Citrus Sinensis ID: 026059

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEAGFCN
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHccccccccccccEEEEEEEccEEEEEEEEEEEcccccccccccccccEEEEEEcccccccccccccccccccEEEEEHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHcHHHcHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHccccccccccccEEEEEEcccEEEEEEEccccccccccccHHHHHHHcEEEEHHHccccccccccccccccEEEEEcHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MFNSCDVLRPYVAHIDDIFKDftsykvrvpvtgAIILDETYERCILvkgwkgsswsfprgkknkdeeDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGvrddtafapqtKKEISEIAWQRLdelqpasddvishgvtglKLYMVAPFLASLKKWISahkpsiapkhdmplkgvcvwkaknnsigsnTIALESQLtkvasdsqppdtgpgksfrnfrFDTAAILQAMEAGFCN
Flexible Loop (DISEMBL)
mfnscdvlrPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVkgwkgsswsfprgkknkdeEDHACAIRevqeetgfdvskllnKDEFIEKIFGQQRVRLYIIAGVrddtafapqTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEAGFCN
Low Complexity Region (SEG)
MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEAGFCN
Disordered region (IsUnstruct)
****CDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSF************ACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTI**************************FRFDTAAILQA*******
Disordered Region (DISOPRED)
MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKW**************************************************************FDTAAILQAME*****
Disordered Region (DISEMBL)
MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWS***********DHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQL*************PGKSFRNFRFDTAAILQAMEAGFCN
Disordered Region (DISPRO)
MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK****************************************************FRNFRFDTAAILQAMEAGFCN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEAGFCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q8GW31	373	mRNA-decapping enzyme sub	yes	no	0.987	0.646	0.591	2e-94
O13828	741	mRNA decapping complex su	yes	no	0.676	0.222	0.505	1e-39
Q9CYC6	422	m7GpppN-mRNA hydrolase OS	yes	no	0.688	0.398	0.430	6e-34
Q8IU60	420	m7GpppN-mRNA hydrolase OS	yes	no	0.688	0.4	0.418	1e-33
Q5REQ8	385	m7GpppN-mRNA hydrolase OS	yes	no	0.688	0.436	0.418	2e-33
O62255	786	mRNA-decapping enzyme 2 O	yes	no	0.700	0.217	0.369	1e-28
Q75BK1	880	mRNA-decapping enzyme sub	yes	no	0.614	0.170	0.378	6e-27
P53550	970	mRNA-decapping enzyme sub	yes	no	0.643	0.161	0.325	1e-24
A6ZRW5	970	mRNA-decapping enzyme sub	N/A	no	0.643	0.161	0.325	1e-24
Q5UQW2	360	Putative mRNA-decapping p	N/A	no	0.352	0.238	0.378	1e-05

>sp|Q8GW31|DCP2_ARATH mRNA-decapping enzyme subunit 2 OS=Arabidopsis thaliana GN=DCP2 PE=1 SV=1

 Score =  345 bits (884), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/291 (59%), Positives = 202/291 (69%), Gaps = 50/291 (17%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRG 60
           +FNSCDVLRPYV HIDDIFKDFTSYK RVPVTGAIILDETYERC+LVKGWKGSSWSFPRG
Sbjct: 80  LFNSCDVLRPYVTHIDDIFKDFTSYKCRVPVTGAIILDETYERCLLVKGWKGSSWSFPRG 139

Query: 61  KKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQ 120
           KK+KDEEDHACAIREV EETGFDVSKLL ++E+IE +F QQRVRLYI+AGV +DT FAP 
Sbjct: 140 KKSKDEEDHACAIREVLEETGFDVSKLLKREEYIEFVFRQQRVRLYIVAGVTEDTVFAPL 199

Query: 121 TKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDM 180
           TKKEISEI W RLD LQPAS++VI+HGV+GLKLYMVAPFL+SLK WI  H   +A + + 
Sbjct: 200 TKKEISEITWHRLDHLQPASNEVITHGVSGLKLYMVAPFLSSLKSWILKHPSPVARRPNK 259

Query: 181 PLKGVCVWKAKNNSIGSNTIALESQ-------LTKVASDSQPP----------------- 216
           PLK +CVW A+ +  G+ T  +ESQ        T + S+S+ P                 
Sbjct: 260 PLKALCVWNARTSVGGNGTATVESQNRKSELRTTTMESNSRKPELKRTTMESHSTKPELR 319

Query: 217 --------------------------DTGPGKSFRNFRFDTAAILQAMEAG 241
                                     D  PG SF NF+F+ + ILQA+E+G
Sbjct: 320 KGTMESHNTTATVESHNTKPVVDHSQDIKPGGSFINFKFNQSVILQALESG 370

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Essential for postembryonic development, especially during the formation of the shoot apical meristem (SAM).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 2

>sp|O13828|DCP2_SCHPO mRNA decapping complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dcp2 PE=1 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
           +F  C +L  +    ++ F DF  YK R+PV GAI+LD + ++C+LVKGWK SS W FP+
Sbjct: 68  LFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPK 127

Query: 60  GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
           GK +KDE D  CAIREV EETGFD S  +N +EFI+     Q VRLYII G+  DT F  
Sbjct: 128 GKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFES 187

Query: 120 QTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 167
           +T+KEIS+I W  L +L P         +   K YMV PFLA LKKWI
Sbjct: 188 RTRKEISKIEWHNLMDL-PTFKKNKPQTMKN-KFYMVIPFLAPLKKWI 233

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9CYC6|DCP2_MOUSE m7GpppN-mRNA hydrolase OS=Mus musculus GN=Dcp2 PE=1 SV=2

 Score =  144 bits (363), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 4/172 (2%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKG-SSWSFPR 59
           +F+ C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct: 69  VFSHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query: 60  GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
           GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII GV  DT F P
Sbjct: 129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGVPKDTKFNP 188

Query: 120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 168
           +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct: 189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Plays a role in replication-dependent histone mRNA degradation. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Has higher activity towards mRNAs that lack a poly(A) tail. Has no activity towards a cap structure lacking an RNA moiety.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q8IU60|DCP2_HUMAN m7GpppN-mRNA hydrolase OS=Homo sapiens GN=DCP2 PE=1 SV=2

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 4/172 (2%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKG-SSWSFPR 59
           +F+ C  L P    ++ +  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct: 69  VFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query: 60  GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
           GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct: 129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 188

Query: 120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 168
           +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct: 189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Plays a role in replication-dependent histone mRNA degradation. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Has higher activity towards mRNAs that lack a poly(A) tail. Has no activity towards a cap structure lacking a RNA moiety.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q5REQ8|DCP2_PONAB m7GpppN-mRNA hydrolase OS=Pongo abelii GN=DCP2 PE=2 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 4/172 (2%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKG-SSWSFPR 59
           +F+ C  L P    ++ +  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct: 69  VFSHCPFLLPEGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query: 60  GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
           GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct: 129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 188

Query: 120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 168
           +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct: 189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Plays a role in replication-dependent histone mRNA degradation. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Has higher activity towards mRNAs that lack a poly(A) tail. Has no activity towards a cap structure lacking an RNA moiety.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|O62255|DCP2_CAEEL mRNA-decapping enzyme 2 OS=Caenorhabditis elegans GN=dcap-2 PE=2 SV=4

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 2/173 (1%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGW--KGSSWSFP 58
           M   C VLR Y    D++   F  YK  VP  GAI++D   +  +LV+ +  KG +W FP
Sbjct: 212 MCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFAKGKNWGFP 271

Query: 59  RGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFA 118
           +GK N+ E     AIRE  EETGFD      K++  ++      VRLY++  V  D  F 
Sbjct: 272 KGKINQAEPPRDAAIRETFEETGFDFGIYSEKEKKFQRFINDGMVRLYLVKNVPKDFNFQ 331

Query: 119 PQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK 171
           PQT+KEI +I W ++D+L     D +   + G K YMV PF+  ++ ++   K
Sbjct: 332 PQTRKEIRKIEWFKIDDLPTDKTDELPAYLQGNKFYMVMPFVKDIQIYVQKEK 384

RNA-decapping enzyme, activity is affected by RNA sequence. Does not bind cap. May contribute to gene regulation in multiple RNA pathways including monomethylguanosine- and trimethylgaunosine-capped RNAs.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q75BK1|DCP2_ASHGO mRNA-decapping enzyme subunit 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DCP2 PE=3 SV=1

 Score =  120 bits (302), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 6/156 (3%)

Query: 16  DDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIRE 75
           ++  + F+ YK  +PV GA I +ET  + +LVKG +  SWSFPRGK +KDE+D  C IRE
Sbjct: 90  EEALQKFSKYKKSIPVRGAAIFNETLNKILLVKGTESDSWSFPRGKISKDEDDVDCCIRE 149

Query: 76  VQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDE 135
           V EE GFD++  + +D++IE+  G +  ++Y++ GV  D AF PQ + EI +I W+   +
Sbjct: 150 VMEEIGFDLTNYVLEDQYIERNIGGKNYKIYLVKGVPQDFAFKPQVRNEIEKIEWRDFWK 209

Query: 136 LQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK 171
           L  +         +  K Y+V+  +  L  W+   K
Sbjct: 210 LSRSIHK------SNNKFYLVSSMVKPLSLWVKKQK 239

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P53550|DCP2_YEAST mRNA-decapping enzyme subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCP2 PE=1 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 6/163 (3%)

Query: 5   CDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNK 64
           C ++  +   +D+  + F+ YK  +PV GA I +E   + +LV+G +  SWSFPRGK +K
Sbjct: 79  CPLVWKWDIRVDEALQQFSKYKKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISK 138

Query: 65  DEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKE 124
           DE D  C IREV+EE GFD++  ++ ++FIE+    +  ++++I+GV +   F PQ + E
Sbjct: 139 DENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNE 198

Query: 125 ISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 167
           I +I W    ++        +   + +K Y++   +  L  W+
Sbjct: 199 IDKIEWFDFKKISK------TMYKSNIKYYLINSMMRPLSMWL 235

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A6ZRW5|DCP2_YEAS7 mRNA-decapping enzyme subunit 2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DCP2 PE=3 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 6/163 (3%)

Query: 5   CDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNK 64
           C ++  +   +D+  + F+ YK  +PV GA I +E   + +LV+G +  SWSFPRGK +K
Sbjct: 79  CPLVWKWDIRVDEALQQFSKYKKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISK 138

Query: 65  DEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKE 124
           DE D  C IREV+EE GFD++  ++ ++FIE+    +  ++++I+GV +   F PQ + E
Sbjct: 139 DENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNE 198

Query: 125 ISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 167
           I +I W    ++        +   + +K Y++   +  L  W+
Sbjct: 199 IDKIEWFDFKKISK------TMYKSNIKYYLINSMMRPLSMWL 235

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5UQW2|DIPP_MIMIV Putative mRNA-decapping protein OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L375 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 50  WKGSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVS--KLLNKDEFI-EKIFGQQRV-- 103
           WK   W FP+G+++K  EE+  CA RE +EETG+  S   +LNK E I EK+ G   V  
Sbjct: 232 WKSPEWGFPKGRRDKRSEENMVCACREFEEETGYKKSDYSVLNKIEPIEEKLTGTNGVNY 291

Query: 104 -RLYIIA--GVRDDTAFAPQTKKEISEIAWQRLDE 135
             +Y +A      ++        EI EI W   DE
Sbjct: 292 KHIYYLAINNCDINSDLTDYDTYEIGEIKWFTYDE 326

Might function as a decapping enzyme required for the removal of the 5'-end m7GpppN cap tethered to viral and host mRNAs to allow their decay in cells. In addition to the mRNA cap, probably also efficiently hydrolyzes diphosphoinositol polyphosphates.

Acanthamoeba polyphaga (taxid: 5757)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
224097907	322	predicted protein [Populus trichocarpa]	0.991	0.751	0.818	1e-118
359806604	318	uncharacterized protein LOC100807659 [Gl	1.0	0.767	0.815	1e-117
225449050	321	PREDICTED: mRNA decapping complex subuni	0.991	0.753	0.814	1e-116
224113033	322	predicted protein [Populus trichocarpa]	0.991	0.751	0.822	1e-116
118482684	322	unknown [Populus trichocarpa]	0.991	0.751	0.818	1e-115
359806602	318	uncharacterized protein LOC100784829 [Gl	1.0	0.767	0.799	1e-114
147785002	318	hypothetical protein VITISV_019659 [Viti	0.991	0.761	0.664	1e-107
449464384	319	PREDICTED: mRNA-decapping enzyme subunit	0.979	0.749	0.748	1e-102
449449314	314	PREDICTED: mRNA-decapping enzyme subunit	0.967	0.751	0.716	1e-101
30684475	373	mRNA-decapping enzyme subunit 2 [Arabido	0.987	0.646	0.591	1e-92

>gi|224097907|ref|XP_002311091.1| predicted protein [Populus trichocarpa] gi|222850911|gb|EEE88458.1| predicted protein [Populus trichocarpa]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/242 (81%), Positives = 224/242 (92%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRG 60
           MFNSCDVLRPYVAHIDDIFKDFTSYKV+VPVTGAIILDET+ERC+LVKGWKG+SWSFPRG
Sbjct: 79  MFNSCDVLRPYVAHIDDIFKDFTSYKVKVPVTGAIILDETFERCLLVKGWKGTSWSFPRG 138

Query: 61  KKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQ 120
           KKNKDEEDHACA+REV EETGFDVS LLNKD++IE++FGQQRVRLYIIAGV+DDTAFAP 
Sbjct: 139 KKNKDEEDHACAVREVLEETGFDVSNLLNKDDYIEEMFGQQRVRLYIIAGVKDDTAFAPL 198

Query: 121 TKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDM 180
           TKKEISEIAWQRLD+LQPAS +VIS  +TGLKLYMVAPFLASLK WIS+H+  +AP+ DM
Sbjct: 199 TKKEISEIAWQRLDDLQPASYEVISRSITGLKLYMVAPFLASLKSWISSHQLPVAPRLDM 258

Query: 181 PLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEA 240
           PLK +CVWKA+NNSIGS+T+ +ES L K  SD+ PPD GPGKSFRNFRFDTA+IL+AME+
Sbjct: 259 PLKAMCVWKARNNSIGSSTVIMESHLNKPGSDAHPPDMGPGKSFRNFRFDTASILRAMES 318

Query: 241 GF 242
           GF
Sbjct: 319 GF 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806604|ref|NP_001241527.1| uncharacterized protein LOC100807659 [Glycine max] gi|255640283|gb|ACU20431.1| unknown [Glycine max]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/244 (81%), Positives = 220/244 (90%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRG 60
           +FNSCDVL+PYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERC+LVKGWKGSSWSFPRG
Sbjct: 75  LFNSCDVLKPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCLLVKGWKGSSWSFPRG 134

Query: 61  KKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQ 120
           KK+KDEEDHACAIREV EETGFDVSKLLNKDE++E IFGQQRVRLYIIAGV+DDTAFAP 
Sbjct: 135 KKSKDEEDHACAIREVMEETGFDVSKLLNKDEYLEVIFGQQRVRLYIIAGVKDDTAFAPL 194

Query: 121 TKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDM 180
           TKKEISEIAW RLDELQPASD+VIS  +TGLKLYMVAPFLASLK WIS H+P++AP+ D+
Sbjct: 195 TKKEISEIAWHRLDELQPASDEVISRSITGLKLYMVAPFLASLKSWISTHQPAMAPRPDL 254

Query: 181 PLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEA 240
           PLKG+CVWKAK  SIGS++  ++ Q TK   DS  PD GPGKSFRNFRFDTA+ILQAME 
Sbjct: 255 PLKGICVWKAKPGSIGSSSTVMDIQPTKPEPDSHTPDLGPGKSFRNFRFDTASILQAMET 314

Query: 241 GFCN 244
            F +
Sbjct: 315 SFSS 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449050|ref|XP_002274358.1| PREDICTED: mRNA decapping complex subunit 2 [Vitis vinifera] gi|296086018|emb|CBI31459.3| unnamed protein product [Vitis vinifera]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/242 (81%), Positives = 219/242 (90%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRG 60
           +FNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDET+ERC+LVKGWKG+SWSFPRG
Sbjct: 78  LFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETFERCLLVKGWKGTSWSFPRG 137

Query: 61  KKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQ 120
           KKNKDEEDH CAIREVQEETGFDVSKLLN+DE+IE+IFGQQRVRLYIIAGV+DDTAFAP 
Sbjct: 138 KKNKDEEDHTCAIREVQEETGFDVSKLLNQDEYIEEIFGQQRVRLYIIAGVKDDTAFAPL 197

Query: 121 TKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDM 180
           TKKEISEI+W RLD+LQP S DVIS G++G+KLYMVAPFL SLK WISAH+P IAPK D 
Sbjct: 198 TKKEISEISWHRLDDLQPVSGDVISRGLSGVKLYMVAPFLLSLKSWISAHQPPIAPKFDA 257

Query: 181 PLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEA 240
           P KG CVWKAKN+S GS+T+  E+Q TK  SD  PPDTGPG+SFRNFRFDT AIL+AM++
Sbjct: 258 PAKGFCVWKAKNSSTGSSTMIAENQATKPVSDVHPPDTGPGRSFRNFRFDTTAILKAMDS 317

Query: 241 GF 242
            F
Sbjct: 318 AF 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113033|ref|XP_002316368.1| predicted protein [Populus trichocarpa] gi|222865408|gb|EEF02539.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/242 (82%), Positives = 217/242 (89%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRG 60
           MFNSCDVLRPYVAHIDDIFKDFTSYKV+VPVTGAIILDET+ERC+LVKGWKG+SWSFPRG
Sbjct: 79  MFNSCDVLRPYVAHIDDIFKDFTSYKVKVPVTGAIILDETFERCLLVKGWKGTSWSFPRG 138

Query: 61  KKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQ 120
           KKNKDEEDHACAIREV EETGFDVS LLNKD++IE++FGQQRVRLYIIAGV+ DTAFAP 
Sbjct: 139 KKNKDEEDHACAIREVLEETGFDVSNLLNKDDYIEEMFGQQRVRLYIIAGVKYDTAFAPL 198

Query: 121 TKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDM 180
           TKKEISEIAWQRLDELQ ASD+VIS  +TGLKLYMVAPFLASLK WI +H+P  AP+ DM
Sbjct: 199 TKKEISEIAWQRLDELQSASDEVISRSITGLKLYMVAPFLASLKSWILSHQPPAAPRPDM 258

Query: 181 PLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEA 240
           PLK  CVWKAKN S+GS T+  ES LTK   D+ P D GPGKSFRNFRFDTAAILQAME+
Sbjct: 259 PLKATCVWKAKNTSLGSGTVITESHLTKPVFDAHPLDMGPGKSFRNFRFDTAAILQAMES 318

Query: 241 GF 242
           GF
Sbjct: 319 GF 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482684|gb|ABK93261.1| unknown [Populus trichocarpa]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/242 (81%), Positives = 216/242 (89%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRG 60
           MFNSCDVLRPYVAHIDDIFKDFTSYKV+VPVTGAIILDET+ERC+LVKGWKG+SWSFPRG
Sbjct: 79  MFNSCDVLRPYVAHIDDIFKDFTSYKVKVPVTGAIILDETFERCLLVKGWKGTSWSFPRG 138

Query: 61  KKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQ 120
           KKNKDEEDHACAIREV EETGFDVS LLNKD++IE++FGQQRVRLYIIAGV+ DTAFAP 
Sbjct: 139 KKNKDEEDHACAIREVLEETGFDVSNLLNKDDYIEEMFGQQRVRLYIIAGVKYDTAFAPL 198

Query: 121 TKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDM 180
           TKKEISEIAWQRLDELQ ASD+VIS  +TGLKLYMVAPFL SLK WI +H+P  AP+ DM
Sbjct: 199 TKKEISEIAWQRLDELQSASDEVISRSITGLKLYMVAPFLVSLKSWILSHQPPAAPRPDM 258

Query: 181 PLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEA 240
           PLK  CVWKAKN S+GS T+  ES LTK   D+ P D GPGKSFRNFRFDTAAILQAME+
Sbjct: 259 PLKATCVWKAKNTSLGSGTVITESHLTKPVFDAHPLDMGPGKSFRNFRFDTAAILQAMES 318

Query: 241 GF 242
           GF
Sbjct: 319 GF 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806602|ref|NP_001241271.1| uncharacterized protein LOC100784829 [Glycine max] gi|255641443|gb|ACU20997.1| unknown [Glycine max]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/244 (79%), Positives = 217/244 (88%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRG 60
           +FNSCDV +PYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERC+LVKGWKG+SWSFPRG
Sbjct: 75  LFNSCDVFQPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCLLVKGWKGTSWSFPRG 134

Query: 61  KKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQ 120
           KK+KDEEDHAC+IREV EETGFDVSKLLNKDE++E IFGQQRVRLYIIAGV+DDTAFAP 
Sbjct: 135 KKSKDEEDHACSIREVMEETGFDVSKLLNKDEYLEVIFGQQRVRLYIIAGVKDDTAFAPL 194

Query: 121 TKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDM 180
           TKKEISEIAW RLD+LQPASD+VIS  +TGLKLYMVAPFLASLK WIS H P++AP+ D+
Sbjct: 195 TKKEISEIAWHRLDDLQPASDEVISRSITGLKLYMVAPFLASLKSWISIHHPAMAPRPDL 254

Query: 181 PLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEA 240
           PLKG+CVWKAK  SIGS++  ++ Q TK   DS   D GPGKSFRNFRFDTA ILQAMEA
Sbjct: 255 PLKGICVWKAKPGSIGSSSTVMDIQPTKPEPDSHTLDMGPGKSFRNFRFDTALILQAMEA 314

Query: 241 GFCN 244
            F +
Sbjct: 315 SFSS 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785002|emb|CAN75444.1| hypothetical protein VITISV_019659 [Vitis vinifera]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/292 (66%), Positives = 217/292 (74%), Gaps = 50/292 (17%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYER----------------- 43
           +  +CDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDET+ER                 
Sbjct: 25  LCTNCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETFERVKVEIFHGNVKSSLLRA 84

Query: 44  ---------------------------------CILVKGWKGSSWSFPRGKKNKDEEDHA 70
                                            C+LVKGWKG+SWSFPRGKKNKDEEDH 
Sbjct: 85  WKELHPVAMGKKQSPLRPSSSGKRLGGFVGVSQCLLVKGWKGTSWSFPRGKKNKDEEDHT 144

Query: 71  CAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAW 130
           CAIREVQEETGFDVSKLLN+DE+IE+IFGQQRVRLYIIAGV+DDTAFAP TKKEISEI+W
Sbjct: 145 CAIREVQEETGFDVSKLLNQDEYIEEIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEISW 204

Query: 131 QRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKA 190
            RLD+LQP S DVIS G++G+KLYMVAPFL SLK WISAH+P IAPK D P KG CVWKA
Sbjct: 205 HRLDDLQPVSGDVISRGLSGVKLYMVAPFLLSLKSWISAHQPPIAPKFDAPAKGFCVWKA 264

Query: 191 KNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEAGF 242
           KN+S GS+T+  E+Q TK  SD  PPDTGPG+SFRNFRFDT AIL+AM++ F
Sbjct: 265 KNSSTGSSTMIAENQATKPVSDVHPPDTGPGRSFRNFRFDTTAILKAMDSAF 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464384|ref|XP_004149909.1| PREDICTED: mRNA-decapping enzyme subunit 2-like [Cucumis sativus] gi|449490388|ref|XP_004158591.1| PREDICTED: mRNA-decapping enzyme subunit 2-like [Cucumis sativus]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/243 (74%), Positives = 209/243 (86%), Gaps = 4/243 (1%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRG 60
           MF SCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDET+ERC+LVKGWKGSSWSFPRG
Sbjct: 79  MFKSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETFERCLLVKGWKGSSWSFPRG 138

Query: 61  KKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQ 120
           KK+KDEEDHACAIREV EETGFD+S LL K E+IE IFG QRVRLYIIAGV+DD  FAPQ
Sbjct: 139 KKSKDEEDHACAIREVLEETGFDISNLLKKSEYIEVIFGPQRVRLYIIAGVKDDNLFAPQ 198

Query: 121 TKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDM 180
           TKKEISEIAW RLD+L+PASD+VIS G++GLKLYM+APFLASL+ WI  H P + P  D+
Sbjct: 199 TKKEISEIAWHRLDDLEPASDNVISRGMSGLKLYMIAPFLASLRSWILTHHPPVRPNPDI 258

Query: 181 PLKGVCVWKAKN-NSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAME 239
           P++G+ VWKAKN +   S+TI +ESQ++K   +    DTGPGKSFRNF+FDTA+ILQ+ME
Sbjct: 259 PIRGLTVWKAKNSSIGSSSTIIMESQISKAEVEV---DTGPGKSFRNFKFDTASILQSME 315

Query: 240 AGF 242
             F
Sbjct: 316 RAF 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449314|ref|XP_004142410.1| PREDICTED: mRNA-decapping enzyme subunit 2-like [Cucumis sativus] gi|449487206|ref|XP_004157527.1| PREDICTED: mRNA-decapping enzyme subunit 2-like [Cucumis sativus]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/243 (71%), Positives = 204/243 (83%), Gaps = 7/243 (2%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRG 60
           +FNSCDVL+PYV HIDDIFKDFTSYK+RVPVTG IILDET+ERC+LVKGWKGSSWSFPRG
Sbjct: 78  LFNSCDVLKPYVPHIDDIFKDFTSYKLRVPVTGGIILDETFERCLLVKGWKGSSWSFPRG 137

Query: 61  KKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQ 120
           KK+KDEEDHACAIREV EETGFDV+  L K++FIE +FGQQRVRLYIIAGV++DTAFAP 
Sbjct: 138 KKSKDEEDHACAIREVLEETGFDVTPFLIKEDFIEVMFGQQRVRLYIIAGVKNDTAFAPL 197

Query: 121 TKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDM 180
           TKKEISEIAW RLD+L P SDDVISHG+TGLKLYMVAPFL SL+ WI  H+P +AP  DM
Sbjct: 198 TKKEISEIAWHRLDDLLPVSDDVISHGITGLKLYMVAPFLESLRSWILKHQPPVAPNFDM 257

Query: 181 PLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEA 240
           P+KG  +WK KN S+ +++I  ++Q  K+ SD       PG+S RNF+FDTA+IL AME+
Sbjct: 258 PVKGFTMWKVKNTSMSNSSIIFDNQPIKLDSD-------PGRSLRNFKFDTASILHAMES 310

Query: 241 GFC 243
            F 
Sbjct: 311 AFA 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684475|ref|NP_196861.2| mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana] gi|75328895|sp|Q8GW31.1|DCP2_ARATH RecName: Full=mRNA-decapping enzyme subunit 2; Short=AtDCP2; Short=Protein DECAPPING 2; AltName: Full=M(7)GpppN-mRNA hydrolase DCP2; AltName: Full=Protein TRIDENT gi|26453220|dbj|BAC43684.1| unknown protein [Arabidopsis thaliana] gi|28950945|gb|AAO63396.1| At5g13570 [Arabidopsis thaliana] gi|332004529|gb|AED91912.1| mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 172/291 (59%), Positives = 202/291 (69%), Gaps = 50/291 (17%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRG 60
           +FNSCDVLRPYV HIDDIFKDFTSYK RVPVTGAIILDETYERC+LVKGWKGSSWSFPRG
Sbjct: 80  LFNSCDVLRPYVTHIDDIFKDFTSYKCRVPVTGAIILDETYERCLLVKGWKGSSWSFPRG 139

Query: 61  KKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQ 120
           KK+KDEEDHACAIREV EETGFDVSKLL ++E+IE +F QQRVRLYI+AGV +DT FAP 
Sbjct: 140 KKSKDEEDHACAIREVLEETGFDVSKLLKREEYIEFVFRQQRVRLYIVAGVTEDTVFAPL 199

Query: 121 TKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDM 180
           TKKEISEI W RLD LQPAS++VI+HGV+GLKLYMVAPFL+SLK WI  H   +A + + 
Sbjct: 200 TKKEISEITWHRLDHLQPASNEVITHGVSGLKLYMVAPFLSSLKSWILKHPSPVARRPNK 259

Query: 181 PLKGVCVWKAKNNSIGSNTIALESQ-------LTKVASDSQPP----------------- 216
           PLK +CVW A+ +  G+ T  +ESQ        T + S+S+ P                 
Sbjct: 260 PLKALCVWNARTSVGGNGTATVESQNRKSELRTTTMESNSRKPELKRTTMESHSTKPELR 319

Query: 217 --------------------------DTGPGKSFRNFRFDTAAILQAMEAG 241
                                     D  PG SF NF+F+ + ILQA+E+G
Sbjct: 320 KGTMESHNTTATVESHNTKPVVDHSQDIKPGGSFINFKFNQSVILQALESG 370

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
RGD|1562909	422	Dcp2 "DCP2 decapping enzyme ho	0.688	0.398	0.430	9.1e-39
POMBASE|SPAC19A8.12	741	dcp2 "mRNA decapping complex c	0.836	0.275	0.444	1.5e-37
ZFIN|ZDB-GENE-040426-851	397	dcp2 "DCP2 decapping enzyme ho	0.864	0.531	0.380	8.2e-37
UNIPROTKB|G3MYZ4	428	DCP2 "Uncharacterized protein"	0.688	0.392	0.430	4.4e-36
UNIPROTKB|F1RLG6	427	DCP2 "Uncharacterized protein"	0.688	0.393	0.430	4.4e-36
MGI|MGI:1917890	422	Dcp2 "DCP2 decapping enzyme ho	0.688	0.398	0.430	1.2e-35
UNIPROTKB|E2QVY2	427	DCP2 "Uncharacterized protein"	0.688	0.393	0.424	1.5e-35
UNIPROTKB|F6Y2G7	412	DCP2 "Uncharacterized protein"	0.688	0.407	0.424	1.5e-35
UNIPROTKB|J9NVA8	422	DCP2 "Uncharacterized protein"	0.688	0.398	0.424	1.9e-35
UNIPROTKB|Q8IU60	420	DCP2 "m7GpppN-mRNA hydrolase"	0.688	0.4	0.418	2.4e-35

RGD|1562909 Dcp2 "DCP2 decapping enzyme homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 362 (132.5 bits), Expect = 9.1e-39, Sum P(3) = 9.1e-39
 Identities = 74/172 (43%), Positives = 102/172 (59%)

Query:     1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
             +F+ C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    69 VFSHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query:    60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII GV  DT F P
Sbjct:   129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGVPKDTKFNP 188

Query:   120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 168
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0016442 "RNA-induced silencing complex" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISO

GO:0071044 "histone mRNA catabolic process" evidence=ISO

POMBASE|SPAC19A8.12 dcp2 "mRNA decapping complex catalytic subunit Dcp2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 410 (149.4 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 97/218 (44%), Positives = 125/218 (57%)

Query:     1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
             +F  C +L  +    ++ F DF  YK R+PV GAI+LD + ++C+LVKGWK SS W FP+
Sbjct:    68 LFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPK 127

Query:    60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
             GK +KDE D  CAIREV EETGFD S  +N +EFI+     Q VRLYII G+  DT F  
Sbjct:   128 GKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFES 187

Query:   120 QTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHD 179
             +T+KEIS+I W  L +L P         +   K YMV PFLA LKKWI   K +IA    
Sbjct:   188 RTRKEISKIEWHNLMDL-PTFKKNKPQTMKN-KFYMVIPFLAPLKKWIK--KRNIANN-- 241

Query:   180 MPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPD 217
                      K KN S+  +  A    L+ + S + P D
Sbjct:   242 -------TTKEKNISVDVDADASSQLLSLLKSSTAPSD 272

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IGI

GO:0000287 "magnesium ion binding" evidence=TAS

GO:0000290 "deadenylation-dependent decapping of nuclear-transcribed mRNA" evidence=ISO

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IGI

GO:0000932 "cytoplasmic mRNA processing body" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005845 "mRNA cap binding complex" evidence=IGI;IDA

GO:0006397 "mRNA processing" evidence=NAS

GO:0030145 "manganese ion binding" evidence=IEA

GO:0031087 "deadenylation-independent decapping of nuclear-transcribed mRNA" evidence=ISO

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=IGI;IDA

ZFIN|ZDB-GENE-040426-851 dcp2 "DCP2 decapping enzyme homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 372 (136.0 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 83/218 (38%), Positives = 121/218 (55%)

Query:     1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
             +F+ C  L P    +  + + +  YK+ VP  GAIILDET +  ++V+G+   S W FP+
Sbjct:    69 VFSHCPFLLPQGEDVQKVLEQWKEYKMGVPTFGAIILDETLDNVLMVQGYLAKSGWGFPK 128

Query:    60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
             GK N+DE  H CA+REV EETGFD+   + K  +IE+    Q  RLYII GV  DT F P
Sbjct:   129 GKVNEDEAFHDCAVREVLEETGFDIRDRICKKTYIEQRISDQLARLYIIPGVPKDTKFNP 188

Query:   120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWISAHK-PSIA 175
             +T+KEI  I W  +++L    +D+      GL   K +M  PF+  LK+WI+ HK  S +
Sbjct:   189 KTRKEIRNIEWFPVEKLPCHRNDMTPKSKLGLAPNKFFMAIPFMRQLKEWIAKHKGESTS 248

Query:   176 PKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDS 213
                D    G    K   +    + + +ES  + V++DS
Sbjct:   249 SDEDFASNGSTPCKPFRSKPRRSQLLVES--SPVSADS 284

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

UNIPROTKB|G3MYZ4 DCP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 367 (134.2 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
 Identities = 74/172 (43%), Positives = 102/172 (59%)

Query:     1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
             +FN C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    71 LFNHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 130

Query:    60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct:   131 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 190

Query:   120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 168
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   191 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 242

GO:0071044 "histone mRNA catabolic process" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1RLG6 DCP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 367 (134.2 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
 Identities = 74/172 (43%), Positives = 102/172 (59%)

Query:     1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
             +FN C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    70 LFNHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 129

Query:    60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct:   130 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 189

Query:   120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 168
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   190 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 241

GO:0071044 "histone mRNA catabolic process" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:1917890 Dcp2 "DCP2 decapping enzyme homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 362 (132.5 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 74/172 (43%), Positives = 102/172 (59%)

Query:     1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
             +F+ C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    69 VFSHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query:    60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII GV  DT F P
Sbjct:   129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGVPKDTKFNP 188

Query:   120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 168
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=ISO;IMP

GO:0016442 "RNA-induced silencing complex" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISO

GO:0071044 "histone mRNA catabolic process" evidence=ISO

UNIPROTKB|E2QVY2 DCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 362 (132.5 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 73/172 (42%), Positives = 102/172 (59%)

Query:     1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
             +F+ C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    71 LFSHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 130

Query:    60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct:   131 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 190

Query:   120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 168
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   191 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 242

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F6Y2G7 DCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 362 (132.5 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 73/172 (42%), Positives = 102/172 (59%)

Query:     1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
             +F+ C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    56 LFSHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 115

Query:    60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct:   116 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 175

Query:   120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 168
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   176 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 227

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|J9NVA8 DCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 361 (132.1 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
 Identities = 73/172 (42%), Positives = 102/172 (59%)

Query:     1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
             +F+ C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    69 VFSHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query:    60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct:   129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 188

Query:   120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 168
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q8IU60 DCP2 "m7GpppN-mRNA hydrolase" [Homo sapiens (taxid:9606)]

 Score = 360 (131.8 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 72/172 (41%), Positives = 102/172 (59%)

Query:     1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
             +F+ C  L P    ++ +  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    69 VFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query:    60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct:   129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 188

Query:   120 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 168
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

GO:0030145 "manganese ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071044 "histone mRNA catabolic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IMP

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=IDA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0016442 "RNA-induced silencing complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0016896 "exoribonuclease activity, producing 5'-phosphomonoesters" evidence=TAS

GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GW31	DCP2_ARATH	3, ., 6, ., 1, ., 6, 2	0.5910	0.9877	0.6461	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080336 hypothetical protein (323 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	2e-73
pfam00293	133	pfam00293, NUDIX, NUDIX domain	2e-15
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	5e-14
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	9e-13
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	1e-09
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	3e-08
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	4e-08
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	2e-07
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	2e-07
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	6e-06
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	6e-06
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	7e-06
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	8e-06
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	1e-05
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	2e-05
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	5e-05
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	5e-05
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	1e-04
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	2e-04
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	4e-04
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	0.001
cd04692	144	cd04692, Nudix_Hydrolase_33, Members of the Nudix	0.001
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	0.002
PRK10776	129	PRK10776, PRK10776, nucleoside triphosphate pyroph	0.002
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	0.002
cd04697	126	cd04697, Nudix_Hydrolase_38, Members of the Nudix	0.003
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	0.003
cd04662	126	cd04662, Nudix_Hydrolase_5, Members of the Nudix h	0.003
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	0.004

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score =  219 bits (560), Expect = 2e-73
 Identities = 78/143 (54%), Positives = 103/143 (72%), Gaps = 1/143 (0%)

Query: 29  VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 88
           +PV GAIIL+E  ++ +LVKGWK  SWSFP+GK NKDE+DH CAIREV EETGFD+SK +
Sbjct: 1   IPVYGAIILNEDLDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYI 60

Query: 89  NKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGV 148
           +KD++IE I   Q V+LYI+ GV +DT F P+T+KEIS+I W  + +L    +  I  G+
Sbjct: 61  DKDDYIELIIRGQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKKIP-GL 119

Query: 149 TGLKLYMVAPFLASLKKWISAHK 171
              K +MV PF+  LKKWI+  K
Sbjct: 120 NSNKFFMVIPFIKPLKKWINRQK 142

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 70.6 bits (173), Expect = 2e-15
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 28  RVPVTGAIILDETYERCILVKGWKGSS----WSFPRGKKNKDEEDHACAIREVQEETGFD 83
           R    G ++L+E     +LV+  +       W  P GK    E     A+RE++EETG  
Sbjct: 1   RRRAVGVVLLNEDG-EVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLR 59

Query: 84  VSKLLNKDEFIEKIFGQQR--VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASD 141
           V  LL          G+         +A +          + E+SE+ W  L+EL     
Sbjct: 60  VLLLLLLGVLEYPAPGRDGGEHVHVFLAELLGGEPEPQPNEDEVSEVRWVPLEELLELLL 119

Query: 142 D 142
            
Sbjct: 120 A 120

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 66.4 bits (162), Expect = 5e-14
 Identities = 38/111 (34%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 30  PVTGAIILDETYERCILVK--GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 87
              GA+ILDE   R +LV+     G  W  P G     E     AIREV+EETG DV  L
Sbjct: 1   VAVGAVILDED-GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL 59

Query: 88  LNKDEF--IEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
                +       G+  V    +A +            EISE+ W  LDEL
Sbjct: 60  RLLGVYEVESPDEGEHAVVFVFLARLVGGEP-TLLPPDEISEVRWVTLDEL 109

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 63.0 bits (154), Expect = 9e-13
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 9/111 (8%)

Query: 33  GAIIL--DETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 90
           GAII          +L++   G  W FP+G     E+D   A+RE +EETG    +L   
Sbjct: 6   GAIIYRRLNNEIEYLLLQASYGH-WDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIV 64

Query: 91  DEFIEKIFGQQRVRL----YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQ 137
             F E +  Q R +L    Y +A +R D     +  +E  +  W   +E  
Sbjct: 65  LGFKETLNYQVRGKLKTVTYFLAELRPDV--EVKLSEEHQDYRWLPYEEAL 113

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 55.2 bits (132), Expect = 1e-09
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 28  RVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDH-ACAIREVQEETGFDV 84
              V  A+++       +L+   +  G  W  P GK    EE     A RE++EETG  V
Sbjct: 9   VRDVAVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRV 68

Query: 85  SKL-------LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKK----EISEIAWQRL 133
                                G +  R++ +A V D  A A +       E+ ++ W  L
Sbjct: 69  KDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPL 128

Query: 134 DELQ 137
           DEL 
Sbjct: 129 DELA 132

Length = 161

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 46  LVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL----------LNKDEFIE 95
           L+   +G  WS P+GK    E     A+REV+EETG                 +  + + 
Sbjct: 20  LIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVH 79

Query: 96  KIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           K      V  + +        F PQ  +E+ E+ W   DE 
Sbjct: 80  K-----TVHWW-LMRALGGE-FTPQPDEEVDEVRWLPPDEA 113

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 32  TGAIILDETYERCILVK-------GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84
            GA++      R +LV+       G     WSFP GK    E     A+RE+ EETG + 
Sbjct: 3   VGAVVFRG--GRVLLVRRANPPDAGL----WSFPGGKVELGETLEQAALRELLEETGLEA 56

Query: 85  S--KLLNKDEFIEKIFGQQRVRLYIIAGVR-DDTAFAPQTKKEISEIAWQRLDEL 136
              +LL   + IE+    +    Y++           P    +  +  W  LDEL
Sbjct: 57  EVGRLLTVVDVIERDAAGRVEFHYVLIDFLCRYLGGEPVAGDDALDARWVPLDEL 111

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 29 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84
          +P   A++ D+   R +L++      W+ P G     E     A+REV+EETG DV
Sbjct: 2  LPGVTAVVRDDE-GRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDV 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 25  YKVRVPVTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEET 80
           Y+  +   GA+I+     R +LV+       G  W+ P G     E     A RE++EET
Sbjct: 6   YRTPLVAVGALIVRN--GRILLVRRANEPGAGY-WALPGGFVEIGETLEEAARRELKEET 62

Query: 81  GFDVS--KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           G  V   +LL   +   +      V     A    +         + +E+ W  LDEL
Sbjct: 63  GLRVRVLELLAVFDDPGRDPRGHHVSFLFFA-AEPEGELLAGDGDDAAEVGWFPLDEL 119

Length = 145

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 51  KGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAG 110
            GS W+ P GK    E     A RE+QEETG     LL    ++  + G        +A 
Sbjct: 19  SGSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLL----YLFHVDGGSTRHHVFVAS 74

Query: 111 VRDDTAFAPQTKKEISEIAWQRLDELQPA 139
           V       P    EI++  W  LD L   
Sbjct: 75  VPPSAQPKPS--NEIADCRWLSLDALGDL 101

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 27/111 (24%)

Query: 48  KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL---------LNKDEFIEKIF 98
               G  W+ P GK    E    CAIRE++EETG  +  L            +E    +F
Sbjct: 22  GPGWGG-WNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF 80

Query: 99  GQQRVRLYIIAGVRDDTAFAPQTKKEISEI--AW---QRLDELQPASDDVI 144
                 +++       T F  +  KE  E    W     L  L     D  
Sbjct: 81  ------VFLA------TEFEGEPLKESEEGILDWFDIDDLPLLPMWPGDRE 119

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 44.0 bits (105), Expect = 7e-06
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 19/117 (16%)

Query: 29  VPVTGAIILDETYERCILV------KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
           + V  AII+D+     IL+      K   G  W FP GK    E      +RE++EE G 
Sbjct: 1   IEVVAAIIIDDDGR--ILIAQRPAGKHLGGL-WEFPGGKVEPGETPEQALVRELREELGI 57

Query: 83  DVS--KLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           +V   +LL     +E  +  +RV L++ +  +            E  E+ W   +EL
Sbjct: 58  EVEVGELL---ATVEHDYPDKRVTLHVFLVELWSGEPQL----LEHQELRWVPPEEL 107

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 44.0 bits (105), Expect = 8e-06
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 33 GAIILDETYERCIL--------VKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84
             +L    +  ++        V GW       P G  +  E+    A RE++EETG++ 
Sbjct: 4  AVAVLPYDDDGKVVLVRQYRPPVGGW---LLELPAGLIDPGEDPEEAARRELEEETGYEA 60

Query: 85 SKL 87
            L
Sbjct: 61 GDL 63

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 27 VRVPVTGAIILDETYERCILV---KGWKGS-SWSFPRGKKNKDEEDHACAIREVQEETGF 82
           RV V G  +L+   +  +L+   KG  G+ +W+ P G     E    CA REV EETG 
Sbjct: 1  PRVGV-GVFVLNP--KGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGL 57

Query: 83 DVSKL 87
           +  +
Sbjct: 58 HIENV 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 16/110 (14%)

Query: 34  AIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK------- 86
           A++ D    R +LV+   G  W  P G   + E     A RE+ EE G  ++        
Sbjct: 5   AVVTDAD-GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGV 63

Query: 87  LLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
             +             V ++     R DT    +   EISE  +   D L
Sbjct: 64  YYHSASGS-----WDHVIVFR---ARADTQPVIRPSHEISEARFFPPDAL 105

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 33  GAIILDETYERCILVKGWKGSS---WSFPRGKKNKDEEDHACAIREVQEETGFDV--SKL 87
           GA IL +   + +LVK  +      W  P GK +  E      +RE++EETG  +  ++L
Sbjct: 6   GAAILRDD-GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRL 64

Query: 88  LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTK----KEISEIAWQRLDEL-QP 138
           L   + I +   Q  V    +A       F+ + +     ++ E+ W  LD L QP
Sbjct: 65  LCVVDHIIEEPPQHWVAPVYLA-----ENFSGEPRLMEPDKLLELGWFALDALPQP 115

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 23/121 (19%)

Query: 33  GAIILDETYERCILV---KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN 89
           G ++L+E  E  +LV   +    + W  P G  +  E+    A+REV EETG        
Sbjct: 6   GGLVLNEKNE--VLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETG-------I 56

Query: 90  KDEFIEKIFGQQ--------RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL--QPA 139
             EF+  + G +        +  LY I  ++  +        EI+   W  L+E   QP 
Sbjct: 57  DTEFVS-VVGFRHAHPGAFGKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPI 115

Query: 140 S 140
           +
Sbjct: 116 T 116

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 31  VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 90
           +  A+IL     R +LV+      +  P GK    E      IRE+ EE G D    L+ 
Sbjct: 2   IAAALILVRD-GRVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLD----LDP 56

Query: 91  DEFIEKIFGQQRVRLYIIAGVR-DDTAFA------PQTKKEISEIAW 130
           D       G  R       GV    T +       P    EI EI W
Sbjct: 57  DSLEY--LGTFRAPAANEPGVDVRATVYVAELTGEPVPAAEIEEIRW 101

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 29/113 (25%), Positives = 39/113 (34%), Gaps = 7/113 (6%)

Query: 29  VPVTGAIILDETYERCIL----VKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84
           V    A+I+ +     IL     +      W  P GK  + E       REV EETG  V
Sbjct: 1   VVAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV 60

Query: 85  SKLLNKD-EFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           +  L        +  G   V   +        A   +   E  E AW  L+EL
Sbjct: 61  TPFLRYPSTVTHEDSGVYNVIYLVFVCEALSGAV--KLSDEHEEYAWVTLEEL 111

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 21/127 (16%)

Query: 29  VPVT----GAIILDETYERCILVK---GWKGSSWSFPRGKKNKDEEDHACAIREVQEETG 81
           V V     GA+IL+E     +LV+   G K   W  P G     E     A+RE  EETG
Sbjct: 9   VEVEARAAGAVILNE-RNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETG 67

Query: 82  FDVSKLLNKDEFIEKIFGQ-----QRVRLYIIAGVRDDTAFAPQTKKEISE---IAWQRL 133
             V       +F+    G+       +R   +A     T  AP+   EI+E    + + +
Sbjct: 68  LRVR----PVKFLGTYLGRFDDGVLVLRHVWLAEPEGQTL-APKFTDEIAEASFFSREDV 122

Query: 134 DELQPAS 140
            +L    
Sbjct: 123 AQLYAQG 129

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 72  AIREVQEETGFDVS--KLLNKD---EFIEKIFGQQRVRLYIIAGVRDDTAFAPQTK-KEI 125
           A RE++EETG +V   +LL      EF  K  G     +  +  V             E 
Sbjct: 49  ARRELKEETGLEVEELELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFGGKLVPDGDET 108

Query: 126 SEIAWQRLDELQP 138
            E+ +  LDEL  
Sbjct: 109 LELKFFSLDELPE 121

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 72  AIREVQEETGFDVSK--------LLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKK 123
            IRE++EE G DVS            + + I K+  ++   +Y+         F  Q K+
Sbjct: 53  GIRELEEELGLDVSADDLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQ-KE 111

Query: 124 EISEIAWQRLDEL 136
           E++ +    LDE 
Sbjct: 112 EVAGVVLIPLDEF 124

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 144

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 18/102 (17%)

Query: 53  SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-----------------LNKDEFIE 95
            +W FP+G  ++ E+    A+RE++EETG D   +                 L    +  
Sbjct: 27  GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKLKIWGG 86

Query: 96  KIFGQ-QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           +  GQ Q+  L+   G   +         E  E  W  L+EL
Sbjct: 87  RYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEEL 128

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 55 WSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEF 93
          W FP GK    E      IRE+QEE G  V    L  K E+
Sbjct: 33 WEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEY 73

Length = 129

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 22/93 (23%)

Query: 55  WSFPRGKKNKDEEDH---ACAIREVQEETGFDVSKLLNKDEFIEKIFGQ----QRVRLYI 107
            +FP GK   D  D    A A+RE +EE G     +        ++ G+         ++
Sbjct: 34  VAFPGGKV--DPGDEDPVATALREAEEEIGLPPDSV--------EVLGRLPPYYTRSGFV 83

Query: 108 I----AGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           +      V            E++E+    L  L
Sbjct: 84  VTPVVGLVPPPLPLVLN-PDEVAEVFEVPLSFL 115

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 32  TGAIILDETYERCI----LVKGWKGSSWSFPRGKKNKDEED-HACAIREVQEETGFDVSK 86
           T   + +   + C+    L K W    W    G   +  E     A RE++EE G D  +
Sbjct: 3   TYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQ 62

Query: 87  LLNKDEFIEKIFGQQRVRLYIIAGVRD-DTAFAPQTKKEISEIAWQRLDELQ 137
           L     F    +     R++        D     Q ++E+ EI W  ++E+ 
Sbjct: 63  LTPLGLF---YYDTDGNRVWGKVFSCVYDGPLKLQ-EEEVEEITWLSINEIL 110

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 33/125 (26%)

Query: 33  GAIILDETYERCILVKGWKGSS--WSFPRGKKNKDEEDHACAIREVQEETGFDV-----S 85
            +I++       +L++  K     + FP G   + E     A RE  EE G DV      
Sbjct: 3   ASIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIF 62

Query: 86  KLLNKDEFIEKIFGQQRVRLYIIAGV------------RDDTAFAPQTKKEISEIAWQRL 133
            ++N++   E  F        +I+G              DD  + P          W  L
Sbjct: 63  LIVNQNGRTEHYF-----LARVISGKLGLGVGEEFERQSDDNQYHPV---------WVDL 108

Query: 134 DELQP 138
           D+L+ 
Sbjct: 109 DQLET 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240020 cd04662, Nudix_Hydrolase_5, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 50 WKGS---SWSFPRGKKNKDEEDHACAIREVQEETGFDVS 85
          W      +WS P+G+  + E+    A RE  EETGF V 
Sbjct: 27 WANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 29  VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS--K 86
           V V  AI  D    + +LV+      WS P G  +         ++EV+EETG DV   K
Sbjct: 3   VDVRAAIFKDG---KILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRK 59

Query: 87  LL---NKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS 140
           L    ++++        Q  +L+ +  +        +   E SE+ +  LD+L P S
Sbjct: 60  LAAVDDRNKHHPPPQPYQVYKLFFLCEI---LGGEFKPNIETSEVGFFALDDLPPLS 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.92
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	99.88
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.8
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.8
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.79
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.79
PLN02325	144	nudix hydrolase	99.79
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.79
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.79
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.78
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.78
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.77
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.77
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.77
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.77
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.77
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.76
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.76
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.76
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.76
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.76
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.76
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.76
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.75
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.75
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.75
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.75
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.75
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.75
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.75
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.74
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.74
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.74
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.74
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.73
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.73
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.73
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.73
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.72
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.72
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.71
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.71
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.71
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.71
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.71
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.71
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.7
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.7
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.7
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.7
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.7
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.7
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.69
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.69
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.69
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.68
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.68
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.67
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.66
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.65
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.65
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.64
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.63
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.62
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.62
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.61
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.58
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.58
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.57
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.55
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.54
PRK10707	190	putative NUDIX hydrolase; Provisional	99.54
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.54
PRK08999	312	hypothetical protein; Provisional	99.52
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.51
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.51
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.47
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.42
PLN02709	222	nudix hydrolase	99.41
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.39
PLN03143	291	nudix hydrolase; Provisional	99.36
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.34
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.32
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.23
PLN02791	770	Nudix hydrolase homolog	99.2
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	99.05
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.01
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.92
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.84
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.46
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.39
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.18
PLN02839	372	nudix hydrolase	98.1
KOG4195	275	consensus Transient receptor potential-related cha	97.6
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	97.22
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	97.17
COG4112	203	Predicted phosphoesterase (MutT family) [General f	96.84
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	96.43
PRK10880	350	adenine DNA glycosylase; Provisional	95.98
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	95.73
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	95.05
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	94.79
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	93.63
PRK13910	289	DNA glycosylase MutY; Provisional	91.93
PF14443	126	DBC1: DBC1	81.69
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	80.38

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.92  E-value=8.9e-25  Score=173.45  Aligned_cols=144  Identities=53%  Similarity=0.987  Sum_probs=106.7

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEE
Q 026059           29 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYII  108 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~  108 (244)
                      ++++++|+++++++++||+|+...+.|+||||++|.|||+.+||+||++||||+.+..+.....+.........+++|++
T Consensus         1 ~p~~gaii~~~~~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~~~~~~~~~~~~f~~   80 (145)
T cd03672           1 IPVYGAIILNEDLDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYIELIIRGQNVKLYIV   80 (145)
T ss_pred             CCeeEEEEEeCCCCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceeeecccCCcEEEEEEE
Confidence            47889999997656999999877779999999999999999999999999999998764333333333333455677777


Q ss_pred             EeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcCCC
Q 026059          109 AGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS  173 (244)
Q Consensus       109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~~~  173 (244)
                      ..........+...+|+.++.|++++++.++.... .-++..-.+.++.|++.++++|+.+++..
T Consensus        81 ~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (145)
T cd03672          81 PGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK-IPGLNSNKFFMVIPFIKPLKKWINRQKGK  144 (145)
T ss_pred             ecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc-cccccccceEEEhHHHHHHHHHHHHhhcC
Confidence            65544332223345789999999999999853221 12233345667889999999999988653

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=99.88  E-value=2.1e-23  Score=179.77  Aligned_cols=240  Identities=43%  Similarity=0.661  Sum_probs=194.8

Q ss_pred             cCccccccccchHHHHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCC
Q 026059            4 SCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFD   83 (244)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~   83 (244)
                      .||.+.+|..++++.+.+|..|+.++++.++++++....++||++.++...|.+|.|++..+|+..+||+||+.||||.+
T Consensus        57 ~c~~~~~~~~~~~e~~~~f~~yk~~iPv~ga~ild~~~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD  136 (348)
T KOG2937|consen   57 QCPLLWPWKNEKDEAFVDFAPYKARIPVRGAIILDEKRSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFD  136 (348)
T ss_pred             CCccccchhhHHHHHHHhhccccCCCCCchHhhhhhhhhhhheeeceecccccccCccccccchhhhcchhcccchhhcC
Confidence            69999999999999999999999999999999999988899999999977799999999999999999999999999999


Q ss_pred             CCcccccceeeeeeeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccch-hhhhhhhhhHHH
Q 026059           84 VSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTG-LKLYMVAPFLAS  162 (244)
Q Consensus        84 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a-~~~~~~~p~~~~  162 (244)
                      ....+.-..++...+..+...+|.+.++..++.+.+....|++.+.|+.++++.........+++.. .+.|++.|++..
T Consensus       137 ~skql~~~e~Ie~nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t~~~s~~k~~~~~dk~~~~~~~l~v  216 (348)
T KOG2937|consen  137 YSKQLQDNEGIETNIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVPTDKKSGPKGVKSRDKNYMVCPFLRV  216 (348)
T ss_pred             HHHHhccccCcccchhhceeeeeeeccceeeeecchhhhccccceeeeehhhhcccccccCCCccccchhhcccchHHHH
Confidence            9876665666777777888999999888888888888889999999999999965433333444444 688999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCceeEEecccCCccccceeecccccccCC-------------------------------
Q 026059          163 LKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVAS-------------------------------  211 (244)
Q Consensus       163 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------  211 (244)
                      ++.|+.+..-.....+.++.+..++|.+-.+..+..+...+++.-++..                               
T Consensus       217 lkk~~~k~~~~vak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~  296 (348)
T KOG2937|consen  217 LKKWILKADEVVAKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG  296 (348)
T ss_pred             HHHHHHhccchhhcCcccCccchhHHhhhhccccccceeecccccccccccCcccccccCCccccchhhhcCCCcCCccc
Confidence            9999999877777788888888888776655433333222222221111                               


Q ss_pred             -------------------CCCCCCCCCCCCcccceeCHHHHHHHHHhccC
Q 026059          212 -------------------DSQPPDTGPGKSFRNFRFDTAAILQAMEAGFC  243 (244)
Q Consensus       212 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (244)
                                         .++-..-.++.+|-++++.-..|||.+..|++
T Consensus       297 s~~~~n~k~s~f~~nt~~~l~~i~n~~~~~s~~~~kk~qs~~lq~~~~~n~  347 (348)
T KOG2937|consen  297 SYPEKNKKFSRFINNTKVRLYHIKNSKKPDSNVSSKKNQSQILQRIRSGNS  347 (348)
T ss_pred             ccchhcccccccccCCcceeeeccccCCCccccccccchhhHHHhhhhccC
Confidence                               23333456667788999999999999999986

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=7.8e-19  Score=135.65  Aligned_cols=107  Identities=23%  Similarity=0.324  Sum_probs=71.8

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYII  108 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~  108 (244)
                      .|+++|++++ ++|||++++.  .+.|.+|||+++.|||+++||.||++||||+.+.....+..............+|++
T Consensus         4 ~~~~~v~~~~-~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (127)
T cd04670           4 GVGGLVLNEK-NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSDLYFI   82 (127)
T ss_pred             EEEEEEEcCC-CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCceeEEEE
Confidence            4566777766 4999999877  799999999999999999999999999999988744333211111111112223323


Q ss_pred             EeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          109 AGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ............+.+|+.++.|++++++..
T Consensus        83 ~~~~~~~~~~~~~~~E~~~~~w~~~~el~~  112 (127)
T cd04670          83 CRLKPLSFDINFDTSEIAAAKWMPLEEYIS  112 (127)
T ss_pred             EEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence            333221111122457888999999999976

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=1.3e-18  Score=134.65  Aligned_cols=120  Identities=23%  Similarity=0.372  Sum_probs=85.1

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee--eeCeEEEE
Q 026059           30 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK--IFGQQRVR  104 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~--~~~~~~~~  104 (244)
                      .+++++|.+.+ +++||++|..   ++.|.+|||+++.||++.+||.||++||||+++..+..+..+...  ....+.+.
T Consensus         3 ~~v~~ii~~~~-~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04678           3 VGVGVFVLNPK-GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYVT   81 (129)
T ss_pred             eEEEEEEECCC-CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEEEE
Confidence            34578888876 4999999884   789999999999999999999999999999998765444332221  12334444


Q ss_pred             EEEEEeecCCC-CcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHH
Q 026059          105 LYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI  167 (244)
Q Consensus       105 ~~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l  167 (244)
                      +|+........ .....+.+|+.+++|++++++.++                 .+++.+++.||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~-----------------~~~~~~~~~~~  128 (129)
T cd04678          82 IFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV-----------------DPLFLPLKNLF  128 (129)
T ss_pred             EEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc-----------------chhhHHHHHHh
Confidence            44444444322 111113567889999999999884                 25677777766

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.79  E-value=1.5e-18  Score=137.18  Aligned_cols=113  Identities=23%  Similarity=0.372  Sum_probs=81.8

Q ss_pred             cCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee-eC
Q 026059           24 SYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-FG   99 (244)
Q Consensus        24 ~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~-~~   99 (244)
                      ++..-..++++++++.++ ++||++++.   .+.|++|||++++||++++||.||++||||+.+..+..+..+.... .+
T Consensus         8 ~~~~~~~av~~vv~~~~~-~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   86 (142)
T cd04700           8 HVEVEARAAGAVILNERN-DVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDG   86 (142)
T ss_pred             CcceeeeeEEEEEEeCCC-cEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCC
Confidence            345566778888888764 899998765   5899999999999999999999999999999988665554433211 12


Q ss_pred             e-EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          100 Q-QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       100 ~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      . ...++|.+......  ..+...+|+.++.|++++++.++
T Consensus        87 ~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~w~~~~el~~~  125 (142)
T cd04700          87 VLVLRHVWLAEPEGQT--LAPKFTDEIAEASFFSREDVAQL  125 (142)
T ss_pred             cEEEEEEEEEEecCCc--cccCCCCCEEEEEEECHHHhhhc
Confidence            2 23355555443322  22333579999999999999984

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=9.8e-19  Score=133.32  Aligned_cols=104  Identities=22%  Similarity=0.253  Sum_probs=78.9

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC-cccccceeeeee-eCeEEEEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-KLLNKDEFIEKI-FGQQRVRLYII  108 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~-~l~~~~~~~~~~-~~~~~~~~~~~  108 (244)
                      .+.+++.+.++ ++||++|...+.|.+|||+++.||++++||+||++||||+.+. .+..+..+.... .....+++|.+
T Consensus         2 ~~~~~i~~~~~-~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~f~~   80 (120)
T cd04680           2 GARAVVTDADG-RVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVIVFRA   80 (120)
T ss_pred             ceEEEEECCCC-eEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEEEEEe
Confidence            35677787764 9999998876799999999999999999999999999999988 554444333221 23455667766


Q ss_pred             EeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          109 AGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .......   ..+++|+.++.|++++++++
T Consensus        81 ~~~~~~~---~~~~~E~~~~~w~~~~~l~~  107 (120)
T cd04680          81 RADTQPV---IRPSHEISEARFFPPDALPE  107 (120)
T ss_pred             cccCCCc---cCCcccEEEEEEECHHHCcc
Confidence            5544321   33467899999999999987

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.79  E-value=3e-18  Score=135.83  Aligned_cols=112  Identities=20%  Similarity=0.253  Sum_probs=76.3

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee----ee
Q 026059           25 YKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE----KI   97 (244)
Q Consensus        25 y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~----~~   97 (244)
                      |+.....++++|.++  ++|||++|..   .+.|.+|||++|.||++.+||+||++||||+.+.....+..+..    ..
T Consensus         5 ~~~p~~~v~~vi~~~--~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~~   82 (144)
T PLN02325          5 EPIPRVAVVVFLLKG--NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEEP   82 (144)
T ss_pred             CCCCeEEEEEEEEcC--CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecCC
Confidence            444444556667665  3999999876   58999999999999999999999999999999885443332111    11


Q ss_pred             eCeEEEEEEEEEeecCC-CCcCCCCCCceeeEEEEccccccC
Q 026059           98 FGQQRVRLYIIAGVRDD-TAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        98 ~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ...+.+.+|+.....+. ......+.+++.+++|+++++|+.
T Consensus        83 ~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~  124 (144)
T PLN02325         83 KPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPE  124 (144)
T ss_pred             CCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCCh
Confidence            22344555544443322 111222345678899999999987

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=2.2e-18  Score=132.80  Aligned_cols=105  Identities=23%  Similarity=0.341  Sum_probs=75.0

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee--ee-eCeEEEE
Q 026059           31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KI-FGQQRVR  104 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~--~~-~~~~~~~  104 (244)
                      .|+++|++.+ +++||++|.+   .+.|.+|||++|.||++++||+||++||||+.+.....+.....  .. ..+....
T Consensus         4 ~~~~~i~~~~-~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T cd04679           4 GCGAAILRDD-GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWVAP   82 (125)
T ss_pred             EEEEEEECCC-CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeEEEE
Confidence            4577777776 4999999875   58999999999999999999999999999999875443332211  11 1223344


Q ss_pred             EEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          105 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +|.+....+.  ....+.+|+.++.|+++++++.
T Consensus        83 ~f~~~~~~~~--~~~~~~~E~~~~~W~~~~~l~~  114 (125)
T cd04679          83 VYLAENFSGE--PRLMEPDKLLELGWFALDALPQ  114 (125)
T ss_pred             EEEEeecCCc--cccCCCccccEEEEeCHHHCCc
Confidence            5555443332  1223456899999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.5e-18  Score=132.63  Aligned_cols=101  Identities=18%  Similarity=0.300  Sum_probs=75.0

Q ss_pred             EEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEE
Q 026059           32 TGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLY  106 (244)
Q Consensus        32 v~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~  106 (244)
                      |++++.++  +++||+||..     .+.|++|||++|.||++++||.||++||||+.+..+..+..+.........+++|
T Consensus         3 v~~vi~~~--~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~   80 (117)
T cd04691           3 VVGVLFSD--DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTSELQLLHYY   80 (117)
T ss_pred             EEEEEEEC--CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCCCeEEEEEE
Confidence            44555555  3899999864     5799999999999999999999999999999976555555443322233456666


Q ss_pred             EEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+....+.    + ..+|+.++.|+++++++..
T Consensus        81 ~~~~~~~~----~-~~~E~~~~~W~~~~~l~~~  108 (117)
T cd04691          81 VVTFWQGE----I-PAQEAAEVHWMTANDIVLA  108 (117)
T ss_pred             EEEEecCC----C-CcccccccEEcCHHHcchh
Confidence            66554432    2 2378899999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=2.4e-18  Score=132.81  Aligned_cols=105  Identities=21%  Similarity=0.254  Sum_probs=75.9

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI  107 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~  107 (244)
                      ++++++.+.+ +++||++|.+   .+.|.+|||++|.||++++||.||++||||+.+.....+....  ........+|.
T Consensus         2 ~~~~vv~~~~-~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~--~~~~~~~~~f~   78 (123)
T cd04671           2 IVAAVILNNQ-GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEE--QGGSWFRFVFT   78 (123)
T ss_pred             EEEEEEEcCC-CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEc--cCCeEEEEEEE
Confidence            5678888776 4999999875   6899999999999999999999999999999987544332211  12334455666


Q ss_pred             EEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          108 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       108 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +....+.......++.|+.+++|+++++++.
T Consensus        79 a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~  109 (123)
T cd04671          79 GNITGGDLKTEKEADSESLQARWYSNKDLPL  109 (123)
T ss_pred             EEEeCCeEccCCCCCcceEEEEEECHHHCCC
Confidence            6554433222222356788999999999953

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.78  E-value=3.2e-18  Score=137.64  Aligned_cols=117  Identities=17%  Similarity=0.186  Sum_probs=78.4

Q ss_pred             HHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCc----cccc
Q 026059           18 IFKDFTSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK----LLNK   90 (244)
Q Consensus        18 ~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~----l~~~   90 (244)
                      .++......+.+ +++++|.++. ++|||+||..   .|.|+||||+||.|||+++||+||++||||+.+..    +..+
T Consensus         7 ~~~~~~~~~~~~-~v~~vI~~~~-g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~   84 (159)
T PRK15434          7 DFATVVRSTPLI-SLDFIVENSR-GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGV   84 (159)
T ss_pred             HHHHHhcCCceE-EEEEEEECCC-CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEE
Confidence            344444444444 5677777765 4999999875   58999999999999999999999999999998642    2222


Q ss_pred             ceeeee-e-----eC-eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           91 DEFIEK-I-----FG-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        91 ~~~~~~-~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ..+... .     .. +..+.+|.+....+.   ....++|+.+++|+++++++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~---~~~~~~E~~~~~W~~~~el~~~  137 (159)
T PRK15434         85 WQHFYDDNFSGTDFTTHYVVLGFRLRVAEED---LLLPDEQHDDYRWLTPDALLAS  137 (159)
T ss_pred             EEeecccccCCCccceEEEEEEEEEEecCCc---ccCChHHeeEEEEEeHHHhhhc
Confidence            111111 0     11 223444555443322   1223568999999999999873

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=4.2e-18  Score=130.11  Aligned_cols=103  Identities=19%  Similarity=0.355  Sum_probs=72.1

Q ss_pred             EEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC--cccccceeeeee-eCeEEEE
Q 026059           32 TGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIEKI-FGQQRVR  104 (244)
Q Consensus        32 v~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~--~l~~~~~~~~~~-~~~~~~~  104 (244)
                      |.++|.+++  +|||+||.+    ++.|++|||+++.||++.+||+||++||||+.+.  .+..+..+.... ...+.+.
T Consensus         3 v~~vi~~~~--~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   80 (120)
T cd04683           3 VYVLLRRDD--EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIG   80 (120)
T ss_pred             EEEEEEECC--EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEEE
Confidence            456666653  899999875    5799999999999999999999999999999886  343333322211 1234444


Q ss_pred             E-EEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          105 L-YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       105 ~-~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      + |.+....+.  ....+.+|+.++.|+++++|+.
T Consensus        81 ~~f~~~~~~~~--~~~~~~~e~~~~~W~~~~~l~~  113 (120)
T cd04683          81 LFFTVRRWSGE--PRNCEPDKCAELRWFPLDALPD  113 (120)
T ss_pred             EEEEEEeecCc--cccCCCCcEeeEEEEchHHCcc
Confidence            4 444333322  1223457889999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=6.5e-18  Score=132.74  Aligned_cols=108  Identities=25%  Similarity=0.352  Sum_probs=76.3

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc-----eeee-eee----
Q 026059           29 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD-----EFIE-KIF----   98 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~-----~~~~-~~~----   98 (244)
                      +.++++++++++++++||++|...+.|.+|||++|+||++++||.||++||||+.+..+....     .+.. ...    
T Consensus         2 ~~~~~~~v~~~~~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (138)
T cd03674           2 HFTASAFVVNPDRGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRG   81 (138)
T ss_pred             cEEEEEEEEeCCCCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCC
Confidence            356688888876359999998878999999999999999999999999999999876433221     1111 111    


Q ss_pred             ---CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           99 ---GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        99 ---~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                         ..+...+|.+....+..  .+..++|+.++.|++++++..
T Consensus        82 ~~~~~~~~~~y~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~  122 (138)
T cd03674          82 VPGHLHLDLRFLAVAPADDV--APPKSDESDAVRWFPLDELAS  122 (138)
T ss_pred             CCCcEEEEEEEEEEccCccc--cCCCCCcccccEEEcHHHhhh
Confidence               11233456565433321  112467889999999999965

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.77  E-value=9.3e-18  Score=130.71  Aligned_cols=125  Identities=17%  Similarity=0.229  Sum_probs=81.7

Q ss_pred             EEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee--eeeeeCeE-EEEEE
Q 026059           32 TGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKIFGQQ-RVRLY  106 (244)
Q Consensus        32 v~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~--~~~~~~~~-~~~~~  106 (244)
                      +++++.+++  ++||++|.+  ++.|.+|||++++||++.+||.||++||||+++.....+..+  ........ ...+|
T Consensus         3 v~~ii~~~~--~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f   80 (134)
T cd03675           3 VAAVVERDG--RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAF   80 (134)
T ss_pred             EEEEEEECC--EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEE
Confidence            456666653  899999886  579999999999999999999999999999998754333322  11111122 22345


Q ss_pred             EEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcC
Q 026059          107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK  171 (244)
Q Consensus       107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~  171 (244)
                      .+.. ..... .....+|+.++.|++++++..+...           +......+.+.+|+...+
T Consensus        81 ~~~~-~~~~~-~~~~~~e~~~~~w~~~~el~~~~~~-----------~~~~~~~~~i~~~l~~~~  132 (134)
T cd03675          81 AAEL-LEHLP-DQPLDSGIVRAHWLTLEEILALAAR-----------LRSPLVLRCIEDYLAGRR  132 (134)
T ss_pred             EEEE-CCCCC-CCCCCCCceeeEEEeHHHHHhhhhh-----------hcCchHHHHHHHHHhcCc
Confidence            4433 32211 1123468899999999999885421           111123566777776644

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=2.6e-18  Score=132.68  Aligned_cols=107  Identities=23%  Similarity=0.417  Sum_probs=78.6

Q ss_pred             cEEEEEEEeCCC--CEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee--ee---eCeEE
Q 026059           30 PVTGAIILDETY--ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KI---FGQQR  102 (244)
Q Consensus        30 ~vv~~ii~~~~~--~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~--~~---~~~~~  102 (244)
                      .++++|+++.+.  ++|||+++.+.+.|.+|||+++.||++++||.||++||||+.+..+..+..+..  ..   .....
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHKT   81 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcceE
Confidence            456777776642  499999998888999999999999999999999999999999876554443221  11   23345


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +++|.+.......  ....+.|+.++.|++++++.+
T Consensus        82 ~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~  115 (131)
T cd03673          82 VHWWLMRALGGEF--TPQPDEEVDEVRWLPPDEARD  115 (131)
T ss_pred             EEEEEEEEcCCCc--ccCCCCcEEEEEEcCHHHHHH
Confidence            5666655443331  112467899999999999986

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.77  E-value=3.6e-18  Score=133.54  Aligned_cols=109  Identities=22%  Similarity=0.373  Sum_probs=81.0

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEE
Q 026059           29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV  103 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~  103 (244)
                      ...+++++++.+ +++||+++.+    ++.|++|||++|.||++.+||+||++||||+.+..+..+..+.. .......+
T Consensus         2 ~~~v~v~~~~~~-~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   80 (137)
T cd03424           2 PDAVAVLPYDDD-GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERI   80 (137)
T ss_pred             CCEEEEEEEcCC-CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccE
Confidence            356788888887 4999998764    46899999999999999999999999999999976665554433 22333456


Q ss_pred             EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+|.+........ ....+.|+.++.|++++++.+.
T Consensus        81 ~~~~~~~~~~~~~-~~~~~~E~~~~~w~~~~el~~~  115 (137)
T cd03424          81 HLFLAEDLSPGEE-GLLDEGEDIEVVLVPLDEALEL  115 (137)
T ss_pred             EEEEEEccccccc-CCCCCCCeeEEEEecHHHHHHH
Confidence            6666655443221 1234678999999999999873

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.76  E-value=6.7e-18  Score=133.77  Aligned_cols=104  Identities=21%  Similarity=0.253  Sum_probs=73.7

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc--ccccee--eee------e
Q 026059           31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNKDEF--IEK------I   97 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l--~~~~~~--~~~------~   97 (244)
                      +++++|++.+ +++||+||..   +|.|.+|||+++.|||+.+||+||++||||+.+...  ..+..+  ...      .
T Consensus        14 ~v~~vI~~~~-g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~   92 (144)
T cd03430          14 SIDLIVENED-GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFGDD   92 (144)
T ss_pred             EEEEEEEeCC-CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccccccCC
Confidence            5677788776 4999999865   789999999999999999999999999999987633  222211  111      1


Q ss_pred             eCeEEE-EEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           98 FGQQRV-RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        98 ~~~~~~-~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ...+.+ .+|.+....+.   ....++|+.+++|++++++.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~W~~~~el~~  131 (144)
T cd03430          93 FSTHYVVLGYVLKLSSNE---LLLPDEQHSEYQWLTSDELLA  131 (144)
T ss_pred             CccEEEEEEEEEEEcCCc---ccCCchhccEeEEecHHHHhc
Confidence            122333 34444433322   133467899999999999986

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=8.4e-18  Score=129.60  Aligned_cols=105  Identities=24%  Similarity=0.258  Sum_probs=74.4

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc--eeee-ee---eCeEE
Q 026059           30 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD--EFIE-KI---FGQQR  102 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~--~~~~-~~---~~~~~  102 (244)
                      .+++++|++.+ +++||+|+.. .+.|.+|||+++.|||+.+||.||++||||+.+..+..+.  .+.. ..   ..+..
T Consensus         3 ~~v~~~i~~~~-~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (125)
T cd04696           3 VTVGALIYAPD-GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHFV   81 (125)
T ss_pred             cEEEEEEECCC-CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEEE
Confidence            45678888866 4999998765 7899999999999999999999999999999887543322  1111 11   12233


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +..|.+.....    ....++|+.+++|++++++.++
T Consensus        82 ~~~~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~  114 (125)
T cd04696          82 LFDFFARTDGT----EVTPNEEIVEWEWVTPEEALDY  114 (125)
T ss_pred             EEEEEEEecCC----cccCCcccceeEEECHHHHhcC
Confidence            34454543221    1233578899999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=9e-18  Score=129.02  Aligned_cols=104  Identities=19%  Similarity=0.315  Sum_probs=72.1

Q ss_pred             EEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEEE
Q 026059           32 TGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIA  109 (244)
Q Consensus        32 v~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~~  109 (244)
                      +++++++++ +++||++|.+  .+.|.+|||++|.|||+.+||+||++||||+++.....+..+ ..  .....++|.+.
T Consensus         3 ~~~ii~~~~-~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~-~~--~~~~~~~f~~~   78 (121)
T cd04669           3 ASIVIINDQ-GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIV-NQ--NGRTEHYFLAR   78 (121)
T ss_pred             eEEEEEeCC-CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEE-ee--CCcEEEEEEEE
Confidence            355666664 3999999876  478999999999999999999999999999998543222222 11  22345667676


Q ss_pred             eecCCCCcC------CCCCCceeeEEEEccccccCC
Q 026059          110 GVRDDTAFA------PQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       110 ~~~~~~~~~------~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ...+.....      ..++.+..++.|+++++|+.+
T Consensus        79 ~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l  114 (121)
T cd04669          79 VISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI  114 (121)
T ss_pred             EECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence            655432110      011345678999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.76  E-value=2.5e-18  Score=148.37  Aligned_cols=133  Identities=18%  Similarity=0.160  Sum_probs=95.2

Q ss_pred             CccCccccccccchHH------HHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHH
Q 026059            2 FNSCDVLRPYVAHIDD------IFKDFTSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAI   73 (244)
Q Consensus         2 f~~~~~l~~~~~~~~~------~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~   73 (244)
                      +++||.++......+.      .-+....|....++|.++|.++  +++||+++..  .+.|++|||++|+|||+++||.
T Consensus        99 ~~fC~~CG~~~~~~~~~~~~~C~~c~~~~yp~~~paViv~V~~~--~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~  176 (256)
T PRK00241         99 HRFCGYCGHPMHPSKTEWAMLCPHCRERYYPRIAPCIIVAVRRG--DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVA  176 (256)
T ss_pred             CccccccCCCCeecCCceeEECCCCCCEECCCCCCEEEEEEEeC--CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhh
Confidence            5788887665332211      2233566776667766666655  4999999876  6899999999999999999999


Q ss_pred             HHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC
Q 026059           74 REVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  140 (244)
Q Consensus        74 REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  140 (244)
                      ||++||||+++..+..+..... .+.+..+..|.+....++   ...+++|+.++.|+++++++.+.
T Consensus       177 REv~EEtGl~v~~~~~~~s~~~-~~p~~lm~~f~a~~~~~~---~~~~~~Ei~~a~W~~~del~~lp  239 (256)
T PRK00241        177 REVMEESGIKVKNLRYVGSQPW-PFPHSLMLGFHADYDSGE---IVFDPKEIADAQWFRYDELPLLP  239 (256)
T ss_pred             hhhhhccCceeeeeEEEEeEee-cCCCeEEEEEEEEecCCc---ccCCcccEEEEEEECHHHCcccC
Confidence            9999999999887665544322 233455666766554333   22345799999999999998753

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.76  E-value=1.7e-17  Score=131.77  Aligned_cols=109  Identities=24%  Similarity=0.465  Sum_probs=76.4

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce------eeeee-----
Q 026059           30 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE------FIEKI-----   97 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~------~~~~~-----   97 (244)
                      .++++++.+.+ +++||++|.. ++.|.+|||++++||++.+||+||++||||+.+.....+..      |....     
T Consensus         4 ~~v~~ii~~~~-~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~~~   82 (147)
T cd03671           4 PNVGVVLFNED-GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKLK   82 (147)
T ss_pred             ceEEEEEEeCC-CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhhcc
Confidence            46688888876 4999999988 46999999999999999999999999999999764332221      11110     


Q ss_pred             -----eCeEEEEEEEEEeecCCCCcCCC--CCCceeeEEEEccccccCC
Q 026059           98 -----FGQQRVRLYIIAGVRDDTAFAPQ--TKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        98 -----~~~~~~~~~~~~~~~~~~~~~~~--~~~E~~~~~W~~~~el~~~  139 (244)
                           +.....++|.+............  +++|+.++.|++++++.+.
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~  131 (147)
T cd03671          83 IWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL  131 (147)
T ss_pred             ccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHh
Confidence                 11234455555443311222222  3579999999999999874

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.76  E-value=4.5e-18  Score=134.93  Aligned_cols=113  Identities=27%  Similarity=0.401  Sum_probs=84.4

Q ss_pred             hcCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeee-
Q 026059           23 TSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF-   98 (244)
Q Consensus        23 ~~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~-   98 (244)
                      ..|.....++++++...+  ++||+||.+   .|.|.+|||++|.|||+++||.||++||||+++..+..+..+-.... 
T Consensus         4 ~~~~~p~~~v~~~i~~~~--~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd   81 (145)
T COG1051           4 MGYRTPLVAVGALIVRNG--RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRD   81 (145)
T ss_pred             ccCCCcceeeeEEEEeCC--EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCC
Confidence            456667777788888776  899999998   58999999999999999999999999999999776555544433322 


Q ss_pred             --CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           99 --GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        99 --~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                        +++...+|++....++  ....+.++...+.|+++++++..
T Consensus        82 ~r~~~v~~~~~~~~~~g~--~~~~~~~d~~~~~~~~~~~l~~~  122 (145)
T COG1051          82 PRGHHVSFLFFAAEPEGE--LLAGDGDDAAEVGWFPLDELPEL  122 (145)
T ss_pred             CceeEEEEEEEEEecCCC--cccCChhhHhhcceecHhHcccc
Confidence              2444555555554333  23333457788999999999974

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.76  E-value=1.4e-17  Score=128.02  Aligned_cols=106  Identities=21%  Similarity=0.222  Sum_probs=75.4

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee--ee-e----Ce
Q 026059           31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KI-F----GQ  100 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~--~~-~----~~  100 (244)
                      .+.+||.++  +++||+++.+   ++.|.+|||++|.||++.+||+||++||||+.+..+..+..+..  .. .    .+
T Consensus         2 ~~~~ii~~~--~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04684           2 GAYAVIPRD--GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAH   79 (128)
T ss_pred             eeEEEEEeC--CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeecc
Confidence            346677776  3999999987   49999999999999999999999999999998875444433221  11 1    13


Q ss_pred             EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          101 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ...++|.+....+... .....+|..++.|++++++...
T Consensus        80 ~~~~~f~~~~~~~~~~-~~~~~~e~~~~~W~~~~~l~~~  117 (128)
T cd04684          80 HLCVFYDARVVGGALP-VQEPGEDSHGAAWLPLDEAIER  117 (128)
T ss_pred             EEEEEEEEEEecCccc-cCCCCCCceeeEEECHHHhhcc
Confidence            3455666655443211 1234567889999999999863

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.75  E-value=7.7e-18  Score=133.66  Aligned_cols=111  Identities=23%  Similarity=0.295  Sum_probs=76.7

Q ss_pred             hcCcccccEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCC--Ccccccc-----ee-
Q 026059           23 TSYKVRVPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDV--SKLLNKD-----EF-   93 (244)
Q Consensus        23 ~~y~~~v~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v--~~l~~~~-----~~-   93 (244)
                      +.|..++.| ++++++.+ +++||++|.. ++.|++|||++|.|||+.+||+||++||||+.+  ..+..+.     .+ 
T Consensus         2 ~~~~~~~~v-~~vi~~~~-~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   79 (148)
T PRK09438          2 MPYKRPVSV-LVVIYTPD-LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYE   79 (148)
T ss_pred             CCccCceEE-EEEEEeCC-CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccc
Confidence            456666654 66666665 3899998876 689999999999999999999999999999988  3322111     01 


Q ss_pred             -e-------eeeeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           94 -I-------EKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        94 -~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                       .       .....+...++|.+....+.   .+ ..+|+.++.|++++++.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~-~~~E~~~~~W~~~~e~~~~  129 (148)
T PRK09438         80 IFPHWRHRYAPGVTRNTEHWFCLALPHER---PV-VLTEHLAYQWLDAREAAAL  129 (148)
T ss_pred             cchhhhhccccccCCceeEEEEEecCCCC---cc-ccCcccceeeCCHHHHHHH
Confidence             0       11112345567766543221   12 2358899999999999874

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.8e-17  Score=128.31  Aligned_cols=107  Identities=21%  Similarity=0.268  Sum_probs=72.1

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc--cccceeee------eeeCe
Q 026059           31 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNKDEFIE------KIFGQ  100 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l--~~~~~~~~------~~~~~  100 (244)
                      .+++||.+++  ++||++|.+  ++.|.+|||+++.|||+++||.||+.||||+.+...  ..+..+..      .....
T Consensus         3 ~a~~iv~~~~--~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04687           3 SAKAVIIKND--KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHF   80 (128)
T ss_pred             EEEEEEEECC--EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCce
Confidence            3466666653  999999876  578999999999999999999999999999998742  22222221      11122


Q ss_pred             E-EEEEEEEEeecCCC-CcCCCCCCceeeEEEEccccccCC
Q 026059          101 Q-RVRLYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       101 ~-~~~~~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      + ...+|.+....+.. ......+.+..+++|++++++.++
T Consensus        81 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~  121 (128)
T cd04687          81 HQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI  121 (128)
T ss_pred             eEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence            3 34555555443321 111122345678999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.2e-17  Score=128.71  Aligned_cols=106  Identities=22%  Similarity=0.258  Sum_probs=74.9

Q ss_pred             EEEEEEEeCC--CCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc-cccceeeeeeeC-----eEE
Q 026059           31 VTGAIILDET--YERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIEKIFG-----QQR  102 (244)
Q Consensus        31 vv~~ii~~~~--~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l-~~~~~~~~~~~~-----~~~  102 (244)
                      ++++|+++.+  .+++||+++.+.+.|.+|||++|.||++.+||+||++||||+.+... ..+..+......     ...
T Consensus         2 ~~g~v~~~~~~~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (122)
T cd04666           2 QAGAIPYRETGGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCE   81 (122)
T ss_pred             EEEEEEEEEcCCceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEE
Confidence            5677776643  35899999877789999999999999999999999999999987655 455544332221     333


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +++|.+.. .+..  ......++.++.|++++++.++
T Consensus        82 ~~~f~~~~-~~~~--~~~~~~e~~~~~W~~~~ea~~~  115 (122)
T cd04666          82 VAVFPLEV-TEEL--DEWPEMHQRKRKWFSPEEAALL  115 (122)
T ss_pred             EEEEEEEE-eccc--cCCcccCceEEEEecHHHHHHh
Confidence            44454443 3221  1223456789999999999763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.5e-17  Score=128.08  Aligned_cols=105  Identities=17%  Similarity=0.233  Sum_probs=72.2

Q ss_pred             EEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee--e--ee-CeEEEEEE
Q 026059           32 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--K--IF-GQQRVRLY  106 (244)
Q Consensus        32 v~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~--~--~~-~~~~~~~~  106 (244)
                      ++++|.++  +++||+++...+.|.+|||++|.||++.+||+||++||||+++.....+..+..  .  .. .+...++|
T Consensus         4 ~~~vi~~~--~~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f   81 (125)
T cd04689           4 ARAIVRAG--NKVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIF   81 (125)
T ss_pred             EEEEEEeC--CEEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEE
Confidence            35555554  389999987778999999999999999999999999999998875444332211  1  11 12334555


Q ss_pred             EEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .+.............++|+.++.|++++++..
T Consensus        82 ~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  113 (125)
T cd04689          82 AVESSWLASDGPPQADEDHLSFSWVPVSDLSL  113 (125)
T ss_pred             EEEcccccccCCccCccceEEEEEccHHHccc
Confidence            55443322111233456789999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=9.2e-18  Score=130.43  Aligned_cols=110  Identities=19%  Similarity=0.148  Sum_probs=79.0

Q ss_pred             hhcCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeee
Q 026059           22 FTSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF   98 (244)
Q Consensus        22 ~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~   98 (244)
                      +..|.+...++++++.++  +++||++|..   .+.|.+|||++|.||++++||.||++||||+.+.....+..+ ....
T Consensus         6 ~~~~~~~~~~v~~ii~~~--~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~-~~~~   82 (130)
T cd04511           6 YIHYQNPKIIVGCVPEWE--GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVY-SVPH   82 (130)
T ss_pred             cccCCCCcEEEEEEEecC--CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEE-ecCC
Confidence            345666666667777776  3899999864   689999999999999999999999999999987643323222 2222


Q ss_pred             CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .....++|.+......    ...+.|..+..|+++++|+.
T Consensus        83 ~~~~~~~f~~~~~~~~----~~~~~e~~~~~~~~~~~l~~  118 (130)
T cd04511          83 ISQVYMFYRARLLDLD----FAPGPESLEVRLFTEEEIPW  118 (130)
T ss_pred             ceEEEEEEEEEEcCCc----ccCCcchhceEEECHHHCCc
Confidence            3344556656554332    22356788999999999973

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.5e-17  Score=128.83  Aligned_cols=104  Identities=21%  Similarity=0.401  Sum_probs=74.7

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee----eeeCeEEE
Q 026059           31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE----KIFGQQRV  103 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~----~~~~~~~~  103 (244)
                      +|+++|++.++ ++||++|..   .+.|.+|||+++.||++.+||.||++||||+++..+..+..+..    .....+.+
T Consensus         3 av~~~i~~~~~-~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T cd04681           3 AVGVLILNEDG-ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL   81 (130)
T ss_pred             eEEEEEEcCCC-cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEE
Confidence            46777888764 999999875   58999999999999999999999999999999876544433211    11222334


Q ss_pred             EEEEEEeecCCCCcCCCCCCceeeEEEEcccccc
Q 026059          104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQ  137 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~  137 (244)
                      .+|+........  ...+.+|+.++.|+++++|.
T Consensus        82 ~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          82 DLFFVCQVDDKP--IVKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             EEEEEEEeCCCC--CcCChHHhheeEEecHHHCC
Confidence            444444444321  22345789999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.7e-17  Score=126.68  Aligned_cols=102  Identities=25%  Similarity=0.322  Sum_probs=72.4

Q ss_pred             EEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee-------eCeE
Q 026059           32 TGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-------FGQQ  101 (244)
Q Consensus        32 v~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~-------~~~~  101 (244)
                      +++++.++  +++||++|.+   .+.|.+|||+++.||++++||.||++||||+++.....+..+....       ..+.
T Consensus         3 v~~ii~~~--~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (122)
T cd04673           3 VGAVVFRG--GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHY   80 (122)
T ss_pred             EEEEEEEC--CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEE
Confidence            45666665  3899999876   6889999999999999999999999999999976544333221111       1123


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .++.|.+....+.    ....+|+.++.|++++++.++
T Consensus        81 ~~~~~~~~~~~~~----~~~~~E~~~~~w~~~~el~~~  114 (122)
T cd04673          81 VLIDFLCRYLGGE----PVAGDDALDARWVPLDELAAL  114 (122)
T ss_pred             EEEEEEEEeCCCc----ccCCcccceeEEECHHHHhhC
Confidence            3445555443332    234578899999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.1e-17  Score=128.06  Aligned_cols=109  Identities=28%  Similarity=0.330  Sum_probs=76.6

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee-----ee-eee--C
Q 026059           28 RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-----IE-KIF--G   99 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~-----~~-~~~--~   99 (244)
                      ....+++++++.+ +++||++|...+.|.+|||+++.||++.+||.||++||||+.+.....+..+     +. ...  .
T Consensus         6 ~~~~~~~~v~~~~-~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~~~   84 (132)
T cd04677           6 ILVGAGVILLNEQ-GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNGDDE   84 (132)
T ss_pred             cccceEEEEEeCC-CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCCCcE
Confidence            3445566777776 4999999887789999999999999999999999999999998754333221     11 111  1


Q ss_pred             eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          100 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .....+|++...... . .....+|+.++.|++++++..+
T Consensus        85 ~~~~~~~~~~~~~~~-~-~~~~~~e~~~~~W~~~~e~~~~  122 (132)
T cd04677          85 QYIVTLYYVTKVFGG-K-LVPDGDETLELKFFSLDELPEL  122 (132)
T ss_pred             EEEEEEEEEEeccCC-c-ccCCCCceeeEEEEChhHCccc
Confidence            234445555443322 1 1234678899999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=3.9e-17  Score=125.98  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=75.1

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee----ee-eCeEEE
Q 026059           29 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE----KI-FGQQRV  103 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~----~~-~~~~~~  103 (244)
                      +.++++|+ +++  +|||+++...+.|.+|||+++.||++.+||.||++||||+.+.....+..+..    .. ..+...
T Consensus         2 ~~v~~vi~-~~~--~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
T cd04688           2 VRAAAIII-HNG--KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIE   78 (126)
T ss_pred             eEEEEEEE-ECC--EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEE
Confidence            34544444 443  89999987778999999999999999999999999999998876544433211    11 123445


Q ss_pred             EEEEEEeecCCCCc----CCCCCCceeeEEEEccccccCC
Q 026059          104 RLYIIAGVRDDTAF----APQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~----~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ++|.+....+....    ...++.|+.++.|++++++..+
T Consensus        79 ~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  118 (126)
T cd04688          79 FYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI  118 (126)
T ss_pred             EEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence            66666554433211    0124578999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=4.2e-17  Score=125.22  Aligned_cols=107  Identities=26%  Similarity=0.383  Sum_probs=73.7

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce-----ee-eeeeC--eE
Q 026059           30 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE-----FI-EKIFG--QQ  101 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~-----~~-~~~~~--~~  101 (244)
                      +.+++++.+++ +++||++|...+.|.+|||+++.||++++||.||++||||+.+.....+..     +. ....+  .+
T Consensus         3 ~~v~~ii~~~~-~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04676           3 PGVTAVVRDDE-GRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGDVRQ   81 (129)
T ss_pred             ceEEEEEECCC-CeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCCcEE
Confidence            45677777776 499999998889999999999999999999999999999998764322110     11 11111  23


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+.+++........  ......|..++.|++++++..+
T Consensus        82 ~~~~~~~~~~~~~~--~~~~~~e~~~~~w~~~~el~~~  117 (129)
T cd04676          82 YLDITFRCRVVGGE--LRVGDDESLDVAWFDPDGLPPL  117 (129)
T ss_pred             EEEEEEEEEeeCCe--ecCCCCceeEEEEEChhhCccc
Confidence            34433333332221  1124577889999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=4e-17  Score=125.52  Aligned_cols=107  Identities=26%  Similarity=0.353  Sum_probs=71.4

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceee--eee---eCeEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI--EKI---FGQQR  102 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~--~~~---~~~~~  102 (244)
                      ++.| +++|+++  +++||+++...+.|.+|||+++.||++.+||.||++||||+.+.....+..+.  ...   ...+.
T Consensus         2 ~~~v-~~~i~~~--~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (123)
T cd04672           2 KVDV-RAAIFKD--GKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQV   78 (123)
T ss_pred             cceE-EEEEEEC--CEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceEE
Confidence            4455 4455555  39999999888999999999999999999999999999999874322111111  111   11223


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  140 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  140 (244)
                      +.+++.+.....   .....+|..++.|++++++.++.
T Consensus        79 ~~~~f~~~~~~~---~~~~~~E~~~~~W~~~~el~~l~  113 (123)
T cd04672          79 YKLFFLCEILGG---EFKPNIETSEVGFFALDDLPPLS  113 (123)
T ss_pred             EEEEEEEEecCC---cccCCCceeeeEEECHHHCcccc
Confidence            333333333322   12234788999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.73  E-value=4.5e-17  Score=130.77  Aligned_cols=108  Identities=20%  Similarity=0.365  Sum_probs=76.1

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee---e-----------
Q 026059           30 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF---I-----------   94 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~---~-----------   94 (244)
                      .++++++++.++ ++||+||.. ++.|++|||+++.||++++||.||++||||+.+..+..+..+   .           
T Consensus         9 ~~v~~~i~~~~g-~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~~   87 (156)
T PRK00714          9 PNVGIILLNRQG-QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRLVRR   87 (156)
T ss_pred             CeEEEEEEecCC-EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHHhhc
Confidence            356777888764 999999977 589999999999999999999999999999988644333221   0           


Q ss_pred             -eeeeCeEEEEEEEEEeecCCCCc--CCCCCCceeeEEEEccccccC
Q 026059           95 -EKIFGQQRVRLYIIAGVRDDTAF--APQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        95 -~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~  138 (244)
                       ...+.....++|.+.........  .+.+++|+.+++|++++++++
T Consensus        88 ~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~  134 (156)
T PRK00714         88 SKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLD  134 (156)
T ss_pred             cCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHH
Confidence             00111223456665553322211  122356999999999999987

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=2.5e-17  Score=126.51  Aligned_cols=105  Identities=16%  Similarity=0.259  Sum_probs=75.3

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC------CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCc--ccccceeeeeeeCeE
Q 026059           30 PVTGAIILDETYERCILVKGWK------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKIFGQQ  101 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~------~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~--l~~~~~~~~~~~~~~  101 (244)
                      .|+++++.++  +++||++|..      .|.|.+|||+++.||++++||.||++||||+.+..  +.....+.. .....
T Consensus         2 ~v~~~~~~~~--g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~-~~~~~   78 (122)
T cd04682           2 GVALALLIGD--GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPS-ASPPG   78 (122)
T ss_pred             ceEEEEEEcC--CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEeccc-CCCCc
Confidence            3555666655  4999999864      48999999999999999999999999999999863  222222221 12344


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ..++|.+......  ......+|+.++.|++++++...
T Consensus        79 ~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~~  114 (122)
T cd04682          79 TEHVFVVPLTARE--DAILFGDEGQALRLMTVEEFLAH  114 (122)
T ss_pred             eEEEEEEEEecCC--CccccCchhheeecccHHHHhhc
Confidence            5666766655432  12345688999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.73  E-value=3.8e-17  Score=127.66  Aligned_cols=103  Identities=25%  Similarity=0.373  Sum_probs=74.3

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee--e-eCeEEEE
Q 026059           31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK--I-FGQQRVR  104 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~--~-~~~~~~~  104 (244)
                      ++.+++.+++  ++||++|..   .+.|.+|||+++.||++.+||+||++||||+.+..+..+..+...  . ......+
T Consensus         3 ~~~~~i~~~~--~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   80 (137)
T cd03427           3 TTLCFIKDPD--KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF   80 (137)
T ss_pred             EEEEEEEECC--EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEE
Confidence            5566677763  899999887   689999999999999999999999999999988865444433221  1 1334455


Q ss_pred             EEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          105 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +|.+....+.    +....|..++.|++++++..+
T Consensus        81 ~f~~~~~~~~----~~~~~e~~~~~W~~~~el~~~  111 (137)
T cd03427          81 VFLATEFEGE----PLKESEEGILDWFDIDDLPLL  111 (137)
T ss_pred             EEEECCcccc----cCCCCccccceEEcHhhcccc
Confidence            5555443332    222456678999999999863

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=2.8e-17  Score=125.09  Aligned_cols=101  Identities=28%  Similarity=0.380  Sum_probs=73.7

Q ss_pred             EEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCc--ccccceeeeee--e--CeEEEEE
Q 026059           32 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKI--F--GQQRVRL  105 (244)
Q Consensus        32 v~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~--l~~~~~~~~~~--~--~~~~~~~  105 (244)
                      +++++.+.++ ++||+++...+.|.+|||++++||++++||.||++||||+.+..  +..+..+....  .  .....++
T Consensus         3 ~~~~v~~~~~-~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (118)
T cd04690           3 AAALILVRDG-RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATV   81 (118)
T ss_pred             EEEEEEecCC-eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEE
Confidence            3455555553 99999988788999999999999999999999999999998876  65555443321  1  1234555


Q ss_pred             EEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          106 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      |.+....     .....+|+.++.|++++++..
T Consensus        82 f~~~~~~-----~~~~~~e~~~~~W~~~~e~~~  109 (118)
T cd04690          82 YVAELTG-----EPVPAAEIEEIRWVDYDDPAD  109 (118)
T ss_pred             EEEcccC-----CcCCCchhhccEEecHHHccc
Confidence            5554322     123357889999999999855

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.72  E-value=1.6e-17  Score=129.45  Aligned_cols=104  Identities=18%  Similarity=0.231  Sum_probs=76.3

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYII  108 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~  108 (244)
                      ++.+.+.+++ +++||++|..  .+.|.+|||+++.||++.+||.||++||||+.+..+..+..... ...+..+.+|.+
T Consensus         2 ~v~i~l~~~~-~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~-~~~~~~~~~f~~   79 (131)
T cd03429           2 AVIVLVIDGG-DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPW-PFPSSLMLGFTA   79 (131)
T ss_pred             eEEEEEEeCC-CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCC-CCCceEEEEEEE
Confidence            4556666664 4999999886  78999999999999999999999999999999886655543211 122344555655


Q ss_pred             EeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          109 AGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ....+.   ....++|+.++.|++++++.+.
T Consensus        80 ~~~~~~---~~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          80 EADSGE---IVVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             EEcCCc---ccCCchhhhccEeecHHHHhhc
Confidence            543221   2234678899999999998874

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=6.6e-17  Score=122.29  Aligned_cols=99  Identities=30%  Similarity=0.433  Sum_probs=71.3

Q ss_pred             EEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEEEeec
Q 026059           33 GAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVR  112 (244)
Q Consensus        33 ~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~  112 (244)
                      ++|+.+ + +++||++|. .+.|.+|||+++.||++.+||.||++||||+.+..+..+..+.   ......++|.+....
T Consensus         4 ~~i~~~-~-~~vLlv~r~-~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~---~~~~~~~~f~~~~~~   77 (112)
T cd04667           4 TVICRR-G-GRVLLVRKS-GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVD---GGSTRHHVFVASVPP   77 (112)
T ss_pred             EEEEec-C-CEEEEEEcC-CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEe---CCCEEEEEEEEEcCC
Confidence            444444 3 499999986 4899999999999999999999999999999987655444332   123344555554332


Q ss_pred             CCCCcCCCCCCceeeEEEEccccccCCC
Q 026059          113 DDTAFAPQTKKEISEIAWQRLDELQPAS  140 (244)
Q Consensus       113 ~~~~~~~~~~~E~~~~~W~~~~el~~~~  140 (244)
                      ..   ......|+.++.|++++++.+++
T Consensus        78 ~~---~~~~~~e~~~~~W~~~~el~~~~  102 (112)
T cd04667          78 SA---QPKPSNEIADCRWLSLDALGDLN  102 (112)
T ss_pred             cC---CCCCchheeEEEEecHHHhhhcc
Confidence            21   22345788999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.71  E-value=7.1e-17  Score=133.10  Aligned_cols=118  Identities=18%  Similarity=0.271  Sum_probs=86.4

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRL  105 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~~~  105 (244)
                      +|+++..+++ +++||+++.+    ...|+||||.+|+||++++||.||++||||+.+..+..+..+.. +......+++
T Consensus        49 ~v~v~~~~~~-~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~  127 (185)
T PRK11762         49 AVMIVPILDD-DTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNI  127 (185)
T ss_pred             EEEEEEEeCC-CEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEE
Confidence            4455545554 4899999876    56799999999999999999999999999999988777765442 4455677888


Q ss_pred             EEEEeecCCCCcCCCCCCceeeEEEEccccccCC--Ccccc-ccccchh
Q 026059          106 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGL  151 (244)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~--~~~~~-~~~~~a~  151 (244)
                      |++.......  ...++.|..++.|++++++.++  ++++. ++++.++
T Consensus       128 f~a~~~~~~~--~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d~~ti~al  174 (185)
T PRK11762        128 VLAEDLYPER--LEGDEPEPLEVVRWPLADLDELLARPDFSEARSVAAL  174 (185)
T ss_pred             EEEEcccccc--CCCCCCceeEEEEEcHHHHHHHHHcCCCCcHHHHHHH
Confidence            8876554321  1234567789999999999873  34444 5555443

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.71  E-value=6.5e-17  Score=125.10  Aligned_cols=106  Identities=25%  Similarity=0.368  Sum_probs=75.3

Q ss_pred             cEEEEEEEeCCCC--EEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee---ee--eCeEE
Q 026059           30 PVTGAIILDETYE--RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE---KI--FGQQR  102 (244)
Q Consensus        30 ~vv~~ii~~~~~~--kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~---~~--~~~~~  102 (244)
                      ..+++|+++.+.+  ++||++++. +.|.+|||+++.|||+.+||.||++||||+.+..+..+..+..   ..  .....
T Consensus         3 ~~~g~vi~~~~~~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T cd03428           3 RSAGAIIYRRLNNEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGKLKT   81 (130)
T ss_pred             eEEEEEEEEecCCCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccCcceE
Confidence            4567777665532  699999887 9999999999999999999999999999999886554322211   11  12344


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +++|.+...... .  +...+|..++.|++++++.++
T Consensus        82 ~~~f~~~~~~~~-~--~~~~~E~~~~~W~~~~e~~~~  115 (130)
T cd03428          82 VTYFLAELRPDV-E--VKLSEEHQDYRWLPYEEALKL  115 (130)
T ss_pred             EEEEEEEeCCCC-c--cccccceeeEEeecHHHHHHH
Confidence            556655543222 1  222378999999999999873

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=3.4e-17  Score=126.55  Aligned_cols=104  Identities=21%  Similarity=0.264  Sum_probs=71.6

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCCHHHHHHHHHHhhcCCCCCc--ccccceeeeeeeCeEE
Q 026059           31 VTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKIFGQQR  102 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs~~eaa~REl~EEtGl~v~~--l~~~~~~~~~~~~~~~  102 (244)
                      +|.+++++.+ ++|||++|..     +|.|++| ||+++.||++ +||+||++||||+.+..  +..+..+.....+...
T Consensus         2 ~v~v~~~~~~-g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   79 (127)
T cd04693           2 VVHVCIFNSK-GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEGFDD   79 (127)
T ss_pred             eEEEEEEeCC-CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCCeEE
Confidence            4566777766 4999998875     4799998 8999999999 99999999999999763  3333333222112233


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +.+|.+......   ...+.+|+.++.|++++++.++
T Consensus        80 ~~~~~~~~~~~~---~~~~~~E~~~~~w~~~~el~~~  113 (127)
T cd04693          80 YYLFYADVEIGK---LILQKEEVDEVKFVSKDEIDGL  113 (127)
T ss_pred             EEEEEecCcccc---cccCHHHhhhEEEeCHHHHHHH
Confidence            334433322211   1223578899999999999873

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.71  E-value=1.3e-16  Score=125.66  Aligned_cols=106  Identities=17%  Similarity=0.269  Sum_probs=67.5

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc--ccc---cee--eeee
Q 026059           30 PVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNK---DEF--IEKI   97 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l--~~~---~~~--~~~~   97 (244)
                      .++++++.++  +++||+||..     +|.|++|||++|+|||+++||.||++||||+.+...  ...   ...  ....
T Consensus         5 ~~~~~ii~~~--~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   82 (141)
T PRK15472          5 TIVCPLIQND--GAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYA   82 (141)
T ss_pred             eEEEEEEecC--CEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEec
Confidence            3444555554  4999999865     489999999999999999999999999999986421  110   000  0011


Q ss_pred             --eCeEEEEEEEEEee-cCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           98 --FGQQRVRLYIIAGV-RDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        98 --~~~~~~~~~~~~~~-~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                        .......+|.+... ....  ....++|+.++.|+++++|.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~~~~w~~~~el~~l  125 (141)
T PRK15472         83 DGRKEEIYMIYLIFDCVSANR--DVKINEEFQDYAWVKPEDLVHY  125 (141)
T ss_pred             CCCceeEEEEEEEEEeecCCC--cccCChhhheEEEccHHHhccc
Confidence              11122223222111 1111  1223578999999999999885

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.71  E-value=1.5e-16  Score=130.64  Aligned_cols=129  Identities=17%  Similarity=0.240  Sum_probs=87.3

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC-----CCcE-EeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCe
Q 026059           28 RVPVTGAIILDETYERCILVKGWK-----GSSW-SFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQ  100 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w-~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~  100 (244)
                      .+.++.++|++.+ +++||++|..     +|.| .+|||++++||++.+||+||++||||+.+..+..+..+... ....
T Consensus        36 ~h~~~~v~v~~~~-g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~  114 (180)
T PRK15393         36 RHRATYIVVHDGM-GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCR  114 (180)
T ss_pred             ceEEEEEEEECCC-CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCce
Confidence            4566677788876 4999998875     3445 58999999999999999999999999987655444443221 2222


Q ss_pred             EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcCCC
Q 026059          101 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS  173 (244)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~~~  173 (244)
                      ...++|.+.. .+.   .....+|+.++.|++++++.++...+            ....+..+..|+.+....
T Consensus       115 ~~~~~f~~~~-~~~---~~~~~~E~~~~~W~~~~el~~~~~~~------------~~~~~~~l~~~l~~~~~~  171 (180)
T PRK15393        115 VWGALFSCVS-HGP---FALQEEEVSEVCWMTPEEITARCDEF------------TPDSLKALALWLTRNAKN  171 (180)
T ss_pred             EEEEEEEEEe-CCC---CCCChHHeeEEEECCHHHHhhhhhhc------------CccHHHHHHHHHHhhccc
Confidence            2334555433 222   22346789999999999998753221            123457777888776544

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=6.5e-17  Score=125.05  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=77.1

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeee-CeEEE
Q 026059           31 VTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF-GQQRV  103 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~-~~~~~  103 (244)
                      ++.+++++.++ ++||++|..     .|.|++ |||+++.||++++||+||++||||+.+..+..+..+..... .....
T Consensus         2 ~~~v~i~~~~~-~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~   80 (126)
T cd04697           2 ATYIFVFNSEG-KLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWG   80 (126)
T ss_pred             eEEEEEEcCCC-eEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEE
Confidence            45677888874 999998875     678999 69999999999999999999999999886666655443222 23334


Q ss_pred             EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ++|.+.. ...  . ....+|+.++.|++++++.++
T Consensus        81 ~~f~~~~-~~~--~-~~~~~E~~~~~w~~~~el~~~  112 (126)
T cd04697          81 KVFSCVY-DGP--L-KLQEEEVEEITWLSINEILQF  112 (126)
T ss_pred             EEEEEEE-CCC--C-CCCHhHhhheEEcCHHHHHHH
Confidence            5665543 222  1 234578899999999999873

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.70  E-value=1.2e-16  Score=123.26  Aligned_cols=108  Identities=30%  Similarity=0.415  Sum_probs=78.7

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCC-----CcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee--eC--
Q 026059           29 VPVTGAIILDETYERCILVKGWKG-----SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI--FG--   99 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~~-----~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~--~~--   99 (244)
                      ..+|++++++.++ ++||++|.+.     +.|.+|||+++.||++.+||+||+.||||+.+.............  ..  
T Consensus         2 ~~~v~~ii~~~~~-~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~   80 (134)
T PF00293_consen    2 RRAVGVIIFNEDG-KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPE   80 (134)
T ss_dssp             EEEEEEEEEETTT-EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESS
T ss_pred             CCEEEEEEEeCCc-EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCcc
Confidence            3567889999885 9999999983     799999999999999999999999999999985433332222211  11  


Q ss_pred             eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          100 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .....+|.+.......... ....|+.++.|++++++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~  118 (134)
T PF00293_consen   81 GEIVIFFIAELPSEQSEIQ-PQDEEISEVKWVPPDELLE  118 (134)
T ss_dssp             EEEEEEEEEEEEEEESECH-TTTTTEEEEEEEEHHHHHH
T ss_pred             cEEEEEEEEEEeCCccccC-CCCccEEEEEEEEHHHhhh
Confidence            2455556555444332222 2234999999999999987

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.70  E-value=1.1e-16  Score=133.49  Aligned_cols=127  Identities=13%  Similarity=0.070  Sum_probs=93.8

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCC---------CcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceee-eee
Q 026059           28 RVPVTGAIILDETYERCILVKGWKG---------SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI-EKI   97 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~~---------~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~-~~~   97 (244)
                      +.++|++|.++++++++||+++.+.         -.|++|+|.+|+||++++||.||+.||||+.+..+..+..++ .++
T Consensus        48 ~~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg  127 (202)
T PRK10729         48 RGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPG  127 (202)
T ss_pred             cCCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCC
Confidence            4456677777764459999999882         369999999999999999999999999999998777666543 355


Q ss_pred             eCeEEEEEEEEEeec-C-CCCcCCCCCCceeeEEEEccccccC--CCcccc-ccccchhhhh
Q 026059           98 FGQQRVRLYIIAGVR-D-DTAFAPQTKKEISEIAWQRLDELQP--ASDDVI-SHGVTGLKLY  154 (244)
Q Consensus        98 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~E~~~~~W~~~~el~~--~~~~~~-~~~~~a~~~~  154 (244)
                      ..+..+++|++.... . .......+..|..++.|++++++.+  .++++. ++++.|+.++
T Consensus       128 ~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d~~ti~al~~~  189 (202)
T PRK10729        128 GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWL  189 (202)
T ss_pred             cCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            677888999886422 1 1111223457778899999999988  456666 6666665444

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.70  E-value=1.5e-16  Score=123.91  Aligned_cols=104  Identities=19%  Similarity=0.283  Sum_probs=72.0

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEE
Q 026059           29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRV  103 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~  103 (244)
                      +.++++|+.++  +++||+||..    +|.|+||||+++.||++.+||.||+.||||+.+.....+..+.+. ......+
T Consensus         4 ~~~~~~ii~~~--~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T PRK10546          4 IDVVAAIIERD--GKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHL   81 (135)
T ss_pred             EEEEEEEEecC--CEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEE
Confidence            55666666544  4899999865    589999999999999999999999999999997643323222221 1222334


Q ss_pred             EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ++|.+....+.    +. ..|..++.|++++++..+
T Consensus        82 ~~~~~~~~~~~----~~-~~e~~~~~W~~~~el~~~  112 (135)
T PRK10546         82 HAWHVPDFHGE----LQ-AHEHQALVWCTPEEALRY  112 (135)
T ss_pred             EEEEEEEecCc----cc-ccccceeEEcCHHHcccC
Confidence            55555443322    11 346678999999999874

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.5e-16  Score=123.95  Aligned_cols=107  Identities=22%  Similarity=0.239  Sum_probs=69.8

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC-cccccceeee--e---e---eCeE
Q 026059           31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-KLLNKDEFIE--K---I---FGQQ  101 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~-~l~~~~~~~~--~---~---~~~~  101 (244)
                      .+++||.+++  +|||+++.+.+.|.+|||++|.||++.+||.||++||||+.+. ....+..+..  .   .   ..+.
T Consensus         2 ~~~~ii~~~~--~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~   79 (131)
T cd04686           2 AVRAIILQGD--KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHM   79 (131)
T ss_pred             cEEEEEEECC--EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeEE
Confidence            3567777764  8999998877899999999999999999999999999999874 3323322211  0   1   1122


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCce---eeEEEEccccccCCC
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEI---SEIAWQRLDELQPAS  140 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~---~~~~W~~~~el~~~~  140 (244)
                      ..++|.+........ ...+..|.   ..+.|++++++...+
T Consensus        80 ~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~W~~~~ea~~~~  120 (131)
T cd04686          80 ISYYYLCEVDAELGA-QQLEDYEAELGMKPIWINIHEAIEHN  120 (131)
T ss_pred             EEEEEEEEEcCCcCC-cccchhhHhcCCCcEEecHHHHHHhh
Confidence            334555544332211 11222222   358999999998744

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.70  E-value=7.6e-17  Score=129.49  Aligned_cols=107  Identities=19%  Similarity=0.144  Sum_probs=74.7

Q ss_pred             EEEEEEEeCC-CCEEEEEEeeC-----CCcEEeCeeecCCC-CCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEE
Q 026059           31 VTGAIILDET-YERCILVKGWK-----GSSWSFPRGKKNKD-EEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  102 (244)
Q Consensus        31 vv~~ii~~~~-~~kvLLvkr~~-----~~~w~~PgG~ve~g-Es~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~  102 (244)
                      ++.+++.+.+ +++|||+||..     +|.|++|||++|.| |++.+||+||++||||+.+..+..+..+.. .......
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~   83 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV   83 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence            4455566544 35999999876     58999999999999 999999999999999999886544433211 1122334


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +++|.+..... ... ..+++|+.++.|++++++.+.
T Consensus        84 v~~~~~~~~~~-~~~-~~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          84 VTPVVGLVPPP-LPL-VLNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             EEEEEEEECCC-CCC-CCCHHHhheeEEEcHHHHhCc
Confidence            45554443222 111 233568999999999999874

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=3.6e-16  Score=121.58  Aligned_cols=95  Identities=23%  Similarity=0.352  Sum_probs=67.6

Q ss_pred             CEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccc---ceeeeeeeCe-EEEEEEEEEeecCCC
Q 026059           42 ERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK---DEFIEKIFGQ-QRVRLYIIAGVRDDT  115 (244)
Q Consensus        42 ~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~  115 (244)
                      +++||++|..  +|.|.+|||+++.|||+.+||+||++||||+++..+...   ..++...... ....+|.+...... 
T Consensus        14 ~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-   92 (131)
T cd04695          14 TKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVPPHQ-   92 (131)
T ss_pred             CEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEecCCC-
Confidence            5999999988  899999999999999999999999999999998754321   1222211111 22334544432222 


Q ss_pred             CcCCCCCCceeeEEEEccccccCC
Q 026059          116 AFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       116 ~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                        .....+|+.++.|++++++.++
T Consensus        93 --~~~~~~E~~~~~W~~~~e~~~~  114 (131)
T cd04695          93 --EVVLNHEHTEYRWCSFAEALEL  114 (131)
T ss_pred             --ccccCchhcccEecCHHHHHHh
Confidence              1223478999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=9.7e-17  Score=124.22  Aligned_cols=104  Identities=20%  Similarity=0.174  Sum_probs=74.1

Q ss_pred             EEEEEEEeC--CCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee-----eee-ee-C
Q 026059           31 VTGAIILDE--TYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-----IEK-IF-G   99 (244)
Q Consensus        31 vv~~ii~~~--~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~-----~~~-~~-~   99 (244)
                      ++.+++++.  + +++||++|.+  ++.|.+|||+++.||++.+||.||++||||+.+..+..+...     ... .. .
T Consensus         3 ~~~v~~~~~~~~-~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04664           3 SVLVVPYRLTGE-GRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNGR   81 (129)
T ss_pred             EEEEEEEEeCCC-CEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCce
Confidence            456777776  5 4999999987  799999999999999999999999999999987543222211     111 11 1


Q ss_pred             eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          100 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ....++|.+......   ....++|+.++.|++++++.+
T Consensus        82 ~~~~~~f~~~~~~~~---~~~~~~E~~~~~W~~~~e~~~  117 (129)
T cd04664          82 VWTEHPFAFHLPSDA---VVTLDWEHDAFEWVPPEEAAA  117 (129)
T ss_pred             EEEEeEEEEEcCCCC---cccCCccccccEecCHHHHHH
Confidence            234455655543322   123357889999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=1.8e-16  Score=121.98  Aligned_cols=105  Identities=27%  Similarity=0.418  Sum_probs=72.3

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc-eeeeeeeC-eEE
Q 026059           30 PVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD-EFIEKIFG-QQR  102 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~-~~~~~~~~-~~~  102 (244)
                      .+++++|.+++ +++||+||..     +|.|++|||+++.||++.+||.||++||||+.+.....+. .+...... .+.
T Consensus         2 ~~v~~vv~~~~-~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   80 (129)
T cd04699           2 VAVAALIVKDV-GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNV   80 (129)
T ss_pred             ceEEEEEECCC-CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEE
Confidence            35567777765 4899999875     5789999999999999999999999999999887544322 22222221 233


Q ss_pred             E-EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 V-RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~-~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      + .+|.+.....    .....+|..++.|++++++..+
T Consensus        81 ~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~el~~~  114 (129)
T cd04699          81 IYLVFVCEALSG----AVKLSDEHEEYAWVTLEELAIL  114 (129)
T ss_pred             EEEEEEeeecCC----cccCChhheEEEEecHHHhhhh
Confidence            3 3343333222    1223568889999999998653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.69  E-value=1.3e-16  Score=131.46  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=90.9

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC---------CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-ee
Q 026059           28 RVPVTGAIILDETYERCILVKGWK---------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KI   97 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~---------~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~   97 (244)
                      +-+++++++++.+.+++||+++.+         ...|++|||++|.||++++||+||++||||+.+..+..+..+.. +.
T Consensus        43 ~~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g  122 (185)
T TIGR00052        43 RGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPG  122 (185)
T ss_pred             cCCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCC
Confidence            445667777766546999999876         24789999999999999999999999999999987776665433 44


Q ss_pred             eCeEEEEEEEEEeecCCC-CcCCCCCCceeeEEEEccccccCC--Ccccc-ccccchhhhh
Q 026059           98 FGQQRVRLYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY  154 (244)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~--~~~~~-~~~~~a~~~~  154 (244)
                      .....+++|.+....... .....+++|..+..|++++++.++  ++++. ++++.++.++
T Consensus       123 ~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d~~t~~al~~~  183 (185)
T TIGR00052       123 GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDNGKTVILLQWL  183 (185)
T ss_pred             CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            556778888776443211 111223456678999999999873  55555 6665554433

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.68  E-value=3e-16  Score=122.49  Aligned_cols=93  Identities=17%  Similarity=0.238  Sum_probs=67.3

Q ss_pred             CEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc-c---ccceeee-ee-------eCeEEEEEEE
Q 026059           42 ERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-L---NKDEFIE-KI-------FGQQRVRLYI  107 (244)
Q Consensus        42 ~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l-~---~~~~~~~-~~-------~~~~~~~~~~  107 (244)
                      +++||+|+..  .+.|.||||++|+|||+.+||+||++||||+.+... .   .+..+.. ..       .....+++|.
T Consensus        13 ~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   92 (132)
T cd04661          13 TLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFK   92 (132)
T ss_pred             cEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEEE
Confidence            4899999875  479999999999999999999999999999987631 1   1111111 00       0113456676


Q ss_pred             EEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          108 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       108 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +....+.    +....|+.+++|+++++|.+
T Consensus        93 ~~~~~g~----~~~~~e~~~~~W~~~~el~~  119 (132)
T cd04661          93 ARYMSGQ----FELSQNQVDFKWLAKEELQK  119 (132)
T ss_pred             EEEecCc----cccCCCcceeEecCHHHHHh
Confidence            6665553    22347889999999999987

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.68  E-value=1e-15  Score=117.67  Aligned_cols=105  Identities=20%  Similarity=0.310  Sum_probs=72.7

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEE
Q 026059           29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRV  103 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~  103 (244)
                      +.++++||.+++ +++||+||..    +|.|+||||++++||++.+||.||+.||||+.+.....+....+. ......+
T Consensus         4 ~~~~~~ii~~~~-~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~   82 (129)
T PRK10776          4 LQIAVGIIRNPN-NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITL   82 (129)
T ss_pred             eEEEEEEEECCC-CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEE
Confidence            455566677765 4999999876    589999999999999999999999999999987643333222211 1222334


Q ss_pred             EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+|.+....+.    + ...|..++.|++++++...
T Consensus        83 ~~~~~~~~~~~----~-~~~e~~~~~W~~~~~l~~~  113 (129)
T PRK10776         83 WFWLVESWEGE----P-WGKEGQPGRWVSQVALNAD  113 (129)
T ss_pred             EEEEEEEECCc----c-CCccCCccEEecHHHCccC
Confidence            45544433221    1 1346678899999999873

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.67  E-value=5.8e-16  Score=128.13  Aligned_cols=127  Identities=14%  Similarity=0.169  Sum_probs=93.8

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCCC----------cEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee-eee
Q 026059           28 RVPVTGAIILDETYERCILVKGWKGS----------SWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-IEK   96 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~~~----------~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~-~~~   96 (244)
                      +-++|++++++.+.++++|+++.+.+          .|++|+|.+|.| ++++||+||+.||||+.+..+..+..+ ..+
T Consensus        44 ~~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~sp  122 (191)
T PRK15009         44 RGNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSP  122 (191)
T ss_pred             ECCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCC
Confidence            34566777777654699999998833          489999999975 699999999999999999888777664 445


Q ss_pred             eeCeEEEEEEEEEeecCC-CCcCCCCCCceeeEEEEccccccC--CCcccc-ccccchhhhhh
Q 026059           97 IFGQQRVRLYIIAGVRDD-TAFAPQTKKEISEIAWQRLDELQP--ASDDVI-SHGVTGLKLYM  155 (244)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~--~~~~~~-~~~~~a~~~~~  155 (244)
                      +..+..+++|++...... ......+++|..++.|+|++++.+  .++++. +++++++.+++
T Consensus       123 G~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~da~ti~al~~~~  185 (191)
T PRK15009        123 GGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQ  185 (191)
T ss_pred             cccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            677888999988753221 111123467888999999999988  356666 66666554443

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.66  E-value=6.5e-16  Score=125.04  Aligned_cols=105  Identities=16%  Similarity=0.195  Sum_probs=75.6

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCCHHHHHHHHHHhhcCCCCCccccc-ceeee--ee--
Q 026059           29 VPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLNK-DEFIE--KI--   97 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~-~~~~~--~~--   97 (244)
                      +.+++++|++++ +++||+||..     +|.|++| ||+++.||++++||+||++||||+.+..+..+ ..+..  ..  
T Consensus        30 ~~~v~v~i~~~~-~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  108 (165)
T cd02885          30 HRAFSVFLFNSK-GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDG  108 (165)
T ss_pred             eeEEEEEEEcCC-CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCC
Confidence            667778888877 4999999875     6889996 89999999999999999999999998754333 22211  11  


Q ss_pred             --eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           98 --FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        98 --~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                        ..+....+|.+.... .  . ..+.+|+.++.|++++++.+
T Consensus       109 ~~~~~~i~~~f~~~~~~-~--~-~~~~~Ev~~~~w~~~~el~~  147 (165)
T cd02885         109 GLVEHEIDHVFFARADV-T--L-IPNPDEVSEYRWVSLEDLKE  147 (165)
T ss_pred             CceeeEEEEEEEEEeCC-C--C-CCCccceeEEEEECHHHHHH
Confidence              112234555554322 2  1 22467899999999999987

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=5.7e-16  Score=122.47  Aligned_cols=108  Identities=22%  Similarity=0.277  Sum_probs=74.0

Q ss_pred             cEEEEEEEeCCC--CEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCC--cccccceeeeee--
Q 026059           30 PVTGAIILDETY--ERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIEKI--   97 (244)
Q Consensus        30 ~vv~~ii~~~~~--~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~--~l~~~~~~~~~~--   97 (244)
                      .++.++|++.++  +++|+++|..     +|.|++ |||+++.||++++||+||++||||+.+.  .+..+..+....  
T Consensus         3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~   82 (144)
T cd04692           3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDH   82 (144)
T ss_pred             eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccc
Confidence            355677777651  4999999876     579999 5999999999999999999999999874  343343322211  


Q ss_pred             ----eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           98 ----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        98 ----~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                          ......++|.+......... ...++|+.++.|++++++..
T Consensus        83 ~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~E~~~~~W~~~~el~~  126 (144)
T cd04692          83 IGKLIDREFHHVYLYELKVPLEEF-TLQKEEVAGVVLIPLDEFAE  126 (144)
T ss_pred             cCCCccceEEEEEEEeccCChhhc-CCChhHhheEEEECHHHHHH
Confidence                11234456655543311111 22457899999999999976

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.65  E-value=1.8e-15  Score=115.07  Aligned_cols=105  Identities=24%  Similarity=0.397  Sum_probs=75.9

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEE
Q 026059           29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRV  103 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~  103 (244)
                      +.++.+++.+++ +++||++|.+    .|.|.||||+++.+|++++||.||+.||||+.+.....+..+... ......+
T Consensus         1 ~~~~~~~i~~~~-~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~   79 (124)
T cd03425           1 IEVVAAIIIDDD-GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTL   79 (124)
T ss_pred             CeEEEEEEECCC-CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEE
Confidence            456677777775 4999999875    689999999999999999999999999999987754444332221 1233445


Q ss_pred             EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+|.+....+.    . ...|..++.|++++++...
T Consensus        80 ~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  110 (124)
T cd03425          80 HVFLVELWSGE----P-QLLEHQELRWVPPEELDDL  110 (124)
T ss_pred             EEEEEeeeCCC----c-ccccCceEEEeeHHHcccC
Confidence            66655543322    1 1456788999999999873

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>TIGR00586 mutt mutator mutT protein

Probab=99.64  E-value=4.1e-15  Score=114.51  Aligned_cols=105  Identities=19%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEE
Q 026059           29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV  103 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~  103 (244)
                      ..++++|+.+++ +++||++|..    +|.|+||||+++.||++.+|+.||+.||||+.+.....+....+ .......+
T Consensus         4 ~~~~~~ii~~~~-~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~   82 (128)
T TIGR00586         4 QQIAVGIIRNEN-GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLW   82 (128)
T ss_pred             EEEEEEEEECCC-CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEE
Confidence            344555666665 3899999876    68999999999999999999999999999998764333322222 11222334


Q ss_pred             EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ++|.+....+.    +. ..+..++.|++++++.+.
T Consensus        83 ~~~~~~~~~~~----~~-~~~~~~~~W~~~~~l~~~  113 (128)
T TIGR00586        83 FWLLERWEGGP----PG-KEGQPEEWWVLVGLLADD  113 (128)
T ss_pred             EEEEEEEcCCC----cC-cccccccEEeCHHHCCcc
Confidence            44544432221    11 345567899999999874

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.63  E-value=4.8e-15  Score=133.04  Aligned_cols=112  Identities=19%  Similarity=0.318  Sum_probs=75.9

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc------eeee
Q 026059           25 YKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD------EFIE   95 (244)
Q Consensus        25 y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~------~~~~   95 (244)
                      |.+...++++||..++  +|||++|..   .|.|.+|||++|.||++++||+||++||||+++.......      .+..
T Consensus       199 ~~~~~vtv~avv~~~g--~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~  276 (340)
T PRK05379        199 YPPTFVTVDAVVVQSG--HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH  276 (340)
T ss_pred             CCCcceEEEEEEEECC--EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence            4444455566666653  899999876   6899999999999999999999999999999876322111      1111


Q ss_pred             ee---eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           96 KI---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        96 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +.   .+....++|.+....+. ......++|..++.|++++++..+
T Consensus       277 p~r~~~~~~i~~~f~~~~~~~~-~~~~~~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        277 PGRSLRGRTITHAFLFEFPAGE-LPRVKGGDDADKARWVPLAELLAM  322 (340)
T ss_pred             CCCCCCCcEEEEEEEEEecCCc-cCccCCCCceeeEEEEEHHHhhhh
Confidence            11   12334555655443222 122234678899999999999763

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.62  E-value=3.6e-15  Score=122.80  Aligned_cols=108  Identities=14%  Similarity=0.218  Sum_probs=75.4

Q ss_pred             cccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCCHHHHHHHHHHhhcCCCCCccccc-ceee--ee
Q 026059           26 KVRVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLNK-DEFI--EK   96 (244)
Q Consensus        26 ~~~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~-~~~~--~~   96 (244)
                      ...+.++++++++++ ++|||+||..     .|.|.+| ||++++||++++||+||+.||||+.+..+..+ ..+.  ..
T Consensus        31 ~~~h~av~v~i~~~~-g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~  109 (184)
T PRK03759         31 TPLHLAFSCYLFDAD-GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRAT  109 (184)
T ss_pred             CCeeeEEEEEEEcCC-CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEe
Confidence            345666778888876 4999999754     5678776 89999999999999999999999998744332 1221  11


Q ss_pred             --e--eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           97 --I--FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        97 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                        .  ..+...++|.+... +.   ...+.+|+.++.|++++++.+
T Consensus       110 ~~~~~~~~~~~~vf~~~~~-~~---~~~~~~Ev~~~~W~~~~el~~  151 (184)
T PRK03759        110 DPNGIVENEVCPVFAARVT-SA---LQPNPDEVMDYQWVDPADLLR  151 (184)
T ss_pred             cCCCceeeEEEEEEEEEEC-CC---CCCChhHeeeEEEECHHHHHH
Confidence              1  12234456655443 22   123457899999999999987

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=4e-15  Score=117.79  Aligned_cols=107  Identities=16%  Similarity=0.289  Sum_probs=71.1

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc----ccccee--eee---
Q 026059           31 VTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL----LNKDEF--IEK---   96 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l----~~~~~~--~~~---   96 (244)
                      ++++|+.+.+ +++||+||..     +|.|.+|||+++.||++.+||+||++||||+.+...    ..+..+  ...   
T Consensus         3 ~v~viv~~~~-~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~   81 (143)
T cd04694           3 GVAVLLQSSD-QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL   81 (143)
T ss_pred             EEEEEEEcCC-CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence            4566667776 4999999975     679999999999999999999999999999987642    122111  100   


Q ss_pred             ---eeCeEEEEEEEEEeecCC---CCc-CCCCCCceeeEEEEccccccC
Q 026059           97 ---IFGQQRVRLYIIAGVRDD---TAF-APQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        97 ---~~~~~~~~~~~~~~~~~~---~~~-~~~~~~E~~~~~W~~~~el~~  138 (244)
                         ....+...+|+.......   ... ....++|+.+++|++++++.+
T Consensus        82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~  130 (143)
T cd04694          82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKA  130 (143)
T ss_pred             CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHH
Confidence               011233344433322211   001 112357999999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=9.4e-15  Score=110.21  Aligned_cols=105  Identities=35%  Similarity=0.482  Sum_probs=75.1

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce--eeee-eeCeEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEK-IFGQQRVRL  105 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~--~~~~-~~~~~~~~~  105 (244)
                      ++++++.+.+ +++||++|..  .+.|.+|||+++.||++.+||.||+.||+|+.+........  +... ........+
T Consensus         2 ~~~~i~~~~~-~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd02883           2 AVGAVILDED-GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFV   80 (123)
T ss_pred             ceEEEEECCC-CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEE
Confidence            4567777775 4899999988  79999999999999999999999999999998763322222  2211 123455566


Q ss_pred             EEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          106 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      |.+........  .....|..+..|++++++.+
T Consensus        81 ~~~~~~~~~~~--~~~~~e~~~~~w~~~~~l~~  111 (123)
T cd02883          81 FLARLVGGEPT--LLPPDEISEVRWVTLDELPA  111 (123)
T ss_pred             EEEEeCCCCcC--CCCCCccceEEEEcHHHCcc
Confidence            65644333211  13356778899999999987

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=1e-14  Score=114.02  Aligned_cols=108  Identities=26%  Similarity=0.371  Sum_probs=71.4

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccc-c--e--eeeee-eC
Q 026059           31 VTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK-D--E--FIEKI-FG   99 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~-~--~--~~~~~-~~   99 (244)
                      ++.+++++.+ ++|||+++..     .+.|.+|||+++.||++.+||.||++||||+.+..+..+ .  .  +.... ..
T Consensus         2 ~~~~~i~~~~-g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~   80 (133)
T cd04685           2 AARVVLLDPD-DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDG   80 (133)
T ss_pred             eEEEEEEcCC-CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccc
Confidence            4678888877 4999998864     468999999999999999999999999999988432222 1  1  11111 12


Q ss_pred             eEEEEEEEEEeecCCCCcCC---CCCCceeeEEEEccccccCC
Q 026059          100 QQRVRLYIIAGVRDDTAFAP---QTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~---~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+..++|.+.....+.....   ....++..++|+++++|...
T Consensus        81 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          81 RQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             eeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            23344554443321211111   11234668999999999874

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=2.6e-14  Score=109.44  Aligned_cols=99  Identities=19%  Similarity=0.202  Sum_probs=73.8

Q ss_pred             EEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee-eCeEEEEEEEEEe
Q 026059           32 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-FGQQRVRLYIIAG  110 (244)
Q Consensus        32 v~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~-~~~~~~~~~~~~~  110 (244)
                      |.+|+.+++  ++||+++. .+.|.+|||+++.||++++||.||++||||+.+..+..+..+.... .......+|.+..
T Consensus         3 v~vi~~~~~--~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y~a~~   79 (118)
T cd04665           3 VLVICFYDD--GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVYPAVS   79 (118)
T ss_pred             EEEEEEECC--EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEEEEEE
Confidence            455555553  89999876 5789999999999999999999999999999998777776554322 2244556676666


Q ss_pred             ecCCCCcCCCCCCceeeEEEEccccc
Q 026059          111 VRDDTAFAPQTKKEISEIAWQRLDEL  136 (244)
Q Consensus       111 ~~~~~~~~~~~~~E~~~~~W~~~~el  136 (244)
                      ....   ......|+....|++.+..
T Consensus        80 ~~~~---~~~~~~E~~~~~~~~~~~~  102 (118)
T cd04665          80 AQLE---EKASYLETDGPVLFKNEPE  102 (118)
T ss_pred             Eecc---cccccccccCcEEeccCCc
Confidence            5543   1234689999999986654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=6.6e-14  Score=107.14  Aligned_cols=56  Identities=23%  Similarity=0.305  Sum_probs=45.5

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC
Q 026059           28 RVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS   85 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~   85 (244)
                      .++++++|+...+  ++||++|..   .+.|.||||++|.||++.+||.||+.||||+.+.
T Consensus         3 p~~~av~vl~~~~--~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~   61 (118)
T cd04674           3 PLPVVVALLPVDD--GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD   61 (118)
T ss_pred             CcEEEEEEEEECC--CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence            4556666665555  466666654   5899999999999999999999999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.55  E-value=4.8e-14  Score=113.38  Aligned_cols=108  Identities=17%  Similarity=0.301  Sum_probs=75.1

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCCHHHHHHHHHHhhcCCCCCccc--ccce--ee
Q 026059           25 YKVRVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLL--NKDE--FI   94 (244)
Q Consensus        25 y~~~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs~~eaa~REl~EEtGl~v~~l~--~~~~--~~   94 (244)
                      ....+.+++++|++.+ +++||+||..     .|.|++| ||+++.||  .+||+||++||||+.+..+.  .+..  +.
T Consensus        23 ~g~~h~~v~v~v~~~~-g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~   99 (158)
T TIGR02150        23 ETPLHRAFSVFLFNEE-GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYR   99 (158)
T ss_pred             CCCeEEEEEEEEEcCC-CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEE
Confidence            4556667788888876 4999999876     5999997 79999999  49999999999999887542  2222  21


Q ss_pred             ee-eeC-eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           95 EK-IFG-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        95 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .. ..+ .....+|.+... .  ...+ ..+|+.++.|++++++..+
T Consensus       100 ~~~~~g~~~~~~~f~~~~~-~--~~~~-~~~Ev~~~~W~~~~el~~~  142 (158)
T TIGR02150       100 ARDAWGEHELCPVFFARAP-V--PLNP-NPEEVAEYRWVSLEELKEI  142 (158)
T ss_pred             EecCCCcEEEEEEEEEecC-C--cccC-ChhHeeeEEEeCHHHHHHH
Confidence            11 112 234455555432 2  1222 3569999999999999873

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=6.2e-14  Score=108.03  Aligned_cols=55  Identities=31%  Similarity=0.467  Sum_probs=45.2

Q ss_pred             EEEEEEEeCC--CCEEEEEEe-------eCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC
Q 026059           31 VTGAIILDET--YERCILVKG-------WKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS   85 (244)
Q Consensus        31 vv~~ii~~~~--~~kvLLvkr-------~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~   85 (244)
                      ++|+|+++.+  ..+|||+++       ...+.|++|||+++.||++.+||+||++||||+.+.
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            3566776433  237999985       236899999999999999999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.54  E-value=6.9e-14  Score=115.70  Aligned_cols=96  Identities=18%  Similarity=0.079  Sum_probs=67.7

Q ss_pred             CEEEEEEeeC-----CCcEEeCeeecCCC-CCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEEEEEEEEeecCC
Q 026059           42 ERCILVKGWK-----GSSWSFPRGKKNKD-EEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRLYIIAGVRDD  114 (244)
Q Consensus        42 ~kvLLvkr~~-----~~~w~~PgG~ve~g-Es~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~  114 (244)
                      +++|+++|..     .|.|+||||++|++ |++++||+||++||||+.+..+..+..+.. .......++.+.+..... 
T Consensus        44 ~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~~~~~v~~~~~~-  122 (190)
T PRK10707         44 PTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGYQVTPVVGIIPPD-  122 (190)
T ss_pred             CEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCcEEEEEEEEECCC-
Confidence            4899998664     68899999999974 689999999999999999987766665432 122223333343322221 


Q ss_pred             CCcCCCCCCceeeEEEEccccccCC
Q 026059          115 TAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       115 ~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .. ...+.+|+.++.|++++++.+.
T Consensus       123 ~~-~~~d~~Ev~~v~~vpl~e~~~~  146 (190)
T PRK10707        123 LP-YRANEDEVAAVFEMPLAEALHL  146 (190)
T ss_pred             CC-CCCChhhhheEEEEeHHHHhCc
Confidence            11 2234678999999999999874

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.54  E-value=1.4e-13  Score=110.10  Aligned_cols=99  Identities=23%  Similarity=0.198  Sum_probs=73.1

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEEEEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRVRLYIIA  109 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~~~~~~~  109 (244)
                      .|.+|...++  ++||+++.+ ..|++|||++|+||++++||.||++||||+.+..+..+..+... .......++|.+.
T Consensus        26 ~V~ii~~~~~--~~LL~~~~~-~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~  102 (156)
T TIGR02705        26 HVLVIPRYKD--QWLLTEHKR-RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAE  102 (156)
T ss_pred             EEEEEEEECC--EEEEEEEcC-CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEE
Confidence            4445545543  899998764 45999999999999999999999999999998887777664432 2345567777776


Q ss_pred             eecCCCCcCCCCCCceeeEE-EEccccccC
Q 026059          110 GVRDDTAFAPQTKKEISEIA-WQRLDELQP  138 (244)
Q Consensus       110 ~~~~~~~~~~~~~~E~~~~~-W~~~~el~~  138 (244)
                      .....    +  .+|..+.. +++++++++
T Consensus       103 ~~~~~----~--~~e~~E~~~~~~~~~~~~  126 (156)
T TIGR02705       103 VSALE----S--KDDYLETKGPVLLQEIPD  126 (156)
T ss_pred             Eeccc----c--CCCceeeEeEEEHHHHHH
Confidence            65332    1  25556666 799998876

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PRK08999 hypothetical protein; Provisional

Probab=99.52  E-value=1.2e-13  Score=122.45  Aligned_cols=106  Identities=26%  Similarity=0.382  Sum_probs=75.8

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  102 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~  102 (244)
                      .+.++++++.+.+ +++||+||..    .|.|+||||+++.||++.+||.||++||||+.+.....+....+ .......
T Consensus         4 ~~~~~~~vi~~~~-~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~   82 (312)
T PRK08999          4 RIHVAAGVIRDAD-GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVR   82 (312)
T ss_pred             eeEEEEEEEECCC-CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEE
Confidence            3455566666664 4899999875    68999999999999999999999999999998765433332222 1233445


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +++|.+....+.    + ...|..++.|++++++.++
T Consensus        83 i~~y~~~~~~~~----~-~~~e~~~~~Wv~~~el~~~  114 (312)
T PRK08999         83 LDVRRVTAWQGE----P-HGREGQPLAWVAPDELAVY  114 (312)
T ss_pred             EEEEEEEEecCc----c-cCccCCccEEecHHHcccC
Confidence            667766554332    1 2456678899999999874

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=1.4e-13  Score=112.92  Aligned_cols=103  Identities=15%  Similarity=0.158  Sum_probs=70.9

Q ss_pred             EEEeCC-CCEEEEEEeeC-----CCcE-EeCeeecCCCCCHHHHHHHHHHhhcCCCCCccc---ccc--eeeee----ee
Q 026059           35 IILDET-YERCILVKGWK-----GSSW-SFPRGKKNKDEEDHACAIREVQEETGFDVSKLL---NKD--EFIEK----IF   98 (244)
Q Consensus        35 ii~~~~-~~kvLLvkr~~-----~~~w-~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~---~~~--~~~~~----~~   98 (244)
                      ++.+.+ .+++++.||..     +|.| .+|||+++.||++.+||+||++||||+.+..+.   .+.  .+...    ..
T Consensus        40 ~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~  119 (180)
T cd03676          40 YVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGL  119 (180)
T ss_pred             EEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcE
Confidence            344543 34899999887     6999 599999999999999999999999999877532   222  11111    12


Q ss_pred             CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+...++|.+.. ..... ...+++|+.++.|++++++.++
T Consensus       120 ~~e~~~~f~~~~-~~~~~-~~~~~~Ev~~~~~~~~~el~~~  158 (180)
T cd03676         120 QPEVEYVYDLEL-PPDFI-PAPQDGEVESFRLLTIDEVLRA  158 (180)
T ss_pred             eeeEEEEEEEEc-CCCCe-eCCCCCcEeEEEEECHHHHHHH
Confidence            334556665542 22211 1234678999999999999873

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.51  E-value=1.3e-14  Score=124.50  Aligned_cols=115  Identities=16%  Similarity=0.171  Sum_probs=90.5

Q ss_pred             HhhcCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeee
Q 026059           21 DFTSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF   98 (244)
Q Consensus        21 ~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~   98 (244)
                      ....|+..-|++.+++.+.+  ++||.++.+  .|.|++-+|.||+|||+++|+.||++||+|+++.++.+......+ +
T Consensus       136 g~~~fPR~dP~vIv~v~~~~--~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWP-f  212 (279)
T COG2816         136 GHEHFPRIDPCVIVAVIRGD--EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWP-F  212 (279)
T ss_pred             CCccCCCCCCeEEEEEecCC--ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCC-C
Confidence            34678888888888887776  688887766  899999999999999999999999999999999999888765443 3


Q ss_pred             CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEcccc-ccCCCc
Q 026059           99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDE-LQPASD  141 (244)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e-l~~~~~  141 (244)
                      .+..+.-|.....+++   ...+..|+.+++|++.+| ++.+..
T Consensus       213 P~SLMigf~aey~sge---I~~d~~Eleda~WFs~~evl~~L~~  253 (279)
T COG2816         213 PHSLMLGFMAEYDSGE---ITPDEGELEDARWFSRDEVLPALPP  253 (279)
T ss_pred             chhhhhhheeeecccc---ccCCcchhhhccccCHhHHhhhcCC
Confidence            3445555656666665   233458999999999999 655554

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=1e-12  Score=101.57  Aligned_cols=106  Identities=16%  Similarity=0.091  Sum_probs=61.6

Q ss_pred             EEEEEEeCCC-CEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee--eCeEEEEEEEE
Q 026059           32 TGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI--FGQQRVRLYII  108 (244)
Q Consensus        32 v~~ii~~~~~-~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~--~~~~~~~~~~~  108 (244)
                      |.+++.++++ .++|+.+... +.|.+|||++++||++.+||.||++||||+.+.............  ...+.++++.+
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFWHLTLC   81 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEEEEEEE
Confidence            3455554432 3677776554 569999999999999999999999999999873211111111111  12334444444


Q ss_pred             Eeec---CCCCcCCC-CCCceeeEEEEccccccC
Q 026059          109 AGVR---DDTAFAPQ-TKKEISEIAWQRLDELQP  138 (244)
Q Consensus       109 ~~~~---~~~~~~~~-~~~E~~~~~W~~~~el~~  138 (244)
                      ....   ......+. +..+...+.|++++++..
T Consensus        82 ~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~  115 (126)
T cd04663          82 EVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLD  115 (126)
T ss_pred             EecCCCcccccCcccCCCCceEEEEEEccccccc
Confidence            3321   11111111 123334566999999965

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.42  E-value=1.6e-14  Score=124.45  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=81.2

Q ss_pred             hhcCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeC
Q 026059           22 FTSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFG   99 (244)
Q Consensus        22 ~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~   99 (244)
                      -.-|+..-++|..++.+.++.++||.|..+  +|.|.+++|.+|+|||++|||+||++||||++|+.+........+.+.
T Consensus       180 n~~yPr~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~~p  259 (345)
T KOG3084|consen  180 NVIYPRTDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPLMP  259 (345)
T ss_pred             CeeccCCCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCCCc
Confidence            345666777888888888888999988666  899999999999999999999999999999999987655443333233


Q ss_pred             eEEE-EEEEEEeecCCCCcCCCCCC-ceeeEEEEccccccC
Q 026059          100 QQRV-RLYIIAGVRDDTAFAPQTKK-EISEIAWQRLDELQP  138 (244)
Q Consensus       100 ~~~~-~~~~~~~~~~~~~~~~~~~~-E~~~~~W~~~~el~~  138 (244)
                      +..+ ..+.+....+.   ...+.+ |..+.+|++-+++.+
T Consensus       260 ~SLMIgc~ala~~~~~---I~vd~dlEleDaqwF~r~ev~~  297 (345)
T KOG3084|consen  260 QSLMIGCLALAKLNGK---ISVDKDLELEDAQWFDREEVKS  297 (345)
T ss_pred             hHHHHHHHHHHhhCCc---cccCcchhhhhcccccHHHHHH
Confidence            3222 11212121121   122334 888999999888865

>PLN02709 nudix hydrolase

Probab=99.41  E-value=2.5e-12  Score=108.01  Aligned_cols=97  Identities=24%  Similarity=0.157  Sum_probs=65.9

Q ss_pred             CEEEEEEeeC-----CCcEEeCeeecCCC-CCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEEEEEEEEeecC-
Q 026059           42 ERCILVKGWK-----GSSWSFPRGKKNKD-EEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRVRLYIIAGVRD-  113 (244)
Q Consensus        42 ~kvLLvkr~~-----~~~w~~PgG~ve~g-Es~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-  113 (244)
                      .++||++|..     .|.|+||||++|++ +++.+||+||+.||+|+....+..++..... ......++-|.+..... 
T Consensus        51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~  130 (222)
T PLN02709         51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK  130 (222)
T ss_pred             eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence            4899999987     79999999999996 5799999999999999988754333221111 11122344443322211 


Q ss_pred             CCCcCCCCCCceeeEEEEccccccCC
Q 026059          114 DTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       114 ~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .... ..+.+|+.++.|+|+++|.+.
T Consensus       131 ~~~~-~~np~EV~~vf~vPL~~ll~~  155 (222)
T PLN02709        131 AFKP-LPNPAEVEEIFDVPLEMFLKD  155 (222)
T ss_pred             Cccc-cCChhhhheeEEecHHHHhCC
Confidence            1111 134689999999999999864

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.39  E-value=2.7e-12  Score=105.48  Aligned_cols=42  Identities=24%  Similarity=0.334  Sum_probs=39.4

Q ss_pred             EEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCC
Q 026059           43 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV   84 (244)
Q Consensus        43 kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v   84 (244)
                      ++|+++|...+.|.+|||++++||++.+||.||+.||||+.+
T Consensus        50 ~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          50 QFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSL   91 (186)
T ss_pred             EEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence            899999988999999999999999999999999999997754

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PLN03143 nudix hydrolase; Provisional

Probab=99.36  E-value=3e-12  Score=111.81  Aligned_cols=110  Identities=19%  Similarity=0.276  Sum_probs=74.9

Q ss_pred             cEEEEEEE-eCCC-CEEEEEEeeC----CCcEEeCeeecCC-CCCHHHHHHHHHHhhcCCCCC--cccccc---------
Q 026059           30 PVTGAIIL-DETY-ERCILVKGWK----GSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVS--KLLNKD---------   91 (244)
Q Consensus        30 ~vv~~ii~-~~~~-~kvLLvkr~~----~~~w~~PgG~ve~-gEs~~eaa~REl~EEtGl~v~--~l~~~~---------   91 (244)
                      +.|++++. +.++ .+++|+++.+    .-.|+||||.+|+ +|++.+||+||++||||+.+.  .+..+.         
T Consensus       129 ~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~  208 (291)
T PLN03143        129 PAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGC  208 (291)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCc
Confidence            34555443 4332 2489999888    4589999999997 589999999999999999864  344332         


Q ss_pred             -eeeeeeeCeEEEEEEEEEeecCCC--------CcCCCCCCceeeEEEEccccccCC
Q 026059           92 -EFIEKIFGQQRVRLYIIAGVRDDT--------AFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        92 -~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                       .+..++.....+++|.+.......        .....+..|..++.|++++++..+
T Consensus       209 ~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~  265 (291)
T PLN03143        209 RMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRM  265 (291)
T ss_pred             eEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHH
Confidence             233345566777888766543211        011224567889999999998764

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.34  E-value=3.3e-12  Score=98.88  Aligned_cols=110  Identities=25%  Similarity=0.354  Sum_probs=74.1

Q ss_pred             ccEEEEEEEeCCCC--EEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee---eeeeeCe-E
Q 026059           29 VPVTGAIILDETYE--RCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF---IEKIFGQ-Q  101 (244)
Q Consensus        29 v~vv~~ii~~~~~~--kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~---~~~~~~~-~  101 (244)
                      ..++|||.+.-+++  +|||+...+ +..|.+|+|++|+||+..+||.||++||.|+.......+..+   .+..... .
T Consensus         9 r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~~~~   88 (145)
T KOG2839|consen    9 RLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHRTKP   88 (145)
T ss_pred             EEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhhcccc
Confidence            34667777766655  899999887 889999999999999999999999999999987744323222   2221111 1


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .-..|.... ......-+....+.....|+.++|..+.
T Consensus        89 k~~~~~l~v-~e~le~wp~~~~~~r~r~W~~ledA~~~  125 (145)
T KOG2839|consen   89 KGVMYVLAV-TEELEDWPESEHEFREREWLKLEDAIEL  125 (145)
T ss_pred             cceeehhhh-hhhcccChhhhcccceeEEeeHHHHHHH
Confidence            122343322 2221112333456889999999998773

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.32  E-value=1.2e-11  Score=95.58  Aligned_cols=107  Identities=29%  Similarity=0.458  Sum_probs=65.7

Q ss_pred             EEEEEeCCCCEEEEEEeeCCC-cEEeCeeecCCCCCHHH-HHHHHHHhhcCCCCC--cccccceeeeeee-Ce----EEE
Q 026059           33 GAIILDETYERCILVKGWKGS-SWSFPRGKKNKDEEDHA-CAIREVQEETGFDVS--KLLNKDEFIEKIF-GQ----QRV  103 (244)
Q Consensus        33 ~~ii~~~~~~kvLLvkr~~~~-~w~~PgG~ve~gEs~~e-aa~REl~EEtGl~v~--~l~~~~~~~~~~~-~~----~~~  103 (244)
                      .+++......++|++++...+ .|.+|||+++.||+..+ ||+||++||||+.+.  .+..+..+..... ..    ...
T Consensus        15 ~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (161)
T COG0494          15 AVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREH   94 (161)
T ss_pred             EEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccceEE
Confidence            343443321489999988865 99999999999999888 999999999999887  4444333322111 11    111


Q ss_pred             EEEEEEeecCCCCcCCCC----CCceeeEEEEccccccCC
Q 026059          104 RLYIIAGVRDDTAFAPQT----KKEISEIAWQRLDELQPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~----~~E~~~~~W~~~~el~~~  139 (244)
                      ..+...............    ..+...+.|++++++...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  134 (161)
T COG0494          95 RVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAAL  134 (161)
T ss_pred             EEEEeeeccccccccccccCCCcchhhceeeeeHHHcccc
Confidence            111111111111111111    257889999999998773

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.23  E-value=6.4e-11  Score=101.46  Aligned_cols=110  Identities=13%  Similarity=0.160  Sum_probs=70.1

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCC-----------------HHHHHHHHHHhhcCCC
Q 026059           27 VRVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEE-----------------DHACAIREVQEETGFD   83 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs-----------------~~eaa~REl~EEtGl~   83 (244)
                      .-+.++.++|++.++ ++||+||..     +|.|+.. +||+..||+                 ..+||+||++||||+.
T Consensus        54 l~Hra~~v~i~n~~g-~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~  132 (247)
T PLN02552         54 LLHRAFSVFLFNSKY-ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIP  132 (247)
T ss_pred             ceEEEEEEEEEcCCC-eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCC
Confidence            345677888898885 999999987     6799665 455544422                 6789999999999998


Q ss_pred             CCc-----ccccceeee--eee------C----eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           84 VSK-----LLNKDEFIE--KIF------G----QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        84 v~~-----l~~~~~~~~--~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +..     +..+..+..  ...      +    +...++|+... .+.... ..+.+|+.++.|++++++.++
T Consensus       133 ~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~-~~~~~l-~lq~eEV~~~~wvs~~el~~~  203 (247)
T PLN02552        133 AEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRP-VRDVKV-NPNPDEVADVKYVNREELKEM  203 (247)
T ss_pred             ccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEe-cCCCcc-cCCHHHhheEEEEeHHHHHHH
Confidence            653     322322111  111      1    23333443322 222222 234689999999999999874

>PLN02791 Nudix hydrolase homolog

Probab=99.20  E-value=1e-10  Score=113.61  Aligned_cols=111  Identities=15%  Similarity=0.248  Sum_probs=77.8

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCCc--ccccceeeee---
Q 026059           28 RVPVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEK---   96 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~~--l~~~~~~~~~---   96 (244)
                      .+.++.+.|++.+.+++||+||..     +|.|++ ||||++.||+..+||+||+.||+|+.+..  +..+..+...   
T Consensus        31 ~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~  110 (770)
T PLN02791         31 YHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVI  110 (770)
T ss_pred             ceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeec
Confidence            555667888886435999999987     799999 79999999999999999999999998642  3333222110   


Q ss_pred             e----eCeEEEEEEEEEeecCCC-CcCCCCCCceeeEEEEccccccC
Q 026059           97 I----FGQQRVRLYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        97 ~----~~~~~~~~~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .    ..+...++|.+....... .....+++|+.++.|++++++.+
T Consensus       111 ~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~  157 (770)
T PLN02791        111 NDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKS  157 (770)
T ss_pred             cCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHH
Confidence            0    223556677765322211 11123468999999999999975

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=99.05  E-value=6.2e-10  Score=92.81  Aligned_cols=97  Identities=20%  Similarity=0.225  Sum_probs=63.8

Q ss_pred             CEEEEEEeeC-----CCcEEeCeeecCC-CCCHHHHHHHHHHhhcCCCCCcccccceeeeeee-CeEEEEEEEEEeecCC
Q 026059           42 ERCILVKGWK-----GSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF-GQQRVRLYIIAGVRDD  114 (244)
Q Consensus        42 ~kvLLvkr~~-----~~~w~~PgG~ve~-gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~  114 (244)
                      .+|||.||.+     .|.-+||||+.|. +++..++|.||.+||+|++...+..++....... ....++-+.+......
T Consensus        58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~  137 (246)
T KOG3069|consen   58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKK  137 (246)
T ss_pred             eEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEeccc
Confidence            4899999887     7999999999998 5678899999999999999875444432211111 1111121211111111


Q ss_pred             C-CcCCCCCCceeeEEEEccccccC
Q 026059          115 T-AFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       115 ~-~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      . ........|+.++.|+|++++..
T Consensus       138 ~l~~~~ln~gEv~~~F~VPL~~ll~  162 (246)
T KOG3069|consen  138 ILPSLRLNSGEVESAFWVPLTDLLL  162 (246)
T ss_pred             ccccccCCchheeeeeeeeHHHHhh
Confidence            0 11223468999999999999986

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.01  E-value=2.8e-09  Score=86.59  Aligned_cols=111  Identities=22%  Similarity=0.268  Sum_probs=71.8

Q ss_pred             cccEEEEEE-EeCC-CCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc-cccceeeeeeeCe
Q 026059           28 RVPVTGAII-LDET-YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIEKIFGQ  100 (244)
Q Consensus        28 ~v~vv~~ii-~~~~-~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l-~~~~~~~~~~~~~  100 (244)
                      +++.|+++. +..+ .-.++|+++.+    +-..++|+|-+|.||+.+.||+||++||||+..... .....|..++..+
T Consensus        72 ~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn  151 (225)
T KOG3041|consen   72 RADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTN  151 (225)
T ss_pred             cCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCC
Confidence            455555443 2222 23889999888    346789999999999999999999999999985432 2233355555444


Q ss_pred             EE--EEEEEEEeecCC-CC-cCCCCCCceeeEEEEccccccC
Q 026059          101 QR--VRLYIIAGVRDD-TA-FAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       101 ~~--~~~~~~~~~~~~-~~-~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ..  +.++.+.+...+ +. ....++.|..++.-+++.+|.+
T Consensus       152 ~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~  193 (225)
T KOG3041|consen  152 CNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWR  193 (225)
T ss_pred             CceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHH
Confidence            33  333433332221 11 1223467888999999888876

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.92  E-value=1.7e-08  Score=76.06  Aligned_cols=96  Identities=15%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRL  105 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~~~  105 (244)
                      .+++++.++  +++||.||..    +|.|+||+|.++.+|+.+++..||+.||.++....   +..+.+ ..+....+++
T Consensus         5 ~~~~ii~~~--~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~H~fth~~~~~~~   79 (118)
T cd03431           5 IAVVVIRND--GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLEP---LGTVKHTFTHFRLTLHV   79 (118)
T ss_pred             EEEEEEecC--CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCccccc---ceeEEEecCCeEEEEEE
Confidence            344555443  4899999976    89999999999999999999999999987641111   122211 1122344566


Q ss_pred             EEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          106 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      |.+....+.        .+..+..|++++++...
T Consensus        80 ~~~~~~~~~--------~~~~~~~W~~~eel~~~  105 (118)
T cd03431          80 YLARLEGDL--------LAPDEGRWVPLEELDEY  105 (118)
T ss_pred             EEEEEeCCC--------cCccccEEccHHHHhhC
Confidence            665443221        23456799999999873

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=1.4e-09  Score=94.13  Aligned_cols=110  Identities=24%  Similarity=0.420  Sum_probs=74.0

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccc--ceeeeeeeCe
Q 026059           28 RVPVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK--DEFIEKIFGQ  100 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~--~~~~~~~~~~  100 (244)
                      +.-.+++.|.|.+ ++||+++...     .|.|-+|+|.|+++|++.++|+||++||||++......+  ..-....+..
T Consensus       114 h~vgvg~~V~n~~-~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~~~~  192 (295)
T KOG0648|consen  114 HRVGVGAFVLNKK-KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNATFGL  192 (295)
T ss_pred             hheeeeeeEecCC-ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHHHHhhhcchhhc
Confidence            3445578888887 5999998754     799999999999999999999999999999976532222  1111111221


Q ss_pred             EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          101 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .....|+++.+..-.........|+..+.|+++++...
T Consensus       193 ~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~  230 (295)
T KOG0648|consen  193 IKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVS  230 (295)
T ss_pred             ccccceeEEEeeccccccchhHHHHHHHhcccHHHhhc
Confidence            23344445444432222223356788889999997765

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.46  E-value=1.7e-06  Score=65.43  Aligned_cols=97  Identities=20%  Similarity=0.303  Sum_probs=54.8

Q ss_pred             EEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEEEEEEE
Q 026059           34 AIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRVRLYII  108 (244)
Q Consensus        34 ~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~~~~~~  108 (244)
                      +++.+.+ +++||.||..    +|.|+||.-.++. +...+.+.+.+.+..|+.+.....+..+.+. .+....+++|.+
T Consensus         2 ~~i~~~~-~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~   79 (114)
T PF14815_consen    2 LLIIRSQ-GRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEV   79 (114)
T ss_dssp             EEEEETT-SEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEE
T ss_pred             EEEEEeC-CEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEE
Confidence            4455555 4999999998    8999999988874 3335656667778888876654444443332 233445666766


Q ss_pred             EeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          109 AGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .......       ....+..|++++++.+.
T Consensus        80 ~~~~~~~-------~~~~~~~W~~~~~l~~~  103 (114)
T PF14815_consen   80 EVSADPP-------AEPEEGQWVSLEELDQY  103 (114)
T ss_dssp             EEE-SS-----------TTEEEEEGGGGGGS
T ss_pred             EecCCCC-------CCCCCcEEEEHHHHhhC
Confidence            5544321       13567899999999863

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.39  E-value=9.6e-07  Score=67.05  Aligned_cols=103  Identities=19%  Similarity=0.290  Sum_probs=64.1

Q ss_pred             EEEEEEeCCC--CEEEEEEeeC-------CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC-cccccceeeeeeeCeE
Q 026059           32 TGAIILDETY--ERCILVKGWK-------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-KLLNKDEFIEKIFGQQ  101 (244)
Q Consensus        32 v~~ii~~~~~--~kvLLvkr~~-------~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~-~l~~~~~~~~~~~~~~  101 (244)
                      ++++++....  -.|||+.--.       .|-|++|.|....||.+..||.||..||+|+.+. .+..++++....  ..
T Consensus         6 AGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ~G--GK   83 (161)
T COG4119           6 AGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQSG--GK   83 (161)
T ss_pred             ceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhccCC--Cc
Confidence            4556554322  2666665433       6899999999999999999999999999999886 344444332211  12


Q ss_pred             EEEEEEEE----------------eecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          102 RVRLYIIA----------------GVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       102 ~~~~~~~~----------------~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .+..|-+.                -.....  .-..-.|++...|+++.+...
T Consensus        84 vVta~~veae~Dva~~rSntFe~eWPprSG--~M~~FPEVDRagWF~l~eAr~  134 (161)
T COG4119          84 VVTAFGVEAELDVADARSNTFELEWPPRSG--KMRKFPEVDRAGWFPLAEART  134 (161)
T ss_pred             EEEEEeeeeeeehhhhhcceeeeecCCCCC--ccccCcccccccceecHHHHh
Confidence            22222222                111111  111236788899999888765

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.18  E-value=2.7e-06  Score=68.24  Aligned_cols=106  Identities=13%  Similarity=0.163  Sum_probs=73.5

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCCc---cccccee--eeee
Q 026059           29 VPVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSK---LLNKDEF--IEKI   97 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~~---l~~~~~~--~~~~   97 (244)
                      +.+..+.++|++| ++||.||..     .+.|.- ..||=-+||+..+|++|-+.+|+|+.+..   +..+..+  ....
T Consensus        33 HrAFS~~lFne~g-~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~  111 (185)
T COG1443          33 HRAFSSFLFNERG-QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAAD  111 (185)
T ss_pred             HhhhheeEECCCC-ceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccC
Confidence            4556788999985 999998876     566654 35888899999999999999999999883   2222222  1111


Q ss_pred             ----eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           98 ----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        98 ----~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                          ..+.+.-++.+....   ... ..++|+.+++|++++++.+.
T Consensus       112 ~~~~~E~Eic~V~~~~~~~---~~~-~npdEV~~~~wv~~e~l~~~  153 (185)
T COG1443         112 PDGIVENEICPVLAARLDS---ALD-PNPDEVMDYRWVSPEDLKEM  153 (185)
T ss_pred             CCCcceeeeeeEEEEeecC---CCC-CChHHhhheeccCHHHHHHh
Confidence                223444455444432   222 34689999999999999873

>PLN02839 nudix hydrolase

Probab=98.10  E-value=1.8e-05  Score=70.99  Aligned_cols=95  Identities=9%  Similarity=0.024  Sum_probs=60.9

Q ss_pred             CEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCC---cccccceeeee--e-eC--eEEEEEEE
Q 026059           42 ERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVS---KLLNKDEFIEK--I-FG--QQRVRLYI  107 (244)
Q Consensus        42 ~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~---~l~~~~~~~~~--~-~~--~~~~~~~~  107 (244)
                      .++.+.||..     +|+|+. .+|++..||++.+|++||+.||.|+...   .+...+.+...  . .+  .....+|-
T Consensus       218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YD  297 (372)
T PLN02839        218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYD  297 (372)
T ss_pred             eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEee
Confidence            4777777765     677754 5899999999999999999999999755   23333322111  1 11  11222333


Q ss_pred             EEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          108 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       108 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +.. +.+..+.+ .+.|+.++.+++++|+.+
T Consensus       298 LeL-P~df~P~~-qDGEVe~F~Lm~v~EV~~  326 (372)
T PLN02839        298 LEL-PQDFVPKN-QDGEVESFKLIPVAQVAN  326 (372)
T ss_pred             eec-CCccccCC-CccceeEEEEecHHHHHH
Confidence            322 22222222 378999999999999976

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.60  E-value=5.4e-05  Score=62.88  Aligned_cols=39  Identities=28%  Similarity=0.375  Sum_probs=36.4

Q ss_pred             EEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcC
Q 026059           43 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETG   81 (244)
Q Consensus        43 kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtG   81 (244)
                      +++.+||...+.|.+|||.+|+||.+-.+++||..||.=
T Consensus       140 e~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            678889988999999999999999999999999999974

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=97.22  E-value=0.00064  Score=59.01  Aligned_cols=113  Identities=15%  Similarity=0.240  Sum_probs=76.1

Q ss_pred             hcCcccccEEEEEEEeCCCCEEEEEEeeC-----------------------------CCcEEeCeeecCCCCCHHHHHH
Q 026059           23 TSYKVRVPVTGAIILDETYERCILVKGWK-----------------------------GSSWSFPRGKKNKDEEDHACAI   73 (244)
Q Consensus        23 ~~y~~~v~vv~~ii~~~~~~kvLLvkr~~-----------------------------~~~w~~PgG~ve~gEs~~eaa~   73 (244)
                      ..+..++..|.+++++.+..++|++++.+                             +-..++.+|.|+.+-|+.+-|.
T Consensus        20 ~e~~q~~~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~   99 (405)
T KOG4432|consen   20 SEFNQKMSSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIAS   99 (405)
T ss_pred             HHHHhhccceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhH
Confidence            34455677778899998888999998765                             1234677899999999999999


Q ss_pred             HHHHhhcCCCCCc--ccccceeeeee-eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           74 REVQEETGFDVSK--LLNKDEFIEKI-FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        74 REl~EEtGl~v~~--l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .|+.||+|+.+..  ++.+.+|.... ....-.++|++......   ....+..+..-+..+++-..+
T Consensus       100 eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~es~---kis~gggv~~~~~~~~~~a~e  164 (405)
T KOG4432|consen  100 EEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDESM---KISEGGGVITKVYYPVNVARE  164 (405)
T ss_pred             HHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecchhh---ccccCCceeeEEEEeehhhHH
Confidence            9999999999873  55555554322 22345678877654322   233344455555555554444

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=97.17  E-value=0.0015  Score=53.53  Aligned_cols=71  Identities=15%  Similarity=0.304  Sum_probs=51.6

Q ss_pred             cchHHHHHHhhcCcccccEEEEEEEeCCC-CEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCC
Q 026059           13 AHIDDIFKDFTSYKVRVPVTGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV   84 (244)
Q Consensus        13 ~~~~~~~~~~~~y~~~v~vv~~ii~~~~~-~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v   84 (244)
                      +....+...|.+.-.+..|.|++++...+ -+|||.|. ....|.+|||.+.+||+..++..|.+.+-.|..-
T Consensus        28 ~rl~rl~~~y~~~GmRrsVe~Vllvh~h~~PHvLLLq~-~~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~   99 (188)
T PF13869_consen   28 ARLQRLKENYEKEGMRRSVEGVLLVHEHGHPHVLLLQI-GNTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED   99 (188)
T ss_dssp             HHHHHHHHHHHHHSSEEEEEEEEEEEETTEEEEEEEEE-TTTEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred             HHHHHHHHHHHHhCCceEEEEEEEEecCCCcEEEEEec-cCccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence            44556666777777788888888776653 37999984 4569999999999999999999999999999764

...

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=96.84  E-value=0.0093  Score=47.50  Aligned_cols=100  Identities=21%  Similarity=0.302  Sum_probs=61.8

Q ss_pred             EEEEEeCCCCEEEEEEeeC-------CCcEEe-CeeecCCCC---CHHH----HHHHHHHhhcCCCCC---cccccceee
Q 026059           33 GAIILDETYERCILVKGWK-------GSSWSF-PRGKKNKDE---EDHA----CAIREVQEETGFDVS---KLLNKDEFI   94 (244)
Q Consensus        33 ~~ii~~~~~~kvLLvkr~~-------~~~w~~-PgG~ve~gE---s~~e----aa~REl~EEtGl~v~---~l~~~~~~~   94 (244)
                      -++|.+++  +||+-+|-.       .+.+++ -|||+..++   +..+    .+.||+.||+++.-.   .+..++- +
T Consensus        65 Yvvi~~ed--evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGl-I  141 (203)
T COG4112          65 YVVIMDED--EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGL-I  141 (203)
T ss_pred             EEEEecCC--EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeee-e
Confidence            45666665  899998876       456776 489998764   3333    267999999999744   3333331 2


Q ss_pred             ee----eeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           95 EK----IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        95 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +.    ....|+-.+|..+....+..   ....+..++.|+.+.+|..
T Consensus       142 Ndd~neVgkVHiG~lf~~~~k~ndve---vKEkd~~~~kwik~~ele~  186 (203)
T COG4112         142 NDDTNEVGKVHIGALFLGRGKFNDVE---VKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             cCCCcccceEEEEEEEEeecccccee---eeecceeeeeeeeHHHHHH
Confidence            21    12223444555554443311   1245678899999999876

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=96.43  E-value=0.019  Score=50.09  Aligned_cols=114  Identities=15%  Similarity=0.208  Sum_probs=71.5

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC-------------------------------CCcEEeCeeecCCCCCHHHHHHHH
Q 026059           27 VRVPVTGAIILDETYERCILVKGWK-------------------------------GSSWSFPRGKKNKDEEDHACAIRE   75 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~-------------------------------~~~w~~PgG~ve~gEs~~eaa~RE   75 (244)
                      ..+..+.+|++|-...+++|+|+.+                               +-..++.+|.|+..-+..+-|.||
T Consensus       227 k~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e  306 (405)
T KOG4432|consen  227 KCHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARE  306 (405)
T ss_pred             hCCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHH
Confidence            3456678888887655777776554                               112345578888888999999999


Q ss_pred             HHhhcCCCCCc--ccccceeeee-eeCeEEEEEEEEEeecCCCC---cCCCCCCceeeEEEEccccccCCC
Q 026059           76 VQEETGFDVSK--LLNKDEFIEK-IFGQQRVRLYIIAGVRDDTA---FAPQTKKEISEIAWQRLDELQPAS  140 (244)
Q Consensus        76 l~EEtGl~v~~--l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~E~~~~~W~~~~el~~~~  140 (244)
                      ..||+|+++..  +.....|... +.....-..|++...+....   .-..+.+|..+..-+++++++.+.
T Consensus       307 ~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~  377 (405)
T KOG4432|consen  307 SVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLY  377 (405)
T ss_pred             HHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHH
Confidence            99999999874  5444444432 11112234444443332210   011234678888999999998753

>PRK10880 adenine DNA glycosylase; Provisional

Probab=95.98  E-value=0.059  Score=48.76  Aligned_cols=84  Identities=14%  Similarity=0.191  Sum_probs=43.4

Q ss_pred             CEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEE--EEEEEEEeecCCC
Q 026059           42 ERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQR--VRLYIIAGVRDDT  115 (244)
Q Consensus        42 ~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  115 (244)
                      +++||.||..    +|.|+||..  +..+     ..++..|+.|+.......+..+.+ .+.+..  +++|.+...... 
T Consensus       242 ~~~~l~~r~~~gl~~gl~~fP~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~H-~fTH~~~~~~~~~~~~~~~~-  312 (350)
T PRK10880        242 DEVWLEQRPPSGLWGGLFCFPQF--ADEE-----ELRQWLAQRGIAADNLTQLTAFRH-TFSHFHLDIVPMWLPVSSFT-  312 (350)
T ss_pred             CEEEEEECCccChhhccccCCCC--cchh-----hHHHHHHhcCCchhhhcccCceEE-EEeeEEEEEEEEEEEccccc-
Confidence            4899999876    899999963  2111     245566788875332222222221 122233  334433321110 


Q ss_pred             CcCCCCCCceeeEEEEccccccCC
Q 026059          116 AFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       116 ~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                         ....  ..+..|++++++...
T Consensus       313 ---~~~~--~~~~~w~~~~~~~~~  331 (350)
T PRK10880        313 ---GCMD--EGNGLWYNLAQPPSV  331 (350)
T ss_pred             ---cccC--CcCCeEechHHhccc
Confidence               0001  123369999999873

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=95.73  E-value=0.035  Score=44.53  Aligned_cols=68  Identities=18%  Similarity=0.307  Sum_probs=51.6

Q ss_pred             chHHHHHHhhcCcccccEEEEEEEeCCC-CEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCC
Q 026059           14 HIDDIFKDFTSYKVRVPVTGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF   82 (244)
Q Consensus        14 ~~~~~~~~~~~y~~~v~vv~~ii~~~~~-~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl   82 (244)
                      +...|...|++--.+-.|-|++|+.+.. .+|||.|- +...+.+|||.+++||+-.+.+.|-+-|-+|-
T Consensus        55 rf~rmk~ey~k~gmRrsvegvlivheH~lPHvLLLQi-g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr  123 (221)
T KOG1689|consen   55 RFARMKIEYMKEGMRRSVEGVLIVHEHNLPHVLLLQI-GNTFFKLPGGRLRPGEDEADGLKRLLTESLGR  123 (221)
T ss_pred             HHHHHHHHHHhhhhhheeeeeEEEeecCCCeEEEEee-CCEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence            3444555566666677777777766542 37888864 36789999999999999999999999999993

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.05  E-value=0.023  Score=46.82  Aligned_cols=109  Identities=15%  Similarity=0.252  Sum_probs=64.7

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEe-----Ce---eecCC--CCCHHHHHHHHHHhhcCCCCCc-----
Q 026059           27 VRVPVTGAIILDETYERCILVKGWK-----GSSWSF-----PR---GKKNK--DEEDHACAIREVQEETGFDVSK-----   86 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~-----Pg---G~ve~--gEs~~eaa~REl~EEtGl~v~~-----   86 (244)
                      .-+.+..+++++.++ ++||+||..     .+.|.-     |-   |..+.  +.....||.|-+.-|+|+....     
T Consensus        50 lLHRaFSVFlFns~~-~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee  128 (225)
T KOG0142|consen   50 LLHRAFSVFLFNSKN-ELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEE  128 (225)
T ss_pred             hhhheeeEEEecCcc-hHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHH
Confidence            445566788899884 899998875     344421     11   22222  2357889999999999998764     


Q ss_pred             ccccce--eeeeee---CeEEE-EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC
Q 026059           87 LLNKDE--FIEKIF---GQQRV-RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  140 (244)
Q Consensus        87 l~~~~~--~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  140 (244)
                      +..+..  |.....   +.+-+ .+.++..   +.... ..++|+.+++|++.++|.++-
T Consensus       129 ~~~ltrihYkA~sdg~wGEhEiDYiL~~~~---~~~~n-PnpnEv~e~ryvs~eelkel~  184 (225)
T KOG0142|consen  129 FNFLTRIHYKAPSDGIWGEHEIDYILFLVK---DVTLN-PNPNEVSEIRYVSREELKELV  184 (225)
T ss_pred             cccceeeeeecCCCCCcccceeeEEEEEec---cCCCC-CChhhhhHhheecHHHHHHHH
Confidence            333332  222221   22222 2222222   22222 236899999999999998843

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=94.79  E-value=0.12  Score=44.06  Aligned_cols=92  Identities=20%  Similarity=0.259  Sum_probs=59.7

Q ss_pred             EEEEEEee-C-CCcEEeCeeec-CCCCCHHHHHHHHHHhhcCCCCCccc----ccceeeee-e--e-----CeEEEEEEE
Q 026059           43 RCILVKGW-K-GSSWSFPRGKK-NKDEEDHACAIREVQEETGFDVSKLL----NKDEFIEK-I--F-----GQQRVRLYI  107 (244)
Q Consensus        43 kvLLvkr~-~-~~~w~~PgG~v-e~gEs~~eaa~REl~EEtGl~v~~l~----~~~~~~~~-~--~-----~~~~~~~~~  107 (244)
                      =+||+++. + .+.|.||.+.. +.++++..+|.|++.+-.|-....+.    .++++... .  .     -...+.+|.
T Consensus       140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k  219 (263)
T KOG4548|consen  140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFK  219 (263)
T ss_pred             EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEee
Confidence            57888855 2 68999999999 99999999999999999997655321    11211110 0  0     012244455


Q ss_pred             EEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          108 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       108 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +..+.+..    .......++.|++.++|-+
T Consensus       220 ~~lv~~~~----~kn~n~edfvWvTkdel~e  246 (263)
T KOG4548|consen  220 ASLVANSN----QKNQNKEDFVWVTKDELGE  246 (263)
T ss_pred             eeeccccc----hhcccccceEEechHHHhh
Confidence            55554431    1234455699999999987

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=93.63  E-value=0.0091  Score=52.72  Aligned_cols=83  Identities=27%  Similarity=0.580  Sum_probs=69.7

Q ss_pred             ccCccc---cccccchHHHHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHH
Q 026059            3 NSCDVL---RPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQ   77 (244)
Q Consensus         3 ~~~~~l---~~~~~~~~~~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~   77 (244)
                      .-||.|   ..|+.+.+...+.+..++..++++++++.+-..+....++...  +..|.||.|+++.||-...+++|+..
T Consensus       209 ~~~~~l~vlkk~~~k~~~~vak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~  288 (348)
T KOG2937|consen  209 MVCPFLRVLKKWILKADEVVAKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTF  288 (348)
T ss_pred             ccchHHHHHHHHHHhccchhhcCcccCccchhHHhhhhccccccceeecccccccccccCcccccccCCccccchhhhcC
Confidence            456664   4557888889999999999999998888877666666666555  78999999999999999999999999


Q ss_pred             hhcCCCCC
Q 026059           78 EETGFDVS   85 (244)
Q Consensus        78 EEtGl~v~   85 (244)
                      ||+|....
T Consensus       289 ~e~~f~~~  296 (348)
T KOG2937|consen  289 EEPGFPFG  296 (348)
T ss_pred             CCcCCccc
Confidence            99999866

>PRK13910 DNA glycosylase MutY; Provisional

Probab=91.93  E-value=1.1  Score=39.43  Aligned_cols=26  Identities=15%  Similarity=0.124  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCEEEEEEeeC---CCcEEeCee
Q 026059           33 GAIILDETYERCILVKGWK---GSSWSFPRG   60 (244)
Q Consensus        33 ~~ii~~~~~~kvLLvkr~~---~~~w~~PgG   60 (244)
                      .+++.++  +++||.||.+   +|.|+||+.
T Consensus       190 ~~~~~~~--~~~ll~kr~~~l~~gl~~fP~~  218 (289)
T PRK13910        190 LGVVIQN--NQIALEKIEQKLYLGMHHFPNL  218 (289)
T ss_pred             EEEEEEC--CEEEEEECCCchhcccccCCCC
Confidence            3444443  3899998855   899999963

>PF14443 DBC1: DBC1

Probab=81.69  E-value=2.4  Score=32.57  Aligned_cols=46  Identities=30%  Similarity=0.381  Sum_probs=32.8

Q ss_pred             EEEEEEeeC-----CCcEEeC--eeecCCC-CCHHHHHHHHHHhhcCCCCCccc
Q 026059           43 RCILVKGWK-----GSSWSFP--RGKKNKD-EEDHACAIREVQEETGFDVSKLL   88 (244)
Q Consensus        43 kvLLvkr~~-----~~~w~~P--gG~ve~g-Es~~eaa~REl~EEtGl~v~~l~   88 (244)
                      ++|+.++-+     +|.|+--  ||.-+.| ..+..+|+|-++|-||++.+.-.
T Consensus         9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~Ct   62 (126)
T PF14443_consen    9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNCT   62 (126)
T ss_pred             eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhcC
Confidence            556665544     7888654  5555543 56899999999999999987533

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=80.38  E-value=3.3  Score=36.29  Aligned_cols=27  Identities=15%  Similarity=0.231  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCEEEEEEeeC----CCcEEeCee
Q 026059           33 GAIILDETYERCILVKGWK----GSSWSFPRG   60 (244)
Q Consensus        33 ~~ii~~~~~~kvLLvkr~~----~~~w~~PgG   60 (244)
                      .+++.+.+ +++||.||..    +|.|+||+.
T Consensus       231 ~~~~~~~~-~~~~~~~r~~~~~~~gl~~~p~~  261 (275)
T TIGR01084       231 FLVLQNYD-GEVLLEQRPEKGLWGGLYCFPQF  261 (275)
T ss_pred             EEEEEeCC-CeEEEEeCCCCchhhccccCCCC
Confidence            34444444 4899999876    899999973

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
2a6t_A	271	Crystal Structure Of S.Pombe Mrna Decapping Enzyme		7e-40
2qkm_B	266	The Crystal Structure Of Fission Yeast Mrna Decappi		7e-40
2jvb_A	146	Solution Structure Of Catalytic Domain Of Ydcp2 Len		1e-22
3f13_A	163	Crystal Structure Of Putative Nudix Hydrolase Famil		2e-04

>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p Length = 271

Iteration: 1
 Score =  160 bits (404), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
           +F  C +L  +    ++ F DF  YK R+PV GAI+LD + ++C+LVKGWK SS W FP+
Sbjct: 73  LFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPK 132
Query: 60  GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
           GK +KDE D  CAIREV EETGFD S  +N +EFI+     Q VRLYII G+  DT F  
Sbjct: 133 GKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFES 192
Query: 120 QTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 167
           +T+KEIS+I W  L +L     +         K YMV PFLA LKKWI
Sbjct: 193 RTRKEISKIEWHNLMDLPTFKKN--KPQTMKNKFYMVIPFLAPLKKWI 238

>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping Enzyme Dcp1-Dcp2 Complex Length = 266

Iteration: 1
 Score =  160 bits (404), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
           +F  C +L  +    ++ F DF  YK R+PV GAI+LD + ++C+LVKGWK SS W FP+
Sbjct: 68  LFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPK 127
Query: 60  GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
           GK +KDE D  CAIREV EETGFD S  +N +EFI+     Q VRLYII G+  DT F  
Sbjct: 128 GKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFES 187
Query: 120 QTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 167
           +T+KEIS+I W  L +L     +         K YMV PFLA LKKWI
Sbjct: 188 RTRKEISKIEWHNLMDLPTFKKN--KPQTMKNKFYMVIPFLAPLKKWI 233

>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2 Length = 146

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Query: 26  KVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 85
           K  +PV GA I +E   + +LV+G +  SWSFPRGK +KDE D  C IREV+EE GFD++
Sbjct: 1   KKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLT 60
Query: 86  KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVIS 145
             ++ ++FIE+    +  ++++I+GV +   F PQ + EI +I W    ++        +
Sbjct: 61  DYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISK------T 114
Query: 146 HGVTGLKLYMVAPFLASLKKWISAHK 171
              + +K Y++   +  L  W+   +
Sbjct: 115 MYKSNIKYYLINSMMRPLSMWLRHQR 140

>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family Member From Chromobacterium Violaceum Length = 163

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 45  ILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVR 104
           +LV   +G  ++ P GK N+ E      IRE++EETG  ++ +L   + I   F   +V 
Sbjct: 29  VLVTASRGGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITP-FNAHKVY 87
Query: 105 LYIIAGVRDDTAFAPQTKKEISEIAW 130
           L I  G        P+ + EI  IA 
Sbjct: 88  LCIAQG-------QPKPQNEIERIAL 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	7e-59
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	2e-52
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	8e-18
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-14
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	7e-14
3f13_A	163	Putative nudix hydrolase family member; structural	7e-13
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	7e-13
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	4e-12
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	5e-12
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	5e-12
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	1e-11
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	2e-11
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	4e-11
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	9e-11
3grn_A	153	MUTT related protein; structural genomics, hydrola	2e-10
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	3e-10
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	4e-10
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	5e-10
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	1e-09
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	2e-09
2b06_A	155	MUTT/nudix family protein; structural genomics, P	2e-09
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	7e-09
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	1e-08
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	1e-08
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	1e-08
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	1e-08
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	2e-08
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	2e-08
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	2e-08
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	7e-08
3exq_A	161	Nudix family hydrolase; protein structure initiati	1e-07
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	2e-07
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	2e-07
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	2e-07
2qkl_B	95	SPAC19A8.12 protein, SPBC3B9.21 protein; protein-p	4e-07
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	6e-07
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	6e-07
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	7e-07
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	9e-07
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	6e-06
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	7e-06
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	7e-06
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	9e-06
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	2e-05
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	2e-05
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	2e-05
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	3e-05
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	5e-05
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	6e-05
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	6e-05
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	1e-04
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	1e-04
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	2e-04

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score =  186 bits (474), Expect = 7e-59
 Identities = 84/174 (48%), Positives = 107/174 (61%), Gaps = 3/174 (1%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
           +F  C +L  +    ++ F DF  YK R+PV GAI+LD + ++C+LVKGWK SS W FP+
Sbjct: 73  LFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPK 132

Query: 60  GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
           GK +KDE D  CAIREV EETGFD S  +N +EFI+     Q VRLYII G+  DT F  
Sbjct: 133 GKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFES 192

Query: 120 QTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS 173
           +T+KEIS+I W  L +L     +         K YMV PFLA LKKWI     +
Sbjct: 193 RTRKEISKIEWHNLMDLPTFKKN--KPQTMKNKFYMVIPFLAPLKKWIKKRNIA 244

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score =  165 bits (420), Expect = 2e-52
 Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 26  KVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 85
           K  +PV GA I +E   + +LV+G +  SWSFPRGK +KDE D  C IREV+EE GFD++
Sbjct: 1   KKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLT 60

Query: 86  KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVIS 145
             ++ ++FIE+    +  ++++I+GV +   F PQ + EI +I W    ++         
Sbjct: 61  DYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYK--- 117

Query: 146 HGVTGLKLYMVAPFLASLKKWISAHK 171
              + +K Y++   +  L  W+   +
Sbjct: 118 ---SNIKYYLINSMMRPLSMWLRHQR 140

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 77.7 bits (191), Expect = 8e-18
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 9   RPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS--WSFPRGKKNKDE 66
                  ++++    S++V V      + DE+  + ++V+        W FP G    +E
Sbjct: 9   SGVDLGTENLYFQSMSHQVGV---AGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEE 65

Query: 67  EDHACAIREVQEETGFDV--SKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKE 124
           +    A+REV EETG       +L+  +         +  +YII  ++  +      ++E
Sbjct: 66  DIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEE 125

Query: 125 ISEIAWQRLDEL 136
                W  L++L
Sbjct: 126 CLRCEWMDLNDL 137

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 11/112 (9%)

Query: 33  GAIIL---DETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN 89
           G +I        E  +L   +    W+ P+G  +  E++   AIRE +EE      +L  
Sbjct: 7   GLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTI 66

Query: 90  KDEFIEKIF-----GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
            ++  E +F       + V+ + +A + +          E     W  L++ 
Sbjct: 67  HEDCHETLFYEAKGKPKSVKYW-LAKLNNPDDVQLSH--EHQNWKWCELEDA 115

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 65.4 bits (160), Expect = 7e-14
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 33  GAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNK 90
           G ++ +   E  +L+   +   W FP+G     E     A+REV EETG     L  L  
Sbjct: 6   GGVVFNAKRE--VLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYP 63

Query: 91  DEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
             ++     ++ V  +++ G       AP+ ++ ++   W   +E 
Sbjct: 64  TRYVNPKGVEREVHWFLMRGE-----GAPRLEEGMTGAGWFSPEEA 104

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 63.8 bits (155), Expect = 7e-13
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 29  VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 88
                AII     +  ++    +G  ++ P GK N+ E      IRE++EETG  ++ + 
Sbjct: 16  ARRATAIIEMP--DGVLVTA-SRGGRYNLPGGKANRGELRSQALIREIREETGLRINSM- 71

Query: 89  NKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
               ++             +   +      P+ + EI  IA     + 
Sbjct: 72  ---LYLFDHITPFNAHKVYLCIAQGQ----PKPQNEIERIALVSSPDT 112

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 63.3 bits (154), Expect = 7e-13
 Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 9/130 (6%)

Query: 24  SYKVRVPVTGAIILDETYERCILV---KGWKGSSWSFPRGKKNKDEEDHACAIREVQEET 80
           ++K  V V  A+I  +  ++ +LV           + P G     E       REV EET
Sbjct: 4   TWKPNVTV-AAVIEQD--DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEET 60

Query: 81  GFDVS--KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138
           G       L     +     G   +R      V             I   AW  +DE++ 
Sbjct: 61  GHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKL-DTGIVRAAWFSIDEIRA 119

Query: 139 ASDDVISHGV 148
                 +  V
Sbjct: 120 KQAMHRTPLV 129

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 30  PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN 89
                 + +   E  +L        W+ P+G     E+D   A+R  QEE G +  +L  
Sbjct: 18  RCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTI 77

Query: 90  KDEFIEKIF-----GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
            + F  ++        + V  ++      D         E     W  L+E 
Sbjct: 78  IEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLS--HEHQAYRWLGLEEA 127

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 60.9 bits (148), Expect = 5e-12
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 17  DIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREV 76
           D      +    V    A+I+       +LV   KG  +    G    +E      +REV
Sbjct: 8   DFRTKVDNTVFGVRA-TALIVQN---HKLLVTKDKGK-YYTIGGAIQVNESTEDAVVREV 62

Query: 77  QEETGFDVS--KLLNKDEFIEKIFGQ--QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQR 132
           +EE G      +L    E   ++ G     +  + +  + +D     Q  ++     W  
Sbjct: 63  KEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWID 122

Query: 133 LDEL 136
           LD+L
Sbjct: 123 LDKL 126

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 13/124 (10%)

Query: 20  KDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEE 79
           ++  +Y+ R      I+        +LV+   G+ +  P G+    E       REV EE
Sbjct: 10  EETLTYQTRYAA-YIIVSKPENNTMVLVQAPNGA-YFLPGGEIEGTETKEEAIHREVLEE 67

Query: 80  TGFDV--SKLLNKDEFI-----EKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQR 132
            G  V     L + +        +         Y+    R       +  +  + + W  
Sbjct: 68  LGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQ----LSEPLERTNTLHWVA 123

Query: 133 LDEL 136
            +E 
Sbjct: 124 PEEA 127

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 58.7 bits (142), Expect = 4e-11
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 25  YKVRVPVTGAIILDETYERCILVK-------GWKGSSWSFPRGKKNKDEEDHACAIREVQ 77
             V +   G ++L+E     +LV+         K   W  P G     E     A+RE  
Sbjct: 9   VPVELRAAGVVLLNER-GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREAC 67

Query: 78  EETGFDVSKLLNKDEFIEKI-FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           EETG  V  +     ++ +   G   +R   +A        AP    EI+E ++   ++ 
Sbjct: 68  EETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDF 127

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 58.2 bits (141), Expect = 9e-11
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 12/114 (10%)

Query: 29  VPVTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84
             VT  I++D   ++ +L++    GW    W  P GK    E       RE  EETG  V
Sbjct: 4   QRVTNCIVVDH--DQVLLLQKPRRGW----WVAPGGKMEAGESILETVKREYWEETGITV 57

Query: 85  S--KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
              +L      +    G+      +      +       +    ++ W++ DE+
Sbjct: 58  KNPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEV 111

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 15/119 (12%)

Query: 26  KVRVPVTGAIILDETYERCILV------KGWKGSSWSFPRGKKNKDEEDHACAIREVQEE 79
           K  +    A+I +E  +   L+             W  P GK N DE       REV EE
Sbjct: 5   KPYIISVYALIRNE--KGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEE 62

Query: 80  TGFDV--SKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           TG  +    +  +  F      +++V   +  G         +   E  E +W  L+++
Sbjct: 63  TGITMVPGDIAGQVNF---ELTEKKVIAIVFDGGYVVA--DVKLSYEHIEYSWVSLEKI 116

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 56.0 bits (135), Expect = 3e-10
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 18/158 (11%)

Query: 29  VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 88
           + VT  ++++    + +LVK  +   + +P G    +E       RE +EETG  V  + 
Sbjct: 1   MIVTSGVLVEN--GKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG 58

Query: 89  NKDEFIEKIFGQQRVRLYIIAGVRDDTA----------FAPQTKKEISEIAWQRLDELQ- 137
                I++   ++ + L I+  V                  +   ++    W  + E+  
Sbjct: 59  FTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDR 118

Query: 138 ----PASDDVISHGVTGL-KLYMVAPFLASLKKWISAH 170
               P    V+S  ++ L +L  ++   A+L+     H
Sbjct: 119 IETFPNVRKVVSLALSTLYRLGKISKLAAALEHHHHHH 156

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 22  FTSYKVRVPVTGAIILDETYERCILVK---GWKGSSWSFPRGKKNKDEEDHACAIREVQE 78
               +      GA I+ +   R +L+K     +   W  P GK +  E       RE++E
Sbjct: 22  MQHTEQPRVGCGAAIVRD--GRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEE 79

Query: 79  ETGFDV--SKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           E G  +  + LL   + I+   G+  V    +A                  + W  LD+L
Sbjct: 80  ELGIALERATLLCVVDHIDAANGEHWVAPVYLAHAFSGEP-RVVEPDRHEALGWFALDDL 138

Query: 137 -QPASDDV 143
            QP +   
Sbjct: 139 PQPLTHAT 146

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 25  YKVRVPVTGAIILDETYERCILVK--GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
           +K  V V   ++  E   + ++V+      + W+ P G    DE     A RE+ EETG 
Sbjct: 2   FKPHVTV-ACVVHAE--GKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGI 58

Query: 83  DVS--KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS 140
                  +   ++I        +R      +       P    +I    W   +E+   +
Sbjct: 59  SAQPQHFIRMHQWIAP-DKTPFLRFLFAIELEQICPTQPH-DSDIDCCRWVSAEEI-LQA 115

Query: 141 DDVISHGV 148
            ++ S  V
Sbjct: 116 SNLRSPLV 123

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 10/113 (8%)

Query: 29  VPVTGAIILDETYERCILVKGWKGS---SWSFPRGKKNKDEEDHACAIREVQEETGFDV- 84
             V  A+ L E  +  +L++  K     SW  P G+    E       REV+EE G    
Sbjct: 20  CYVVLAVFLSEQ-DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCE 78

Query: 85  -SKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
              LL+    +E+        +++          + +   E  + AW     L
Sbjct: 79  PETLLS----VEERGPSWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSL 127

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 15/122 (12%)

Query: 28  RVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
           +  +   +I ++     +L      +G     W+   G     E       RE++EE G 
Sbjct: 27  QRTIVCPLIQND--GCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGE 84

Query: 83  DVSK-------LLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFA-PQTKKEISEIAWQRLD 134
            +           +         G+Q     I       +A        E  + AW + +
Sbjct: 85  QLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPE 144

Query: 135 EL 136
           EL
Sbjct: 145 EL 146

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 31  VTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV-- 84
               +I D   +R ++        + S ++FP G    DE      IRE+ EETG  +  
Sbjct: 10  TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQN 69

Query: 85  SKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
            +L+    +     G+  V  Y             Q+  E  E++W + D++
Sbjct: 70  PQLVGIKNWPLDTGGRYIVICYKATEFSGT----LQS-SEEGEVSWVQKDQI 116

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 52.6 bits (126), Expect = 7e-09
 Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 18/141 (12%)

Query: 16  DDIFKDFTSYKVRVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHA 70
            + F         V +   I+ +       L+     +  +G  W  P G+  KDE   A
Sbjct: 6   QEDFATVVRSTPLVSL-DFIVENS--RGEFLLGKRTNRPAQGY-WFVPGGRVQKDETLEA 61

Query: 71  CAIREVQEETGFDVSKLLNK-----DEFIEKIFGQQRVRL-YIIAGV--RDDTAFAPQTK 122
              R    E G  +     +       F +  F        Y++ G   R          
Sbjct: 62  AFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPD 121

Query: 123 KEISEIAWQRLDELQPASDDV 143
           ++  +  W   D L  ASD+V
Sbjct: 122 EQHDDYRWLTSDAL-LASDNV 141

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 14/158 (8%)

Query: 8   LRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVK-GWKGSSWSFPRGKKNKDE 66
           L  ++   +   + +    ++V V   I++++  E+ +LVK       WS P G+    E
Sbjct: 3   LEGFICKFNRKRRLYIENIMQVRV-TGILIED--EKVLLVKQKVANRDWSLPGGRVENGE 59

Query: 67  EDHACAIREVQEETGFDVSKLLNKDEFIEKIFG-QQRVRLYIIAGVRDDTAFAPQT---K 122
                 IRE++EETG +V K+       +K       + +  +    +     P      
Sbjct: 60  TLEEAMIREMREETGLEV-KIKKLLYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDH 118

Query: 123 KEISEIAWQRLDEL-----QPASDDVISHGVTGLKLYM 155
             I ++    ++EL          ++IS G+     Y 
Sbjct: 119 NPIHDVQMVPINELSYYGFSETFINLISGGLANAGSYQ 156

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 14  HIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAI 73
            ++ +F   T Y+       A++     E+ + VK      W+ P G  +        A 
Sbjct: 53  VVEKLFASETGYQTPKVDIRAVVFQN--EKLLFVKEKSDGKWALPGGWADVGYTPTEVAA 110

Query: 74  REVQEETGFDV--SKLL---NKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEI 128
           +EV EETG++V   KLL   +K++           +++I   +        +T  E  E+
Sbjct: 111 KEVFEETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGE---KKTSIETEEV 167

Query: 129 AWQRLDEL 136
            +   +EL
Sbjct: 168 EFFGENEL 175

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 53.7 bits (128), Expect = 1e-08
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 55 WSFPRGKKNKDEEDHACAIREVQEETGFDV 84
          WS+P+GK  ++E     A+RE+ EETG  V
Sbjct: 51 WSWPKGKLEQNETHRHAAVREIGEETGSPV 80

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 28  RVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
           ++ +   II +E     I +          +   FP GK    E      +RE+QEE G 
Sbjct: 3   KLQIAVGIIRNE--NNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60

Query: 83  DVSKLLNKDEFIEKIFGQQRVRL--YIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
                 +  E +E  F  + + L  +++     +    P   KE     W  L  L
Sbjct: 61  TPQH-FSLFEKLEYEFPDRHITLWFWLVERWEGE----PW-GKEGQPGEWMSLVGL 110

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 21/150 (14%), Positives = 55/150 (36%), Gaps = 16/150 (10%)

Query: 6   DVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKD 65
           ++    +    DI        +    + A  +++   + +++     +SW++  G  + +
Sbjct: 24  ELFLRCLNDFHDILT--RDNTIAHLTSSAFAVNKERNKFLMIHHNIYNSWAWTGGHSDNE 81

Query: 66  EEDHACAIREVQEETGF-------------DVSKLLNKDEFIEKIFGQQRVRLYIIAGVR 112
           ++    AI+E++EETG              DV  +    +  + +     + L  +    
Sbjct: 82  KDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECS 141

Query: 113 DDTAFAPQTKKEISEIAWQRLDELQPASDD 142
           +D     +   E S + W   +E+     +
Sbjct: 142 EDETLMLKE-DENSGVMWIPFNEISKYCSE 170

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 7/118 (5%)

Query: 21  DFTSYKVRVPVTGAIILDETYERCIL--VKGWKGSSWSFPRGKKNKDEEDHACAIREVQE 78
           D   YK R      +      E  +L          W  P G    +EE    A+REV E
Sbjct: 35  DGDGYKKRA---ACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCE 91

Query: 79  ETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           E G     L       E    + R  +Y++  V +       +     +  W ++++ 
Sbjct: 92  EAGVKG-TLGRLVGIFENQERKHRTYVYVLI-VTEVLEDWEDSVNIGRKREWFKIEDA 147

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 26  KVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 85
             +V V   I  +  Y+   ++       W F  G    +E     A RE  EE   DV 
Sbjct: 5   PFQVLVIPFIKTEANYQ-FGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVD 63

Query: 86  KLL----NKDEFIEKIFGQQRVRL---YIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
             +    +        F   +  +   Y  A      ++      E SE+ W   +  
Sbjct: 64  VKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESA 121

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 20/115 (17%)

Query: 30  PVTGAIILDETYERCILVK---GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 86
            + G I   E   + +L K         W+ P G    +E     A RE  EE    V  
Sbjct: 41  VIVGCIPEWE--NKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVE- 97

Query: 87  LLNKDEFIEKIFGQQRVR----LYIIAGVR-DDTAFAPQTKKEISEIAWQRLDEL 136
                  I +++    +     +Y++   +  D  F P    E  E+      E+
Sbjct: 98  -------IRELYAVYSLPHISQVYMLFRAKLLDLDFFPGI--ESLEVRLFGEQEI 143

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 31 VTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 86
          VT  ++ D   +R ++       WK    SFP G     E     AIREV EETG  +S 
Sbjct: 12 VTMVMVTDPETQRVLVEDKVNVPWKAG-HSFPGGHVEVGEPCATAAIREVFEETGLRLSG 70

Query: 87 L 87
          +
Sbjct: 71 V 71

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 15  IDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIR 74
           + D+F + T Y+     T A I  E  ++ +LV+   G  WS P G  + D+      ++
Sbjct: 56  VKDLFCNETGYQTPKLDTRAAIFQE--DKILLVQENDGL-WSLPGGWCDVDQSVKDNVVK 112

Query: 75  EVQEETGFDV--SKLL---NKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIA 129
           EV+EE G DV   +++   +K +        +  +++I+  +        Q   E     
Sbjct: 113 EVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGE---FQPNSETVASG 169

Query: 130 WQRLDEL 136
           +  LD+L
Sbjct: 170 FFSLDDL 176

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 28  RVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
            + V  AII  +     IL+     +  +   W F  GK   DE      +RE++EE G 
Sbjct: 8   MIEVVAAIIERD---GKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGI 64

Query: 83  DVSKLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           +   +       ++    + + L+         T  A     E   + W   +E 
Sbjct: 65  EA-TVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQA----HEHQALVWCSPEEA 114

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 28  RVPVTGAIILDETYERCILVK------GWKGSSWSFPRGKKNKDEEDHACAIREVQEETG 81
            + V  A+I     E+ + V+       +    + FP GK  + E       RE+ EE  
Sbjct: 5   SIEVVAAVIRLG--EKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMD 62

Query: 82  FDVSKLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           + + ++  K   +   +    + ++  +              KE     W    E+
Sbjct: 63  YVI-EVGEKLLTVHHTYPDFEITMHAFLCHPVGQRYVL----KEHIAAQWLSTREM 113

>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1 Length = 95

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 1  MFNSCDVLRPYVAHIDDIFKDFTSYKVR 28
          +F  C +L  +    ++ F DF  YK R
Sbjct: 68 LFAHCPLLWKWSKVHEEAFDDFLRYKTR 95

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 28  RVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
            + VT A ++D   +  +L+            W FP GK    E   A  +RE+ EE G 
Sbjct: 7   ILLVTAAALIDP--DGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGV 64

Query: 83  DVS-KLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLDELQ--- 137
           D     L    F    +    + + +         A A    +E   +AW R + L+   
Sbjct: 65  DTRASCLAPLAFASHSYDTFHLLMPLYACRSWRGRATA----REGQTLAWVRAERLREYP 120

Query: 138 -PASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS 173
            P +D                P +  L+ W+  H   
Sbjct: 121 MPPAD---------------LPLIPILQDWLEGHHHH 142

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 25/154 (16%), Positives = 42/154 (27%), Gaps = 33/154 (21%)

Query: 26  KVRVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEET 80
              +PV    +  +     ILV            W FP GK    E       RE+ EE 
Sbjct: 19  GHWIPVVAGFLRKD---GKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEEL 75

Query: 81  GFDVSKLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLDELQ-- 137
           G +  ++          +G   + +             A    K    + W   +EL+  
Sbjct: 76  GIEA-EVGELKLACTHSYGDVGILILFYEILYWKGEPRA----KHHMMLEWIHPEELKHR 130

Query: 138 --PASDDVISHGVTGLKLYMVAPFLASLKKWISA 169
             P ++                  L  + K +  
Sbjct: 131 NIPEAN---------------RKILHKIYKALGL 149

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 16/119 (13%)

Query: 26  KVRVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEET 80
            + + V  A++  +     +L+            W FP GK  + E   A  IRE++EE 
Sbjct: 27  SLLIVVACALLDQD---NRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEEL 83

Query: 81  GFDVSKL-LNKDEFIEKIFGQQRVRL--YIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           G  V    L    F    +    + +  Y  +  +       Q  +E   + W  +++L
Sbjct: 84  GVHVQADNLFPLTFASHGYETFHLLMPLYFCSHYKGV----AQ-GREGQNLKWIFINDL 137

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 46.5 bits (110), Expect = 9e-07
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 23/132 (17%)

Query: 31  VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 90
                I+ +  ++ +L    K        G    +E      IRE +EE G +V+     
Sbjct: 8   TVSVFIVCK--DKVLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPI 65

Query: 91  DEFIEKIFGQQRVRLYII--------------------AGVRDDTAFAPQTKKEISEIAW 130
           D  ++K       +L I                              +P+   E   + W
Sbjct: 66  DINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEI-GESKILKW 124

Query: 131 QRLDELQPASDD 142
              ++L+ A + 
Sbjct: 125 YSKEDLKNAHNI 136

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 7/105 (6%)

Query: 55  WSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIEKIFGQQRVRLYIIAGVR 112
           W+ P G  +++E     A RE++EET             +   +      +     A V 
Sbjct: 69  WAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAIVP 128

Query: 113 DDTAFAPQTKKEISEIAWQRLDELQP---ASD--DVISHGVTGLK 152
            +         + +EI    + E      A D  D++    + + 
Sbjct: 129 PEALEKRAAGDDAAEIGLFPMTEALELPLAFDHLDMLKKAFSAIT 173

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 31 VTGAIILDETYERCILVK---GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 87
           T  ++L    +R +L     G+    W+   GK  + E     A RE+QEE+G  V  L
Sbjct: 27 YTLVLVLQP--QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDAL 84

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 14/116 (12%)

Query: 29  VPVTGAIIL---DETYERCILVK-GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84
           +  T  II     E ++  +L++  +     + P G     E     A RE++EETG +V
Sbjct: 9   LLATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEV 68

Query: 85  SKLLNKDEFIEKIFGQ----QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
                  + +  ++       R  +  +     D    P+   +  ++   RL+E+
Sbjct: 69  RLH----KLM-GVYSDPERDPRAHVVSVV-WIGDAQGEPKAGSDAKKVKVYRLEEI 118

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 33  GAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 87
             +I+    +  IL++    G +     F +G  +  E  +  A RE++EE GF  + L
Sbjct: 51  AVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDL 109

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 16/147 (10%)

Query: 25  YKVRVPVTGAIILDETYE-RCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEE 79
                PV  + +L  T     +LV+             P GK ++ E   A A RE++EE
Sbjct: 35  VYRPGPVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREE 94

Query: 80  TGFDVSKLLNKDEFIEKI-----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLD 134
            G +   L      +        F       ++    R  T      + E+ E     L 
Sbjct: 95  VGAEAETL----IPLPSFHPQPSFTAVVFHPFLALKARVVTP-PTLEEGELLESLELPLT 149

Query: 135 ELQPA-SDDVISHGVTGLKLYMVAPFL 160
           E+    +   I    T L L+   P L
Sbjct: 150 EVYALLAKGEIQDASTALTLFYAEPHL 176

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 80/206 (38%)

Query: 6   DVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKD 65
           D+L  +    D    +F    V           +   + IL                +K+
Sbjct: 20  DILSVFE---DAFVDNFDCKDV-----------QDMPKSIL----------------SKE 49

Query: 66  EEDHACAIREVQEETGFDVSKLLNKDE-----FIE------------------------- 95
           E DH    ++    T      LL+K E     F+E                         
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 96  KIFGQQRVRLYIIAGVRDDTAFAPQT---KKEISEIAWQRLDELQPASDDVISHGVTGL- 151
           +++ +QR RLY      D+  FA       +   ++  Q L EL+PA  +V+  GV G  
Sbjct: 110 RMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLR-QALLELRPA-KNVLIDGVLGSG 162

Query: 152 KLYMVAPFLASLKK---------WIS 168
           K ++      S K          W++
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLN 188

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 65  DEEDHACAIREVQEETGFDVSKLLNKDEF-----IEKIFGQQRVRLYIIAGVRDDTAFAP 119
           DE+    A RE +EE G          +F       +++G     L+          FA 
Sbjct: 78  DEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGA----LFS---CVSHGPFAL 130

Query: 120 QTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYM 155
           Q + E+SE+ W   +E+    D+     +  L L+M
Sbjct: 131 Q-EDEVSEVCWLTPEEITARCDEFTPDSLKALALWM 165

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 11 YVAHIDDIFKDFTSYKVRVPVTGAII-LDETYERCILVKGW----KGSSWSFPRGKKNKD 65
          Y   I ++  +     V      A+I L E   R + V+        +    P G     
Sbjct: 15 YRGRILNLALEGRYEIVEHKPAVAVIALRE--GRMLFVRQMRPAVGLAPLEIPAGLIEPG 72

Query: 66 EEDHACAIREVQEETGF 82
          E+    A RE+ E+TG 
Sbjct: 73 EDPLEAARRELAEQTGL 89

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 34  AIILD-ETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 87
            ++     YE  +LVK       G    FP G  +  E   A A+RE++EETG+     
Sbjct: 68  PVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIA 126

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 14/149 (9%)

Query: 1   MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVK----GWKGSSWS 56
                  L     ++ +  + +     +        L    +  ++V+      K   W+
Sbjct: 178 DTQVYQDLVAENNYVIEYKRLWLKAPFKPNFVTVDALVIVNDHILMVQRKAHPGKDL-WA 236

Query: 57  FPRGKKNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIEKIFGQ------QRVR--LYI 107
            P G    DE      IRE+ EET  +++   L   +  EK+F         R    + +
Sbjct: 237 LPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGRTISHVGL 296

Query: 108 IAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
               +  +        +  ++ W  L   
Sbjct: 297 FVFDQWPSLPEINAADDAKDVKWISLGSN 325

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 21/118 (17%)

Query: 29  VPVTGAIILDETYERCILVKGW----KGSSWSFPRGKKNKDEED-HACAIREVQEETGFD 83
           V +              +V  +        W  P G  +   E  H  A RE++EE G  
Sbjct: 49  VAMDDN-------GNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQ 101

Query: 84  VSKLLNKDEFIEKI-----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
            S      + +  +     F  + VR+Y+  G+R+        ++    + W  + E 
Sbjct: 102 ASTW----QVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEA 155

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 30/147 (20%), Positives = 44/147 (29%), Gaps = 31/147 (21%)

Query: 29  VPVT--GAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 86
           +PVT  G  +L   + R       + +      G   K E+  A A RE+ EE G   S+
Sbjct: 11  LPVTAQGEAVLIRQF-R----YPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASE 65

Query: 87  LLNKDEFIEKI-----FGQQRVRLYIIAGVR------DDTAFAPQTKKEISEIAWQRLDE 135
                  +                 +  GV       +DT        E  E     L E
Sbjct: 66  W----VPLPGFYPQPSISGVVFYPLLALGVTLGAAQLEDT--------ETIERVVLPLAE 113

Query: 136 LQPA-SDDVISHGVTGLKLYMVAPFLA 161
           +        I  G + L L+     L 
Sbjct: 114 VYRMLEAGEIQDGPSSLTLWQARGELT 140

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 66  EEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVR-LYIIAGVRDDTAFAPQTKKE 124
           E       RE +EE   ++   L+          Q  +     +  +R D         +
Sbjct: 76  ETYEEAFRREAREELNVEID-ALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFN-PND 133

Query: 125 ISEIAWQRLDELQ 137
           IS   W   + L 
Sbjct: 134 ISGGEWLTPEHLL 146

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 16/90 (17%)

Query: 55  WSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ----QRVRLYII-- 108
            +FP G  +  E     A+RE QEE   D + +         + G+         + +  
Sbjct: 66  IAFPGGSLDAGETPTQAALREAQEEVALDPAAV--------TLLGELDDVFTPVGFHVTP 117

Query: 109 --AGVRDDTAFAPQTKKEISEIAWQRLDEL 136
               +  +     +   E+++I    L EL
Sbjct: 118 VLGRIAPEALDTLRVTPEVAQIITPTLAEL 147

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 13/58 (22%), Positives = 17/58 (29%)

Query: 30  PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 87
           PV   ++L E                    G   + E     A RE  EE G  V + 
Sbjct: 67  PVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRT 124

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 24/62 (38%)

Query: 25 YKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84
          YK  V +   I   +T    +L +      W    G   + E     A+REV+EE   DV
Sbjct: 6  YKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDV 65

Query: 85 SK 86
            
Sbjct: 66 VA 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.94
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.9
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.83
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.81
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.81
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.8
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.8
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.8
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.79
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.79
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.79
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.78
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.78
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.78
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.78
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.77
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.77
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.76
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.76
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.76
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.76
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.76
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.76
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.76
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.76
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.75
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.75
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.75
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.75
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.75
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.75
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.75
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.75
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.74
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.74
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.74
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.74
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.74
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.74
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.73
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.73
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.73
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.73
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.73
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.73
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.73
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.72
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.72
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.72
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.71
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.71
3f13_A	163	Putative nudix hydrolase family member; structural	99.71
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.7
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.7
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.7
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.69
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.68
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.67
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.67
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.66
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.65
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.65
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.64
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.64
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.64
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.63
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.54
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.53
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.48
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.48
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.46
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.43
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.3
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.28
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.24
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.17
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.04

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.94  E-value=1.2e-26  Score=200.79  Aligned_cols=173  Identities=48%  Similarity=0.856  Sum_probs=130.1

Q ss_pred             CCccCccccccccchHHHHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhh
Q 026059            1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEE   79 (244)
Q Consensus         1 ~f~~~~~l~~~~~~~~~~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EE   79 (244)
                      ||.+||.+..|.....+.+..|..|+++++++++|+++.+.++|||++|.+ ++.|.+|||++|+||++++||+||++||
T Consensus        73 ~f~~~~~l~~~~~~~~~~~~~~~~~~~~v~~v~avv~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EE  152 (271)
T 2a6t_A           73 LFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEE  152 (271)
T ss_dssp             HHTTCHHHHHC---CCHHHHHHHHHSCCCCEEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHH
T ss_pred             HhhhhhhhhcccccchhHHHHHHhcCCCCCeEEEEEEECCCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHH
Confidence            588999999898877889999999999999999999987545999999976 7899999999999999999999999999


Q ss_pred             cCCCCCcccccceeeeeeeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhh
Q 026059           80 TGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPF  159 (244)
Q Consensus        80 tGl~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~  159 (244)
                      ||+.+..+..+..+.........+++|.+..........+.+.+|+.++.|++++++.++....  ....+..+++..|+
T Consensus       153 tGl~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~--~~~~~~~~~~~~p~  230 (271)
T 2a6t_A          153 TGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNK--PQTMKNKFYMVIPF  230 (271)
T ss_dssp             HCCCCTTTCCTTCEEEEEETTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC--------CCGGGTTTGGG
T ss_pred             hCCCceeeeeeeeeccCCcCCceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhcC--ccccccchhhhhHH
Confidence            9999987666555554444455677777665443322233356899999999999998853221  11245667889999


Q ss_pred             HHHHHHHHHhcCCCCC
Q 026059          160 LASLKKWISAHKPSIA  175 (244)
Q Consensus       160 ~~~l~~~l~~~~~~~~  175 (244)
                      +.++.+||+.++.++.
T Consensus       231 ~~~L~~wl~~~~~~l~  246 (271)
T 2a6t_A          231 LAPLKKWIKKRNIANN  246 (271)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCcchh
Confidence            9999999998766644

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.1e-23  Score=162.02  Aligned_cols=140  Identities=34%  Similarity=0.752  Sum_probs=103.9

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEE
Q 026059           27 VRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLY  106 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~  106 (244)
                      .++++++++|++.++++|||+++...|.|.+|||+++.|||+.+||+||++||||+.+..+..+..+..........++|
T Consensus         2 ~~i~~~~~~i~~~~~~~vLl~~r~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   81 (146)
T 2jvb_A            2 KSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIF   81 (146)
T ss_dssp             CCSCCEEEEEBCTTSSEEEEECCSSSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEEETTEEEEEE
T ss_pred             ceeEEEEEEEEeCCCCEEEEEEEcCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccccCCceEEEE
Confidence            46777888888875459999998778999999999999999999999999999999988765555544333333445566


Q ss_pred             EEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcCC
Q 026059          107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKP  172 (244)
Q Consensus       107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~~  172 (244)
                      .+..........+...+|+.++.|++++++..+...      .....+++.|++..++.|+.+++.
T Consensus        82 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~------~~~~~~l~~~~~~~l~~~~~~~~~  141 (146)
T 2jvb_A           82 LISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYK------SNIKYYLINSMMRPLSMWLRHQRQ  141 (146)
T ss_dssp             EECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGC------SSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccccCCcCCcchhheeEEeEHHHHHhhhcc------cchhhhhHHHHHHHHHHHHHHhhC
Confidence            554433322223344688999999999999884211      123446778999999999988654

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.83  E-value=4.7e-20  Score=142.96  Aligned_cols=102  Identities=25%  Similarity=0.436  Sum_probs=74.7

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce--eeeeeeC---eEEEE
Q 026059           30 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIFG---QQRVR  104 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~--~~~~~~~---~~~~~  104 (244)
                      -++++||++++  +|||++|. .|.|.||||++|+|||+.+||+||++||||+.+..+..+..  +.....+   ...++
T Consensus         5 ~aag~vv~~~~--~vLL~~r~-~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~   81 (134)
T 3i7u_A            5 FSAGGVLFKDG--EVLLIKTP-SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTVK   81 (134)
T ss_dssp             EEEEEEEEETT--EEEEEECT-TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEECC--EEEEEEeC-CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEEEE
Confidence            35677888764  99999875 68899999999999999999999999999999875444432  2111111   12344


Q ss_pred             EEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          105 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +|.+....+.    +..++|+.++.|++++++.+
T Consensus        82 ~f~~~~~~~~----~~~~~E~~~~~W~~~~e~~~  111 (134)
T 3i7u_A           82 YYLMKYKEGE----PRPSWEVKDAKFFPIKEAKK  111 (134)
T ss_dssp             EEEEEEEEEC----CCCCTTSSEEEEEEHHHHHH
T ss_pred             EEEEEEcCCc----CcCChhheEEEEEEHHHHhh
Confidence            5655554443    33457899999999999976

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.81  E-value=6.8e-19  Score=138.51  Aligned_cols=108  Identities=22%  Similarity=0.220  Sum_probs=80.1

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCe
Q 026059           27 VRVPVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQ  100 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~  100 (244)
                      +...++++++.+.+ ++|||++|..     +|.|.||||++|.||++.+||.||++||||+.+.....+..+... ....
T Consensus         6 ~~~~~v~~vi~~~~-~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~   84 (153)
T 3grn_A            6 PYIISVYALIRNEK-GEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKK   84 (153)
T ss_dssp             CEEEEEEEEEECTT-CCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCE
T ss_pred             ceEEEEEEEEEcCC-CcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCce
Confidence            34455677777766 4999999885     489999999999999999999999999999998865544433222 2333


Q ss_pred             EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          101 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ....+|.+....+.    +....|..++.|++++++.++
T Consensus        85 ~~~~~~~~~~~~~~----~~~~~e~~~~~W~~~~el~~~  119 (153)
T 3grn_A           85 VIAIVFDGGYVVAD----VKLSYEHIEYSWVSLEKILGM  119 (153)
T ss_dssp             EEEEEEEEEECCCC----CCCCTTEEEEEEECHHHHTTC
T ss_pred             EEEEEEEEEecCCc----EecCCCcceEEEEEHHHhhhc
Confidence            44566666554433    223588899999999999874

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.81  E-value=6.9e-19  Score=139.10  Aligned_cols=131  Identities=19%  Similarity=0.295  Sum_probs=87.0

Q ss_pred             ccEEEEEEEe--------CCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee----
Q 026059           29 VPVTGAIILD--------ETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE----   95 (244)
Q Consensus        29 v~vv~~ii~~--------~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~----   95 (244)
                      +.+||+||+.        +++.++||++|.. .+.|.+|||++|+|||+.+||+||++||||+.+.....+..+..    
T Consensus         3 ~ra~G~iifr~~~~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   82 (155)
T 3u53_A            3 LRACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNY   82 (155)
T ss_dssp             -CEEEEEEEEECCCSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEE
T ss_pred             ceEeEEEEEccccccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeeec
Confidence            4578888873        3345999999877 68899999999999999999999999999999876444332211    


Q ss_pred             eeeC-eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcCC
Q 026059           96 KIFG-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKP  172 (244)
Q Consensus        96 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~~  172 (244)
                      .... .....+|++.......  .+..++|+.+++|++++++.++..           +.....++.....+|.....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~ea~~~~~-----------~~~~~~~L~~a~~~L~~~~a  147 (155)
T 3u53_A           83 VARNKPKTVIYWLAEVKDYDV--EIRLSHEHQAYRWLGLEEACQLAQ-----------FKEMKAALQEGHQFLCSIEA  147 (155)
T ss_dssp             EETTEEEEEEEEEEEESCTTC--CCCCCTTEEEEEEECHHHHHHHHC-----------SHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcceeEEEEEEEEEeccCC--ccCCCcceeEEEEeEHHHHHHHcC-----------CHHHHHHHHHHHHHHhCchh
Confidence            1122 2233444444433332  233467999999999999876211           11223456666677765433

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.80  E-value=1.2e-18  Score=134.89  Aligned_cols=107  Identities=20%  Similarity=0.229  Sum_probs=78.8

Q ss_pred             CcccccEEEEEEEe--CCCCE--EEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee--
Q 026059           25 YKVRVPVTGAIILD--ETYER--CILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI--   97 (244)
Q Consensus        25 y~~~v~vv~~ii~~--~~~~k--vLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~--   97 (244)
                      |+....+++++|++  .+ ++  +||++|.. ++.|.+|||++++||++.+||+||++||||+.+.....+..+....  
T Consensus         5 y~~p~~~v~~vi~~~~~~-~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   83 (139)
T 2yyh_A            5 VKTPLLATDVIIRLWDGE-NFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPERD   83 (139)
T ss_dssp             CCCCEEEEEEEEEEEETT-EEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSC
T ss_pred             ccCCeEEEEEEEEEEcCC-CcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCCCcC
Confidence            66766677777776  44 37  99999877 4569999999999999999999999999999987544433332211  


Q ss_pred             -eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEcccccc
Q 026059           98 -FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQ  137 (244)
Q Consensus        98 -~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~  137 (244)
                       ..+....+|.+.. .+.    +...+|+.++.|++++++.
T Consensus        84 ~~~~~~~~~f~~~~-~~~----~~~~~e~~~~~W~~~~el~  119 (139)
T 2yyh_A           84 PRAHVVSVVWIGDA-QGE----PKAGSDAKKVKVYRLEEIP  119 (139)
T ss_dssp             TTSCEEEEEEEEEE-ESC----CCCCTTEEEEEEECTTSCC
T ss_pred             CCceEEEEEEEEec-CCc----cCCCCCcceEEEEEHHHCC
Confidence             1234556666655 332    2346789999999999998

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.80  E-value=8e-19  Score=138.40  Aligned_cols=134  Identities=16%  Similarity=0.166  Sum_probs=90.9

Q ss_pred             Ccccc-cEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCe
Q 026059           25 YKVRV-PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ  100 (244)
Q Consensus        25 y~~~v-~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~  100 (244)
                      +.+++ .++++++.+.+ +++||++|.+   .+.|.+|||++|.||++.+||+||++||||+.+.....+..+..  ...
T Consensus        15 ~~~~~~~~v~~~i~~~~-~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~~   91 (156)
T 3gg6_A           15 LRKNVCYVVLAVFLSEQ-DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEER--GPS   91 (156)
T ss_dssp             CCTTCEEEEEEECBCTT-SEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEES--STT
T ss_pred             cCCceEEEEEEEEEeCC-CEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcC--CCC
Confidence            44433 45556666666 5999999987   68999999999999999999999999999999876544443321  223


Q ss_pred             EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcCC
Q 026059          101 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKP  172 (244)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~~  172 (244)
                      ...++|.+....+.......+++|+.++.|++++++++....           -.+...+.....|+..+..
T Consensus        92 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~-----------~~~~~~l~~~~~~~~~~~~  152 (156)
T 3gg6_A           92 WVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRA-----------HDILHLVELAAQYRQQARH  152 (156)
T ss_dssp             EEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSC-----------THHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccc-----------hhHHHHHHHHHHHhhcCCC
Confidence            455666666554432222224578899999999999873211           1122345556666666543

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.80  E-value=5.8e-19  Score=144.30  Aligned_cols=129  Identities=19%  Similarity=0.068  Sum_probs=90.8

Q ss_pred             CccCccccccccchH----H------HHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCH
Q 026059            2 FNSCDVLRPYVAHID----D------IFKDFTSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEED   68 (244)
Q Consensus         2 f~~~~~l~~~~~~~~----~------~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~   68 (244)
                      |++||.++.......    .      ..+.+..|.....++++|+.++  ++|||++|..   .+.|.||||++|.||++
T Consensus         3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~ii~~~--~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~   80 (189)
T 3cng_A            3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWE--NKVLLCKRAIAPYRGKWTLPAGFMENNETL   80 (189)
T ss_dssp             CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEECCCCEEEEEEEEEET--TEEEEEEESSSSSTTCEECSEEECCTTCCH
T ss_pred             cccCchhCCccccccccCCCCcceECCCCCCccCCCCceEEEEEEEeC--CEEEEEEccCCCCCCeEECceeeccCCCCH
Confidence            688999766543211    0      1122345555556777777774  4999999976   68999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEcccccc
Q 026059           69 HACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQ  137 (244)
Q Consensus        69 ~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~  137 (244)
                      ++||+||++||||+.+.....+..+ .........++|.+....+.    +....|+.++.|++++++.
T Consensus        81 ~~aa~REl~EEtGl~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~----~~~~~E~~~~~W~~~~el~  144 (189)
T 3cng_A           81 VQGAARETLEEANARVEIRELYAVY-SLPHISQVYMLFRAKLLDLD----FFPGIESLEVRLFGEQEIP  144 (189)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEEEEEE-EEGGGTEEEEEEEEEECCSC----CCCCTTEEEEEEECTTTCC
T ss_pred             HHHHHHHHHHHHCCccccceeEEEE-ecCCCcEEEEEEEEEeCCCc----cCCCccceeEEEECHHHcC
Confidence            9999999999999998743222222 22233456667766654432    2236789999999999997

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.79  E-value=1.7e-19  Score=141.15  Aligned_cols=108  Identities=19%  Similarity=0.148  Sum_probs=75.3

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEE
Q 026059           29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV  103 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~  103 (244)
                      -.++++++++.+ +++||+++.+    .+.|+||||++|+|||+++||+||++||||+.+..+..+..+.. .......+
T Consensus         5 ~~~v~vi~~~~~-~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~   83 (145)
T 2w4e_A            5 PRAVFILPVTAQ-GEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVF   83 (145)
T ss_dssp             CEEEEEEEEETT-SEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEE
T ss_pred             CCEEEEEEEcCC-CEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceE
Confidence            346677777776 4898887654    24899999999999999999999999999999886655554332 22234556


Q ss_pred             EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ++|.+...... . ...+++|+.++.|++++++.++
T Consensus        84 ~~f~~~~~~~~-~-~~~~~~E~~~~~w~~~~el~~~  117 (145)
T 2w4e_A           84 YPLLALGVTLG-A-AQLEDTETIERVVLPLAEVYRM  117 (145)
T ss_dssp             EEEEEEEEEEC----------CEEEEEEEHHHHHHH
T ss_pred             EEEEEEecccC-C-CCCCCCCeEEEEEEeHHHHHHH
Confidence            77777644322 1 1234678899999999999873

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.79  E-value=1.1e-18  Score=136.99  Aligned_cols=133  Identities=21%  Similarity=0.267  Sum_probs=87.5

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee--eeeeeCe
Q 026059           25 YKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKIFGQ  100 (244)
Q Consensus        25 y~~~v~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~--~~~~~~~  100 (244)
                      |++++.+ ++++.++  +++||++|..  .+.|.+|||++|.|||+.+||+||++||||+.+.....+..+  .......
T Consensus         2 ~~p~~~v-~~ii~~~--~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   78 (153)
T 3shd_A            2 FKPHVTV-ACVVHAE--GKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTP   78 (153)
T ss_dssp             CCCEEEE-EEEEEET--TEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCC
T ss_pred             CCCceEE-EEEEEeC--CEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCce
Confidence            4445444 5555554  3999999864  678999999999999999999999999999998865444332  2222233


Q ss_pred             EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhh-HHHHHHHHHhcCCCCC
Q 026059          101 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPF-LASLKKWISAHKPSIA  175 (244)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~-~~~l~~~l~~~~~~~~  175 (244)
                      ...++|.+...... . ....+.|+.++.|++++++.....             ...|. ...+..|+..+..++.
T Consensus        79 ~~~~~f~~~~~~~~-~-~~~~~~E~~~~~W~~~~el~~~~~-------------~~~~~~~~~l~~~~~~~~~~l~  139 (153)
T 3shd_A           79 FLRFLFAIELEQIC-P-TQPHDSDIDCCRWVSAEEILQASN-------------LRSPLVAESIRCYQSGQRYPLE  139 (153)
T ss_dssp             EEEEEEEEECSSCC-C-CCCCSTTCCEEEEECHHHHHTCSC-------------BSSTHHHHHHHHHHHTCCBCGG
T ss_pred             EEEEEEEEEccccC-c-CCCCcccceeeEEecHHHhhcccc-------------ccCchHHHHHHHHHhCCccchh
Confidence            34455655544332 1 123467899999999999932110             01133 4567778877665544

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.79  E-value=4.8e-19  Score=146.79  Aligned_cols=122  Identities=20%  Similarity=0.276  Sum_probs=86.8

Q ss_pred             cchHHHHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce
Q 026059           13 AHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE   92 (244)
Q Consensus        13 ~~~~~~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~   92 (244)
                      ..++..++....|.+...+++++|+++  ++|||++|...|.|.+|||++|+||++.+||.||++||||+.+.....+..
T Consensus        52 ~~v~~~~~~~~~~~~~~~~v~~vv~~~--~~vLLv~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~  129 (205)
T 3q1p_A           52 EVVEKLFASETGYQTPKVDIRAVVFQN--EKLLFVKEKSDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAI  129 (205)
T ss_dssp             HHHHHHHSCCCSSCCCEEEEEEEEEET--TEEEEEEC---CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred             HHHHHHHccccCCCCCcceEEEEEEEC--CEEEEEEEcCCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEE
Confidence            345566666677888777778888874  499999988789999999999999999999999999999999875433332


Q ss_pred             eee-----eeeCeE-EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC
Q 026059           93 FIE-----KIFGQQ-RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  140 (244)
Q Consensus        93 ~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  140 (244)
                      +..     .....+ ...+|.+....+.    +..+.|+.++.|+++++|+++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~E~~~~~w~~~~el~~l~  179 (205)
T 3q1p_A          130 FDKEKHQPSPSATHVYKIFIGCEIIGGE----KKTSIETEEVEFFGENELPNLS  179 (205)
T ss_dssp             EEHHHHSCCCCSSCEEEEEEEEEEEEEC----CCCCTTSCCEEEECTTSCCCBC
T ss_pred             EeccccCCCCCCceEEEEEEEEEecCCc----cCCCCcceEEEEEeHHHhhhcC
Confidence            211     112223 3445555444432    2334889999999999998753

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.78  E-value=2.4e-18  Score=136.39  Aligned_cols=108  Identities=19%  Similarity=0.260  Sum_probs=78.5

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee---eCe
Q 026059           27 VRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI---FGQ  100 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~---~~~  100 (244)
                      ....+++++|.++  ++|||++|.+   .+.|.||||++|.||++.+||+||++||||+.+.....+..+....   ...
T Consensus        27 ~~~~~v~~vi~~~--~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  104 (157)
T 4dyw_A           27 QPRVGCGAAIVRD--GRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAANGEH  104 (157)
T ss_dssp             CCEEEEEEEEEET--TEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEETTTTEE
T ss_pred             CceeEEEEEEEEC--CEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeeccCCCcE
Confidence            3444556777774  4999999985   6899999999999999999999999999999987654444333222   222


Q ss_pred             EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          101 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ....+|.+....+..  ...+++|+.++.|++++++.+
T Consensus       105 ~~~~~f~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~  140 (157)
T 4dyw_A          105 WVAPVYLAHAFSGEP--RVVEPDRHEALGWFALDDLPQ  140 (157)
T ss_dssp             EEEEEEEESEEESCC--CCSCTTTEEEEEEEETTSCCS
T ss_pred             EEEEEEEEEEcCCCc--ccCCCCcEeEEEEECHHHccc
Confidence            344566655444331  223457899999999999987

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.78  E-value=1.6e-18  Score=137.33  Aligned_cols=108  Identities=19%  Similarity=0.176  Sum_probs=77.5

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee-------------e
Q 026059           28 RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-------------I   94 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~-------------~   94 (244)
                      +..+++++|.++  ++|||++|...|.|.+|||++|.|||+.+||+||++||||+.+..+..+..+             .
T Consensus         5 ~~~~v~~vi~~~--~~vLL~~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   82 (159)
T 3f6a_A            5 RHFTVSVFIVCK--DKVLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLI   82 (159)
T ss_dssp             SCEEEEEEEEET--TEEEEEECSSSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEEC
T ss_pred             ceEEEEEEEEEC--CEEEEEEcCCCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccccccccccccccccccccc
Confidence            445667777774  4999999988899999999999999999999999999999998754433211             0


Q ss_pred             ee---------eeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC
Q 026059           95 EK---------IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  140 (244)
Q Consensus        95 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  140 (244)
                      .+         ........+|.+....+..   ..+++|+.++.|++++++.++.
T Consensus        83 ~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~~E~~~~~W~~~~el~~~~  134 (159)
T 3f6a_A           83 NPIHTILGDVSPNHSHIDFVYYATTTSFET---SPEIGESKILKWYSKEDLKNAH  134 (159)
T ss_dssp             CCSEEEEECSSSSSCEEEEEEEEECSCSCC---CCCTTSCCCEEEECSSSSTTCS
T ss_pred             CccccccccCCCCceEEEEEEEEEeCCCCc---CCCCCcccceEEeeHHHHhhCc
Confidence            00         0112333556565444331   1246889999999999998853

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.78  E-value=2.8e-18  Score=141.05  Aligned_cols=133  Identities=17%  Similarity=0.299  Sum_probs=81.7

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCC-CCccc----ccceeeeeee----
Q 026059           28 RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFD-VSKLL----NKDEFIEKIF----   98 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~-v~~l~----~~~~~~~~~~----   98 (244)
                      ...+++++|++.++++|||++++..|.|.+|||++|.|||+.+||+||++||||+. +..+.    .+..+.....    
T Consensus        44 ~h~~~~~vv~~~~~~~vLL~~r~~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  123 (197)
T 3fcm_A           44 AHLTSSAFAVNKERNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRG  123 (197)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEETTTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEETT
T ss_pred             ccEEEEEEEEECCCCEEEEEEecCCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCccccC
Confidence            34466788888776699999988889999999999999999999999999999998 44211    1111111100    


Q ss_pred             ----C-eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcCCC
Q 026059           99 ----G-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS  173 (244)
Q Consensus        99 ----~-~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~~~  173 (244)
                          . .+....|.+.... ... ...+.+|+.++.|++++++.++...           ....+++..+.++|+++...
T Consensus       124 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~E~~~~~W~~~~el~~~~~~-----------~~~~~il~~~~~~l~~~~~~  190 (197)
T 3fcm_A          124 KYVSSHLHLNLTYLIECSE-DET-LMLKEDENSGVMWIPFNEISKYCSE-----------PHMIPIYEKLINKLKTQSKE  190 (197)
T ss_dssp             EEECCEEEEEEEEEEECCT-TSC-CCCCC----CEEEEEGGGHHHHCCC-----------GGGHHHHHHHHHHHHC----
T ss_pred             cccCCceeEEEEEEEEeCC-Ccc-cCCCcccccceEEccHHHHHhhcCC-----------HHHHHHHHHHHHHHHhcccc
Confidence                0 1122344443322 211 1234678999999999999874221           12335677777777765433

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.77  E-value=3.5e-18  Score=132.47  Aligned_cols=106  Identities=18%  Similarity=0.158  Sum_probs=77.6

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC------CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeC
Q 026059           27 VRVPVTGAIILDETYERCILVKGWK------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFG   99 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~------~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~   99 (244)
                      ..+.++++|+.++  +++||++|..      +|.|.||||+++.||++.+||.||++||||+.+.....+..+.. ....
T Consensus         4 ~~~~~v~~vi~~~--~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~   81 (140)
T 3gwy_A            4 KSIEVVAAVIRLG--EKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDF   81 (140)
T ss_dssp             SCEEEEEEEEEET--TEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSC
T ss_pred             eEEEEEEEEEEeC--CEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCc
Confidence            4566777788774  4999999875      36899999999999999999999999999999876544443222 1233


Q ss_pred             eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          100 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ...+++|.+....+.    + ...|..++.|++++++.++
T Consensus        82 ~~~~~~f~~~~~~~~----~-~~~E~~~~~W~~~~el~~~  116 (140)
T 3gwy_A           82 EITMHAFLCHPVGQR----Y-VLKEHIAAQWLSTREMAIL  116 (140)
T ss_dssp             CEEEEEEEEEECCSC----C-CCCSSCEEEEECHHHHTTS
T ss_pred             eEEEEEEEEEecCCc----c-cccccceeEeccHHHHhhC
Confidence            455667766654432    2 2468889999999999874

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.76  E-value=8.5e-19  Score=143.77  Aligned_cols=126  Identities=15%  Similarity=0.194  Sum_probs=87.3

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----------CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-e
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-K   96 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----------~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~   96 (244)
                      +..++++++++.+.+++||+++.+          .+.|++|||++| ||++++||+||++||||+.+..+..+..+.. .
T Consensus        44 ~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~  122 (191)
T 3o6z_A           44 RGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSP  122 (191)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCT
T ss_pred             cCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCC
Confidence            455677777775446999999873          468999999999 9999999999999999999987766665433 3


Q ss_pred             eeCeEEEEEEEEEeecCCCCc-CCCCCCceeeEEEEccccccCC--Ccccc-ccccchhhhh
Q 026059           97 IFGQQRVRLYIIAGVRDDTAF-APQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY  154 (244)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~~~~~W~~~~el~~~--~~~~~-~~~~~a~~~~  154 (244)
                      ......+++|.+......... ....++|+.++.|++++++.++  .+++. ++++.++.++
T Consensus       123 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~d~~t~~al~~~  184 (191)
T 3o6z_A          123 GGVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTGEIRDGKTVLLLNYL  184 (191)
T ss_dssp             TTBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHHHHHHSSCCBHHHHHHHHHH
T ss_pred             CccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            344566777877654322110 0112678899999999999883  34454 5565555443

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.76  E-value=5.2e-18  Score=131.60  Aligned_cols=108  Identities=26%  Similarity=0.315  Sum_probs=78.0

Q ss_pred             cccccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc--cccceeeee-ee
Q 026059           26 KVRVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNKDEFIEK-IF   98 (244)
Q Consensus        26 ~~~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l--~~~~~~~~~-~~   98 (244)
                      .+.+.++++++.+.+ +++||++|..    .|.|.||||+++.||++.+||.||++||||+.+...  ..+..+... ..
T Consensus         5 ~~~~~~~~~vi~~~~-~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   83 (144)
T 3r03_A            5 LPILLVTAAALIDPD-GRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDT   83 (144)
T ss_dssp             -CEEEEEEEEEBCTT-SCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS
T ss_pred             CceeEEEEEEEEcCC-CEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCC
Confidence            445566677777766 4899999885    489999999999999999999999999999998854  333222221 23


Q ss_pred             CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ....+++|.+....+.     ....|..++.|++++++.++
T Consensus        84 ~~~~~~~~~~~~~~~~-----~~~~e~~~~~W~~~~el~~~  119 (144)
T 3r03_A           84 FHLLMPLYACRSWRGR-----ATAREGQTLAWVRAERLREY  119 (144)
T ss_dssp             SEEEEEEEEECCCBSC-----CCCCSSCEEEEECGGGGGGS
T ss_pred             eEEEEEEEEEEecCCc-----cCCCCcceEEEEeHHHhccC
Confidence            3344566655443332     22567789999999999874

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.76  E-value=5e-18  Score=132.80  Aligned_cols=116  Identities=16%  Similarity=0.109  Sum_probs=77.4

Q ss_pred             CEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccc-ccceeee--------eeeCeEEEEEEEEEeec
Q 026059           42 ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL-NKDEFIE--------KIFGQQRVRLYIIAGVR  112 (244)
Q Consensus        42 ~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~-~~~~~~~--------~~~~~~~~~~~~~~~~~  112 (244)
                      +++||++|...|.|.+|||++|+||++.+||+||++||||+.+.... .+.....        ........++|.+....
T Consensus        20 ~~vLl~~r~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~   99 (149)
T 3son_A           20 YQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTS   99 (149)
T ss_dssp             EEEEEEEESSSSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSSCSEEEEEEEEEECTT
T ss_pred             eEEEEEEEcCCCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCCceEeEEEEEEEEcCC
Confidence            59999999888999999999999999999999999999999987521 1111100        11123345566665442


Q ss_pred             CCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhc
Q 026059          113 DDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAH  170 (244)
Q Consensus       113 ~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~  170 (244)
                      ....  +..+.|+.++.|++++++.++...           ......+..+..+++.+
T Consensus       100 ~~~~--~~~~~E~~~~~W~~~~el~~~~~~-----------~~~~~~l~~~~~~l~~~  144 (149)
T 3son_A          100 CSYQ--VTLSLEHSELRWVSYESAIQLLEW-----------DSNKTALYELNERLKNN  144 (149)
T ss_dssp             TGGG--CCCCTTEEEEEEECHHHHHHHCCC-----------HHHHHHHHHHHHHHHTT
T ss_pred             CCCc--ccCCCceeeEEEeCHHHHHHHhcC-----------HHHHHHHHHHHHHHhhc
Confidence            1111  222588999999999999873211           11223456666666554

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.76  E-value=5.1e-18  Score=128.70  Aligned_cols=102  Identities=22%  Similarity=0.363  Sum_probs=76.7

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEEEEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRVRLYIIA  109 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~~~~~~~  109 (244)
                      ++++++++.++ ++||++|.. |.|.+|||+++.||++.+||.||++||||+.+.....+..+... ......+.+|.+.
T Consensus         4 ~~~~vi~~~~~-~vLl~~r~~-g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
T 1vcd_A            4 GAGGVVFNAKR-EVLLLRDRM-GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFLM   81 (126)
T ss_dssp             EEEEEEECTTS-CEEEEECTT-SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEEEEEEcCCC-EEEEEEECC-CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEEEEEEE
Confidence            45677777664 899999876 89999999999999999999999999999998765444433221 2233455666665


Q ss_pred             eecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          110 GVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       110 ~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ...+.    ...+.|+.++.|++++++.+
T Consensus        82 ~~~~~----~~~~~e~~~~~w~~~~el~~  106 (126)
T 1vcd_A           82 RGEGA----PRLEEGMTGAGWFSPEEARA  106 (126)
T ss_dssp             EEESC----CCCCTTCCEEEEECHHHHHH
T ss_pred             EcCCC----CCCCcceeeeEEcCHHHHHH
Confidence            54433    23457889999999999976

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.76  E-value=1.2e-17  Score=128.60  Aligned_cols=106  Identities=19%  Similarity=0.315  Sum_probs=73.8

Q ss_pred             cEEEEEEEeCC--CCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccc----ceeeeee-eCeE
Q 026059           30 PVTGAIILDET--YERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK----DEFIEKI-FGQQ  101 (244)
Q Consensus        30 ~vv~~ii~~~~--~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~----~~~~~~~-~~~~  101 (244)
                      .++++++++.+  .+++||++|+. ++.|.+|||++++||++.+||+||++||||+.+..+..+    ..+.... ..+.
T Consensus         4 ~~~~~vi~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   83 (138)
T 1ktg_A            4 KAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPK   83 (138)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEE
T ss_pred             EEEEEEEEEecCCCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCCCce
Confidence            45566666542  24899999875 679999999999999999999999999999976643322    1111111 1234


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .+++|.+......   ....++|+.++.|++++++.+
T Consensus        84 ~~~~f~~~~~~~~---~~~~~~e~~~~~W~~~~el~~  117 (138)
T 1ktg_A           84 SVKYWLAKLNNPD---DVQLSHEHQNWKWCELEDAIK  117 (138)
T ss_dssp             EEEEEEEEECSCC---CCCCCTTEEEEEEECHHHHHH
T ss_pred             EEEEEEEEecCCc---ccCCCchhcEeEeccHHHHHH
Confidence            4556655543322   233467899999999999987

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.76  E-value=1.7e-17  Score=130.80  Aligned_cols=110  Identities=20%  Similarity=0.344  Sum_probs=79.5

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC-------CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-ee-
Q 026059           28 RVPVTGAIILDETYERCILVKGWK-------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IF-   98 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~-------~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~-   98 (244)
                      ...++++++++.+ +++||++|.+       .+.|.||||++|.||++.+||+||++||||+.+..+..+..+... .. 
T Consensus        12 ~~~~~~~vi~~~~-~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~   90 (159)
T 1sjy_A           12 ELRAAGVVLLNER-GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDG   90 (159)
T ss_dssp             CEEEEEEEEBCTT-CCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTS
T ss_pred             EEEeEEEEEEeCC-CCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCCC
Confidence            3456667777765 4899999883       589999999999999999999999999999998765544433321 12 


Q ss_pred             CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ....+++|.+....+. ...+.+.+|+.++.|++++++.++
T Consensus        91 ~~~~~~~f~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~  130 (159)
T 1sjy_A           91 VLILRHVWLAEPEPGQ-TLAPAFTDEIAEASFVSREDFAQL  130 (159)
T ss_dssp             CEEEEEEEEEEECSSC-CCCCCCCSSEEEEEEECHHHHHHH
T ss_pred             ceEEEEEEEEEccCCC-ccccCCCCceeEEEEecHHHHHHh
Confidence            3345666666553332 122214678999999999999873

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.76  E-value=2.2e-18  Score=148.75  Aligned_cols=132  Identities=19%  Similarity=0.162  Sum_probs=93.9

Q ss_pred             CccCccccccccchHH------HHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHH
Q 026059            2 FNSCDVLRPYVAHIDD------IFKDFTSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAI   73 (244)
Q Consensus         2 f~~~~~l~~~~~~~~~------~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~   73 (244)
                      +++||.++......++      .-+.+..|+...+++.+++.++  ++|||++|..  .|.|++|||++|.|||+++||+
T Consensus       107 ~~fC~~CG~~~~~~~~~~~~~C~~C~~~~yp~~~~~viv~v~~~--~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~  184 (269)
T 1vk6_A          107 HKYCGYCGHEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRD--DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVA  184 (269)
T ss_dssp             TSBCTTTCCBEEECSSSSCEEESSSSCEECCCCEEEEEEEEEET--TEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHH
T ss_pred             CCccccCCCcCccCCCceeeeCCCCCCEecCCCCcEEEEEEEeC--CEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHH
Confidence            5678887654422211      1133456666666655556554  4999999876  6899999999999999999999


Q ss_pred             HHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           74 REVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        74 REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ||++||||+.+..+..+..+.. .+.+..+.+|.+....+..   ..+.+|+.++.|+++++++.+
T Consensus       185 REv~EEtGl~v~~~~~~~~~~~-~~~~~~~~~f~a~~~~~~~---~~~~~E~~~~~W~~~~el~~l  246 (269)
T 1vk6_A          185 REVMEESGIKVKNLRYVTSQPW-PFPQSLMTAFMAEYDSGDI---VIDPKELLEANWYRYDDLPLL  246 (269)
T ss_dssp             HHHHHHHCCEEEEEEEEEEEEE-ETTEEEEEEEEEEEEECCC---CCCTTTEEEEEEEETTSCCSC
T ss_pred             HHHHHHhCceeeeEEEEEEEec-CCCCEEEEEEEEEECCCCc---CCCCcceEEEEEEEHHHhhhc
Confidence            9999999999987665554332 3444566677776544431   234678999999999999874

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.76  E-value=3e-18  Score=141.20  Aligned_cols=109  Identities=21%  Similarity=0.291  Sum_probs=71.3

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee--eeeeeCeEEEEE
Q 026059           30 PVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKIFGQQRVRL  105 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~--~~~~~~~~~~~~  105 (244)
                      ..|++++++.++++|||++|+.  .+.|.+|||++|+||++.+||+||++||||+.+.....+...  ...........+
T Consensus        27 v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~~~~  106 (199)
T 3h95_A           27 VGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDM  106 (199)
T ss_dssp             CEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC---------CE
T ss_pred             ceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCCCceeEEE
Confidence            3445555555445999999877  799999999999999999999999999999998743222211  111111122233


Q ss_pred             EEEEee-cCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          106 YIIAGV-RDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       106 ~~~~~~-~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      |++... ..... ...++.|+.++.|++++++.++
T Consensus       107 ~~~~~~~~~~~~-~~~~~~E~~~~~W~~~~el~~~  140 (199)
T 3h95_A          107 YIICRLKPYSFT-INFCQEECLRCEWMDLNDLAKT  140 (199)
T ss_dssp             EEEEEEEESCCC-CCCCTTTEEEEEEEEHHHHHHC
T ss_pred             EEEEEEcCCCcc-cCCCccceeeeEEEeHHHHhhh
Confidence            333333 22222 2234689999999999999874

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.75  E-value=3.1e-18  Score=142.02  Aligned_cols=121  Identities=23%  Similarity=0.302  Sum_probs=77.9

Q ss_pred             cchHHHHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce
Q 026059           13 AHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE   92 (244)
Q Consensus        13 ~~~~~~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~   92 (244)
                      ..++..++....|.+...+++++|+++  ++|||++|. .+.|.||||++|.||++.+||.||++||||+.+.....+..
T Consensus        54 ~~~~~~~~~~~~y~~~~~~v~~vv~~~--~~vLLvrr~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~  130 (206)
T 3o8s_A           54 EVVKDLFCNETGYQTPKLDTRAAIFQE--DKILLVQEN-DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAI  130 (206)
T ss_dssp             --------------CCEEEEEEEEEET--TEEEEEECT-TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             HHHHHHhccccCCCCCCccEEEEEEEC--CEEEEEEec-CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEE
Confidence            345667777778887776777777776  399999988 89999999999999999999999999999999875444433


Q ss_pred             eee-----eeeC-eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC
Q 026059           93 FIE-----KIFG-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  140 (244)
Q Consensus        93 ~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  140 (244)
                      +..     .... +....+|.+....+.    +..+.|+.++.|+++++|+++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~E~~~~~w~~~~el~~l~  180 (206)
T 3o8s_A          131 LDKHKNNPAKSAHRVTKVFILCRLLGGE----FQPNSETVASGFFSLDDLPPLY  180 (206)
T ss_dssp             EEHHHHCC-----CEEEEEEEEEEEEEC----CCCCSSCSEEEEECTTSCCCBC
T ss_pred             EeccccCCCCCCceEEEEEEEEEecCCe----ecCCCCceEEEEEeHHHhhhcc
Confidence            211     1112 233445555444432    2334789999999999999853

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.75  E-value=1.7e-18  Score=143.95  Aligned_cols=128  Identities=13%  Similarity=0.069  Sum_probs=88.9

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC---C------CcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-ee
Q 026059           28 RVPVTGAIILDETYERCILVKGWK---G------SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KI   97 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~---~------~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~   97 (244)
                      +..+|++++++.+.+++||+++.+   .      +.|++|||++|+||++++||+||++||||+.+..+..+..+.. +.
T Consensus        56 ~~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g  135 (209)
T 1g0s_A           56 RGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPG  135 (209)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTT
T ss_pred             CCCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCC
Confidence            445777787874335999998765   1      5799999999999999999999999999999987766665432 23


Q ss_pred             eCeEEEEEEEEEeecCCC-C-cCCCCCCceeeEEEEccccccCC--Ccccc-ccccchhhhhh
Q 026059           98 FGQQRVRLYIIAGVRDDT-A-FAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLYM  155 (244)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~E~~~~~W~~~~el~~~--~~~~~-~~~~~a~~~~~  155 (244)
                      .....+++|.+....... . ....+++|..++.|++++++.++  .+++. ++++.++.++.
T Consensus       136 ~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g~i~d~~t~~al~~~~  198 (209)
T 1g0s_A          136 GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQ  198 (209)
T ss_dssp             TBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTSSCBHHHHHHHHHHH
T ss_pred             ccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            334567778776422111 1 11234577889999999999873  45555 66776665543

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.75  E-value=9.8e-18  Score=130.48  Aligned_cols=110  Identities=18%  Similarity=0.188  Sum_probs=76.8

Q ss_pred             cCcccccEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc--cccceeee-----
Q 026059           24 SYKVRVPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNKDEFIE-----   95 (244)
Q Consensus        24 ~y~~~v~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l--~~~~~~~~-----   95 (244)
                      .|+.++. +++++++.+++++||++|.. .|.|.+|||++|.||++.+||.||++||||+.+...  ..+.....     
T Consensus         5 ~~~~~~~-v~~~i~~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   83 (150)
T 2o1c_A            5 VYKRPVS-ILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEI   83 (150)
T ss_dssp             CCBCSEE-EEEEEEETTTCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEEC
T ss_pred             cccCceE-EEEEEEeCCCCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeee
Confidence            3555554 46666665435999999887 789999999999999999999999999999988642  12211100     


Q ss_pred             --------e-eeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           96 --------K-IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        96 --------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                              . ...+...++|.+....+.    .....|+.++.|++++++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~E~~~~~W~~~~el~~  131 (150)
T 2o1c_A           84 FSHLRHRYAPGVTRNTESWFCLALPHER----QIVFTEHLAYKWLDAPAAAA  131 (150)
T ss_dssp             CGGGGGGBCTTCCEEEEEEEEEEESSCC----CCCCSSSSCEEEEEHHHHHH
T ss_pred             ecccccccCCCCcceEEEEEEEEcCCCC----CcChhHhhccEeecHHHHHh
Confidence                    0 012345566666543322    12247889999999999986

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.75  E-value=3.1e-18  Score=141.31  Aligned_cols=120  Identities=15%  Similarity=0.194  Sum_probs=86.3

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  102 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~  102 (244)
                      +..+|++++++++  ++||+++.+    .+.|++|||++|+||++++||+||++||||+.+..+..+..+.. +......
T Consensus        48 ~~~av~vl~~~~~--~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  125 (198)
T 1vhz_A           48 NREAVMIVPIVDD--HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSK  125 (198)
T ss_dssp             CCCEEEEEEEETT--EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCE
T ss_pred             CCCEEEEEEEECC--EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcE
Confidence            3446666667765  899998765    35899999999999999999999999999999886665554432 2334456


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC--cccc-ccccchh
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS--DDVI-SHGVTGL  151 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~--~~~~-~~~~~a~  151 (244)
                      +++|.+.......  ...++.|..++.|++++++.++.  +++. ++++.++
T Consensus       126 ~~~f~a~~~~~~~--~~~~~~E~~~~~w~~~~el~~~~~~~~i~~~~~~~al  175 (198)
T 1vhz_A          126 MNIVVAQDLYPES--LEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSAL  175 (198)
T ss_dssp             EEEEEEEEEEECC--CCCCCSSCCCEEEEEGGGGGGGGGCTTTCBHHHHHHH
T ss_pred             EEEEEEEeCCccc--CCCCCCceEEEEEEEHHHHHHHHHcCCCCCHHHHHHH
Confidence            7777776554321  12346788899999999999843  3333 4555444

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.75  E-value=2.5e-17  Score=131.02  Aligned_cols=103  Identities=18%  Similarity=0.204  Sum_probs=67.9

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce-e------eeeee
Q 026059           31 VTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE-F------IEKIF   98 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~-~------~~~~~   98 (244)
                      ++++|+.+ + +++||++|..     .|.|.+|||++|.||++.+||+||++||||+.+.....+.. +      .....
T Consensus        30 ~~~~ii~~-~-~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  107 (165)
T 3oga_A           30 IVCPLIQN-D-GCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYAD  107 (165)
T ss_dssp             EEEEEEEE-T-TEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--
T ss_pred             EEEEEEeC-C-CEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecCC
Confidence            43444444 3 4999999875     38999999999999999999999999999999874322210 0      01111


Q ss_pred             Ce---E--EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           99 GQ---Q--RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        99 ~~---~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ..   .  .+.+|.+....+.    +..++|+.++.|++++++.++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~----~~~~~E~~~~~W~~~~el~~~  149 (165)
T 3oga_A          108 GRQEEIYMIYLIFDCVSANRD----ICINDEFQDYAWVKPEELALY  149 (165)
T ss_dssp             CCEEEEEEEEEEEEEEESCCC----CCCCTTEEEEEEECGGGGGGS
T ss_pred             CCceeEEEEEEEEEeeccCCC----ccCCchheeeEEccHHHHhhC
Confidence            11   1  1233333332222    233578999999999999874

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.75  E-value=7.9e-18  Score=134.76  Aligned_cols=111  Identities=21%  Similarity=0.314  Sum_probs=73.0

Q ss_pred             cccccEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeC-eEEE
Q 026059           26 KVRVPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFG-QQRV  103 (244)
Q Consensus        26 ~~~v~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~-~~~~  103 (244)
                      ..++.+ ++++.++  +++||++|.. .+.|.||||++|+||++.+||+||++||||+.+.....+..+...... ....
T Consensus        21 ~~~~~v-~~ii~~~--~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   97 (171)
T 3id9_A           21 IMQVRV-TGILIED--EKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPSLLH   97 (171)
T ss_dssp             -CEEEE-EEEEEET--TEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSCEEE
T ss_pred             ceEEEE-EEEEEEC--CEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCCCcEEE
Confidence            334444 5555565  3999999987 899999999999999999999999999999998644333333222222 2333


Q ss_pred             EEEEEEeecCCCCcC--CCCCCceeeEEEEccccccCC
Q 026059          104 RLYIIAGVRDDTAFA--PQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~--~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+|.+....+.....  ..+..|+.++.|++++++.++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  135 (171)
T 3id9_A           98 ITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYY  135 (171)
T ss_dssp             EEEEEEEC-------------CCCCCEEEEETGGGGGG
T ss_pred             EEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhC
Confidence            445554443322110  123578899999999999874

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.75  E-value=9.1e-19  Score=142.76  Aligned_cols=123  Identities=20%  Similarity=0.253  Sum_probs=75.7

Q ss_pred             HHHHHHh--hcCcccc-cEEEEEEEe--CC----CCEEEEEEee----------CCCcEEeCeeecCCCCCHHHHHHHHH
Q 026059           16 DDIFKDF--TSYKVRV-PVTGAIILD--ET----YERCILVKGW----------KGSSWSFPRGKKNKDEEDHACAIREV   76 (244)
Q Consensus        16 ~~~~~~~--~~y~~~v-~vv~~ii~~--~~----~~kvLLvkr~----------~~~~w~~PgG~ve~gEs~~eaa~REl   76 (244)
                      .++++.|  ..|+... .+++++|+.  ++    .++|||++|.          ..|.|.+|||++|.||++.+||+||+
T Consensus        11 ~~~~~~~~~~~~~~p~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl   90 (187)
T 3i9x_A           11 EDALKNYNAKEFRTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAEREL   90 (187)
T ss_dssp             ------------CCCSEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHH
T ss_pred             HHHhccCCHhHcCCcccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHH
Confidence            3455666  6666655 555555543  22    2489999992          27899999999999999999999999


Q ss_pred             HhhcCCCCCcccccceeeeee---eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           77 QEETGFDVSKLLNKDEFIEKI---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        77 ~EEtGl~v~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +||||+.+..+..+..+....   .......+|++....... ......+|+.++.|++++++..+
T Consensus        91 ~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~  155 (187)
T 3i9x_A           91 EEETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAIVPPEAL-EKRAAGDDAAEIGLFPMTEALEL  155 (187)
T ss_dssp             HHHHCCCSCCCEEEEEECCTTSSTTSSEEEEEEEEECCHHHH-HHHHHSTTTTTEEEEEHHHHTTS
T ss_pred             HHHHCCCCcceEEEEEEcCCccCCCCCEEEEEEEEEEcCccc-CCcCCCCceeEEEEEeHHHcccC
Confidence            999999988665554433222   112333444443322111 11223577888999999999863

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.75  E-value=1.8e-18  Score=140.11  Aligned_cols=110  Identities=22%  Similarity=0.255  Sum_probs=81.1

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  102 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~  102 (244)
                      +..++++++++.+ +++||++|.+    .+.|++|||++|+||++.+||+||++||||+.+..+..+..+.. .......
T Consensus        40 ~~~~v~v~i~~~~-~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  118 (182)
T 2yvp_A           40 PVAASFVLPVTER-GTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVV  118 (182)
T ss_dssp             SCEEEEEEEBCTT-SEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCE
T ss_pred             cCCEEEEEEEcCC-CEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccE
Confidence            3446677777766 4999999875    57999999999999999999999999999999886655544322 2233456


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +++|.+........ ...+..|+.++.|++++++.++
T Consensus       119 ~~~f~~~~~~~~~~-~~~~~~E~~~~~W~~~~el~~~  154 (182)
T 2yvp_A          119 FHPFLALKARVVTP-PTLEEGELLESLELPLTEVYAL  154 (182)
T ss_dssp             EEEEEECSCEECSC-CCCCTTCCEEEEEEEHHHHHHH
T ss_pred             EEEEEEeccccCCC-CCCCCCceEEEEEEEHHHHHHH
Confidence            67776654331211 2235678999999999999873

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.74  E-value=6.7e-18  Score=134.31  Aligned_cols=111  Identities=21%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             cCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee---
Q 026059           24 SYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI---   97 (244)
Q Consensus        24 ~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~---   97 (244)
                      +..+...+++++|.+++.++|||++|..   .|.|++|||++++||++.+||+||++||||+.+..+..+..+....   
T Consensus         5 r~~~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   84 (161)
T 3exq_A            5 RTQPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDR   84 (161)
T ss_dssp             SCCCEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSC
T ss_pred             ccCCceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCC
Confidence            3444555667777777645999999876   4679999999999999999999999999999988655444332221   


Q ss_pred             eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           98 FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .......+|.+....+.    +. ..|..++.|++++++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~----~~-~~e~~~~~W~~~~el~~~  121 (161)
T 3exq_A           85 QHRKLGLLYRASNFTGT----LK-ASAEGQLSWLPITALTRE  121 (161)
T ss_dssp             SSEEEEEEEEECCEESC----CC-GGGTTTEEEECGGGCCTT
T ss_pred             CeEEEEEEEEEeccCCc----cC-CCccceEEEeeHHHhhhC
Confidence            22334455555444432    22 456678999999999874

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.74  E-value=1e-17  Score=136.95  Aligned_cols=104  Identities=22%  Similarity=0.273  Sum_probs=73.9

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee--eeeC---e-EEE
Q 026059           30 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KIFG---Q-QRV  103 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~--~~~~---~-~~~  103 (244)
                      .+++++|.++  ++|||++|...|.|.+|||++|+||++.+||+||++||||+.+.....+..+..  ....   . ..+
T Consensus         5 ~v~~~vi~~~--~~vLL~~r~~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (188)
T 3fk9_A            5 RVTNCIVVDH--DQVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWML   82 (188)
T ss_dssp             EEEEEEEEET--TEEEEEECTTTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEC--CEEEEEEeCCCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEEE
Confidence            4556667665  399999987789999999999999999999999999999999886444332222  1111   1 144


Q ss_pred             EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+|.+....+.    +....+..++.|++++++..+
T Consensus        83 ~~f~a~~~~~~----~~~~~e~~~~~W~~~~el~~~  114 (188)
T 3fk9_A           83 FTFKATEHEGE----MLKQSPEGKLEWKKKDEVLEL  114 (188)
T ss_dssp             EEEEESCEESC----CCSEETTEEEEEEEGGGGGGS
T ss_pred             EEEEEECCCCC----CcCCCCCEeEEEEEHHHhhhC
Confidence            55655444433    222344578999999999874

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.74  E-value=1.1e-17  Score=130.98  Aligned_cols=110  Identities=23%  Similarity=0.249  Sum_probs=74.9

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee--eeeeeC
Q 026059           25 YKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKIFG   99 (244)
Q Consensus        25 y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~--~~~~~~   99 (244)
                      +++++.+ ++++.++  +++||++|..   .+.|.+|||++|+||++.+||+||++||||+.+.....+..+  ......
T Consensus         5 ~~~~~~v-~~ii~~~--~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   81 (153)
T 2b0v_A            5 WKPNVTV-AAVIEQD--DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNG   81 (153)
T ss_dssp             -CCEEEE-EEECEET--TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTT
T ss_pred             ccCCEEE-EEEEeeC--CEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCC
Confidence            4455544 4444444  3999999876   358999999999999999999999999999998754444332  222112


Q ss_pred             -eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          100 -QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       100 -~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                       .....+|.+.......  ....+.|+.++.|++++++.++
T Consensus        82 ~~~~~~~f~~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~  120 (153)
T 2b0v_A           82 TTYLRFTFSGQVVSFDP--DRKLDTGIVRAAWFSIDEIRAK  120 (153)
T ss_dssp             EEEEEEEEEEEEEEECT--TSCCCTTEEEEEEEEHHHHHHT
T ss_pred             cEEEEEEEEEEeCCCCC--CCCCCCCeeeEEEecHHHHhhh
Confidence             2334456555443321  1233578899999999999874

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.74  E-value=5.2e-17  Score=131.02  Aligned_cols=106  Identities=17%  Similarity=0.184  Sum_probs=78.0

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee-eCeE
Q 026059           29 VPVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-FGQQ  101 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~-~~~~  101 (244)
                      ..++++++++.+ +++||++|..     .|.|+| |||++|.||++.+||+||++||||+.+..+..+..+.... ....
T Consensus        37 ~~~~~v~i~~~~-~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  115 (180)
T 2fkb_A           37 HRATYIVVHDGM-GKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRV  115 (180)
T ss_dssp             EEEEEEEEECSS-SCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEE
T ss_pred             eeEEEEEEECCC-CEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceE
Confidence            346677777766 4899998865     478999 9999999999999999999999999887665555443322 2234


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ..++|.+. ..+.   ...+..|+.++.|++++++.++
T Consensus       116 ~~~~f~~~-~~~~---~~~~~~E~~~~~W~~~~el~~~  149 (180)
T 2fkb_A          116 WGALFSCV-SHGP---FALQEDEVSEVCWLTPEEITAR  149 (180)
T ss_dssp             EEEEEEEE-CCCC---CCCCTTTEEEEEEECHHHHHTT
T ss_pred             EEEEEEEe-cCCC---cCCChhHhheEEEecHHHHHHH
Confidence            45666665 2222   1234678999999999999874

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.74  E-value=5.8e-18  Score=142.53  Aligned_cols=117  Identities=21%  Similarity=0.186  Sum_probs=82.0

Q ss_pred             HhhcCcccccEEEEEEEe--CCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee
Q 026059           21 DFTSYKVRVPVTGAIILD--ETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE   95 (244)
Q Consensus        21 ~~~~y~~~v~vv~~ii~~--~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~   95 (244)
                      .+..|.....+|++||+.  ++.++|||++|..   .|.|.+|||++|+|||+++||.||++||||+.+..+..+..+..
T Consensus         5 ~~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~   84 (226)
T 2fb1_A            5 YYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGA   84 (226)
T ss_dssp             TTTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECC
T ss_pred             ccccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCC
Confidence            455666665666776662  3335999999876   68999999999999999999999999999999886666655433


Q ss_pred             ee--eCeEEEE-EEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC
Q 026059           96 KI--FGQQRVR-LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  140 (244)
Q Consensus        96 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  140 (244)
                      ..  ...+.+. .|.+. .....  ....++|+.++.|+++++++++.
T Consensus        85 ~~r~~~~~~v~~~y~a~-~~~~~--~~~~~~e~~~~~W~~~~el~~l~  129 (226)
T 2fb1_A           85 IDRDPGERVVSIAYYAL-ININE--YDRELVQKHNAYWVNINELPALI  129 (226)
T ss_dssp             TTSSSSSCEEEEEEEEE-CCTTS--SCHHHHHHTTEEEEETTSCCCBS
T ss_pred             CCcCCCceEEEEEEEEE-ecCcc--cccCCccccceEEEEHHHhhhcc
Confidence            22  1223344 45443 33221  11234678899999999998753

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.74  E-value=4.6e-17  Score=131.56  Aligned_cols=100  Identities=20%  Similarity=0.316  Sum_probs=71.8

Q ss_pred             EEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee-e--CeEEEEEE
Q 026059           33 GAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-F--GQQRVRLY  106 (244)
Q Consensus        33 ~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~-~--~~~~~~~~  106 (244)
                      ++++.+.+ +++||++|.+   .|.|.+|||++|.||++.+||+||++||||+.+..+..+..+.... .  ....+++|
T Consensus        28 ~~~vi~~~-~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~f  106 (176)
T 3q93_A           28 TLVLVLQP-QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVF  106 (176)
T ss_dssp             EEEEEECS-SEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCEEEEEEE
T ss_pred             EEEEEEeC-CEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcEEEEEEE
Confidence            33444444 4999999876   6899999999999999999999999999999988665554432221 1  22345666


Q ss_pred             EEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .+....+.    +. ..|..++.|++++++..
T Consensus       107 ~~~~~~~~----~~-~~e~~~~~W~~~~el~~  133 (176)
T 3q93_A          107 CTDSIQGT----PV-ESDEMRPCWFQLDQIPF  133 (176)
T ss_dssp             EESCEESC----CC-CCSSEEEEEEETTCCCG
T ss_pred             EEECCCCC----cC-CCcceeeEEeeHHHccc
Confidence            66444432    22 34567789999999986

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.73  E-value=3.2e-17  Score=128.09  Aligned_cols=105  Identities=19%  Similarity=0.269  Sum_probs=75.7

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQR  102 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~  102 (244)
                      .+.++++|+.++  +++||++|..    .|.|.||||++|.||++.+||.||+.||||+.+.....+..+... ......
T Consensus        21 ~~~~~~~i~~~~--~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   98 (153)
T 3ees_A           21 WIPVVAGFLRKD--GKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGIL   98 (153)
T ss_dssp             EEEEEEEEEEET--TEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEE
T ss_pred             eEEEEEEEEEEC--CEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEE
Confidence            445555555544  4999999886    489999999999999999999999999999988765444332222 122334


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +++|.+....+.     ....|..++.|++++++.++
T Consensus        99 ~~~~~~~~~~~~-----~~~~e~~~~~W~~~~el~~~  130 (153)
T 3ees_A           99 ILFYEILYWKGE-----PRAKHHMMLEWIHPEELKHR  130 (153)
T ss_dssp             EEEEEECEEESC-----CCCSSSSEEEEECGGGGGGS
T ss_pred             EEEEEEEECCCC-----cCCCccceEEEecHHHhhhC
Confidence            556655544432     23567889999999999874

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.73  E-value=3.2e-17  Score=129.55  Aligned_cols=108  Identities=22%  Similarity=0.305  Sum_probs=76.6

Q ss_pred             cccccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccc--ccceeeee-ee
Q 026059           26 KVRVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL--NKDEFIEK-IF   98 (244)
Q Consensus        26 ~~~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~--~~~~~~~~-~~   98 (244)
                      +..+.++++++.+.+ +++||++|..    .|.|.||||++|.||++.+||.||++||||+.+....  .+..+... ..
T Consensus        26 ~~~~~~~~~~i~~~~-~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~  104 (158)
T 3hhj_A           26 SSLLIVVACALLDQD-NRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYET  104 (158)
T ss_dssp             -CEEEEEEEEEBCTT-SEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS
T ss_pred             CceEEEEEEEEEeCC-CEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCC
Confidence            344556666777766 4999999885    5899999999999999999999999999999988542  23222221 22


Q ss_pred             CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ....+.+|.+....+.     ....|..++.|++++++.++
T Consensus       105 ~~~~~~~~~~~~~~~~-----~~~~e~~~~~W~~~~el~~~  140 (158)
T 3hhj_A          105 FHLLMPLYFCSHYKGV-----AQGREGQNLKWIFINDLDKY  140 (158)
T ss_dssp             CEEEEEEEEESCCBSC-----CCCTTSCEEEEEEGGGGGGS
T ss_pred             cEEEEEEEEEEECCCc-----cCCccccceEEEcHHHHhhC
Confidence            3344555555433321     22567889999999999874

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.73  E-value=3.6e-17  Score=129.00  Aligned_cols=106  Identities=16%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC--cccccceeee--eee----
Q 026059           30 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIE--KIF----   98 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~--~l~~~~~~~~--~~~----   98 (244)
                      .++++++++.+ +++||++|..   .+.|.+|||++++||++.+||+||++||||+.+.  .+..+..+..  ...    
T Consensus        19 ~~v~~vi~~~~-~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   97 (160)
T 1rya_A           19 VSLDFIVENSR-GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGT   97 (160)
T ss_dssp             EEEEEEEECTT-SCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBS
T ss_pred             EEEEEEEEcCC-CEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccccCC
Confidence            35567777755 4899999987   6899999999999999999999999999999964  3333322211  111    


Q ss_pred             --C-eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           99 --G-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        99 --~-~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                        . +....+|.+....+.   ...+..|+.++.|++++++.++
T Consensus        98 ~~~~~~~~~~f~~~~~~~~---~~~~~~e~~~~~W~~~~el~~~  138 (160)
T 1rya_A           98 DFTTHYVVLGFRFRVSEEE---LLLPDEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             SSCEEEEEEEEEEECCGGG---CCCCSSSEEEEEEECHHHHHHC
T ss_pred             CcCcEEEEEEEEEEcCccc---cccCCCccceEEEecHHHHhhc
Confidence              1 334556655543322   1224578999999999999863

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.73  E-value=1.1e-17  Score=132.35  Aligned_cols=109  Identities=18%  Similarity=0.364  Sum_probs=74.0

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc----eeeeee-------
Q 026059           30 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD----EFIEKI-------   97 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~----~~~~~~-------   97 (244)
                      .++++++++.+ +++||++|.. ++.|++|||++|.||++++||+||++||||+.+..+....    .+....       
T Consensus        15 ~~v~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (165)
T 1f3y_A           15 RNVGICLMNND-KKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLN   93 (165)
T ss_dssp             CEEEEEEECTT-SCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHHHHG
T ss_pred             eeEEEEEECCC-CcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCcccccccc
Confidence            34466777766 4999999876 6899999999999999999999999999999876433221    111000       


Q ss_pred             ------eCeEEEEEEEEEeecCCCCcCC----CCCCceeeEEEEccccccCC
Q 026059           98 ------FGQQRVRLYIIAGVRDDTAFAP----QTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        98 ------~~~~~~~~~~~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~  139 (244)
                            ......++|.+...........    .+.+|+.++.|++++++.++
T Consensus        94 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  145 (165)
T 1f3y_A           94 IQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDL  145 (165)
T ss_dssp             GGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHH
T ss_pred             ccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHH
Confidence                  0112345555544332211111    13578999999999999873

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.73  E-value=4.1e-18  Score=136.62  Aligned_cols=106  Identities=21%  Similarity=0.363  Sum_probs=75.0

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  102 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~  102 (244)
                      +..++++++++ + +++||+++.+    .+.|.+|||++|+|||+++||.||++||||+ +..+..+..+.. .......
T Consensus        33 ~~~~v~vii~~-~-~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~  109 (170)
T 1v8y_A           33 HKPAVAVIALR-E-GRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEK  109 (170)
T ss_dssp             ECCEEEEEEEE-T-TEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCE
T ss_pred             cCCeEEEEEEE-C-CEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccE
Confidence            44577788888 4 4999998765    5789999999999999999999999999999 776655554332 2233456


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +++|.+....+..  ...+++|+.++.|++++++.+
T Consensus       110 ~~~f~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~  143 (170)
T 1v8y_A          110 THVFLAENLKEVE--AHPDEDEAIEVVWMRPEEALE  143 (170)
T ss_dssp             EEEEEEEEEEECC----------CEEEEECHHHHHH
T ss_pred             EEEEEEEeccccC--CCCCCCceEEEEEEEHHHHHH
Confidence            6777776544221  122467889999999999987

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.73  E-value=1.2e-17  Score=129.91  Aligned_cols=105  Identities=17%  Similarity=0.142  Sum_probs=73.4

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceee---eeee----CeE
Q 026059           29 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI---EKIF----GQQ  101 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~---~~~~----~~~  101 (244)
                      ...++++|.+++.+++||++|. .|.|.+|||+++.||++.+||.||++||||+.+.....+..+.   ....    ...
T Consensus        18 ~~~~~~vi~~~~~~~vLl~~r~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (148)
T 2azw_A           18 RYAAYIIVSKPENNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYN   96 (148)
T ss_dssp             CCEEEEECEEGGGTEEEEEECT-TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTEEEEE
T ss_pred             eeEEEEEEECCCCCeEEEEEcC-CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCCCcceEE
Confidence            3455666666523599999974 6899999999999999999999999999999987544443321   1111    123


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ..++|.+....+.    ....+|+.++.|++++++.+
T Consensus        97 ~~~~~~~~~~~~~----~~~~~e~~~~~W~~~~el~~  129 (148)
T 2azw_A           97 PGYFYVANTWRQL----SEPLERTNTLHWVAPEEAVR  129 (148)
T ss_dssp             EEEEEEEEEEEEC----SSCC-CCSEEEEECHHHHHH
T ss_pred             EEEEEEEEcCcCC----cCCCCceeeEEEeeHHHHHh
Confidence            4556666554332    22346778999999999986

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.73  E-value=1.1e-16  Score=128.02  Aligned_cols=108  Identities=19%  Similarity=0.279  Sum_probs=76.4

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee------eeee------
Q 026059           30 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF------IEKI------   97 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~------~~~~------   97 (244)
                      .++++++++.+ +++||++|...+.|.+|||+++.||++.+||.||++||||+.+..+..+..+      ....      
T Consensus         9 ~~v~~~i~~~~-~~vLl~~r~~~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (164)
T 2kdv_A            9 PNVGIVICNRQ-GQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWD   87 (164)
T ss_dssp             EEEEEEEECTT-SEEEEEEETTCCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTTCCTT
T ss_pred             cEEEEEEEccC-CEEEEEEEcCCCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCcceeeec
Confidence            45677777766 4999999887899999999999999999999999999999998754433321      1110      


Q ss_pred             ----eCeEEEEEEEEEeecCCCCcCC--CCCCceeeEEEEccccccC
Q 026059           98 ----FGQQRVRLYIIAGVRDDTAFAP--QTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        98 ----~~~~~~~~~~~~~~~~~~~~~~--~~~~E~~~~~W~~~~el~~  138 (244)
                          ...+..++|.+....+......  ....|+.+++|++++++.+
T Consensus        88 ~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~  134 (164)
T 2kdv_A           88 TKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVR  134 (164)
T ss_dssp             SSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGG
T ss_pred             cCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhh
Confidence                1123456666654433222111  1346899999999999865

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.72  E-value=2.9e-18  Score=142.23  Aligned_cols=111  Identities=20%  Similarity=0.364  Sum_probs=75.8

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecC-CCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKN-KDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQ  101 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve-~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~  101 (244)
                      +..+|++++++.+ +++||+++.+    .+.|+||||++| .||++++||+||++||||+.+..+..+..+.. ......
T Consensus        42 ~~~av~v~i~~~~-~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  120 (207)
T 1mk1_A           42 HFGAVAIVAMDDN-GNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDE  120 (207)
T ss_dssp             ECCEEEEEECCTT-SEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCC
T ss_pred             CCCEEEEEEEcCC-CEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCcccc
Confidence            4457677777766 5999999875    468999999999 99999999999999999999886555544322 222233


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+++|.+............++.|+.++.|++++++.++
T Consensus       121 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~  158 (207)
T 1mk1_A          121 SVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARR  158 (207)
T ss_dssp             CEEEEEEEEEEECCC----------CEEEEEHHHHHHH
T ss_pred             EEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHH
Confidence            56777776554332111134678899999999999873

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.72  E-value=2e-17  Score=138.51  Aligned_cols=113  Identities=15%  Similarity=0.187  Sum_probs=80.1

Q ss_pred             cccccEEEEEEEeCCCCEEEEEEeeC-----------------------------------CCcEEeCeeecCC-CCCHH
Q 026059           26 KVRVPVTGAIILDETYERCILVKGWK-----------------------------------GSSWSFPRGKKNK-DEEDH   69 (244)
Q Consensus        26 ~~~v~vv~~ii~~~~~~kvLLvkr~~-----------------------------------~~~w~~PgG~ve~-gEs~~   69 (244)
                      ..+..+|++++++.+.+++||+++.+                                   ++.|++|||++|+ ||+++
T Consensus        33 v~~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~  112 (218)
T 3q91_A           33 MKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLE  112 (218)
T ss_dssp             --CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHH
T ss_pred             EEcCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHH
Confidence            34567778888885446999999765                                   3589999999999 99999


Q ss_pred             HHHHHHHHhhcCCCC--Ccccccceeee-eeeCeEEEEEEEEEeecCCC---CcCCCCCCceeeEEEEccccccC
Q 026059           70 ACAIREVQEETGFDV--SKLLNKDEFIE-KIFGQQRVRLYIIAGVRDDT---AFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        70 eaa~REl~EEtGl~v--~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +||+||++||||+.+  ..+..+..+.. .......+++|.+.......   .....+++|+.++.|++++++.+
T Consensus       113 eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~  187 (218)
T 3q91_A          113 EVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQA  187 (218)
T ss_dssp             HHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHH
T ss_pred             HHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHH
Confidence            999999999999998  56666665443 33555677788776543210   01223467899999999999987

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.72  E-value=4.5e-17  Score=125.56  Aligned_cols=105  Identities=18%  Similarity=0.283  Sum_probs=74.4

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee-eCeEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-FGQQR  102 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~-~~~~~  102 (244)
                      .+.++++|+.++  +++||++|..    +|.|+||||+++.||++.+||.||++||||+.+.....+..+.+.. .....
T Consensus         8 ~~~~~~~ii~~~--~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   85 (140)
T 2rrk_A            8 MIEVVAAIIERD--GKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIH   85 (140)
T ss_dssp             EEEEEEEEEEET--TEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEE
T ss_pred             cceEEEEEEEcC--CEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEE
Confidence            455556666444  3999999865    5999999999999999999999999999999887554444332211 22234


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +++|.+....+.    + ...|+.++.|++++++.++
T Consensus        86 ~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  117 (140)
T 2rrk_A           86 LHAWHVPDFHGT----L-QAHEHQALVWCSPEEALQY  117 (140)
T ss_dssp             EEEEEESEEEEC----C-CCSSCSCEEEECHHHHTTS
T ss_pred             EEEEEEEeeCCC----c-CCCccceeEEeCHHHHhhC
Confidence            455655433321    1 2467788999999999874

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.71  E-value=7.2e-18  Score=138.72  Aligned_cols=104  Identities=19%  Similarity=0.274  Sum_probs=71.0

Q ss_pred             EEEEE-eCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEEEe
Q 026059           33 GAIIL-DETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAG  110 (244)
Q Consensus        33 ~~ii~-~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~~~  110 (244)
                      ++|++ +++.++|||++|.+ ++.|.+|||++|+||++++||+||++||||+.+..+..+..+... .......+|.+..
T Consensus        44 ~~vi~~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~-~~~~~~~~f~~~~  122 (194)
T 2fvv_A           44 ACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQ-ERKHRTYVYVLIV  122 (194)
T ss_dssp             EEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEET-TTTEEEEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcC-CCceEEEEEEEEE
Confidence            44444 34346999999876 789999999999999999999999999999998765555444322 2234555665543


Q ss_pred             ecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          111 VRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       111 ~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ...... ......+..++.|++++++.+
T Consensus       123 ~~~~~~-~~~~~e~~~~~~W~~~~el~~  149 (194)
T 2fvv_A          123 TEVLED-WEDSVNIGRKREWFKIEDAIK  149 (194)
T ss_dssp             EEECSS-CHHHHHHCCCEEEEEHHHHHH
T ss_pred             ccccCC-CCCcccccceEEEEEHHHHHH
Confidence            221100 001112346899999999976

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.71  E-value=3.9e-17  Score=128.38  Aligned_cols=111  Identities=21%  Similarity=0.231  Sum_probs=74.3

Q ss_pred             cCcccccEEEEEEEeCCCCE--EEEEEeeCC--CcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee--
Q 026059           24 SYKVRVPVTGAIILDETYER--CILVKGWKG--SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI--   97 (244)
Q Consensus        24 ~y~~~v~vv~~ii~~~~~~k--vLLvkr~~~--~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~--   97 (244)
                      ++.....+++++|.+++.++  +||++|...  ..|.+|||++++||++.+||+||++||||+.+.....+..+....  
T Consensus         3 r~~~~~~~~~~ii~~~~~~~~~vLl~~r~~~~~~gw~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   82 (155)
T 2b06_A            3 RSQLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDT   82 (155)
T ss_dssp             GGGCEEEEEEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTT
T ss_pred             CCcCcEEEEEEEEEECCCCeEEEEEEECCCCCCCCEeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccCC
Confidence            34555666777787764222  888887662  228999999999999999999999999999887544443322221  


Q ss_pred             eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           98 FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .....+.+|.+....+.    + ...|..++.|++++++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  119 (155)
T 2b06_A           83 GGRYIVICYKATEFSGT----L-QSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             SCEEEEEEEEECEEEEC----C-CCBTTBEEEEEEGGGGGGS
T ss_pred             CceEEEEEEEEEecCCC----C-CCCcceeeEEeeHHHhhhC
Confidence            23345566665544332    1 2357789999999999874

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.71  E-value=7.3e-17  Score=129.11  Aligned_cols=98  Identities=24%  Similarity=0.388  Sum_probs=68.2

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI  107 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~  107 (244)
                      .+.++++|+.+++  ++||++|. .|.|.+|||++|.||++.+||.||++||||+.+..+..+..+...   .....+|.
T Consensus        15 ~~~~~~~ii~~~~--~vLL~~r~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~---~~~~~~f~   88 (163)
T 3f13_A           15 LARRATAIIEMPD--GVLVTASR-GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITP---FNAHKVYL   88 (163)
T ss_dssp             CEEEEEEECEETT--EEEEEECC----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECS---SEEEEEEE
T ss_pred             ceEEEEEEEEeCC--EEEEEEEC-CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecC---CeEEEEEE
Confidence            4445555555553  89999886 689999999999999999999999999999999876555443322   24556666


Q ss_pred             EEeecCCCCcCCCCCCceeeEEEEccccc
Q 026059          108 IAGVRDDTAFAPQTKKEISEIAWQRLDEL  136 (244)
Q Consensus       108 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el  136 (244)
                      +. ..+.    +...+|+.++.|++.+.+
T Consensus        89 ~~-~~~~----~~~~~E~~~~~W~~~~~~  112 (163)
T 3f13_A           89 CI-AQGQ----PKPQNEIERIALVSSPDT  112 (163)
T ss_dssp             EE-C-CC----CCCCTTCCEEEEESSTTC
T ss_pred             EE-ECCc----CccCCCceEEEEECcccc
Confidence            64 3332    233458899999995444

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.70  E-value=6.6e-17  Score=127.76  Aligned_cols=56  Identities=27%  Similarity=0.455  Sum_probs=49.0

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc
Q 026059           30 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL   87 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l   87 (244)
                      .+++++|+++  +++||++|...|.|.+|||++|+|||+.+||.||++||||+.+...
T Consensus         2 ~~~~~vi~~~--~~vLL~~r~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~   57 (156)
T 1k2e_A            2 IVTSGVLVEN--GKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI   57 (156)
T ss_dssp             EEEEEECEET--TEEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEC
T ss_pred             eEEEEEEEEC--CEEEEEEEcCCCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceec
Confidence            3556777773  4999999877899999999999999999999999999999988753

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.70  E-value=9.7e-17  Score=126.12  Aligned_cols=104  Identities=19%  Similarity=0.236  Sum_probs=71.1

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce--eeeeeeC---eEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIFG---QQRVRL  105 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~--~~~~~~~---~~~~~~  105 (244)
                      +++++|.++  +++||++|  .+.|.+|||++++||++.+||.||++||||+.+.....+..  +.....+   +....+
T Consensus        21 ~~~~ii~~~--~~vLl~~r--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (154)
T 2pqv_A           21 RATALIVQN--HKLLVTKD--KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFH   96 (154)
T ss_dssp             EEEECCEET--TEEEEEEE--TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEC--CEEEEEec--CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcceEEEEE
Confidence            445566664  49999998  78999999999999999999999999999999875333322  1111111   123345


Q ss_pred             EEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          106 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      |.+....+. .....+++|+.++.|++++++..+
T Consensus        97 f~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~  129 (154)
T 2pqv_A           97 YLVDLLEDA-PLTMQEDEKRQPCEWIDLDKLQNI  129 (154)
T ss_dssp             EEEEESSCC-CSEEEETTEEEEEEEEEGGGGGGS
T ss_pred             EEEEecCCC-CcccCCCCceeeEEEeEHHHHhhc
Confidence            555443322 111123567899999999999874

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.70  E-value=1.9e-17  Score=125.74  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=72.8

Q ss_pred             EEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEEEEE
Q 026059           32 TGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRLY  106 (244)
Q Consensus        32 v~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~~~~  106 (244)
                      +++++.+.+ +++||++|..    +|.|++|||+++.||++.+||.||++||||+.+..+..+..+.+ .......+++|
T Consensus         7 ~~~ii~~~~-~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
T 1mut_A            7 AVGIIRNEN-NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFW   85 (129)
T ss_dssp             CCEECEETT-TEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCE
T ss_pred             EEEEEEecC-CEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEE
Confidence            344555655 4999999876    49999999999999999999999999999999875444433221 11223344566


Q ss_pred             EEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+....+.    + ...|+.++.|++++++.++
T Consensus        86 ~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  113 (129)
T 1mut_A           86 LVERWEGE----P-WGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             EEEECSSC----C-CCCSSCCCEEEESSSCCTT
T ss_pred             EEEccCCc----c-CCcccceeEEeCHHHcccc
Confidence            66543321    2 2467788999999999874

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.69  E-value=2.2e-16  Score=136.48  Aligned_cols=121  Identities=18%  Similarity=0.340  Sum_probs=83.2

Q ss_pred             chHHHHHHhhc-----CcccccEEEEEEEe--CC--CCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcC
Q 026059           14 HIDDIFKDFTS-----YKVRVPVTGAIILD--ET--YERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETG   81 (244)
Q Consensus        14 ~~~~~~~~~~~-----y~~~v~vv~~ii~~--~~--~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtG   81 (244)
                      ..++.+..+..     |.....+|++||+.  ++  .++|||++|..   .|.|.+|||++|+||++++||.||++||||
T Consensus        19 ~~~~~l~~~~~~~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtG   98 (273)
T 2fml_A           19 SLAEFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETG   98 (273)
T ss_dssp             CHHHHHHHHTTSCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHC
T ss_pred             CHHHHHHhhhhhhcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHC
Confidence            44456666654     66665566666654  22  24899999876   689999999999999999999999999999


Q ss_pred             CCCC--cccccceeeeeee---CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           82 FDVS--KLLNKDEFIEKIF---GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        82 l~v~--~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +.+.  .+..+..+.....   ......+|.+. .....   ....+|..++.|++++++..
T Consensus        99 l~v~~~~l~~l~~~~~~~r~~~~~~~~~~y~a~-~~~~~---~~~~~E~~~~~W~~~~e~~~  156 (273)
T 2fml_A           99 VVISQENIEQLHSFSRPDRDPRGWVVTVSYLAF-IGEEP---LIAGDDAKEVHWFNLERHGQ  156 (273)
T ss_dssp             CCCCGGGEEEEEEECCTTSSTTSSEEEEEEEEE-CCCCC---CCCCTTEEEEEEEEEEEETT
T ss_pred             CCCCcCcEEEEEEEcCCCCCCCceEEEEEEEEE-eCCCC---CCCCcceeeEEEEEhhHhhh
Confidence            8765  3444544433221   12344555553 33321   34467899999999998754

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.68  E-value=5.6e-17  Score=129.77  Aligned_cols=105  Identities=14%  Similarity=0.101  Sum_probs=77.0

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcEE-eCeeecCCCCCHHHHHHHHHHhhcCCCCCc--ccccceee-eeeeC
Q 026059           29 VPVTGAIILDETYERCILVKGWK-----GSSWS-FPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFI-EKIFG   99 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~-~PgG~ve~gEs~~eaa~REl~EEtGl~v~~--l~~~~~~~-~~~~~   99 (244)
                      ..++++++++.++ ++||++|..     .|.|+ +|||++++||++.+||+||++||||+.+..  +..+..+. .....
T Consensus        34 ~~~v~v~i~~~~~-~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~  112 (171)
T 1q27_A           34 VRVVNAFLRNSQG-QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTL  112 (171)
T ss_dssp             CEEEEEEEEETTT-EEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCC
T ss_pred             ceEEEEEEECCCC-eEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCC
Confidence            4566777777764 999999854     58898 999999999999999999999999999875  34444433 22222


Q ss_pred             eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          100 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ...+++|.+.. .+.  . ..+..|+.++.|++++++.+
T Consensus       113 ~~~~~~f~~~~-~~~--~-~~~~~E~~~~~W~~~~el~~  147 (171)
T 1q27_A          113 SSFMCVYELRS-DAT--P-IFNPNDISGGEWLTPEHLLA  147 (171)
T ss_dssp             SSEEEEEEEEC-CCC--C-CSCTTTCSCCEEECHHHHHH
T ss_pred             ccEEEEEEEEE-CCc--c-ccCchhhheEEEecHHHHHH
Confidence            23566676654 322  1 12357888999999999985

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.67  E-value=1.7e-16  Score=129.80  Aligned_cols=108  Identities=19%  Similarity=0.165  Sum_probs=75.8

Q ss_pred             EEEEEEEeCCCC-EEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEE
Q 026059           31 VTGAIILDETYE-RCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV  103 (244)
Q Consensus        31 vv~~ii~~~~~~-kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~  103 (244)
                      .+++++++.+++ ++||++|..     .|.|+||||++|.||++++||+||++||||+.+..+..+..+.. .......+
T Consensus        36 ~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  115 (194)
T 1nqz_A           36 AAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHV  115 (194)
T ss_dssp             EEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEEE
T ss_pred             EEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCCCCeEE
Confidence            334444454422 899999864     68999999999999999999999999999999886555443222 12334566


Q ss_pred             EEEEEEeecCCCCcCCCCCCceeeEEEEccccc-cCC
Q 026059          104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL-QPA  139 (244)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el-~~~  139 (244)
                      ++|.+...... .....+.+|+.++.|++++++ .+.
T Consensus       116 ~~f~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~  151 (194)
T 1nqz_A          116 TPVLGRIAPEA-LDTLRVTPEVAQIITPTLAELRAVP  151 (194)
T ss_dssp             EEEEEEECGGG-GGGCCCCTTEEEEECCBHHHHHHSC
T ss_pred             EEEEEEecCCc-cccCCCccceeEEEEEEHHHhccCC
Confidence            67766543221 101234678999999999999 763

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.67  E-value=3.4e-16  Score=127.65  Aligned_cols=103  Identities=11%  Similarity=0.220  Sum_probs=75.4

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCCcc-cccceeeee---ee--
Q 026059           31 VTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIEK---IF--   98 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~~l-~~~~~~~~~---~~--   98 (244)
                      ++++++++.+ +++||++|..     .|.|++ |||++|.||++++||+||++||||+.+..+ ..+..+...   ..  
T Consensus        34 ~v~~~i~~~~-g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  112 (190)
T 1hzt_A           34 AFSSWLFNAK-GQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI  112 (190)
T ss_dssp             CEEEEEECTT-CCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred             EEEEEEEcCC-CEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCC
Confidence            5577777766 4899999865     589999 999999999999999999999999998866 444332211   11  


Q ss_pred             -CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           99 -GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        99 -~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                       .....++|.+. ..+.  . ..+++|+.++.|++++++.+
T Consensus       113 ~~~~~~~~f~~~-~~~~--~-~~~~~E~~~~~W~~~~el~~  149 (190)
T 1hzt_A          113 VENEVCPVFAAR-TTSA--L-QINDDEVMDYQWCDLADVLH  149 (190)
T ss_dssp             EEEEECCEEEEE-BCSC--C-CCCTTTEEEEEEECHHHHHH
T ss_pred             cceEEEEEEEEe-cCCC--C-cCCccceeeEEEecHHHHHH
Confidence             13344566554 3332  1 22467899999999999987

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.66  E-value=3.1e-16  Score=130.43  Aligned_cols=98  Identities=22%  Similarity=0.306  Sum_probs=70.3

Q ss_pred             CEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee-eeeeeCeEEEEEEEEEeecCCCC
Q 026059           42 ERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-IEKIFGQQRVRLYIIAGVRDDTA  116 (244)
Q Consensus        42 ~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  116 (244)
                      +++||+++.+    .+.|++|||++|+||++++||+||++||||+.+..+..+..+ ..+......+++|.+........
T Consensus        77 ~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~  156 (212)
T 2dsc_A           77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAE  156 (212)
T ss_dssp             CEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSGG
T ss_pred             cEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEEEEEEEeCcccc
Confidence            4899998754    458999999999999999999999999999998755444332 22333445566776553221110


Q ss_pred             ----cCCCCCCceeeEEEEccccccCC
Q 026059          117 ----FAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       117 ----~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                          ....+++|+.++.|++++++.++
T Consensus       157 ~~~~~~~~~~~E~~~~~w~~~~el~~~  183 (212)
T 2dsc_A          157 NARPKPKPGDGEFVEVISLPKNDLLQR  183 (212)
T ss_dssp             GSSCCCCCCTTCCCEEEEEEGGGHHHH
T ss_pred             ccCCCCCCCCCceEEEEEEEHHHHHHH
Confidence                11234678999999999999874

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.65  E-value=9.8e-17  Score=136.18  Aligned_cols=111  Identities=15%  Similarity=0.232  Sum_probs=75.7

Q ss_pred             CcccccEEEEEEE--eCCCCEEEEEEeeC---CCcEEeCeeecCC--CCCHHHHHHHHHHhhcCCCCCcccccceeeeee
Q 026059           25 YKVRVPVTGAIIL--DETYERCILVKGWK---GSSWSFPRGKKNK--DEEDHACAIREVQEETGFDVSKLLNKDEFIEKI   97 (244)
Q Consensus        25 y~~~v~vv~~ii~--~~~~~kvLLvkr~~---~~~w~~PgG~ve~--gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~   97 (244)
                      |.....+|++||+  +++.++|||++|..   .|.|.+|||++++  |||+.+||+||++||||+.+..+..+..+....
T Consensus        18 ~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~   97 (240)
T 3gz5_A           18 FKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNS   97 (240)
T ss_dssp             ---CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEEESS
T ss_pred             cCCCccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeCCCc
Confidence            3333334455555  34335999999886   6899999999999  999999999999999999998776666554432


Q ss_pred             ---eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           98 ---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        98 ---~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                         ........|.+......   .....+|+.++.|+++++++.
T Consensus        98 r~~~~~~~~~~y~a~~~~~~---~~~~~~e~~~~~W~~~~el~~  138 (240)
T 3gz5_A           98 RDARGWSVTVCYTALMSYQA---CQIQIASVSDVKWWPLADVLQ  138 (240)
T ss_dssp             SSTTSCEEEEEEEEECCHHH---HHHHHTTCTTEEEEEHHHHTT
T ss_pred             cCCCceEEEEEEEEEecccc---cCCCCCcccceEEecHHHccc
Confidence               12233344544332221   111246788999999999974

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.65  E-value=8.4e-16  Score=136.60  Aligned_cols=115  Identities=16%  Similarity=0.223  Sum_probs=79.9

Q ss_pred             hcCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccc------cee
Q 026059           23 TSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK------DEF   93 (244)
Q Consensus        23 ~~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~------~~~   93 (244)
                      ..|++...+++++|.++  ++|||++|..   .|.|++|||++|+|||+++||+||++||||+.+.....+      ..+
T Consensus       202 ~~~~~~~~~v~~vv~~~--~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~  279 (352)
T 2qjt_B          202 APFKPNFVTVDALVIVN--DHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVF  279 (352)
T ss_dssp             SSSCCEEEEEEEEEEET--TEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEE
T ss_pred             cCCCCCceEEEEEEEEC--CEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEe
Confidence            34556666777777755  4999999876   489999999999999999999999999999998742211      111


Q ss_pred             eeeee---CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEcc-ccccCC
Q 026059           94 IEKIF---GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRL-DELQPA  139 (244)
Q Consensus        94 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~-~el~~~  139 (244)
                      ..+..   .....++|.+....+.......+++|+.++.|+++ +++.++
T Consensus       280 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~  329 (352)
T 2qjt_B          280 DYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNI  329 (352)
T ss_dssp             CCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHT
T ss_pred             cCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhh
Confidence            11111   12345566665433321122234689999999999 999874

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.64  E-value=1.2e-15  Score=120.18  Aligned_cols=104  Identities=16%  Similarity=0.237  Sum_probs=70.4

Q ss_pred             EEEEEEEeCC--CCEEEEEEeeC----CCcEEeCeeecCCCCCHH-HHHHHHHHhhcC-CCCCcccccceeee-eeeCeE
Q 026059           31 VTGAIILDET--YERCILVKGWK----GSSWSFPRGKKNKDEEDH-ACAIREVQEETG-FDVSKLLNKDEFIE-KIFGQQ  101 (244)
Q Consensus        31 vv~~ii~~~~--~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~-eaa~REl~EEtG-l~v~~l~~~~~~~~-~~~~~~  101 (244)
                      .+++||.+++  ++++||++|..    .|.|+||||+++.||++. +||.||++|||| +.+..+..+..+.+ ......
T Consensus        21 ~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~~~~~  100 (155)
T 1x51_A           21 SATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKL  100 (155)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSCEE
T ss_pred             EEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecCCccE
Confidence            3444555431  24999999875    589999999999999996 999999999999 87765443332221 112234


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+++|.+....+.    + ...|..++.|++++++.++
T Consensus       101 ~~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  133 (155)
T 1x51_A          101 TYQVYGLALEGQT----P-VTTVPPGARWLTQEEFHTA  133 (155)
T ss_dssp             EEEEEEEECSSCC----C-CCCCCTTEEEEEHHHHHHS
T ss_pred             EEEEEEEEEcCCC----C-CCCCCCccEEccHHHhhhc
Confidence            4566666543221    1 1345678999999999863

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.64  E-value=5e-16  Score=139.21  Aligned_cols=97  Identities=24%  Similarity=0.336  Sum_probs=67.9

Q ss_pred             CEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce--eeeeee------------CeEEEEEEE
Q 026059           42 ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIF------------GQQRVRLYI  107 (244)
Q Consensus        42 ~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~--~~~~~~------------~~~~~~~~~  107 (244)
                      .+|||++|...+.|.||||++|+||++++||+||++||||+.+.....+..  +.....            ....+++|.
T Consensus        38 ~~vLLv~r~~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~  117 (364)
T 3fjy_A           38 IEVCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWM  117 (364)
T ss_dssp             EEEEEEEETTTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------CEEEEE
T ss_pred             eEEEEEEcCCCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCceEEEEEE
Confidence            499999997789999999999999999999999999999999875433332  111110            134456666


Q ss_pred             EEeecCCC---------CcCCCCCCceeeEEEEccccccC
Q 026059          108 IAGVRDDT---------AFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       108 ~~~~~~~~---------~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +....+..         .....+.+|+.++.|++++++.+
T Consensus       118 ~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~  157 (364)
T 3fjy_A          118 AQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARK  157 (364)
T ss_dssp             EEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHH
T ss_pred             EEecCCccccccccccCccccCCccceeeeecCcHHHHHH
Confidence            55443310         11123467899999999999987

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.64  E-value=8.3e-17  Score=133.82  Aligned_cols=102  Identities=19%  Similarity=0.183  Sum_probs=68.6

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-C------CcEEe-CeeecCCCCC------HHHHHHHHHHhhcCCCCCcccccceeeee
Q 026059           31 VTGAIILDETYERCILVKGWK-G------SSWSF-PRGKKNKDEE------DHACAIREVQEETGFDVSKLLNKDEFIEK   96 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~-~------~~w~~-PgG~ve~gEs------~~eaa~REl~EEtGl~v~~l~~~~~~~~~   96 (244)
                      +..|||.++  +++||++|.. +      +.|.+ |||+||+|||      +++||+||++||||+.+..+..++.+...
T Consensus        70 i~~~II~~~--grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~  147 (211)
T 3e57_A           70 IPYVVIMDG--DRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSS  147 (211)
T ss_dssp             EEEEEEEET--TEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECC
T ss_pred             EEEEEEEEC--CEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEecc
Confidence            444555554  4999999976 2      68998 9999999998      49999999999999987765444433221


Q ss_pred             --eeC-eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           97 --IFG-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        97 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                        ..+ .+...+|.+....+    .+ ...|..++.|+++++|.++
T Consensus       148 ~~~~~~~~l~~~f~~~~~~g----~~-~~~E~~~~~W~~~~eL~~~  188 (211)
T 3e57_A          148 TTEVSRVHLGALFLGRGKFF----SV-KEKDLFEWELIKLEELEKF  188 (211)
T ss_dssp             SSHHHHTEEEEEEEEEEEEE----EE-SCTTTCEEEEEEHHHHHHH
T ss_pred             CCCCCeEEEEEEEEEEeCCc----ee-CCCCeEEEEEEEHHHHHHh
Confidence              112 23344666665432    22 2466788999999999874

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.63  E-value=1.3e-15  Score=134.58  Aligned_cols=112  Identities=19%  Similarity=0.226  Sum_probs=73.5

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc------eeee
Q 026059           25 YKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD------EFIE   95 (244)
Q Consensus        25 y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~------~~~~   95 (244)
                      |++...+++++|.++  +++||++|..   .|.|++|||++|+||++++||.||++||||+.+.....+.      .+..
T Consensus       199 ~~~~~~~v~~vi~~~--~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  276 (341)
T 2qjo_A          199 YAPTFITTDAVVVQA--GHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDA  276 (341)
T ss_dssp             SCCCEEEEEEEEEET--TEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECC
T ss_pred             CCCCceEEEEEEEeC--CEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeC
Confidence            444455667777765  4999999876   6899999999999999999999999999999988533221      1111


Q ss_pred             eee---CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           96 KIF---GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        96 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +..   +....++|.+....+. .....+++|+.++.|++++++.++
T Consensus       277 ~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~  322 (341)
T 2qjo_A          277 PGRSLRGRTITHAYFIQLPGGE-LPAVKGGDDAQKAWWMSLADLYAQ  322 (341)
T ss_dssp             TTSCTTSCEEEEEEEEECCSSS-CCCCC------CEEEEEHHHHHHT
T ss_pred             CCCCCCCcEEEEEEEEEecCCC-cCccCCCCceeeEEEeeHHHHhhh
Confidence            111   1234556666543322 112234678899999999999874

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.54  E-value=5.3e-14  Score=126.41  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=74.3

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQR  102 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~  102 (244)
                      ...++++||.+.+ ++|||+||..    +|.|+||||++|.| ++++|+.||+.||||+.+.....+..+.+. ......
T Consensus       239 ~~~~~~~vi~~~~-g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~  316 (369)
T 3fsp_A          239 QVPLAVAVLADDE-GRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQ  316 (369)
T ss_dssp             EEEEEEEEEECSS-SEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEE
T ss_pred             eEEEEEEEEEeCC-CEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEE
Confidence            4456667777665 4999999986    58999999999999 999999999999999998765544433222 122334


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      +++|.+....+        ..|..++.|++++++.++
T Consensus       317 ~~~~~~~~~~~--------~~e~~~~~Wv~~~el~~~  345 (369)
T 3fsp_A          317 LTVFPGRLVHG--------GPVEEPYRLAPEDELKAY  345 (369)
T ss_dssp             EEEEEEEECCS--------SCCCTTEEEEEGGGGGGS
T ss_pred             EEEEEEEEcCC--------CCCccccEEeeHHHhhhC
Confidence            55555543221        356788999999999873

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.53  E-value=8.6e-15  Score=121.84  Aligned_cols=96  Identities=15%  Similarity=0.155  Sum_probs=67.5

Q ss_pred             CEEEEEEeeCCCcEEeCeeecCCCC-CHHHHHHHHHHhhcCCCCCccc-----ccceeeeeee-CeEEEEEEEEEeecCC
Q 026059           42 ERCILVKGWKGSSWSFPRGKKNKDE-EDHACAIREVQEETGFDVSKLL-----NKDEFIEKIF-GQQRVRLYIIAGVRDD  114 (244)
Q Consensus        42 ~kvLLvkr~~~~~w~~PgG~ve~gE-s~~eaa~REl~EEtGl~v~~l~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~  114 (244)
                      +++||++| ..|.|+||||++|+|| ++++||.||++||||+.+..+.     .+..... .+ ....+++|.+....+.
T Consensus        56 ~~vLl~~r-~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~  133 (212)
T 1u20_A           56 RVLLMMMR-FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVR-EHPQKCVTHFYIKELKLEE  133 (212)
T ss_dssp             EEEEEEEE-TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEE-CTTSCEEEEEEEEECCHHH
T ss_pred             CEEEEEEe-CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccc-cCCCcEEEEEEEEEecCCC
Confidence            48888887 4799999999999999 9999999999999999987432     2222211 11 3456677766543321


Q ss_pred             CC------c-CCCCCCceeeEEEEccccccCC
Q 026059          115 TA------F-APQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       115 ~~------~-~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ..      . ....+.|..++.|++++++.+.
T Consensus       134 ~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~  165 (212)
T 1u20_A          134 IERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  165 (212)
T ss_dssp             HHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             cccccccccccccCCcceEEEEEEEHHHhhhh
Confidence            00      0 0123568899999999999763

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.48  E-value=3.1e-13  Score=114.28  Aligned_cols=107  Identities=8%  Similarity=0.102  Sum_probs=74.9

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCC------CC---HHHHHHHHHHhhcCCCCCc-----
Q 026059           27 VRVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKD------EE---DHACAIREVQEETGFDVSK-----   86 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~g------Es---~~eaa~REl~EEtGl~v~~-----   86 (244)
                      ....++++++++.++ ++||++|..     +|.|++| ||+++.|      |+   +.+||+||++||||+.+..     
T Consensus        57 ~~h~av~v~v~~~~g-~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~  135 (235)
T 2dho_A           57 LLHRAFSVFLFNTEN-KLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEE  135 (235)
T ss_dssp             CCEEEEEEEEECTTC-CEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGG
T ss_pred             ceEEEEEEEEEcCCC-EEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhh
Confidence            344566777887764 999998865     5899999 5999999      88   5999999999999998652     


Q ss_pred             ccccceeee--eee----CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           87 LLNKDEFIE--KIF----GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        87 l~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +..+..+..  ...    .+....+|.+.. ...  .. .+++|+.+++|++++++.+
T Consensus       136 l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~--~~-~~~~Ev~~~~wv~~~el~~  189 (235)
T 2dho_A          136 INYLTRIHYKAQSDGIWGEHEIDYILLVRM-NVT--LN-PDPNEIKSYCYVSKEELKE  189 (235)
T ss_dssp             SEEEEEEEEEEECSSSBEEEEEEEEEEEEC-CCC--CC-CCTTTEEEEEEECHHHHHH
T ss_pred             cEEEEEEEEeccCCCccceeEEEEEEEEEE-CCC--Cc-CChHHEEEEEEEcHHHHHH
Confidence            333333221  111    123456666553 222  22 2468999999999999976

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.48  E-value=2e-13  Score=119.04  Aligned_cols=97  Identities=13%  Similarity=0.176  Sum_probs=64.5

Q ss_pred             EEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC-----------cccccce------eeeee-e--C---
Q 026059           43 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-----------KLLNKDE------FIEKI-F--G---   99 (244)
Q Consensus        43 kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~-----------~l~~~~~------~~~~~-~--~---   99 (244)
                      ++||++|...|.|.+|||+||.||++.+||+||++||||+.+.           .+..+..      +.... .  .   
T Consensus       140 ~vLl~~r~~~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~d~  219 (292)
T 1q33_A          140 QFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDN  219 (292)
T ss_dssp             EEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSS
T ss_pred             EEEEEEecCCCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCCCcc
Confidence            7999998878999999999999999999999999999999831           1222221      11111 0  1   


Q ss_pred             eEE-EEEEEEEeecCCC--CcCCCCCCceeeEEEEccccccCC
Q 026059          100 QQR-VRLYIIAGVRDDT--AFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       100 ~~~-~~~~~~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ... ..+|.+....+..  ......++|+.++.|+++++++.+
T Consensus       220 ~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L  262 (292)
T 1q33_A          220 AWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKL  262 (292)
T ss_dssp             EEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCC
T ss_pred             cEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCccc
Confidence            122 2334333222211  112334678999999999999864

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.46  E-value=3.7e-13  Score=114.50  Aligned_cols=107  Identities=11%  Similarity=0.125  Sum_probs=75.1

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeCe-eecCCC------CCH---HHHHHHHHHhhcCCCCCc-----
Q 026059           27 VRVPVTGAIILDETYERCILVKGWK-----GSSWSFPR-GKKNKD------EED---HACAIREVQEETGFDVSK-----   86 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~Pg-G~ve~g------Es~---~eaa~REl~EEtGl~v~~-----   86 (244)
                      ....++.+++++.++ ++||+||..     +|.|++|+ |+++.|      |++   .+||+||++||||+.+..     
T Consensus        68 ~~h~av~v~v~~~~g-~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~  146 (246)
T 2pny_A           68 LLHRAFSVVLFNTKN-RILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPED  146 (246)
T ss_dssp             CCEEEEEEEEECTTC-CEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGG
T ss_pred             cEEEEEEEEEEeCCC-EEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccc
Confidence            345566777888664 899998865     58999995 999999      886   999999999999998752     


Q ss_pred             ccccceeee--ee----eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           87 LLNKDEFIE--KI----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        87 l~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +..+..+..  ..    ..+....+|.+.. ...  .. .+++|+.+++|++++++.+
T Consensus       147 l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~--~~-~~~~Ev~~~~wv~~eel~~  200 (246)
T 2pny_A          147 IVFMTIYHHKAKSDRIWGEHEICYLLLVRK-NVT--LN-PDPSETKSILYLSQEELWE  200 (246)
T ss_dssp             SEEEEEEEEEEESSSSBEEEEEEEEEEEEC-CCC--CC-CCTTTEEEEEEECHHHHHH
T ss_pred             cEEEEEEEEEecCCCceeeeEEEEEEEEEE-CCC--CC-CChHHeeEEEEEeHHHHHH
Confidence            333333221  11    1123455665553 222  22 3468999999999999976

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.43  E-value=2.2e-13  Score=113.85  Aligned_cols=95  Identities=15%  Similarity=0.103  Sum_probs=63.0

Q ss_pred             EEEEEEeeCCCcEEeCeeecCCCC-CHHHHHHHHHHhhcCCCCCc--ccccceeee-eee-CeEEEEEEEEEeecCCCC-
Q 026059           43 RCILVKGWKGSSWSFPRGKKNKDE-EDHACAIREVQEETGFDVSK--LLNKDEFIE-KIF-GQQRVRLYIIAGVRDDTA-  116 (244)
Q Consensus        43 kvLLvkr~~~~~w~~PgG~ve~gE-s~~eaa~REl~EEtGl~v~~--l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~-  116 (244)
                      ++||+.|. .+.|++|||++|+|| ++++||+||++||||+.+..  +..+..+.. ... ......+|.+....+... 
T Consensus        66 ~~ll~~r~-~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~~~~~~  144 (217)
T 2xsq_A           66 AILMQMRF-DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLA  144 (217)
T ss_dssp             EEEEEEET-TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCHHHHHH
T ss_pred             cEEEEEcc-CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEecccccee
Confidence            46665554 789999999999999 99999999999999998873  433333322 122 233444454443222110 


Q ss_pred             -----c-CCCCCCceeeEEEEccccccC
Q 026059          117 -----F-APQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       117 -----~-~~~~~~E~~~~~W~~~~el~~  138 (244)
                           . ....+.|..++.|+|++++.+
T Consensus       145 ~e~~~~~~~~~~~E~~~v~~vPl~~l~d  172 (217)
T 2xsq_A          145 VEAGATRAKDHGLEVLGLVRVPLYTLRD  172 (217)
T ss_dssp             HHHHGGGSTTBTTTEEEEEECCCSBCTT
T ss_pred             cccccccccccCCceeeEEEEEHHHhhh
Confidence                 0 112256889999999999974

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.30  E-value=7.7e-12  Score=105.40  Aligned_cols=43  Identities=26%  Similarity=0.406  Sum_probs=39.0

Q ss_pred             EEEEEEeeC-----CCcEEeCeeecCCCCC--------------------HHHHHHHHHHhhcCCCCC
Q 026059           43 RCILVKGWK-----GSSWSFPRGKKNKDEE--------------------DHACAIREVQEETGFDVS   85 (244)
Q Consensus        43 kvLLvkr~~-----~~~w~~PgG~ve~gEs--------------------~~eaa~REl~EEtGl~v~   85 (244)
                      +|||+||..     .|.|.||||+||++|+                    +..||+||++||||+.+.
T Consensus        25 ~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~   92 (232)
T 3qsj_A           25 EVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLA   92 (232)
T ss_dssp             EEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCS
T ss_pred             EEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceec
Confidence            899999987     5899999999999887                    589999999999999764

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.28  E-value=1.8e-11  Score=100.04  Aligned_cols=69  Identities=22%  Similarity=0.325  Sum_probs=60.6

Q ss_pred             cchHHHHHHhhcCcccccEEEEEEEeCCC-CEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCC
Q 026059           13 AHIDDIFKDFTSYKVRVPVTGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF   82 (244)
Q Consensus        13 ~~~~~~~~~~~~y~~~v~vv~~ii~~~~~-~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl   82 (244)
                      +....+...|.+|..+..|+++|+.++.+ .+|||+|+. .+.|.+|||++|+||+.++|+.||+.||+|.
T Consensus        43 ~r~~rl~~~y~~~g~R~sV~avil~~~~~~phVLLlq~~-~~~f~LPGGkle~gE~~~eaL~REL~EELg~  112 (208)
T 3bho_A           43 ARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLG-TTFFKLPGGELNPGEDEVEGLKRLMTEILGR  112 (208)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEEEEEEETTEEEEEEEEEE-TTEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhhCCceEEEEEEEEcCCCCcEEEEEEcC-CCcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence            45667777899999999999999887653 379999974 6799999999999999999999999999996

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.24  E-value=5.7e-11  Score=103.54  Aligned_cols=106  Identities=12%  Similarity=0.005  Sum_probs=71.0

Q ss_pred             EEEEEEeCCC--CEEEEEEeeC-----CCcE-EeCeeecCCCCCHHHHHHHHHHhhcCCCCCccc---ccce--eeee--
Q 026059           32 TGAIILDETY--ERCILVKGWK-----GSSW-SFPRGKKNKDEEDHACAIREVQEETGFDVSKLL---NKDE--FIEK--   96 (244)
Q Consensus        32 v~~ii~~~~~--~kvLLvkr~~-----~~~w-~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~---~~~~--~~~~--   96 (244)
                      +-+.+++.++  .++||.||..     +|.| .+++|++++||++.+||+||+.||+|+.+..+.   ....  |...  
T Consensus       121 vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~~  200 (300)
T 3dup_A          121 VHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESP  200 (300)
T ss_dssp             EEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEET
T ss_pred             EEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEecC
Confidence            3444444432  3899999876     7999 589999999999999999999999999875322   1211  2111  


Q ss_pred             -eeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           97 -IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        97 -~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                       +......++|.+.. ..+.... .+++|+.++.|++++++.+.
T Consensus       201 ~G~~~E~~~vy~~~l-~~~~~p~-~~~~EV~~~~~v~~~El~~~  242 (300)
T 3dup_A          201 AGIKPDTLFLYDLAL-PEDFRPH-NTDGEMADFMLWPAAKVVEA  242 (300)
T ss_dssp             TEEEEEEEEEEEEEC-CTTCCCC-CTTSSEEEEEEEEHHHHHHH
T ss_pred             CCeEEEEEEEEEEEe-cCCCcCC-CCchHhheEEEECHHHHHHH
Confidence             12233445554433 3232222 34789999999999999873

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.17  E-value=5.1e-11  Score=104.92  Aligned_cols=114  Identities=13%  Similarity=0.112  Sum_probs=72.6

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhc-CCCCCcccccceeeeeeeCeEEEEEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEET-GFDVSKLLNKDEFIEKIFGQQRVRLYIIA  109 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEt-Gl~v~~l~~~~~~~~~~~~~~~~~~~~~~  109 (244)
                      ++++|+.+++  +|||+  ...| |.+|||.++.+++  ++|+||++||| |+.++....+..|..... ++...+|.+.
T Consensus       185 ~vgaii~~~g--~vLL~--~~~G-W~LPG~~~~~~~~--~~a~RE~~EEttGl~v~~~~L~~v~~~~~~-~~~~i~f~~~  256 (321)
T 3rh7_A          185 RLGAVLEQQG--AVFLA--GNET-LSLPNCTVEGGDP--ARTLAAYLEQLTGLNVTIGFLYSVYEDKSD-GRQNIVYHAL  256 (321)
T ss_dssp             EEEEEEESSS--CEEEB--CSSE-EBCCEEEESSSCH--HHHHHHHHHHHHSSCEEEEEEEEEEECTTT-CCEEEEEEEE
T ss_pred             eEEEEEEECC--EEEEe--eCCC-ccCCcccCCCChh--HHHHHHHHHHhcCCEEeeceEEEEEEcCCC-ceEEEEEEEE
Confidence            4588887764  89999  4467 9999987655554  59999999997 999984322222222222 2233455555


Q ss_pred             eecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcCCCCC
Q 026059          110 GVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIA  175 (244)
Q Consensus       110 ~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~~~~~  175 (244)
                      ...+.          ..+++|+++++|+...-.             ....-..|++|+++++...+
T Consensus       257 ~~~g~----------~~e~~~f~~~elp~~~~~-------------~~~~~~~L~~y~~e~~~g~f  299 (321)
T 3rh7_A          257 ASDGA----------PRQGRFLRPAELAAAKFS-------------SSATADIINRFVLESSIGNF  299 (321)
T ss_dssp             ECSSC----------CSSSEEECHHHHTTCEES-------------SHHHHHHHHHHHHTTSCSSC
T ss_pred             eCCCC----------eeeeEEECHHHCCCcccC-------------CHHHHHHHHHHHHHhhcCCC
Confidence            43321          267899999999984210             11223556778887766544

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.04  E-value=3e-10  Score=91.96  Aligned_cols=109  Identities=10%  Similarity=0.019  Sum_probs=66.8

Q ss_pred             cEEEEEEEeCCCCE---------EEEEEeeCCCcEEeCeeecCCCC-CHHHHHHHHHHhhcCC-CCCcccccceeeeeee
Q 026059           30 PVTGAIILDETYER---------CILVKGWKGSSWSFPRGKKNKDE-EDHACAIREVQEETGF-DVSKLLNKDEFIEKIF   98 (244)
Q Consensus        30 ~vv~~ii~~~~~~k---------vLLvkr~~~~~w~~PgG~ve~gE-s~~eaa~REl~EEtGl-~v~~l~~~~~~~~~~~   98 (244)
                      ..|-++++.++.++         .+|++-+..|.|+||||+||+|| |+++|+.||+.||+|+ .+.....+..+.....
T Consensus        22 hach~mlya~~~~~lfg~~p~r~~iLmQ~R~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp  101 (214)
T 3kvh_A           22 HSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP  101 (214)
T ss_dssp             EEEEEEEEEEEEEEETTTEEEEEEEEEEEETTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC---
T ss_pred             EeeEEEEEcCCccccccccchhheEEEeeeeCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC
Confidence            45566666544212         24444445799999999999999 9999999999999997 4554333332221111


Q ss_pred             CeEEEEEEEEEeecCCCC------cCCCC-CCceeeEEEEccccccC
Q 026059           99 GQQRVRLYIIAGVRDDTA------FAPQT-KKEISEIAWQRLDELQP  138 (244)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~------~~~~~-~~E~~~~~W~~~~el~~  138 (244)
                      .....++|.+....++..      ....+ +-|+.+..-+|+=.+.+
T Consensus       102 ~~V~LHfY~crl~~Ge~~~lE~~A~~A~d~G~EvlGlvRVPlytl~D  148 (214)
T 3kvh_A          102 HRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLVRVPLYTQKD  148 (214)
T ss_dssp             -CEEEEEEEEECCHHHHHHHHHHHHTSTTBTTTEEEEEEECCCBCTT
T ss_pred             CEEEEEEEEEEeeCCccchhhhcccCCcccCceecceEEeeeEEecc
Confidence            245567787765543211      11222 56888999999766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	5e-37
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	2e-14
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	6e-13
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	2e-12
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	1e-11
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	1e-10
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-10
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	1e-08
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	5e-08
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	9e-08
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-07
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	2e-07
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	4e-07
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	3e-06
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	4e-06
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	6e-06
d1puna_	129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	1e-05
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	1e-05
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	2e-05
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	4e-05
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	5e-05
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	1e-04
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	5e-04
d2qklb1	90	a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-	0.001

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score =  125 bits (315), Expect = 5e-37
 Identities = 75/145 (51%), Positives = 92/145 (63%), Gaps = 3/145 (2%)

Query: 28  RVPVTGAIILDETYERCILVKGWKGS-SWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 86
           R+PV GAI+LD + ++C+LVKGWK S  W FP+GK +KDE D  CAIREV EETGFD S 
Sbjct: 1   RIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS 60

Query: 87  LLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISH 146
            +N +EFI+     Q VRLYII G+  DT F  +T+KEIS+I W  L +L     +    
Sbjct: 61  RINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQT 120

Query: 147 GVTGLKLYMVAPFLASLKKWISAHK 171
                K YMV PFLA LKKWI    
Sbjct: 121 --MKNKFYMVIPFLAPLKKWIKKRN 143

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 66.7 bits (162), Expect = 2e-14
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 23  TSYKVRVPVTGAIILDETYERCILVK-------GWKGSSWSFPRGKKNKDEEDHACAIRE 75
           T   V +   G ++L+E     +LV+         K   W  P G     E     A+RE
Sbjct: 6   THVPVELRAAGVVLLNER-GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVRE 64

Query: 76  VQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLD 134
             EETG  V  +     ++ +      +  ++ +A        AP    EI+E ++   +
Sbjct: 65  ACEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSRE 124

Query: 135 EL 136
           + 
Sbjct: 125 DF 126

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 6e-13
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 21  DFTSYKVRVPVTGAIILDETYE-RCILVKGWKGS-SWSFPRGKKNKDEEDHACAIREVQE 78
           D   YK R      +      E   +LV   +    W  P G    +EE    A+REV E
Sbjct: 6   DGDGYKKRA---ACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCE 62

Query: 79  ETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           E G     L       E    + R  +Y++  V +       +     +  W ++++ 
Sbjct: 63  EAGVKG-TLGRLVGIFENQERKHRTYVYVLI-VTEVLEDWEDSVNIGRKREWFKIEDA 118

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 5/120 (4%)

Query: 20  KDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEE 79
           ++  +Y+ R      I+        +LV+   G+ +  P G+    E       REV EE
Sbjct: 9   EETLTYQTRYAA-YIIVSKPENNTMVLVQAPNGA-YFLPGGEIEGTETKEEAIHREVLEE 66

Query: 80  TGFDVS---KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
            G  V     L   DE+      Q          V +      +  +  + + W   +E 
Sbjct: 67  LGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEA 126

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 58.5 bits (141), Expect = 1e-11
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 33  GAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNK 90
           G ++ +   +R +L+   +   W FP+G     E     A+REV EETG        L  
Sbjct: 6   GGVVFNA--KREVLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYP 63

Query: 91  DEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
             ++     ++ V  +++         AP+ ++ ++   W   +E 
Sbjct: 64  TRYVNPKGVEREVHWFLM-----RGEGAPRLEEGMTGAGWFSPEEA 104

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 1e-10
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 31  VTGAIILDETYERCILVK---GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 87
            T  ++L    +R +L     G+    W+   GK  + E     A RE+QEE+G  V  L
Sbjct: 7   YTLVLVLQP--QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDAL 64

Query: 88  LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
               + + +  G+  +    +             + +     W +LD++
Sbjct: 65  HKVGQIVFEFVGEPELMDVHVFCTDSIQ--GTPVESDEMRPCWFQLDQI 111

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 31  VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 90
           VT  ++++    + +LVK  +   + +P G    +E       RE +EETG  V  +   
Sbjct: 3   VTSGVLVEN--GKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFT 60

Query: 91  DEFIEKIFGQQRVRLYIIAGVR----------DDTAFAPQTKKEISEIAWQRLDEL 136
              I++   ++ + L I+  V           D      +   ++    W  + E+
Sbjct: 61  YGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREI 116

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 12/136 (8%)

Query: 31  VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFD--VS 85
              A+I  +  ++ +LV+          + P G     E       REV EETG      
Sbjct: 5   TVAAVIEQD--DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPE 62

Query: 86  KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVIS 145
            L     +     G   +R      V             I   AW  +DE++       +
Sbjct: 63  VLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLD-TGIVRAAWFSIDEIRAKQAMHRT 121

Query: 146 HGVTGLKLYMVAPFLA 161
             V    +  +  + A
Sbjct: 122 PLV----MQCIEDYHA 133

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 11/114 (9%)

Query: 29  VPVTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84
           +     +I D   +R ++        + S ++FP G    DE      IRE+ EETG  +
Sbjct: 8   ILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTI 67

Query: 85  S--KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
              +L+    +     G+  V  Y                 E  E++W + D++
Sbjct: 68  QNPQLVGIKNWPLDTGGRYIVICYKATEFSGTLQ-----SSEEGEVSWVQKDQI 116

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 48.3 bits (114), Expect = 9e-08
 Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 18/144 (12%)

Query: 16  DDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS---WSFPRGKKNKDEEDHACA 72
            + F         V +   I+ +      +L K     +   W  P G+  KDE   A  
Sbjct: 6   QEDFATVVRSTPLVSL-DFIVENSR-GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAF 63

Query: 73  IREVQEETGFDVSKL----------LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTK 122
            R    E G  +                D F    F    V L     V ++    P   
Sbjct: 64  ERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLP--D 121

Query: 123 KEISEIAWQRLDELQPASDDVISH 146
           ++  +  W   D L  ASD+V ++
Sbjct: 122 EQHDDYRWLTSDAL-LASDNVHAN 144

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 34  AIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL----N 89
             + +   E  +L        W+ P+G     E+D   A+R  QEE G +  +L      
Sbjct: 22  PKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGF 81

Query: 90  KDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           K E       + +  +Y +A V+D      +   E     W  L+E 
Sbjct: 82  KRELNYVARNKPKTVIYWLAEVKDYD-VEIRLSHEHQAYRWLGLEEA 127

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 8/109 (7%)

Query: 30  PVTGAIILDETYERCILVK--GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 87
           P     I  +  +  +L +    +    +   G     E       REV EE+G  V   
Sbjct: 4   PCIIVAIRRD--DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVK-- 59

Query: 88  LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
            N      + +   +  +       D         KE+ E  W R D+L
Sbjct: 60  -NLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDP-KELLEANWYRYDDL 106

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 8/135 (5%)

Query: 26  KVRVPVTGAIILDETYE-----RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEET 80
            +R   T  ++ D   +     R        G   +   G    DE+    A RE +EE 
Sbjct: 27  CLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEEL 86

Query: 81  GFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS 140
           G          +F  +    +      +        FA Q + E+SE+ W   +E+    
Sbjct: 87  GIAGVPFAEHGQFYFEDKNCRVW--GALFSCVSHGPFALQ-EDEVSEVCWLTPEEITARC 143

Query: 141 DDVISHGVTGLKLYM 155
           D+     +  L L+M
Sbjct: 144 DEFTPDSLKALALWM 158

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.4 bits (101), Expect = 3e-06
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 29  VPVTGAIIL---DETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 85
           V   G +I        E  +L   +    W+ P+G  +  E++   AIRE +EE      
Sbjct: 2   VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKE 61

Query: 86  KLLNKDEFIEKIF--GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
           +L   ++  E +F   + + +       + +     Q   E     W  L++ 
Sbjct: 62  QLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDA 114

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 28  RVPVTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFD 83
             P    I L E   R + V+        +    P G     E+    A RE+ E+TG  
Sbjct: 23  HKPAVAVIALRE--GRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS 80

Query: 84  VSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDE-LQPASDD 142
                    F+   F  ++  +++   +++  A   +   E  E+ W R +E L+     
Sbjct: 81  GDLTYLFSYFVSPGFTDEKTHVFLAENLKEVEAHPDED--EAIEVVWMRPEEALERHQRG 138

Query: 143 VISHGVTGL 151
            +    TGL
Sbjct: 139 EVEFSATGL 147

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 43.2 bits (101), Expect = 6e-06
 Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 8/141 (5%)

Query: 28  RVPVTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFD 83
                  +I+    +  IL++    G +     F +G  +  E  +  A RE++EE GF 
Sbjct: 45  PTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFG 104

Query: 84  VSKL-LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL-QPASD 141
            + L   K   +   +   ++ + +   +  ++      + E        L  +     D
Sbjct: 105 ANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPES--LEGDEPEPLPQVRWPLAHMMDLLED 162

Query: 142 DVISHGVTGLKLYMVAPFLAS 162
              +       L++V  +L  
Sbjct: 163 PDFNEARNVSALFLVREWLKG 183

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 11/114 (9%)

Query: 28  RVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
           ++ +   II +E     I +          +   FP GK    E      +RE+QEE G 
Sbjct: 3   KLQIAVGIIRNE--NNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60

Query: 83  DVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
                   ++   +   +     + +    +   +     KE     W  L  L
Sbjct: 61  TPQHFSLFEKLEYEFPDRHITLWFWLVERWEGEPWG----KEGQPGEWMSLVGL 110

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 16/129 (12%)

Query: 20  KDFTSYKVRVPVTGAIIL---DETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHAC 71
           ++   Y+        ++L    E  +  +L+       ++ S W+ P G  N++E     
Sbjct: 28  QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNS-WALPGGFVNRNESTEDS 86

Query: 72  AIREVQEETGFDVSKLLNK----DEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISE 127
            +RE +EETG  +S+   +        ++      V +  +A + ++   A     +  E
Sbjct: 87  VLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAG---DDAKE 143

Query: 128 IAWQRLDEL 136
           + W  L+  
Sbjct: 144 VHWFNLERH 152

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 6/115 (5%)

Query: 27  VRVPVTGAIILDETYE-----RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETG 81
            RV V  A + +   +     R      +  +      G     E       RE +EE  
Sbjct: 26  ERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELN 85

Query: 82  FDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
            ++  L  +       F         +  +R D         +IS   W   + L
Sbjct: 86  VEIDALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFN-PNDISGGEWLTPEHL 139

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 17/82 (20%), Positives = 31/82 (37%)

Query: 55  WSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDD 114
            +FP G  +  E     A+RE QEE   D + +    E  +           ++  +  +
Sbjct: 63  IAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPE 122

Query: 115 TAFAPQTKKEISEIAWQRLDEL 136
                +   E+++I    L EL
Sbjct: 123 ALDTLRVTPEVAQIITPTLAEL 144

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 31/145 (21%)

Query: 20  KDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEE 79
           +D +  K+  PV+G  IL     + + +K      W+ P G  +  E+  A   RE  EE
Sbjct: 122 RDSSGNKIMHPVSGKHIL-----QFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEE 176

Query: 80  TGFDVSKLL----NKDEFIEKIFGQQRVRLYI----------------------IAGVRD 113
               + K        +E + K+F Q  + +Y                             
Sbjct: 177 ALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEI 236

Query: 114 DTAFAPQTKKEISEIAWQRLDELQP 138
                 +   +  ++ W  +++   
Sbjct: 237 MDNLMLEAGDDAGKVKWVDINDKLK 261

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 17/136 (12%)

Query: 45  ILVKGWKGSSWSFPRGKKNKDEED-HACAIREVQEETGFDVSKL-LNKDEFIEKIFGQQR 102
           +++  + G    FP G  +  +        RE++EE G  ++ + + +D++      +  
Sbjct: 46  LMMMRFDGR-LGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP 104

Query: 103 VRLYIIAGVRDDT--------AFAPQTK---KEISEIAWQRLDELQPASDDV---ISHGV 148
            +      +++          A A   K    E+  +    L  L+     +   + +  
Sbjct: 105 QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPAFLCNNF 164

Query: 149 TGLKLYMVAPFLASLK 164
            G     +   L SLK
Sbjct: 165 IGNSKSQLLYALRSLK 180

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 5/97 (5%)

Query: 50  WKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF----GQQRVRL 105
           W G   +   G     E +    IR  + E G +++   +             G     +
Sbjct: 28  WPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEV 87

Query: 106 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDD 142
             +   R  +A       E+ +  W  L ++    D 
Sbjct: 88  CPVFAARTTSALQIN-DDEVMDYQWCDLADVLHGIDA 123

>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 90

class: All alpha proteins
fold: Dcp2 domain-like
superfamily: Dcp2 domain-like
family: Dcp2 box A domain
domain: mRNA decapping enzyme Dcp2p, N-terminal domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 1  MFNSCDVLRPYVAHIDDIFKDF 22
          +F  C +L  +    ++ F DF
Sbjct: 67 LFAHCPLLWKWSKVHEEAFDDF 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.95
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.84
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.83
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.83
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.83
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.81
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.81
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.81
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.79
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.79
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.79
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.78
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.77
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.77
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.76
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.75
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.75
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.74
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.74
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.73
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.72
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.72
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.71
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.7
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.7
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.63
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.63
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.42
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.4
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.2

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.95  E-value=1.2e-27  Score=187.71  Aligned_cols=142  Identities=53%  Similarity=0.928  Sum_probs=105.7

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLY  106 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~  106 (244)
                      +++|+||||++.+.++|||+|+.. ++.|+||||++|.||++.+||+||++||||+++..+.....+..........++|
T Consensus         1 ~~~v~Gaii~~~~~~kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~   80 (151)
T d2a6ta2           1 RIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLY   80 (151)
T ss_dssp             CCCEEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTEEEEEE
T ss_pred             CccEEEEEEEECCCCEEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceEEeecccCceEEEE
Confidence            578999999998877999999866 7899999999999999999999999999999988655555555544444555666


Q ss_pred             EEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcC
Q 026059          107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK  171 (244)
Q Consensus       107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~  171 (244)
                      ++.....+....+.+.+|+.++.|+++++|+.+..+  ........++++.||+++|+.||++++
T Consensus        81 ~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~~~--~~~~~~~~~~~v~~fi~~L~~wi~~~~  143 (151)
T d2a6ta2          81 IIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKN--KPQTMKNKFYMVIPFLAPLKKWIKKRN  143 (151)
T ss_dssp             EECCCCTTCCCC------EEEEEEEEGGGSTTCC--------CCGGGTTTGGGHHHHHHHHHHHH
T ss_pred             EEEEeccCCcccccCCCccceEEEEEHHHhhhhhhc--ccccccchhhhHHHHHHHHHHHHHHhc
Confidence            665555554444555689999999999999885433  223344567889999999999998764

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.84  E-value=4.6e-21  Score=148.21  Aligned_cols=132  Identities=19%  Similarity=0.229  Sum_probs=87.3

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce--eeeeeeCeE
Q 026059           27 VRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIFGQQ  101 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~--~~~~~~~~~  101 (244)
                      +++.| ++||.+++  ++||++|..   .+.|.+|||++|.|||+.+||+||++||||+.+.....+..  +.....+.+
T Consensus         2 P~v~v-a~ii~~~~--k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   78 (146)
T d2b0va1           2 PNVTV-AAVIEQDD--KYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTT   78 (146)
T ss_dssp             CEEEE-EEECEETT--EEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEE
T ss_pred             CeEEE-EEEEEeCC--EEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCCeE
Confidence            34444 56666653  999999887   56899999999999999999999999999999875433332  222222223


Q ss_pred             E-EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhh-HHHHHHHHHhcCCCCC
Q 026059          102 R-VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPF-LASLKKWISAHKPSIA  175 (244)
Q Consensus       102 ~-~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~-~~~l~~~l~~~~~~~~  175 (244)
                      . ..+|.+.......  ....++|+.+++|++++++.+....            ...|. ...+.+|++..+.++.
T Consensus        79 ~~~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~~~~~------------~~~~~v~~~l~~y~~~~~~Pl~  140 (146)
T d2b0va1          79 YLRFTFSGQVVSFDP--DRKLDTGIVRAAWFSIDEIRAKQAM------------HRTPLVMQCIEDYHAGKRYPLD  140 (146)
T ss_dssp             EEEEEEEEEEEEECT--TSCCCTTEEEEEEEEHHHHHHTGGG------------BSSTHHHHHHHHHHTTCCBCGG
T ss_pred             EEEEEEEEEeecCCC--CCCCCcceeEEEEeeHHHHhhCccc------------cCCHHHHHHHHHHHhCCCCChh
Confidence            2 3334343333221  2334678999999999999764321            11243 5678888887665543

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.7e-20  Score=143.24  Aligned_cols=105  Identities=22%  Similarity=0.222  Sum_probs=78.9

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEE
Q 026059           29 VPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLY  106 (244)
Q Consensus        29 v~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~  106 (244)
                      .++|.+++.+++  ++||+++++  .|.|.+|||++|+|||+++||.||++||||+.+.....+..+. ....+....+|
T Consensus         3 ~paViv~i~~~~--~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~-~~~~~~~~~~f   79 (131)
T d1vk6a2           3 APCIIVAIRRDD--SILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQP-WPFPQSLMTAF   79 (131)
T ss_dssp             EEEEEEEEEETT--EEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEE-EETTEEEEEEE
T ss_pred             ccEEEEEEEeCC--EEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEec-cCcCceEEEEE
Confidence            355666666654  999998876  6899999999999999999999999999999988655444322 22344555566


Q ss_pred             EEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+....++.   ..++.|+.++.|+++++++.+
T Consensus        80 ~~~~~~~~~---~~~~~E~~~~~W~~~~el~~l  109 (131)
T d1vk6a2          80 MAEYDSGDI---VIDPKELLEANWYRYDDLPLL  109 (131)
T ss_dssp             EEEEEECCC---CCCTTTEEEEEEEETTSCCSC
T ss_pred             EEEEcCCcc---cCCCccEEEEEEEcHHHHhhC
Confidence            665554432   234688999999999999875

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.83  E-value=3.6e-20  Score=145.03  Aligned_cols=113  Identities=20%  Similarity=0.337  Sum_probs=84.3

Q ss_pred             cCcccccEEEEEEEeCCCCEEEEEEeeC-------CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee
Q 026059           24 SYKVRVPVTGAIILDETYERCILVKGWK-------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK   96 (244)
Q Consensus        24 ~y~~~v~vv~~ii~~~~~~kvLLvkr~~-------~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~   96 (244)
                      .++..+.++++|+++.+ +++||++|..       .|.|++|||++|+||++.+||+||++||||+.+..+..+..+...
T Consensus         7 ~~p~~~~a~~~vi~~~~-g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~   85 (158)
T d1sjya_           7 HVPVELRAAGVVLLNER-GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGR   85 (158)
T ss_dssp             CCCCCEEEEEEEEBCTT-CCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEE
T ss_pred             cCCCceeEEEEEEEeCC-CEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEEEEEE
Confidence            35557778888888877 4999999865       478999999999999999999999999999998865555433221


Q ss_pred             --eeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           97 --IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        97 --~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                        .......++|.+....+. ...+..++|+.++.|++++++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~E~~~~~w~~~~el~~  128 (158)
T d1sjya_          86 FPDGVLILRHVWLAEPEPGQ-TLAPAFTDEIAEASFVSREDFAQ  128 (158)
T ss_dssp             CTTSCEEEEEEEEEEECSSC-CCCCCCCSSEEEEEEECHHHHHH
T ss_pred             CCCCCEEEEEEEEEEEcCCc-ccCCCCCcceEEEEEEEHHHHhh
Confidence              222334556666554433 22344467999999999999976

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=3e-20  Score=140.78  Aligned_cols=101  Identities=21%  Similarity=0.364  Sum_probs=73.6

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee--eeeCeEEEEEEEE
Q 026059           31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KIFGQQRVRLYII  108 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~--~~~~~~~~~~~~~  108 (244)
                      .|++||+++++ ++||+++. .|.|.+|||++|.|||+.+||+||++||||+++..+..+.....  .......+++|.+
T Consensus         4 ~agavv~~~~~-~vLl~~~~-~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
T d1vcda1           4 GAGGVVFNAKR-EVLLLRDR-MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFLM   81 (126)
T ss_dssp             EEEEEEECTTS-CEEEEECT-TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEEEEEEECCC-EEEEEEcC-CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCCeEEEEEEEEE
Confidence            45788888774 89998764 68999999999999999999999999999999886544443222  1122233444444


Q ss_pred             EeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          109 AGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      . ..+.    +..++|+.+++|++++++.+
T Consensus        82 ~-~~~~----~~~~~e~~~~~W~~~~e~~~  106 (126)
T d1vcda1          82 R-GEGA----PRLEEGMTGAGWFSPEEARA  106 (126)
T ss_dssp             E-EESC----CCCCTTCCEEEEECHHHHHH
T ss_pred             E-EcCC----CCCCccceEEEEEEHHHHhh
Confidence            3 3332    33457888999999999976

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.81  E-value=8.1e-20  Score=143.08  Aligned_cols=110  Identities=21%  Similarity=0.274  Sum_probs=78.0

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc--eeeeeee
Q 026059           25 YKVRVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD--EFIEKIF   98 (244)
Q Consensus        25 y~~~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~--~~~~~~~   98 (244)
                      .+.++.+..|+|.+.+++++||++|..    .+.|+||||++|+|||+.+||.||++||||+.+.....+.  .+.....
T Consensus         4 ~~~~~~~~~~~i~~~~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~   83 (155)
T d2b06a1           4 SQLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTG   83 (155)
T ss_dssp             GGCEEEEEEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTS
T ss_pred             CCcEEEEEEEEEEECCCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCC
Confidence            344555556677777767999999875    3679999999999999999999999999999987543332  2222223


Q ss_pred             CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+....+|.+....+.     ....|..++.|+++++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~-----~~~~e~~~~~W~~~~el~~l  119 (155)
T d2b06a1          84 GRYIVICYKATEFSGT-----LQSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             CEEEEEEEEECEEEEC-----CCCBTTBEEEEEEGGGGGGS
T ss_pred             CeEEEEEEEEEecCCc-----cCCCchheEEEEEHHHhccC
Confidence            3344555655444332     22457789999999999874

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.6e-19  Score=141.20  Aligned_cols=126  Identities=19%  Similarity=0.250  Sum_probs=88.8

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQ  101 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~  101 (244)
                      .+.++.+++++.++ ++||++|..     +|.|++| ||++++|||+++||+||++||||+....+..+..+........
T Consensus        29 ~h~~v~v~v~~~~g-~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~  107 (161)
T d2fkba1          29 RHRATYIVVHDGMG-KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCR  107 (161)
T ss_dssp             CEEEEEEEEECSSS-CEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEE
T ss_pred             cEeEEEEEEEeCCC-CEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEEEEeecCCcE
Confidence            34577788888874 999999864     6899987 8999999999999999999999999877666655433322222


Q ss_pred             -EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhc
Q 026059          102 -RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAH  170 (244)
Q Consensus       102 -~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~  170 (244)
                       ...+|.+ ...+.  . ..+++|+.++.|++++++.+...+..            ...+..+..|++++
T Consensus       108 ~~~~~~~~-~~~~~--~-~~~~~Ev~~~~w~~~~el~~~~~~~~------------P~~~~al~~~~~r~  161 (161)
T d2fkba1         108 VWGALFSC-VSHGP--F-ALQEDEVSEVCWLTPEEITARCDEFT------------PDSLKALALWMKRN  161 (161)
T ss_dssp             EEEEEEEE-ECCCC--C-CCCTTTEEEEEEECHHHHHTTGGGBC------------HHHHHHHHHHHHHC
T ss_pred             EEEEEEEE-EECCC--C-cCChhHeeEEEEEeHHHHhhhhhccC------------CcHHHHHHHHHhcC
Confidence             3334433 22222  2 23468999999999999987432211            12467788888764

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.9e-20  Score=141.11  Aligned_cols=106  Identities=19%  Similarity=0.301  Sum_probs=77.5

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee-eCeEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-FGQQR  102 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~-~~~~~  102 (244)
                      ++.++++||.+.+ +++||+||..    +|.|+||||++|.|||+.+||.||++||||+.+.....+..+.... ..+..
T Consensus         3 ~i~vav~ii~~~~-~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~   81 (129)
T d1puna_           3 KLQIAVGIIRNEN-NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHIT   81 (129)
T ss_dssp             EEEEEEEECBCTT-SCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEEEE
T ss_pred             ccEEEEEEEEECC-CEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEeeccccccee
Confidence            3556677777766 4999999865    6899999999999999999999999999999998655544332222 22344


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .++|.+....+.    +. ..|+.++.|++++++...
T Consensus        82 ~~~~~~~~~~~~----~~-~~E~~~~~W~~~~el~~~  113 (129)
T d1puna_          82 LWFWLVERWEGE----PW-GKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             EEEEECCCCSSC----CC-TTSSSCCEEECGGGCCTT
T ss_pred             EEEEEEeeccCc----CC-CCccceEEEEEHHHcccC
Confidence            455555433332    22 467788999999999763

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.79  E-value=7e-19  Score=134.07  Aligned_cols=107  Identities=21%  Similarity=0.381  Sum_probs=74.5

Q ss_pred             ccEEEEEEEeC--CCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee----eeeC-e
Q 026059           29 VPVTGAIILDE--TYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE----KIFG-Q  100 (244)
Q Consensus        29 v~vv~~ii~~~--~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~----~~~~-~  100 (244)
                      +.++|+|+++.  ++.++||++|.. .|.|.+|||++|.||++.+||+||++||||+++..+.....+..    .... .
T Consensus         2 vraag~vv~~~~~~~~~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   81 (137)
T d1ktga_           2 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKP   81 (137)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEE
T ss_pred             EEEEEEEEEEEcCCCEEEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCCCcce
Confidence            45677777653  223789998876 78999999999999999999999999999999875443322111    1122 2


Q ss_pred             EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          101 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ..+.+|.+. .....  ....++|+.++.|++++++.+
T Consensus        82 ~~~~~~~~~-~~~~~--~~~~~~E~~~~~W~~~~e~~~  116 (137)
T d1ktga_          82 KSVKYWLAK-LNNPD--DVQLSHEHQNWKWCELEDAIK  116 (137)
T ss_dssp             EEEEEEEEE-ECSCC--CCCCCTTEEEEEEECHHHHHH
T ss_pred             EEEEEEEEE-ecCCC--CcCCCcceEEEEEEEHHHHHH
Confidence            233344333 33332  223457899999999999976

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.79  E-value=1.6e-19  Score=142.84  Aligned_cols=108  Identities=19%  Similarity=0.360  Sum_probs=75.5

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc--eeee-----------
Q 026059           30 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD--EFIE-----------   95 (244)
Q Consensus        30 ~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~--~~~~-----------   95 (244)
                      +.|++||+|++ ++|||+||.. .|.|++|||+||.|||+++||+||++||||+++..+....  .+..           
T Consensus        15 ~~Vg~vI~n~~-~~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (165)
T d1jkna_          15 RNVGICLMNND-KKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLN   93 (165)
T ss_dssp             EEEEEEEECTT-SCEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECCHHHHHHHH
T ss_pred             ccEEEEEEeCC-CEEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhccccccccccccccccccccceeeceee
Confidence            35588888887 4999999987 6999999999999999999999999999999987432111  0000           


Q ss_pred             ----eeeCeEEEEEEEEEeecCCCCcCC----CCCCceeeEEEEccccccC
Q 026059           96 ----KIFGQQRVRLYIIAGVRDDTAFAP----QTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        96 ----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~  138 (244)
                          ........++|.+.....+.....    ....|+.+++|++++++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~  144 (165)
T d1jkna_          94 IQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLID  144 (165)
T ss_dssp             HHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHH
T ss_pred             eeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHH
Confidence                111233444555544433322211    1235899999999999986

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.79  E-value=2e-19  Score=139.96  Aligned_cols=114  Identities=20%  Similarity=0.160  Sum_probs=76.7

Q ss_pred             CcccccEEEEEEE--eCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee--
Q 026059           25 YKVRVPVTGAIIL--DETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI--   97 (244)
Q Consensus        25 y~~~v~vv~~ii~--~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~--   97 (244)
                      +.+....|.+||+  ++++.+|||++|..   .|.|.+|||+++.||++++||+||++||||+++..+..+..+....  
T Consensus         6 ~p~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   85 (147)
T d2fb1a2           6 NPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAIDRD   85 (147)
T ss_dssp             SCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSS
T ss_pred             CCCcceEEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEecCCccc
Confidence            3333334445553  44434899999876   5899999999999999999999999999999988766655443322  


Q ss_pred             eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC
Q 026059           98 FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  140 (244)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  140 (244)
                      ...+.+.+++.+......  .+...+|..++.|+++++++++.
T Consensus        86 ~~~~~v~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~~lp~la  126 (147)
T d2fb1a2          86 PGERVVSIAYYALININE--YDRELVQKHNAYWVNINELPALI  126 (147)
T ss_dssp             SSSCEEEEEEEEECCTTS--SCHHHHHHTTEEEEETTSCCCBS
T ss_pred             CCCceEEEEEEEEecCCc--ccCCCcchhheEEecHHhchhcc
Confidence            123344333333333321  12234577889999999998754

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.6e-18  Score=135.89  Aligned_cols=120  Identities=18%  Similarity=0.149  Sum_probs=80.1

Q ss_pred             HHHHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCc--cccc
Q 026059           16 DDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNK   90 (244)
Q Consensus        16 ~~~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~--l~~~   90 (244)
                      ++.++...+..+. .++++||.+.+ ++|||++|..   .|.|.+|||+++.|||+.+||+||++||||+.+..  +..+
T Consensus         6 ~~~~~~~~~~~p~-~~v~~vi~~~~-~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~   83 (160)
T d1ryaa_           6 QEDFATVVRSTPL-VSLDFIVENSR-GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFY   83 (160)
T ss_dssp             HHHHHHHHHHSCE-EEEEEEEECTT-SCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEE
T ss_pred             HHHHHHHhhcCCE-EEEEEEEEeCC-CeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEE
Confidence            3445555555554 35677888877 4999999876   58999999999999999999999999999998763  2222


Q ss_pred             cee--eee------eeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           91 DEF--IEK------IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        91 ~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ..+  ...      ....+.+.+++.......  .....++|+.+++|++++++...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~E~~e~~W~~~~el~~~  138 (160)
T d1ryaa_          84 GVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEE--ELLLPDEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             EEEEEEESSBTTBSSSCEEEEEEEEEEECCGG--GCCCCSSSEEEEEEECHHHHHHC
T ss_pred             EEEEEeccccccCCCcceEEEEEEEEEEecCC--CccCCCcceEEEEEEEHHHhhcC
Confidence            221  111      112233333323222222  12334678999999999999763

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=8e-19  Score=141.71  Aligned_cols=107  Identities=16%  Similarity=0.238  Sum_probs=79.6

Q ss_pred             CEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceee-eeeeCeEEEEEEEEEeecCCCC
Q 026059           42 ERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI-EKIFGQQRVRLYIIAGVRDDTA  116 (244)
Q Consensus        42 ~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  116 (244)
                      +++||+++.+    ...|+||||++|+||++++||+||++||||+.+..+..+..++ .+.+....+++|++....... 
T Consensus        59 ~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~~~~~~~a~~~~~~~-  137 (186)
T d1vhza_          59 DHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPES-  137 (186)
T ss_dssp             TEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEEEEEEEEEECC-
T ss_pred             CEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeeccccccceEEEEEEEEeccccc-
Confidence            3899999776    3469999999999999999999999999999988777666543 234555667777776554331 


Q ss_pred             cCCCCCCceeeEEEEccccccCC--Ccccc-ccccch
Q 026059          117 FAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTG  150 (244)
Q Consensus       117 ~~~~~~~E~~~~~W~~~~el~~~--~~~~~-~~~~~a  150 (244)
                       ...+.+|..++.|++++++.++  ++++. ++++.|
T Consensus       138 -~~~de~E~~~~~~~~~~e~~~~i~~g~i~da~ti~a  173 (186)
T d1vhza_         138 -LEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSA  173 (186)
T ss_dssp             -CCCCCSSCCCEEEEEGGGGGGGGGCTTTCBHHHHHH
T ss_pred             -CCCCCCcEEEEEEEeHHHHHHHHHcCCCChHHHHHH
Confidence             2345678889999999999884  33444 455444

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1.7e-19  Score=142.06  Aligned_cols=112  Identities=21%  Similarity=0.361  Sum_probs=78.0

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceee-eeeeCeEE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI-EKIFGQQR  102 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~-~~~~~~~~  102 (244)
                      +.++|++++.+++  ++||+++.+    ...|++|||++|+||++++||+||++||||+.+. +..+..+. .+...+..
T Consensus        23 ~~~aV~vl~~~~~--~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~-~~~l~~~~~~~g~~~~~   99 (158)
T d1v8ya_          23 HKPAVAVIALREG--RMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGD-LTYLFSYFVSPGFTDEK   99 (158)
T ss_dssp             ECCEEEEEEEETT--EEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEE-EEEEEEEESCTTTBCCE
T ss_pred             cCCEEEEEEEECC--EEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcce-eeeecceecCCCcceEE
Confidence            4456677777753  999998765    5689999999999999999999999999999764 44444432 23344567


Q ss_pred             EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC--Ccccc
Q 026059          103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI  144 (244)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~--~~~~~  144 (244)
                      +++|++.......  ...+++|..++.|++++++.++  ++++.
T Consensus       100 ~~~f~a~~~~~~~--~~~d~~E~~ev~w~~~~e~~~~i~~g~i~  141 (158)
T d1v8ya_         100 THVFLAENLKEVE--AHPDEDEAIEVVWMRPEEALERHQRGEVE  141 (158)
T ss_dssp             EEEEEEEEEEECC----------CEEEEECHHHHHHHHHTTSCC
T ss_pred             EEEEEEccccccc--cCCCCCeeEEEEEEEHHHHHHHHHCCCCc
Confidence            7778776654331  2334568889999999999873  45554

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=1.8e-19  Score=147.35  Aligned_cols=123  Identities=20%  Similarity=0.385  Sum_probs=85.5

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecC-CCCCHHHHHHHHHHhhcCCCCCcccccceee-eeeeCeE
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKN-KDEEDHACAIREVQEETGFDVSKLLNKDEFI-EKIFGQQ  101 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve-~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~-~~~~~~~  101 (244)
                      +-++|+++.++++ +++||+++++    ...|+||+|++| +||++++||+||++||||+.+..+..+..+. ...+..+
T Consensus        37 ~~~~V~vl~~~~~-~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~~~  115 (202)
T d1mqea_          37 HFGAVAIVAMDDN-GNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDE  115 (202)
T ss_dssp             ECCEEEEEECCTT-SEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCC
T ss_pred             cCCeEEEEEECCC-CEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccCccCCc
Confidence            3456666666776 5999999866    337999999999 7999999999999999999988777666543 2345566


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC--CCcccc-ccccchh
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP--ASDDVI-SHGVTGL  151 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~--~~~~~~-~~~~~a~  151 (244)
                      .+++|++............+++|..++.|++++++.+  .++++. ++++.|+
T Consensus       116 ~~~~fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~i~~G~I~d~~ti~al  168 (202)
T d1mqea_         116 SVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIVNSIAIAGV  168 (202)
T ss_dssp             CEEEEEEEEEEECCC----------CEEEEEHHHHHHHHTTTSCCCHHHHHHH
T ss_pred             EEEEEEEEeccccCCCCCCCccceEEEEEEEHHHHHHHHHcCCCCcHHHHHHH
Confidence            7788877765543322233345566899999999988  456666 6665554

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-18  Score=134.14  Aligned_cols=100  Identities=21%  Similarity=0.318  Sum_probs=67.7

Q ss_pred             EEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee--eeCeE-EEEEE
Q 026059           33 GAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK--IFGQQ-RVRLY  106 (244)
Q Consensus        33 ~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~--~~~~~-~~~~~  106 (244)
                      .++|.++  ++|||++|.+   .|.|.+|||++|.|||+.+||+||++||||+++..+..+..+...  ..... .+++|
T Consensus         9 ~v~i~~~--~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (156)
T d1irya_           9 LVLVLQP--QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVF   86 (156)
T ss_dssp             EECEECS--SEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTCSCEEEEEEE
T ss_pred             EEEEEEC--CEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEEEcCCCCEEEEEEEE
Confidence            3444444  3999999876   589999999999999999999999999999998865544432222  12222 23333


Q ss_pred             EEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+....+    .+. ..+..++.|+++++++..
T Consensus        87 ~~~~~~~----~~~-~~ee~~~~W~~~~~l~~~  114 (156)
T d1irya_          87 CTDSIQG----TPV-ESDEMRPCWFQLDQIPFK  114 (156)
T ss_dssp             CCCCBCS----CCC-CCSSEEEEEEETTCCCST
T ss_pred             EEEeecC----ccc-CCchhheEEeEHHHCCcC
Confidence            2222222    233 234467899999999874

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-17  Score=129.55  Aligned_cols=130  Identities=18%  Similarity=0.306  Sum_probs=86.8

Q ss_pred             ccEEEEEEEe--------CCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee---eee
Q 026059           29 VPVTGAIILD--------ETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF---IEK   96 (244)
Q Consensus        29 v~vv~~ii~~--------~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~---~~~   96 (244)
                      +.++|+|++.        .+..++||+++.. .+.|.+|||+++.|||+.+||.||++||||+.+..+..+..+   ...
T Consensus         8 ~~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~   87 (153)
T d1xsba_           8 LRACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNY   87 (153)
T ss_dssp             EEEEEEEEEEECSSCSSSSTTEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEEEEE
T ss_pred             hheeEEEEEeccccccccCCCCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceeeecc
Confidence            4567888874        2335999999877 678999999999999999999999999999998864433321   111


Q ss_pred             e--eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcC
Q 026059           97 I--FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK  171 (244)
Q Consensus        97 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~  171 (244)
                      .  .......+|.+.......  ....++|+.+++|++++++.+...           +-.....+..+.++|..+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~e~~~~~~-----------~~~~~~iL~~~~~~L~~~~  151 (153)
T d1xsba_          88 VARNKPKTVIYWLAEVKDYDV--EIRLSHEHQAYRWLGLEEACQLAQ-----------FKEMKAALQEGHQFLCSIE  151 (153)
T ss_dssp             ESSSCEEEEEEEEEEESCTTC--CCCCCTTEEEEEEECHHHHHHHTC-----------SHHHHHHHHHHHHHHTTSS
T ss_pred             cccCceeEEEEEEEEEeeccc--ccCCCcceeEEEEEEHHHHHHhcC-----------CHHHHHHHHHHHHHHhccc
Confidence            1  222334444443333222  233457899999999999987321           1122345667777776543

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.74  E-value=6.9e-18  Score=137.81  Aligned_cols=122  Identities=18%  Similarity=0.345  Sum_probs=83.4

Q ss_pred             chHHHHHHhh-----cCcccccEEEEEEE--eCCCC--EEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcC
Q 026059           14 HIDDIFKDFT-----SYKVRVPVTGAIIL--DETYE--RCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETG   81 (244)
Q Consensus        14 ~~~~~~~~~~-----~y~~~v~vv~~ii~--~~~~~--kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtG   81 (244)
                      ...+.+..+.     .|.+...+|.+||+  +.+++  +|||++|..   .|.|.+|||+|+.|||+.+||.||++||||
T Consensus        17 ~~~~~~~~~~~~~~~~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtG   96 (202)
T d2fmla2          17 SLAEFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETG   96 (202)
T ss_dssp             CHHHHHHHHTTSCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHhcCcccCCCCCCCccEEEEEEEEEecCCCeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcC
Confidence            3344555554     36655555555543  43322  799999977   589999999999999999999999999999


Q ss_pred             CCCCc--ccccceeeeee--eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           82 FDVSK--LLNKDEFIEKI--FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        82 l~v~~--l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      +.+..  +..+..+....  ...+.+.++++....+.   .....+|+.++.|+++++++.
T Consensus        97 l~~~~~~l~~~~~~~~~~r~~~~~~i~~~~~~~~~~~---~~~~~~e~~~~~Wf~ld~l~~  154 (202)
T d2fmla2          97 VVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEE---PLIAGDDAKEVHWFNLERHGQ  154 (202)
T ss_dssp             CCCCGGGEEEEEEECCTTSSTTSSEEEEEEEEECCCC---CCCCCTTEEEEEEEEEEEETT
T ss_pred             eeeecceeeeeeecccCCccccceEEEEEEEEEeCCC---CcCCCcceeeEEEEeHHHCcc
Confidence            98764  33443332221  12344555555554443   234468899999999999987

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.74  E-value=8.4e-19  Score=135.71  Aligned_cols=54  Identities=28%  Similarity=0.468  Sum_probs=47.1

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCc
Q 026059           31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK   86 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~   86 (244)
                      ++++||.+++  +|||++|...|.|.+|||++|.||++.+||+||++||||+++..
T Consensus         3 ~a~~vi~~d~--kvLl~~r~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~   56 (152)
T d1k2ea_           3 VTSGVLVENG--KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEP   56 (152)
T ss_dssp             EEEEECEETT--EEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEE
T ss_pred             EEEEEEEECC--EEEEEEEcCCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceee
Confidence            3455666653  99999998789999999999999999999999999999998764

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.3e-18  Score=131.44  Aligned_cols=104  Identities=20%  Similarity=0.283  Sum_probs=70.0

Q ss_pred             EEEEEEeC-CCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeC-eEEEEEEEE
Q 026059           32 TGAIILDE-TYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFG-QQRVRLYII  108 (244)
Q Consensus        32 v~~ii~~~-~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~-~~~~~~~~~  108 (244)
                      +++|+++. +.+.+||+++.+ ++.|.+|||++++|||+.+||+||++||||+.+........+...... ...+..+.+
T Consensus        14 a~~vv~~~~~~~~~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (135)
T d2fvva1          14 AACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIV   93 (135)
T ss_dssp             EEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             EEEEEEEecCCCEEEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCccEEEEEEEE
Confidence            45566543 334677777666 789999999999999999999999999999988754444333322222 222333333


Q ss_pred             EeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059          109 AGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ......   .+...+|+.++.|++++++.+
T Consensus        94 ~~~~~~---~~~~~~e~~~~~W~~~~e~~~  120 (135)
T d2fvva1          94 TEVLED---WEDSVNIGRKREWFKIEDAIK  120 (135)
T ss_dssp             EEECSS---CHHHHHHCCCEEEEEHHHHHH
T ss_pred             EeecCC---CCCCCCceeEEEEEEHHHHHH
Confidence            333322   122356788999999999976

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=5.7e-18  Score=138.93  Aligned_cols=129  Identities=13%  Similarity=0.073  Sum_probs=94.1

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeCC---------CcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-e
Q 026059           27 VRVPVTGAIILDETYERCILVKGWKG---------SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-K   96 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~~---------~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~   96 (244)
                      .+-++|++++++.+.++++|+++.+.         ..|++|+|.+|+||++++||+||+.||||+.+..+..+..++. +
T Consensus        55 ~~~~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~sp  134 (209)
T d1g0sa_          55 ERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASP  134 (209)
T ss_dssp             ECCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCT
T ss_pred             ecCCEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccccccCC
Confidence            34567788888776679999999871         2689999999999999999999999999999998887776543 4


Q ss_pred             eeCeEEEEEEEEEeecCCCC--cCCCCCCceeeEEEEccccccC--CCcccc-ccccchhhhhh
Q 026059           97 IFGQQRVRLYIIAGVRDDTA--FAPQTKKEISEIAWQRLDELQP--ASDDVI-SHGVTGLKLYM  155 (244)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~--~~~~~~-~~~~~a~~~~~  155 (244)
                      +.....+++|.+........  ....+++|..++.|++++++.+  .++++. +++++|+.++.
T Consensus       135 g~~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~~g~I~da~ti~al~~~~  198 (209)
T d1g0sa_         135 GGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQ  198 (209)
T ss_dssp             TTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTSSCBHHHHHHHHHHH
T ss_pred             cccCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            45677888887764322211  1112346777899999999987  356665 77777765443

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.72  E-value=9.1e-18  Score=129.57  Aligned_cols=110  Identities=19%  Similarity=0.225  Sum_probs=72.7

Q ss_pred             hcCcccccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee--e-ee-
Q 026059           23 TSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--K-IF-   98 (244)
Q Consensus        23 ~~y~~~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~--~-~~-   98 (244)
                      ..|..+..+ ++||.++++..+|++++ ..|.|.||||++|.|||+.+||+||++||||+++.....+..+..  . .. 
T Consensus        12 ~~y~~r~~~-~~vi~~~~~~~lll~~~-~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   89 (147)
T d2azwa1          12 LTYQTRYAA-YIIVSKPENNTMVLVQA-PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHR   89 (147)
T ss_dssp             SCCEECCEE-EEECEEGGGTEEEEEEC-TTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTT
T ss_pred             cccCCCCeE-EEEEEECCCCEEEEEEc-CCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeeccC
Confidence            456666555 55666666546666554 578999999999999999999999999999998775433322211  1 11 


Q ss_pred             C---eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           99 G---QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        99 ~---~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .   .....+|.+......    +...+|+.++.|++++++.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~W~~~~e~~~  128 (147)
T d2azwa1          90 QTAYYNPGYFYVANTWRQL----SEPLERTNTLHWVAPEEAVR  128 (147)
T ss_dssp             TEEEEEEEEEEEEEEEEEC----SSCC-CCSEEEEECHHHHHH
T ss_pred             CceEEEEEEEEEEEecccc----CCCCccceEEEEEEHHHHHH
Confidence            1   122334444433332    33356788999999999876

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.1e-17  Score=129.21  Aligned_cols=103  Identities=10%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCCccccc---ceeeeee----
Q 026059           31 VTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSKLLNK---DEFIEKI----   97 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~---~~~~~~~----   97 (244)
                      +++++|+|+++ ++||+||..     +|.|.+ |||+++.|||+.+||+||+.||||+.+..+..+   ..|....    
T Consensus         4 a~~v~i~n~~g-~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~~~   82 (153)
T d1hzta_           4 AFSSWLFNAKG-QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI   82 (153)
T ss_dssp             CEEEEEECTTC-CEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred             EEEEEEEECCC-EEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceeccccccccccccc
Confidence            56788889885 999999864     688987 999999999999999999999999988753322   1121111    


Q ss_pred             eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           98 FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      .....+.+|.+. ..+.  ..+ +++|+.+++|+++++|.+
T Consensus        83 ~~~~~~~~~~~~-~~~~--~~~-~~~Ev~~~~W~~~~el~~  119 (153)
T d1hzta_          83 VENEVCPVFAAR-TTSA--LQI-NDDEVMDYQWCDLADVLH  119 (153)
T ss_dssp             EEEEECCEEEEE-BCSC--CCC-CTTTEEEEEEECHHHHHH
T ss_pred             cceeEEEEEEEe-eCCC--ccC-ChhheeEEEEeeHHHHHH
Confidence            111222334332 2322  222 357999999999999976

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.70  E-value=2.6e-17  Score=132.81  Aligned_cols=108  Identities=19%  Similarity=0.157  Sum_probs=74.3

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEEE
Q 026059           31 VTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVR  104 (244)
Q Consensus        31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~~  104 (244)
                      +|.+++.+++..+|||++|..     +|.|+||||++|.||++.+||+||++||||+....+..++.... .......++
T Consensus        34 aVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~~~~~~V~  113 (187)
T d1nqza_          34 AVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVT  113 (187)
T ss_dssp             EEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEEEE
T ss_pred             EEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceeeccccEEE
Confidence            444555554445899999986     79999999999999999999999999999999886555443211 112233444


Q ss_pred             EEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          105 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .|.+...... ......++|+.++.|+++++|...
T Consensus       114 p~v~~l~~~~-~~~~~~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_         114 PVLGRIAPEA-LDTLRVTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             EEEEEECGGG-GGGCCCCTTEEEEECCBHHHHHHS
T ss_pred             EEEEEECCcc-ccccccCCcceEEEeccHHHHhcC
Confidence            4544322221 112234679999999999999763

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.70  E-value=1.9e-17  Score=130.37  Aligned_cols=106  Identities=15%  Similarity=0.108  Sum_probs=74.7

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee---ee
Q 026059           28 RVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK---IF   98 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~---~~   98 (244)
                      .+.+++++|++.++ ++||.+|..     +|.|++| ||+++.|||+.+||+||++||||+++........+...   ..
T Consensus        27 ~~~~v~~~v~~~~g-~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~  105 (162)
T d2o5fa1          27 RVRVVNAFLRNSQG-QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTT  105 (162)
T ss_dssp             GSEEEEEEEECTTS-CEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSS
T ss_pred             eEEEEEEEEEcCCC-CEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEEecccccc
Confidence            44578888998885 899988754     6999887 99999999999999999999999998754332222111   11


Q ss_pred             CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059           99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                      ....+.+|.+.. ...  . ..+++|+.++.|++++++.+
T Consensus       106 ~~~~~~~~~~~~-~~~--~-~~~~~Ev~~~~W~~~eel~~  141 (162)
T d2o5fa1         106 LSSFMCVYELRS-DAT--P-IFNPNDISGGEWLTPEHLLA  141 (162)
T ss_dssp             CSSEEEEEEEEC-SSC--C-CCCTTTCSEEEEECHHHHHH
T ss_pred             ceEEEEEEEEec-CCC--c-cCChhHeeEEEEeeHHHHHH
Confidence            223445554433 222  2 23467899999999999976

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=2.6e-16  Score=127.02  Aligned_cols=124  Identities=15%  Similarity=0.197  Sum_probs=87.4

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----------CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceee-ee
Q 026059           28 RVPVTGAIILDETYERCILVKGWK----------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI-EK   96 (244)
Q Consensus        28 ~v~vv~~ii~~~~~~kvLLvkr~~----------~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~-~~   96 (244)
                      +.++|+++.++.+.+++||+++.+          .-.|++|||.+| ||++++||+||+.||||+.+..+..+..++ .+
T Consensus        42 ~~~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~~~sp  120 (189)
T d1viua_          42 RGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSP  120 (189)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEEESCT
T ss_pred             cCCEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcceeecCc
Confidence            456778888876657999999875          236788999888 667899999999999999999888877643 34


Q ss_pred             eeCeEEEEEEEEEeecCCCC-cCCCCCCceeeEEEEccccccCC--Ccccc-ccccchhh
Q 026059           97 IFGQQRVRLYIIAGVRDDTA-FAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLK  152 (244)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~--~~~~~-~~~~~a~~  152 (244)
                      +..+..+++|++........ ....+++|..++.|++++++.++  ++++. +.+++|++
T Consensus       121 G~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i~~g~i~da~ti~al~  180 (189)
T d1viua_         121 GGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLN  180 (189)
T ss_dssp             TTBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHHHHTSCCBHHHHHHHH
T ss_pred             cccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHHHcCCCCcHHHHHHHH
Confidence            56678888888765433211 12223567889999999999883  45554 55555544

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.63  E-value=1e-15  Score=115.57  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=70.5

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeE
Q 026059           27 VRVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQ  101 (244)
Q Consensus        27 ~~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~  101 (244)
                      ++++++++||.+++ +++||.||..    +|.|+||||.++.+|+ .+++.||++||+|+++.....+..+.+. .+...
T Consensus         2 k~v~v~~~vi~~~~-g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh~~~   79 (127)
T d1rrqa2           2 KQVPLAVAVLADDE-GRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVW   79 (127)
T ss_dssp             EEEEEEEEEEEESS-SEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEEEECSSEEE
T ss_pred             CEEEEEEEEEEECC-CEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccceEecCCeEE
Confidence            35677788888877 4999999876    6899999999998777 7899999999999988755444433221 12234


Q ss_pred             EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059          102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .+++|.+....+.        .+..+++|+++++|..+
T Consensus        80 ~~~~~~~~~~~~~--------~~~~~~~Wv~~~el~~~  109 (127)
T d1rrqa2          80 QLTVFPGRLVHGG--------PVEEPYRLAPEDELKAY  109 (127)
T ss_dssp             EEEEEEEEEECCS--------CCCTTEEEEEGGGGGGS
T ss_pred             EEEEEEEEECCCC--------ccccceEEeeHHHHhHC
Confidence            4566666554332        23356889999999874

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.1e-13  Score=114.18  Aligned_cols=97  Identities=13%  Similarity=0.182  Sum_probs=66.2

Q ss_pred             EEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccc--------------c---eeeeee------eC
Q 026059           43 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK--------------D---EFIEKI------FG   99 (244)
Q Consensus        43 kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~--------------~---~~~~~~------~~   99 (244)
                      ++||++|...+.|.||||+||+||++.+||+||+.||||+.+..+...              .   .+..+.      ..
T Consensus       140 qvLlIkR~d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddprntd~  219 (292)
T d1q33a_         140 QFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDN  219 (292)
T ss_dssp             EEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSS
T ss_pred             EEEEEEecCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccccCCCCC
Confidence            699999988999999999999999999999999999999987642111              0   011100      11


Q ss_pred             eEEE-EEEEEEeecCC--CCcCCCCCCceeeEEEEccccccCC
Q 026059          100 QQRV-RLYIIAGVRDD--TAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus       100 ~~~~-~~~~~~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      .... .+|.+....+.  ........+|..+++|++++++..+
T Consensus       220 aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~L  262 (292)
T d1q33a_         220 AWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKL  262 (292)
T ss_dssp             EEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCC
T ss_pred             CEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhccccc
Confidence            1222 33444433322  1223345688999999999998774

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.40  E-value=1.3e-12  Score=105.33  Aligned_cols=95  Identities=17%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             EEEEEEeeCCCcEEeCeeecCCCCC-HHHHHHHHHHhhcCCCCCcccc--cceeeeee--eCeEEEEEEEEEeecCCC--
Q 026059           43 RCILVKGWKGSSWSFPRGKKNKDEE-DHACAIREVQEETGFDVSKLLN--KDEFIEKI--FGQQRVRLYIIAGVRDDT--  115 (244)
Q Consensus        43 kvLLvkr~~~~~w~~PgG~ve~gEs-~~eaa~REl~EEtGl~v~~l~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~--  115 (244)
                      .+|+++| ..|.|.||||++|.||+ +++||.||+.||||+.+..+..  ...+....  .....+..|++.......  
T Consensus        44 ~vl~~~r-~~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l~~~~~~~~~~~~~~~~~v~~fy~~~~~~~~l~  122 (196)
T d1u20a1          44 VLLMMMR-FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIE  122 (196)
T ss_dssp             EEEEEEE-TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTTSCEEEEEEEEECCHHHHH
T ss_pred             EEEEEEe-cCCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEEEeeEEEEeccCCCCCEEEEEEEEEEcchHHhh
Confidence            4566555 47899999999999996 7899999999999998875432  22222211  122344444444432110  


Q ss_pred             ------CcCCCCCCceeeEEEEccccccC
Q 026059          116 ------AFAPQTKKEISEIAWQRLDELQP  138 (244)
Q Consensus       116 ------~~~~~~~~E~~~~~W~~~~el~~  138 (244)
                            ......+.|+.++.|+++.++.+
T Consensus       123 ~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1         123 RIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             HHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             hhhhcccccCcCCccccceeEEeHHHhcc
Confidence                  01112246889999999999866

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.3e-11  Score=91.01  Aligned_cols=107  Identities=14%  Similarity=0.151  Sum_probs=69.1

Q ss_pred             cccEEEEEEEeC--CCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC--cccccceeee-eee
Q 026059           28 RVPVTGAIILDE--TYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIE-KIF   98 (244)
Q Consensus        28 ~v~vv~~ii~~~--~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~--~l~~~~~~~~-~~~   98 (244)
                      ....+.+|+.+.  .+++|||.||..    +|+|+||+|.++.||+..++|.||..+|.+..+.  ....+..+.+ ..+
T Consensus        11 ~~~~~~~vv~~~~~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH   90 (142)
T d1x51a1          11 EESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSH   90 (142)
T ss_dssp             EEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSS
T ss_pred             EEEEEEEEEEecCCCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccCC
Confidence            334445555553  135999999976    7999999999999999988887776555554333  3333333222 223


Q ss_pred             CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059           99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  139 (244)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  139 (244)
                      ....+++|.+....+.    + ...+..+..|++++++..+
T Consensus        91 ~~~~~~v~~~~~~~~~----~-~~~~~~~~~W~~~~el~~~  126 (142)
T d1x51a1          91 IKLTYQVYGLALEGQT----P-VTTVPPGARWLTQEEFHTA  126 (142)
T ss_dssp             CEEEEEEEEEECSSCC----C-CCCCCTTEEEEEHHHHHHS
T ss_pred             cceEEEEEEEEEeCCC----c-ccccCccCEEeeHHHcccc
Confidence            3455677776554332    1 2356678999999999763