Citrus Sinensis ID: 026126

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSINVFTAK
ccccccccEEEEEEccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccHHHHHHccccEEEccccccccccccHHHHHHHHHHccEEEEccccEEEEEEcccHHHHHHHHccccccccccccEEEEEEEcccccEEEEEEEEEEccEEEEEEccccHHHHHHHHHHcccccccEEEEEccccEEEEEEEcccHHHHHHHccccccccccccEEEEEEEEEEEEc
cccccccccEEEEEccHHHHccccccccccccEEEEccccEEEccccccccccHcccccccccccccHHHHHHHHHcccEEEEcccHHHcccHHHHHHHHHHcccEEEccccEEEEEccHHHHHHHHHHHHccHHHcccccEEEEEEEcccccEEcEEEEEEEcccEEEEEccccHHHHHHHHHHHccccccEEEEEccHHHHHHHHccHHHHHHHHHHcccccccccccccEEEEEEEEEcc
maatsstatthlivgstsrlhntrttkffqNGVVLTQKKTlslrrrrsasipptavlpfdlspppidhdLLETVKsegakisgegivetfgndgealdaadngvaavdlshfgrirvsgddriQFLHNQSTANFEILregqgcdtvfvtptaRTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFAdkveiqditkqTCLFVvvgpksnqvmrdlnlgdlvgeaygthrhysinvftak
maatsstatthlivgstsrlhntrttkffqngvvltqkktlslrrrrsasipptavlpfdlspppIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVgeaygthrhysinvftak
MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSINVFTAK
***********LIVGSTSRLHNTRTTKFFQNGVVLTQKKT****************************************ISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSINVF***
*********THLIVGSTSRLHNTRTTKFFQNGVVLT***************************PPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSINVFTA*
**********HLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSINVFTAK
*******ATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSINVFTAK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSINVFTAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query243 2.2.26 [Sep-21-2011]
P54378 362 Aminomethyltransferase OS yes no 0.473 0.317 0.262 3e-05
Q8RCV9 374 Aminomethyltransferase OS yes no 0.506 0.328 0.274 5e-05
C4K7V2 336 tRNA-modifying protein Yg yes no 0.432 0.312 0.300 6e-05
Q5WF30 367 Aminomethyltransferase OS yes no 0.489 0.324 0.278 7e-05
A8F8M9 362 Aminomethyltransferase OS yes no 0.539 0.361 0.279 9e-05
B9K6R7 363 Aminomethyltransferase OS yes no 0.551 0.369 0.264 0.0001
Q65HF9 364 Aminomethyltransferase OS yes no 0.629 0.420 0.226 0.0001
C3PHK3 370 Aminomethyltransferase OS yes no 0.518 0.340 0.25 0.0004
B0KD95 368 Aminomethyltransferase OS yes no 0.510 0.336 0.261 0.0004
>sp|P54378|GCST_BACSU Aminomethyltransferase OS=Bacillus subtilis (strain 168) GN=gcvT PE=1 SV=2 Back     alignment and function desciption
 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KNA 166
           D+SH G + VSG+D + FL    T +   L  G+   T    P   T+D    +   +N 
Sbjct: 48  DVSHMGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENR 107

Query: 167 VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDL 224
            +LV++          + ++   A  V+I + + Q  L  V GPK+  ++++L   D+
Sbjct: 108 YLLVINASNIDKDLAWMKEHA--AGDVQIDNQSDQIALLAVQGPKAEAILKNLTDADV 163
The glycine cleavage system catalyzes the degradation of glycine.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 0
>sp|Q8RCV9|GCST_THETN Aminomethyltransferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|C4K7V2|YGFZ_HAMD5 tRNA-modifying protein YgfZ OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=HDEF_2079 PE=3 SV=1 Back     alignment and function description
>sp|Q5WF30|GCST_BACSK Aminomethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|A8F8M9|GCST_THELT Aminomethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|B9K6R7|GCST_THENN Aminomethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|Q65HF9|GCST_BACLD Aminomethyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|C3PHK3|GCST_CORA7 Aminomethyltransferase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|B0KD95|GCST_THEP3 Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
356512604 423 PREDICTED: aminomethyltransferase-like [ 0.744 0.427 0.801 4e-84
225447955 430 PREDICTED: aminomethyltransferase [Vitis 0.975 0.551 0.642 3e-83
79367480 432 aminomethyltransferase [Arabidopsis thal 0.921 0.518 0.648 6e-83
46518443 423 At1g60990 [Arabidopsis thaliana] 0.921 0.529 0.648 6e-83
297837379 423 At1g60990 [Arabidopsis lyrata subsp. lyr 0.905 0.520 0.659 1e-82
357519357 422 Aminomethyltransferase [Medicago truncat 0.740 0.426 0.8 4e-82
255577330 433 fad oxidoreductase, putative [Ricinus co 0.967 0.542 0.633 4e-82
12323347 436 hypothetical protein; 60474-57856 [Arabi 0.921 0.513 0.613 3e-80
449444697 445 PREDICTED: aminomethyltransferase-like [ 0.757 0.413 0.760 4e-80
302788266 354 hypothetical protein SELMODRAFT_104148 [ 0.679 0.466 0.615 1e-54
>gi|356512604|ref|XP_003525008.1| PREDICTED: aminomethyltransferase-like [Glycine max] Back     alignment and taxonomy information
 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 145/181 (80%), Positives = 162/181 (89%)

Query: 58  PFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRV 117
           PFDLSPPPIDHD L+TVK+ G +ISGEGI+ETF ND EAL A DNGV  VDLSHFGRIRV
Sbjct: 61  PFDLSPPPIDHDFLDTVKTAGGEISGEGIIETFHNDDEALAAVDNGVVVVDLSHFGRIRV 120

Query: 118 SGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCS 177
           SG+DRIQFLHNQSTANFE L EGQGCDTVFVTPTARTIDIAHAW+MKNA+ LVVSP TC+
Sbjct: 121 SGEDRIQFLHNQSTANFESLHEGQGCDTVFVTPTARTIDIAHAWLMKNAITLVVSPETCT 180

Query: 178 SITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSI 237
           +ITEMLNKY+FFADKVEIQDITKQT  FV+VGPKS QVM +LNLGDLVG+ YGTH H+++
Sbjct: 181 TITEMLNKYIFFADKVEIQDITKQTSFFVLVGPKSGQVMENLNLGDLVGKPYGTHLHFNV 240

Query: 238 N 238
           +
Sbjct: 241 D 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225447955|ref|XP_002269147.1| PREDICTED: aminomethyltransferase [Vitis vinifera] gi|298204501|emb|CBI23776.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|79367480|ref|NP_176295.3| aminomethyltransferase [Arabidopsis thaliana] gi|145326078|ref|NP_001077748.1| aminomethyltransferase [Arabidopsis thaliana] gi|186492130|ref|NP_001117522.1| aminomethyltransferase [Arabidopsis thaliana] gi|51969110|dbj|BAD43247.1| unnamed protein product [Arabidopsis thaliana] gi|332195639|gb|AEE33760.1| aminomethyltransferase [Arabidopsis thaliana] gi|332195640|gb|AEE33761.1| aminomethyltransferase [Arabidopsis thaliana] gi|332195641|gb|AEE33762.1| aminomethyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|46518443|gb|AAS99703.1| At1g60990 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297837379|ref|XP_002886571.1| At1g60990 [Arabidopsis lyrata subsp. lyrata] gi|297332412|gb|EFH62830.1| At1g60990 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357519357|ref|XP_003629967.1| Aminomethyltransferase [Medicago truncatula] gi|355523989|gb|AET04443.1| Aminomethyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255577330|ref|XP_002529546.1| fad oxidoreductase, putative [Ricinus communis] gi|223530994|gb|EEF32849.1| fad oxidoreductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|12323347|gb|AAG51655.1|AC018908_21 hypothetical protein; 60474-57856 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449444697|ref|XP_004140110.1| PREDICTED: aminomethyltransferase-like [Cucumis sativus] gi|449511901|ref|XP_004164084.1| PREDICTED: aminomethyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302788266|ref|XP_002975902.1| hypothetical protein SELMODRAFT_104148 [Selaginella moellendorffii] gi|300156178|gb|EFJ22807.1| hypothetical protein SELMODRAFT_104148 [Selaginella moellendorffii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
TAIR|locus:2206051 432 AT1G60990 [Arabidopsis thalian 0.921 0.518 0.648 4.3e-77
UNIPROTKB|Q8EIH8 318 ygfZ "Folate-dependent protein 0.530 0.405 0.267 1.5e-06
TIGR_CMR|SO_0861 318 SO_0861 "conserved hypothetica 0.530 0.405 0.267 1.5e-06
TAIR|locus:2206051 AT1G60990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 151/233 (64%), Positives = 176/233 (75%)

Query:    14 VGSTSRLHNTRTTKFFQNGVVLTQKKTLSLR----RRRSASIPPTAV----LPFDLSPPP 65
             + S S + NT       NG VL ++++LSLR    R R   +   +     L FD SPPP
Sbjct:    16 IDSVSHITNTALLPCLYNGTVL-RRRSLSLRKCGFRERKFQLRCVSASSDSLQFDFSPPP 74

Query:    66 IDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQF 125
             IDHD L+T+   G K+S +G+VE+F ND EALDA DNGV  VDLSHFGRIRVSGDDR  F
Sbjct:    75 IDHDFLDTISVSGGKVSEDGVVESFDNDDEALDAFDNGVVVVDLSHFGRIRVSGDDRAHF 134

Query:   126 LHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNK 185
             LHNQ+TANFE L EGQGCDTVFVTPTARTIDIAHAWIMKNA++L VSP TC SI EMLNK
Sbjct:   135 LHNQTTANFESLYEGQGCDTVFVTPTARTIDIAHAWIMKNAILLTVSPTTCQSIIEMLNK 194

Query:   186 YVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSIN 238
             Y+FFADKVEI+DITKQTCLF + GPKSNQ+M  LNLGDL+G+ YG H+HYS +
Sbjct:   195 YIFFADKVEIKDITKQTCLFALAGPKSNQIMSKLNLGDLIGQPYGRHQHYSFD 247
GO:0004047 "aminomethyltransferase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0009507 "chloroplast" evidence=IDA
GO:0016226 "iron-sulfur cluster assembly" evidence=IGI
UNIPROTKB|Q8EIH8 ygfZ "Folate-dependent protein involved in synthesis and repair of FeS clusters YgfZ" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0861 SO_0861 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
pfam01571212 pfam01571, GCV_T, Aminomethyltransferase folate-bi 3e-24
COG0354 305 COG0354, COG0354, Predicted aminomethyltransferase 2e-16
COG0404 379 COG0404, GcvT, Glycine cleavage system T protein ( 1e-10
PRK00389 359 PRK00389, gcvT, glycine cleavage system aminomethy 5e-08
TIGR00528 362 TIGR00528, gcvT, glycine cleavage system T protein 4e-05
PLN02319 404 PLN02319, PLN02319, aminomethyltransferase 0.003
>gnl|CDD|216578 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain Back     alignment and domain information 
 Score = 95.8 bits (239), Expect = 3e-24
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 107 VDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KN 165
            D+SH G+I VSG D   FL    T +   L+ GQ   T+ +      +D    + + ++
Sbjct: 2   FDVSHMGKIEVSGPDAAAFLQRLLTNDVSKLKPGQATYTLLLNEKGGILDDLTVYRLGED 61

Query: 166 AVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV 225
             +LVV+          L KY  F  KV + D+T +  +  + GPK+ +++++L    L 
Sbjct: 62  EFLLVVNAANAEKDLAWLRKYAVF-SKVTVADVTDELAVLALQGPKARELLQELTDLSLE 120

Query: 226 GEAYGTHRHYSINV 239
              + +        
Sbjct: 121 ALPFFSFAEIEGGG 134

This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. Length = 212
>gnl|CDD|223431 COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|234742 PRK00389, gcvT, glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>gnl|CDD|233010 TIGR00528, gcvT, glycine cleavage system T protein Back     alignment and domain information
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 243
KOG2844 856 consensus Dimethylglycine dehydrogenase precursor 100.0
COG0404 379 GcvT Glycine cleavage system T protein (aminomethy 100.0
PLN02319 404 aminomethyltransferase 100.0
PRK13579 370 gcvT glycine cleavage system aminomethyltransferas 100.0
PRK12486 368 dmdA putative dimethyl sulfoniopropionate demethyl 100.0
PRK00389 359 gcvT glycine cleavage system aminomethyltransferas 100.0
TIGR00528 361 gcvT glycine cleavage system T protein. Eukaryotic 100.0
TIGR01372 985 soxA sarcosine oxidase, alpha subunit family, hete 100.0
KOG2770 401 consensus Aminomethyl transferase [Amino acid tran 99.96
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 99.96
PRK09559 327 putative global regulator; Reviewed 99.91
COG0354 305 Predicted aminomethyltransferase related to GcvT [ 99.76
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 99.52
KOG2929 348 consensus Transcription factor, component of CCR4 99.32
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 98.2
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 98.09
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 97.93
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 97.55
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 97.33
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 95.34
COG0486 454 ThdF Predicted GTPase [General function prediction 93.34
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 89.7
PRK00389359 gcvT glycine cleavage system aminomethyltransferas 87.3
TIGR00450 442 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE 84.36
COG0404379 GcvT Glycine cleavage system T protein (aminomethy 82.62
PRK05291 449 trmE tRNA modification GTPase TrmE; Reviewed 81.34
PRK13579370 gcvT glycine cleavage system aminomethyltransferas 80.17
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-55  Score=417.69  Aligned_cols=226  Identities=21%  Similarity=0.310  Sum_probs=214.0

Q ss_pred             ceeeEEe-ecCCc----cccccccCccCCcchhhccccccccceeeeeCCCC---CCCCCCCCCCCCccchHHHHHHCCC
Q 026126            8 ATTHLIV-GSTSR----LHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVKSEGA   79 (243)
Q Consensus         8 ~~~~~~~-~~~~~----~d~~Rf~~~~~~~~~~~~r~~e~~~~~y~~~~P~~---~~R~~r~sp~~~~~~l~~~~~~~GA   79 (243)
                      -+||||+ |+|+-    +|++||+.++.|+.|+++|++|+|+++|++.||++   +||++|+||      ||++|+++||
T Consensus       393 ~la~wi~~g~p~~d~~~~D~~Rf~~~~~~~~~lr~r~~Es~~~nys~~yp~~e~~agRnlR~sp------ly~~L~~aGa  466 (856)
T KOG2844|consen  393 YLAEWIIHGQPPLDVHELDLRRFGKLQTNRYFLRERAHESYGKNYSVVYPKEEFQAGRNLRMSP------LYDRLESAGA  466 (856)
T ss_pred             HHHHHhhcCCCCccchhccHHHhhhhhcccHHHhhhchhhhhcccccccchhhhccccccccCc------cHHHHHhccc
Confidence            3799999 99987    99999999998999999999999999999999995   999999999      9999999999


Q ss_pred             eEe---cCCccc------------------------ccCChHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhhcccc
Q 026126           80 KIS---GEGIVE------------------------TFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA  132 (243)
Q Consensus        80 ~f~---~~~~p~------------------------~f~~~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~l~t~  132 (243)
                      +|+   +||+|.                        ||+.++.|++|||++|+++|||+|+||.|+|+||.+.||+||++
T Consensus       467 v~~e~~G~ERP~~F~~~~kd~~~~~~~q~~tf~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf~i~G~da~e~ld~LfSa  546 (856)
T KOG2844|consen  467 VFGEKHGWERPGWFYPPGKDDQYLPYGQDSTFRKPEWFDPVGSEYKACRERVGVFDMSSFGKFDITGQDAVELLDYLFSA  546 (856)
T ss_pred             chhhhccccCCCccCCCChhhhcccccccccccCCcchhhhHHHHHHHHhhceEeeccccceeeeccHHHHHHHHHHhhc
Confidence            998   477654                        55569999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccC-CCCeEEEEecCCEEEEEEECC
Q 026126          133 NFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFF-ADKVEIQDITKQTCLFVVVGP  210 (243)
Q Consensus       133 dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~-~~~V~i~d~t~~~~~l~v~GP  210 (243)
                      ||+. ++|.++||+|||++||++ |+++.|+++++|+|+.++.++.+.+.||++++.. +.+|.|+|+|+++++|+|+||
T Consensus       547 nv~~-~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~~~~~~~~v~l~DvT~~~~~l~i~GP  625 (856)
T KOG2844|consen  547 NVDV-PVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTDELGALSIIGP  625 (856)
T ss_pred             CCCC-CCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHHhhccCCceeeeechhhhceeeecCc
Confidence            9985 999999999999999999 9999999999999999999999999999999875 358999999999999999999


Q ss_pred             cHHHHHhhccCCCCCC--CCCceeEEEEEeee
Q 026126          211 KSNQVMRDLNLGDLVG--EAYGTHRHYSINVF  240 (243)
Q Consensus       211 ~A~~vL~~l~~~dls~--~~~~~~~~~~i~~~  240 (243)
                      +||.||++|++.|||+  |||+++|++++|++
T Consensus       626 ~sR~vLqelt~~dls~~~fp~~~~k~l~vg~~  657 (856)
T KOG2844|consen  626 QSRKVLQELTDADLSDDHFPFLTTKELKVGNA  657 (856)
T ss_pred             hHHHHHHhccCCCCCccccCcceeeeeecccc
Confidence            9999999999999998  99999999999865

>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02319 aminomethyltransferase Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PRK09559 putative global regulator; Reviewed Back     alignment and domain information
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>KOG2929 consensus Transcription factor, component of CCR4 transcriptional complex [Transcription] Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE Back     alignment and domain information
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
1yx2_A 365 Crystal Structure Of The Probable Aminomethyltransf 1e-05
3ttg_A 355 Crystal Structure Of Putative Aminomethyltransferas 1e-04
>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase From Bacillus Subtilis Length = 365 Back     alignment and structure 
Iteration: 1

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KNA 166
           D+SH G + VSG+D + FL    T +   L  G+   T    P   T+D    +   +N 
Sbjct: 51  DVSHXGEVEVSGNDSLSFLQRLXTNDVSALTPGRAQYTAXCYPDGGTVDDLLIYQKGENR 110
Query: 167 VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDL 224
            +LV++            ++   A  V+I + + Q  L  V GPK+  ++++L   D+
Sbjct: 111 YLLVINASNIDKDLAWXKEHA--AGDVQIDNQSDQIALLAVQGPKAEAILKNLTDADV 166
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From Leptospirillum Rubarum Length = 355 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
3ttg_A 355 Putative aminomethyltransferase; structural genomi 9e-32
1vly_A 338 SPOT PR51, unknown protein from 2D-PAGE; structura 1e-25
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 1e-12
1wos_A 364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 6e-08
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 1e-07
1yx2_A 365 Aminomethyltransferase; glycine cleavage system T 4e-07
3gir_A 393 Aminomethyltransferase; glycine cleavage system, a 5e-06
1wsr_A 375 Aminomethyltransferase; glycine-cleavage sytem; 2. 8e-06
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Length = 355 Back     alignment and structure
 Score =  118 bits (298), Expect = 9e-32
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 1/137 (0%)

Query: 99  AADNGVAAVDLS-HFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157
            A         S     I V G+DR  FL   ++ +     E     + F+ P AR +  
Sbjct: 31  IAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFD 90

Query: 158 AHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMR 217
           A     ++ + L     T       L KY+FF  K +I D++       +VGP++  V+ 
Sbjct: 91  AWCGNFEDKIALFPPAGTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLL 150

Query: 218 DLNLGDLVGEAYGTHRH 234
            L   +  G ++   ++
Sbjct: 151 SLFDNNFSGSSFRMLKN 167
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Length = 338 Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830 Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Length = 364 Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401 Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365 Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Length = 393 Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Length = 375 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 100.0
1yx2_A 365 Aminomethyltransferase; glycine cleavage system T 100.0
1wos_A 364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 100.0
1vlo_A 381 Aminomethyltransferase; NP417381, tetrahydrofolat 100.0
3gir_A 393 Aminomethyltransferase; glycine cleavage system, a 100.0
3tfi_A 369 GCVT-like aminomethyltransferase protein; demethyl 100.0
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 100.0
1wsr_A 375 Aminomethyltransferase; glycine-cleavage sytem; 2. 100.0
2gag_A 965 Heterotetrameric sarcosine oxidase alpha-subunit; 100.0
3ttg_A 355 Putative aminomethyltransferase; structural genomi 99.98
1vly_A 338 SPOT PR51, unknown protein from 2D-PAGE; structura 99.95
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 99.9
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 99.89
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 97.86
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 97.79
2bry_A497 NEDD9 interacting protein with calponin homology a 96.25
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 93.84
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 93.35
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 92.43
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 91.8
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 90.6
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 90.1
3geh_A 462 MNME, tRNA modification GTPase MNME; G protein, U3 88.78
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 88.57
3gee_A 476 MNME, tRNA modification GTPase MNME; G protein, cy 84.05
1xzp_A 482 Probable tRNA modification GTPase TRME; GTP-bindin 82.26
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 82.2
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-45  Score=368.46  Aligned_cols=223  Identities=18%  Similarity=0.203  Sum_probs=199.9

Q ss_pred             ceeeEEe-ecC----CccccccccCccCCcchhhccccccccceeeeeCCCC---CCCCCCCCCCCCccchHHHHHHCCC
Q 026126            8 ATTHLIV-GST----SRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVKSEGA   79 (243)
Q Consensus         8 ~~~~~~~-~~~----~~~d~~Rf~~~~~~~~~~~~r~~e~~~~~y~~~~P~~---~~R~~r~sp~~~~~~l~~~~~~~GA   79 (243)
                      .+|+||+ |.+    +.+|++||.+.+.+++|+++|+.|+|++.|.++||++   ++|++|+||      ||++|+++||
T Consensus       371 ~la~li~~~~~~~dl~~~~~~Rf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tp------l~~~~~~~ga  444 (830)
T 1pj5_A          371 AMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPRLSPRNLRVSP------FHARHKELGA  444 (830)
T ss_dssp             HHHHHHHHSSCSSCCTTTBGGGCCGGGGSHHHHHHHHHHHHHTTTCCCCTTCCCSSSCCSBCCT------THHHHHHTTE
T ss_pred             HHHHHHhCCCCCccccccChhhhccccCCHHHHHHHHHHHHHHhhccCCCCCccccccccccCc------CHHHHHHcCC
Confidence            4567888 443    3388999998778999999999999999999999995   999999999      9999999999


Q ss_pred             eEe---cCCcccccCC----------------------------hHHHHHHHhcCcEEEECCCCceEEEeCccHHHHHhh
Q 026126           80 KIS---GEGIVETFGN----------------------------DGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHN  128 (243)
Q Consensus        80 ~f~---~~~~p~~f~~----------------------------~~~E~~a~R~~vgl~DlS~~~~i~V~G~DA~~fLq~  128 (243)
                      +|.   +|++|.||..                            +.+||+|+|++|+|||+|||++|+|+|+||.+|||+
T Consensus       445 ~~~~~~g~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~a~r~~~gl~d~s~~~~~~v~G~da~~fL~~  524 (830)
T 1pj5_A          445 FFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQE  524 (830)
T ss_dssp             EEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTTSCEEEEESTTHHHHHHH
T ss_pred             EEEEECCEecccccCCcccccccccccccccccccccccccchhHHHHHHHHHhCeEEEEcCcEEEEEEECcCHHHHHHH
Confidence            986   6999999975                            779999999999999999999999999999999999


Q ss_pred             ccccCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHHhcccCC------CC-eEEEEecC
Q 026126          129 QSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFA------DK-VEIQDITK  200 (243)
Q Consensus       129 l~t~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~~~~~~~------~~-V~i~d~t~  200 (243)
                      ++|||| .+++|+++||+|||++|+|+ |.+++|+++++|+|   ++..+.+++||++++...      .+ |+|+|+|+
T Consensus       525 ~~t~dv-~l~~g~~~y~~~l~~~G~i~~d~~v~~~~~~~~~l---~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i~d~s~  600 (830)
T 1pj5_A          525 LTTADL-AKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQL---GANGNIDTAYFERAARHQTQSGSATDWVQVRDTTG  600 (830)
T ss_dssp             HBSSCC-CSCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEE---ECSSHHHHHHHHHHHHHHHHHSCTTCCCEEEECGG
T ss_pred             hccccc-cCCCCcEEEeEEECCCCEEEEeEEEEEEeCCEEEE---EeCHHHHHHHHHHHhhhcccccCCCCeEEEEEccC
Confidence            999999 88999999999999999999 56888889988888   344567999999997531      15 99999999


Q ss_pred             CEEEEEEECCcHHHHHhhccCCCCCC--CCCceeEEEEEeee
Q 026126          201 QTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSINVF  240 (243)
Q Consensus       201 ~~~~l~v~GP~A~~vL~~l~~~dls~--~~~~~~~~~~i~~~  240 (243)
                      ++++|+||||+|+++|++++..|+++  |||++++.+.+++.
T Consensus       601 ~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~~g~  642 (830)
T 1pj5_A          601 GTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGI  642 (830)
T ss_dssp             GEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTE
T ss_pred             CEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEECCE
Confidence            99999999999999999999888865  99999999888643
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Back     alignment and structure
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 243
d1vlya2241 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-t 5e-15
d1pj5a4315 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase 3e-08
d1wosa2278 d.250.1.1 (A:1-278) Glycine cleavage system T prot 5e-06
d1v5va2 310 d.250.1.1 (A:3-312) Glycine cleavage system T prot 6e-05
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 241 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Hypothetical protein YgfZ, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 70.0 bits (170), Expect = 5e-15
 Identities = 18/143 (12%), Positives = 40/143 (27%), Gaps = 2/143 (1%)

Query: 96  ALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI 155
              +A   +  + L  +    ++G D  +++  Q TA+   + E Q           +  
Sbjct: 9   PTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMW 68

Query: 156 DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQV 215
                +   +    +            L KY  F+          +  L  V G ++   
Sbjct: 69  SNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKV--TIAPDDERVLLGVAGFQARAA 126

Query: 216 MRDLNLGDLVGEAYGTHRHYSIN 238
           + +L       E        +  
Sbjct: 127 LANLFSELPSKEKQVVKEGATTL 149
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 315 Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Length = 278 Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 310 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
d1pj5a4315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter 100.0
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 100.0
d1v5va2 310 Glycine cleavage system T protein, GcvT {Pyrococcu 100.0
d1vloa2274 Glycine cleavage system T protein, GcvT {Escherich 100.0
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 99.94
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 92.87
d1vlya2 241 Hypothetical protein YgfZ, N-terminal domain {Esch 85.58
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 84.31
d1pj5a4315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter 80.67
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: N,N-dimethylglycine oxidase domain 3
species: Arthrobacter globiformis [TaxId: 1665]

Probab=100.00  E-value=7.3e-43  Score=312.32  Aligned_cols=178  Identities=20%  Similarity=0.216  Sum_probs=162.1

Q ss_pred             CCCCCCCCCCccchHHHHHHCCCeEe---cCCcccccCC----------------------------hHHHHHHHhcCcE
Q 026126           57 LPFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFGN----------------------------DGEALDAADNGVA  105 (243)
Q Consensus        57 R~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~~----------------------------~~~E~~a~R~~vg  105 (243)
                      ||+|+||      ||++|+++||+|+   +|++|.||..                            +.+||+|||++||
T Consensus         1 R~lr~sp------l~~~h~~~GA~f~~~~Gwe~P~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~E~~avR~~vg   74 (315)
T d1pj5a4           1 RNLRVSP------FHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVA   74 (315)
T ss_dssp             CCSBCCT------THHHHHHTTEEEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCE
T ss_pred             CCCccCc------cHHHHHHcCCEEEEecceecccccCcCCccccccccccccccccccccccccHHHHHHHHHHHHhcc
Confidence            8999999      9999999999996   6999999953                            6899999999999


Q ss_pred             EEECCCCceEEEeCccHHHHHhhccccCcCCCCCCceEEeEeecCCCcEE-EEEEEEEeCCEEEEEECCCChHHHHHHHH
Q 026126          106 AVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLN  184 (243)
Q Consensus       106 l~DlS~~~~i~V~G~DA~~fLq~l~t~dv~~l~~G~~~yt~~Ln~~G~i~-d~~v~~~~~d~f~l~~~~~~~~~~~~~L~  184 (243)
                      |||+|||++|+|+|+||.+|||+++|||++. ++|+++||+|||++|+|+ |.+++|+.+++|+|+++++....+..|+.
T Consensus        75 lfD~S~~g~i~v~G~da~~fL~~l~t~di~~-~~G~~~yt~~ln~~Ggi~~D~~v~r~~~~~f~l~~~~~~~~~~~~~~~  153 (315)
T d1pj5a4          75 MYDMTPLKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAA  153 (315)
T ss_dssp             EEECTTSCEEEEESTTHHHHHHHHBSSCCCS-CTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEECSSHHHHHHHHHHH
T ss_pred             eeccccceeEEeeccchHHHhhhhhcccccc-ccCceeEEEeeccccCeeeeeeeeecccccccccccchhhhhhhhhhh
Confidence            9999999999999999999999999999985 889999999999999999 67999999999999999888887877776


Q ss_pred             hccc----CCCCeEEEEecCCEEEEEEECCcHHHHHhhccCCCCCC--CCCceeEEEEEeeee
Q 026126          185 KYVF----FADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSINVFT  241 (243)
Q Consensus       185 ~~~~----~~~~V~i~d~t~~~~~l~v~GP~A~~vL~~l~~~dls~--~~~~~~~~~~i~~~~  241 (243)
                      ++..    ...+|+|+|+|+++++|+||||+|+++|++++..++++  |||+++++++|++.+
T Consensus       154 ~~~~~~~~~~~~v~i~d~t~~~~~laiqGP~s~~vL~~l~~~~~~~~~~~~~~~~~~~i~g~~  216 (315)
T d1pj5a4         154 RHQTQSGSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIP  216 (315)
T ss_dssp             HHHHHHSCTTCCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEE
T ss_pred             hhhhhcccccccceeEecCcceeeeeecCchHHHHHHHccccccccccccccceeEEEECCEE
Confidence            5432    13469999999999999999999999999999888874  999999999997654
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure