Citrus Sinensis ID: 026138

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MSEQGESTPTVAAAPAITTRTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mseqgestptvaaapaittRTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVsarehpaaaTGVALTAGllfmrgprrflfrhtfgrlrsEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV
Flexible Loop (DISEMBL)
mseqgestptvaaapaittrtkDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKnvnelnlsgelmkkESKKLLERAALAEKEMIrgetelknagnqvQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV
Low Complexity Region (SEG)
MSEQGEStptvaaapaittrtKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPaaatgvaltagllFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNlsgelmkkeskklleRAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV
Disordered region (IsUnstruct)
*****************************************************STYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRA*************************************************AKQVYKVETQ***L***********************************************
Disordered Region (DISOPRED)
********************TKDAKEWVEDLQRSVIQSKD********************QDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAM*****************************ALAE*EM*****************************DLMEGLREIPGREA**********************KQIMKISELGVSV
Disordered Region (DISEMBL)
***********AAAPAITTRTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV
Disordered Region (DISPRO)
*************APAITTRTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEQGESTPTVAAAPAITTRTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
255564796	265	conserved hypothetical protein [Ricinus	0.913	0.837	0.680	2e-84
224056923	239	predicted protein [Populus trichocarpa]	0.897	0.912	0.688	2e-81
225435822	246	PREDICTED: uncharacterized protein LOC10	0.983	0.971	0.665	2e-81
449452634	241	PREDICTED: uncharacterized protein LOC10	0.884	0.892	0.674	8e-81
297803456	263	hypothetical protein ARALYDRAFT_913923 [	1.0	0.923	0.562	9e-81
30687213	263	uncharacterized protein [Arabidopsis tha	1.0	0.923	0.566	1e-75
357475067	266	hypothetical protein MTR_4g083250 [Medic	0.835	0.763	0.650	6e-70
356576943	230	PREDICTED: uncharacterized protein LOC10	0.855	0.904	0.627	2e-68
255638282	230	unknown [Glycine max]	0.855	0.904	0.623	2e-67
449452636	217	PREDICTED: uncharacterized protein LOC10	0.728	0.815	0.700	7e-67

>gi|255564796|ref|XP_002523392.1| conserved hypothetical protein [Ricinus communis] gi|223537342|gb|EEF38971.1| conserved hypothetical protein [Ricinus communis]

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/222 (68%), Positives = 188/222 (84%)

Query: 22  KDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSK 81
           K ++ WVEDLQR+VI+SKDSAIRSARS   NSS+ L++LQD V   +S ++TYED+FF+K
Sbjct: 44  KGSENWVEDLQRTVIESKDSAIRSARSLHQNSSSRLRSLQDHVPQALSLFRTYEDSFFNK 103

Query: 82  VKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELN 141
           +K+EL+ AREHP    GVA+TAG L MRGPRRFLFRHTFGR +SEEA F++ EKNV ELN
Sbjct: 104 IKEELMIAREHPVEVVGVAVTAGFLLMRGPRRFLFRHTFGRFQSEEARFLKTEKNVKELN 163

Query: 142 LSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLR 201
           LS +LMK ES+KLLERA+LAEK+M  G TEL +AG+Q+QRLAK +YKVETQ A LM+GLR
Sbjct: 164 LSVDLMKNESRKLLERASLAEKDMKHGHTELMDAGSQIQRLAKSIYKVETQVAGLMDGLR 223

Query: 202 EIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV 243
           EIPGR+ALKLRAEVA+MAS LK+ ++++DK+IMKISELG+ V
Sbjct: 224 EIPGRDALKLRAEVATMASALKKHKSVLDKRIMKISELGIPV 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056923|ref|XP_002299091.1| predicted protein [Populus trichocarpa] gi|222846349|gb|EEE83896.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/218 (68%), Positives = 186/218 (85%)

Query: 26  EWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDE 85
           E +EDLQR+V +SKDSAIRSA SFQ +SS++L++ QD V   +S++ +YE+ FFSKVK+E
Sbjct: 22  EVMEDLQRTVKESKDSAIRSALSFQQSSSSHLRSFQDHVPEAISKFNSYENTFFSKVKEE 81

Query: 86  LVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGE 145
           L++A++HPAAA G+ LTAGL  MRGPRRFLFR+T GR +SEEA F+RAEKNV E + S +
Sbjct: 82  LLTAKDHPAAAIGLTLTAGLFLMRGPRRFLFRNTLGRFQSEEAQFLRAEKNVKEFSFSVD 141

Query: 146 LMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG 205
           LMKKES+KLLERA+LAEKEM  G TEL + G Q+QRLAK VYKVET+ ADLM+GLREIPG
Sbjct: 142 LMKKESRKLLERASLAEKEMKNGHTELLDTGIQIQRLAKSVYKVETKTADLMDGLREIPG 201

Query: 206 REALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV 243
           R+ALKLRAEVASM SLLK+QRA++DK+IMKISELG+ V
Sbjct: 202 RDALKLRAEVASMTSLLKQQRAVLDKRIMKISELGIPV 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435822|ref|XP_002285769.1| PREDICTED: uncharacterized protein LOC100250144 [Vitis vinifera] gi|297746514|emb|CBI16570.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 163/245 (66%), Positives = 193/245 (78%), Gaps = 6/245 (2%)

Query: 5   GESTPTVAAAPAI--TTRTKDAKEW----VEDLQRSVIQSKDSAIRSARSFQHNSSTYLQ 58
            E+TP+ A APA   +   +  K W     EDLQR+V +S DSAIRSA S Q NSS++L+
Sbjct: 2   AEATPSSAPAPADGESISQQQQKPWHISFAEDLQRTVSESADSAIRSALSLQQNSSSHLR 61

Query: 59  TLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRH 118
           +LQ+F+    SQY+TYEDAFF KVKDEL SA+EHP     VA+TAGL+F+RGPRRFLF H
Sbjct: 62  SLQEFIPQMESQYRTYEDAFFKKVKDELTSAKEHPVVVGAVAVTAGLIFLRGPRRFLFHH 121

Query: 119 TFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQ 178
           T GR +SEEA FVRAEKNV ELNLS +LMK ES+KLLERAALAEK+M  G TEL N G+Q
Sbjct: 122 TLGRFQSEEAQFVRAEKNVKELNLSVDLMKNESRKLLERAALAEKDMKCGHTELMNTGSQ 181

Query: 179 VQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISE 238
           ++RLAK V+KVE QAADLM+GLRE PGREALKLR+EVASM SLLK+QR  +DK+IMKISE
Sbjct: 182 LKRLAKTVFKVEAQAADLMDGLRETPGREALKLRSEVASMTSLLKQQRIALDKRIMKISE 241

Query: 239 LGVSV 243
           LGV V
Sbjct: 242 LGVPV 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452634|ref|XP_004144064.1| PREDICTED: uncharacterized protein LOC101216418 isoform 1 [Cucumis sativus] gi|449493570|ref|XP_004159354.1| PREDICTED: uncharacterized LOC101216418 isoform 1 [Cucumis sativus]

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 145/215 (67%), Positives = 180/215 (83%)

Query: 29  EDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVS 88
           EDLQR+V+QSKDSAIRSARSFQ  SS+++++LQDFV    SQ++TYED FF K+ DEL  
Sbjct: 27  EDLQRTVVQSKDSAIRSARSFQQASSSHIRSLQDFVPQATSQFKTYEDTFFRKLTDELKI 86

Query: 89  AREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMK 148
           AREHPAA  GVA+TAGLL MRGPRRFLFRHT GR ++EEA F++AEK+V ELNLS +LMK
Sbjct: 87  AREHPAATIGVAVTAGLLIMRGPRRFLFRHTLGRFQTEEASFLKAEKHVKELNLSVDLMK 146

Query: 149 KESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREA 208
            ESKKLLERAALAEK+M  G  EL NAG+Q+QRL++ +YK E QAADLM+GLREI GR+A
Sbjct: 147 NESKKLLERAALAEKDMKYGHNELMNAGSQIQRLSRSIYKAEAQAADLMDGLREISGRDA 206

Query: 209 LKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV 243
           LKLRAEVASM + LKRQR +++ + MK+S++G+ +
Sbjct: 207 LKLRAEVASMTTFLKRQRTLLENRAMKVSDMGIPL 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803456|ref|XP_002869612.1| hypothetical protein ARALYDRAFT_913923 [Arabidopsis lyrata subsp. lyrata] gi|297315448|gb|EFH45871.1| hypothetical protein ARALYDRAFT_913923 [Arabidopsis lyrata subsp. lyrata]

 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 148/263 (56%), Positives = 199/263 (75%), Gaps = 20/263 (7%)

Query: 1   MSEQGESTPTVAAAPAITTRT--------------------KDAKEWVEDLQRSVIQSKD 40
           MSE   +  T  +APA+ + T                    + A++WV+D QR+V +S D
Sbjct: 1   MSETEATGATDDSAPAVASETAADATVNTAIGVVESVEGAIEGAEKWVDDFQRTVKESTD 60

Query: 41  SAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVA 100
           SA+RSARS + NS++  +++QDF+ H ++QY+TYE+AFFSKV +EL+ A+EHPAA  G+ 
Sbjct: 61  SAMRSARSLRENSTSQFRSIQDFIPHALTQYKTYENAFFSKVTEELIYAKEHPAATVGIG 120

Query: 101 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAAL 160
           + AGL+ MRGPRRFLFRHT GR +SEEA F++AEK+V ELN+S +LMKKES+KLLER AL
Sbjct: 121 VAAGLVLMRGPRRFLFRHTLGRFQSEEAQFLKAEKHVQELNMSVDLMKKESRKLLERTAL 180

Query: 161 AEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMAS 220
           AEK+M RG +EL N+GN + RLAK V+KVE +AADLM+GLR+IPGREA+KLRAEVASM S
Sbjct: 181 AEKDMKRGLSELMNSGNDIHRLAKSVHKVECEAADLMDGLRQIPGREAIKLRAEVASMTS 240

Query: 221 LLKRQRAMMDKQIMKISELGVSV 243
           LL+++R  ++K+IM +SELGV V
Sbjct: 241 LLRQKRIALNKRIMSMSELGVPV 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687213|ref|NP_194371.2| uncharacterized protein [Arabidopsis thaliana] gi|27754660|gb|AAO22774.1| unknown protein [Arabidopsis thaliana] gi|28394053|gb|AAO42434.1| unknown protein [Arabidopsis thaliana] gi|332659795|gb|AEE85195.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/263 (56%), Positives = 200/263 (76%), Gaps = 20/263 (7%)

Query: 1   MSEQGESTPTVAAAPAITTRT--------------------KDAKEWVEDLQRSVIQSKD 40
           MSE   +  T  +APAI T T                    + A++WV DLQR+V +SKD
Sbjct: 1   MSETEATGVTDDSAPAIETETVSDAMEHTAIGVVESVEGAIEGAEKWVGDLQRTVKESKD 60

Query: 41  SAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVA 100
           +A+RSARS + NS++  +++QDF+ H ++QY+TYE+AFFSKV DEL+ A+EHPAAA G+ 
Sbjct: 61  TAMRSARSLRENSTSQFRSIQDFIPHALTQYKTYENAFFSKVTDELIYAKEHPAAAIGIG 120

Query: 101 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAAL 160
           + A L+ MRGPRRFLFR+T GR +SEEA F++AEK+V ELN+S +LMKKES+KLLER AL
Sbjct: 121 VAASLVLMRGPRRFLFRNTLGRFQSEEAQFLKAEKHVQELNMSVDLMKKESRKLLERTAL 180

Query: 161 AEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMAS 220
           AEK+M RG +EL N+GN + RLAK V+K E +AADLM+GLR+IPGR+A+KLRAEVASM S
Sbjct: 181 AEKDMKRGLSELMNSGNDIHRLAKSVHKAECEAADLMDGLRQIPGRDAIKLRAEVASMTS 240

Query: 221 LLKRQRAMMDKQIMKISELGVSV 243
           LL+++R  ++K+IM +S+LGVSV
Sbjct: 241 LLRQKRIALNKRIMGMSDLGVSV 263

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475067|ref|XP_003607819.1| hypothetical protein MTR_4g083250 [Medicago truncatula] gi|355508874|gb|AES90016.1| hypothetical protein MTR_4g083250 [Medicago truncatula] gi|388497698|gb|AFK36915.1| unknown [Medicago truncatula]

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 132/203 (65%), Positives = 164/203 (80%)

Query: 41  SAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVA 100
           SAI SAR+ QHNS+T+ +T Q+F+   VSQY+TYEDAFF+KVKD ++ ARE+PA   G+A
Sbjct: 64  SAIESARTVQHNSTTHFRTFQNFLPGAVSQYRTYEDAFFNKVKDGVMVARENPAIGVGLA 123

Query: 101 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAAL 160
           ++  LL MRGPRRFLFRHT GR +SEEA +  AEKNV +LNLS +L+KKES KLL+R AL
Sbjct: 124 VSTALLVMRGPRRFLFRHTLGRFQSEEARYASAEKNVKDLNLSVDLLKKESIKLLQRTAL 183

Query: 161 AEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMAS 220
           AEKEM  G +EL N G Q+QRLAK  YK E +A DL++ LR+IP REAL LRAEVAS+AS
Sbjct: 184 AEKEMKYGHSELMNTGAQLQRLAKSSYKAEARATDLIDRLRDIPSREALTLRAEVASLAS 243

Query: 221 LLKRQRAMMDKQIMKISELGVSV 243
            LKRQR+++DK+IMKISELG+SV
Sbjct: 244 SLKRQRSVLDKRIMKISELGISV 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576943|ref|XP_003556589.1| PREDICTED: uncharacterized protein LOC100780119 [Glycine max]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/215 (62%), Positives = 167/215 (77%), Gaps = 7/215 (3%)

Query: 29  EDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVS 88
           E+LQRS IQS       AR+ QH+SST+ +  Q+F+   VSQY+TYEDAF +KVKD L+ 
Sbjct: 23  ENLQRSAIQS-------ARTVQHSSSTHFRAFQNFLPEAVSQYRTYEDAFVNKVKDGLMI 75

Query: 89  AREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMK 148
           A+E+PA + GVA++A LL MR PRRFLFRHT GR +SEEA + R EKNV +LNLS +L+K
Sbjct: 76  AKENPAVSAGVAISAALLAMRAPRRFLFRHTLGRFQSEEARYARIEKNVKDLNLSVDLLK 135

Query: 149 KESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREA 208
           KE+ KLL+R  LAEKEM  G TEL +AG Q Q+LAK  YKVET+AADL++ LR IP REA
Sbjct: 136 KENAKLLQRTTLAEKEMKYGHTELVSAGTQFQQLAKSAYKVETRAADLLDKLRYIPSREA 195

Query: 209 LKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV 243
           L LRAEVASMAS LKRQR+ ++K+IMKI+ELGV V
Sbjct: 196 LALRAEVASMASNLKRQRSSLNKRIMKINELGVPV 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638282|gb|ACU19454.1| unknown [Glycine max]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 134/215 (62%), Positives = 165/215 (76%), Gaps = 7/215 (3%)

Query: 29  EDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVS 88
           E+LQRS IQS       AR+ QH+SST+ +  Q+F+   VSQY+TYEDAF +KVKD L+ 
Sbjct: 23  ENLQRSAIQS-------ARTVQHSSSTHFRAFQNFLPEAVSQYRTYEDAFVNKVKDGLMI 75

Query: 89  AREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMK 148
           A+E+PA + GVA++  LL MR PRRFLFRHT GR +SEEA + R EKNV +LNLS +L+K
Sbjct: 76  AKENPAVSAGVAISVALLAMRAPRRFLFRHTLGRFQSEEARYARIEKNVKDLNLSVDLLK 135

Query: 149 KESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREA 208
           KE+ KLL+R  LAEKEM  G TEL +AG Q Q+LAK  YKVET+AADL++ LR IP REA
Sbjct: 136 KENAKLLQRTTLAEKEMKYGHTELVSAGTQFQQLAKSAYKVETRAADLLDKLRYIPSREA 195

Query: 209 LKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV 243
           L LRAEVASMAS LKRQR  ++K+IMKI+ELGV V
Sbjct: 196 LALRAEVASMASNLKRQRFSLNKRIMKINELGVPV 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452636|ref|XP_004144065.1| PREDICTED: uncharacterized protein LOC101216418 isoform 2 [Cucumis sativus] gi|449493572|ref|XP_004159355.1| PREDICTED: uncharacterized LOC101216418 isoform 2 [Cucumis sativus]

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 124/177 (70%), Positives = 148/177 (83%)

Query: 29  EDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVS 88
           EDLQR+V+QSKDSAIRSARSFQ  SS+++++LQDFV    SQ++TYED FF K+ DEL  
Sbjct: 27  EDLQRTVVQSKDSAIRSARSFQQASSSHIRSLQDFVPQATSQFKTYEDTFFRKLTDELKI 86

Query: 89  AREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMK 148
           AREHPAA  GVA+TAGLL MRGPRRFLFRHT GR ++EEA F++AEK+V ELNLS +LMK
Sbjct: 87  AREHPAATIGVAVTAGLLIMRGPRRFLFRHTLGRFQTEEASFLKAEKHVKELNLSVDLMK 146

Query: 149 KESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG 205
            ESKKLLERAALAEK+M  G  EL NAG+Q+QRL++ +YK E QAADLM+GLREI G
Sbjct: 147 NESKKLLERAALAEKDMKYGHNELMNAGSQIQRLSRSIYKAEAQAADLMDGLREISG 203

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2131473	263	AT4G26410 "AT4G26410" [Arabido	0.905	0.836	0.554	5.5e-61
TAIR|locus:2055578	272	AT2G45060 "AT2G45060" [Arabido	0.913	0.816	0.313	3.2e-26

TAIR|locus:2131473 AT4G26410 "AT4G26410" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 122/220 (55%), Positives = 164/220 (74%)

Query:    24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVK 83
             A++WV DLQR+V +SKD+A+RSARS + NS++  +++QDF+ H ++QY+TYE+AFFSKV 
Sbjct:    44 AEKWVGDLQRTVKESKDTAMRSARSLRENSTSQFRSIQDFIPHALTQYKTYENAFFSKVT 103

Query:    84 DELVSAREHPXXXXXXXXXXXXXFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNXX 143
             DEL+ A+EHP              MRGPRRFLFR+T GR +SEEA F++AEK+V ELN  
Sbjct:   104 DELIYAKEHPAAAIGIGVAASLVLMRGPRRFLFRNTLGRFQSEEAQFLKAEKHVQELNMS 163

Query:   144 XXXXXXXXXXXXXRAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 203
                          R ALAEK+M RG +EL N+GN + RLAK V+K E +AADLM+GLR+I
Sbjct:   164 VDLMKKESRKLLERTALAEKDMKRGLSELMNSGNDIHRLAKSVHKAECEAADLMDGLRQI 223

Query:   204 PGREALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV 243
             PGR+A+KLRAEVASM SLL+++R  ++K+IM +S+LGVSV
Sbjct:   224 PGRDAIKLRAEVASMTSLLRQKRIALNKRIMGMSDLGVSV 263

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2055578 AT2G45060 "AT2G45060" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 73/233 (31%), Positives = 117/233 (50%)

Query:    22 KDAKEWVEDL-------QRSVIQSKDSAIRS--ARSFQHNSSTYLQTLQ--DFVLHGVSQ 70
             ++A  W++D        Q+++ ++ DS I +  AR  Q   ++   T Q  D +    S+
Sbjct:    40 ENAASWIDDALRQALVYQKTITETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRDIASE 99

Query:    71 YQTYEDAFFSKVKDELVSAREHPXXXXXXXXXXXXXFMRGPRRFLFRHTFGRLRSEEAMF 130
             Y  YE   F K+KD +  A  HP              ++  RRF++ +T     SEEA+ 
Sbjct:   100 YNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRRFVYYNTVRMFVSEEALL 159

Query:   131 VRAEKNVNELNXXXXXXXXXXXXXXXRAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 190
              RA+  V EL                 A +AE+E IRG  +L+ AG Q++      YK+E
Sbjct:   160 SRADLKVKELRQSMDRLKAESEKLERVATVAEEEFIRGRMKLRQAGKQIRGAISSAYKIE 219

Query:   191 TQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISELGVSV 243
              QAA L + L+E+P REA + R +++  AS +K++R  + K++ KIS  G+SV
Sbjct:   220 KQAAGLKDVLKELPTREASRFRTQISKRASEVKQERNALTKEVNKISNYGISV 272


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.128   0.341    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      243       201   0.00089  111 3  10 22  0.48    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  193 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.71u 0.46s 23.17t   Elapsed:  00:00:02
  Total cpu time:  22.71u 0.46s 23.17t   Elapsed:  00:00:02
  Start:  Tue May 21 02:24:55 2013   End:  Tue May 21 02:24:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	97.32
PRK10404	101	hypothetical protein; Provisional	96.54
PRK10132	108	hypothetical protein; Provisional	95.56
COG4575	104	ElaB Uncharacterized conserved protein [Function u	95.55
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.39
PRK11637	428	AmiB activator; Provisional	94.65
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	94.02
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.7
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.22
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	85.67
COG4942	420	Membrane-bound metallopeptidase [Cell division and	85.63
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	85.56
PRK14160	211	heat shock protein GrpE; Provisional	85.21
PRK14161	178	heat shock protein GrpE; Provisional	84.64
PRK11637	428	AmiB activator; Provisional	84.38
PRK09039	343	hypothetical protein; Validated	82.67
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	82.4

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=97.32  E-value=0.0023  Score=49.12  Aligned_cols=73  Identities=21%  Similarity=0.235  Sum_probs=42.2

Q ss_pred             HHHHHHHHhHhhHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHhhcchhhHHHHHHH
Q 026138           28 VEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDEL----VSAREHPAAATGVALTA  103 (243)
Q Consensus        28 ~e~~qkt~~~s~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv----~~A~~hP~~~~g~a~~a  103 (243)
                      +++++..+.+..|.+-+.+..+++.-...+.++++.+.+..       +.+-.+.++++    ..+++||+.+.|+|+++
T Consensus        11 ~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~V~e~P~~svgiAagv   83 (94)
T PF05957_consen   11 RADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAA-------DQAREQAREAAEQTEDYVRENPWQSVGIAAGV   83 (94)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence            34444444444444444444455544444544444444433       33444433333    47899999999999999


Q ss_pred             hHhh
Q 026138          104 GLLF  107 (243)
Q Consensus       104 g~ll  107 (243)
                      |||+
T Consensus        84 G~ll   87 (94)
T PF05957_consen   84 GFLL   87 (94)
T ss_pred             HHHH
Confidence            9986

>PRK10404 hypothetical protein; Provisional

Probab=96.54  E-value=0.019  Score=45.91  Aligned_cols=77  Identities=19%  Similarity=0.261  Sum_probs=53.5

Q ss_pred             cchHHHHHHHHHhHhhHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHhhcchhhHHH
Q 026138           24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDE----LVSAREHPAAATGV   99 (243)
Q Consensus        24 ~~~w~e~~qkt~~~s~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~g----v~~A~~hP~~~~g~   99 (243)
                      ...-++++..-+.++.|.+-+.+.++++.-...+..+++.+.+..       +.+..+.|+.    -..+++||+-+.|+
T Consensus        14 l~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~-------~~~~~~~k~aa~~td~yV~e~Pw~avGi   86 (101)
T PRK10404         14 LTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQAS-------DSYYYRAKQAVYRADDYVHEKPWQGIGV   86 (101)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            445566677777777777777777777766666666665555444       4444444444    45889999999999


Q ss_pred             HHHHhHhh
Q 026138          100 ALTAGLLF  107 (243)
Q Consensus       100 a~~ag~ll  107 (243)
                      ++++|||+
T Consensus        87 aagvGlll   94 (101)
T PRK10404         87 GAAVGLVL   94 (101)
T ss_pred             HHHHHHHH
Confidence            99999875

>PRK10132 hypothetical protein; Provisional

Probab=95.56  E-value=0.085  Score=42.83  Aligned_cols=76  Identities=14%  Similarity=0.226  Sum_probs=43.8

Q ss_pred             cchHHHHHHHHHhHhhHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHhhcchhhHHH
Q 026138           24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDEL----VSAREHPAAATGV   99 (243)
Q Consensus        24 ~~~w~e~~qkt~~~s~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv----~~A~~hP~~~~g~   99 (243)
                      .+.-+++++..+.++.+.+-+-+..+++.=...+...++.       +...++. ..+.|+.+    ..+++||+.++|+
T Consensus        21 l~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~-------l~~~~~~-~~~~~~a~~~~~~~V~~~Pw~svgi   92 (108)
T PRK10132         21 VNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRAR-------MHGRTRV-QQAARDAVGCADTFVRERPWCSVGT   92 (108)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-------HhhhHHH-HHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            3344555555555555555555555554444444444443       3333442 23334444    3678899999999


Q ss_pred             HHHHhHhh
Q 026138          100 ALTAGLLF  107 (243)
Q Consensus       100 a~~ag~ll  107 (243)
                      ++++|||+
T Consensus        93 aagvG~ll  100 (108)
T PRK10132         93 AAAVGIFI  100 (108)
T ss_pred             HHHHHHHH
Confidence            99988875

>COG4575 ElaB Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.038  Score=45.14  Aligned_cols=77  Identities=25%  Similarity=0.291  Sum_probs=51.0

Q ss_pred             cchHHHHHHHHHhHhhHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHhhcchhhHHH
Q 026138           24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELV----SAREHPAAATGV   99 (243)
Q Consensus        24 ~~~w~e~~qkt~~~s~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv~----~A~~hP~~~~g~   99 (243)
                      ...-+|++..-+.++-+-|-+-+.+|+..--+-+.++++-+.+..       |.+....|+++.    ++.+||+-++|+
T Consensus        17 l~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~-------d~v~~~sk~a~~~tD~yV~e~PWq~VGv   89 (104)
T COG4575          17 LQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG-------DAVVQRSKAAADATDDYVRENPWQGVGV   89 (104)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            334455555555566555666666677655555555555554443       666667666664    889999999999


Q ss_pred             HHHHhHhh
Q 026138          100 ALTAGLLF  107 (243)
Q Consensus       100 a~~ag~ll  107 (243)
                      ++++|||+
T Consensus        90 aAaVGlll   97 (104)
T COG4575          90 AAAVGLLL   97 (104)
T ss_pred             HHHHHHHH
Confidence            99999875

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.39  E-value=1.4  Score=37.03  Aligned_cols=133  Identities=14%  Similarity=0.179  Sum_probs=76.2

Q ss_pred             chhhHHHHHHHhHhhccchhHHHHHHhhh-hhccHH-------HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 026138           93 PAAATGVALTAGLLFMRGPRRFLFRHTFG-RLRSEE-------AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKE  164 (243)
Q Consensus        93 P~~~~g~a~~ag~lll~gpRrfL~r~Tlg-rf~SEE-------all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E  164 (243)
                      +.+.+++..++|++++..--.++...... ..+.+.       .-+...+....++.+.++.+.+....+......-+++
T Consensus        38 s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~  117 (191)
T PF04156_consen   38 SFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKED  117 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555556677666655555433322 222211       2445555556666666666666666666666666666


Q ss_pred             HhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138          165 MIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQI  233 (243)
Q Consensus       165 ~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR~aL~k~i  233 (243)
                      +...+..++.....++.+-.....+++....|.        .+-.+.+.++..+...++.-+..++.-.
T Consensus       118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~  178 (191)
T PF04156_consen  118 LQELRELLKSVEERLDSLDESIKELEKEIRELQ--------KELQDSREEVQELRSQLERLQENLQQLE  178 (191)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666667777777777777777777777777666        4444455555555555554444433333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK11637 AmiB activator; Provisional

Probab=94.65  E-value=2  Score=40.87  Aligned_cols=94  Identities=12%  Similarity=0.170  Sum_probs=49.7

Q ss_pred             HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHH
Q 026138          132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKL  211 (243)
Q Consensus       132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~L  211 (243)
                      ..+.+.+++++.++.++++++.+.+.....+.++..=..+|..+..+|..+-..+-.++...               ..+
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei---------------~~l  108 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI---------------DEL  108 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Confidence            34555555555555555555555555555555544444444444444444333333333332               345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026138          212 RAEVASMASLLKRQRAMMDKQIMKISELG  240 (243)
Q Consensus       212 RaeVAs~as~lk~qR~aL~k~i~KIs~~G  240 (243)
                      ..++..+-.++..++..|.+++.-+-..|
T Consensus       109 ~~eI~~~q~~l~~~~~~l~~rlra~Y~~g  137 (428)
T PRK11637        109 NASIAKLEQQQAAQERLLAAQLDAAFRQG  137 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            55666666677777777776666655544

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=94.02  E-value=2.4  Score=37.92  Aligned_cols=118  Identities=17%  Similarity=0.232  Sum_probs=93.6

Q ss_pred             hccchhHHHH---------HHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHH
Q 026138          107 FMRGPRRFLF---------RHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGN  177 (243)
Q Consensus       107 ll~gpRrfL~---------r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~  177 (243)
                      .+|.|.+++|         +.-.+.+..-...+...+..+..|...++.+.....+....+......-.+-+..-..-..
T Consensus        15 ~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~   94 (264)
T PF06008_consen   15 AWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQ   94 (264)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999988         2333444445557888888888888888888888888888877777777777777777777


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHH
Q 026138          178 QVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKR  224 (243)
Q Consensus       178 qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~  224 (243)
                      .|+.+...|-.+-.++.+|=...-.+|+.+-.+...|+-.|..+++.
T Consensus        95 ~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~  141 (264)
T PF06008_consen   95 FIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRK  141 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888888888777777789999999999999999998854

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.70  E-value=2.1  Score=39.25  Aligned_cols=123  Identities=16%  Similarity=0.268  Sum_probs=76.6

Q ss_pred             HHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHh--HHHHHHHHHHHHHHHhhH
Q 026138          116 FRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNA--GNQVQRLAKQVYKVETQA  193 (243)
Q Consensus       116 ~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~a--g~qiq~l~ss~yK~E~~A  193 (243)
                      ++..+-..+   +.+.++-..+..++..++.++++...++....-..+.+.+++.+|.++  -+++..|-..++..+.+.
T Consensus        29 ~~~~l~k~~---~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~  105 (239)
T COG1579          29 IRKALKKAK---AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI  105 (239)
T ss_pred             hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            344444444   345555566666666666666666666666666666666666666332  245555555555555555


Q ss_pred             HHHHHhhccCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 026138          194 ADLMEGLREIP------GREALKLRAEVASMASLLKRQRAMMDKQIMKISELGV  241 (243)
Q Consensus       194 ~gL~d~Lr~lP------sreA~~LRaeVAs~as~lk~qR~aL~k~i~KIs~~GV  241 (243)
                      ..|.|.|.++-      ..+...++.++..+-..+...+..++.++.+|-+-|.
T Consensus       106 ~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~  159 (239)
T COG1579         106 NSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ  159 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555443      3356778888888888888888888888888876654

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.22  E-value=17  Score=29.79  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=46.1

Q ss_pred             HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH
Q 026138          129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV  186 (243)
Q Consensus       129 ll~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~  186 (243)
                      .-.....+...+...++.+.+..++|.++....|.++.--..+.++...+++++....
T Consensus        53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~  110 (151)
T PF11559_consen   53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL  110 (151)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556777788888888889999999999999988888888888888888775544

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=85.67  E-value=17  Score=36.10  Aligned_cols=104  Identities=15%  Similarity=0.196  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhHHHHHHhH-----HhhHHHHHHHHHHHHHHHHHHhhhH--HHHHHhHHHHHHHHHHHHHHHhhHHHHHHh
Q 026138          127 EAMFVRAEKNVNELNLSG-----ELMKKESKKLLERAALAEKEMIRGE--TELKNAGNQVQRLAKQVYKVETQAADLMEG  199 (243)
Q Consensus       127 Eall~~Ae~~v~eL~~sv-----dl~k~Es~KL~eraa~AE~E~~RGr--tkLr~ag~qiq~l~ss~yK~E~~A~gL~d~  199 (243)
                      ++|+..+|+-||+|..-+     .-...|.+..++|+..|...|..=|  ..+-.-.++......-+.+.|.+-..+.-.
T Consensus       222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae  301 (434)
T PRK15178        222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE  301 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999997643     3344444444444444444443211  112233455666688888999988888877


Q ss_pred             hccC-----Cch-HHHHHHHHHHHHHHHHHHHHHHHH
Q 026138          200 LREI-----PGR-EALKLRAEVASMASLLKRQRAMMD  230 (243)
Q Consensus       200 Lr~l-----Psr-eA~~LRaeVAs~as~lk~qR~aL~  230 (243)
                      |..|     |.. +-..|+++|+.+-.++..+|.-|.
T Consensus       302 L~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~  338 (434)
T PRK15178        302 YAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS  338 (434)
T ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence            7755     333 667789999999999998888774

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=85.63  E-value=33  Score=34.17  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=54.6

Q ss_pred             hhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhc
Q 026138          122 RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLR  201 (243)
Q Consensus       122 rf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr  201 (243)
                      .+.++ .-++..+++.+.+..++...+.+.++|++.+.-.|.++..=...|+++...+       +++++.-..+-+.|.
T Consensus        33 ~~a~~-~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l-------~~~~~~I~~~~~~l~  104 (420)
T COG4942          33 AAADD-KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDL-------KKLRKQIADLNARLN  104 (420)
T ss_pred             HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHhhHHHHHHHHH
Confidence            34444 6678899999999999999999999998888888877766555555555555       455555555555555


Q ss_pred             cCCchH
Q 026138          202 EIPGRE  207 (243)
Q Consensus       202 ~lPsre  207 (243)
                      .|+..+
T Consensus       105 ~l~~q~  110 (420)
T COG4942         105 ALEVQE  110 (420)
T ss_pred             HHHHHH
Confidence            555555

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=85.56  E-value=26  Score=31.15  Aligned_cols=89  Identities=26%  Similarity=0.333  Sum_probs=67.5

Q ss_pred             HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch-
Q 026138          128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR-  206 (243)
Q Consensus       128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr-  206 (243)
                      ..+..++.++.+....+..+..++.+..+|+..+|.....=...|+..+..|++|--+.-+....-..+-+.++.|..+ 
T Consensus       106 ~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~l  185 (237)
T PF00261_consen  106 RRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKL  185 (237)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            5667788888899999999999999999999999999999999999999999998766655555544455555555444 


Q ss_pred             HHHHHHHHHH
Q 026138          207 EALKLRAEVA  216 (243)
Q Consensus       207 eA~~LRaeVA  216 (243)
                      .-..-|++.|
T Consensus       186 keaE~Rae~a  195 (237)
T PF00261_consen  186 KEAENRAEFA  195 (237)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3334444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK14160 heat shock protein GrpE; Provisional

Probab=85.21  E-value=22  Score=32.20  Aligned_cols=75  Identities=16%  Similarity=0.152  Sum_probs=46.8

Q ss_pred             cHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhcc
Q 026138          125 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLRE  202 (243)
Q Consensus       125 SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~  202 (243)
                      |+|+.+...+..+..|...++.++.+...|.++..-+..||       -+..+-.++-..  .-|..++-+..|+..+..
T Consensus        51 ~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aef-------eN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn  123 (211)
T PRK14160         51 SNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEY-------DNYRKRTAKEKEGIYSDACEDVLKELLPVLDN  123 (211)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence            45556666666666666666666666666666555554444       444443333322  357788899999988888


Q ss_pred             CCch
Q 026138          203 IPGR  206 (243)
Q Consensus       203 lPsr  206 (243)
                      |=..
T Consensus       124 LerA  127 (211)
T PRK14160        124 LERA  127 (211)
T ss_pred             HHHH
Confidence            7654

>PRK14161 heat shock protein GrpE; Provisional

Probab=84.64  E-value=23  Score=31.03  Aligned_cols=78  Identities=18%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             ccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccC
Q 026138          124 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI  203 (243)
Q Consensus       124 ~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~l  203 (243)
                      .+|+.+..-++.-|+.++..++.++.|...+.++..-+..||..=|-...   ++...  -.-|..++-+..|+..+..|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~---ke~~~--~~~~a~~~~~~~LLpv~Dnl   82 (178)
T PRK14161          8 NNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE---KARDE--AKDYAIATFAKELLNVSDNL   82 (178)
T ss_pred             ccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHhhHHhHH
Confidence            36888889999999999999988888888888777666666655443222   22222  23477888999998888777


Q ss_pred             Cch
Q 026138          204 PGR  206 (243)
Q Consensus       204 Psr  206 (243)
                      =..
T Consensus        83 erA   85 (178)
T PRK14161         83 SRA   85 (178)
T ss_pred             HHH
Confidence            543

>PRK11637 AmiB activator; Provisional

Probab=84.38  E-value=39  Score=32.30  Aligned_cols=63  Identities=6%  Similarity=0.061  Sum_probs=46.7

Q ss_pred             HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 026138          128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE  190 (243)
Q Consensus       128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E  190 (243)
                      .-++..+.++..+...++....++..+...+...++++..-..+|.....++...+..+|+.-
T Consensus        75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g  137 (428)
T PRK11637         75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQG  137 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            345555666666666777777777777777777788888888888888888888888888843

>PRK09039 hypothetical protein; Validated

Probab=82.67  E-value=12  Score=35.32  Aligned_cols=76  Identities=18%  Similarity=0.216  Sum_probs=65.9

Q ss_pred             hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHH-HHHHHhhHHHH
Q 026138          121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ-VYKVETQAADL  196 (243)
Q Consensus       121 grf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss-~yK~E~~A~gL  196 (243)
                      ..+..+.+....+...|.-|++-|+.+++.+..|+..+..+|.+-.--+.++..-+..|+..+.. +-..++=...+
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~  199 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            77888999999999999999999999999999999999999999988888999999999888744 55555554445

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=82.40  E-value=16  Score=27.92  Aligned_cols=49  Identities=20%  Similarity=0.198  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhHhhccc
Q 026138           59 TLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRG  110 (243)
Q Consensus        59 ~~~~~l~~~~sqy~~yEd~~f~kiK~gv~~A~~hP~~~~g~a~~ag~lll~g  110 (243)
                      ++.+..+.+..+++...+..=..|++==..+   =++++|+++.+|+|+=|+
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~s---vgiAagvG~llG~Ll~RR   94 (94)
T PF05957_consen   46 RAEDAADQAREQAREAAEQTEDYVRENPWQS---VGIAAGVGFLLGLLLRRR   94 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHChHHH---HHHHHHHHHHHHHHHhCC
Confidence            3444455555555555555444454422222   257889999999988653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 38/320 (11%), Positives = 76/320 (23%), Gaps = 120/320 (37%)

Query: 23  DAKEWVEDLQRSVI---------QSKDSAIRSARSF----QHNSSTY-------LQTLQD 62
           D K+ V+D+ +S++          SKD+   + R F                  L+    
Sbjct: 34  DCKD-VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 63  FVLHGVS-----------QYQTYEDAFFS---KVKDELVSAREHPAAATGVALTAGLLFM 108
           F++  +             Y    D  ++         VS R  P       L   LL +
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYL----KLRQALLEL 147

Query: 109 RGPRRFLFRH-------------------------------TFGRLRSEEA-------MF 130
           R P + +                                        S E        + 
Sbjct: 148 R-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 131 VRAEKNVNELN-------LSGELMKKESKKLLERAALAE----------KEMIRG----- 168
            + + N    +       L    ++ E ++LL+                 +         
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 169 ----ETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASM-ASLLK 223
                T  K   + +         ++         L      E   L  +        L 
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLD----HHSMTLTP---DEVKSLLLKYLDCRPQDLP 319

Query: 224 RQRAMMDKQIMKISELGVSV 243
           R       +++  +   +S+
Sbjct: 320 R-------EVLTTNPRRLSI 332

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	90.98
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	83.45
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	82.32
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	81.21
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	80.6

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=90.98  E-value=6.5  Score=33.81  Aligned_cols=102  Identities=12%  Similarity=0.163  Sum_probs=51.7

Q ss_pred             HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHH--HHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHH
Q 026138          132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGET--ELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL  209 (243)
Q Consensus       132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrt--kLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~  209 (243)
                      .+...+++++..+..+..++..+..++.-.++.+..|.+  .+.+-.++|..+...+...|.....+|+.+..+-. +--
T Consensus        50 ~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~-~l~  128 (256)
T 3na7_A           50 NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE-KQE  128 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            333344444444444444444444444444444433332  23344557777777777777777777777655422 222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138          210 KLRAEVASMASLLKRQRAMMDKQIM  234 (243)
Q Consensus       210 ~LRaeVAs~as~lk~qR~aL~k~i~  234 (243)
                      .+..+++.+-..+...+..++..+.
T Consensus       129 ~~~~~l~~~~~~l~~~~~~~~~~~~  153 (256)
T 3na7_A          129 DLKKEMLELEKLALELESLVENEVK  153 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555554443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=83.45  E-value=15  Score=30.58  Aligned_cols=83  Identities=27%  Similarity=0.296  Sum_probs=57.9

Q ss_pred             HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch-HH
Q 026138          130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR-EA  208 (243)
Q Consensus       130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr-eA  208 (243)
                      ...|+.++.+...    +-+++.+-++|+..||....-=-..|+.+|+.|++|--+--|...+=..+-+.++.|-.+ ..
T Consensus        13 ae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKE   88 (155)
T 2efr_A           13 LSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE   88 (155)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777776655    888999999999999999888888999999999999666555544444444444444433 33


Q ss_pred             HHHHHHHH
Q 026138          209 LKLRAEVA  216 (243)
Q Consensus       209 ~~LRaeVA  216 (243)
                      ..-|++.|
T Consensus        89 AE~RAE~A   96 (155)
T 2efr_A           89 AETRAEFA   96 (155)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            34444444

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=82.32  E-value=18  Score=30.14  Aligned_cols=84  Identities=17%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             hhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 026138          111 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE  190 (243)
Q Consensus       111 pRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E  190 (243)
                      .|.--|-..+.-+.   ..++.|+.+.+.---+|.-+.+++.+|++.+......+..=.-.|.++-.+|.++..-.|-.+
T Consensus        70 qrEd~yEeqIk~L~---~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~  146 (155)
T 2efr_A           70 QKEDKYEEEIKVLS---DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE  146 (155)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            35555666665553   578888888888888999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHH
Q 026138          191 TQAADLM  197 (243)
Q Consensus       191 ~~A~gL~  197 (243)
                      +..+.|+
T Consensus       147 ~~~~~~~  153 (155)
T 2efr_A          147 NEVARLK  153 (155)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9888775

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=81.21  E-value=15  Score=30.01  Aligned_cols=59  Identities=24%  Similarity=0.307  Sum_probs=53.3

Q ss_pred             HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH
Q 026138          128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV  186 (243)
Q Consensus       128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~  186 (243)
                      .+...|+.++.+....+..+.+++.+..+|+-.||.....=...|+..|+.|++|--+-
T Consensus        66 ~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~e  124 (147)
T 2b9c_A           66 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKV  124 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence            45568899999999999999999999999999999999999999999999999985543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=80.60  E-value=17  Score=27.70  Aligned_cols=93  Identities=18%  Similarity=0.233  Sum_probs=67.2

Q ss_pred             HHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHH
Q 026138          137 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVA  216 (243)
Q Consensus       137 v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVA  216 (243)
                      +.-.+..|..++.|.....+|+-.+|.+++.-.-...+...+|.+|-+.+-.+|...-.+-+.|.+.     ..-=.+-.
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea-----~~kLee~e   78 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS-----EDSLLFAE   78 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence            4567888899999999999999999999999999999999999999999988887766666655432     22222223


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 026138          217 SMASLLKRQRAMMDKQIM  234 (243)
Q Consensus       217 s~as~lk~qR~aL~k~i~  234 (243)
                      ..++..-.+-.+|+++|.
T Consensus        79 k~~~~aE~ev~~L~Rriq   96 (101)
T 3u1c_A           79 ENAAKAESEVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444445555555553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00