Citrus Sinensis ID: 026107

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
MMSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNFSASEFSAAASRAFVEQYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQANRSSSGLPFIYVVIVGFIGIILGYLMKKI
cccccccEEEccccEEEccccccEEEEEEEEEEccccEEEEEEEEcccccEEEEcccEEEccccEEEEEEEEccccccccccccccEEEEEEEEcccccccccccccccccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccc
ccccccEEEEcccHccccccccEEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEEcccccccccccccccEEEEEEEEcccccHHHccHHHHHHcccccEEHcEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcc
mmstgellniepqelqfpfeLRKQISCSlqlsnktdnYVAFKVkttnpkkycvrpntgvvlprstCDVIVTMqsqkeappdmqckdkfllqgvvaspgatakditpemfnkeaghhveeCKLRvlyvapprppspvhegseegssprasvsdngnfsasEFSAAASRAFVeqyepqdkSTEARALISKLTEEKNSVIQINNKLQQELELLRRQAnrsssglpfIYVVIVGFIGIILGYLMKKI
mmstgellniepQELQFPFELRKQISCSLQLSNKTDNYVAFKvkttnpkkycvrpntgvvlprsTCDVIVTMQsqkeappdmqCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVhegseegssprasVSDNGNFSASEFSAAASRAFVEQYEPQDKSTEARALISKlteeknsviQINNKLQQELELLRRQAnrsssglpfiYVVIVGFIGIILGYLMKKI
MMSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNfsasefsaaasrafVEQYEPQDKSTEARALISKLTEEKNSVIQINNKlqqelellrrqANRSSSGLPfiyvvivgfigiilgylMKKI
**************LQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM***********CKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV********************************************************************************************GLPFIYVVIVGFIGIILGYLM***
****GEL**IEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV*************************************************************************************************YVVIVGFIGIILGYLMKKI
MMSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPR**********************GNFSASEFSAAASRAFV***********ARALISKLTEEKNSVIQINNKLQQELELLRRQANRSSSGLPFIYVVIVGFIGIILGYLMKKI
****GELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPP**********************************************DKSTEARALISKLTEEKNSVIQINNKLQQELELLRRQANRSSSGLPFIYVVIVGFIGIILGYLMKKI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
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MMSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNFSASEFSAAASRAFVEQYEPQDKSTEARALxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLPFIYVVIVGFIGIILGYLMKKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query243 2.2.26 [Sep-21-2011]
Q9SHC8239 Vesicle-associated protei yes no 0.971 0.987 0.737 2e-93
Q8VZ95256 Vesicle-associated protei no no 0.975 0.925 0.736 2e-93
Q84WW5239 Vesicle-associated protei no no 0.975 0.991 0.590 4e-70
Q9SYC9 571 Vesicle-associated protei no no 0.654 0.278 0.654 1e-59
Q9LVU1220 Vesicle-associated protei no no 0.860 0.95 0.412 4e-48
O82213149 Vesicle-associated protei no no 0.522 0.852 0.692 5e-47
B9DHD7 386 Vesicle-associated protei no no 0.629 0.396 0.532 1e-39
Q5R601249 Vesicle-associated membra yes no 0.831 0.811 0.289 3e-14
Q9P0L0249 Vesicle-associated membra yes no 0.831 0.811 0.289 3e-14
Q0VCY1249 Vesicle-associated membra yes no 0.831 0.811 0.289 1e-13
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function desciption
 Score =  341 bits (875), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 177/240 (73%), Positives = 210/240 (87%), Gaps = 4/240 (1%)

Query: 4   TGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPR 63
           + ELL I+P +LQFPFEL+KQISCSL L NKTDNYVAFKVKTTNPKKYCVRPNTGVV PR
Sbjct: 2   SNELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPR 61

Query: 64  STCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLR 123
           S+ +V+VTMQ+QKEAP D+QCKDKFLLQ VVASPGAT KD+T EMF+KEAGH VEE KLR
Sbjct: 62  SSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLR 121

Query: 124 VLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNFSASEFSAAASRAFVEQYEPQDKSTEAR 183
           V+YVAPPRPPSPV EGSEEGSSPRASVSDNGN  AS+F+AA  R   ++ + QD S+EAR
Sbjct: 122 VVYVAPPRPPSPVREGSEEGSSPRASVSDNGN--ASDFTAAP-RFSADRVDAQDNSSEAR 178

Query: 184 ALISKLTEEKNSVIQINNKLQQELELLRRQANRS-SSGLPFIYVVIVGFIGIILGYLMKK 242
           AL++KLTEEKNS +Q+NN+LQQEL+ LRR++ RS S G+PF+YV++VG IG+ILGY+MK+
Sbjct: 179 ALVTKLTEEKNSAVQLNNRLQQELDQLRRESKRSKSGGIPFMYVLLVGLIGLILGYIMKR 238
Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function description
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo abelii GN=VAPA PE=2 SV=2 Back     alignment and function description
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo sapiens GN=VAPA PE=1 SV=3 Back     alignment and function description
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos taurus GN=VAPA PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
356496332241 PREDICTED: vesicle-associated protein 1- 0.987 0.995 0.800 1e-110
357469911240 Vesicle-associated membrane protein-asso 0.983 0.995 0.759 1e-105
224136211241 predicted protein [Populus trichocarpa] 0.987 0.995 0.775 1e-105
224063699241 predicted protein [Populus trichocarpa] 0.987 0.995 0.780 1e-105
255541186241 vesicle-associated membrane protein, put 0.987 0.995 0.809 1e-104
351726060229 uncharacterized protein LOC100305725 [Gl 0.938 0.995 0.763 1e-102
217074260227 unknown [Medicago truncatula] 0.934 1.0 0.772 1e-100
224074143241 predicted protein [Populus trichocarpa] 0.987 0.995 0.767 1e-100
388501352239 unknown [Lotus japonicus] 0.979 0.995 0.726 1e-99
255576068240 vesicle-associated membrane protein, put 0.987 1.0 0.767 1e-99
>gi|356496332|ref|XP_003517022.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max] Back     alignment and taxonomy information
 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/241 (80%), Positives = 221/241 (91%), Gaps = 1/241 (0%)

Query: 2   MSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVL 61
           MS+GELL+I+PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVV+
Sbjct: 1   MSSGELLHIQPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVM 60

Query: 62  PRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECK 121
           PRSTCDVIVTMQ+QKEAPPDMQCKDKFLLQ VVASPGAT KDITPEMFNKE+GH VEECK
Sbjct: 61  PRSTCDVIVTMQAQKEAPPDMQCKDKFLLQSVVASPGATTKDITPEMFNKESGHDVEECK 120

Query: 122 LRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNFSASEFSAAASRAFVEQYEPQDKSTE 181
           LRV+YVAPP+PPSPV EGS+E SSPRASVS+NG+ SA+EF+  AS+AF E+ E QD S E
Sbjct: 121 LRVVYVAPPQPPSPVREGSDEDSSPRASVSENGHSSAAEFT-GASKAFNERAEHQDASFE 179

Query: 182 ARALISKLTEEKNSVIQINNKLQQELELLRRQANRSSSGLPFIYVVIVGFIGIILGYLMK 241
           ARA ISK+TEE+NSV++ N +LQQELELLRR A+RS  G+PF+YVV+VG IG+ILG+L+K
Sbjct: 180 ARAHISKVTEERNSVVEQNRRLQQELELLRRDASRSHGGVPFMYVVLVGIIGLILGFLLK 239

Query: 242 K 242
           +
Sbjct: 240 R 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357469911|ref|XP_003605240.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula] gi|158516790|gb|ABW70158.1| vesicle-associated protein [Medicago truncatula] gi|355506295|gb|AES87437.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula] gi|388503014|gb|AFK39573.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224136211|ref|XP_002326806.1| predicted protein [Populus trichocarpa] gi|222835121|gb|EEE73556.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224063699|ref|XP_002301268.1| predicted protein [Populus trichocarpa] gi|222842994|gb|EEE80541.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255541186|ref|XP_002511657.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223548837|gb|EEF50326.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351726060|ref|NP_001235834.1| uncharacterized protein LOC100305725 [Glycine max] gi|255626431|gb|ACU13560.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|217074260|gb|ACJ85490.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224074143|ref|XP_002304271.1| predicted protein [Populus trichocarpa] gi|222841703|gb|EEE79250.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388501352|gb|AFK38742.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255576068|ref|XP_002528929.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223531631|gb|EEF33458.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.888 0.843 0.694 4.3e-77
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.880 0.895 0.691 2.1e-75
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.880 0.895 0.559 5.1e-58
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.617 0.235 0.7 1.3e-54
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.518 0.845 0.698 5e-44
TAIR|locus:2025585 386 VAP27-2 "vamp/synaptobrevin-as 0.539 0.339 0.586 1.9e-39
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.580 0.640 0.510 1.3e-38
UNIPROTKB|G4N022285 MGG_06183 "Uncharacterized pro 0.555 0.473 0.350 1.1e-16
POMBASE|SPBC16G5.05c 383 SPBC16G5.05c "VAP family prote 0.699 0.443 0.320 4.4e-16
UNIPROTKB|Q5U511243 vapb "LOC495400 protein" [Xeno 0.757 0.757 0.298 1.3e-15
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/219 (69%), Positives = 172/219 (78%)

Query:     2 MSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVL 61
             MS  ELL +EP +LQFPFEL+KQISCSL L+NKTDN VAFKVKTTNPKKYCVRPNTGVVL
Sbjct:    17 MSNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVL 76

Query:    62 PRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECK 121
             PRSTC+V+VTMQ+QKEAP DMQCKDKFLLQGV+ASPG TAK++TPEMF+KEAGH VEE K
Sbjct:    77 PRSTCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETK 136

Query:   122 LRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNXXXXXXXXXXXXXXVEQYEPQDKSTE 181
             LRV YVAPPRPPSPVHEGSEEGSSPRASVSDNG+                    Q+ ++E
Sbjct:   137 LRVTYVAPPRPPSPVHEGSEEGSSPRASVSDNGHGSEFSFERFIVDNKAGH---QENTSE 193

Query:   182 ARALISKLTEEKNSVIQINNKXXXXXXXXXXXANRSSSG 220
             ARALI+KLTEEK S IQ+NN+           + +S SG
Sbjct:   194 ARALITKLTEEKQSAIQLNNRLQRELDQLRRESKKSQSG 232
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0046907 "intracellular transport" evidence=TAS
GO:0000326 "protein storage vacuole" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0016021 "integral to membrane" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006605 "protein targeting" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006886 "intracellular protein transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPBC16G5.05c SPBC16G5.05c "VAP family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U511 vapb "LOC495400 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SHC8VAP12_ARATHNo assigned EC number0.73750.97110.9874yesno
Q8VZ95VAP11_ARATHNo assigned EC number0.73660.97530.9257nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 8e-34
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 2e-19
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score =  117 bits (295), Expect = 8e-34
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 7   LLNIEPQE-LQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRST 65
           LL I+P + L F     KQ + +L L+N +D  VAFKVKTTNPK+Y VRPN G++ P  +
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 66  CDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGAT-AKDITPEMFNKEAG 114
             + +T Q   + P D + KDKF++Q   A   A  AK+     +   A 
Sbjct: 61  VTITITRQPFDKEPGDPK-KDKFVIQYTEAPDDAKDAKEAFKRAWKNGAP 109

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 243
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.97
KOG0439218 consensus VAMP-associated protein involved in inos 99.96
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.9
PF14874102 PapD-like: Flagellar-associated PapD-like 98.6
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 97.01
PRK10884206 SH3 domain-containing protein; Provisional 95.95
PRK09918230 putative fimbrial chaperone protein; Provisional 94.08
PRK09926246 putative chaperone protein EcpD; Provisional 93.44
PRK15249253 fimbrial chaperone protein StbB; Provisional 93.28
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 92.88
PF14646426 MYCBPAP: MYCBP-associated protein family 92.33
PRK11385236 putativi pili assembly chaperone; Provisional 91.96
PRK15295226 fimbrial assembly chaperone SthB; Provisional 91.94
PRK15246233 fimbrial assembly chaperone StbE; Provisional 91.79
PRK10132108 hypothetical protein; Provisional 91.58
PRK15211229 fimbrial chaperone protein PefD; Provisional 91.51
PRK15299227 fimbrial chaperone protein StiB; Provisional 91.33
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 90.76
PRK15192234 fimbrial chaperone BcfG; Provisional 90.48
PRK15290243 lfpB fimbrial chaperone protein; Provisional 89.48
PRK15208228 long polar fimbrial chaperone LpfB; Provisional 89.06
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 88.78
PF0595794 DUF883: Bacterial protein of unknown function (DUF 88.44
PRK15188228 fimbrial chaperone protein BcfB; Provisional 87.87
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 87.1
PF04420161 CHD5: CHD5-like protein; InterPro: IPR007514 Membe 86.86
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 86.85
PRK15195229 fimbrial chaperone protein FimC; Provisional 86.83
COG3121235 FimC P pilus assembly protein, chaperone PapD [Cel 86.02
COG307479 Uncharacterized protein conserved in bacteria [Fun 85.71
PRK15254239 fimbrial chaperone protein StdC; Provisional 85.01
PRK10404101 hypothetical protein; Provisional 84.74
PRK15218226 fimbrial chaperone protein PegB; Provisional 84.56
PF0234432 Myc-LZ: Myc leucine zipper domain; InterPro: IPR00 84.2
PRK1542279 septal ring assembly protein ZapB; Provisional 83.83
PF06280112 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 83.65
TIGR0244965 conserved hypothetical protein TIGR02449. Members 83.18
COG4575104 ElaB Uncharacterized conserved protein [Function u 82.59
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 82.25
PRK00888105 ftsB cell division protein FtsB; Reviewed 82.09
PRK13169110 DNA replication intiation control protein YabA; Re 81.82
PRK15224237 pili assembly chaperone protein SafB; Provisional 80.65
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=99.97  E-value=6.6e-31  Score=220.83  Aligned_cols=119  Identities=35%  Similarity=0.601  Sum_probs=110.7

Q ss_pred             eEEeCCeeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCC-CCCCCCc
Q 026107            8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP-PDMQCKD   86 (243)
Q Consensus         8 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p-~~~~~kD   86 (243)
                      |+|+|. +.|..|++...++.+.|.|++.++|+||||||+|+.||||||.|+|.|++++.|.|+||++++.| +|.+|||
T Consensus         3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd   81 (242)
T COG5066           3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD   81 (242)
T ss_pred             eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence            567776 56777999999999999999999999999999999999999999999999999999999999887 8999999


Q ss_pred             eEEEEEEEcCCCCCcCCCchhhhcccCCCceeEEEeEEEEEC
Q 026107           87 KFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA  128 (243)
Q Consensus        87 KFlVqs~~v~~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~~  128 (243)
                      |||||+...+.+..-.|+ .++|+..++.-|.++||+|+|.-
T Consensus        82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvyse  122 (242)
T COG5066          82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYSE  122 (242)
T ss_pred             eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEeec
Confidence            999999999987777788 89999998888999999999983

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PRK10132 hypothetical protein; Provisional Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PRK15192 fimbrial chaperone BcfG; Provisional Back     alignment and domain information
>PRK15290 lfpB fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK15208 long polar fimbrial chaperone LpfB; Provisional Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD Back     alignment and domain information
>PRK15188 fimbrial chaperone protein BcfB; Provisional Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PRK15195 fimbrial chaperone protein FimC; Provisional Back     alignment and domain information
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK15254 fimbrial chaperone protein StdC; Provisional Back     alignment and domain information
>PRK10404 hypothetical protein; Provisional Back     alignment and domain information
>PRK15218 fimbrial chaperone protein PegB; Provisional Back     alignment and domain information
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information
>COG4575 ElaB Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>PRK15224 pili assembly chaperone protein SafB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
2rr3_A130 Solution Structure Of The Complex Between Human Vap 6e-13
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 1e-12
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 3e-12
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 5e-12
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 7e-12
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 8e-07
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 12  PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVT 71
           P +L+F       ++ +L+L N +D  V FKVKTT P++YCVRPN+G++ P ST  V V 
Sbjct: 15  PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM 74
Query: 72  MQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAG-HHVEECKLRVLYVAP 129
           +Q   +  P+ + K KF++Q + A P  +      E   KEA    + + KLR ++  P
Sbjct: 75  LQPF-DYDPNEKSKHKFMVQTIFAPPNTSDM----EAVWKEAKPDELMDSKLRCVFEMP 128
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 3e-45
2cri_A147 Vesicle-associated membrane protein-associated pro 2e-37
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 6e-36
1z9l_A128 Vesicle-associated membrane protein-associated pro 1e-34
1m1s_A116 WR4; structural genomics, major sperm protein, bio 2e-30
1row_A109 SSP-19, MSP-domain protein like family member; bet 1e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  147 bits (372), Expect = 3e-45
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 6/144 (4%)

Query: 2   MSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVV 60
           +  G LL+I P  EL F      +    + L+N T N VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 61  LPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEA-GHHVEE 119
            P ++ D+IV+          +  +D+FL+        +         F KE   + V E
Sbjct: 73  DPGASIDIIVSPH----GGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 120 CKLRVLYVAPPRPPSPVHEGSEEG 143
            +LR   V   +P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 100.0
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.96
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.96
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.36
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 98.06
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 98.03
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.53
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.52
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.0
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 94.29
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 92.68
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 92.24
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 91.85
4ay0_A218 Chaperone protein CAF1M; amino acid motifs, bacter 91.48
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 91.23
1l4i_A206 SFAE protein; periplasmic chaperone, immunoglobuli 90.11
3gfu_C224 Chaperone protein FAEE; immunoglobulin like fold, 88.05
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 86.96
1yew_A382 Particulate methane monooxygenase, B subunit; memb 86.24
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 84.84
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 84.36
2r39_A118 FIXG-related protein; structural GE PSI-2, protein 84.19
3rfr_A419 PMOB; membrane, oxidoreductase; 2.68A {Methylocyst 83.37
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 80.62
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
Probab=100.00  E-value=5.5e-38  Score=256.54  Aligned_cols=135  Identities=30%  Similarity=0.489  Sum_probs=122.4

Q ss_pred             CCCceEEeCC-eeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCCC
Q 026107            4 TGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDM   82 (243)
Q Consensus         4 ~~~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~~   82 (243)
                      .+++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.+    .
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~   90 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V   90 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence            4579999997 9999999999999999999999999999999999999999999999999999999999999753    3


Q ss_pred             CCCceEEEEEEEcC--CCCCcCCCchhhhcccCCCceeEEEeEEEEECCCCCCCCCCCCCCCC
Q 026107           83 QCKDKFLLQGVVAS--PGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEG  143 (243)
Q Consensus        83 ~~kDKFlVqs~~v~--~~~~~~d~~~~~w~~~~~~~i~e~kL~v~~~~~~~~~s~~~~~~~e~  143 (243)
                      +|+|||+||++.++  ++.+..|+ .++|++..+..++++||||+|+.+.+|+|++.++.++|
T Consensus        91 ~~kDKFlVqs~~v~~~~~~~~~d~-~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~  152 (152)
T 1wic_A           91 SAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG  152 (152)
T ss_dssp             CSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred             CCCCEEEEEEEEcCCcCCCChhhH-HHHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence            78999999999999  56556677 68999998889999999999999998888887776543
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 Back     alignment and structure
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} Back     alignment and structure
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 243
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 1e-47
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 1e-36
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 2e-28
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 3e-27
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  152 bits (386), Expect = 1e-47
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 6/144 (4%)

Query: 2   MSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVV 60
           +  G LL+I P  EL F      +    + L+N T N VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 61  LPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEA-GHHVEE 119
            P ++ D+IV+          +  +D+FL+        +         F KE   + V E
Sbjct: 73  DPGASIDIIVSPH----GGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 120 CKLRVLYVAPPRPPSPVHEGSEEG 143
            +LR   V   +P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 100.0
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.97
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.93
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.92
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 95.83
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 95.4
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 93.61
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 93.41
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 85.83
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 81.51
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-34  Score=233.75  Aligned_cols=134  Identities=29%  Similarity=0.454  Sum_probs=116.9

Q ss_pred             CCCCceEEeCC-eeeecccCCCeeeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccCCCCCCC
Q 026107            3 STGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD   81 (243)
Q Consensus         3 ~~~~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~Y~VrP~~GiI~P~~s~~V~Itlq~~~~~p~~   81 (243)
                      ..+++|.|+|. +|.|.+++++.++|.|+|+|+++++||||||||+|++|+|||++|+|.||++++|.|++++..    .
T Consensus        14 ~~~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~~----~   89 (152)
T d1wica_          14 FKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGL----T   89 (152)
T ss_dssp             BCCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSS----C
T ss_pred             cCCCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCCC----c
Confidence            35679999995 899999999999999999999999999999999999999999999999999999999997642    3


Q ss_pred             CCCCceEEEEEEEcCCCCC--cCCCchhhhcccCCCceeEEEeEEEEECCCCCCCCCCCCCC
Q 026107           82 MQCKDKFLLQGVVASPGAT--AKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSE  141 (243)
Q Consensus        82 ~~~kDKFlVqs~~v~~~~~--~~d~~~~~w~~~~~~~i~e~kL~v~~~~~~~~~s~~~~~~~  141 (243)
                      ..|+|||+|+++.+++..+  ..|+ .++|+...+..++++||+|+|+.+.+|++++-.+.+
T Consensus        90 ~~~kdKFli~~~~v~~~~~~~~~d~-~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~~~~~  150 (152)
T d1wica_          90 VSAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPS  150 (152)
T ss_dssp             CCSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCS
T ss_pred             ccCCCcEEEEEEEeCCCCCCCccCH-HHHhhcCCcCcEEEEEEEEEEeCCCCCCCccccCCC
Confidence            5689999999999986543  2455 689998888999999999999999877776644433
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure