Citrus Sinensis ID: 026094

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MQLQLRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHSSQSRHHSQWNMIQIGDECFCSVTFLLLTEMVNGV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccEEEccHHHHHHHHHHcccccEEEEEEEEccccEEEEEcccccccHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHccccEEEEEEccccccccccEEEEEEEEcccccEEEEEEEEEEEccccccccccccccccHHHcccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccHHHHHHHHcccccccccccHHHHcccccccccccccccccccccccccccHHHHEEEEEccccccccEEccHHHHHHcHHHHHHcHHcHEEEEEHHcccEEEEcccccccHHHHHHHHHHHHcccccccccEEcccccccccHHHHHHHcccEEEEEcccccEEcccHHHHHHHHHHHHHHHccccHHHHHEcccccccccccccccccEEEccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mqlqlrssssASALFSAvqvkppssppvrvkalftknpgsgtlknsnsntnpnpnpmasnprwaqktvtlpplrrgchlitPKIVKEIAQDLSEFKCGLAHLFLLHTSasltinenydsdvrddTETFLNkivpegrsaswkhtlegpddmpahikssmfgctltipitdgqlnmgtWQELHGCMLLLTSLLTSADWNMAVRasrcthssqsrhhSQWNMIQIGDECFCSVTFLLLTEMVNGV
Flexible Loop (DISEMBL)
MQLQLRSSSSASALFSavqvkppssppvrVKALFTknpgsgtlknsnsntnpnpnpmasnprWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNkivpegrsaswkhtlEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHSSQSRHHSQWNMIQIGDECFCSVTFLLLTEMVNGV
Low Complexity Region (SEG)
MqlqlrssssasalfsavqvkppssppvrvkALFTKNPGSGTLKnsnsntnpnpnpmasnpRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHSSQSRHHSQWNMIQIGDECFCSVTFLLLTEMVNGV
Disordered region (IsUnstruct)
****************************************************************QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP*******************HIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTH*****HHSQWNMIQIGDECFCSVTFLLLTEM****
Disordered Region (DISOPRED)
*************LFSAVQVKPPSSPPVRV**********************************QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVR********************IGDECFCSVTFLLLTEMVN**
Disordered Region (DISEMBL)
**************************PVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVR*************SQWNMIQIGDECFCSVTFLLLTEMVNGV
Disordered Region (DISPRO)
*****************VQVKPPSSPPVR******************************NPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRA**C*********SQWNMIQIGDECFCSVTFLLLTEMVNGV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLQLRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTSLLTSADWNMAVRASRCTHSSQSRHHSQWNMIQIGDECFCSVTFLLLTEMVNGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
O14155	142	UPF0047 protein C4A8.02c	yes	no	0.473	0.809	0.5	2e-28
P0AF48	138	UPF0047 protein YjbQ OS=E	N/A	no	0.469	0.826	0.495	3e-26
P0AF49	138	UPF0047 protein YjbQ OS=E	N/A	no	0.469	0.826	0.495	3e-26
P0A2L1	138	UPF0047 protein YjbQ OS=S	yes	no	0.469	0.826	0.504	2e-20
P0A2L2	138	UPF0047 protein YjbQ OS=S	N/A	no	0.469	0.826	0.504	2e-20
P74125	147	UPF0047 protein sll1880 O	N/A	no	0.485	0.802	0.414	5e-17
Q58481	138	UPF0047 protein MJ1081 OS	yes	no	0.386	0.681	0.446	4e-14
O05243	132	UPF0047 protein YugU OS=B	yes	no	0.390	0.719	0.333	9e-09
O28229	126	UPF0047 protein AF_2050 O	yes	no	0.341	0.658	0.337	2e-07
O26865	143	UPF0047 protein MTH_771 O	yes	no	0.436	0.741	0.285	3e-06

>sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 86/118 (72%), Gaps = 3/118 (2%)

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           Q+ +TL    +G ++IT  +VK++ + L  F  G  + F+ HTSA+LTINEN+D+D R D
Sbjct: 5   QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 63

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
               L+KIVPE  SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ++ 
Sbjct: 64  MNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQ 119

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 78/117 (66%), Gaps = 3/117 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            D E F  + VP+  + +++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQ
Sbjct: 61  HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQ 115

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 78/117 (66%), Gaps = 3/117 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            D E F  + VP+  + +++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQ
Sbjct: 61  HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQ 115

Escherichia coli O157:H7 (taxid: 83334)

>sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 79/117 (67%), Gaps = 3/117 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            D E    K VP+  +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQ
Sbjct: 61  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQ 115

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 79/117 (67%), Gaps = 3/117 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            D E    K VP+  +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQ
Sbjct: 61  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQ 115

Salmonella typhi (taxid: 90370)

>sp|P74125|Y1880_SYNY3 UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1880 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 5/123 (4%)

Query: 58  ASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENY 117
           A+  R  Q+ + +    +  H    KI + + Q  S  K GL  +F+ HTSASL I EN 
Sbjct: 5   AATFRQHQEILVIATQGKSLHNFNSKI-QAVVQH-SGVKTGLCTVFVRHTSASLIIQENA 62

Query: 118 DSDVRDDTETFLNKIVPE-GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 176
           D DV  D   F  ++VPE GR   ++H+ EG DDMPAHI+S++   +  IPI +G+L +G
Sbjct: 63  DPDVLTDLAIFFAQLVPEDGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLG 120

Query: 177 TWQ 179
           TWQ
Sbjct: 121 TWQ 123

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q58481|Y1081_METJA UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1081 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 9/103 (8%)

Query: 80  ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139
           ITP I+  I++  S+ K G+A +++ HT+A +TINEN D  V+ D   FL+ ++P+    
Sbjct: 23  ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPK---- 76

Query: 140 SWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
           +W  T LEG  D  AHIKSS+ GC+ TI I DG+  +GTWQ +
Sbjct: 77  NWNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQGI 117

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O05243|YUGU_BACSU UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3 SV=2

 Score = 60.8 bits (146), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 10/105 (9%)

Query: 84  IVKEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW 141
           I +E+   L E     G A ++  HT+A +TINEN D DV+ D     +++ P      W
Sbjct: 18  ITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYP------W 71

Query: 142 KHTLEG--PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGC 184
           +H L+     +  AH+KSS  G +  + + +G+L +GTWQ ++ C
Sbjct: 72  EHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFC 116

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O28229|Y2050_ARCFU UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2050 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 6/89 (6%)

Query: 94  EFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT-LEGPDDMP 152
           E + GL  ++  HT+ +L INE  +  + +D   F+ K+VP G+   +KH  L+   D  
Sbjct: 25  ESRDGLVLVYTPHTTTALVINEG-ERGLLEDILEFMEKLVPYGKG--YKHDRLDSNAD-- 79

Query: 153 AHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
           AH+K+++ G ++ +P+  G+L +GTWQ +
Sbjct: 80  AHLKATLLGNSVVVPVESGKLALGTWQRI 108

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|O26865|Y771_METTH UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_771 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 6/112 (5%)

Query: 72  PLR--RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFL 129
           PLR  R   LI    +     + S  + G+ ++F  H+++++ INEN +S +  D E+ L
Sbjct: 15  PLRTSRRVELIDITSMVSGVLESSGIRNGILNVFSRHSTSAIFINEN-ESRLLSDIESML 73

Query: 130 NKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
              VP    AS+ H     ++  +H+++ + G + T+P+ +G +++GTWQ +
Sbjct: 74  EGTVPV--DASYGHNAI-DNNADSHLRAVLLGGSQTVPVINGSMDLGTWQSI 122

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
225457713	236	PREDICTED: uncharacterized protein LOC10	0.728	0.75	0.648	3e-61
449455657	185	PREDICTED: UPF0047 protein C4A8.02c-like	0.658	0.864	0.714	1e-60
449527653	162	PREDICTED: UPF0047 protein C4A8.02c-like	0.625	0.938	0.745	1e-60
255539386	195	conserved hypothetical protein [Ricinus	0.699	0.871	0.685	3e-60
224065613	163	predicted protein [Populus trichocarpa]	0.596	0.889	0.738	4e-60
118481865	147	unknown [Populus trichocarpa]	0.518	0.857	0.873	1e-59
297845088	218	hypothetical protein ARALYDRAFT_472344 [	0.674	0.752	0.638	2e-59
297745635	148	unnamed protein product [Vitis vinifera]	0.510	0.837	0.870	4e-59
356521568	175	PREDICTED: UPF0047 protein yjbQ-like [Gl	0.510	0.708	0.862	3e-58
357475211	173	hypothetical protein MTR_4g084120 [Medic	0.526	0.739	0.820	9e-58

>gi|225457713|ref|XP_002277414.1| PREDICTED: uncharacterized protein LOC100252976 isoform 1 [Vitis vinifera]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/185 (64%), Positives = 138/185 (74%), Gaps = 8/185 (4%)

Query: 1   MQLQLRSSSSASALFSAVQVKPP-SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMAS 59
           +  + +      A   ++  KPP +S  +RVK+L+T         + N  T+        
Sbjct: 41  ITYKFKEEVPMQASLLSLGAKPPLTSHQIRVKSLYTPT-------SFNDPTDSTSMAAIP 93

Query: 60  NPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDS 119
            P+WAQKT+TLPP RRGCH ITPKI+KEI QDLS FKCGLAHLF+ HTSASLTINENYDS
Sbjct: 94  APKWAQKTITLPPQRRGCHHITPKILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDS 153

Query: 120 DVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           DVRDDTETFL+KIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDGQLNMGTWQ
Sbjct: 154 DVRDDTETFLSKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQ 213

Query: 180 ELHGC 184
            +  C
Sbjct: 214 GIWLC 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455657|ref|XP_004145568.1| PREDICTED: UPF0047 protein C4A8.02c-like isoform 1 [Cucumis sativus]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/161 (71%), Positives = 134/161 (83%), Gaps = 1/161 (0%)

Query: 24  SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPK 83
           ++ P+RVK L + N  +G    +  ++NP+    A+ P+WAQKTVTL P RRGCHLITPK
Sbjct: 8   AAQPLRVKLLRSNNSSTGNPSATAGSSNPS-FMAAAGPKWAQKTVTLSPHRRGCHLITPK 66

Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
           I+KEI QDLSEFKCGLAH+FL HTSASLTINENYDSDV++DTETFLNKIVPEG SA WKH
Sbjct: 67  IMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPEGTSAPWKH 126

Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGC 184
           TLEGPDDMPAHIKSS+FGC LTIPIT+G+LNMGTWQ +  C
Sbjct: 127 TLEGPDDMPAHIKSSLFGCALTIPITNGKLNMGTWQGIWLC 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527653|ref|XP_004170824.1| PREDICTED: UPF0047 protein C4A8.02c-like, partial [Cucumis sativus]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 130/153 (84%), Gaps = 1/153 (0%)

Query: 27  PVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVK 86
           P+RVK L + N  +G    +  ++NP+    A+ P+WAQKTVTL P RRGCHLITPKI+K
Sbjct: 11  PLRVKLLRSNNSSTGNPSATAGSSNPS-FMAAAGPKWAQKTVTLSPHRRGCHLITPKIMK 69

Query: 87  EIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLE 146
           EI QDLSEFKCGLAH+FL HTSASLTINENYDSDV++DTETFLNKIVPEG SA WKHTLE
Sbjct: 70  EIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPEGTSAPWKHTLE 129

Query: 147 GPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           GPDDMPAHIKSS+FGC LTIPIT+G+LNMGTWQ
Sbjct: 130 GPDDMPAHIKSSLFGCALTIPITNGKLNMGTWQ 162

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539386|ref|XP_002510758.1| conserved hypothetical protein [Ricinus communis] gi|223551459|gb|EEF52945.1| conserved hypothetical protein [Ricinus communis]

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/181 (68%), Positives = 137/181 (75%), Gaps = 11/181 (6%)

Query: 9   SSASALFSAVQVKP----PSSPPV-RVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRW 63
           +SA   FS+   KP     S+ PV RV +L+T  P S T  ++NS          S  +W
Sbjct: 3   ASAHLWFSSSAPKPVWLSASAAPVPRVNSLYTAKPSSLTNDSNNSMAT------TSTSKW 56

Query: 64  AQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
           AQKTVTL P RRGCHLIT KI+ EI  DLSEFKCGLAHLF+ HTSASLTINENYDSDVRD
Sbjct: 57  AQKTVTLSPHRRGCHLITSKILNEIGSDLSEFKCGLAHLFIQHTSASLTINENYDSDVRD 116

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHG 183
           DTETFLNKIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC LTIPIT+G+LNMGTWQ +  
Sbjct: 117 DTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCQLTIPITNGKLNMGTWQGIWL 176

Query: 184 C 184
           C
Sbjct: 177 C 177

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065613|ref|XP_002301884.1| predicted protein [Populus trichocarpa] gi|222843610|gb|EEE81157.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/157 (73%), Positives = 128/157 (81%), Gaps = 12/157 (7%)

Query: 28  VRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKE 87
           +RV +L+T  P   +  +S +          S P+WAQKT+TLPP RRGCHLITPKI+ E
Sbjct: 1   LRVSSLYTAKP---SFSDSMA---------TSAPKWAQKTITLPPHRRGCHLITPKILNE 48

Query: 88  IAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEG 147
           I  DLSEFKCGLAHLFL HTSASLTINENYDSDVRDDTETFLNKIVPEGRSA WKHTLEG
Sbjct: 49  IGSDLSEFKCGLAHLFLHHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEG 108

Query: 148 PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGC 184
           PDDMPAHIKSSMFGC+LTIPITDG+LNMGTWQ +  C
Sbjct: 109 PDDMPAHIKSSMFGCSLTIPITDGKLNMGTWQGIWLC 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481865|gb|ABK92869.1| unknown [Populus trichocarpa]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/126 (87%), Positives = 116/126 (92%)

Query: 59  SNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYD 118
           S P+WAQKT+TLPP RRGCHLITPKI+ EI  DLSEFKCGLAHLFL HTSASLTINENYD
Sbjct: 4   SAPKWAQKTITLPPHRRGCHLITPKILNEIGSDLSEFKCGLAHLFLHHTSASLTINENYD 63

Query: 119 SDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTW 178
           SDVRDDTETFLNKIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDG+LNMGTW
Sbjct: 64  SDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGKLNMGTW 123

Query: 179 QELHGC 184
           Q +  C
Sbjct: 124 QGIWLC 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845088|ref|XP_002890425.1| hypothetical protein ARALYDRAFT_472344 [Arabidopsis lyrata subsp. lyrata] gi|297336267|gb|EFH66684.1| hypothetical protein ARALYDRAFT_472344 [Arabidopsis lyrata subsp. lyrata]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/180 (63%), Positives = 136/180 (75%), Gaps = 16/180 (8%)

Query: 5   LRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWA 64
           L++  S++ LFS V        P+RV+++ T          +N  T+      +S P+WA
Sbjct: 37  LKAMQSSTILFSGVV-------PLRVRSVLTP---------ANPATDRASMASSSGPKWA 80

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           QKT+TLPPLRRGCHLITPKIVKEI QDLS+F CGLAH+FL HTSASLTINENYD DV+ D
Sbjct: 81  QKTITLPPLRRGCHLITPKIVKEIGQDLSDFNCGLAHVFLQHTSASLTINENYDPDVQAD 140

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGC 184
           TETFLN+IVPEG SA W+HT+EGPDDMPAHIKSSMFGC LTIPIT G+LNMGTWQ +  C
Sbjct: 141 TETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKLNMGTWQGIWLC 200

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745635|emb|CBI40800.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/124 (87%), Positives = 115/124 (92%)

Query: 61  PRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           P+WAQKT+TLPP RRGCH ITPKI+KEI QDLS FKCGLAHLF+ HTSASLTINENYDSD
Sbjct: 7   PKWAQKTITLPPQRRGCHHITPKILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDSD 66

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQE 180
           VRDDTETFL+KIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDGQLNMGTWQ 
Sbjct: 67  VRDDTETFLSKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQG 126

Query: 181 LHGC 184
           +  C
Sbjct: 127 IWLC 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521568|ref|XP_003529426.1| PREDICTED: UPF0047 protein yjbQ-like [Glycine max]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/124 (86%), Positives = 115/124 (92%)

Query: 61  PRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           P+WAQKTV+LPPLRRGCHL+T KIVKEI QDLS FKCGLAHLFL HTSASLTINENYDSD
Sbjct: 34  PKWAQKTVSLPPLRRGCHLVTSKIVKEIEQDLSGFKCGLAHLFLQHTSASLTINENYDSD 93

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQE 180
           VR+DTETFLN+IVPEG SA WKHTLEGPDDMPAHIKSSMFGCTLTIPIT+G+LNMGTWQ 
Sbjct: 94  VREDTETFLNRIVPEGSSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITNGKLNMGTWQG 153

Query: 181 LHGC 184
           +  C
Sbjct: 154 IWLC 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475211|ref|XP_003607891.1| hypothetical protein MTR_4g084120 [Medicago truncatula] gi|85719357|gb|ABC75362.1| Protein of unknown function UPF0047 [Medicago truncatula] gi|355508946|gb|AES90088.1| hypothetical protein MTR_4g084120 [Medicago truncatula]

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 105/128 (82%), Positives = 114/128 (89%)

Query: 57  MASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINEN 116
           MA+ P+WAQKT+ LPP +RGCHL+TPKI KEI QDLS FKCGLAHLFL HTSASLTINEN
Sbjct: 28  MATAPKWAQKTIALPPYKRGCHLVTPKIAKEIEQDLSGFKCGLAHLFLQHTSASLTINEN 87

Query: 117 YDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 176
           YD+DVRDDTETFLN+IVPEG SA WKHTLEG DDMPAHIKSSMFGC LTIPITDG+LNMG
Sbjct: 88  YDTDVRDDTETFLNRIVPEGPSAPWKHTLEGHDDMPAHIKSSMFGCALTIPITDGKLNMG 147

Query: 177 TWQELHGC 184
           TWQ +  C
Sbjct: 148 TWQGIWLC 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:505006137	217	AT1G21065 "AT1G21065" [Arabido	0.506	0.566	0.796	4.9e-53
FB|FBgn0263355	687	CG31688 [Drosophila melanogast	0.489	0.173	0.532	8.5e-32
UNIPROTKB|Q60BB8	139	MCA0559 "Putative uncharacteri	0.485	0.848	0.516	1.3e-29
UNIPROTKB|Q47W13	139	CPS_4360 "Putative uncharacter	0.485	0.848	0.491	4.4e-29
TIGR_CMR|CPS_4360	139	CPS_4360 "conserved hypothetic	0.485	0.848	0.491	4.4e-29
UNIPROTKB|Q9KUY5	139	VC_0373 "Putative uncharacteri	0.485	0.848	0.516	3.1e-28
TIGR_CMR|VC_0373	139	VC_0373 "conserved hypothetica	0.485	0.848	0.516	3.1e-28
UNIPROTKB|G4MUS6	210	MGG_01675 "Uncharacterized pro	0.600	0.695	0.434	5e-28
POMBASE|SPAC4A8.02c	142	SPAC4A8.02c "conserved protein	0.469	0.802	0.504	6.4e-28
CGD|CAL0001350	141	orf19.3016 [Candida albicans (	0.489	0.843	0.467	3.5e-27

TAIR|locus:505006137 AT1G21065 "AT1G21065" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 98/123 (79%), Positives = 111/123 (90%)

Query:    62 RWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDV 121
             +WAQKT+TLPPLRRGCHLITPKI+KEI +DLS+F CGLAH+FL HTSASLTINENYD DV
Sbjct:    77 KWAQKTITLPPLRRGCHLITPKILKEIREDLSDFNCGLAHVFLQHTSASLTINENYDPDV 136

Query:   122 RDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
             + DTETFLN+IVPEG SA W+HT+EGPDDMPAHIKSSMFGC LTIPIT G+L+MGTWQ +
Sbjct:   137 QADTETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKLSMGTWQGI 196

Query:   182 HGC 184
               C
Sbjct:   197 WLC 199

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

FB|FBgn0263355 CG31688 [Drosophila melanogaster (taxid:7227)]

 Score = 356 (130.4 bits), Expect = 8.5e-32, P = 8.5e-32
 Identities = 65/122 (53%), Positives = 90/122 (73%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q+ + L P  RG HL+T +I++++ + L+ F  GL H+ +LHTSASL +NE++D DVR
Sbjct:    37 WFQRKINLRPQHRGVHLVTEEILRQMPE-LAHFSVGLCHMQILHTSASLALNESWDPDVR 95

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
             DD E  LNKIVPEG    ++H+ EGPDDMPAH+K+   G +LTIPITDG+L++GTWQ + 
Sbjct:    96 DDMEMMLNKIVPEG--LPYRHSCEGPDDMPAHVKACFLGSSLTIPITDGKLSLGTWQGVW 153

Query:   183 GC 184
              C
Sbjct:   154 LC 155

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q60BB8 MCA0559 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 62/120 (51%), Positives = 86/120 (71%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W QKT+ L P  RG HL+T +I   + + L+ F+ G+AH F+ HTSASLTINEN D+DVR
Sbjct:     2 WFQKTIVLKPRSRGFHLVTAEITANLPE-LARFRQGIAHFFIQHTSASLTINENADADVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
              D E +L   VPE R+  ++HTLEG DDMPAHIK+ + G ++T+P+  G+L +GTWQ ++
Sbjct:    61 SDLEAYLLAQVPE-RAPYYRHTLEGDDDMPAHIKAVLVGNSVTVPLRQGRLALGTWQGIY 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q47W13 CPS_4360 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 59/120 (49%), Positives = 86/120 (71%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  +TL   +RG HLIT +++K++  +L++  CG+ HLF+ H+SAS+T+NEN D  VR
Sbjct:     2 WYQTEITLKARKRGFHLITDEVLKQL-HELNKVNCGILHLFIKHSSASITLNENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
              D E   N  VPE R+  ++HT EG DDMPAHIK+S+ G +L++PI+ GQLN+G WQ ++
Sbjct:    61 SDMEAHFNHFVPE-RAPYYQHTYEGDDDMPAHIKASLLGNSLSLPISHGQLNIGIWQGIY 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4360 CPS_4360 "conserved hypothetical protein TIGR00149" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 59/120 (49%), Positives = 86/120 (71%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  +TL   +RG HLIT +++K++  +L++  CG+ HLF+ H+SAS+T+NEN D  VR
Sbjct:     2 WYQTEITLKARKRGFHLITDEVLKQL-HELNKVNCGILHLFIKHSSASITLNENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
              D E   N  VPE R+  ++HT EG DDMPAHIK+S+ G +L++PI+ GQLN+G WQ ++
Sbjct:    61 SDMEAHFNHFVPE-RAPYYQHTYEGDDDMPAHIKASLLGNSLSLPISHGQLNIGIWQGIY 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KUY5 VC_0373 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 62/120 (51%), Positives = 80/120 (66%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q T+ L P  RG HLIT +I +++ Q +     GL HLF+ HTSASLTINEN D  VR
Sbjct:     2 WHQHTIQLRPRARGFHLITDEIEQQLPQ-IKRLNVGLLHLFVQHTSASLTINENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
              D E   N   PEG +  ++H  EG DDMPAHIKSS+ GC+++IPI  G+L +GTWQ ++
Sbjct:    61 QDMEAHFNHAAPEG-APYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGIY 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0373 VC_0373 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 62/120 (51%), Positives = 80/120 (66%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q T+ L P  RG HLIT +I +++ Q +     GL HLF+ HTSASLTINEN D  VR
Sbjct:     2 WHQHTIQLRPRARGFHLITDEIEQQLPQ-IKRLNVGLLHLFVQHTSASLTINENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
              D E   N   PEG +  ++H  EG DDMPAHIKSS+ GC+++IPI  G+L +GTWQ ++
Sbjct:    61 QDMEAHFNHAAPEG-APYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGIY 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MUS6 MGG_01675 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 66/152 (43%), Positives = 91/152 (59%)

Query:    32 ALFTKNPGSGTLKXXXXXXXXXXXXXXXXXRWAQKTVTLPPLRRGCHLITPKIVKEIAQD 91
             AL T N    T+                   W QK  TLP   RG +LIT  +VKEI + 
Sbjct:    36 ALLTGNLSRLTVSSSANRPSSYTSHPSAKMSWFQKQFTLPAKSRGSYLITDTVVKEIPE- 94

Query:    92 LSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP----EGRSASWKHTLEG 147
             +  +K GL +LF+ HTS +L++NEN+D DVR+D    L++I P    +G S  + H+ EG
Sbjct:    95 IKNYKVGLLNLFVQHTSCALSLNENWDEDVREDMSNALDRIAPAAGPKGESL-YLHSAEG 153

Query:   148 PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
             PDDMPAHIKS++ G ++TIPI++G+L  GTWQ
Sbjct:   154 PDDMPAHIKSALVGASVTIPISNGKLATGTWQ 185

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0045132 "meiotic chromosome segregation" evidence=ISS

POMBASE|SPAC4A8.02c SPAC4A8.02c "conserved protein, UPF0047 family" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 59/117 (50%), Positives = 86/117 (73%)

Query:    65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
             Q+ +TL    +G ++IT  +VK++ + L  F  G  + F+ HTSA+LTINEN+D+D R D
Sbjct:     5 QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 63

Query:   125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
                 L+KIVPE  SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ++
Sbjct:    64 MNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDI 118

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0045132 "meiotic chromosome segregation" evidence=IMP

CGD|CAL0001350 orf19.3016 [Candida albicans (taxid:5476)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 57/122 (46%), Positives = 85/122 (69%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q   TL P  +GC+LIT  +++ + Q + +++ G+ +LFL HTSA+L+INEN+D DVR
Sbjct:     3 WDQTKFTLSPKSKGCYLITDDVIRSVPQ-IKDYEMGILNLFLQHTSAALSINENWDPDVR 61

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
              D +  L++I PEG    + H  EGPDD  +HIKSS  G +L+IPIT+G+L++G WQ ++
Sbjct:    62 TDLDKSLDRIAPEGDF--YLHDAEGPDDSVSHIKSSTIGVSLSIPITNGKLSLGQWQGIY 119

Query:   183 GC 184
              C
Sbjct:   120 LC 121

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0045132 "meiotic chromosome segregation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
pfam01894	118	pfam01894, UPF0047, Uncharacterized protein family	7e-49
COG0432	137	COG0432, COG0432, Uncharacterized conserved protei	2e-43
TIGR00149	132	TIGR00149, TIGR00149_YjbQ, secondary thiamine-phos	1e-32

>gnl|CDD|216769 pfam01894, UPF0047, Uncharacterized protein family UPF0047

 Score =  156 bits (396), Expect = 7e-49
 Identities = 53/102 (51%), Positives = 75/102 (73%), Gaps = 4/102 (3%)

Query: 78  HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGR 137
             IT ++ + + +  S  K GL H+F+ HT+ASLTINEN D DVR+D E FLN++VPE  
Sbjct: 1   IDITDEVREAVEE--SGVKNGLVHVFVPHTTASLTINENADPDVREDLERFLNRLVPED- 57

Query: 138 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
              ++H  EGPD+MPAH+KSS+ G +LT+P+T+G+L +GTWQ
Sbjct: 58  -DPYRHNEEGPDNMPAHLKSSLLGPSLTVPVTNGRLALGTWQ 98

This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important. Length = 118

>gnl|CDD|223509 COG0432, COG0432, Uncharacterized conserved protein [Function unknown]

 Score =  142 bits (361), Expect = 2e-43
 Identities = 52/122 (42%), Positives = 80/122 (65%), Gaps = 6/122 (4%)

Query: 61  PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDS 119
            +  QK +T+   RR     IT ++ K + +  S  K GL  +F+ HT+A+LTINE  + 
Sbjct: 1   MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINEA-EP 57

Query: 120 DVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            +++D E FL K+VPEG  A ++H  EGPD+ PAH+K+S+ G +LTIP+ +G+L +GTWQ
Sbjct: 58  GLKEDIERFLEKLVPEG--AGYRHDEEGPDNAPAHLKASLLGPSLTIPVINGRLVLGTWQ 115

Query: 180 EL 181
            +
Sbjct: 116 GI 117

Length = 137

>gnl|CDD|129253 TIGR00149, TIGR00149_YjbQ, secondary thiamine-phosphate synthase enzyme

 Score =  115 bits (289), Expect = 1e-32
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           Q+ +     R     IT +I   +    S  K GL  +++ HT+ASLTINEN D DV  D
Sbjct: 1   QELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHD 58

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            E F  ++VP+    +++H  EG D+M AHIKSS+ G +  +P+ +G+L +GTWQ
Sbjct: 59  IERFFERLVPDD--GNYEHD-EGDDNMDAHIKSSLLGTSQHVPVENGRLQLGTWQ 110

Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown [Unknown function, Enzymes of unknown specificity]. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
COG0432	137	Uncharacterized conserved protein [Function unknow	100.0
TIGR00149	132	TIGR00149_YbjQ secondary thiamine-phosphate syntha	100.0
PF01894	118	UPF0047: Uncharacterised protein family UPF0047; I	100.0
KOG3267	138	consensus Uncharacterized conserved protein [Funct	100.0

>COG0432 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.8e-51  Score=339.65  Aligned_cols=124  Identities=41%  Similarity=0.656  Sum_probs=120.5

Q ss_pred             CeEEEEEEEecCCCC-eEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCC
Q 026094           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (243)
Q Consensus        61 M~v~~~tItV~T~~r-g~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~  139 (243)
                      |+|+|++|+|+|+++ +++|||++|+++|++  |||++|+|+||++||||||+||| +||+|++||+++|++|+|++.  
T Consensus         1 m~~~~~~l~v~T~~r~~~vdIT~ev~~~v~e--sgv~~Gl~~vf~~HtTaal~inE-~ep~l~~Di~~~l~~lvP~~~--   75 (137)
T COG0432           1 MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINE-AEPGLKEDIERFLEKLVPEGA--   75 (137)
T ss_pred             CceEEEEEEEeccCccceEEchHHHHHHHHH--cCCccceEEEEecCcceEEEEec-CCCcHHHHHHHHHHHhCCCCC--
Confidence            789999999999987 999999999999998  99999999999999999999999 699999999999999999985  


Q ss_pred             CceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT  189 (243)
Q Consensus       140 ~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~  189 (243)
                      .|+|+.+|+|||+|||||+|+|+|++|||.||||.|||||+|||+|||+.
T Consensus        76 ~Y~H~~~~~Dn~~aHlkasllG~S~~iPv~~GrL~LGTWQ~I~~~E~dg~  125 (137)
T COG0432          76 GYRHDEEGPDNAPAHLKASLLGPSLTIPVINGRLVLGTWQGIFLVEFDGP  125 (137)
T ss_pred             CcccccCCCCchHHHHHHHhcCceEEEEEeCCeEceecccEEEEEEecCC
Confidence            69999999999999999999999999999999999999999999999975

>TIGR00149 TIGR00149_YbjQ secondary thiamine-phosphate synthase enzyme

Probab=100.00  E-value=5.9e-47  Score=311.92  Aligned_cols=118  Identities=38%  Similarity=0.597  Sum_probs=111.7

Q ss_pred             EEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCceeCc
Q 026094           67 TVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL  145 (243)
Q Consensus        67 tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~H~~  145 (243)
                      +|++.|.+ ++++|||++|+++|++  ||+++|+|+||++||||||+||||+||+|+.||+++|+||+|++.  +|+|+ 
T Consensus         2 ~~~~~t~~~~~~~dIT~~V~~~v~~--s~i~~G~~~v~~~HTTa~l~inE~~dp~l~~Dl~~~l~~lvP~~~--~y~H~-   76 (132)
T TIGR00149         2 ELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHDIERFFERLVPDDG--NYEHD-   76 (132)
T ss_pred             EEEEEcCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEecCCCccHHHHHHHHHHHHCCCCC--Ccccc-
Confidence            46777765 6999999999999998  999999999999999999999999999999999999999999874  69998 


Q ss_pred             cCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094          146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT  189 (243)
Q Consensus       146 eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~  189 (243)
                      +++|||+|||||+|+|+|++|||.||+|.||+||+|||||||+.
T Consensus        77 ~~~~n~~aHlka~L~G~s~tipi~dG~L~LGtwQ~I~l~E~Dg~  120 (132)
T TIGR00149        77 EGDDNMDAHIKSSLLGTSQHVPVENGRLQLGTWQGIFFAEFDGP  120 (132)
T ss_pred             CCCCCHHHHHHHHhcCccEEEEEeCCEEcccCccEEEEEECCCC
Confidence            88999999999999999999999999999999999999999975

Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown.

>PF01894 UPF0047: Uncharacterised protein family UPF0047; InterPro: IPR001602 This family contains small uncharacterised proteins of 14 to 16 kDa mainly from bacteria although the signatures also occur in a hypothetical protein from archaea and from yeast

Probab=100.00  E-value=3.3e-46  Score=302.30  Aligned_cols=107  Identities=44%  Similarity=0.724  Sum_probs=95.0

Q ss_pred             EeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCceeCccCCCCchhhhhh
Q 026094           78 HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS  157 (243)
Q Consensus        78 ~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~H~~eG~DN~~AHLKS  157 (243)
                      ||||++|+++|++  ||+++|+|+||++||||||+||||+||+|++||+++|+||+|++.  +|+|+.+|+|||+||+||
T Consensus         1 idIT~~V~~~v~~--s~i~~Gl~~v~~~HTTaal~inE~~dp~v~~Dl~~~l~~lvP~~~--~y~H~~~~~~n~~aHlks   76 (118)
T PF01894_consen    1 IDITEEVREAVEE--SGIRNGLVHVFVPHTTAALTINENADPDVRRDLLEALERLVPEDD--PYRHNEEGPDNAPAHLKS   76 (118)
T ss_dssp             EE-HHHHHHHHHH--HT-SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHS-TTS--T-GGGCTT-STHHHHHHH
T ss_pred             CcchHHHHHHHHH--hCCcceEEEEEeCCCeEEEEEeecCChhHHHhHHHHHHHhCCCCC--ceEeCCccccCccHHHHH
Confidence            7999999999998  999999999999999999999999999999999999999999984  799999999999999999


Q ss_pred             hccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094          158 SMFGCTLTIPITDGQLNMGTWQELHGCMLLL  188 (243)
Q Consensus       158 sLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~  188 (243)
                      +|+|+|++|||.||+|.||+||+|||+|||+
T Consensus        77 ~l~G~S~~vpv~~G~L~LGtwQ~I~l~E~dg  107 (118)
T PF01894_consen   77 SLIGPSLTVPVHDGKLALGTWQGIYLVEFDG  107 (118)
T ss_dssp             HHH-SEEEEEEETTEE---TTEEEEEEESS-
T ss_pred             HhcCCeEEEEEECCEEccCCcCEEEEEECCC
Confidence            9999999999999999999999999999998

; PDB: 1VPH_E 2P6C_A 2CU5_A 1VMJ_A 1XBF_B 1VMH_A 1VE0_A 2P6H_B 1VMF_C.

>KOG3267 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.9e-41  Score=276.02  Aligned_cols=126  Identities=63%  Similarity=1.099  Sum_probs=120.9

Q ss_pred             EEEEEecCCCCeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCceeC
Q 026094           65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT  144 (243)
Q Consensus        65 ~~tItV~T~~rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~H~  144 (243)
                      |++|++...++||+.||+++.+.++++.+.+..|++++|.+||+|+|+||||+||+++.|++.+|+|+||++.+.+|+|.
T Consensus         1 qk~itl~~~~kg~~iit~~ilkeir~dl~~fn~g~~~~fiqhtsaaltinen~d~d~qad~~~~ldkivpe~nsa~~rht   80 (138)
T KOG3267|consen    1 QKIITLDPLRKGCHIITNDILKEIREDLKDFNCGLAHFFIQHTSAALTINENWDADTQADMEDFLDKIVPEGNSAGWRHT   80 (138)
T ss_pred             CceEecCcccCccEEecHHHHHHHHHHHhhccccceeeeeeccceeeEecccCCcchhhhHHHHHHhhCcCCCCcccccc
Confidence            57899998889999999999999988889999999999999999999999999999999999999999999876799999


Q ss_pred             ccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecccc
Q 026094          145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLTS  190 (243)
Q Consensus       145 ~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~~  190 (243)
                      .||+||||||+||+|+|+++||||.+|||.|||||+|+|+|||...
T Consensus        81 ~eg~ddmpahikssl~g~qltipit~gklslgtwq~i~l~e~r~~p  126 (138)
T KOG3267|consen   81 AEGLDDMPAHIKSSLFGCQLTIPITKGKLSLGTWQDIQLAEFRDAP  126 (138)
T ss_pred             ccCcccchhhhhhccccceEEEEeccCeecccccccchhhhhhcCC
Confidence            9999999999999999999999999999999999999999999763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
1vmh_A	144	Crystal Structure Of An Uncharacterized Conserved P		1e-11
1xbf_A	140	X-Ray Structure Northeast Structural Genomics Conso		4e-11
1vmf_A	145	Crystal Structure Of A Ybjq-Like Fold Protein Of Un		3e-09
1vmj_A	151	Crystal Structure Of A Putative Thiamin Phosphate S		6e-09
2p6c_A	137	Crystal Structure Of Hypothetical Protein Aq_2013 F		6e-08
1ve0_A	134	Crystal Structure Of Uncharacterized Protein St2072		1e-07
1vph_A	149	Crystal Structure Of A Ybjq-Like Protein Of Unknown		4e-06
2p6h_A	134	Crystal Structure Of Hypothetical Protein Ape1520 F		5e-06
2cu5_A	129	Crystal Structure Of The Conserved Hypothetical Pro		2e-04

>pdb|1VMH|A Chain A, Crystal Structure Of An Uncharacterized Conserved Protein YjbqUPF0047 Family, Ortholog Yugu B.Subtilis (Ca_c0907) From Clostridium Acetobutylicum At 1.31 A Resolution Length = 144

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 89  AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGP 148
           A D S    G+A +F  HT+A +TINEN D DV  D    L+K+ P  +   +KH +EG 
Sbjct: 39  AVDESGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFP--KVGDYKH-VEG- 94
Query: 149 DDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
            +  AHIK+S+ G +  I I +G+L +GTWQ ++
Sbjct: 95  -NSHAHIKASLMGSSQQIIIENGKLKLGTWQGIY 127

>pdb|1XBF|A Chain A, X-Ray Structure Northeast Structural Genomics Consortium Target Car10 From C. Acetobutylicum Length = 140

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 89  AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGP 148
           A D S    G A +F  HT+A +TINEN D DV  D    L+K+ P  +   +KH +EG 
Sbjct: 27  AVDESGVSDGXAVVFCPHTTAGITINENADPDVTRDILVNLDKVFP--KVGDYKH-VEG- 82
Query: 149 DDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
            +  AHIK+S+ G +  I I +G+L +GTWQ ++
Sbjct: 83  -NSHAHIKASLXGSSQQIIIENGKLKLGTWQGIY 115

>pdb|1VMF|A Chain A, Crystal Structure Of A Ybjq-Like Fold Protein Of Unknown Function (Bh3498) From Bacillus Halodurans At 1.46 A Resolution Length = 145

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 12/91 (13%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT----LEGPDDMPA 153
           G+A +  LHT+A +T+NEN D DV+ D    L+++ P      W H     +EG  +  A
Sbjct: 45  GVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYP------WHHENDRHMEG--NTAA 96
Query: 154 HIKSSMFGCTLTIPITDGQLNMGTWQELHGC 184
           H+K+S  G   T+ I++G+L +GTWQ ++ C
Sbjct: 97  HLKTSTVGHAQTLIISEGRLVLGTWQGVYFC 127

>pdb|1VMJ|A Chain A, Crystal Structure Of A Putative Thiamin Phosphate Synthase (Tm0723) From Thermotoga Maritima Msb8 At 1.52 A Resolution Length = 151

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           RR    ITP +++E  ++ S  K GL     +H +AS+ IN++ +  +  D E +L K+ 
Sbjct: 27  RREFINITP-LLEECVRE-SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLA 83
Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
           PE   + +KH   G D+  AH+K ++ G  + I ITD ++++G W+++
Sbjct: 84  PEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQV 131

>pdb|2P6C|A Chain A, Crystal Structure Of Hypothetical Protein Aq_2013 From Aquifex Aeolicus Vf5. Length = 137

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           RR    IT ++ K + +  SE K GL  +  +H ++S+ I ++ +  + +D   +L K+ 
Sbjct: 15  RRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLA 71
Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
           P      +KH   G D+  AH+K+ +    + +PIT+G+L++G WQE+
Sbjct: 72  P--YRPDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEI 117

>pdb|1VE0|A Chain A, Crystal Structure Of Uncharacterized Protein St2072 From Sulfolobus Tokodaii Length = 134

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
           I +++++ +     G+AH+ + HT+ ++ INE  +S +  D   +  K+VP      ++H
Sbjct: 21  ITEQVSEAIKGINNGIAHVIVKHTTCAIIINE-AESGLXKDFLNWAKKLVPP--DGEFEH 77
Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
            +   ++  AH+ S++ G +  +PI +G+L++GTWQ +
Sbjct: 78  NII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRI 114

>pdb|1VPH|A Chain A, Crystal Structure Of A Ybjq-Like Protein Of Unknown Function (Sso2532) From Sulfolobus Solfataricus P2 At 1.76 A Resolution Length = 149

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 85  VKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT 144
           V++I +  S  K G+  +F+ H++A++  NE ++  + +D  T + +     RS  WKH 
Sbjct: 37  VEQIVEK-SGIKNGICLIFVAHSTAAIVANE-HERGLMEDILTKIKEFTEPSRS--WKHN 92
Query: 145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 181
           L   D+  AH+ ++  G     P+ +G+L  GTWQ +
Sbjct: 93  L-IDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNI 128

>pdb|2P6H|A Chain A, Crystal Structure Of Hypothetical Protein Ape1520 From Aeropyrum Pernix K1 Length = 134

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
           GL  +++ HT+A++ +NE  +  + +D   F+ ++   G    WKH L   +   AH+ +
Sbjct: 35  GLLVVYVPHTTAAVAVNE-AEPRLMEDIVEFIRELTKPG--GPWKHNLVDVNAH-AHLGN 90
Query: 158 SMFGCTLTIPITDGQLNMGTWQEL 181
           ++ G +  IP+  G+L++GTWQ +
Sbjct: 91  TIIGDSRVIPVVGGRLSLGTWQRI 114

>pdb|2CU5|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1486 From Thermus Thermophilus Hb8 Length = 129

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
           GL +LF+ HT+  LT+ E  D  V  D    L ++ P  R    +H LEG  +  AH+KS
Sbjct: 32  GLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRPQD-RH-LEG--NSHAHLKS 87
Query: 158 SMFGCTLTIPITDGQLNMGTWQEL 181
            + G  L +    G+L +G WQ++
Sbjct: 88  LLTGVHLLLLAEKGRLRLGRWQQV 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1vmj_A	151	Hypothetical protein TM0723; putative thiamin phos	3e-29
2p6c_A	137	AQ_2013 protein; NPPSFA, national project on prote	6e-28
1vmf_A	145	Hypothetical protein; structural genomics, joint c	2e-27
2cu5_A	129	Conserved hypothetical protein TT1486; thermus the	3e-26
1vmh_A	144	Uncharacterized conserved protein YJBQ/UPF0047 FA	2e-25
1ve0_A	134	Hypothetical protein (ST2072); structural genomics	3e-24
1vph_A	149	Hypothetical protein SSO2532; YBJQ-like fold, stru	4e-22
2p6h_A	134	Hypothetical protein; structural genomics, unknown	7e-22

>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1 Length = 151

 Score =  106 bits (266), Expect = 3e-29
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 51  NPNPNPMASNPRWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSA 109
           + + + M    +  +K +      RR    ITP + + + +  S  K GL     +H +A
Sbjct: 7   HHHHHHM----KSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITA 60

Query: 110 SLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPIT 169
           S+ IN+  +  +  D E +L K+ PE   + +KH   G D+  AH+K ++ G  + I IT
Sbjct: 61  SVFIND-DEPGLHHDFEVWLEKLAPEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAIT 119

Query: 170 DGQLNMGTWQELHGC 184
           D ++++G W+++   
Sbjct: 120 DRKMDLGPWEQVFYG 134

>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus} Length = 137

 Score =  102 bits (256), Expect = 6e-28
 Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 6/124 (4%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +   K +T     RR    IT ++ K + +  SE K GL  +  +H ++S+ I ++ +  
Sbjct: 2   KAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDDEE-G 58

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQE 180
           + +D   +L K+ P      +KH   G D+  AH+K+ +    + +PIT+G+L++G WQE
Sbjct: 59  LHEDIWEWLEKLAPYR--PDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQE 116

Query: 181 LHGC 184
           +   
Sbjct: 117 IFYA 120

>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1 Length = 145

 Score =  101 bits (253), Expect = 2e-27
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)

Query: 60  NPRWAQKTVTLPPLRRGC-HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYD 118
           +     KT  L    R     IT +I   I +  +    G+A +  LHT+A +T+NEN D
Sbjct: 8   HHHHHMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENAD 65

Query: 119 SDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTW 178
            DV+ D    L+++ P       ++      +  AH+K+S  G   T+ I++G+L +GTW
Sbjct: 66  PDVKRDMIMRLDEVYPW----HHENDRHMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTW 121

Query: 179 QELHGC 184
           Q ++ C
Sbjct: 122 QGVYFC 127

>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus} Length = 129

 Score = 98.2 bits (244), Expect = 3e-26
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
                + +P    G   IT K+   ++        GL +LF+ HT+  LT+ E  D  V 
Sbjct: 2   EGVVRLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVA 56

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELH 182
            D    L ++ P               +  AH+KS + G  L +    G+L +G WQ++ 
Sbjct: 57  QDLLGRLAELAPR----HRPQDRHLEGNSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVF 112

Query: 183 GC 184
             
Sbjct: 113 LA 114

>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A Length = 144

 Score = 96.7 bits (240), Expect = 2e-25
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 7/111 (6%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
                 IT  + K + +  S    G+A +F  HT+A +TINEN D DV  D    L+K+ 
Sbjct: 26  DDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVF 83

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGC 184
           P+              +  AHIK+S+ G +  I I +G+L +GTWQ ++  
Sbjct: 84  PK-----VGDYKHVEGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFT 129

>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii} Length = 134

 Score = 93.3 bits (231), Expect = 3e-24
 Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 62  RWAQKTVTLPPLRRGCHL-ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +   K  T+    R   + IT     ++++ +     G+AH+ + HT+ ++ INE     
Sbjct: 2   KIISKEFTVKTRSRFDSIDITE----QVSEAIKGINNGIAHVIVKHTTCAIIINEAESGL 57

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQE 180
           ++D        + P+G    ++H +   ++  AH+ S++ G +  +PI +G+L++GTWQ 
Sbjct: 58  MKDFLNWAKKLVPPDGE---FEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQR 113

Query: 181 LHGC 184
           +   
Sbjct: 114 IILL 117

>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1 Length = 149

 Score = 87.9 bits (217), Expect = 4e-22
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +     + +    +     IT ++ + + +  S  K G+  +F+ H++A++  NE+    
Sbjct: 14  KVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEHERGL 71

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQE 180
           + D          P      WKH L   D+  AH+ ++  G     P+ +G+L  GTWQ 
Sbjct: 72  MEDILTKIKEFTEPSRS---WKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQN 127

Query: 181 LHGC 184
           +   
Sbjct: 128 IFLV 131

>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix} Length = 134

 Score = 87.1 bits (215), Expect = 7e-22
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 65  QKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
             + T+    R     +T K+ + ++        GL  +++ HT+A++ +NE  +  + +
Sbjct: 3   TGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNE-AEPRLME 59

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHG 183
           D   F+ ++   G             +  AH+ +++ G +  IP+  G+L++GTWQ +  
Sbjct: 60  DIVEFIRELTKPGGPWKHNLV---DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILF 116

Query: 184 C 184
            
Sbjct: 117 V 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
2p6c_A	137	AQ_2013 protein; NPPSFA, national project on prote	100.0
1vmj_A	151	Hypothetical protein TM0723; putative thiamin phos	100.0
1vph_A	149	Hypothetical protein SSO2532; YBJQ-like fold, stru	100.0
2p6h_A	134	Hypothetical protein; structural genomics, unknown	100.0
1ve0_A	134	Hypothetical protein (ST2072); structural genomics	100.0
1vmf_A	145	Hypothetical protein; structural genomics, joint c	100.0
1vmh_A	144	Uncharacterized conserved protein YJBQ/UPF0047 FA	100.0
2cu5_A	129	Conserved hypothetical protein TT1486; thermus the	100.0

>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus}

Probab=100.00  E-value=8.1e-52  Score=341.38  Aligned_cols=124  Identities=27%  Similarity=0.442  Sum_probs=120.0

Q ss_pred             CeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCC
Q 026094           61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (243)
Q Consensus        61 M~v~~~tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~  139 (243)
                      |++++++|+|+|++ ++++|||++|+++|++  +|+++|+|+||++||||||+|||| ||+|++||+++|+||||++.  
T Consensus         1 M~~~~~~i~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~--   75 (137)
T 2p6c_A            1 MKAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLAPYRP--   75 (137)
T ss_dssp             CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HTCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCT--
T ss_pred             CcEEEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHHCCCCC--
Confidence            89999999999986 7999999999999997  999999999999999999999999 99999999999999999984  


Q ss_pred             CceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT  189 (243)
Q Consensus       140 ~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~  189 (243)
                      +|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+|||||||+.
T Consensus        76 ~y~H~~eg~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg~  125 (137)
T 2p6c_A           76 DYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFDGQ  125 (137)
T ss_dssp             TCGGGGGTCCCHHHHHHHHHHCSEEEEEECSSSBCCCSSCEEEEEESSCS
T ss_pred             CcccCcCCCCCHHHhhhhheeCCeEEEEEECCEECcCCCceEEEEECCCC
Confidence            69999999999999999999999999999999999999999999999953

>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1

Probab=100.00  E-value=5.1e-50  Score=335.99  Aligned_cols=126  Identities=28%  Similarity=0.436  Sum_probs=119.3

Q ss_pred             CCeEEEEEEEecCC-CCeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCC
Q 026094           60 NPRWAQKTVTLPPL-RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS  138 (243)
Q Consensus        60 ~M~v~~~tItV~T~-~rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~  138 (243)
                      -|+-|+++|+|+|. +++++|||++|+++|++  +|+++|+|+||++||||||+|||| ||+|++||+++|+||||++..
T Consensus        12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-dp~v~~Dl~~~l~rlvP~~~~   88 (151)
T 1vmj_A           12 HMKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPY   88 (151)
T ss_dssp             -CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCG
T ss_pred             hhhceEEEEEEECCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEEcC-CccHHHHHHHHHHHhCCCCCC
Confidence            48999999999996 47999999999999997  999999999999999999999999 999999999999999998741


Q ss_pred             CCceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094          139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL  188 (243)
Q Consensus       139 ~~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~  188 (243)
                      ..|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus        89 ~~y~H~~eg~dn~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dg  138 (151)
T 1vmj_A           89 SQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDG  138 (151)
T ss_dssp             GGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSC
T ss_pred             CCcEecCcCCCchHhhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCC
Confidence            16999999999999999999999999999999999999999999999985

>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1

Probab=100.00  E-value=5.6e-50  Score=335.20  Aligned_cols=124  Identities=25%  Similarity=0.424  Sum_probs=119.6

Q ss_pred             CCeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCC
Q 026094           60 NPRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS  138 (243)
Q Consensus        60 ~M~v~~~tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~  138 (243)
                      -|++|+++|+|+|++ ++++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|++||+++|+||||+++ 
T Consensus        12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-Dp~v~~Dl~~~l~rlvP~~~-   87 (149)
T 1vph_A           12 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPSR-   87 (149)
T ss_dssp             CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS-
T ss_pred             eeeEEEEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHhCCCCC-
Confidence            499999999999987 7999999999999997  999999999999999999999999 99999999999999999984 


Q ss_pred             CCceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094          139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT  189 (243)
Q Consensus       139 ~~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~  189 (243)
                       +|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||||+.
T Consensus        88 -~y~H~~e-~dn~~AHiKssL~G~S~tiPV~~G~L~LGtWQgIyl~E~dg~  136 (149)
T 1vph_A           88 -SWKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGP  136 (149)
T ss_dssp             -CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCC
T ss_pred             -CccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCCC
Confidence             6999988 999999999999999999999999999999999999999964

>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix}

Probab=100.00  E-value=8.4e-50  Score=328.34  Aligned_cols=120  Identities=25%  Similarity=0.431  Sum_probs=115.4

Q ss_pred             EEEEEEEecCCCC-eEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCc
Q 026094           63 WAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW  141 (243)
Q Consensus        63 v~~~tItV~T~~r-g~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y  141 (243)
                      ++|++|+|+|+++ +++|||++|+++|++  +|+++|+|+||++||||||+|||| ||+|++||+++|+||+|++.  +|
T Consensus         1 ~~~~~i~~~t~~r~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasltinEn-dp~v~~Dl~~~l~~lvP~~~--~y   75 (134)
T 2p6h_A            1 METGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFIRELTKPGG--PW   75 (134)
T ss_dssp             CEEEEEEEECCSSSEEEECHHHHHHHHHT--TTCCSEEEEEECCCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS--SC
T ss_pred             CeEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHhCCCCC--Cc
Confidence            3789999999874 999999999999997  999999999999999999999999 99999999999999999974  69


Q ss_pred             eeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094          142 KHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL  188 (243)
Q Consensus       142 ~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~  188 (243)
                      +|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus        76 ~H~~e-~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg  121 (134)
T 2p6h_A           76 KHNLV-DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEMDG  121 (134)
T ss_dssp             GGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSC
T ss_pred             cccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCceEEEEECCC
Confidence            99999 99999999999999999999999999999999999999985

>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.7e-49  Score=326.55  Aligned_cols=120  Identities=27%  Similarity=0.452  Sum_probs=115.7

Q ss_pred             CeEEEEEEEecCCCC-eEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCC
Q 026094           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (243)
Q Consensus        61 M~v~~~tItV~T~~r-g~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~  139 (243)
                      |++++++|+|+|+++ +++|||++|+++|+    |+++|+|+||++||||||+|||| ||+|++||+++|+||+|++.  
T Consensus         1 M~~~~~~i~~~t~~r~~~~dIT~~V~~~v~----gi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~--   73 (134)
T 1ve0_A            1 MKIISKEFTVKTRSRFDSIDITEQVSEAIK----GINNGIAHVIVKHTTCAIIINEA-ESGLMKDFLNWAKKLVPPDG--   73 (134)
T ss_dssp             CEEEEEEEEEECCSSSEEEECHHHHHHHTT----TCSSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHSCTTS--
T ss_pred             CcEEEEEEEEecCCCCeEEEChHHHHHHhc----ccCceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHHCCCCC--
Confidence            889999999999874 99999999999995    89999999999999999999999 99999999999999999974  


Q ss_pred             CceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL  188 (243)
Q Consensus       140 ~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~  188 (243)
                      +|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus        74 ~y~H~~e-~dn~~AHiks~l~G~s~tipV~~G~L~LGtWQ~Iyl~E~dg  121 (134)
T 1ve0_A           74 EFEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEFDG  121 (134)
T ss_dssp             CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSC
T ss_pred             CccccCC-CCChHHhhhhhccCCcEEEEEECCEeccCCCcEEEEEECCC
Confidence            6999999 99999999999999999999999999999999999999985

>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1

Probab=100.00  E-value=1e-47  Score=320.37  Aligned_cols=119  Identities=34%  Similarity=0.452  Sum_probs=112.1

Q ss_pred             EEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCce
Q 026094           64 AQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK  142 (243)
Q Consensus        64 ~~~tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~  142 (243)
                      +.++|+|.|.+ ++++|||++|+++|++  +||++|+|+||++||||||+||||+||+|++||+++|+||||++. .+|+
T Consensus        12 ~~~~l~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~-~~y~   88 (145)
T 1vmf_A           12 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH-ENDR   88 (145)
T ss_dssp             CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC-TTCC
T ss_pred             ceeEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhcCCCC-CCcC
Confidence            46899999986 6999999999999997  999999999999999999999999999999999999999999874 2699


Q ss_pred             eCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094          143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL  188 (243)
Q Consensus       143 H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~  188 (243)
                      | .||  ||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus        89 H-~EG--n~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dg  131 (145)
T 1vmf_A           89 H-MEG--NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDG  131 (145)
T ss_dssp             C-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSC
T ss_pred             c-CCC--CHHHHHHHHhhCCeEEEEEECCEEccCCCceEEEEECcC
Confidence            9 455  999999999999999999999999999999999999995

>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A

Probab=100.00  E-value=8.6e-48  Score=320.47  Aligned_cols=116  Identities=34%  Similarity=0.445  Sum_probs=111.3

Q ss_pred             EEEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCceeC
Q 026094           66 KTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT  144 (243)
Q Consensus        66 ~tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~H~  144 (243)
                      ++|+|+|.+ ++++|||++|+++|++  +|+++|+|+||++||||||+||||+||+|++||+++|+||||++.  +|+|+
T Consensus        17 ~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~--~y~H~   92 (144)
T 1vmh_A           17 IEYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVG--DYKHV   92 (144)
T ss_dssp             CEEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSSS--SCCCT
T ss_pred             EEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC--CcccC
Confidence            579999985 7999999999999997  999999999999999999999999999999999999999999974  69997


Q ss_pred             ccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094          145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL  188 (243)
Q Consensus       145 ~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~  188 (243)
                         +|||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus        93 ---~dn~~AHikssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dg  133 (144)
T 1vmh_A           93 ---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDG  133 (144)
T ss_dssp             ---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSC
T ss_pred             ---CCCchHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCC
Confidence               78999999999999999999999999999999999999985

>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}

Probab=100.00  E-value=4.2e-46  Score=305.14  Aligned_cols=112  Identities=30%  Similarity=0.462  Sum_probs=104.7

Q ss_pred             EEEecCCCCeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCC-CCCCceeCc
Q 026094           67 TVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEG-RSASWKHTL  145 (243)
Q Consensus        67 tItV~T~~rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~-~~~~Y~H~~  145 (243)
                      +|+|++++++++|||++|+++|++     ++|+|+||++||||||+||||+||+|++||+++|+||+|++ .  +|+| .
T Consensus         6 ~i~~~~~~~~~~dIT~~V~~~v~~-----~~Gl~~vf~~HTTasltinEnadp~v~~Dl~~~l~~lvP~~~~--~y~H-~   77 (129)
T 2cu5_A            6 RLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRP--QDRH-L   77 (129)
T ss_dssp             EEEEEECSSEEEECHHHHHHTSTT-----CCEEEEEECCCSSEEEEEECCSSHHHHHHHHHHHHHHSCSCCT--TCCC-T
T ss_pred             EEEEeCCCCeEEECHHHHHHHhhh-----cCcEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCCC--CcCc-C
Confidence            577886668999999999999962     99999999999999999999999999999999999999987 4  5999 4


Q ss_pred             cCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEecc
Q 026094          146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLL  188 (243)
Q Consensus       146 eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~  188 (243)
                      ||  ||+|||||+|+|+|++|||.||+|.|||||+|||||||+
T Consensus        78 eG--n~~AHiks~L~G~s~tiPV~~G~L~LGtWQ~Iyl~E~dg  118 (129)
T 2cu5_A           78 EG--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDG  118 (129)
T ss_dssp             TS--CHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSC
T ss_pred             CC--CHHHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCC
Confidence            55  999999999999999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1vmja_	139	d.273.1.1 (A:) Hypothetical protein TM0723 {Thermo	9e-36
d1vmfa_	136	d.273.1.1 (A:) Hypothetical protein BH3498 {Bacill	2e-32
d1vmha_	129	d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Cl	1e-31
d1vpha_	138	d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfo	5e-28

>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]} Length = 139

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein TM0723
species: Thermotoga maritima [TaxId: 2336]

 Score =  121 bits (306), Expect = 9e-36
 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +  +K +      RR    ITP + + + +  S  K GL     +H +AS+ IN++    
Sbjct: 2   KSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDDEP-G 58

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQE 180
           +  D E +L K+ PE   + +KH   G D+  AH+K ++ G  + I ITD ++++G W++
Sbjct: 59  LHHDFEVWLEKLAPEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQ 118

Query: 181 LHGC 184
           +   
Sbjct: 119 VFYG 122

>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]} Length = 136

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein BH3498
species: Bacillus halodurans [TaxId: 86665]

 Score =  113 bits (283), Expect = 2e-32
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 65  QKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
            KT  L    R     IT +I   I +  +    G+A +  LHT+A +T+NEN D DV+ 
Sbjct: 4   MKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKR 61

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHG 183
           D    L+++ P       ++      +  AH+K+S  G   T+ I++G+L +GTWQ ++ 
Sbjct: 62  DMIMRLDEVYPW----HHENDRHMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYF 117

Query: 184 C 184
           C
Sbjct: 118 C 118

>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]} Length = 129

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: B.subtilis YugU ortolog CAC0907
species: Clostridium acetobutylicum [TaxId: 1488]

 Score =  110 bits (277), Expect = 1e-31
 Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 7/111 (6%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
                 IT  + K + +  S    G+A +F  HT+A +TINEN D DV  D    L+K+ 
Sbjct: 11  DDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVF 68

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGC 184
           P+     +KH      +  AHIK+S+ G +  I I +G+L +GTWQ ++  
Sbjct: 69  PKV--GDYKHV---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFT 114

>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus solfataricus [TaxId: 2287]} Length = 138

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein SSO2532
species: Sulfolobus solfataricus [TaxId: 2287]

 Score =  101 bits (254), Expect = 5e-28
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           +     IT ++ + + +  S  K G+  +F+ H++A++  NE+    + D     L KI 
Sbjct: 16  QFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEHERGLMED----ILTKIK 69

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGC 184
                +         D+  AH+ ++  G     P+ +G+L  GTWQ +   
Sbjct: 70  EFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLV 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1vmja_	139	Hypothetical protein TM0723 {Thermotoga maritima [	100.0
d1vmfa_	136	Hypothetical protein BH3498 {Bacillus halodurans [	100.0
d1vpha_	138	Hypothetical protein SSO2532 {Sulfolobus solfatari	100.0
d1vmha_	129	B.subtilis YugU ortolog CAC0907 {Clostridium aceto	100.0

>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein TM0723
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.7e-50  Score=330.41  Aligned_cols=126  Identities=28%  Similarity=0.431  Sum_probs=120.6

Q ss_pred             CeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCC
Q 026094           61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (243)
Q Consensus        61 M~v~~~tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~  139 (243)
                      |++++++|+++|++ ++++|||++|+++|++  |||++|+|+||++||||||+|||| ||+|+.||+++|++|||+++..
T Consensus         1 M~~~~~~i~~~T~~~~~~~dIT~~v~~~v~~--s~i~~Giv~vf~~HTTasl~inE~-dp~~~~Dl~~~l~~lvP~~~~~   77 (139)
T d1vmja_           1 MKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPYS   77 (139)
T ss_dssp             CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCGG
T ss_pred             CCcEEEEEEEECCCCCEEEEChHHHHHHHHH--hCCceEEEEEEeCCCceEEEEecC-chhHHhhHHHHHHHhhccCCcc
Confidence            89999999999987 5899999999999998  999999999999999999999999 9999999999999999987434


Q ss_pred             CceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT  189 (243)
Q Consensus       140 ~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~  189 (243)
                      .|+|+.+|+|||+|||||+|+|+|++|||.||+|.||+||+|||||||+.
T Consensus        78 ~y~H~~~g~dn~~aHiks~l~g~s~tipi~~G~L~LGtWQ~I~l~E~dg~  127 (139)
T d1vmja_          78 QYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGM  127 (139)
T ss_dssp             GCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCS
T ss_pred             ccCcCCccCCCcHHHHHHhhhCCeEEEEEECCEECccCCCEEEEEECcCC
Confidence            79999999999999999999999999999999999999999999999964

>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein BH3498
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=3.1e-47  Score=311.80  Aligned_cols=120  Identities=32%  Similarity=0.398  Sum_probs=112.1

Q ss_pred             EEEEEEecCCCC-eEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCce
Q 026094           64 AQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK  142 (243)
Q Consensus        64 ~~~tItV~T~~r-g~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~  142 (243)
                      |+++|+|+|+++ +++|||++|+++|++  |||++|+|+||++||||||+||||+||+|+.||+++|++|+|++.  .|.
T Consensus         3 ~~~~~~~~T~~~~~~idIT~~V~~~v~~--sgi~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~l~P~~~--~~~   78 (136)
T d1vmfa_           3 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH--END   78 (136)
T ss_dssp             CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC--TTC
T ss_pred             cEEEEEEEECCCCeEEEChHHHHHHHHH--cCCcceEEEEEeCCCceEEEEecCCCccHHHHHHHHHhccCCccc--ccc
Confidence            789999999876 699999999999998  999999999999999999999999999999999999999999864  343


Q ss_pred             eCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094          143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT  189 (243)
Q Consensus       143 H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~  189 (243)
                      |  +++|||+|||||+|+|+|++|||.||+|.||+||+|||+|||+.
T Consensus        79 ~--~~~~n~~aHlks~l~g~s~tiPv~~G~L~LGtWQ~I~l~E~d~~  123 (136)
T d1vmfa_          79 R--HMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGP  123 (136)
T ss_dssp             C--CTTSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCC
T ss_pred             e--eccCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEEccCC
Confidence            3  36889999999999999999999999999999999999999964

>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein SSO2532
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=3.3e-47  Score=311.87  Aligned_cols=124  Identities=25%  Similarity=0.432  Sum_probs=117.6

Q ss_pred             CCeEEEEEEEecCCCC-eEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCC
Q 026094           60 NPRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS  138 (243)
Q Consensus        60 ~M~v~~~tItV~T~~r-g~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~  138 (243)
                      .|++++++|+|+|.++ +++|||++|+++|++  |||++|+|+||++||||||+|||| ||++++|++++|++++|++. 
T Consensus         1 ~M~~~~~~i~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~i~En-~~~~~~d~~~~l~~~~p~~~-   76 (138)
T d1vpha_           1 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPSR-   76 (138)
T ss_dssp             CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS-
T ss_pred             CCceEEEEEEEEECCCCEEEECHHHHHHHHHH--cCCCccEEEEEeCCCeeEEEEEcc-hhhhHHHHHHhhhhhccccC-
Confidence            4999999999999886 999999999999998  999999999999999999999998 88999999999999999874 


Q ss_pred             CCceeCccCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094          139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT  189 (243)
Q Consensus       139 ~~Y~H~~eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~  189 (243)
                       .|+|+. ++|||+|||||+|+|+|++|||.||+|.||+||+|||+|||+.
T Consensus        77 -~y~h~~-~~dn~~aHiks~L~g~s~tipi~dG~L~LGtWQ~I~l~E~d~~  125 (138)
T d1vpha_          77 -SWKHNL-IDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGP  125 (138)
T ss_dssp             -CCGGGG-TCSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCC
T ss_pred             -ccceec-CCCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEECcCC
Confidence             699864 7999999999999999999999999999999999999999954

>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: B.subtilis YugU ortolog CAC0907
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=100.00  E-value=1.1e-46  Score=306.63  Aligned_cols=116  Identities=34%  Similarity=0.451  Sum_probs=110.0

Q ss_pred             EEEecCCC-CeEEeCcHHHHHHHHhhccCcceeeEEEEeccceeEEEEeccCCcchHHHHHHHHHhhCCCCCCCCceeCc
Q 026094           67 TVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL  145 (243)
Q Consensus        67 tItV~T~~-rg~~DIT~eV~~~V~~~~SGIknGlv~Vfv~HTTAsLtINEn~DP~l~~DL~~~LerLVP~~~~~~Y~H~~  145 (243)
                      +|+|+|++ .+|+|||++|+++|++  +|+++|+|+||++||||||+||||+||+|+.||+++|++|+|++.  +|+|. 
T Consensus         3 e~t~~T~~~~~~idIT~~V~~~v~~--s~i~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~lvP~~~--~y~H~-   77 (129)
T d1vmha_           3 EYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVG--DYKHV-   77 (129)
T ss_dssp             EEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSSS--SCCCT-
T ss_pred             EEEEEcCCCCEEEEChHHHHHHHHH--cCCcceEEEEEeCCceEEEEEcccCCcchHHHHHHHHHhcCCCCC--CCccc-
Confidence            58999987 4799999999999998  999999999999999999999999999999999999999999974  69995 


Q ss_pred             cCCCCchhhhhhhccCceEEEEeeCCeecccCCceEEEEEeccc
Q 026094          146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQELHGCMLLLT  189 (243)
Q Consensus       146 eG~DN~~AHLKSsLlG~SltIPV~dGkL~LGTWQ~IyLvEfr~~  189 (243)
                        ++||+||+||+|+|+|++|||.||+|.||+||+|||+|||+.
T Consensus        78 --~~n~~aHiks~l~g~s~tiPi~~G~L~LGtWQ~I~l~E~d~~  119 (129)
T d1vmha_          78 --EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGP  119 (129)
T ss_dssp             --TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCS
T ss_pred             --cCcchhhhhhHhcCCeEEEEEECCEECcCCccEEEEEECcCC
Confidence              569999999999999999999999999999999999999964