Citrus Sinensis ID: 026131

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDFLYSFNP
cHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHccccccEEEcccccccccccccccHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHcccccccHHHHHccccccccccccHHHHHHHHHccccccccEEEcccccHHHHHHHHHHccHHHHHHHHHEEccc
cHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHcccHccEEEEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHccccccEEEEEEcHHHHHHHHHHHcHHHHHHccccccccEEEEcccHHHHHHHHHHHHcccHHHHHHEEEEccc
MSWLLVIVSTIVVWVASLFKILNssrsqsnaaflttgdkkNVLLVIahpddesmffsptinyltsrrHNLHILCMsngnadgmgnirKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLiitfdnygvsghcnhrdvHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVhcllnehpkkSFLAMSQHHSQWVWcdflysfnp
MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDFLYSFNP
MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDFLYSFNP
**WLLVIVSTIVVWVASLFKILNSS***SNAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDFLYSF**
MSWLLVIVSTIVVWVASLFKILNSSR************KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDFLYSFNP
MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDFLYSFNP
MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDFLYSFNP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDFLYSFNP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query243 2.2.26 [Sep-21-2011]
O35790252 N-acetylglucosaminyl-phos yes no 0.942 0.908 0.340 1e-31
Q54C64258 Probable N-acetylglucosam yes no 0.835 0.786 0.340 9e-31
Q5SX19252 N-acetylglucosaminyl-phos yes no 0.938 0.904 0.333 1e-30
Q9HDW9248 Probable N-acetylglucosam yes no 0.901 0.883 0.336 3e-29
Q9Y2B2252 N-acetylglucosaminyl-phos yes no 0.950 0.916 0.351 7e-29
A6QQ24253 N-acetylglucosaminyl-phos yes no 0.818 0.786 0.387 4e-28
P23797304 N-acetylglucosaminyl-phos yes no 0.934 0.746 0.322 2e-21
>sp|O35790|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Rattus norvegicus GN=Pigl PE=2 SV=1 Back     alignment and function desciption
 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 130/241 (53%), Gaps = 12/241 (4%)

Query: 4   LLVIVSTIVVWVASLFKILNSS---RSQSNAAFLTTGDKKNVLLVIAHPDDESMFFSPTI 60
           LL +   ++ W     ++ NS+   RS   A     G +   L+VIAHPDDE+MFF+PTI
Sbjct: 6   LLCVAVAVLTW--GFLRVWNSAERMRSPEQAGLPGAGSR--ALVVIAHPDDEAMFFAPTI 61

Query: 61  NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120
             L   +  + +LC S+GN    G IRK EL ++CAVL IP  +V ++D  +F D  +  
Sbjct: 62  LGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQ 121

Query: 121 WNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWS-YLNGTSERNIEAWE 179
           W+ + +A  + + +   + DL++TFD  GVSGH NH  ++  + + +  G          
Sbjct: 122 WDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVLT 181

Query: 180 LMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDFLY 239
           L + N+LRKY   LD+  ++LS     +G +  L ++   ++  AMS H SQ +W   LY
Sbjct: 182 LQSVNVLRKYVFLLDLPWTLLSP----QGVLFVLTSKEVAQAKKAMSCHRSQLLWFRHLY 237

Query: 240 S 240
           +
Sbjct: 238 T 238
Involved in the second step of GPI biosynthesis. De-N-acetylation of N-acetylglucosaminyl-phosphatidylinositol.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 8EC: 9
>sp|Q54C64|PIGL_DICDI Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Dictyostelium discoideum GN=pigl PE=3 SV=1 Back     alignment and function description
>sp|Q5SX19|PIGL_MOUSE N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Mus musculus GN=Pigl PE=2 SV=1 Back     alignment and function description
>sp|Q9HDW9|GPI12_SCHPO Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi12 PE=3 SV=1 Back     alignment and function description
>sp|Q9Y2B2|PIGL_HUMAN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Homo sapiens GN=PIGL PE=1 SV=1 Back     alignment and function description
>sp|A6QQ24|PIGL_BOVIN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Bos taurus GN=PIGL PE=2 SV=1 Back     alignment and function description
>sp|P23797|GPI12_YEAST N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI12 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
359480111273 PREDICTED: probable N-acetylglucosaminyl 0.983 0.875 0.681 3e-93
297744323258 unnamed protein product [Vitis vinifera] 0.983 0.926 0.681 5e-93
224120368265 predicted protein [Populus trichocarpa] 0.983 0.901 0.655 3e-86
449441087285 PREDICTED: N-acetylglucosaminyl-phosphat 0.971 0.828 0.609 2e-82
42566026257 N-acetylglucosaminylphosphatidylinositol 0.975 0.922 0.611 3e-78
297817148250 hypothetical protein ARALYDRAFT_486264 [ 0.958 0.932 0.619 4e-78
388513397258 unknown [Medicago truncatula] 0.983 0.926 0.566 5e-77
388512735258 unknown [Lotus japonicus] 0.983 0.926 0.582 7e-77
42570939258 N-acetylglucosaminylphosphatidylinositol 0.930 0.875 0.620 6e-76
351727869243 uncharacterized protein LOC100527883 [Gl 0.917 0.917 0.559 5e-71
>gi|359480111|ref|XP_003632402.1| PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 165/242 (68%), Positives = 199/242 (82%), Gaps = 3/242 (1%)

Query: 1   MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTGD---KKNVLLVIAHPDDESMFFS 57
           M+WLL+I+S ++VWVASL K   +S S S   FL  G+   K+NVLLVIAHPDDESMFFS
Sbjct: 1   MAWLLIIISVVLVWVASLCKTRQASFSPSKTVFLNNGEVLQKRNVLLVIAHPDDESMFFS 60

Query: 58  PTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117
           PTI +L SR HNLH+LCMS GNADGMGNIRK+EL++A A+LK+PL+QVK+LD  DFQDGF
Sbjct: 61  PTITFLNSRGHNLHLLCMSTGNADGMGNIRKEELYQASAILKVPLQQVKILDHPDFQDGF 120

Query: 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEA 177
            K+WNH  LAKI+EEEV++ +ID IITFD+YGVSGHCNH DVH G+W  L+ TSERNIEA
Sbjct: 121 GKVWNHALLAKIIEEEVISHAIDTIITFDDYGVSGHCNHIDVHRGLWMLLHDTSERNIEA 180

Query: 178 WELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDF 237
           WEL++TNILRKYSGP+DIWLSILS+  Y    +HCLLN++P KSFLAM+QH SQWVW   
Sbjct: 181 WELVSTNILRKYSGPIDIWLSILSSMCYPSENMHCLLNKNPHKSFLAMAQHQSQWVWFRK 240

Query: 238 LY 239
           L+
Sbjct: 241 LF 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297744323|emb|CBI37293.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224120368|ref|XP_002318312.1| predicted protein [Populus trichocarpa] gi|222858985|gb|EEE96532.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449441087|ref|XP_004138315.1| PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like [Cucumis sativus] gi|449477144|ref|XP_004154943.1| PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42566026|ref|NP_191372.2| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|79315492|ref|NP_001030882.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|50198821|gb|AAT70443.1| At3g58130 [Arabidopsis thaliana] gi|51972138|gb|AAU15173.1| At3g58130 [Arabidopsis thaliana] gi|332646224|gb|AEE79745.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|332646225|gb|AEE79746.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297817148|ref|XP_002876457.1| hypothetical protein ARALYDRAFT_486264 [Arabidopsis lyrata subsp. lyrata] gi|297322295|gb|EFH52716.1| hypothetical protein ARALYDRAFT_486264 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388513397|gb|AFK44760.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388512735|gb|AFK44429.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|42570939|ref|NP_973543.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|79323249|ref|NP_001031431.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|145329967|ref|NP_001077969.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|45752762|gb|AAS76279.1| At2g27340 [Arabidopsis thaliana] gi|51971593|dbj|BAD44461.1| unnamed protein product [Arabidopsis thaliana] gi|330252882|gb|AEC07976.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|330252883|gb|AEC07977.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|330252884|gb|AEC07978.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|351727869|ref|NP_001235128.1| uncharacterized protein LOC100527883 [Glycine max] gi|255633458|gb|ACU17087.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
TAIR|locus:2085440257 AT3G58130 "AT3G58130" [Arabido 0.987 0.933 0.613 3.1e-76
TAIR|locus:2038608258 AT2G27340 "AT2G27340" [Arabido 0.938 0.883 0.625 6.5e-74
UNIPROTKB|Q9Y2B2252 PIGL "N-acetylglucosaminyl-pho 0.950 0.916 0.368 1.8e-32
WB|WBGene00013131258 Y52B11C.1 [Caenorhabditis eleg 0.806 0.759 0.401 1.3e-31
RGD|620437252 Pigl "phosphatidylinositol gly 0.942 0.908 0.340 1.1e-30
POMBASE|SPAPB2B4.01c248 gpi12 "pig-L, N-acetylglucosam 0.905 0.887 0.354 7.9e-30
MGI|MGI:2681271252 Pigl "phosphatidylinositol gly 0.934 0.900 0.334 2.1e-29
UNIPROTKB|A6QQ24253 PIGL "N-acetylglucosaminyl-pho 0.942 0.905 0.359 2.7e-29
ASPGD|ASPL0000060737312 AN0049 [Emericella nidulans (t 0.473 0.368 0.398 2e-27
ZFIN|ZDB-GENE-050506-60300 pigl "phosphatidylinositol gly 0.860 0.696 0.333 6.6e-26
TAIR|locus:2085440 AT3G58130 "AT3G58130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 151/246 (61%), Positives = 184/246 (74%)

Query:     1 MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTG---DKKNVLLVIAHPDDESMFFS 57
             M+WL+V VS IV+W+AS  KI   + S S AA L  G    KKNVL VIAHPDDESMFFS
Sbjct:     1 MAWLVVSVSLIVIWLASFCKIFFRATSISGAAILDDGKTPQKKNVLFVIAHPDDESMFFS 60

Query:    58 PTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117
             PTINYL S   NLH+LC+S GNADGMG+IR +ELHRACAVLK+PL+Q+K+L+  + QDGF
Sbjct:    61 PTINYLASNACNLHMLCLSTGNADGMGSIRNNELHRACAVLKVPLQQLKILNHPNLQDGF 120

Query:   118 DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEA 177
              +LW+H  L +I+EEEV    I  IITFDNYGVSGHCNHRDVH G+  +L   S RN++A
Sbjct:   121 GQLWSHDLLTEIIEEEVTKHDIHTIITFDNYGVSGHCNHRDVHRGVLKFLQTNSGRNVKA 180

Query:   178 WELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDF 237
             WEL++ NI RKY GP+DIWLSILSA +    +V  ++NE P KSF AM+QH SQWVW   
Sbjct:   181 WELVSLNIFRKYCGPVDIWLSILSA-KIHPSKV-IIINEQPWKSFKAMAQHLSQWVWFRK 238

Query:   238 LY-SFN 242
             L+ SF+
Sbjct:   239 LFVSFS 244
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2038608 AT2G27340 "AT2G27340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2B2 PIGL "N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00013131 Y52B11C.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|620437 Pigl "phosphatidylinositol glycan anchor biosynthesis, class L" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPAPB2B4.01c gpi12 "pig-L, N-acetylglucosaminylphosphatidyl inositoldeacetylase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
MGI|MGI:2681271 Pigl "phosphatidylinositol glycan anchor biosynthesis, class L" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6QQ24 PIGL "N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ASPGD|ASPL0000060737 AN0049 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050506-60 pigl "phosphatidylinositol glycan anchor biosynthesis, class L" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9HDW9GPI12_SCHPO3, ., 5, ., 1, ., 8, 90.33610.90120.8830yesno
Q9Y2B2PIGL_HUMAN3, ., 5, ., 1, ., 8, 90.35140.95060.9166yesno
O35790PIGL_RAT3, ., 5, ., 1, ., 8, 90.34020.94230.9087yesno
Q5SX19PIGL_MOUSE3, ., 5, ., 1, ., 8, 90.33330.93820.9047yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.89LOW CONFIDENCE prediction!
3rd Layer3.5.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
pfam02585115 pfam02585, PIG-L, GlcNAc-PI de-N-acetylase 8e-27
COG2120237 COG2120, COG2120, Uncharacterized proteins, LmbE h 2e-22
TIGR04000217 TIGR04000, thiol_BshB2, bacillithiol biosynthesis 8e-07
TIGR03445284 TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inosit 0.002
>gnl|CDD|217123 pfam02585, PIG-L, GlcNAc-PI de-N-acetylase Back     alignment and domain information 
 Score = 99.7 bits (249), Expect = 8e-27
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)

Query: 43  LLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD---------GMGNIRKDELHR 93
           L++ AHPDDE +    TI  L  + H +H++ +++G A           +G IR+ E   
Sbjct: 1   LVIAAHPDDEVLGAGGTIARLAEQGHEVHVVTLTDGEAGSNRLGLEEEELGAIRRREARA 60

Query: 94  ACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGH 153
           A  +L +  E+V  L   D  DG  + W+ + L   +   +     D+++T D     GH
Sbjct: 61  AAEILGV--ERVIFL---DLPDGGLREWDLEELLAALARLIREIRPDVVLTHDPGD--GH 113

Query: 154 CN 155
            +
Sbjct: 114 PD 115

Members of this family are related to PIG-L an N-acetylglucosaminylphosphatidylinositol de-N-acetylase (EC:3.5.1.89) that catalyzes the second step in GPI biosynthesis. Length = 115
>gnl|CDD|225031 COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown] Back     alignment and domain information
>gnl|CDD|188515 TIGR04000, thiol_BshB2, bacillithiol biosynthesis deacetylase BshB2 Back     alignment and domain information
>gnl|CDD|234214 TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D- glucopyranoside deacetylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 243
KOG3332247 consensus N-acetylglucosaminyl phosphatidylinosito 100.0
TIGR03446283 mycothiol_Mca mycothiol conjugate amidase Mca. Myc 100.0
TIGR03445284 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy 100.0
COG2120237 Uncharacterized proteins, LmbE homologs [Function 100.0
PRK02122652 glucosamine-6-phosphate deaminase-like protein; Va 100.0
PF02585128 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR0037 99.97
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 94.45
cd01715168 ETF_alpha The electron transfer flavoprotein (ETF) 93.61
PF12683275 DUF3798: Protein of unknown function (DUF3798); In 92.27
cd01985181 ETF The electron transfer flavoprotein (ETF) serve 89.71
PRK00726 357 murG undecaprenyldiphospho-muramoylpentapeptide be 85.74
PF04007 335 DUF354: Protein of unknown function (DUF354); Inte 84.98
PRK11677134 hypothetical protein; Provisional 83.04
cd03796 398 GT1_PIG-A_like This family is most closely related 81.01
COG2025 313 FixB Electron transfer flavoprotein, alpha subunit 80.41
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-46  Score=314.80  Aligned_cols=199  Identities=51%  Similarity=0.801  Sum_probs=181.1

Q ss_pred             CCCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 026131           36 TGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD  115 (243)
Q Consensus        36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d  115 (243)
                      .....|+|++.||||||++|+||||..+.+.|++|+++|+++|+++|+|++|++|+.+||..||+|.+++..++.|+++|
T Consensus        34 l~~~sriLLviAhpdDE~mFFsPtI~~L~~~~~~v~iLClSnGN~dg~G~iR~kEL~ra~~~lgi~~s~v~~l~~~~f~D  113 (247)
T KOG3332|consen   34 LLAESRILLVIAHPDDESMFFSPTILYLTSGACNVHILCLSNGNADGLGKIREKELHRACAVLGIPLSNVVVLDTPFFQD  113 (247)
T ss_pred             ccccceEEEEEeccCccccchhhHHHHHhcCCccEEEEEecCCCccccchHHHHHHHHHHHHHCCchhheEEecCCcCCC
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhc-CCCceEEeeehhhhhhhccCCchh
Q 026131          116 GFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGT-SERNIEAWELMTTNILRKYSGPLD  194 (243)
Q Consensus       116 ~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~-~~~~~~~ye~~s~~~~~~y~~~~d  194 (243)
                      ||++.|+++.+.+.+.+.++..+.++|+|||..|.+||++|++++.++..++... .++.+.++.+.|.|.++||.+.+|
T Consensus       114 g~~~~Wd~~~v~~~l~~~ie~~~~~~iiTFD~~GVSgH~NH~~~y~av~~l~~~~k~pk~v~~~~L~S~Ni~rKY~s~lD  193 (247)
T KOG3332|consen  114 GPGEDWDPDAVASILLQHIEVLNIDTIITFDNYGVSGHCNHIACYAAVDCLIDGLKLPKGVKYLTLKSINIFRKYISILD  193 (247)
T ss_pred             CcccccCHHHHHHHHHHHHHccCccEEEEecCCCcCCCCccHhhhhhHHHHhhhccCCCceEEEEEeehHHHHHhhhHHH
Confidence            9999999999999999999999999999999999999999999999998876543 467899999999999999999999


Q ss_pred             HHHHHHhhhcccCCceeEEEeCCHHHHHHHHHhchhhHhhhhhceec
Q 026131          195 IWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDFLYSF  241 (243)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~v~~~~~~k~~Am~~H~SQ~~wfr~l~~~  241 (243)
                      ++.+...+       ...++.-...+..+||.||+||++||||+|+.
T Consensus       194 i~~sliss-------~~~~i~kq~~~~~~aM~~H~SQmvWFRylyi~  233 (247)
T KOG3332|consen  194 ILLSLISS-------TVLFINKQMAMAFKAMMCHRSQMVWFRYLYIL  233 (247)
T ss_pred             hHHHHhcc-------eeEEEehhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99887742       24444333468899999999999999999974

>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca Back     alignment and domain information
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase Back     alignment and domain information
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown] Back     alignment and domain information
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated Back     alignment and domain information
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3 Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria Back     alignment and domain information
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>PRK11677 hypothetical protein; Provisional Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
2ixd_A242 LMBE-related protein; hexamer, deacetylase, rossma 3e-17
1uan_A227 Hypothetical protein TT1542; rossmann-like, struct 2e-15
1q74_A303 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- gluco 3e-14
3dfi_A270 Pseudoaglycone deacetylase DBV21; single alpha-bet 3e-10
3dff_A273 Teicoplanin pseudoaglycone deacetylases ORF2; lipo 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus} Length = 242 Back     alignment and structure
 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 39  KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNA--DGMGNIRKDELHRACA 96
             ++L   AH DD  +  + TI   T + + + I  ++  +   +G   +RK+E   A  
Sbjct: 3   GLHILAFGAHADDVEIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAAR 62

Query: 97  VLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNH 156
           ++ +  +    L + D       L+  +   + + + +      L+     Y    H +H
Sbjct: 63  IMGV--KTRLNLAMPD-----RGLYMKEEYIREIVKVIRTYKPKLVFA--PYYEDRHPDH 113

Query: 157 RDVHH 161
            +   
Sbjct: 114 ANCAK 118
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1 Length = 227 Back     alignment and structure
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A* Length = 303 Back     alignment and structure
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus} Length = 270 Back     alignment and structure
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A* Length = 273 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
2ixd_A242 LMBE-related protein; hexamer, deacetylase, rossma 100.0
1q74_A303 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- gluco 100.0
3dfi_A270 Pseudoaglycone deacetylase DBV21; single alpha-bet 100.0
1uan_A227 Hypothetical protein TT1542; rossmann-like, struct 100.0
3dff_A273 Teicoplanin pseudoaglycone deacetylases ORF2; lipo 100.0
3ih5_A217 Electron transfer flavoprotein alpha-subunit; alph 93.1
3tsa_A 391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 88.27
1efv_A 315 Electron transfer flavoprotein; electron transport 87.67
2iw1_A 374 Lipopolysaccharide core biosynthesis protein RFAG; 85.33
1f0k_A 364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 85.09
3otg_A 412 CALG1; calicheamicin, TDP, structural genomics, PS 84.48
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 83.94
1vgv_A 384 UDP-N-acetylglucosamine 2-epimerase; structural ge 83.45
4fzr_A 398 SSFS6; structural genomics, PSI-biology, protein s 83.24
3ia7_A 402 CALG4; glycosysltransferase, calicheamicin, enediy 82.8
1v4v_A 376 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t 82.47
3oti_A 398 CALG3; calicheamicin, TDP, structural genomics, PS 81.71
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus} Back     alignment and structure
Probab=100.00  E-value=3.7e-36  Score=261.04  Aligned_cols=165  Identities=13%  Similarity=0.094  Sum_probs=136.8

Q ss_pred             CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 026131           38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD  115 (243)
Q Consensus        38 ~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d  115 (243)
                      .++++|+|+||||||+|||||||++++++|.+|+++|+|+|+.+.  .++.|++|+++|+++||+  +.+.+|+|||.. 
T Consensus         2 ~~~~vL~v~aHPDDe~l~~Ggtia~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv--~~~~~L~~~D~~-   78 (242)
T 2ixd_A            2 SGLHILAFGAHADDVEIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGV--KTRLNLAMPDRG-   78 (242)
T ss_dssp             CCCSEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTC--CEEEEEEECTTC-
T ss_pred             CCccEEEEEeCCChHHHhHHHHHHHHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCC--CeEEECCCCCCC-
Confidence            356899999999999999999999999999999999999999863  568999999999999999  467899999963 


Q ss_pred             CccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCC------------CceEEeeehhh
Q 026131          116 GFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSE------------RNIEAWELMTT  183 (243)
Q Consensus       116 ~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~------------~~~~~ye~~s~  183 (243)
                       +.   +.+++++.|+++|++++||+|+||+  +.|+|+||+++++++.+|+...+.            +.++.|+.  +
T Consensus        79 -~~---~~~~~~~~l~~~ir~~~PdvV~t~~--~~d~H~DH~~~~~~v~~A~~~a~~~~~~~~~~~~~~~~l~~y~~--~  150 (242)
T 2ixd_A           79 -LY---MKEEYIREIVKVIRTYKPKLVFAPY--YEDRHPDHANCAKLVEEAIFSAGIRKYMPELSPHRVESFYNYMI--N  150 (242)
T ss_dssp             -CC---CCHHHHHHHHHHHHHHCCSEEEEEC--SCSSSHHHHHHHHHHHHHHHHHTCTTSSTTSCCCCCSEEEEECC--S
T ss_pred             -CC---ChHHHHHHHHHHHHHcCCCEEEECC--CCCCChhHHHHHHHHHHHHHHcCCccccCcCCCCCcceEEEEec--c
Confidence             22   4578999999999999999999995  468999999999999999754321            12222221  0


Q ss_pred             hhhhccCCchhHHHHHHhhhcccCCceeEEEeCCH--HHHHHHHHhchhhHhhh
Q 026131          184 NILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHP--KKSFLAMSQHHSQWVWC  235 (243)
Q Consensus       184 ~~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~--~~k~~Am~~H~SQ~~wf  235 (243)
                                            ....|+++||++.  ++|++||+||+||+.+.
T Consensus       151 ----------------------~~~~p~~~vdis~~~~~K~~Al~~h~SQ~~~~  182 (242)
T 2ixd_A          151 ----------------------GFHKPNFCIDISEYLSIKVEALEAYESQFSTG  182 (242)
T ss_dssp             ----------------------SCCCCSEEEECGGGHHHHHHHHHTCHHHHCCT
T ss_pred             ----------------------CCCCCCEEEECcHHHHHHHHHHHHHHHhccCC
Confidence                                  1234688999874  79999999999999864
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A* Back     alignment and structure
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus} Back     alignment and structure
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1 Back     alignment and structure
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A* Back     alignment and structure
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 243
d1q74a_297 c.134.1.1 (A:) 1D-myo-inosityl 2-acetamido-2-deoxy 6e-16
d1uana_227 c.134.1.1 (A:) Hypothetical protein TT1542 {Thermu 1e-10
>d1q74a_ c.134.1.1 (A:) 1D-myo-inosityl 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase MshD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: LmbE-like
superfamily: LmbE-like
family: LmbE-like
domain: 1D-myo-inosityl 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase MshD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 73.1 bits (178), Expect = 6e-16
 Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 30/152 (19%)

Query: 38  DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNA----------------D 81
           +   +L V AHPDDES+    TI + TSR   +H++  + G                  D
Sbjct: 1   ETPRLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHAD 60

Query: 82  GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ-----DGFDKL-------WNHKSLAKI 129
            +G  R  EL  A   L +       L            G D+         + +     
Sbjct: 61  QLGGYRIGELTAALRALGVS--APIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGA 118

Query: 130 VEEEVVNCSIDLIITFDNYGVSGHCNHRDVHH 161
           +   +      +++T+D  G  GH +H   H 
Sbjct: 119 LVAIIRELRPHVVVTYDPNGGYGHPDHVHTHT 150
>d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
d1uana_227 Hypothetical protein TT1542 {Thermus thermophilus 100.0
d1q74a_297 1D-myo-inosityl 2-acetamido-2-deoxy-alpha-D-glucop 100.0
d1efva1188 Large, alpha subunit of electron transfer flavopro 92.15
d3clsd1192 Large, alpha subunit of electron transfer flavopro 90.15
d3clsc1262 Small, beta subunit of electron transfer flavoprot 81.27
>d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: LmbE-like
superfamily: LmbE-like
family: LmbE-like
domain: Hypothetical protein TT1542
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.2e-38  Score=267.07  Aligned_cols=174  Identities=16%  Similarity=0.110  Sum_probs=135.6

Q ss_pred             CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC--CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 026131           40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD--GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF  117 (243)
Q Consensus        40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~--~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~  117 (243)
                      ++||+|+||||||++||||||++++++|.+|+++++|+|+.+  +..+.|++|+.+|++.||+  +.+.+|++||.+  +
T Consensus         2 ~~VLvi~aHPDDe~lg~GGtiak~~~~G~~V~vv~~T~G~~~~~~~~~~R~~E~~~a~~~lG~--~~~~~l~~~d~~--l   77 (227)
T d1uana_           2 LDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGL--DFRGNLGFPDGG--L   77 (227)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTTCCSCHHHHHHHHHHHHHHHTC--SEEEEEEECTTC--C
T ss_pred             ceEEEEEeCCChHHHHHHHHHHHHHHcCCeEEEEEEeCCCCCCCCchhhhHHHHHhhhhhccc--chheeeeecccc--c
Confidence            489999999999999999999999999999999999999875  4678999999999999999  678999999854  2


Q ss_pred             cccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCCCc-eEEeeehhhhhhhccCCchhHH
Q 026131          118 DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERN-IEAWELMTTNILRKYSGPLDIW  196 (243)
Q Consensus       118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~~~-~~~ye~~s~~~~~~y~~~~d~~  196 (243)
                         .+..++...|+++|++++||+|+||  ++.|+|+||+.+++++.+|++..+.+. ...++......+..|..     
T Consensus        78 ---~~~~~~~~~l~~~i~~~~PdiV~t~--~~~d~H~DH~~~~~av~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----  147 (227)
T d1uana_          78 ---ADVPEQRLKLAQALRRLRPRVVFAP--LEADRHPDHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPG-----  147 (227)
T ss_dssp             ---CCCHHHHHHHHHHHHHHCEEEEEEE--CSCCSSHHHHHHHHHHHHHHHHHTCTTSSCSSCCCCCSEEEEECC-----
T ss_pred             ---ccchhhhhhhhhheecccccEEEec--CccccccchhhHHHHHHHHHHHhcCCccccccccccceeeeeccc-----
Confidence               2456788899999999999999999  567899999999999999976432211 11111110000000110     


Q ss_pred             HHHHhhhcccCCceeEEEeCCH--HHHHHHHHhchhhHhhh
Q 026131          197 LSILSATQYRRGQVHCLLNEHP--KKSFLAMSQHHSQWVWC  235 (243)
Q Consensus       197 ~~~~~~~~~~~~~~~~~v~~~~--~~k~~Am~~H~SQ~~wf  235 (243)
                              .....|+++||++.  ++|++||.||+||+.+.
T Consensus       148 --------~~~f~Pn~~vdIs~~~~~K~~Al~~~~SQ~~~~  180 (227)
T d1uana_         148 --------NHPFAPSFLVKISAFIDQWEAAVLAYRSQFTGE  180 (227)
T ss_dssp             --------SSCCCCSEEEECGGGHHHHHHHHHTCHHHHC--
T ss_pred             --------cccCCCCeEEechHHHHHHHHHHHHHHHHhccc
Confidence                    01235799999984  79999999999999643
>d1q74a_ c.134.1.1 (A:) 1D-myo-inosityl 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase MshD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1efva1 c.26.2.3 (A:20-207) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure