPAS++EPGG APTQT+F
Sbjct: 216 LVSLKQVSPRVPAGNLPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGSAPTQTQF 275

Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQND----QKEGLLVLRNKAPRWHEQLQCWCLNFNGR 177
            HS +D+ PSIPFFRSKS R EN  +     Q EG+LVL+NK+PRWHEQLQCWCLNFNGR
Sbjct: 276 LHSRIDASPSIPFFRSKSTRMENLPSVPSTCQNEGMLVLKNKSPRWHEQLQCWCLNFNGR 335

Query: 178 VTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSF 237
           VTVASVKNFQLVAS  NGV+ Q  ENV+LQFGKVGKDVFTMDYQYPISAF+AFAICLSSF
Sbjct: 336 VTVASVKNFQLVASPRNGVSEQAQENVVLQFGKVGKDVFTMDYQYPISAFEAFAICLSSF 395

Query: 238 DTKIACE 244
           DTKIACE
Sbjct: 396 DTKIACE 402

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2081101	380	TLP9 "AT3G06380" [Arabidopsis	0.959	0.615	0.612	2.5e-72
TAIR|locus:2180034	389	TLP11 "AT5G18680" [Arabidopsis	0.971	0.609	0.596	6.1e-71
TAIR|locus:2032950	445	TLP10 "AT1G25280" [Arabidopsis	0.516	0.283	0.574	1.8e-70
TAIR|locus:2025327	455	TLP1 "AT1G76900" [Arabidopsis	0.598	0.320	0.496	1.2e-68
TAIR|locus:2194686	429	TLP5 "AT1G43640" [Arabidopsis	0.778	0.442	0.497	2.3e-66
TAIR|locus:2062121	394	TLP2 "AT2G18280" [Arabidopsis	0.950	0.588	0.557	7.4e-66
TAIR|locus:2036730	413	TLP6 "AT1G47270" [Arabidopsis	0.946	0.559	0.536	8.8e-63
TAIR|locus:2009610	379	TLP7 "AT1G53320" [Arabidopsis	0.905	0.583	0.521	7.3e-59
UNIPROTKB|E1B8A6	508	TUB "Uncharacterized protein"	0.381	0.183	0.52	5e-38
RGD|3918	505	Tub "tubby homolog (mouse)" [R	0.381	0.184	0.52	1e-37

TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 153/250 (61%), Positives = 185/250 (74%)

Query:     2 KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
             K +R TCTDYIISL  DD+SK S+ Y+GR+RSNFLGTKFT++DG    A A++ K RS+ 
Sbjct:   140 KLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGTKFTVFDGSQTGA-AKMQKSRSS- 197

Query:    62 QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
               N  +VSP++  G+Y +AHISYELNVLGSRGPRRM+C+MD IP S +E  GV  + +  
Sbjct:   198 --NFIKVSPRVPQGSYPIAHISYELNVLGSRGPRRMRCIMDTIPMSIVESRGVVASTSIS 255

Query:   122 HHSGLDSFPSIPFFRS--KSIRAENFQ-NDQKEGL----LVLRNKAPRWHEQLQCWCLNF 174
               S   S    P FRS  K +R+ +   +D    L    LVL NKAPRWHEQL+CWCLNF
Sbjct:   256 SFSSRSS----PVFRSHSKPLRSNSASCSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNF 311

Query:   175 NGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICL 234
             +GRVTVASVKNFQLVA + +  AGQ  E +ILQFGKVGKD+FTMDY YPISAFQAFAICL
Sbjct:   312 HGRVTVASVKNFQLVA-VSDCEAGQTSERIILQFGKVGKDMFTMDYGYPISAFQAFAICL 370

Query:   235 SSFDTKIACE 244
             SSF+T+IACE
Sbjct:   371 SSFETRIACE 380

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 149/250 (59%), Positives = 185/250 (74%)

Query:     2 KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHP-PNAEARVTKCRST 60
             K +  TCTDYIISL  DD+S+ S  Y+G++RSNFLGTKFT++DG+  P+  A   K R +
Sbjct:   146 KLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNFLGTKFTVFDGNLLPSTGA--AKLRKS 203

Query:    61 RQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE 120
             R  N  +VS K+  G+Y VAHI+YELNVLGSRGPR+MQC+MD IP S++EP GVA   +E
Sbjct:   204 RSYNPAKVSAKVPLGSYPVAHITYELNVLGSRGPRKMQCLMDTIPTSTMEPQGVASEPSE 263

Query:   121 FHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTV 180
             F   G  S  ++   +SK +R+ +  +  KE  LVL NK PRWHEQL+CWCLNF+GRVTV
Sbjct:   264 FPLLGTRS--TLSRSQSKPLRSSS--SHLKETPLVLSNKTPRWHEQLRCWCLNFHGRVTV 319

Query:   181 ASVKNFQLVA---SLENGVA---GQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICL 234
             ASVKNFQLVA   S  +G      ++ E +ILQFGKVGKD+FTMDY YPISAFQAFAICL
Sbjct:   320 ASVKNFQLVAAGASCGSGTGMSPERQSERIILQFGKVGKDMFTMDYGYPISAFQAFAICL 379

Query:   235 SSFDTKIACE 244
             SSF+T+IACE
Sbjct:   380 SSFETRIACE 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
 Identities = 81/141 (57%), Positives = 97/141 (68%)

Query:   117 TQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNG 176
             +++ F H  LD F S  F     I  ++ + +     L+L+NK PRWHEQLQCWCLNF G
Sbjct:   307 SKSSFDHRSLD-FSSSRF-SEMGISCDDNEEEASFRPLILKNKQPRWHEQLQCWCLNFRG 364

Query:   177 RVTVASVKNFQLVASLE-----NGVAGQ--------EHENVILQFGKVGKDVFTMDYQYP 223
             RVTVASVKNFQLVA+ +      G A          E + VILQFGKVGKD+FTMDY+YP
Sbjct:   365 RVTVASVKNFQLVAARQPQPQGTGAAAAPTSAPAHPEQDKVILQFGKVGKDMFTMDYRYP 424

Query:   224 ISAFQAFAICLSSFDTKIACE 244
             +SAFQAFAICLSSFDTK+ACE
Sbjct:   425 LSAFQAFAICLSSFDTKLACE 445

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 1.2e-68, Sum P(3) = 1.2e-68
 Identities = 76/153 (49%), Positives = 103/153 (67%)

Query:     2 KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPP-NAE-AR-VTKCR 58
             + RR T T+Y+IS++ D +S+ S+TYIG++RSNFLGTKF IYD  P  N+  AR V    
Sbjct:   164 RIRRTTYTEYVISMHADTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNSNIARAVQPVG 223

Query:    59 STRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQ 118
              +R+   K+VSPK+ +G+Y +A +SYELNVLG+RGPRRM C M++IPASS+  GG  P Q
Sbjct:   224 LSRRFYSKRVSPKVPSGSYKIAQVSYELNVLGTRGPRRMHCAMNSIPASSLAEGGTVPGQ 283

Query:   119 TEF--HHSGLD-SFPSIPFFRSKSIRAENFQND 148
              +     S LD SF SI    S+ I  + + ND
Sbjct:   284 PDIIVPRSILDESFRSITSSSSRKITYD-YSND 315

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
 Identities = 97/195 (49%), Positives = 140/195 (71%)

Query:     2 KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPP-NAEARVTKCRST 60
             + RR T T+Y+IS++ D++S+ SSTYIG+L+SNFLGTKF +YD  P  N+   ++    +
Sbjct:   162 RSRRATYTEYVISMDADNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYNSSQILSPPNRS 221

Query:    61 RQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTE 120
             R  N K+VSPK+ +G+Y++A ++YELN+LG+RGPRRM C+M +IP+ ++EPGG  P+Q E
Sbjct:   222 RSFNSKKVSPKVPSGSYNIAQVTYELNLLGTRGPRRMNCIMHSIPSLALEPGGTVPSQPE 281

Query:   121 FHHSGLD-SFPSIPFFRSKSIRAENFQNDQKEGL---LVLRNKAPRWHEQLQCWCLNFNG 176
             F    LD SF SI   +  +   +  +  ++EG    LVL+ K PRW + L+CWCLNF G
Sbjct:   282 FLQRSLDESFRSIGSSKIVNHSGDFTRPKEEEGKVRPLVLKTKPPRWLQPLRCWCLNFKG 341

Query:   177 RVTVASVKNFQLVAS 191
             RVTVASVKNFQL+++
Sbjct:   342 RVTVASVKNFQLMSA 356

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 140/251 (55%), Positives = 178/251 (70%)

Query:     2 KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
             + RR TCTD+IISL+  + S+ SSTY+G+LRS FLGTKFTIYD    ++ A+    +  R
Sbjct:   154 RIRRATCTDFIISLSAKNFSRSSSTYVGKLRSGFLGTKFTIYDNQTASSTAQA---QPNR 210

Query:    62 QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSI--EPGGVAPTQT 119
             +++ KQ +PKL   +  V +I+YELNVL +RGPRRM C MD+IP SS+  EP  V   + 
Sbjct:   211 RLHPKQAAPKLPTNSSTVGNITYELNVLRTRGPRRMHCAMDSIPLSSVIAEPSVVQGIEE 270

Query:   120 EFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGL----LVLRNKAPRWHEQLQCWCLNFN 175
             E     + S PS P  + ++I  +    D    L    LVL+NK+PRWHEQLQCWCLNF 
Sbjct:   271 E-----VSSSPS-P--KGETITTDKEIPDNSPSLRDQPLVLKNKSPRWHEQLQCWCLNFK 322

Query:   176 GRVTVASVKNFQLVASLENGVAG--QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAIC 233
             GRVTVASVKNFQLVA ++  +    +EHE VILQFGK+GKD+FTMDY+YP+SAFQAFAIC
Sbjct:   323 GRVTVASVKNFQLVAEIDASLDAPPEEHERVILQFGKIGKDIFTMDYRYPLSAFQAFAIC 382

Query:   234 LSSFDTKIACE 244
             +SSFDTK ACE
Sbjct:   383 ISSFDTKPACE 393

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 134/250 (53%), Positives = 175/250 (70%)

Query:     2 KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
             + RR T  ++++SL+ +D S+ SS YIG+LRSNFLGTKFT+Y+  PP    ++       
Sbjct:   176 RVRRATGAEFVVSLSGNDFSRSSSNYIGKLRSNFLGTKFTVYENQPPPFNRKLPP----- 230

Query:    62 QVNMKQVSPKLLAGN--YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQT 119
               +M QVSP + + +  Y++A I YELNVL +RGPRRMQC+M +IP S+I+ GG   + T
Sbjct:   231 --SM-QVSPWVSSSSSSYNIASILYELNVLRTRGPRRMQCIMHSIPISAIQEGGKIQSPT 287

Query:   120 EFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVT 179
             EF + G      +  F S ++  E+   +     L+L+NK+PRWHEQLQCWCLNF GRVT
Sbjct:   288 EFTNQGKKKKKPLMDFCSGNLGGESVIKEP----LILKNKSPRWHEQLQCWCLNFKGRVT 343

Query:   180 VASVKNFQLVASL-ENG----VAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICL 234
             VASVKNFQLVA+  E G    +  +E + VILQFGK+GKD+FTMDY+YPISAFQAFAICL
Sbjct:   344 VASVKNFQLVAAAAEAGKNMNIPEEEQDRVILQFGKIGKDIFTMDYRYPISAFQAFAICL 403

Query:   235 SSFDTKIACE 244
             SSFDTK  CE
Sbjct:   404 SSFDTKPVCE 413

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 124/238 (52%), Positives = 168/238 (70%)

Query:     9 TDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQV 68
             T+YIISL+ DD S+GS+ Y+G+LRS+FLGT FT+YD  PP+  A+ +  +++R+   KQ+
Sbjct:   157 TEYIISLDADDFSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGAKPSNGKASRRFASKQI 216

Query:    69 SPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDS 128
             SP++ AGN+ V H+SY+ N+L SRGPRRM   +   P+ S       P+ +    +GL S
Sbjct:   217 SPQVPAGNFEVGHVSYKFNLLKSRGPRRMVSTLRC-PSPS-------PSSSS---AGLSS 265

Query:   129 FPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQL 188
                 P   +K ++  N        L +L+NKAPRWHE LQCWCLNF+GRVTVASVKNFQL
Sbjct:   266 DQK-PCDVTKIMKKPNKDGSS---LTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQL 321

Query:   189 VASLENGV-AGQ-EHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 244
             VA+++    +G+ + E V+LQFGKVG D FTMDY+ P+SAFQAFAICL+SF TK+ACE
Sbjct:   322 VATVDQSQPSGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

UNIPROTKB|E1B8A6 TUB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 275 (101.9 bits), Expect = 5.0e-38, Sum P(2) = 5.0e-38
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query:   145 FQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENV 204
             +QN   E ++ L+NK P W++  Q + LNF+GRVT ASVKNFQ++        G + + +
Sbjct:   416 WQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-------GNDPDYI 468

Query:   205 ILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 244
             ++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct:   469 VMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 508

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0050766 "positive regulation of phagocytosis" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

RGD|3918 Tub "tubby homolog (mouse)" [Rattus norvegicus (taxid:10116)]

 Score = 275 (101.9 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query:   145 FQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENV 204
             +QN   E ++ L+NK P W++  Q + LNF+GRVT ASVKNFQ++        G + + +
Sbjct:   413 WQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-------GNDPDYI 465

Query:   205 ILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 244
             ++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct:   466 VMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007602 "phototransduction" evidence=IEA;ISO

GO:0007605 "sensory perception of sound" evidence=IEA;ISO

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA;ISO

GO:0009584 "detection of visible light" evidence=ISO

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA;ISO

GO:0050766 "positive regulation of phagocytosis" evidence=ISO;ISS

GO:0060041 "retina development in camera-type eye" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY21	TLP3_ARATH	No assigned EC number	0.8089	0.9877	0.5935	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_4002488 annotation not avaliable (407 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
pfam01167	243	pfam01167, Tub, Tub family	7e-99

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score =  287 bits (737), Expect = 7e-99
 Identities = 109/237 (45%), Positives = 143/237 (60%), Gaps = 39/237 (16%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           K +R   ++Y+ISL+  D+S+    YIG+LRSNFLGTKFT++D      +AR+       
Sbjct: 46  KRKRSKTSNYLISLDPTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL------- 98

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
                 V+PK+ +G   +A + YE NVLG RGPR+M  +M  IP+S        P Q   
Sbjct: 99  ------VTPKVASGRQELAAVCYETNVLGFRGPRKMTVIMPGIPSSHE----RVPIQPLN 148

Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA 181
               L S                +QN  KE LLVL NKAPRW++QLQ + LNF+GRVT A
Sbjct: 149 DQESLLS---------------RWQNKNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQA 193

Query: 182 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 238
           SVKNFQ+       V   + + ++LQFG+V KD+FTMDY+YP+SAFQAFAICLSSFD
Sbjct: 194 SVKNFQI-------VHASDPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG2502	355	consensus Tub family proteins [General function pr	100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	100.0
KOG2503	565	consensus Tubby superfamily protein TULP4 [General	99.82
PF12043	346	DUF3527: Domain of unknown function (DUF3527); Int	97.36

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=100.00  E-value=8e-85  Score=600.47  Aligned_cols=204  Identities=61%  Similarity=1.024  Sum_probs=181.4

Q ss_pred             CcccCCCCccEEEEecCCCCCCCCcceeeeeecceeecEEEEecCCCCCCccccccccccccccccccCccccCcceeEE
Q 026057            1 MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVA   80 (244)
Q Consensus         1 ~k~rr~~~SnYiIS~~~~d~sr~s~~yvGKLRSNflGTkF~iyD~g~~~~~a~~~~~~~~r~~~~~q~sp~~~~~~~ela   80 (244)
                      +|+||+||+|||||++++||||++++|||||||||+||||||||+|.++..          .++      ++|.+++|||
T Consensus       152 rk~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~~r----------~~~------~~~~~~~~la  215 (355)
T KOG2502|consen  152 RKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNPSR----------RFN------KVPSGRQELA  215 (355)
T ss_pred             eeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCccc----------ccc------cCCcccceee
Confidence            589999999999999999999999999999999999999999999865532          111      4678999999


Q ss_pred             EEEEeecccCCCCCceeEEeeccCCCcccCCCCCCCCcccccCCCCCCCCCccccccccccccccccccccceEEEeeCC
Q 026057           81 HISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKA  160 (244)
Q Consensus        81 ~I~Ye~nvlg~rGPRkM~v~i~~ip~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~l~nk~  160 (244)
                      +|+||+||||+||||||+|+||.||.++  ++|..|.|++..+..     .+  +++.        +...+++++|+||+
T Consensus       216 ~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~-----~l--~r~~--------~k~~e~~lvL~NK~  278 (355)
T KOG2502|consen  216 AVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS-----LL--FRSQ--------NKDKEGLLVLKNKT  278 (355)
T ss_pred             EEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc-----hh--hhcc--------ccCcccceEeecCC
Confidence            9999999999999999999999999887  788888877654421     11  1211        22368999999999


Q ss_pred             CccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHHHHHHhCccc
Q 026057          161 PRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTK  240 (244)
Q Consensus       161 P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFai~Lssfd~K  240 (244)
                      |+||+++||||||||||||+||||||||||..       ++++|||||||||+|+|||||+||||+||||||||||||+|
T Consensus       279 P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtK  351 (355)
T KOG2502|consen  279 PRWNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTK  351 (355)
T ss_pred             CccccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999985       57999999999999999999999999999999999999999


Q ss_pred             cccC
Q 026057          241 IACE  244 (244)
Q Consensus       241 ~aCe  244 (244)
                      ||||
T Consensus       352 laCe  355 (355)
T KOG2502|consen  352 LACE  355 (355)
T ss_pred             ccCC
Confidence            9998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=100.00  E-value=3.5e-72  Score=501.83  Aligned_cols=204  Identities=55%  Similarity=0.905  Sum_probs=152.8

Q ss_pred             CcccCCCCccEEEEecCCCCCCCCcceeeeeecceeecEEEEecCCCCCCccccccccccccccccccCccccCcceeEE
Q 026057            1 MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVA   80 (244)
Q Consensus         1 ~k~rr~~~SnYiIS~~~~d~sr~s~~yvGKLRSNflGTkF~iyD~g~~~~~a~~~~~~~~r~~~~~q~sp~~~~~~~ela   80 (244)
                      +|+||+++||||||++++|+||++++|||||||||+||+|+|||+|.+++.+.             ..+|+.+..|+|||
T Consensus        43 rK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa  109 (246)
T PF01167_consen   43 RKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGTEFTIYDNGPNPKKSK-------------SISPREPQIRRELA  109 (246)
T ss_dssp             EEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSSEEEEEESSB-CCCST-------------CCTSCCSSB--EEE
T ss_pred             eecccCCCcceEEecCCCccccCCCceeeeeccccceeEEEEECCCCCCcccc-------------ccCcCcCcCcceEE
Confidence            47899999999999999999999999999999999999999999998776432             12455677899999


Q ss_pred             EEEEeecccCCCCCceeEEeeccCCCcccCCCCCCCCcccccCCCCCCCCCccccccccccccccccccccceEEEeeCC
Q 026057           81 HISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKA  160 (244)
Q Consensus        81 ~I~Ye~nvlg~rGPRkM~v~i~~ip~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~l~nk~  160 (244)
                      +|+|++||||++|||||+|+||+|+....++++..|.++   . ..+..+.+..          ......+++++|+||+
T Consensus       110 ~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~p---~-~~~~~~~~~~----------~~~~~~~~~~~l~~k~  175 (246)
T PF01167_consen  110 AVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQP---L-NQEKDSLLSR----------FQNKKKDELIVLKNKP  175 (246)
T ss_dssp             EEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B--------S-S-CCCSHHHH----------HHCT-TTSEEEEEE--
T ss_pred             EEEEEeccccccCCcEEEEEecCCCccccccceeeeeec---c-cccccccccc----------ccccCCcceEEEecCC
Confidence            999999999999999999999999877665554443321   1 1011111110          1123467999999999


Q ss_pred             CccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHHHHHHhCc
Q 026057          161 PRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD  238 (244)
Q Consensus       161 P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFai~Lssfd  238 (244)
                      |+||+++++|+|||+|||++|||||||||+++       +++++||||||+++|.|+|||+|||||+|||||||||||
T Consensus       176 P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~-------~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd  246 (246)
T PF01167_consen  176 PRWNEELQSYVLNFNGRVTVASVKNFQLVHPS-------DPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD  246 (246)
T ss_dssp             -EEETTTTEEEEEETTSECC-BTTEEEEEBTT-------BTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred             CcEeccCCeEEeccCCeEeccccceeEEEccC-------CCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence            99999999999999999999999999999985       578999999999999999999999999999999999998

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]

Probab=99.82  E-value=4.2e-21  Score=184.06  Aligned_cols=77  Identities=43%  Similarity=0.742  Sum_probs=72.1

Q ss_pred             ceEEEeeCCCccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHH
Q 026057          152 GLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFA  231 (244)
Q Consensus       152 ~~~~l~nk~P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFa  231 (244)
                      .+.++.||+|-|||.+|-|+|||.||||+.|.||||+-..          .+.|||||+|+-+.|++||+||+|+.||||
T Consensus       485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa  554 (565)
T KOG2503|consen  485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA  554 (565)
T ss_pred             eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence            5569999999999999999999999999999999999764          578999999999999999999999999999


Q ss_pred             HHHHhCc
Q 026057          232 ICLSSFD  238 (244)
Q Consensus       232 i~Lssfd  238 (244)
                      +||++.-
T Consensus       555 valanvt  561 (565)
T KOG2503|consen  555 VALANVT  561 (565)
T ss_pred             HHHhhhh
Confidence            9999754

>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised

Probab=97.36  E-value=0.00025  Score=67.13  Aligned_cols=58  Identities=19%  Similarity=0.454  Sum_probs=47.6

Q ss_pred             CcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHHHHHHhCcc
Q 026057          176 GRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT  239 (244)
Q Consensus       176 GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFai~Lssfd~  239 (244)
                      .+...+.-+=|.|....      ..++..+|-+--+.++.|.+||+-.||+||||+||+|-.++
T Consensus       287 ~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~  344 (346)
T PF12043_consen  287 SSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS  344 (346)
T ss_pred             cccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence            45555677778888763      23445999999999999999999999999999999997764

This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
1s31_A	273	Crystal Structure Analysis Of The Human Tub Protein		2e-42
1c8z_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Leng		7e-42
1i7e_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Boun		2e-41
2fim_A	276	Structure Of The C-Terminal Domain Of Human Tubby-L		4e-39
3c5n_A	246	Structure Of Human Tulp1 In Complex With Ip3 Length		3e-36

>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 139/245 (56%), Gaps = 43/245 (17%)
Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRS 59
           K ++   ++Y+IS++  D+S+G  +YIG+LRSN +GTKFT+YD   +P  A +   +  +
Sbjct: 70  KRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT 129
Query: 60  TRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQT 119
            RQ                +A + YE NVLG +GPR+M  +   +P  ++    V+    
Sbjct: 130 LRQ---------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRPR 171
Query: 120 EFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVT 179
             H + L                  +QN   E ++ L+NK P W++  Q + LNF+GRVT
Sbjct: 172 NEHETLL----------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVT 215
Query: 180 VASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT 239
            ASVKNFQ++        G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+
Sbjct: 216 QASVKNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDS 268
Query: 240 KIACE 244
           K+ACE
Sbjct: 269 KLACE 273

>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265

Iteration: 1
 Score =  167 bits (422), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 138/245 (56%), Gaps = 43/245 (17%)
Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRS 59
           K ++   ++Y+IS++  D+S+G  +YIG+LRSN +GTKFT+YD   +P  A +   +  +
Sbjct: 62  KRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT 121
Query: 60  TRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQT 119
            RQ                +A + YE NVLG +GPR+M  +   +P  ++    V     
Sbjct: 122 LRQ---------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRPR 163
Query: 120 EFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVT 179
             H + L                  +QN   E ++ L+NK P W++  Q + LNF+GRVT
Sbjct: 164 NEHETLL----------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVT 207
Query: 180 VASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT 239
            ASVKNFQ++        G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+
Sbjct: 208 QASVKNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDS 260
Query: 240 KIACE 244
           K+ACE
Sbjct: 261 KLACE 265

>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265

Iteration: 1
 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 138/245 (56%), Gaps = 43/245 (17%)
Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRS 59
           K ++   ++Y+IS++  D+S+G  +YIG+LRSN +GTKFT+YD   +P  A +   +  +
Sbjct: 62  KRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT 121
Query: 60  TRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQT 119
            RQ                +A + YE NVLG +GPR+M  +   +P  ++    V     
Sbjct: 122 LRQ---------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRPR 163
Query: 120 EFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVT 179
             H + L                  +QN   E ++ L+NK P W++  + + LNF+GRVT
Sbjct: 164 NEHETLL----------------ARWQNKNTESIIELQNKTPVWNDDTESYVLNFHGRVT 207
Query: 180 VASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT 239
            ASVKNFQ++        G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+
Sbjct: 208 QASVKNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDS 260
Query: 240 KIACE 244
           K+ACE
Sbjct: 261 KLACE 265

>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276

Iteration: 1
 Score =  157 bits (398), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/243 (38%), Positives = 128/243 (52%), Gaps = 41/243 (16%)
Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           K +R    +Y+IS++  ++S+G   +IG+LRSN LG +FT++D          T   S R
Sbjct: 75  KRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLR 134
Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
           Q                +A + YE NVLG RGPRRM  +   IP  S E   V P +   
Sbjct: 135 Q---------------ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV-PIRPRN 175
Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA 181
              GL                  +QN   E L+ L NK P W++    + LNF GRVT A
Sbjct: 176 ASDGL---------------LVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 220
Query: 182 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKI 241
           SVKNFQ+V +        + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD K+
Sbjct: 221 SVKNFQIVHA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKL 273
Query: 242 ACE 244
           ACE
Sbjct: 274 ACE 276

>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 123/237 (51%), Gaps = 41/237 (17%)
Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           K +R    +Y+IS++  ++S+G   +IG+LRSN LG +FT++D          T   S R
Sbjct: 51  KRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLR 110
Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
           Q                +A + YE NVLG RGPRRM  +   IP  S E   V P +   
Sbjct: 111 Q---------------ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV-PIRPRN 151
Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA 181
              GL                  +QN   E L+ L NK P W++    + LNF GRVT A
Sbjct: 152 ASDGL---------------LVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 196
Query: 182 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 238
           SVKNFQ+V +        + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD
Sbjct: 197 SVKNFQIVHA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	2e-75
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	3e-72
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score =  229 bits (584), Expect = 2e-75
 Identities = 88/243 (36%), Positives = 125/243 (51%), Gaps = 41/243 (16%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           K +R    +Y+IS++  ++S+G   +IG+LRSN LG +FT++D                 
Sbjct: 75  KRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNP------------ 122

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
               +  S  + +    +A + YE NVLG RGPRRM  ++   P  S E   V       
Sbjct: 123 ---QRGYSTNVASLRQELAAVIYETNVLGFRGPRRMTVII---PGMSAENERVPIRPRNA 176

Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA 181
               L                  +QN   E L+ L NK P W++    + LNF GRVT A
Sbjct: 177 SDGLL----------------VRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 220

Query: 182 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKI 241
           SVKNFQ+V +        + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD K+
Sbjct: 221 SVKNFQIVHA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKL 273

Query: 242 ACE 244
           ACE
Sbjct: 274 ACE 276

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score =  220 bits (560), Expect = 3e-72
 Identities = 84/237 (35%), Positives = 120/237 (50%), Gaps = 41/237 (17%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           K +R    +Y+IS++  ++S+G   +IG+LRSN LG +FT++D                 
Sbjct: 51  KRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNP------------ 98

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
               +  S  + +    +A + YE NVLG RGPRRM  ++   P  S E   V       
Sbjct: 99  ---QRGYSTNVASLRQELAAVIYETNVLGFRGPRRMTVII---PGMSAENERVPIRPRNA 152

Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA 181
               L                  +QN   E L+ L NK P W++    + LNF GRVT A
Sbjct: 153 SDGLL----------------VRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 196

Query: 182 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 238
           SVKNFQ+V +        + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD
Sbjct: 197 SVKNFQIVHA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 46/286 (16%), Positives = 72/286 (25%), Gaps = 96/286 (33%)

Query: 9   TDYIISLNCDDVSKGSSTY----IGRLRSN--FLGTKFTIYDGHPPNAEARVTKCRSTRQ 62
           T  +         K            LR N  FL +        P        + R  R 
Sbjct: 64  TLRLFWTLLS---KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RL 119

Query: 63  VNMKQVSPKLLAGNYHVAHIS---------YEL----NVL--GSRGPRRMQC-----VMD 102
            N  QV  K     Y+V+ +           EL    NVL  G  G            +D
Sbjct: 120 YNDNQVFAK-----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-----SGKTWVALD 169

Query: 103 AIPASSIE---PGGV---------------APTQTEFHH------SGLDSFPSIPFFRSK 138
              +  ++      +                  Q   +       S  D   +I   R  
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIH 228

Query: 139 SIRAE--NFQNDQ--KEGLLVLRNKAPRWHEQLQCWCLN-FNGRVTVASVKNFQLV---- 189
           SI+AE       +  +  LLVL N     +        N FN    +       L+    
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNV---QNA----KAWNAFNLSCKI-------LLTTRF 274

Query: 190 ASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLS 235
             + + ++     ++ L    +     T D              L 
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMT---LTPDE-----VKSLLLKYLD 312

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	100.0
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	100.0

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=100.00  E-value=2e-76  Score=535.54  Aligned_cols=203  Identities=41%  Similarity=0.749  Sum_probs=150.1

Q ss_pred             CcccCCCCccEEEEecCCCCCCCCcceeeeeecceeecEEEEecCCCCCCccccccccccccccccccCccccCcceeEE
Q 026057            1 MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVA   80 (244)
Q Consensus         1 ~k~rr~~~SnYiIS~~~~d~sr~s~~yvGKLRSNflGTkF~iyD~g~~~~~a~~~~~~~~r~~~~~q~sp~~~~~~~ela   80 (244)
                      +|+||++||||+||++++|++|++++|||||||||+||+|+|||+|.+++.+               .+|.++.+|+|||
T Consensus        74 rK~k~~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~  138 (276)
T 2fim_A           74 RKRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELA  138 (276)
T ss_dssp             EECTTCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEE
T ss_pred             EeccCCCCceEEEEecchhcccCCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEE
Confidence            5789999999999999999999999999999999999999999999776422               2455667889999


Q ss_pred             EEEEeecccCCCCCceeEEeeccCCCcccCCCCCCCCcccccCCCCCCCCCccccccccccccccccccccceEEEeeCC
Q 026057           81 HISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKA  160 (244)
Q Consensus        81 ~I~Ye~nvlg~rGPRkM~v~i~~ip~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~l~nk~  160 (244)
                      +|.||+||+|++|||+|+|+||.+.    ++|+..|.+   |...++++  +..+.          +...+++++|+||+
T Consensus       139 ~V~Ye~nvlg~~gPR~m~v~iP~~~----~~~~~~~~~---p~~~~~~l--l~~~~----------~~~~~~~~~l~nK~  199 (276)
T 2fim_A          139 AVIYETNVLGFRGPRRMTVIIPGMS----AENERVPIR---PRNASDGL--LVRWQ----------NKTLESLIELHNKP  199 (276)
T ss_dssp             EEEEC---------CCEEEEEECBC----TTSCBCCCC---CSSTTCSH--HHHHH----------HTCCTTEEEEEECC
T ss_pred             EEEEEecccCCCCCeEEEEEecCcc----cCCCEeccc---CCCccccc--chhhh----------ccCCcceEeeeccC
Confidence            9999999999999999999987642    233333221   11112211  11111          23457899999999


Q ss_pred             CccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHHHHHHhCccc
Q 026057          161 PRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTK  240 (244)
Q Consensus       161 P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFai~Lssfd~K  240 (244)
                      |+|||++|||||||+||||+|||||||||+++       ++++||||||||++|+|+|||+|||||||||||||||||+|
T Consensus       200 P~wne~~~~y~LnF~GRVt~aSvKNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~K  272 (276)
T 2fim_A          200 PVWNDDSGSYTLNFQGRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGK  272 (276)
T ss_dssp             CEEETTTTEEECCCTTCCCSCCTTCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC--
T ss_pred             CcccccCCEEEEecCCeeeccccceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999975       57899999999999999999999999999999999999999


Q ss_pred             cccC
Q 026057          241 IACE  244 (244)
Q Consensus       241 ~aCe  244 (244)
                      ||||
T Consensus       273 lace  276 (276)
T 2fim_A          273 LACE  276 (276)
T ss_dssp             ----
T ss_pred             cccC
Confidence            9998

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=100.00  E-value=1.7e-73  Score=509.22  Aligned_cols=197  Identities=41%  Similarity=0.736  Sum_probs=156.1

Q ss_pred             CcccCCCCccEEEEecCCCCCCCCcceeeeeecceeecEEEEecCCCCCCccccccccccccccccccCccccCcceeEE
Q 026057            1 MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVA   80 (244)
Q Consensus         1 ~k~rr~~~SnYiIS~~~~d~sr~s~~yvGKLRSNflGTkF~iyD~g~~~~~a~~~~~~~~r~~~~~q~sp~~~~~~~ela   80 (244)
                      +|+||++|||||||+|++|++|++++|||||||||+||+|+|||+|.+++.+               .+|.++.+|+|||
T Consensus        50 rk~~~~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~  114 (246)
T 3c5n_A           50 RKRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELA  114 (246)
T ss_dssp             EECTTCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEE
T ss_pred             eeccCCCCceEEEEeCccccccCCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEE
Confidence            5789999999999999999999999999999999999999999999776422               2455667889999


Q ss_pred             EEEEeecccCCCCCceeEEeeccCCCcccCCCCCCCCcccccCCCCCCCCCccccccccccccccccccccceEEEeeCC
Q 026057           81 HISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKA  160 (244)
Q Consensus        81 ~I~Ye~nvlg~rGPRkM~v~i~~ip~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~l~nk~  160 (244)
                      +|.||+||||++|||+|+|+||.+.    ++|+..|.+   |...++++  +..+          .+...+++++|+||+
T Consensus       115 ~v~Ye~n~l~~~gPR~m~v~iP~~~----~~~~~~~~~---p~~~~~~~--~~~~----------~~~~~~~~~~l~nK~  175 (246)
T 3c5n_A          115 AVIYETNVLGFRGPRRMTVIIPGMS----AENERVPIR---PRNASDGL--LVRW----------QNKTLESLIELHNKP  175 (246)
T ss_dssp             EEEECCCCCC---CCCEEEEEECBC----TTSCBCCCC---CSSTTSSH--HHHH----------HHTCCTTEEEEEECC
T ss_pred             EEEEEecccCCCCCeEEEEEecCcc----cCCCEeecc---CCCccccc--hhhh----------hccCCcceEEEeccC
Confidence            9999999999999999999987642    233333221   11112221  1111          123457899999999


Q ss_pred             CccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHHHHHHhCc
Q 026057          161 PRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD  238 (244)
Q Consensus       161 P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFai~Lssfd  238 (244)
                      |+|||++|||||||+||||+|||||||||+++       ++++||||||||++|+|+|||+|||||||||||||||||
T Consensus       176 P~w~e~~~~y~LnF~GRvt~aSvKNFqLv~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD  246 (246)
T 3c5n_A          176 PVWNDDSGSYTLNFQGRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD  246 (246)
T ss_dssp             CEEETTTTEEECCCTTSCCBCCTTCEEEEBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred             CcccccCCEEEEecCCeeeccccceEEEEecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence            99999999999999999999999999999975       578999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	1e-81

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  243 bits (621), Expect = 1e-81
 Identities = 86/243 (35%), Positives = 129/243 (53%), Gaps = 39/243 (16%)

Query: 2   KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
           K ++   ++Y+IS++  D+S+G  +YIG+LRSN +GTKFT+YD      +A  +   S  
Sbjct: 62  KRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT 121

Query: 62  QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
                            +A + YE NVLG +GPR+M  ++  +             + E 
Sbjct: 122 -------------LRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHET 168

Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA 181
                                  +QN   E ++ L+NK P W++  Q + LNF+GRVT A
Sbjct: 169 -------------------LLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQA 209

Query: 182 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKI 241
           SVKNFQ++          + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+
Sbjct: 210 SVKNFQIIHG-------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKL 262

Query: 242 ACE 244
           ACE
Sbjct: 263 ACE 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	100.0

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.2e-72  Score=501.09  Aligned_cols=205  Identities=41%  Similarity=0.722  Sum_probs=170.5

Q ss_pred             CcccCCCCccEEEEecCCCCCCCCcceeeeeecceeecEEEEecCCCCCCccccccccccccccccccCccccCcceeEE
Q 026057            1 MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVA   80 (244)
Q Consensus         1 ~k~rr~~~SnYiIS~~~~d~sr~s~~yvGKLRSNflGTkF~iyD~g~~~~~a~~~~~~~~r~~~~~q~sp~~~~~~~ela   80 (244)
                      +|+||++++|||||++++|++|++++|||||||||+||+|+|||+|.+++.+...             +++..+.|+|||
T Consensus        61 rK~r~~~~~~yiIS~~~~d~sr~s~~yvGKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela  127 (265)
T d1c8za_          61 RKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELA  127 (265)
T ss_dssp             EEEESSSSEEEEEESCHHHHTTTCCCCSEEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEE
T ss_pred             eeecCCCcceEEEEccHHHhcccccceeEEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeee
Confidence            4789999999999999999999999999999999999999999999887654321             112234578999


Q ss_pred             EEEEeecccCCCCCceeEEeeccCCCcccCCCCCCCCcccccCCCCCCCCCccccccccccccccccccccceEEEeeCC
Q 026057           81 HISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKA  160 (244)
Q Consensus        81 ~I~Ye~nvlg~rGPRkM~v~i~~ip~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~l~nk~  160 (244)
                      +|+||+||||++|||+|+|+||.++.....      .  ...+ ..+..+.+..+          .+...+++++|+||+
T Consensus       128 ~V~Ye~n~l~~rGPR~m~~~ip~~~~~~~~------~--~~~p-~~~~~~~~~~~----------~~~~~~~~~~l~~k~  188 (265)
T d1c8za_         128 AVCYETNVLGFKGPRKMSVIVPGMNMVHER------V--CIRP-RNEHETLLARW----------QNKNTESIIELQNKT  188 (265)
T ss_dssp             EEEECCCCSSCCSCCCEEEEEECBCTTSCB------C--CCCC-SSTTSSHHHHH----------HTTCCSSEEEEEECC
T ss_pred             EEEEeeehhccCCCceeEEEecCCCccccc------c--ccCC-CCcchhhhHHh----------hccCcccceEEecCC
Confidence            999999999999999999999987643211      1  0111 11111111111          133568999999999


Q ss_pred             CccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHHHHHHhCccc
Q 026057          161 PRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTK  240 (244)
Q Consensus       161 P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFai~Lssfd~K  240 (244)
                      |+||+++++|+|||+|||++|||||||||+++       +++++|||||||++++|+|||+|||||+|||||||||||+|
T Consensus       189 P~~n~~~~~~~LnF~gRv~~~SvKNFql~~~~-------~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~K  261 (265)
T d1c8za_         189 PVWNDDTQSYVLNFHGRVTQASVKNFQIIHGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSK  261 (265)
T ss_dssp             CEEETTTTEEEEEETTEEEECBTTEEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSS
T ss_pred             CeeeccCCEEEeccCCEEeccccceEEEEeCC-------CCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999874       57889999999999999999999999999999999999999


Q ss_pred             cccC
Q 026057          241 IACE  244 (244)
Q Consensus       241 ~aCe  244 (244)
                      ||||
T Consensus       262 lace  265 (265)
T d1c8za_         262 LACE  265 (265)
T ss_dssp             CCCC
T ss_pred             cccC
Confidence            9998