Citrus Sinensis ID: 026077

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFADMWKE
Secondary Structure (PSIPRED)
ccccHHcccccccccccccccccHHHHHHHHHHccccEEEEEEEEcccccEEEEcccccccEEEEEEEcEEEEcccccccccccccccEEEEcccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccEEEEEEEEcccccccccccccccccccEEEEEEccEEEEEEEEEccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccccccccHHHHHHHHHHHHccccEEEEEEcccccEEEEEEcccccccEEEEEEEcccHHHHccccccccccccEEEccccccccHHHHHHHHHHHHHHccccccccccccEcEEEEEEEEccEEEEEEEEEEEccccccccccccccccEEEEEcccEEEEEEEEEcccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcc
Coil and Loop (DISEMBL)
mlnvvsllphckkdnkveaksskgaTLNELVELkscssclffecrkHKDLYLWmakspngpsvKFLVNAVHTMEELKLTGnhlkasrplltfssnfgkDAHWKLIKEMIIQIfgtpkehrkskpyhdhvfVFSIVddhiwfrnyqitvphnesdkvarggldkmtlvevgprfclnpikifggsfggptlyenpfyvspnqIRALEKKNKAGKYAKKVKAKTRRKMhelsnplepdefaDMWKE
Flexible Loop (DISEMBL)
mlnvvsllphckkdnkveaksskgatLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQItvphnesdkvargGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRAlekknkagkyakkvkaktrrkmhelsnplepdefadmwke
Low Complexity Region (SEG)
MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEkknkagkyakkvkakTRRKMHELSNPLEPDEFADMWKE
Disordered region (IsUnstruct)
**************************LNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQI******************************************
Disordered Region (DISOPRED)
MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEEL***********PLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVP***************TLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVS***************************************FADMWK*
Disordered Region (DISEMBL)
MLNVVSLLPHCKKD********KGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNK****************HELSNPLEPDEFADMWKE
Disordered Region (DISPRO)
*L**VSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNES******GLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRR*******P*EPDEFA**WKE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFADMWKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q3SZZ0	353	Ribosome biogenesis prote	yes	no	0.934	0.645	0.487	9e-61
Q8TDN6	353	Ribosome biogenesis prote	yes	no	0.934	0.645	0.487	1e-60
Q5RAN2	353	Ribosome biogenesis prote	yes	no	0.934	0.645	0.483	3e-60
Q9DCA5	353	Ribosome biogenesis prote	yes	no	0.934	0.645	0.483	4e-60
Q4QQT6	352	Ribosome biogenesis prote	yes	no	0.864	0.599	0.506	5e-60
Q8UVY2	339	Ribosome biogenesis prote	N/A	no	0.913	0.657	0.464	5e-60
Q08235	291	Ribosome biogenesis prote	yes	no	0.963	0.807	0.464	5e-59
Q9HGL6	295	Ribosome biogenesis prote	yes	no	0.950	0.786	0.425	3e-55
Q54JN0	326	Ribosome biogenesis prote	yes	no	0.930	0.696	0.451	5e-55
Q9VZE6	359	Ribosome biogenesis prote	yes	no	0.885	0.601	0.434	6e-53

>sp|Q3SZZ0|BRX1_BOVIN Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1

 Score =  233 bits (594), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 119/244 (48%), Positives = 162/244 (66%), Gaps = 16/244 (6%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           M ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct: 78  MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF TP+ H 
Sbjct: 137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHP 196

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKI
Sbjct: 197 KSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKI 243

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMH--ELSNPLEPDEF 238
           F GSFGGPTLYENP Y SPN  R + +   A KY +K + K  +K+   E    L  D  
Sbjct: 244 FQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQVKDVQKLRKKEPKTILPHDPT 303

Query: 239 ADMW 242
           AD++
Sbjct: 304 ADVF 307

Required for biogenesis of the 60S ribosomal subunit.
Bos taurus (taxid: 9913)

>sp|Q8TDN6|BRX1_HUMAN Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2

 Score =  233 bits (593), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/244 (48%), Positives = 162/244 (66%), Gaps = 16/244 (6%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           M ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct: 78  MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF TP+ H 
Sbjct: 137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHP 196

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKI
Sbjct: 197 KSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKI 243

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMH--ELSNPLEPDEF 238
           F GSFGGPTLYENP Y SPN  R + +   A KY +K + K  +K+   E    L  D  
Sbjct: 244 FQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQVKDVQKLRKKEPKTLLPHDPT 303

Query: 239 ADMW 242
           AD++
Sbjct: 304 ADVF 307

Required for biogenesis of the 60S ribosomal subunit.

Homo sapiens (taxid: 9606)

>sp|Q5RAN2|BRX1_PONAB Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/244 (48%), Positives = 161/244 (65%), Gaps = 16/244 (6%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           M ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct: 78  MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQI  TP+ H 
Sbjct: 137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQILSTPRYHP 196

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKI
Sbjct: 197 KSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKI 243

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMH--ELSNPLEPDEF 238
           F GSFGGPTLYENP Y SPN  R + +   A KY +K + K  +K+   E    L  D  
Sbjct: 244 FQGSFGGPTLYENPHYQSPNMHRRVTRSITAAKYREKQQVKDVQKLRKKEPKTLLPHDPT 303

Query: 239 ADMW 242
           AD++
Sbjct: 304 ADVF 307

Required for biogenesis of the 60S ribosomal subunit.

Pongo abelii (taxid: 9601)

>sp|Q9DCA5|BRX1_MOUSE Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=2 SV=3

 Score =  231 bits (588), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/244 (48%), Positives = 160/244 (65%), Gaps = 16/244 (6%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           M ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct: 78  MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PS KFLV  +HT+ ELK+TGN LK SRPLL+F   F    H+ L+KE +IQIF TP+ H 
Sbjct: 137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHP 196

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKI
Sbjct: 197 KSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKI 243

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMH--ELSNPLEPDEF 238
           F GSFGGPTLYENP Y SPN  R + +   A KY ++ + K  +K+   E    L  D  
Sbjct: 244 FQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRERQQVKDVQKLRKKEPKTILPHDPT 303

Query: 239 ADMW 242
           AD++
Sbjct: 304 ADVF 307

Required for biogenesis of the 60S ribosomal subunit.

Mus musculus (taxid: 10090)

>sp|Q4QQT6|BRX1_RAT Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1

 Score =  231 bits (588), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 152/225 (67%), Gaps = 14/225 (6%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           M ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct: 77  MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 135

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PS KFLV  +HT+ ELK+TGN LK SRPLL+F   F    H+ L+KE +IQIF TP+ H 
Sbjct: 136 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHP 195

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKI
Sbjct: 196 KSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKI 242

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRK 225
           F GSFGGPTLYENP Y SPN  R + +   A KY +K + K  +K
Sbjct: 243 FQGSFGGPTLYENPHYQSPNMHRRVVRSITAAKYREKQQVKDVQK 287

Required for biogenesis of the 60S ribosomal subunit.

Rattus norvegicus (taxid: 10116)

>sp|Q8UVY2|BRX1_XENLA Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1

 Score =  231 bits (588), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 18/241 (7%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           M ++ SL+PH + + K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP G
Sbjct: 71  MQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEG 129

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PS KFLV  +HT+ ELK++GN LK SRP+L+F   F ++  + L+KE++ QIFGTP+ H 
Sbjct: 130 PSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHP 189

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           +S+P+ DH+F FSI D+ IWFRNYQI     E D           LVE+GPRF LN IKI
Sbjct: 190 RSQPFVDHIFTFSIADNRIWFRNYQII----EED---------AALVEIGPRFVLNLIKI 236

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSN----PLEPD 236
           F GSFGGPTLYENP Y SPN  R + +   A K  +K + K  +K+ +  +    P++P 
Sbjct: 237 FKGSFGGPTLYENPHYQSPNMHRRMIRLATAAKVKEKQQVKEVQKLKKEEDRPVIPVDPT 296

Query: 237 E 237
           E
Sbjct: 297 E 297

Required for biogenesis of the 60S ribosomal subunit.

Xenopus laevis (taxid: 8355)

>sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2

 Score =  227 bits (579), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 111/239 (46%), Positives = 155/239 (64%), Gaps = 4/239 (1%)

Query: 3   NVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPS 62
           ++  LLPH +K+ K++ K      LNE+ EL +C++ LFFE RKH+DLYLW++K PNGP+
Sbjct: 51  DLSGLLPHSRKEPKLDTKKDL-QQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPT 109

Query: 63  VKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKS 122
           +KF +  +HTM+EL  TGN LK SRP+L+F   F    H++LIKE+++  FG P   RKS
Sbjct: 110 IKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFESSPHYQLIKELLVHNFGVPPNARKS 169

Query: 123 KPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVA-RGGLDKMTLVEVGPRFCLNPIKIF 181
           KP+ DHV  FSIVDD IW R Y+I+  H+  +K     G + ++LVE+GPRF +  I I 
Sbjct: 170 KPFIDHVMSFSIVDDKIWVRTYEIS--HSTKNKEEYEDGEEDISLVEIGPRFVMTVILIL 227

Query: 182 GGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
            GSFGGP +YEN  YVSPN +RA  K+  A +   + +A   RK+    N L  D  ++
Sbjct: 228 EGSFGGPKIYENKQYVSPNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSN 286

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1

 Score =  215 bits (547), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 102/240 (42%), Positives = 154/240 (64%), Gaps = 8/240 (3%)

Query: 3   NVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPS 62
           ++VS++PH KKD+K+++K  +   LNEL EL +C++  FFE R+ +DLYL +A++PNGP+
Sbjct: 63  DLVSMMPHSKKDSKLDSKD-RLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPT 121

Query: 63  VKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKS 122
           VKF V  +HTM+EL +TGN LK SRP+L+F   F    H K++KE++ Q FG PK  R+S
Sbjct: 122 VKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRS 181

Query: 123 KPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFG 182
           KP+ D V   +I D  IWFRNY+I    ++S        D +TL+E+GPRF +  I I  
Sbjct: 182 KPFIDRVCTLTIADGKIWFRNYEIRENEDKSK-------DPVTLIEIGPRFVMTIINILE 234

Query: 183 GSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFADMW 242
           GSFGGP +Y+N  +VS   +RA  +   A +Y  + ++K  R++    N +  D   +++
Sbjct: 235 GSFGGPVIYKNDTFVSSTMVRAAIRNQAAQRYVNRQESKLERQVRAQQNVIPEDPLDNVF 294

Required for biogenesis of the 60S ribosomal subunit.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54JN0|BRX1_DICDI Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium discoideum GN=bxdc2 PE=3 SV=1

 Score =  214 bits (545), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 10/237 (4%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           M +++SL+PH KK++K++ + +  + +NE  E+KSC+  + F+ RK  D +LWMAK+P G
Sbjct: 93  MADLISLIPHSKKEDKIDDRKTL-SLINETCEMKSCNYAILFDVRKGTDCFLWMAKTPLG 151

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           P+VKF +  VHT++EL++TGN LK SRP L F  +F  + H +LIKE+I QI+ TPK H 
Sbjct: 152 PTVKFHITNVHTLDELQMTGNCLKGSRPFLHFDKSFDSEVHLQLIKELITQIYSTPKGHV 211

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KSKP+ DHVF F   D  IWFRNYQI+    + D +         L E+GPR  ++  KI
Sbjct: 212 KSKPFFDHVFSFFYQDGRIWFRNYQISDQEFKKDSL---------LTEIGPRMIMHIDKI 262

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDE 237
           F   FGG  LY NP YVSPN  R+  K +KA KY K+   K + +  +  + +EP E
Sbjct: 263 FSDGFGGSVLYSNPNYVSPNNTRSDHKLSKANKYIKRKYQKGKAEERQKISFIEPSE 319

Required for biogenesis of the 60S ribosomal subunit.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VZE6|BRX1_DROME Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster GN=CG11583 PE=2 SV=2

 Score =  207 bits (527), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 151/235 (64%), Gaps = 19/235 (8%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSP-- 58
           M ++ +L+PH + ++K+E +S   + +NE+ E+K C+  + FE R+ +DLY+W++ +   
Sbjct: 68  MKDIKTLMPHHRPESKME-RSKTLSVVNEMCEMKHCNKAMLFEGRRKRDLYMWISNTSGS 126

Query: 59  NGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKE 118
            GPS KFL+  +HTM ELK+TGN L+ SRPLL+F S F +  H KL+KE+ +Q +  P  
Sbjct: 127 TGPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDSKFDELPHLKLLKELFVQTYSVPNH 186

Query: 119 HRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPI 178
           H KS+P+ DHVF F+ +D  IWFRN+QI            GGL      EVGPR+ +NP+
Sbjct: 187 HPKSQPFVDHVFTFTYLDKRIWFRNFQIL--------SEDGGLS-----EVGPRYVMNPV 233

Query: 179 KIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPL 233
           KIF GSF G T++ENP YVSP++ R + KK    KY  +V+ K +   HE + P+
Sbjct: 234 KIFDGSFTGKTIWENPDYVSPSKQRQVLKKAAKDKYVNRVEQKVK---HEATRPI 285

Required for biogenesis of the 60S ribosomal subunit.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
449526668	252	PREDICTED: ribosome biogenesis protein B	1.0	0.968	0.926	1e-132
255577729	312	ribosome biogenesis protein brix, putati	1.0	0.782	0.897	1e-130
224117214	317	predicted protein [Populus trichocarpa]	1.0	0.769	0.901	1e-130
388508922	320	unknown [Lotus japonicus]	1.0	0.762	0.893	1e-129
224128370	317	predicted protein [Populus trichocarpa]	1.0	0.769	0.901	1e-129
297834412	315	brix domain-containing protein [Arabidop	1.0	0.774	0.889	1e-129
18400776	315	ribosomal RNA processing brix domain-con	1.0	0.774	0.881	1e-128
16648689	315	AT3g15460/MJK13_12 [Arabidopsis thaliana	1.0	0.774	0.877	1e-128
357506041	315	Ribosome biogenesis protein BRX1-like pr	1.0	0.774	0.872	1e-127
225437949	316	PREDICTED: ribosome biogenesis protein B	1.0	0.772	0.872	1e-127

>gi|449526668|ref|XP_004170335.1| PREDICTED: ribosome biogenesis protein BRX1 homolog, partial [Cucumis sativus]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/244 (92%), Positives = 235/244 (96%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           MLN+VSLLPHCKKDNKVE++SSKGATLNELVELK CSS LFFECRKHKDLYLWMAK P+G
Sbjct: 8   MLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHKDLYLWMAKCPSG 67

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PSVKFLVNAVHTMEELKLTGNHLK SRP+LTFSSNF KD HWKL+KEMIIQIFGTPKEHR
Sbjct: 68  PSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHR 127

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
            SKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDKVARGGLDKMTL+EVGPRFCLNPIKI
Sbjct: 128 HSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIEVGPRFCLNPIKI 187

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
           FGGSFGGPTLYENP YVSPNQIRALEKK KAGKY+KKVKAKTRRKMHELSNPLEPDEFAD
Sbjct: 188 FGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHELSNPLEPDEFAD 247

Query: 241 MWKE 244
           MWKE
Sbjct: 248 MWKE 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577729|ref|XP_002529740.1| ribosome biogenesis protein brix, putative [Ricinus communis] gi|223530781|gb|EEF32647.1| ribosome biogenesis protein brix, putative [Ricinus communis]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/244 (89%), Positives = 232/244 (95%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           MLN+VSLLPHCKKDNKVE+KSSKG  LNELVELK  SSCLFFECRKHKDLYLWMAK P G
Sbjct: 69  MLNIVSLLPHCKKDNKVESKSSKGMALNELVELKGSSSCLFFECRKHKDLYLWMAKCPGG 128

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PSVKFLVNAVHTMEELKLTGNHLK SRP+LTFS+NF KDAHWKL+KEM++QIFGTPKEHR
Sbjct: 129 PSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSANFDKDAHWKLLKEMLMQIFGTPKEHR 188

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDKV RGGLDKMTLVEVGPRFCLNPIKI
Sbjct: 189 KSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVVRGGLDKMTLVEVGPRFCLNPIKI 248

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
           FGGSFGGPTLYENPFY+SPNQIRALEK+ KAGK+ KKVKAKTRRKMHE+SNPL PDEFAD
Sbjct: 249 FGGSFGGPTLYENPFYISPNQIRALEKRKKAGKFEKKVKAKTRRKMHEMSNPLVPDEFAD 308

Query: 241 MWKE 244
           MW+E
Sbjct: 309 MWRE 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117214|ref|XP_002317510.1| predicted protein [Populus trichocarpa] gi|222860575|gb|EEE98122.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/244 (90%), Positives = 236/244 (96%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           MLN+VSLLPHCKKD+KVE+ SSKGATLNELVELK+CSS LFFECRKHKDLYLWM K P+G
Sbjct: 74  MLNLVSLLPHCKKDSKVESTSSKGATLNELVELKNCSSSLFFECRKHKDLYLWMVKCPSG 133

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PSVKFLVNAVHTMEELKLTGNHLK SRPLLTFS+NF KDAHWKL+KEMIIQIFG PK+HR
Sbjct: 134 PSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLKEMIIQIFGIPKDHR 193

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KSKP++DHVFVFSIVDDHIWFRNYQI+VPHNE+DK+ARGGLDKMTLVEVGPRFCLNPIKI
Sbjct: 194 KSKPFYDHVFVFSIVDDHIWFRNYQISVPHNETDKMARGGLDKMTLVEVGPRFCLNPIKI 253

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
           FGGSFGGPTLYENPF++SPNQIRALEKK KAGK+AKKVKAKTRRKMHELSNPLEPDEFAD
Sbjct: 254 FGGSFGGPTLYENPFFISPNQIRALEKKQKAGKFAKKVKAKTRRKMHELSNPLEPDEFAD 313

Query: 241 MWKE 244
           MWKE
Sbjct: 314 MWKE 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508922|gb|AFK42527.1| unknown [Lotus japonicus]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/244 (89%), Positives = 237/244 (97%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           MLNVVSLLPHCKKDNKVE+K +KGATLNELVELK+CSSCLFFECRK KDL+LWM+K PNG
Sbjct: 77  MLNVVSLLPHCKKDNKVESKETKGATLNELVELKNCSSCLFFECRKAKDLFLWMSKCPNG 136

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PSVKFLV+AVHTMEELKLTGNHLKASRPLLTFS+NF KDAHWKL+KEM++QIF TPK+HR
Sbjct: 137 PSVKFLVSAVHTMEELKLTGNHLKASRPLLTFSTNFEKDAHWKLLKEMLLQIFETPKDHR 196

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KSKP+HDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ RGGLDKMTLVEVGPRFCLNPIKI
Sbjct: 197 KSKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGGLDKMTLVEVGPRFCLNPIKI 256

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
           FGGSFGGPTLYENPFYVSPNQIRALEK+ KAGK+AKKVKAKTRRKMHE++NPLEPDEFAD
Sbjct: 257 FGGSFGGPTLYENPFYVSPNQIRALEKRKKAGKFAKKVKAKTRRKMHEMANPLEPDEFAD 316

Query: 241 MWKE 244
           MWK+
Sbjct: 317 MWKD 320

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128370|ref|XP_002329145.1| predicted protein [Populus trichocarpa] gi|222869814|gb|EEF06945.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/244 (90%), Positives = 236/244 (96%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           MLN+VSLLPHCKKD+KVE+ S+KGATLNELVELK+ SS LFFECRKHKDLYLWM K P+G
Sbjct: 74  MLNLVSLLPHCKKDSKVESTSTKGATLNELVELKNGSSSLFFECRKHKDLYLWMVKCPSG 133

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PSVKFLVNAVHTMEELKLTGNHLK SRPLLTFS+NF KDAHWKL+KEMIIQIFGTPK+HR
Sbjct: 134 PSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLKEMIIQIFGTPKDHR 193

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KSKP++DHVFVFSIVDDHIWFRNYQI+VPHNE+DK+ARGGLDKMTLVEVGPRFCLNPIKI
Sbjct: 194 KSKPFYDHVFVFSIVDDHIWFRNYQISVPHNETDKIARGGLDKMTLVEVGPRFCLNPIKI 253

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
           FGGSFGGPTLYENPF+VSPNQIRALEKK KAGK+AKKVKAKTRRKMHELSNPLEPDEFAD
Sbjct: 254 FGGSFGGPTLYENPFFVSPNQIRALEKKQKAGKFAKKVKAKTRRKMHELSNPLEPDEFAD 313

Query: 241 MWKE 244
           MWKE
Sbjct: 314 MWKE 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834412|ref|XP_002885088.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330928|gb|EFH61347.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/244 (88%), Positives = 232/244 (95%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           MLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKDLY+WM KSP G
Sbjct: 71  MLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDLYMWMVKSPGG 130

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PSVKFLVNAVHTMEELKLTGNHLK SRPLLTFSSNF KDAHWKL+KEM+ QIFG P+ HR
Sbjct: 131 PSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLKEMLTQIFGIPEGHR 190

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EVGPRFCLNPIKI
Sbjct: 191 KSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVGPRFCLNPIKI 250

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
           FGGSFGGPTLYENPFYVSPNQIRALEK+NKAGK+AKK+KAKTRRKMHELSNPLEP EF D
Sbjct: 251 FGGSFGGPTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHELSNPLEPGEFTD 310

Query: 241 MWKE 244
           MWK+
Sbjct: 311 MWKD 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400776|ref|NP_566514.1| ribosomal RNA processing brix domain-containing protein [Arabidopsis thaliana] gi|7021731|gb|AAF35412.1| unknown protein [Arabidopsis thaliana] gi|15795111|dbj|BAB02375.1| unnamed protein product [Arabidopsis thaliana] gi|21592419|gb|AAM64370.1| unknown [Arabidopsis thaliana] gi|332642158|gb|AEE75679.1| ribosomal RNA processing brix domain-containing protein [Arabidopsis thaliana]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/244 (88%), Positives = 230/244 (94%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           MLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKDLY+WM KSP G
Sbjct: 71  MLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDLYMWMVKSPGG 130

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PSVKFLVNAVHTMEELKLTGNHLK SRPLLTFSSNF  DAHWKL+KEM+ QIFG P+ HR
Sbjct: 131 PSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQIFGIPEGHR 190

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EVGPRFCLNPIKI
Sbjct: 191 KSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVGPRFCLNPIKI 250

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
           FGGSFGG TLYENPFYVSPNQIRALEK+NKAGK+AKK+KAKTRRKMHELSNPLEPDEF D
Sbjct: 251 FGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHELSNPLEPDEFTD 310

Query: 241 MWKE 244
           MW +
Sbjct: 311 MWND 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16648689|gb|AAL25537.1| AT3g15460/MJK13_12 [Arabidopsis thaliana] gi|23505881|gb|AAN28800.1| At3g15460/MJK13_12 [Arabidopsis thaliana]

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/244 (87%), Positives = 230/244 (94%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           MLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKDLY+WM KSP G
Sbjct: 71  MLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDLYMWMVKSPGG 130

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PSVKFLVNAVHTMEELK+TGNHLK SRPLLTFSSNF  DAHWKL+KEM+ QIFG P+ HR
Sbjct: 131 PSVKFLVNAVHTMEELKVTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQIFGIPEGHR 190

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           KSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EVGPRFCLNPIKI
Sbjct: 191 KSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVGPRFCLNPIKI 250

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
           FGGSFGG TLYENPFYVSPNQIRALEK+NKAGK+AKK+KAKTRRKMHELSNPLEPDEF D
Sbjct: 251 FGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHELSNPLEPDEFTD 310

Query: 241 MWKE 244
           MW +
Sbjct: 311 MWND 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506041|ref|XP_003623309.1| Ribosome biogenesis protein BRX1-like protein [Medicago truncatula] gi|355498324|gb|AES79527.1| Ribosome biogenesis protein BRX1-like protein [Medicago truncatula]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/244 (87%), Positives = 233/244 (95%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           MLN+VSLLPHCKKDNKVE+K +KGATLNELVELK+CSSCLFFECRK KDLYLWMAK PNG
Sbjct: 72  MLNLVSLLPHCKKDNKVESKETKGATLNELVELKNCSSCLFFECRKAKDLYLWMAKCPNG 131

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PSVKFLV+AVHTMEELKLTGNHLK SRPLLTFSSNF KDA+WKL+KEM++QIF TPK+HR
Sbjct: 132 PSVKFLVSAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAYWKLLKEMLLQIFETPKDHR 191

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           K+KP+HDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ RG LDKMTL+EVGPRFCLNPIKI
Sbjct: 192 KAKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGSLDKMTLIEVGPRFCLNPIKI 251

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
           FGGSFGGPTLYENP YVSPNQIRAL+KK KAG +AKKVKAKTRRKMHE++NPLEPDEFAD
Sbjct: 252 FGGSFGGPTLYENPLYVSPNQIRALQKKKKAGTFAKKVKAKTRRKMHEMANPLEPDEFAD 311

Query: 241 MWKE 244
           MWK+
Sbjct: 312 MWKD 315

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437949|ref|XP_002270029.1| PREDICTED: ribosome biogenesis protein BRX1 homolog [Vitis vinifera] gi|297744237|emb|CBI37207.3| unnamed protein product [Vitis vinifera]

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/244 (87%), Positives = 229/244 (93%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           ML++VSLLPH KKDNKVE+K SKGATLNELVELK+CSSCLFFECRK KDLYLWMAK PNG
Sbjct: 73  MLSIVSLLPHAKKDNKVESKESKGATLNELVELKNCSSCLFFECRKQKDLYLWMAKCPNG 132

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           PSVKF+V+AVHTMEELKLTGNHLK SRPLLTFS+NF KD HWKL+KEMI QIFGTPKEHR
Sbjct: 133 PSVKFMVDAVHTMEELKLTGNHLKGSRPLLTFSTNFDKDPHWKLLKEMITQIFGTPKEHR 192

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           K+KPYHDHVF FS+ DDHIWFRNYQI+VPHNESDKV RGGLDK+TLVEVGPRFCLNPIKI
Sbjct: 193 KAKPYHDHVFAFSLADDHIWFRNYQISVPHNESDKVDRGGLDKITLVEVGPRFCLNPIKI 252

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
           FGGSFGGPTLYENPFY+SPN+IRAL+K+  AGKYAKKVKAKTRRKMHEL NPLE DEFAD
Sbjct: 253 FGGSFGGPTLYENPFYISPNEIRALKKRKAAGKYAKKVKAKTRRKMHELENPLEADEFAD 312

Query: 241 MWKE 244
           MWKE
Sbjct: 313 MWKE 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2011486	320	AT1G52930 [Arabidopsis thalian	1.0	0.762	0.827	7.3e-114
TAIR|locus:2090131	315	AT3G15460 "AT3G15460" [Arabido	1.0	0.774	0.831	2.2e-112
UNIPROTKB|F1NSS7	349	BRIX1 "Uncharacterized protein	0.782	0.547	0.536	2.3e-55
CGD|CAL0003537	292	CSI2 [Candida albicans (taxid:	0.971	0.811	0.448	2.1e-54
UNIPROTKB|Q5A3N8	292	CSI2 "Likely nucleolar ribosom	0.971	0.811	0.448	2.1e-54
UNIPROTKB|Q3SZZ0	353	BRIX1 "Ribosome biogenesis pro	0.774	0.535	0.532	4.3e-54
UNIPROTKB|Q8TDN6	353	BRIX1 "Ribosome biogenesis pro	0.774	0.535	0.532	4.3e-54
UNIPROTKB|F1SND4	353	BRIX1 "Uncharacterized protein	0.774	0.535	0.532	4.3e-54
SGD|S000005437	291	BRX1 "Nucleolar protein" [Sacc	0.946	0.793	0.459	8.9e-54
MGI|MGI:1915082	353	Brix1 "BRX1, biogenesis of rib	0.774	0.535	0.532	1.1e-53

TAIR|locus:2011486 AT1G52930 [Arabidopsis thaliana (taxid:3702)]

 Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
 Identities = 202/244 (82%), Positives = 219/244 (89%)

Query:     1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
             MLN+VSLLPHCKKD+KVEAKSSKGATLNEL+ELK+ +SCLFFECRKHKDLY+WM KSPNG
Sbjct:    75 MLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRKHKDLYMWMVKSPNG 134

Query:    61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
             PSVKFLV AVH MEE+KLTGNHLK SRPLLTFSSNF KDAHWKL+KEM+ Q+FG PKEHR
Sbjct:   135 PSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLKEMLTQVFGIPKEHR 194

Query:   121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
             KSKPYHDHVFVFSIVD+HIWFRNYQI+VPHNESDK+A+GGLDKMTL+EVGPRFCLNPIKI
Sbjct:   195 KSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKMTLIEVGPRFCLNPIKI 254

Query:   181 FGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXTRRKMHELSNPLEPDEFAD 240
             F GSFGGPTLYENP YVSPNQIRALE               TR+KMHELSNPLEPDEFAD
Sbjct:   255 FAGSFGGPTLYENPLYVSPNQIRALEKRNKAGKFAKKIKAKTRKKMHELSNPLEPDEFAD 314

Query:   241 MWKE 244
             MWK+
Sbjct:   315 MWKD 318

GO:0005634 "nucleus" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0000741 "karyogamy" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

TAIR|locus:2090131 AT3G15460 "AT3G15460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 203/244 (83%), Positives = 215/244 (88%)

Query:     1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
             MLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKDLY+WM KSP G
Sbjct:    71 MLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDLYMWMVKSPGG 130

Query:    61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
             PSVKFLVNAVHTMEELKLTGNHLK SRPLLTFSSNF  DAHWKL+KEM+ QIFG P+ HR
Sbjct:   131 PSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQIFGIPEGHR 190

Query:   121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
             KSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EVGPRFCLNPIKI
Sbjct:   191 KSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVGPRFCLNPIKI 250

Query:   181 FGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXTRRKMHELSNPLEPDEFAD 240
             FGGSFGG TLYENPFYVSPNQIRALE               TRRKMHELSNPLEPDEF D
Sbjct:   251 FGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHELSNPLEPDEFTD 310

Query:   241 MWKE 244
             MW +
Sbjct:   311 MWND 314

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

UNIPROTKB|F1NSS7 BRIX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 110/205 (53%), Positives = 143/205 (69%)

Query:     1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
             M ++ +L+PH K D K++ K  K   +NE+ E+K+C+ C+FFE +K +DLY+W++ +P G
Sbjct:    76 MQDLRTLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIFFEAKKKQDLYMWLSNTPQG 134

Query:    61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
             PS KFLV  +HT+ ELK+TGN L+ SRPLL+F   F K+ H+ L+KE+ IQIF TP+ H 
Sbjct:   135 PSAKFLVQNIHTLAELKMTGNCLRGSRPLLSFDPTFDKEPHYALLKELFIQIFSTPQYHP 194

Query:   121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
             KS+P+ DHVF F+I D  IWFRNYQI     E D          +LVE+GPRF LN IKI
Sbjct:   195 KSQPFVDHVFTFTITDKRIWFRNYQII----EEDA---------SLVEIGPRFVLNLIKI 241

Query:   181 FGGSFGGPTLYENPFYVSPNQIRAL 205
             F GSFGGPTLYENP Y SPN  R L
Sbjct:   242 FQGSFGGPTLYENPHYQSPNMHRRL 266

GO:0005730 "nucleolus" evidence=IEA

CGD|CAL0003537 CSI2 [Candida albicans (taxid:5476)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 109/243 (44%), Positives = 156/243 (64%)

Query:     3 NVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPS 62
             ++++LLPH +K+ K ++K +    LNE+ EL +C++  FFECRKH+DLYLW++K PNGP+
Sbjct:    46 DLLALLPHARKEPKFDSKKNLHQ-LNEVAELYNCNNIFFFECRKHQDLYLWISKPPNGPT 104

Query:    63 VKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKS 122
             +KF +  +HT++EL  TGN LK SRP+L+F  +F ++ H+KL+KEM +Q FG P   RKS
Sbjct:   105 LKFHIQNLHTLDELNFTGNCLKGSRPILSFDKSFLENDHYKLLKEMFLQTFGVPPNARKS 164

Query:   123 KPYHDHVFVFSIVDDHIWFRNYQI--TVPHNESDKVARG---GLDKMTLVEVGPRFCLNP 177
             KP+ DHV  FSIVD  IW RNYQI  T+   E+DK+       +D++ LVE+GPR  L  
Sbjct:   165 KPFIDHVMTFSIVDGKIWIRNYQINETLDVKENDKIEDDEDYDVDQLNLVEIGPRLVLTL 224

Query:   178 IKIFGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXTRRKMHELSNPLEPDE 237
             I +  GSF GP +YEN  YVSPN +RA                   RK+ + +  L+ D 
Sbjct:   225 ITVLEGSFSGPKIYENKQYVSPNFVRAQLKQQAADQAKSRSQAALERKIKKRNQVLKADP 284

Query:   238 FAD 240
              ++
Sbjct:   285 LSN 287

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0042134 "rRNA primary transcript binding" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0000027 "ribosomal large subunit assembly" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|Q5A3N8 CSI2 "Likely nucleolar ribosomal biogenesis factor BRX1p" [Candida albicans SC5314 (taxid:237561)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 109/243 (44%), Positives = 156/243 (64%)

Query:     3 NVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPS 62
             ++++LLPH +K+ K ++K +    LNE+ EL +C++  FFECRKH+DLYLW++K PNGP+
Sbjct:    46 DLLALLPHARKEPKFDSKKNLHQ-LNEVAELYNCNNIFFFECRKHQDLYLWISKPPNGPT 104

Query:    63 VKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKS 122
             +KF +  +HT++EL  TGN LK SRP+L+F  +F ++ H+KL+KEM +Q FG P   RKS
Sbjct:   105 LKFHIQNLHTLDELNFTGNCLKGSRPILSFDKSFLENDHYKLLKEMFLQTFGVPPNARKS 164

Query:   123 KPYHDHVFVFSIVDDHIWFRNYQI--TVPHNESDKVARG---GLDKMTLVEVGPRFCLNP 177
             KP+ DHV  FSIVD  IW RNYQI  T+   E+DK+       +D++ LVE+GPR  L  
Sbjct:   165 KPFIDHVMTFSIVDGKIWIRNYQINETLDVKENDKIEDDEDYDVDQLNLVEIGPRLVLTL 224

Query:   178 IKIFGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXTRRKMHELSNPLEPDE 237
             I +  GSF GP +YEN  YVSPN +RA                   RK+ + +  L+ D 
Sbjct:   225 ITVLEGSFSGPKIYENKQYVSPNFVRAQLKQQAADQAKSRSQAALERKIKKRNQVLKADP 284

Query:   238 FAD 240
              ++
Sbjct:   285 LSN 287

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|Q3SZZ0 BRIX1 "Ribosome biogenesis protein BRX1 homolog" [Bos taurus (taxid:9913)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 108/203 (53%), Positives = 143/203 (70%)

Query:     1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
             M ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct:    78 MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136

Query:    61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
             PS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF TP+ H 
Sbjct:   137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHP 196

Query:   121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
             KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKI
Sbjct:   197 KSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRFVLNLIKI 243

Query:   181 FGGSFGGPTLYENPFYVSPNQIR 203
             F GSFGGPTLYENP Y SPN  R
Sbjct:   244 FQGSFGGPTLYENPHYQSPNMHR 266

GO:0005730 "nucleolus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q8TDN6 BRIX1 "Ribosome biogenesis protein BRX1 homolog" [Homo sapiens (taxid:9606)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 108/203 (53%), Positives = 143/203 (70%)

Query:     1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
             M ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct:    78 MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136

Query:    61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
             PS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF TP+ H 
Sbjct:   137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHP 196

Query:   121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
             KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKI
Sbjct:   197 KSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRFVLNLIKI 243

Query:   181 FGGSFGGPTLYENPFYVSPNQIR 203
             F GSFGGPTLYENP Y SPN  R
Sbjct:   244 FQGSFGGPTLYENPHYQSPNMHR 266

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1SND4 BRIX1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 108/203 (53%), Positives = 143/203 (70%)

Query:     1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
             M ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct:    78 MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136

Query:    61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
             PS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF TP+ H 
Sbjct:   137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHP 196

Query:   121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
             KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKI
Sbjct:   197 KSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRFVLNLIKI 243

Query:   181 FGGSFGGPTLYENPFYVSPNQIR 203
             F GSFGGPTLYENP Y SPN  R
Sbjct:   244 FQGSFGGPTLYENPHYQSPNMHR 266

GO:0005730 "nucleolus" evidence=IEA

SGD|S000005437 BRX1 "Nucleolar protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 108/235 (45%), Positives = 146/235 (62%)

Query:     7 LLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFL 66
             LLPH +K+ K++ K      LNE+ EL +C++ LFFE RKH+DLYLW++K PNGP++KF 
Sbjct:    55 LLPHSRKEPKLDTKKDL-QQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFY 113

Query:    67 VNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYH 126
             +  +HTM+EL  TGN LK SRP+L+F   F    H++LIKE+++  FG P   RKSKP+ 
Sbjct:   114 IQNLHTMDELNFTGNCLKGSRPVLSFDQRFESSPHYQLIKELLVHNFGVPPNARKSKPFI 173

Query:   127 DHVFVFSIVDDHIWFRNYQITVPHNESDKVA-RGGLDKMTLVEVGPRFCLNPIKIFGGSF 185
             DHV  FSIVDD IW R Y+I+  H+  +K     G + ++LVE+GPRF +  I I  GSF
Sbjct:   174 DHVMSFSIVDDKIWVRTYEIS--HSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSF 231

Query:   186 GGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXTRRKMHELSNPLEPDEFAD 240
             GGP +YEN  YVSPN +RA                   RK+    N L  D  ++
Sbjct:   232 GGPKIYENKQYVSPNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSN 286

GO:0008097 "5S rRNA binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IEA;IPI

GO:0000027 "ribosomal large subunit assembly" evidence=IPI

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0042134 "rRNA primary transcript binding" evidence=IPI

MGI|MGI:1915082 Brix1 "BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 108/203 (53%), Positives = 141/203 (69%)

Query:     1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
             M ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+G
Sbjct:    78 MQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHG 136

Query:    61 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
             PS KFLV  +HT+ ELK+TGN LK SRPLL+F   F    H+ L+KE +IQIF TP+ H 
Sbjct:   137 PSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHP 196

Query:   121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
             KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKI
Sbjct:   197 KSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRFVLNLIKI 243

Query:   181 FGGSFGGPTLYENPFYVSPNQIR 203
             F GSFGGPTLYENP Y SPN  R
Sbjct:   244 FQGSFGGPTLYENPHYQSPNMHR 266

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q08235	BRX1_YEAST	No assigned EC number	0.4644	0.9631	0.8075	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110946	hypothetical protein (317 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•	•		•		0.761
	gw1.I.4832.1	hypothetical protein (422 aa)				•	•				0.744
	gw1.86.17.1	hypothetical protein (573 aa)				•	•		•		0.709
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•	•		•		0.699
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.640
	fgenesh4_pg.C_LG_XVII000484	hypothetical protein (433 aa)				•	•		•		0.626
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•					0.616
	grail3.0106016302	hypothetical protein (217 aa)				•	•		•		0.614
	fgenesh4_pg.C_LG_X000306	hypothetical protein (187 aa)				•	•				0.606
	eugene3.00090493	hypothetical protein (840 aa)				•	•				0.606

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
COG5154	283	COG5154, BRX1, RNA-binding protein required for 60	5e-72
pfam04427	176	pfam04427, Brix, Brix domain	4e-43
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	8e-36

>gnl|CDD|227483 COG5154, BRX1, RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

 Score =  221 bits (563), Expect = 5e-72
 Identities = 99/243 (40%), Positives = 142/243 (58%), Gaps = 8/243 (3%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
           M ++  L+PH KK+ K++ K + G  LNEL EL +C++ LFFE RK  DLYL  A+ PNG
Sbjct: 49  MKDLSRLVPHSKKEQKLDMKKNLG-QLNELAELYNCNNMLFFESRKRSDLYLMGARIPNG 107

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           P+VKF ++ +HTM+EL  TGN LK SRP+L+F   F    H K  KE++  IFG PK  R
Sbjct: 108 PTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGAR 167

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
           +SKP+ D V  F I+D  IW R Y+I   + +  K        + L E+GPRF +  IKI
Sbjct: 168 RSKPFIDKVLCFFILDGKIWVRCYEIGRENEDKSK-------DVKLEEIGPRFVMTVIKI 220

Query: 181 FGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD 240
             GSFGGP +Y+N  +VS   +RA  +   A     + ++   R++    N +  D   +
Sbjct: 221 LEGSFGGPAIYKNETFVSSTMVRAAIRNQAAENLFARKESNLERQVRAQQNVIPEDPLDN 280

Query: 241 MWK 243
           ++ 
Sbjct: 281 VFA 283

Length = 283

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score =  143 bits (363), Expect = 4e-43
 Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 18/180 (10%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 60
             ++  L P+ KK N+ + K      L E    K  +S L F   K K L L + + PNG
Sbjct: 15  AKDLRLLFPNAKKLNRGKKKLKD---LLEFAGEKGDTSLLVFGEHK-KPLNLTIGRLPNG 70

Query: 61  PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 120
           P+++F ++ V  ++++K  G   K SRPLL F+  F      KLIKE++  +F  P  H+
Sbjct: 71  PTLEFRISNVKLLKDIKGKGKGNKGSRPLLVFNGFFFTRLGLKLIKELLQDLFPGPNVHK 130

Query: 121 KSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 180
                 D V  FS   D I+FR+Y+                 K+ L E+GPRF L   +I
Sbjct: 131 IPLKGGDRVITFSNQRDTIFFRHYRYK--------------KKVELQEIGPRFTLKLRRI 176

Length = 176

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  125 bits (315), Expect = 8e-36
 Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELK-SCSSCLFFECRKHK-DLYLWMAKSP 58
             ++  L P   K N+     +K   L E    K +    + FE       L L + + P
Sbjct: 16  AKDLRRLFPPSTKINR---GKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLP 72

Query: 59  NGPSVKFLVNAVHTMEELK--LTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTP 116
           NGP++ F +  V   +ELK   TGN L  SRPLL F++ F +     LIKE+   +F  P
Sbjct: 73  NGPTLDFKILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGK--LIKELFQDLFPGP 130

Query: 117 KEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 175
            EH+KS P    V  FS  DD+I+FR+Y+I     +          ++ L E+GPRF L
Sbjct: 131 PEHKKSLPGLRRVVTFSNQDDYIFFRHYRIKFGKKKP---------RVELQEIGPRFTL 180

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
KOG2963	405	consensus RNA-binding protein required for 60S rib	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	100.0
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	99.98
KOG3031	307	consensus Protein required for biogenesis of the r	99.94
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	99.71
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	99.58
PRK03972	208	ribosomal biogenesis protein; Validated	99.48

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.7e-72  Score=485.56  Aligned_cols=229  Identities=68%  Similarity=1.096  Sum_probs=219.8

Q ss_pred             CccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhccC
Q 026077            1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTG   80 (244)
Q Consensus         1 m~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~g   80 (244)
                      |+|+..||||+++++|++++.++. .|+++|++++|+.++||+++|++|+||||++.|+|||++|.|+|+|||+|++++|
T Consensus        68 m~di~~Llph~k~dsk~d~~k~l~-~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpSvkFlv~n~hTM~Elkmtg  146 (299)
T KOG2971|consen   68 MKDISSLLPHSKKDSKLDRKKKLG-VLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPSVKFLVHNVHTMAELKMTG  146 (299)
T ss_pred             HHHHHHhcccccccchhhhcchHH-HHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCceEEehhhhhhHHHhCCcc
Confidence            789999999999999999888885 8999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCcccccCC
Q 026077           81 NHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGG  160 (244)
Q Consensus        81 n~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~~~~~g  160 (244)
                      ||++||+|+|+||.+|++.|||+++|++|+++|+.|..|++|+||+|||++|+|.||+||||+|||...           
T Consensus       147 N~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~IWfRnyqI~~~-----------  215 (299)
T KOG2971|consen  147 NCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKIWFRNYQISEE-----------  215 (299)
T ss_pred             ccccCCcceeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeEEEEEeEeccc-----------
Confidence            999999999999999999999999999999999999999999999999999999999999999999632           


Q ss_pred             cccceEEEecccceeeEEEeecCCCccceeeecCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhcCCCCCCCh-hh
Q 026077          161 LDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDE-FA  239 (244)
Q Consensus       161 ~~~v~L~EIGPRf~L~l~kI~~G~f~G~vly~~~~~~s~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  239 (244)
                       +.+.|+||||||+|++++|++|+|+|++||+|+.|+||+.+|++.|+.++.+| +|++++.+|+.|+.++++++|| ++
T Consensus       216 -ed~~L~EiGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~~k~~~a~k~-~k~ka~~~rkir~~~~~l~~d~vf~  293 (299)
T KOG2971|consen  216 -EDKTLIEIGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAVIKKQAAGKY-QKVKAKTERKIRALENVLEEDPVFA  293 (299)
T ss_pred             -cCcceeeeccHHHHhHHHHHhccCCCceeecCccccCHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHhcCCCCCCchhh
Confidence             35899999999999999999999999999999999999999999999999999 8899999999999999999999 55


Q ss_pred             hccc
Q 026077          240 DMWK  243 (244)
Q Consensus       240 ~~f~  243 (244)
                      ++|.
T Consensus       294 ~~~~  297 (299)
T KOG2971|consen  294 DMAK  297 (299)
T ss_pred             hhhc
Confidence            5554

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.7e-66  Score=439.31  Aligned_cols=235  Identities=42%  Similarity=0.751  Sum_probs=225.3

Q ss_pred             CccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhccC
Q 026077            1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTG   80 (244)
Q Consensus         1 m~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~g   80 (244)
                      |+||..|+||++++.|||.|+++. .|+++|+.++|++++||+++|++++|||+++.|+|||++|+++|.|||+|+.++|
T Consensus        49 ~~Dls~l~phskke~KlD~kk~l~-qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGptvkF~~~NlhTMdelNftg  127 (283)
T COG5154          49 MKDLSRLVPHSKKEQKLDMKKNLG-QLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGPTVKFRMHNLHTMDELNFTG  127 (283)
T ss_pred             HHHHHHhCcccccccccchhhhHH-HHHHHHHHhcCCceEEEeecccccceeeeccCCCCCeEEEEEeccchHhhcCCcc
Confidence            689999999999999999999996 7999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCcccccCC
Q 026077           81 NHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGG  160 (244)
Q Consensus        81 n~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~~~~~g  160 (244)
                      ||++||+|.|+||+.|++.||++.+|+++++.|..|+..+.|+||+|||++|++.||+||+|.|.|.....       .+
T Consensus       128 N~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i~DgkIWvR~YeI~re~e-------d~  200 (283)
T COG5154         128 NSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWVRCYEIGRENE-------DK  200 (283)
T ss_pred             ccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEEecCeEEEEEEeeccccc-------cc
Confidence            99999999999999999999999999999999999999999999999999999999999999999953211       12


Q ss_pred             cccceEEEecccceeeEEEeecCCCccceeeecCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhcCCCCCCChhhh
Q 026077          161 LDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFAD  240 (244)
Q Consensus       161 ~~~v~L~EIGPRf~L~l~kI~~G~f~G~vly~~~~~~s~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (244)
                      .++|+|+||||||+|++++|.+|+|+|++||.|..|+|++.+|++.+.++++.+..|++...+|+.+.+++++|+||||+
T Consensus       201 ~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~vra~ir~qaae~~~~R~es~~er~vr~~~nvi~~dpl~n  280 (283)
T COG5154         201 SKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVRAAIRNQAAENLFARKESNLERQVRAQQNVIPEDPLDN  280 (283)
T ss_pred             cccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCchhh
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q 026077          241 MWK  243 (244)
Q Consensus       241 ~f~  243 (244)
                      ||.
T Consensus       281 ~f~  283 (283)
T COG5154         281 VFA  283 (283)
T ss_pred             hcC
Confidence            995

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.6e-50  Score=360.37  Aligned_cols=218  Identities=22%  Similarity=0.345  Sum_probs=183.7

Q ss_pred             ccccccC-CCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhcc-
Q 026077            2 LNVVSLL-PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLT-   79 (244)
Q Consensus         2 ~Dl~~l~-P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~-   79 (244)
                      .|||+|| |||+..+|..++|+++ +....|.-.|+||+++|+.+.. .++|.|+|+|.|||++|+|..|++.+|+... 
T Consensus        45 ~DlR~iMeP~TA~~LkerK~N~iK-Dfv~~~gplGVTH~l~lskt~~-nlslki~R~PqGPTLtFkV~qYsLardV~~~q  122 (405)
T KOG2963|consen   45 LDLRRIMEPHTASNLKERKRNKLK-DFVVMSGPLGVTHLLMLSKTET-NLSLKIARTPQGPTLTFKVHQYSLARDVVSLQ  122 (405)
T ss_pred             HHHHHhhCcchhhHHHHHhhhhhh-hHHhhcccccceEEEEEecccC-ceeEEEEecCCCCceEEEeeehhhHHHHHHHH
Confidence            5999998 9999999998888543 3333444456999999999986 6999999999999999999999999998753 


Q ss_pred             -----CCCCCCCCcEEEEcCCCCCc--hhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEE--eCCEEEEEEEEEeccc
Q 026077           80 -----GNHLKASRPLLTFSSNFGKD--AHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSI--VDDHIWFRNYQITVPH  150 (244)
Q Consensus        80 -----gn~~~~s~PlLvf~~~F~~~--~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~--~~~~I~fRhY~I~~~~  150 (244)
                           .|...-++|+||+| +|++.  +|++|+..|||+|||+++++++++..|+||++++|  .++.|.||||.|.+.+
T Consensus       123 krp~~~~~~Fk~pPLlVmN-gFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllinyn~dt~eIdmRHysI~vvp  201 (405)
T KOG2963|consen  123 KRPKSPNDLFKSPPLLVLN-GFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLINYNRDTGEIDMRHYSIRVVP  201 (405)
T ss_pred             hCCCCchhhccCCCEEEEc-cCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEecCCCCCeeeeeeeEEEEEe
Confidence                 22233499999999 99975  89999999999999999999999999999999999  5677999999999988


Q ss_pred             CCCc--------------ccccC------------------------------------------------------Ccc
Q 026077          151 NESD--------------KVARG------------------------------------------------------GLD  162 (244)
Q Consensus       151 ~~~~--------------~~~~~------------------------------------------------------g~~  162 (244)
                      +|.+              .+||.                                                      .++
T Consensus       202 VGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~~~eveL~q~~~s~g~~~~qks  281 (405)
T KOG2963|consen  202 VGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDVKEEVELPQPKASRGNQPPQKS  281 (405)
T ss_pred             cccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccchhhhhccccccccCCCccccc
Confidence            8765              23540                                                      045


Q ss_pred             cceEEEecccceeeEEEeecCCCccceeeecCCCCCHHHHHHHHHHHH---hhhHHHHHHHHH
Q 026077          163 KMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNK---AGKYAKKVKAKT  222 (244)
Q Consensus       163 ~v~L~EIGPRf~L~l~kI~~G~f~G~vly~~~~~~s~~e~~~~~k~~~---~~~~~~~~~~~~  222 (244)
                      .|+|+||||||||+|+||+||.|+|.||||.++.+|++|+.++.+..+   ++|.+++++|++
T Consensus       282 aikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eEi~~l~~~~ekk~~lKeqRkkeQ~e  344 (405)
T KOG2963|consen  282 AIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEEIKALRKRHEKKRRLKEQRKKEQEE  344 (405)
T ss_pred             ceeeEeecccceEEEEEeeccccccceEEeehhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999988865433   345555555544

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=7.2e-40  Score=278.38  Aligned_cols=173  Identities=38%  Similarity=0.587  Sum_probs=64.8

Q ss_pred             CccccccC-CCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhcc
Q 026077            1 MLNVVSLL-PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLT   79 (244)
Q Consensus         1 m~Dl~~l~-P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~   79 (244)
                      |+||+.++ ||+.+..|. +.+.+. ++.++|...+|++++++++++++|.+|||+++|+|||++|+|+||++++|++..
T Consensus        15 ~~DL~~l~~p~s~~~~r~-~~~~l~-~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I~~~~~~~~~~~~   92 (191)
T PF04427_consen   15 MKDLRSLFPPNSKKLNRK-KKNSLK-DLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSIENYKLMKDIKSS   92 (191)
T ss_dssp             HHHHHTTS-TTEEE---T-T---HH-HHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEEEEEE-HHHHT--
T ss_pred             HHHHHHHcCCCeEEEeCC-CCCchH-HHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEEEeEEEhhHhccc
Confidence            57999999 888874433 222454 799999999999999999998889999999999999999999999999999876


Q ss_pred             CCCCCCCCcEEEEcCCCCC--chhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCE-EEEEEEEEecccCCCccc
Q 026077           80 GNHLKASRPLLTFSSNFGK--DAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDH-IWFRNYQITVPHNESDKV  156 (244)
Q Consensus        80 gn~~~~s~PlLvf~~~F~~--~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~-I~fRhY~I~~~~~~~~~~  156 (244)
                      .....+++|+|||+ ||..  .++++++++||++|||++.++.+.++++||||+|++.+|. |||||| |..+  +. +.
T Consensus        93 ~~~~~~~~P~lif~-g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~Y-i~~~--~~-~~  167 (191)
T PF04427_consen   93 SKRPKGSRPLLIFN-GFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRHY-IFKS--GS-KN  167 (191)
T ss_dssp             -----S---EEEEE------------------------------------------------------------------
T ss_pred             ccCCCCCCeEEEEE-ecccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc--cc-cc
Confidence            55445789999999 6654  4899999999999999999999999999999999999888 999999 7322  21 12


Q ss_pred             ccCCcccceEEEecccceeeEEEe
Q 026077          157 ARGGLDKMTLVEVGPRFCLNPIKI  180 (244)
Q Consensus       157 ~~~g~~~v~L~EIGPRf~L~l~kI  180 (244)
                      ++.....|+|+||||||+|+|+||
T Consensus       168 ~~~~~~~v~L~EiGPr~~l~l~kI  191 (191)
T PF04427_consen  168 PKKLLPRVELVEIGPRFTLKLRKI  191 (191)
T ss_dssp             ------------------------
T ss_pred             ccccccccccccccccccccccCC
Confidence            210113589999999999999987

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>smart00879 Brix Brix domain

Probab=100.00  E-value=3.9e-34  Score=239.81  Aligned_cols=161  Identities=39%  Similarity=0.565  Sum_probs=138.6

Q ss_pred             CccccccCCCceecccccccCcccccHHHHHhhc-CCceEEEEEec-CCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhc
Q 026077            1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELK-SCSSCLFFECR-KHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKL   78 (244)
Q Consensus         1 m~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~-~~s~~i~~~~~-kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~   78 (244)
                      ++||+.++|++.+..+.+  +.+ ..+.++|..+ +|+++++++.+ +++|.+||++++|+|||+.|.+.++++++|+..
T Consensus        16 ~~dL~~~~~~~~~~~r~~--~~~-~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~i~~v~~~~~~~~   92 (180)
T smart00879       16 AKDLRRLFPPSTKINRGK--NKL-NELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFKILNVSLRKELKG   92 (180)
T ss_pred             HHHHHHHCCCcEeecccC--ccH-HHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEEEECcccHhhhhh
Confidence            579999998887744332  334 3688888887 78999999886 667899999999999999999999999999987


Q ss_pred             --cCCCCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCccc
Q 026077           79 --TGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV  156 (244)
Q Consensus        79 --~gn~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~~  156 (244)
                        .+|+..+++|+|+|+ +|....+ +++++||+++|+.++.+.+++++++||++|++.+|.||||||+|.+..      
T Consensus        93 ~~~~~~~~~~~P~li~~-~~~~~~~-~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y~i~~~~------  164 (180)
T smart00879       93 FKTGNCLTGSRPLLIFN-NFFTELG-KLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRIKFGK------  164 (180)
T ss_pred             hhcCCCcCCCccEEEEC-CCCCchH-HHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEEEEEccC------
Confidence              578888899999999 7776555 789999999999999999999999999999999999999999997511      


Q ss_pred             ccCCcccceEEEeccccee
Q 026077          157 ARGGLDKMTLVEVGPRFCL  175 (244)
Q Consensus       157 ~~~g~~~v~L~EIGPRf~L  175 (244)
                         +.++++|+||||||+|
T Consensus       165 ---~~~~v~l~eiGPr~~l  180 (180)
T smart00879      165 ---KKPRVELQEIGPRFTL  180 (180)
T ss_pred             ---CCCceEEEEecCCccC
Confidence               1247999999999986

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=100.00  E-value=9.4e-33  Score=240.37  Aligned_cols=180  Identities=20%  Similarity=0.298  Sum_probs=159.8

Q ss_pred             ccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhccCC
Q 026077            2 LNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGN   81 (244)
Q Consensus         2 ~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~gn   81 (244)
                      ++|+.++||+..   +++++...-.|.+.|..+|+|.+|+++++++.|..|.||++|.|||+.|.+.|+.+.+|+...|+
T Consensus       102 KelkLvfPNaqr---~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPfGPTa~Fsl~nvVmRhdip~~G~  178 (290)
T KOG2781|consen  102 KELKLVFPNAQR---LNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPFGPTAFFSLHNVVMRHDIPDIGT  178 (290)
T ss_pred             HhheEeccChhh---hcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCCCCceEeeeeeeeeccccccccc
Confidence            578889999997   88887643368888999999999999999999999999999999999999999999999998887


Q ss_pred             CCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCcccccCCc
Q 026077           82 HLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL  161 (244)
Q Consensus        82 ~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~~~~~g~  161 (244)
                      .+- ..|+|||| ||++..+. +++++|..+||+|...      .+|||+|.+.+|.|.||||.|....          .
T Consensus       179 msE-~~phlIfd-Nf~t~lG~-Rv~~iLkhLFP~pk~d------s~Rvvtf~N~~DyIsFRhhvy~~~~----------~  239 (290)
T KOG2781|consen  179 MSE-QKPHLIFD-NFTTKLGK-RVKTILKHLFPVPKDD------SKRVVTFANRNDYISFRHHVYKKTD----------G  239 (290)
T ss_pred             ccc-cCceEEec-cccchHHH-HHHHHHHHhCCCCcCC------cccEEEEecCCceEEEEEEEEecCC----------C
Confidence            653 79999999 99998875 7999999999998876      6999999999999999999996432          1


Q ss_pred             ccceEEEecccceeeEEEeecCCCc---cceeeecCCCCCHHHHH
Q 026077          162 DKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYENPFYVSPNQIR  203 (244)
Q Consensus       162 ~~v~L~EIGPRf~L~l~kI~~G~f~---G~vly~~~~~~s~~e~~  203 (244)
                      +.++|.|+||||.|+|+-|..|++.   +++.|....|+.....|
T Consensus       240 k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~kR  284 (290)
T KOG2781|consen  240 KEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARKR  284 (290)
T ss_pred             ceEEEeeccccceeeeeeeeecceeccccceeEEecchhcchhhh
Confidence            4699999999999999999999984   99999999998765443

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=99.98  E-value=4.7e-32  Score=238.46  Aligned_cols=172  Identities=21%  Similarity=0.348  Sum_probs=147.6

Q ss_pred             ccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhccCC
Q 026077            2 LNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGN   81 (244)
Q Consensus         2 ~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~gn   81 (244)
                      ..|+.++||+..  +...+-.++ .|.++|...++|+++++...++.+..|.|+++|+|||++|.+.||.+.+|++..|+
T Consensus       116 ~eL~~iiPNs~~--~~R~~~~vk-~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GPT~~Fkls~~~~~kdi~k~g~  192 (302)
T KOG2780|consen  116 SELLDIIPNSTV--KKRDNYTVK-SIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGPTAYFKLSNVVLTKDIKKHGR  192 (302)
T ss_pred             HHHHHhCCCceE--EecCCchHH-HHHHHHHHhcCCceEEEecCcCCccceEEEecCCCCceEEEeecccchhhhhhcCC
Confidence            467788999977  233334455 78899999999999998766556789999999999999999999999999999995


Q ss_pred             CCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCcccccCCc
Q 026077           82 HLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL  161 (244)
Q Consensus        82 ~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~~~~~g~  161 (244)
                      .- +..|.|++| ||++..++ .+.+||++|||.++.-+     .+||++|+++.|.|+||||+|.+++.+.        
T Consensus       193 ~t-~h~PElIlN-NFtTrlG~-~v~r~f~sLfp~~p~f~-----gRrvvtFhnQrD~IfFRhhRY~Fkee~~--------  256 (302)
T KOG2780|consen  193 PT-SHIPELILN-NFTTRLGM-TVGRLFASLFPHDPQFT-----GRRVVTFHNQRDYIFFRHHRYEFKEEEI--------  256 (302)
T ss_pred             cc-cccchhhhh-cccchhhH-HHHHHHHHhCCCCcccc-----ceeEEEEEecCceEEEEEEEEeeccccc--------
Confidence            43 489999999 99999988 68999999999987543     6999999999999999999999876442        


Q ss_pred             ccceEEEecccceeeEEEeecCCCc---cceeeec
Q 026077          162 DKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYEN  193 (244)
Q Consensus       162 ~~v~L~EIGPRf~L~l~kI~~G~f~---G~vly~~  193 (244)
                       ++.|+|+||||||+|.+.++|.|+   |+.-|.-
T Consensus       257 -kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~  290 (302)
T KOG2780|consen  257 -KVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVH  290 (302)
T ss_pred             -ccchhhcCCceeeeehhhhhccccccceeeeeee
Confidence             689999999999999999999995   7777754

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1e-27  Score=212.19  Aligned_cols=172  Identities=17%  Similarity=0.317  Sum_probs=153.3

Q ss_pred             Ccccccc-CCCceecccccccCccc-----ccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCC---CeEEEEeeeeE
Q 026077            1 MLNVVSL-LPHCKKDNKVEAKSSKG-----ATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG---PSVKFLVNAVH   71 (244)
Q Consensus         1 m~Dl~~l-~P~s~~~~K~~~k~~l~-----~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~G---PT~~F~V~n~~   71 (244)
                      |.||-.| -|.+..   ++++|+++     ..|..|.++.+|+.+++.++++++|.+|+|||++++   +++++.|+||.
T Consensus        46 m~dl~alKKp~~i~---~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~~yk  122 (307)
T KOG3031|consen   46 MKDLYALKKPLEIR---YNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIELGIENYK  122 (307)
T ss_pred             HHHHHHhccCceee---eccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHHHhhhhhh
Confidence            4566666 377665   67777664     358899999999999999999999999999999999   99999999999


Q ss_pred             ehHhhhccCCCCCCCCcEEEEcC-CCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCE-EEEEEEEEecc
Q 026077           72 TMEELKLTGNHLKASRPLLTFSS-NFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDH-IWFRNYQITVP  149 (244)
Q Consensus        72 ~~~dlk~~gn~~~~s~PlLvf~~-~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~-I~fRhY~I~~~  149 (244)
                      +.+|++.++ +..|+.|+|+|.+ .|++.+.++.++++|.++|.++.++.+.+.+++||++|+..++. |+||+|.+..+
T Consensus       123 slsdF~~~k-~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~Y~lklk  201 (307)
T KOG3031|consen  123 SLSDFKAAK-ITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRVYRLKLK  201 (307)
T ss_pred             hhhhhhccC-CCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeeeeeeeee
Confidence            999998854 6678999999995 99999999999999999999999999999999999999997665 99999999999


Q ss_pred             cCCCcccccCCcccceEEEecccceeeEEEeec
Q 026077          150 HNESDKVARGGLDKMTLVEVGPRFCLNPIKIFG  182 (244)
Q Consensus       150 ~~~~~~~~~~g~~~v~L~EIGPRf~L~l~kI~~  182 (244)
                      .++.. +|     +++|+||||+++|++.++.-
T Consensus       202 Ks~~~-~P-----RiELeE~GPsldf~irR~~~  228 (307)
T KOG3031|consen  202 KSGTR-TP-----RIELEEMGPSLDFEIRRTKL  228 (307)
T ss_pred             eccCC-CC-----ceehhhcCCceeEEEEeccC
Confidence            88763 44     89999999999999999873

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=9.6e-18  Score=146.58  Aligned_cols=158  Identities=17%  Similarity=0.328  Sum_probs=136.1

Q ss_pred             ccccCccc-----ccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCC---CeEEEEeeeeEehHhhhccCCCCCCCCc
Q 026077           17 VEAKSSKG-----ATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG---PSVKFLVNAVHTMEELKLTGNHLKASRP   88 (244)
Q Consensus        17 ~~~k~~l~-----~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~G---PT~~F~V~n~~~~~dlk~~gn~~~~s~P   88 (244)
                      +.+|++++     ..|+.|.++++|+..++|++.+|+..+|.++|.++.   ++++|.|.+|.+..|+..+|-.+ |..|
T Consensus        60 f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~~~~-g~Kp  138 (316)
T COG5106          60 FIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECAGPEL-GMKP  138 (316)
T ss_pred             cccCCcccccccCCHHHHHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhccCCcc-CCce
Confidence            56666654     358889999999999999999998999999999998   89999999999999999877654 6999


Q ss_pred             EEEEcC-CCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEe----CC----EEEEEEEEEecccCCCcccccC
Q 026077           89 LLTFSS-NFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIV----DD----HIWFRNYQITVPHNESDKVARG  159 (244)
Q Consensus        89 lLvf~~-~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~----~~----~I~fRhY~I~~~~~~~~~~~~~  159 (244)
                      .++|.+ +|+..|.++.++++|.++|.+.........+..+||+-+.+    |.    .+.||.|....-++.. .+|  
T Consensus       139 mv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVyk~k~~kt~~-~lp--  215 (316)
T COG5106         139 MVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVYKTKLLKTKT-NLP--  215 (316)
T ss_pred             EEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeeeecccccccC-CCC--
Confidence            999985 99999999999999999999988777778889999999973    32    2789999987544333 255  


Q ss_pred             CcccceEEEecccceeeEEEee
Q 026077          160 GLDKMTLVEVGPRFCLNPIKIF  181 (244)
Q Consensus       160 g~~~v~L~EIGPRf~L~l~kI~  181 (244)
                         +++|+|+|||+++++.+++
T Consensus       216 ---r~elee~GPrldf~i~R~~  234 (316)
T COG5106         216 ---RLELEECGPRLDFEIVRSY  234 (316)
T ss_pred             ---ceehhhcccceeeEEEeec
Confidence               8999999999999999998

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=99.58  E-value=2.5e-14  Score=122.78  Aligned_cols=161  Identities=22%  Similarity=0.263  Sum_probs=136.2

Q ss_pred             ccccccCCCceecccccc-cCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeC-CCCCeEEEEeeeeEehHhhhcc
Q 026077            2 LNVVSLLPHCKKDNKVEA-KSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKS-PNGPSVKFLVNAVHTMEELKLT   79 (244)
Q Consensus         2 ~Dl~~l~P~s~~~~K~~~-k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~-P~GPT~~F~V~n~~~~~dlk~~   79 (244)
                      +||..++|++..   +.+ +.++. .|.+.|...|.+.+++..+.++.|..|.+.++ |.||++.|.+.|+.+.+++...
T Consensus        21 k~L~~~lp~~~~---~~rg~~~~~-el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~~f~l~~v~l~re~~~~   96 (191)
T COG2136          21 KDLSRVLPNAYF---LRRGKKSII-ELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTFSFKLSGVKLRREIPVL   96 (191)
T ss_pred             HHHHHhCCcceE---EecCccchh-HHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceEEEEEecceEEEecccc
Confidence            688999999988   333 23343 68888999999999999999999999999999 9999999999999999999887


Q ss_pred             CCCCCCCCcEEEEcCCCCCchhHHHHHHHHHhh----CCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEEecccCCCcc
Q 026077           80 GNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQI----FGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDK  155 (244)
Q Consensus        80 gn~~~~s~PlLvf~~~F~~~~~lklik~~f~~l----F~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I~~~~~~~~~  155 (244)
                      ++....+.|.++++ +|.+..+...+.++|..+    |+.-...     ....|+.+...++.+.||.+...+..     
T Consensus        97 ~~~~~~~~~~~I~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-----~~~~v~~~~~~~~f~~~~~~~~~~~~-----  165 (191)
T COG2136          97 GPKSRLHGPELIFN-NFTTLLGFLKVAEAFSELLLVKFVPNPAW-----EHELVATGANKGDFKSLRRHRRVFEE-----  165 (191)
T ss_pred             CCcccCCCCceeee-cccccccchhhHHHHHhhcccccccCccc-----ceeeeeeccccceEEEEEeeeeEeee-----
Confidence            77444589999999 999988877899999999    6554432     25788999999999999998876542     


Q ss_pred             cccCCcccceEEEecccceeeEEEeecC
Q 026077          156 VARGGLDKMTLVEVGPRFCLNPIKIFGG  183 (244)
Q Consensus       156 ~~~~g~~~v~L~EIGPRf~L~l~kI~~G  183 (244)
                            ..+.+.|+||||+|++.++++|
T Consensus       166 ------~~~~~~~vgp~~~~r~~~~~~g  187 (191)
T COG2136         166 ------DGIGLEEVGPRLTLRLWRMEDG  187 (191)
T ss_pred             ------eeeeEEEeCceeeeehhhhhhc
Confidence                  3688999999999999999988

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.48  E-value=2e-12  Score=111.99  Aligned_cols=163  Identities=13%  Similarity=0.064  Sum_probs=120.2

Q ss_pred             CccccccCCCceeccccccc-CcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCC---CeEEEEeeeeEehHhh
Q 026077            1 MLNVVSLLPHCKKDNKVEAK-SSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG---PSVKFLVNAVHTMEEL   76 (244)
Q Consensus         1 m~Dl~~l~P~s~~~~K~~~k-~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~G---PT~~F~V~n~~~~~dl   76 (244)
                      ++||..++||+.+   +.++ .+++ +|.+.|...|.+++|++.+.++.|..|.|+++|+|   ||++|+|.|+.+.+|+
T Consensus        18 ~keL~~v~Pns~~---i~RGk~~lk-el~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~FkLsnV~l~~ei   93 (208)
T PRK03972         18 GHDLERVFPNSLY---LTRGKKTIQ-DLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGYLYLHGIKLQREM   93 (208)
T ss_pred             HHHHHHhCCCCEE---EecCCccHH-HHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEEEEEccEEEHHHc
Confidence            3689999999987   5555 4454 67778888899999999999999999999999855   5999999999999999


Q ss_pred             --hccCCCCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCc--CCCC------CCCEEEEEEEeCCEEEEEEEEE
Q 026077           77 --KLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR--KSKP------YHDHVFVFSIVDDHIWFRNYQI  146 (244)
Q Consensus        77 --k~~gn~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~--~~~~------~~~rVi~F~~~~~~I~fRhY~I  146 (244)
                        +..|... .+.|++|.+ +|.+.+++......+-..++.+.+.+  .|+.      +.+-|+++.----..-+--|++
T Consensus        94 ~~~~~~~~s-~~~p~iItt-s~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLVV~~~~~~~~~~~~~~  171 (208)
T PRK03972         94 GFRNLRPIR-EDMPLVITT-AKRVGLDHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGVIERHPRGMAVNFYRL  171 (208)
T ss_pred             ccCCCCCcc-ccccEEEEc-CCCCCHHHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEEEecCCCceEEEEEEe
Confidence              4455544 489999999 99999877666667888888876665  3322      3356666654333335555666


Q ss_pred             ecccCCCcccccCCcccceEEEecccceeeEEEeecCC
Q 026077          147 TVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGS  184 (244)
Q Consensus       147 ~~~~~~~~~~~~~g~~~v~L~EIGPRf~L~l~kI~~G~  184 (244)
                      ....               -.-+||-+-.+....++|-
T Consensus       172 ~~~~---------------~~~~~~~~~~~~~~~~~~~  194 (208)
T PRK03972        172 DVTK---------------ERPVGPLIFVKIWIMEDGR  194 (208)
T ss_pred             cccc---------------ccccCCcEEEEEEEeccCc
Confidence            4321               2345888877777666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	99.85
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	98.31

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=99.85  E-value=3.7e-21  Score=166.82  Aligned_cols=113  Identities=11%  Similarity=0.096  Sum_probs=101.1

Q ss_pred             CccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCC---C-eEEEEeeeeEehHhh
Q 026077            1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG---P-SVKFLVNAVHTMEEL   76 (244)
Q Consensus         1 m~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~G---P-T~~F~V~n~~~~~dl   76 (244)
                      ++||..++||+.+..  +.+.+++ +|.+.|...+|+++++++++++.|.+|||+++|+|   | |++|+|.|+++++|+
T Consensus        52 akeL~~~lPns~~i~--Rgk~sLk-eL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G~~~P~Ta~F~I~nv~l~~ei  128 (217)
T 2cxh_A           52 VKDLSATIPGAFRFT--RGHYSME-ELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGPERPDNIVSFIVKGVSLSRER  128 (217)
T ss_dssp             HHHHHTTSTTEEECC--CTTCCHH-HHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSSSCCEEEEEEEEEEEECHHHH
T ss_pred             HHHHHHHCCCCEEee--cCCcCHH-HHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCCCCCCcEEEEEEeeEEehhhh
Confidence            478999999998743  2345665 78888999999999999999988999999999999   9 999999999999999


Q ss_pred             hccCCCCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCC
Q 026077           77 KLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEH  119 (244)
Q Consensus        77 k~~gn~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~  119 (244)
                      +.+|||+.+++|+|+ + +|++. +++++++||+++||.|...
T Consensus       129 ~~~g~~~~~~rP~L~-~-nF~t~-~g~~i~~~f~~lFp~P~~~  168 (217)
T 2cxh_A          129 RWGLPSLRGGEVLVA-R-PLDSG-VAVEFADAFVIAFHARLKP  168 (217)
T ss_dssp             TCCCCCCCSCCEEEE-E-ESSSS-THHHHHHHHHHHHCCBSSC
T ss_pred             ccCCCccCCCCceEE-e-eecCc-hHHHHHHHHHHHcCCCCCC
Confidence            999999999999999 7 99987 6789999999999998763

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=98.31  E-value=8.5e-07  Score=72.91  Aligned_cols=67  Identities=6%  Similarity=0.009  Sum_probs=50.5

Q ss_pred             ccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhh
Q 026077            2 LNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELK   77 (244)
Q Consensus         2 ~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk   77 (244)
                      ++|..++ ++.+   +.|++.   .|.++++.+... ++++..+++.|..|.++++|+|||++|++ |+.+.+|+.
T Consensus        19 keLa~~l-n~~~---v~Rgk~---sl~~L~~~~~~~-~iVV~e~rg~P~~l~i~hlp~gpt~~f~~-nv~l~~~~~   85 (156)
T 1w94_A           19 QRLSRIM-GWRY---INRGKM---SLRDVLIEARGP-VAVVSERHGNPARITFLDERGGERGYILF-NPSFEMKKP   85 (156)
T ss_dssp             HHHHHHH-TCEE---CCCTTC---CHHHHHHHHSSC-EEEEEEETTEEEEEEEECTTSCEEEEEEE-EEEECSSCC
T ss_pred             HHHHHHh-CCEE---EeeCCc---CHHHHHHhcCCC-EEEEEcCCCCCCeEEEEeCCCCCEEEEEE-ceEEcccCc
Confidence            3556666 7766   555542   577877776555 55555565668999999999999999998 999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	3e-06

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 16/161 (9%), Positives = 40/161 (24%), Gaps = 32/161 (19%)

Query: 1   MLNVVSLLPHCKKDNKVEAKSSKGATLNELVEL---KSCSSCLFFECRKHKDLYLWMAKS 57
           + ++ + +P   +  +         ++ EL      +     +     +  +  +    +
Sbjct: 20  VKDLSATIPGAFRFTR------GHYSMEELAREAIIRGADRIVVVG-ERRGNPGIIRVYA 72

Query: 58  PNGPS-----VKFLVNAVHTMEELKLTGNHLKASRPLLT------FSSNFGKDAHWKLIK 106
             GP      V F+V  V    E +     L+    L+        +  F          
Sbjct: 73  VEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVEFA-----DAFV 127

Query: 107 EMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQIT 147
                    P+             V   +D       ++  
Sbjct: 128 IAFHARLKPPEA------AGYVEAVIESLDARTVAVTFRYG 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	99.89
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	99.52

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.89  E-value=4e-24  Score=178.73  Aligned_cols=134  Identities=11%  Similarity=0.036  Sum_probs=113.8

Q ss_pred             CccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCC-----eEEEEeeeeEehHh
Q 026077            1 MLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGP-----SVKFLVNAVHTMEE   75 (244)
Q Consensus         1 m~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GP-----T~~F~V~n~~~~~d   75 (244)
                      |+||+.+|||+.+-.  ..+.+++ +|.++|...|||++|+++++++.| +||++++|+||     |++|.|.|+++.+|
T Consensus        20 ~kdL~~v~Pns~~~~--R~k~~lk-~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~lP~GP~~~~~t~~F~l~nv~l~~e   95 (180)
T d2cxha1          20 VKDLSATIPGAFRFT--RGHYSME-ELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPERPDNIVSFIVKGVSLSRE   95 (180)
T ss_dssp             HHHHHTTSTTEEECC--CTTCCHH-HHHHHHHHTTEEEEEEEEEETTEE-EEEEEEECCSSSCCEEEEEEEEEEEECHHH
T ss_pred             HHHHHHhCCCCEEee--cCCCcHH-HHHHHHHHCCCCeEEEEEccCCCC-cEEEEECCCCCCCccceEEEEEEEEEEehh
Confidence            579999999998833  3556676 788899999999999999998865 79999999999     99999999999999


Q ss_pred             hhccCCC---CCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEEEE
Q 026077           76 LKLTGNH---LKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI  146 (244)
Q Consensus        76 lk~~gn~---~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY~I  146 (244)
                      ++....+   ...+.|.++|| ||.+..+. ++..+|+.+||.|...      .++|++|++++|.|++|+|.+
T Consensus        96 ~~~~~~~~~~~t~~~p~liln-nf~t~Lg~-~~~~~f~~lf~~p~~~------~~~vvt~~n~~d~if~~~~~~  161 (180)
T d2cxha1          96 RRWGLPSLRGGEVLVARPLDS-GVAVEFAD-AFVIAFHARLKPPEAA------GYVEAVIESLDARTVAVTFRY  161 (180)
T ss_dssp             HTCCCCCCCSCCEEEEEESSS-STHHHHHH-HHHHHHCCBSSCCSSS------CEEEEEEEEEETTEEEEEEEC
T ss_pred             hccccCCCCCCccccchhHhc-ccchHHHH-HHHHHHHhhCCCchhc------CcEEEEEEecCCeEEEEEEec
Confidence            9754222   12368999999 99987654 7888999999987654      689999999999999999998

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.52  E-value=1.1e-15  Score=123.95  Aligned_cols=117  Identities=7%  Similarity=0.070  Sum_probs=96.5

Q ss_pred             ccccccCCCceecccccccCcccccHHHHHhhcCCceEEEEEecCCCCCeEEEEeCCCCCeEEEEeeeeEehHhhhccCC
Q 026077            2 LNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGN   81 (244)
Q Consensus         2 ~Dl~~l~P~s~~~~K~~~k~~l~~~l~~~~~~~~~s~~i~~~~~kk~~~~L~i~r~P~GPT~~F~V~n~~~~~dlk~~gn   81 (244)
                      +||..++|++ +   +.+++.   .++++++.+ .++++++.+.++.|..|.+ ++|+|||++|.+.|+.+.+|      
T Consensus        18 keL~~i~P~~-~---~~Rgk~---~lkelv~~~-~tdlivv~E~rg~P~~l~i-h~p~gpt~~f~l~~v~l~~e------   82 (154)
T d1w94a1          18 QRLSRIMGWR-Y---INRGKM---SLRDVLIEA-RGPVAVVSERHGNPARITF-LDERGGERGYILFNPSFEMK------   82 (154)
T ss_dssp             HHHHHHHTCE-E---CCCTTC---CHHHHHHHH-SSCEEEEEEETTEEEEEEE-ECTTSCEEEEEEEEEEECSS------
T ss_pred             HHHHHhCCCe-E---EEcCCC---cHHHHHHhC-CCcEEEEECCCCCCceEEE-EeCCCCcEEEEEeeEEcccc------
Confidence            6888999985 4   456552   577776544 5889988888888888888 99999999999999987665      


Q ss_pred             CCCCCCcEEEEcCCCCCchhHHHHHHHHHhhCCCCCCCcCCCCCCCEEEEEEEeCCEEEEEEE
Q 026077           82 HLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNY  144 (244)
Q Consensus        82 ~~~~s~PlLvf~~~F~~~~~lklik~~f~~lF~~~~~~~~~~~~~~rVi~F~~~~~~I~fRhY  144 (244)
                           +|.++++ +|.+..+. .+.++|..+||.+.....    -++|++|++++|.||++||
T Consensus        83 -----~p~li~~-~f~t~lg~-~v~~~L~~lf~~~~~~~~----~~~~itf~n~~d~i~~~~~  134 (154)
T d1w94a1          83 -----KPELADK-AVRVSSCP-PGSEGLCNLMGLEVDESS----SRDAWSIRTDEEYAWVMEL  134 (154)
T ss_dssp             -----CCCCSSC-CCEESCCC-TTCHHHHHHHTCEECCSC----CTTEEEEECCSSSSEEEEE
T ss_pred             -----CCcCccc-ccccccch-hHHHHHHHHcCCChhhcc----eeeEEEEecCCCEEEEEEE
Confidence                 7899999 99998776 577999999999876542    2559999999999999999