Citrus Sinensis ID: 026096

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MMMINSSNRDHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFKKRKMCKEMDQGSDAEISSNNGSSKSRTQSFSPSTPPPTAVSFRTAKRRKGVPHRAPMGGLLIEY
Secondary Structure (PSIPRED)
ccEEccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHccccccccccccccccccccEEEccccccccccHHHHcccccccEEEEEcccccEEEEcccccEEEccccEEEEEcccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccEEEccccccccccccccccHccccccccHHHHHHHHHHHccccHHccccccccccEEEEEcccccHHHHHccccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEcccEEEEEccccccccccccccccHHHHccccccccEEEEEEEEEEEccccccccHcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccEEEEEc
Coil and Loop (DISEMBL)
mmminssnrdhQELLTvrefkpknrrimggggpeeedeemsnkwppwlrpllqtsFFVQCKLHADAHKSECNMycldcmngalcSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVflnerpqprpgkgvtntclVCERSlldsftfcslgckiagtsknfkkrkmckemdqgsdaeissnngssksrtqsfspstppptavsfrtakrrkgvphrapmgglliey
Flexible Loop (DISEMBL)
mmminssnrdhqelltvrefkpknrrimggggpeeedeeMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIrrssyhdvirvSEIQKYLDITGVQTYIINSARIVFLnerpqprpgkgvtNTCLVCERSLLDsftfcslgckiagtsknfkkrKMCKEMDqgsdaeissnngssksrtqsfspstppptavsfrtakrrkgvphrapmgglliey
Low Complexity Region (SEG)
MMMINSSNRDHQELLTVREFKPKNRRIMggggpeeedeeMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFKKRKMCKEMDQGSDAEISSNNGSSKsrtqsfspstppptAVSFRTAKRRKGVPHRAPMGGLLIEY
Disordered region (IsUnstruct)
*******************************************WPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNER*****GKGVTNTCLVCERSLLDSFTFCSLGCKIAGT*********************************************************************
Disordered Region (DISOPRED)
**********************************************WLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVF****************CLVCERSLLDSFTFCSLGCKIA************************************************************RAPMGGLLIEY
Disordered Region (DISEMBL)
**********HQELLTVREFKPKNRRIMG*************KWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFK*****************************************FRTAKRRKGVPHRAPMGGLLIEY
Disordered Region (DISPRO)
*********DHQELLTVREFKPKNRRIMGGGGPEEE**EMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSK****************************************************GVPHRAPMGGLLIEY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMMINSSNRDHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFKKRKMCKEMDQGSDAEISSNNGSSKSRTQSFSPSTPPPTAVSFRTAKRRKGVPHRAPMGGLLIEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
P0CB19	110	Uncharacterized protein A	no	no	0.427	0.945	0.286	3e-05

>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana GN=At3g50808 PE=4 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 25/129 (19%)

Query: 113 IQKYLDITGVQTYIINSARIVFLNER---PQPRPGKGVTNTCLVCERSL--LDSFTFCSL 167
           + +Y+DI+G+  Y IN   IV++N+R      R    V + C +CE  +    S  FCS+
Sbjct: 1   MSQYMDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSM 60

Query: 168 GCKIAGTSKNFKKRKMCKEMDQGSDAEISSNNGSSKSRTQSFSPSTPPPTAVSFRTAKRR 227
            CK            +  ++D     E+  N+    S     S     P     +   RR
Sbjct: 61  ECKFRSV--------LGSQLD-----ELMENS----SEVTEISEEIDEPV---MKKRHRR 100

Query: 228 KGVPHRAPM 236
           KG PHRAP 
Sbjct: 101 KGSPHRAPF 109

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
224124108	240	predicted protein [Populus trichocarpa]	0.971	0.983	0.764	1e-104
255558091	251	protein with unknown function [Ricinus c	0.934	0.904	0.804	1e-103
110681464	233	putative zinc-binding protein [Platanus	0.942	0.982	0.757	1e-102
357485195	240	hypothetical protein MTR_5g030130 [Medic	0.946	0.958	0.731	1e-100
217072374	240	unknown [Medicago truncatula] gi|3885098	0.946	0.958	0.726	1e-100
147833550	244	hypothetical protein VITISV_016796 [Viti	0.921	0.918	0.767	1e-100
225427189	262	PREDICTED: uncharacterized protein LOC10	0.942	0.874	0.760	1e-100
356531421	236	PREDICTED: uncharacterized protein LOC10	0.921	0.949	0.767	4e-99
356496400	236	PREDICTED: uncharacterized protein LOC10	0.921	0.949	0.767	4e-99
224144725	241	predicted protein [Populus trichocarpa]	0.934	0.941	0.794	5e-99

>gi|224124108|ref|XP_002319247.1| predicted protein [Populus trichocarpa] gi|222857623|gb|EEE95170.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/246 (76%), Positives = 208/246 (84%), Gaps = 10/246 (4%)

Query: 2   MMINSSNRDHQELLTVREFKPKNRRIMGGGGPEEEDEEMSN-KWPPWLRPLLQTSFFVQC 60
           M+IN      QE  TVRE KP  RRIMGGG P+  D+   + KWPPWL  LLQTSFFVQC
Sbjct: 1   MIIND-----QESTTVREIKPNIRRIMGGGSPDYVDDHKEDIKWPPWLHTLLQTSFFVQC 55

Query: 61  KLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDIT 120
           KLH+DAHKSECNMYCLDCMNGALCS+CLS H+DHRAIQIRRSSYHDVIRVSEIQKYLDIT
Sbjct: 56  KLHSDAHKSECNMYCLDCMNGALCSVCLSHHKDHRAIQIRRSSYHDVIRVSEIQKYLDIT 115

Query: 121 GVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFKK 180
            VQTYIINSA+IVFLNERPQPRPGKGVTNTC VCERSLLDSF+FCSL CKI GTSKNF+K
Sbjct: 116 EVQTYIINSAKIVFLNERPQPRPGKGVTNTCHVCERSLLDSFSFCSLACKIVGTSKNFRK 175

Query: 181 RKMCKEMDQGSDAEISS---NNGSSKSRTQSFSPSTPPPTAVSFRTAKRRKGVPHRAPMG 237
           +K  KEMD G D E S    +NGS+KS+ QSF+PSTPPPTA+++RTAKRRKGVP R+PMG
Sbjct: 176 KKRYKEMD-GPDTEKSMSGISNGSAKSKAQSFTPSTPPPTAMNYRTAKRRKGVPQRSPMG 234

Query: 238 GLLIEY 243
           G +IEY
Sbjct: 235 GFIIEY 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558091|ref|XP_002520074.1| protein with unknown function [Ricinus communis] gi|223540838|gb|EEF42398.1| protein with unknown function [Ricinus communis]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/241 (80%), Positives = 211/241 (87%), Gaps = 14/241 (5%)

Query: 16  TVREFKPKNRRIMGGGGPEEEDEEMSN---------KWPPWLRPLLQTSFFVQCKLHADA 66
           TVRE KPK+RRIMGGGGP+++D              KWPPWLRPLLQTSFFVQCKLHADA
Sbjct: 11  TVREIKPKSRRIMGGGGPDDDDGGGCGGHGGDKDDVKWPPWLRPLLQTSFFVQCKLHADA 70

Query: 67  HKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYI 126
           HKSECNMYCLDCMNGALCSLCLS H++HRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYI
Sbjct: 71  HKSECNMYCLDCMNGALCSLCLSYHKEHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYI 130

Query: 127 INSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFKKRKMCKE 186
           INSARIVFLNERPQPRPGKGVTNTC VCERSLLDSF+FCSLGCKI GTSKNF+K+KM KE
Sbjct: 131 INSARIVFLNERPQPRPGKGVTNTCQVCERSLLDSFSFCSLGCKIVGTSKNFRKKKMRKE 190

Query: 187 MDQGSDAEISSNN----GSSKSRTQSFSPSTPPPTAVSFRTAKRRKGVPHRAPMGGLLIE 242
           ++ GSD E S NN    GS KS+ QSF+PSTPPPTAV++RTAKRRKGVPHR+PMGG +IE
Sbjct: 191 IE-GSDTEESMNNGIGKGSPKSKIQSFTPSTPPPTAVNYRTAKRRKGVPHRSPMGGFIIE 249

Query: 243 Y 243
           Y
Sbjct: 250 Y 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110681464|emb|CAL25342.1| putative zinc-binding protein [Platanus x acerifolia]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/235 (75%), Positives = 200/235 (85%), Gaps = 6/235 (2%)

Query: 10  DHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKS 69
           D+QE  TV+E KPK+RRIMG GGPE+ED    NKWPPWL PLLQT FFVQCK HAD+HK 
Sbjct: 4   DNQEP-TVKEIKPKSRRIMGAGGPEDED----NKWPPWLSPLLQTRFFVQCKFHADSHKC 58

Query: 70  ECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINS 129
           ECNMYCLDCMNGALCSLCLS H+DHRAIQIRRSSYHDVIRVSEIQK LDI+GVQTY+INS
Sbjct: 59  ECNMYCLDCMNGALCSLCLSYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINS 118

Query: 130 ARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFKKRKMCKEMDQ 189
           AR+VFLNERPQPRPGKGVTNTC VCERSLLDSF FCSLGCKI GTSKN++K+K  +    
Sbjct: 119 ARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNYQKKKRSQATTS 178

Query: 190 GSDAEISSNN-GSSKSRTQSFSPSTPPPTAVSFRTAKRRKGVPHRAPMGGLLIEY 243
            S+   S  +  S K + QSF+PSTPPPT V++RTAKRRKG+PHRAPMGGL+IE+
Sbjct: 179 DSEESYSGRSLASEKIKVQSFTPSTPPPTVVNYRTAKRRKGIPHRAPMGGLIIEF 233

Source: Platanus x acerifolia

Species: Platanus x acerifolia

Genus: Platanus

Family: Platanaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485195|ref|XP_003612885.1| hypothetical protein MTR_5g030130 [Medicago truncatula] gi|355514220|gb|AES95843.1| hypothetical protein MTR_5g030130 [Medicago truncatula]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/238 (73%), Positives = 203/238 (85%), Gaps = 8/238 (3%)

Query: 10  DHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKS 69
           ++QE  +VRE KPKNRRIMG GGP+++D    N+WPPWL+PLL+ +FFVQCK+HAD+HKS
Sbjct: 4   ENQENTSVREIKPKNRRIMGAGGPDDDD----NRWPPWLKPLLKEAFFVQCKIHADSHKS 59

Query: 70  ECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINS 129
           ECNMYCLDCMNG LCSLCL+ H+DHR IQIRRSSYHDVIRV+EIQK+LDI GVQTYIINS
Sbjct: 60  ECNMYCLDCMNGPLCSLCLAYHKDHRYIQIRRSSYHDVIRVNEIQKHLDIAGVQTYIINS 119

Query: 130 ARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNF-KKRKMCKEMD 188
           AR+VFLNERPQPRPGKGVTNTC VCERSLLDSF FCSLGCKI GTSKNF KK++    M 
Sbjct: 120 ARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNFQKKKRHLTAMA 179

Query: 189 QGSDAEISSNNGSS---KSRTQSFSPSTPPPTAVSFRTAKRRKGVPHRAPMGGLLIEY 243
             S+   SSNN  S   K + QSF+PSTPPPT+V++RTAKRRKG+PHRAP+GGL ++Y
Sbjct: 180 SDSEESYSSNNIHSRQKKIKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPLGGLDVDY 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072374|gb|ACJ84547.1| unknown [Medicago truncatula] gi|388509820|gb|AFK42976.1| unknown [Medicago truncatula]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/238 (72%), Positives = 203/238 (85%), Gaps = 8/238 (3%)

Query: 10  DHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKS 69
           ++QE  +VRE KPKNRRIMG GGP+++D    N+WPPWL+PLL+ +FFVQCK+HAD+HKS
Sbjct: 4   ENQENTSVREIKPKNRRIMGAGGPDDDD----NRWPPWLKPLLKEAFFVQCKIHADSHKS 59

Query: 70  ECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINS 129
           ECNMYCLDCMNG LCSLCL+ H+DHR IQIRRSSYHDVIRV+EIQK+LDI GVQTY+INS
Sbjct: 60  ECNMYCLDCMNGPLCSLCLAYHKDHRYIQIRRSSYHDVIRVNEIQKHLDIAGVQTYVINS 119

Query: 130 ARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNF-KKRKMCKEMD 188
           AR+VFLNERPQPRPGKGVTNTC VCERSLLDSF FCSLGCKI GTSKNF KK++    M 
Sbjct: 120 ARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNFQKKKRHLTAMA 179

Query: 189 QGSDAEISSNNGSS---KSRTQSFSPSTPPPTAVSFRTAKRRKGVPHRAPMGGLLIEY 243
             S+   SSNN  S   K + QSF+PSTPPPT+V++RTAKRRKG+PHRAP+GGL ++Y
Sbjct: 180 SDSEESYSSNNIHSRQKKIKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPLGGLDVDY 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833550|emb|CAN63851.1| hypothetical protein VITISV_016796 [Vitis vinifera]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/232 (76%), Positives = 196/232 (84%), Gaps = 8/232 (3%)

Query: 16  TVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYC 75
            VRE KPK+RRIMG GGP+EED    N+WPPWL+PLL+ SFFVQCKLHAD+HKSECNMYC
Sbjct: 16  AVREIKPKSRRIMGAGGPDEED----NRWPPWLKPLLRESFFVQCKLHADSHKSECNMYC 71

Query: 76  LDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFL 135
           LDCMNGALCSLCL  H+DHRAIQIRRSSYHDVIRVSEIQK LDITGVQTYIINSAR+VFL
Sbjct: 72  LDCMNGALCSLCLGYHKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFL 131

Query: 136 NERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFKKRK----MCKEMDQGS 191
           NERPQPRPGKGVTNTC VCERSLLDSF FCSLGCKI GTS NF+K+K         D   
Sbjct: 132 NERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSTNFQKKKHQQPATASSDSEE 191

Query: 192 DAEISSNNGSSKSRTQSFSPSTPPPTAVSFRTAKRRKGVPHRAPMGGLLIEY 243
               SS+   +++  QSFSPSTPPPTAV++RTAKRRKG+PHRAPMGGL+IEY
Sbjct: 192 SYSSSSHGRQAQNAVQSFSPSTPPPTAVNYRTAKRRKGIPHRAPMGGLIIEY 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427189|ref|XP_002277964.1| PREDICTED: uncharacterized protein LOC100250554 [Vitis vinifera] gi|297742091|emb|CBI33878.3| unnamed protein product [Vitis vinifera]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/238 (76%), Positives = 199/238 (83%), Gaps = 9/238 (3%)

Query: 10  DHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKS 69
           D+QE   VRE KPK+RRIMG GGP+EED    N+WPPWL+PLL+ SFFVQCKLHAD+HKS
Sbjct: 29  DNQES-AVREIKPKSRRIMGAGGPDEED----NRWPPWLKPLLRESFFVQCKLHADSHKS 83

Query: 70  ECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINS 129
           ECNMYCLDCMNGALCSLCL  H+DHRAIQIRRSSYHDVIRVSEIQK LDITGVQTYIINS
Sbjct: 84  ECNMYCLDCMNGALCSLCLGYHKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINS 143

Query: 130 ARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFKKRK----MCK 185
           AR+VFLNERPQPRPGKGVTNTC VCERSLLDSF FCSLGCKI GTS NF+K+K       
Sbjct: 144 ARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSTNFQKKKHQQPATA 203

Query: 186 EMDQGSDAEISSNNGSSKSRTQSFSPSTPPPTAVSFRTAKRRKGVPHRAPMGGLLIEY 243
             D       SS+   + +  QSFSPSTPPPTAV++RTAKRRKG+PHRAPMGGL+IEY
Sbjct: 204 SSDSEESYSSSSHGRQALNAVQSFSPSTPPPTAVNYRTAKRRKGIPHRAPMGGLIIEY 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531421|ref|XP_003534276.1| PREDICTED: uncharacterized protein LOC100791221 [Glycine max]

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 178/232 (76%), Positives = 199/232 (85%), Gaps = 8/232 (3%)

Query: 16  TVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYC 75
           TVRE KPKNRRIMG GGP+++D    N+WPPWL+PLL+ SFFVQCKLHAD+HKSECNMYC
Sbjct: 9   TVREIKPKNRRIMGAGGPDDDD----NRWPPWLKPLLKESFFVQCKLHADSHKSECNMYC 64

Query: 76  LDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFL 135
           LDCMNG LCSLCL+ H+DHRAIQIRRSSYHDVIRVSEIQK LDITGVQTYIINSAR+VFL
Sbjct: 65  LDCMNGPLCSLCLAHHKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFL 124

Query: 136 NERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFKKRK---MCKEMDQGSD 192
           NERPQPRPGKGVTNTC VCERSLLDSF FCSLGCKI GTSKNF+KRK   M    D    
Sbjct: 125 NERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNFQKRKKQSMLMSSDSEDS 184

Query: 193 AEISSNNGSSKS-RTQSFSPSTPPPTAVSFRTAKRRKGVPHRAPMGGLLIEY 243
              +S +G  K+ + QSF+PSTPPPT+V++RTAKRRKG+PHRAPM GL+IEY
Sbjct: 185 YSSNSVHGLKKNFKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMVGLIIEY 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496400|ref|XP_003517056.1| PREDICTED: uncharacterized protein LOC100797900 [Glycine max]

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 178/232 (76%), Positives = 198/232 (85%), Gaps = 8/232 (3%)

Query: 16  TVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYC 75
            VRE KPKNRRIMG GGP++ED    N+WPPWL+PLL+ SFFVQCKLHAD+HKSECNMYC
Sbjct: 9   AVREIKPKNRRIMGAGGPDDED----NRWPPWLKPLLKESFFVQCKLHADSHKSECNMYC 64

Query: 76  LDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFL 135
           LDCMNG LCSLCL+ H+DHRAIQIRRSSYHDVIRVSEIQK LDITGVQTYIINSAR+VFL
Sbjct: 65  LDCMNGPLCSLCLAHHKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFL 124

Query: 136 NERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFKKRK---MCKEMDQGSD 192
           NERPQPRPGKGVTNTC VCERSLLDSF FCSLGCKI GTSKNF+KRK   M    D    
Sbjct: 125 NERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNFQKRKKQSMAMSSDSEDS 184

Query: 193 AEISSNNGSSKS-RTQSFSPSTPPPTAVSFRTAKRRKGVPHRAPMGGLLIEY 243
              +S +G  K+ + QSF+PSTPPPT+V++RTAKRRKG+PHRAPM GL+IEY
Sbjct: 185 YSSNSVHGLKKNCKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMVGLIIEY 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144725|ref|XP_002325391.1| predicted protein [Populus trichocarpa] gi|222862266|gb|EEE99772.1| predicted protein [Populus trichocarpa]

 Score =  366 bits (939), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 186/234 (79%), Positives = 207/234 (88%), Gaps = 7/234 (2%)

Query: 16  TVREFKPKNRRIMGGGGPEEEDEEMSN--KWPPWLRPLLQTSFFVQCKLHADAHKSECNM 73
           TVRE KP  RRIMGGGGP+++ ++     KWPPWL PLL+TSFFVQCKLHADAHKSECNM
Sbjct: 9   TVREIKPNIRRIMGGGGPDDDVDDHKEDIKWPPWLHPLLETSFFVQCKLHADAHKSECNM 68

Query: 74  YCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIV 133
           YCLDCMNGALCS+CLSLH DHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIV
Sbjct: 69  YCLDCMNGALCSVCLSLHSDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIV 128

Query: 134 FLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKIAGTSKNFKKRKMCKEMDQGSDA 193
           FLNERPQPRPGKGVTNTC VCERSLLDSF+FCSLGCKI GTSKNF+K+K  KEMD GSD 
Sbjct: 129 FLNERPQPRPGKGVTNTCHVCERSLLDSFSFCSLGCKIVGTSKNFRKKKRYKEMD-GSDT 187

Query: 194 EISS---NNGSSKSRTQSFSPSTPPPTAV-SFRTAKRRKGVPHRAPMGGLLIEY 243
           + S     NG ++S+ QSF+PSTPPP+A+ ++RTAKRRKGVPHR+PMGG +IEY
Sbjct: 188 DESMKGIGNGGARSKVQSFTPSTPPPSAMNNYRTAKRRKGVPHRSPMGGYIIEY 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.893	0.955	0.611	3.7e-71
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.831	0.948	0.658	7.7e-71
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.547	0.542	0.691	2.6e-55
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.530	0.524	0.697	5.4e-55
TAIR|locus:2178580	226	AT5G46710 [Arabidopsis thalian	0.847	0.911	0.504	3.4e-54
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.543	0.611	0.616	4.4e-45
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.596	0.767	0.522	1.1e-42
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.604	0.574	0.440	8.1e-35
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.530	0.530	0.446	4.3e-32
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.539	0.534	0.454	3e-31

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 137/224 (61%), Positives = 162/224 (72%)

Query:    16 TVREFKPKNRRIMXXXXXXXXXXXMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYC 75
             T+RE KPKNRRIM             N+WPPWL+PLL+  FFV CK H D+HKSECNMYC
Sbjct:     9 TIREIKPKNRRIMGAGGPEEE----ENRWPPWLKPLLKEQFFVHCKFHGDSHKSECNMYC 64

Query:    76 LDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFL 135
             LDC NG LCSLCL+ H+DHR IQIRRSSYHDVIRV+EIQKYLDI G+QTY+INSA++VFL
Sbjct:    65 LDCTNGPLCSLCLAHHKDHRTIQIRRSSYHDVIRVNEIQKYLDIGGIQTYVINSAKVVFL 124

Query:   136 NERPQPRPGKGVTNTCLVCERSLLD-SFTFCSLGCKIAGTSKNFKKRKMCKEMD-QGSDA 193
             NERPQPRPGKGVTNTC VC RSL+D SF FCSLGCKIAGTS+ F+K +    M+ + S +
Sbjct:   125 NERPQPRPGKGVTNTCKVCYRSLVDDSFRFCSLGCKIAGTSRGFEKGRENLLMETEDSSS 184

Query:   194 EISSNNGSSKXXXXXXXXXXXXXXAVSFRTAKRRKGVPHRAPMG 237
              I+     +               + + R  KRRKG+PHR+PMG
Sbjct:   185 SIAIGKNITNLQSFSPSTPPLTTSS-NCRIVKRRKGIPHRSPMG 227

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 137/208 (65%), Positives = 159/208 (76%)

Query:    41 SNK-WPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQI 99
             +NK +P WL+PLL+  FFVQCKLHAD+HKSECNMYCLDC NG LCSLCLS H+DH AIQI
Sbjct:     7 TNKTYPHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKDHHAIQI 66

Query:   100 RRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLL 159
             RRSSYHDVIRVSEIQK+LDITGVQTY+INSA++VFLNERPQPRPGKGV NTC VC RSL+
Sbjct:    67 RRSSYHDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVCYRSLV 126

Query:   160 DSFTFCSLGCKIAGTSKNFKKRKMCKEMDQGSDAEISSNNGSSKXXXXXXXXXXXXXX-- 217
             DSF FCSLGCKI+G SK  K+++    +    D+  S++ G  K                
Sbjct:   127 DSFRFCSLGCKISGISKK-KRKEWTNNLSDSDDSYSSTSIGRLKKNDDIMNNSFTPSTPP 185

Query:   218 --AVSFRTAKRRKGVPHRAPMGGLLIEY 243
               AV+ R AKRRKG+PHRAP GGL+IEY
Sbjct:   186 LSAVNRRIAKRRKGIPHRAPFGGLIIEY 213

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 92/133 (69%), Positives = 113/133 (84%)

Query:    45 PPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSY 104
             PPWL P+L+ ++F+ C +HA ++KSECNM+CLDC + A CS CL  HR+HR +QIRRSSY
Sbjct:    18 PPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLNHRNHRVLQIRRSSY 77

Query:   105 HDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTF 164
             H+V+RV+EIQKY+DI+ VQTYIINSARIVFLNERPQPR GKGVTNTC +C RSLLDSF F
Sbjct:    78 HNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 137

Query:   165 CSLGCKIAGTSKN 177
             CSLGCK+ G  ++
Sbjct:   138 CSLGCKLGGMKRD 150

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 90/129 (69%), Positives = 109/129 (84%)

Query:    45 PPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSY 104
             PPWL P+L+ S+FV C +H D++K+ECN++CLDC   A CS CL  H+DHR +QIRRSSY
Sbjct:    16 PPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQIRRSSY 75

Query:   105 HDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTF 164
             H+V+RV+EIQK++DI  VQTYIINSA+IVFLNERPQPR GKGVTNTC +C RSLLDSF F
Sbjct:    76 HNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 135

Query:   165 CSLGCKIAG 173
             CSLGCK+ G
Sbjct:   136 CSLGCKLGG 144

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178580 AT5G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 114/226 (50%), Positives = 142/226 (62%)

Query:    18 REFKPKNRRIMXXXXXXXXXXXMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLD 77
             RE KPKNRR M             N+WP WL+PLL   FF QCK H    ++EC MYCLD
Sbjct:    11 REIKPKNRRFMEG----------ENQWPIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLD 60

Query:    78 CMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNE 137
             C N + CSLCLS H +HR IQIR SSYH+V +V EIQKYLDI+ +QTY+INS++++FLNE
Sbjct:    61 CTNDSFCSLCLSEHENHRTIQIRISSYHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNE 120

Query:   138 RPQPRPGKGVTNTCLVCERSLLDS-FTFCSLGCKIAGTSKNFKKRKMCKEMDQGSDAEIS 196
             RPQ +PGKG TN C+VC R L ++ F FCS+GCK+AGTS  F+KR   K     SD   +
Sbjct:   121 RPQSKPGKGFTNACMVCYRGLAENCFRFCSIGCKVAGTSGVFQKR--VKHTTNDSDNSNN 178

Query:   197 SN---NGSSKXXXXXXXXXXXXXXAVSF--RTAKRR--KGVPHRAP 235
             S+   N SS                  F  R+ ++R  KG+PHRAP
Sbjct:   179 SSGVENNSSGAENGNSNLQSLSPPTPQFPPRSLRKRLRKGIPHRAP 224

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 82/133 (61%), Positives = 103/133 (77%)

Query:    45 PPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSY 104
             PPWL P+L+  +FV C +H+ + KSECN++CLDC   A CS CL+ HR HR IQIRRSSY
Sbjct:     9 PPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHRVIQIRRSSY 68

Query:   105 HDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTF 164
             H+V+RVSEIQK++DI+ +QTY+INSA+I FLN RPQ R GK +  TC +C R+LLDSF F
Sbjct:    69 HNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSRNLLDSFLF 128

Query:   165 CSLGCKIAGTSKN 177
             CSL CK+ G  KN
Sbjct:   129 CSLACKLEGV-KN 140

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 82/157 (52%), Positives = 103/157 (65%)

Query:    45 PPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQIRRSS 103
             P WL  LL+T+FF  C  H +  ++ECNM+CL C N A C  C S  H DH  +QIRRSS
Sbjct:     4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63

Query:   104 YHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGK-GVTNT--------CLVC 154
             YHDV+RVSEI+  LDI GVQTY+INSAR++FLNERPQP+    G  ++        C  C
Sbjct:    64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123

Query:   155 ERSLLDSFTFCSLGCKIAGTSKNFKKR--KMCKEMDQ 189
              R+LLD F FCSLGCK+ G  KN ++   ++ KE  Q
Sbjct:   124 CRTLLDPFRFCSLGCKVEGMRKNKEEEEERLRKERQQ 160

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 67/152 (44%), Positives = 90/152 (59%)

Query:    45 PPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSY 104
             P WL  L    FFV C  H  A K+E N+ CLDC   +LC  C+  HR HR +Q+RR  Y
Sbjct:     6 PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCT-SLCPHCVPSHRFHRLLQVRRYVY 64

Query:   105 HDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTF 164
             HDV+R+ ++QK +D + VQ Y INSA++VF+ +RPQ R  KG  N C  C+RSL + +  
Sbjct:    65 HDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYIH 124

Query:   165 CSLGCKIAGTSKNFKK----RKMCKEMDQGSD 192
             CSLGCK+    K ++      K C  +  G D
Sbjct:   125 CSLGCKVDFVMKRYRDITPFLKPCHTLTLGPD 156

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 59/132 (44%), Positives = 84/132 (63%)

Query:    40 MSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQI 99
             M+ K P WL  L+  +FF  C +H    KSE N++CL C   ++C  CL  HR H  +Q+
Sbjct:    15 MATK-PAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCL-SVCPHCLPSHRSHPLLQV 72

Query:   100 RRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLL 159
             RR  YHDV+R+S+++K +D + VQ Y IN A+++FLN+R Q R  K  +N C  C+R L 
Sbjct:    73 RRYVYHDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSR-AKVSSNVCFTCDRILQ 131

Query:   160 DSFTFCSLGCKI 171
             + F FCSL CK+
Sbjct:   132 EPFHFCSLSCKV 143

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
 Identities = 60/132 (45%), Positives = 82/132 (62%)

Query:    41 SNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIR 100
             S ++P WL  LL+  FF  C  H D  K+E N+ C+DC    +C  CLS H  HR +QIR
Sbjct:     3 SGEFPAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCL-TICPHCLSSHTSHRLLQIR 61

Query:   101 RSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLD 160
             R  Y DV+RV +  K +D + +Q Y  NS+++VF+NERPQ R  +G  N C+ C+RSL  
Sbjct:    62 RYVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRSLQS 121

Query:   161 SFTFCSLGCKIA 172
              + FC L CKI+
Sbjct:   122 PYLFCCLSCKIS 133

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	6e-44

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  142 bits (359), Expect = 6e-44
 Identities = 54/72 (75%), Positives = 63/72 (87%)

Query: 100 RRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLL 159
           RRSSYHDV+RVS+IQK +DI+GVQTY+INSA++VFLNERPQ RPGKG  N C  C+RSLL
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRPGKGSGNICETCDRSLL 60

Query: 160 DSFTFCSLGCKI 171
           D F FCSLGCK+
Sbjct: 61  DPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.45
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	94.75
smart00336	42	BBOX B-Box-type zinc finger.	93.59
PRK01343	57	zinc-binding protein; Provisional	87.21
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	86.03
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	85.5
PRK00418	62	DNA gyrase inhibitor; Reviewed	84.51
COG3024	65	Uncharacterized protein conserved in bacteria [Fun	83.87

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=1.1e-39  Score=245.75  Aligned_cols=72  Identities=65%  Similarity=1.157  Sum_probs=71.1

Q ss_pred             EeccccceeecchhhhhhcccceeeEEecCceEEEeeCCCCCCCCCCCCCcccccccccCCCCeeeeccccc
Q 026096          100 RRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKI  171 (243)
Q Consensus       100 RRssYhdVVRv~DIqkllD~S~IQtYvINsakVVFLn~RPq~r~~kg~~~~Ce~C~R~L~D~~rFCSL~CKv  171 (243)
                      |||||||||||+|||||||||+||||+|||+||||||+|||+++++++++.|++|+|+|+|+|+||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999997

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.45  E-value=0.00091  Score=44.11  Aligned_cols=37  Identities=32%  Similarity=0.820  Sum_probs=29.4

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc-cCCCCceeEE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQI   99 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~-~H~~HrvlQI   99 (243)
                      .|..|..   ...++||.+|. ..+|..|.. .|++|.++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~-~~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCN-EPLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTT-EEEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCC-CccCccCCCCCCCCCEEeEC
Confidence            5888875   23789999998 899999977 5999987754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=94.75  E-value=0.017  Score=36.80  Aligned_cols=36  Identities=25%  Similarity=0.588  Sum_probs=27.6

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc-cCCCCceeE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQ   98 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~-~H~~HrvlQ   98 (243)
                      .|+.|..   +...+||.+|. ..+|..|.. .|++|.++-
T Consensus         2 ~C~~H~~---~~~~~fC~~~~-~~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDR-ALLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccC-hhhhhhcChhhcCCCCEee
Confidence            4777753   23589999997 899999965 688887654

>smart00336 BBOX B-Box-type zinc finger

Probab=93.59  E-value=0.05  Score=35.12  Aligned_cols=35  Identities=31%  Similarity=0.836  Sum_probs=27.4

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc-cCCCCcee
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAI   97 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~-~H~~Hrvl   97 (243)
                      .|..|..   ....+||.+|. ..+|..|.. .|++|.++
T Consensus         5 ~C~~h~~---~~~~~~C~~c~-~~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECG-ALLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCC-cccccccChhhcCCCcee
Confidence            4777763   23589999998 889999976 58888765

>PRK01343 zinc-binding protein; Provisional

Probab=87.21  E-value=0.25  Score=36.38  Aligned_cols=29  Identities=24%  Similarity=0.543  Sum_probs=23.1

Q ss_pred             CCcccccccccCCCC-eeeecccccccccc
Q 026096          148 TNTCLVCERSLLDSF-TFCSLGCKIAGTSK  176 (243)
Q Consensus       148 ~~~Ce~C~R~L~D~~-rFCSL~CKv~~~~~  176 (243)
                      ...|-+|++.....+ -|||-.||..+..+
T Consensus         9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~   38 (57)
T PRK01343          9 TRPCPECGKPSTREAYPFCSERCRDIDLNR   38 (57)
T ss_pred             CCcCCCCCCcCcCCCCcccCHHHhhhhHHH
Confidence            456999999887655 59999999876553

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=86.03  E-value=0.18  Score=35.01  Aligned_cols=29  Identities=28%  Similarity=0.812  Sum_probs=24.1

Q ss_pred             CCccccccccc---CCCCeeeecccccccccc
Q 026096          148 TNTCLVCERSL---LDSFTFCSLGCKIAGTSK  176 (243)
Q Consensus       148 ~~~Ce~C~R~L---~D~~rFCSL~CKv~~~~~  176 (243)
                      .+.|.+|+|-+   .+...|||-.|++.+...
T Consensus         6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~~~   37 (43)
T PF12855_consen    6 NDYCIVCDKQIDPPDDGSLYCSEECRLKDQEK   37 (43)
T ss_pred             hhHHHHhhccccCCCCCccccCHHHHhHhhhc
Confidence            56799999999   678999999999865543

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=85.50  E-value=0.1  Score=38.22  Aligned_cols=29  Identities=31%  Similarity=0.724  Sum_probs=17.8

Q ss_pred             CCcccccccccCC----CCe-eeecccccccccc
Q 026096          148 TNTCLVCERSLLD----SFT-FCSLGCKIAGTSK  176 (243)
Q Consensus       148 ~~~Ce~C~R~L~D----~~r-FCSL~CKv~~~~~  176 (243)
                      +..|-+|++...-    +|+ |||-.||+.+..+
T Consensus         2 ~v~CP~C~k~~~~~~~n~~rPFCS~RCk~iDLg~   35 (57)
T PF03884_consen    2 TVKCPICGKPVEWSPENPFRPFCSERCKLIDLGR   35 (57)
T ss_dssp             EEE-TTT--EEE-SSSSS--SSSSHHHHHHHHS-
T ss_pred             cccCCCCCCeecccCCCCcCCcccHhhcccCHHH
Confidence            3469999998875    676 9999999876654

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=84.51  E-value=0.35  Score=36.14  Aligned_cols=29  Identities=28%  Similarity=0.681  Sum_probs=22.5

Q ss_pred             CCcccccccccC---C-CCe-eeecccccccccc
Q 026096          148 TNTCLVCERSLL---D-SFT-FCSLGCKIAGTSK  176 (243)
Q Consensus       148 ~~~Ce~C~R~L~---D-~~r-FCSL~CKv~~~~~  176 (243)
                      .-.|-+|++.+.   + +|+ |||-.||+.+..+
T Consensus         6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~   39 (62)
T PRK00418          6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLIDLGE   39 (62)
T ss_pred             cccCCCCCCcccccCCCCcCCcccHHHHhhhHHH
Confidence            456999999874   3 575 9999999876553

>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.87  E-value=0.39  Score=36.31  Aligned_cols=29  Identities=31%  Similarity=0.732  Sum_probs=22.9

Q ss_pred             CCcccccccccCC----CCe-eeecccccccccc
Q 026096          148 TNTCLVCERSLLD----SFT-FCSLGCKIAGTSK  176 (243)
Q Consensus       148 ~~~Ce~C~R~L~D----~~r-FCSL~CKv~~~~~  176 (243)
                      +-.|-+|++.+.-    +|| |||-.||+-+..+
T Consensus         7 ~v~CP~Cgkpv~w~~~s~frPFCSkRCklIDLg~   40 (65)
T COG3024           7 TVPCPTCGKPVVWGEESPFRPFCSKRCKLIDLGE   40 (65)
T ss_pred             cccCCCCCCcccccccCCcCcchhHhhhhcchhh
Confidence            3459999998864    666 9999999876654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 4e-06
 Identities = 33/188 (17%), Positives = 54/188 (28%), Gaps = 63/188 (33%)

Query: 8   NRDHQELLTVR----EFKPKNRRI----MGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQ 59
           +R  Q  L +R    E +P  + +    + G G          K   W+   +  S+ VQ
Sbjct: 132 SR-LQPYLKLRQALLELRP-AKNVLIDGVLGSG----------KT--WVALDVCLSYKVQ 177

Query: 60  CKLHADAH-----KSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQ 114
           CK+                  L+ +      L   +  D         S +  +R+  IQ
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQI--DPNWTSRSDHSSNIKLRIHSIQ 231

Query: 115 KYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCL-----VCERSLLDSFTFCSLGC 169
             L                 L  +P           CL     V      ++F      C
Sbjct: 232 AELRR--------------LLKSKPYEN--------CLLVLLNVQNAKAWNAFNL---SC 266

Query: 170 KIAGTSKN 177
           KI  T++ 
Sbjct: 267 KILLTTRF 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	94.91
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	94.4
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	94.25
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	94.0
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	93.69
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	92.12
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	92.01
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	90.27
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	90.06
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	87.95
2w0t_A	43	Lethal(3)malignant brain tumor-like 2 protein; zin	87.71
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	83.13

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=94.91  E-value=0.0094  Score=39.41  Aligned_cols=38  Identities=34%  Similarity=0.789  Sum_probs=30.1

Q ss_pred             ccccccccCCCCCcceeccccCCCcCCcccc-c-cCCCCceeEE
Q 026096           58 VQCKLHADAHKSECNMYCLDCMNGALCSLCL-S-LHRDHRAIQI   99 (243)
Q Consensus        58 ~~C~~H~~~~knE~N~FCldC~~~~lC~~Cl-~-~H~~HrvlQI   99 (243)
                      ..|..|...   ..++||.+|. ..+|..|. . .|++|+++.|
T Consensus         7 ~~C~~H~~e---~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            7 PMCKEHEDE---KINIYCLTCE-VPTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             CBCSSSTTS---BCCEEETTTT-EEECHHHHHHSTTTTSCEEEC
T ss_pred             CcCCCCCCc---cccEEcCCCC-eeEcccccCCCcCCCCcEEeC
Confidence            469988731   3679999997 89999996 3 8999987654

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=94.40  E-value=0.014  Score=40.36  Aligned_cols=36  Identities=36%  Similarity=0.840  Sum_probs=28.3

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ   98 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQ   98 (243)
                      .|..|...   ..++||.+|. ..+|..|..  .|++|+++-
T Consensus        10 ~C~~H~~e---~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~   47 (64)
T 2d8u_A           10 MCKEHEDE---KINIYCLTCE-VPTCSMCKVFGIHKACEVAP   47 (64)
T ss_dssp             CCSSCTTC---CCCSEESSSC-CCCCSHHHHSSSTTSSCEEC
T ss_pred             cCcCcCCC---ccceEcCcCC-ceeCccccCCCcCCCCCeeC
Confidence            49999542   4689999998 899999963  899887553

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=94.25  E-value=0.013  Score=38.83  Aligned_cols=36  Identities=25%  Similarity=0.596  Sum_probs=28.0

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc-cCCCCceeE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQ   98 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~-~H~~HrvlQ   98 (243)
                      .|..|...   ..++||.+|. ..+|..|.. .|++|+++-
T Consensus         8 ~C~~H~~e---~l~lfC~~~~-~~iC~~C~~~~H~~H~~~~   44 (50)
T 2yvr_A            8 YCNVHKHE---PLVLFCESCD-TLTCRDCQLNAHKDHQYQF   44 (50)
T ss_dssp             BCSSSTTC---BCCEEETTTT-EEECHHHHHTTTTTCCEEE
T ss_pred             cCcCCCCC---CEEEEeCCCC-EEEecccCCCcCCCCceec
Confidence            49989542   4689999997 889999964 788887654

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=94.00  E-value=0.025  Score=36.11  Aligned_cols=35  Identities=26%  Similarity=0.624  Sum_probs=28.3

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ   98 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQ   98 (243)
                      .|..|..    ...+||.+|. ..+|..|..  .|++|+++.
T Consensus         5 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A            5 KCSEHDE----RLKLYCKDDG-TLSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             CCCSSCS----SCCCCCCSSS-SSSCCTTSSCSSCTTCCCCC
T ss_pred             cchhhCC----eeeEEeCCCC-eEEeccCCCCCCCCCCcEec
Confidence            5888862    4689999997 889999964  799998753

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=93.69  E-value=0.028  Score=37.69  Aligned_cols=36  Identities=25%  Similarity=0.719  Sum_probs=29.1

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeEE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQI   99 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQI   99 (243)
                      .|..|..    ...+||.+|. ..+|..|..  .|++|+++-|
T Consensus        10 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHHE----ALSLFCYEDQ-EAVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTCC----BCCEEESSSC-SEECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhCC----eeeEEeCCCC-eEEeccccCCCCCCCCcEeeH
Confidence            5999962    4679999997 889999964  8999987654

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.12  E-value=0.064  Score=37.15  Aligned_cols=36  Identities=25%  Similarity=0.627  Sum_probs=29.5

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeEE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQI   99 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQI   99 (243)
                      .|..|..    ...+||.+|. ..+|..|..  .|++|+++.|
T Consensus        16 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~s~eH~~H~~~~l   53 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDG-KVICWLCERSQEHRGHHTFPT   53 (59)
T ss_dssp             BCTTTCC----BCCEEETTTC-SEECHHHHTSTTTTTCCEEEC
T ss_pred             cChhhCc----eeeeecCCCC-cEEecccCCCCcCCCCcEeeH
Confidence            4999963    4679999997 889999964  8999987655

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=92.01  E-value=0.05  Score=38.66  Aligned_cols=35  Identities=23%  Similarity=0.758  Sum_probs=27.7

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc-cCCCCceeE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQ   98 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~-~H~~HrvlQ   98 (243)
                      .|..|..    ...+||.+|. ..+|..|.. .|++|+++-
T Consensus        20 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~H~~H~~~~   55 (72)
T 2csv_A           20 KCPVHGK----TMELFCQTDQ-TCICYLCMFQEHKNHSTVT   55 (72)
T ss_dssp             BCTTTCC----BCCEEESSSC-CEECHHHHHTTTSSSCEEE
T ss_pred             cCcccCC----ceEEEeCCCC-eEEccccCCCCCCCCCEec
Confidence            5999942    4689999997 889999975 788876543

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=90.27  E-value=0.074  Score=38.47  Aligned_cols=38  Identities=34%  Similarity=0.755  Sum_probs=29.6

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeEEE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQIR  100 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQIR  100 (243)
                      .|..|...   ..++||.+|. ..+|..|..  .|++|+++-|-
T Consensus        20 ~C~~H~~e---~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l~   59 (84)
T 2dja_A           20 TCLDHENE---KVNMYCVSDD-QLICALCKLVGRHRDHQVASLN   59 (84)
T ss_dssp             CCSSCSSS---CCCEEETTTT-EEECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcCcCCc---cccEEcCCCC-ceEcccCcCCCCCCCCCccCHH
Confidence            59999531   3689999997 889999964  89998866543

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.06  E-value=0.041  Score=37.95  Aligned_cols=35  Identities=23%  Similarity=0.626  Sum_probs=28.5

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc--cCCCCceeE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ   98 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~HrvlQ   98 (243)
                      .|..|..    ...+||.+|. ..+|..|..  .|++|+++.
T Consensus        20 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQE----ALKLFCEVDE-EAICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTCC----BCCEEETTTT-EEECHHHHHSHHHHSSCEEC
T ss_pred             cChhhCc----eeeEEcCCCC-cEEecccCCCCCCCCCcEec
Confidence            4999952    4689999997 889999964  799998764

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=87.95  E-value=0.15  Score=37.74  Aligned_cols=37  Identities=38%  Similarity=0.802  Sum_probs=29.2

Q ss_pred             ccccccccCCCCCcceeccccCCCcCCcccc--ccCCCCceeE
Q 026096           58 VQCKLHADAHKSECNMYCLDCMNGALCSLCL--SLHRDHRAIQ   98 (243)
Q Consensus        58 ~~C~~H~~~~knE~N~FCldC~~~~lC~~Cl--~~H~~HrvlQ   98 (243)
                      ..|..|...   ..++||.+|. ..+|..|.  ..|++|+++-
T Consensus        60 ~~C~~H~~e---~l~~fC~~~~-~~iC~~C~~~~~H~~H~~~~   98 (101)
T 2jun_A           60 LMCLEHEDE---KVNMYCVTDD-QLICALCKLVGRHRDHQVAA   98 (101)
T ss_dssp             CCCSSCSSS---CCCEEETTTT-EEECHHHHHHTTTSSSCBCC
T ss_pred             CcCcCcCCC---cceEECCCCC-CccchhcCCCCCcCCCCeec
Confidence            369999642   3689999997 89999996  3899998654

>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}

Probab=87.71  E-value=0.1  Score=35.46  Aligned_cols=25  Identities=24%  Similarity=0.635  Sum_probs=18.3

Q ss_pred             CCCCcccccccc-cCC-----CCeeeecccc
Q 026096          146 GVTNTCLVCERS-LLD-----SFTFCSLGCK  170 (243)
Q Consensus       146 g~~~~Ce~C~R~-L~D-----~~rFCSL~CK  170 (243)
                      +....||.|++. +..     +-||||++|-
T Consensus         4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca   34 (43)
T 2w0t_A            4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS   34 (43)
T ss_dssp             CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred             CceehhhhhcCcchhhhhccCCcceechhhh
Confidence            345689999984 443     4489999995

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=83.13  E-value=0.74  Score=33.45  Aligned_cols=31  Identities=29%  Similarity=0.558  Sum_probs=24.9

Q ss_pred             CCCCCCCCCcccccccccCC----------CCeeeeccccc
Q 026096          141 PRPGKGVTNTCLVCERSLLD----------SFTFCSLGCKI  171 (243)
Q Consensus       141 ~r~~kg~~~~Ce~C~R~L~D----------~~rFCSL~CKv  171 (243)
                      .++.+...-+|+.|.+.|+.          +-.|||..|-.
T Consensus        13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~   53 (62)
T 2das_A           13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS   53 (62)
T ss_dssp             CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred             cCCCCccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence            45667778899999999983          45799999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	95.89
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	95.89
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	95.55
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.13
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	94.93
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	94.86
d1lv3a_	65	Hypothetical zinc finger protein YacG {Escherichia	80.7

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0011  Score=44.93  Aligned_cols=36  Identities=22%  Similarity=0.766  Sum_probs=29.2

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc-cCCCCceeEE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQI   99 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~-~H~~HrvlQI   99 (243)
                      .|..|..    ...+||.+|. ..+|..|+. .|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~-~~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQ-TCICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSC-CEECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCC-ceECcccCcccCCCCCeeCH
Confidence            6999943    4689999998 899999976 7888876543

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.89  E-value=0.0022  Score=40.55  Aligned_cols=34  Identities=26%  Similarity=0.644  Sum_probs=28.1

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc--cCCCCcee
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAI   97 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~Hrvl   97 (243)
                      .|+.|..    ..++||.+|. ..+|..|..  .|++|.++
T Consensus         2 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           2 KCSEHDE----RLKLYCKDDG-TLSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCSSCS----SCCCCCCSSS-SSSCCTTSSCSSCTTCCCC
T ss_pred             CCcccCc----ceeEEcccCC-cEeeccCcCCCCcCCCcEe
Confidence            5888853    5689999998 899999954  79999875

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0021  Score=42.39  Aligned_cols=36  Identities=36%  Similarity=0.824  Sum_probs=27.9

Q ss_pred             cccccccCCCCCcceeccccCCCcCCcccc-c-cCCCCceeE
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCL-S-LHRDHRAIQ   98 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl-~-~H~~HrvlQ   98 (243)
                      .|..|.+.   ..++||.+|. .++|..|. . .|++|.+.-
T Consensus         3 ~C~~H~~e---~l~~yC~~c~-~~iC~~C~~~~~Hk~H~v~~   40 (51)
T d2d8ua1           3 MCKEHEDE---KINIYCLTCE-VPTCSMCKVFGIHKACEVAP   40 (51)
T ss_dssp             CCSSCTTC---CCCSEESSSC-CCCCSHHHHSSSTTSSCEEC
T ss_pred             CCcccCcC---cceEEcCCCC-ceECccccCcCCcCcCcCcC
Confidence            58888642   3689999998 89999994 3 799986543

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0025  Score=43.86  Aligned_cols=39  Identities=33%  Similarity=0.743  Sum_probs=30.1

Q ss_pred             cccccccCCCCCcceeccccCCCcCCcccc-c-cCCCCceeEEEe
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCL-S-LHRDHRAIQIRR  101 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl-~-~H~~HrvlQIRR  101 (243)
                      .|+.|.+.   ..++||.+|. ..+|..|. . .|.+|.+.-|..
T Consensus        13 ~C~~H~~e---~l~~fC~~C~-~~iC~~C~~~~~Hk~H~~~~i~~   53 (71)
T d2djaa1          13 TCLDHENE---KVNMYCVSDD-QLICALCKLVGRHRDHQVASLND   53 (71)
T ss_dssp             CCSSCSSS---CCCEEETTTT-EEECHHHHHTSTTTTCCBCCCCS
T ss_pred             cCcccCCc---cceeEcCCCC-ceeccccccCCCCCCCcCcCHHH
Confidence            49999752   2589999997 89999995 3 699998765543

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0018  Score=42.18  Aligned_cols=35  Identities=40%  Similarity=0.820  Sum_probs=27.9

Q ss_pred             cccccccCCCCCcceeccccCCCcCCcccc-c-cCCCCcee
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCL-S-LHRDHRAI   97 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl-~-~H~~Hrvl   97 (243)
                      .|+.|.+.   +.++||.+|. .++|..|. . .|++|.+.
T Consensus         7 ~C~~H~~e---~l~~yC~~C~-~~iC~~C~~~~~H~~H~~~   43 (47)
T d2dq5a1           7 MCLEHEDE---KVNMYCVTDD-QLICALCKLVGRHRDHQVA   43 (47)
T ss_dssp             BCSSCTTS---BEEEEETTTT-EEEEHHHHHTSSTTSSCCC
T ss_pred             cchhhCCC---cceEEcCCCC-ccCCccCcCcCCcCCCeEe
Confidence            48888652   3689999998 89999994 3 79998764

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0057  Score=38.65  Aligned_cols=34  Identities=26%  Similarity=0.736  Sum_probs=28.3

Q ss_pred             cccccccCCCCCcceeccccCCCcCCccccc--cCCCCcee
Q 026096           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAI   97 (243)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~Hrvl   97 (243)
                      .|+.|..    ..++||.+|. ..+|..|..  .|++|+++
T Consensus         3 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~v~   38 (40)
T d2dida1           3 LCPQHHE----ALSLFCYEDQ-EAVCLICAISHTHRAHTVV   38 (40)
T ss_dssp             BCTTTCC----BCCEEESSSC-SEECHHHHTSSTTTTSCEE
T ss_pred             cchhhCc----cceEEcccCC-cEeeccCcCCCCcCCCcEe
Confidence            5888853    4689999998 899999953  79999875

>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Hypothetical zinc finger protein YacG
domain: Hypothetical zinc finger protein YacG
species: Escherichia coli [TaxId: 562]

Probab=80.70  E-value=0.12  Score=35.89  Aligned_cols=29  Identities=28%  Similarity=0.795  Sum_probs=22.0

Q ss_pred             CCcccccccccC----CCCe-eeecccccccccc
Q 026096          148 TNTCLVCERSLL----DSFT-FCSLGCKIAGTSK  176 (243)
Q Consensus       148 ~~~Ce~C~R~L~----D~~r-FCSL~CKv~~~~~  176 (243)
                      +-.|-+|++...    ..|+ |||-.||+.+..+
T Consensus         6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~   39 (65)
T d1lv3a_           6 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGE   39 (65)
T ss_dssp             EEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSC
T ss_pred             eeeCCCCCCccccCCCCCcCCchhHhhhhccHHH
Confidence            456999999763    3565 9999999876553