Citrus Sinensis ID: 026159

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLTAS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHEEEcccccccEEEEEEHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRaflplksttwwpFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFAdrvgkprlfLTDKMQIALAGGLGHGVAHAVFFCLSlltpafgpatfyvdrcpqmPFFLISAIIALAFVTIHTFSMVIAfngyaegnttdqyfVPVVHLVAGMVTLVNfasggcvvgIPLLYILASLILLHCGKMVWRRLTAS
Flexible Loop (DISEMBL)
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLTAS
Low Complexity Region (SEG)
MTVaagigyalialgPSLSLFVAVISKKPFliltvlsstllwlislivlsgiwRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIalagglghgvahavFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGipllyilaslillHCGKMVWRRLTAS
Disordered region (IsUnstruct)
***AAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRL***
Disordered Region (DISOPRED)
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDT*****************KMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRL***
Disordered Region (DISEMBL)
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLTAS
Disordered Region (DISPRO)
*TVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT**
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLTAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q8L9G7	250	Gamma-secretase subunit A	yes	no	1.0	0.968	0.818	1e-115
Q9VQG2	238	Gamma-secretase subunit A	yes	no	0.809	0.823	0.322	4e-16
Q8WW43	257	Gamma-secretase subunit A	yes	no	0.719	0.677	0.304	4e-13
Q5RDM3	257	Gamma-secretase subunit A	yes	no	0.719	0.677	0.299	9e-13
Q8C7N7	257	Gamma-secretase subunit A	yes	no	0.735	0.692	0.302	1e-12
Q8BVF7	265	Gamma-secretase subunit A	no	no	0.834	0.762	0.259	5e-11
Q9DCZ9	258	Putative gamma-secretase	yes	no	0.735	0.689	0.284	7e-11
Q96BI3	265	Gamma-secretase subunit A	no	no	0.834	0.762	0.254	1e-10
Q8JHE9	258	Gamma-secretase subunit A	yes	no	0.834	0.782	0.283	1e-10
Q55FS3	328	Gamma-secretase subunit A	yes	no	0.409	0.301	0.336	3e-06

>sp|Q8L9G7|APH1_ARATH Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2

 Score =  415 bits (1067), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/242 (81%), Positives = 224/242 (92%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLFV+VIS+KPFLILTVLSSTLLWL+SLI+LSG+WR FLPLK
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +  WWP+ALL+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QIALAG
Sbjct: 61  ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT 240
           GYA+GN  DQ  VPV+HL AGM+TLVNFAS GCV+G+PLLY++ASL L+HCGKMVW+RL 
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLL 240

Query: 241 AS 242
            S
Sbjct: 241 ES 242

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9VQG2|APH1_DROME Gamma-secretase subunit Aph-1 OS=Drosophila melanogaster GN=aph-1 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MT+    G   IA GP  +LFV  I+  P  I+ ++++   WL+SL++ S +W A +PLK
Sbjct: 1   MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISS-LWYALIPLK 59

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQI-ALA 119
                  A  ++ SV FQE  R + +++ +  E  L A A+        +TD   I A  
Sbjct: 60  EF----LAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTR-----VTDNKHILAYV 110

Query: 120 GGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAF 179
            GLG G+   +F  +++L    GP T  +    ++ FF+ SA  AL+ + +HTF  VI F
Sbjct: 111 SGLGFGIISGMFALVNVLADMSGPGTMGLKGGTEL-FFVTSAAQALSIILLHTFWSVIFF 169

Query: 180 NGYAEGNTTDQYFVPVVHLVAGMVTLVN 207
           N +   N     +V   HL   ++TL+N
Sbjct: 170 NAFDTNNYIHIGYVVFSHLFVSLITLLN 197

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch. It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q8WW43|APH1B_HUMAN Gamma-secretase subunit APH-1B OS=Homo sapiens GN=APH1B PE=1 SV=3

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 13/187 (6%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
           MT A   G A IA GP+L+L+V  I+ +P  I+ +++    WL+SL++ S +W   R  +
Sbjct: 1   MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII 60

Query: 58  PLKSTTWWPFALLI--ISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
             K      + L+     SV  QE  R  ++K+ K+  + L +       P + L     
Sbjct: 61  DNKDGPTQKYLLIFGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRL----- 115

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVD-RCPQMPFFLISAIIALAFVTIHTFS 174
           +A   GLG G+   VF  ++ L+ + GP T  +    PQ  FFL SA + L  + +H F 
Sbjct: 116 LAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQ--FFLYSAFMTLVIILLHVFW 173

Query: 175 MVIAFNG 181
            ++ F+G
Sbjct: 174 GIVFFDG 180

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A.

Homo sapiens (taxid: 9606)

>sp|Q5RDM3|APH1B_PONAB Gamma-secretase subunit APH-1B OS=Pongo abelii GN=APH1B PE=2 SV=1

 Score = 73.9 bits (180), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 13/187 (6%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
           MT A   G A IA GP+L+L+V  I+ +P  I+ +++    WL+SL++ S +W   R  +
Sbjct: 1   MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII 60

Query: 58  PLKSTTWWPFALLIIS--SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
             K      + L+  +  SV  QE  R  ++++ K+  + L +       P + L     
Sbjct: 61  DNKDGPTQKYLLIFGTFVSVYIQEMFRFAYYRLLKKASEGLKSINPGETAPSMRL----- 115

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVD-RCPQMPFFLISAIIALAFVTIHTFS 174
           +A   GLG G+   VF  ++ L+ + GP T  +    PQ  FFL SA + L  + +H F 
Sbjct: 116 LAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQ--FFLYSAFMTLVIILLHVFW 173

Query: 175 MVIAFNG 181
            ++ F+G
Sbjct: 174 GIVFFDG 180

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A.

Pongo abelii (taxid: 9601)

>sp|Q8C7N7|APH1B_MOUSE Gamma-secretase subunit APH-1B OS=Mus musculus GN=Aph1b PE=2 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 14/192 (7%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
           MT A   G A IA GP+L+L+V  I+  P  ++ +++    WL+SL++ S  W   R   
Sbjct: 1   MTAAVFFGCAFIAFGPALALYVFTIATDPLRVIFLIAGAFFWLVSLLLSSVFWFLVRVIT 60

Query: 58  PLKSTTWWPFALL--IISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
             +      + L+  ++ SV  QE  R+ ++K+ K+  + L +       P + L     
Sbjct: 61  DNRDGPVQNYLLIFGVLLSVCIQELFRLAYYKLLKKASEGLKSINPEETAPSMRL----- 115

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVD-RCPQMPFFLISAIIALAFVTIHTFS 174
           +A   GLG G+   VF  ++ L+ + GP T  +    PQ  FFL SA + L  + +H F 
Sbjct: 116 LAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSPQ--FFLNSAFMTLVVIMLHVFW 173

Query: 175 MVIAFNGYAEGN 186
            V+ F+G  E N
Sbjct: 174 GVVFFDG-CEKN 184

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A.

Mus musculus (taxid: 10090)

>sp|Q8BVF7|APH1A_MOUSE Gamma-secretase subunit APH-1A OS=Mus musculus GN=Aph1a PE=2 SV=2

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 10/212 (4%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPL- 59
           M  A   G   +A GP+ SLF+  ++  P  ++ +++    WL+SL++ S +W   + + 
Sbjct: 1   MGAAVFFGCTFVAFGPAFSLFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVT 60

Query: 60  -KSTTWWPFALLIIS---SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
            +S     + LLI     SV  QE  R  ++K+ K+ ++ L + ++    P        Q
Sbjct: 61  DRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSP----ISIRQ 116

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSM 175
           +A   GL  G+   VF  +++L  A GP    +       +FL SA +  A + +HTF  
Sbjct: 117 MAYVSGLSFGIISGVFSVINILADALGPGVVGI-HGDSPYYFLTSAFLTAAIILLHTFWG 175

Query: 176 VIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVN 207
           V+ F+            V   HL+   +T +N
Sbjct: 176 VVFFDACERRRYWALGLVVGSHLLTSGLTFLN 207

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Mus musculus (taxid: 10090)

>sp|Q9DCZ9|APH1C_MOUSE Putative gamma-secretase subunit APH-1C OS=Mus musculus GN=Aph1c PE=2 SV=1

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 15/193 (7%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
           MT+    G A IA GP+ +L++  I+  P  ++ +++    WL+SL++ S  W   R   
Sbjct: 1   MTLPVFFGCAFIAFGPAFALYLFTIATDPLRVIFLIAGAFFWLVSLLLSSMFWFLVRVIT 60

Query: 58  PLKSTTWWPFALLI--ISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
             +  +   + L+   + SV  QE  R+ ++K+ K+  + L +       P   +   M+
Sbjct: 61  NNRDESVQNYLLIFGALLSVCIQELFRLAYYKLLKKASEGLKSI-----NPEEDIAPSMR 115

Query: 116 -IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVD-RCPQMPFFLISAIIALAFVTIHTF 173
            +A   GLG G+   VF  ++ L+ + GP T  +    PQ  FFL SA + L  + +H F
Sbjct: 116 LLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSPQ--FFLNSAFMTLVVIMLHVF 173

Query: 174 SMVIAFNGYAEGN 186
             V+ F+G  E N
Sbjct: 174 WGVVFFDG-CEKN 185

Potential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein).

Mus musculus (taxid: 10090)

>sp|Q96BI3|APH1A_HUMAN Gamma-secretase subunit APH-1A OS=Homo sapiens GN=APH1A PE=1 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 10/212 (4%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPL- 59
           M  A   G   +A GP+ +LF+  ++  P  ++ +++    WL+SL++ S +W   + + 
Sbjct: 1   MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVT 60

Query: 60  -KSTTWWPFALLIIS---SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
            +S     + LLI     SV  QE  R  ++K+ K+ ++ L + ++    P        Q
Sbjct: 61  DRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSP----ISIRQ 116

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSM 175
           +A   GL  G+   VF  +++L  A GP    +       +FL SA +  A + +HTF  
Sbjct: 117 MAYVSGLSFGIISGVFSVINILADALGPGVVGI-HGDSPYYFLTSAFLTAAIILLHTFWG 175

Query: 176 VIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVN 207
           V+ F+            V   HL+   +T +N
Sbjct: 176 VVFFDACERRRYWALGLVVGSHLLTSGLTFLN 207

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Homo sapiens (taxid: 9606)

>sp|Q8JHE9|APH1B_DANRE Gamma-secretase subunit Aph-1b OS=Danio rerio GN=aph1b PE=2 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 10/212 (4%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPL- 59
           MTVA   G   IA GP+++LF+  I++ P  ++ +++    WL+SL++ S +W   + + 
Sbjct: 1   MTVAVFFGCTFIAFGPAIALFMFTIARDPLRVIFLIAGAFFWLVSLLLSSLVWFITVQIS 60

Query: 60  -KSTTWWPFALLIIS---SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
            K++      LLI     SV  QE  R  ++++ K+  + L A +     P        Q
Sbjct: 61  NKNSATQQRGLLIFGVVLSVLLQEAFRYGYYRLLKKANEGLLALSQEDTMP----ISMRQ 116

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSM 175
           +A   GLG G     F  +++L+ + GP T  +    Q  +F+ SA + LA + +H F  
Sbjct: 117 LAYVSGLGFGFMSGAFSVVNILSDSLGPGTVGIHGESQ-HYFISSAFMTLAIILLHMFWG 175

Query: 176 VIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVN 207
           V+ F             V   HLV   +T VN
Sbjct: 176 VVFFEACERQRWWALGAVVASHLVVSCLTFVN 207

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors. It may represent a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Danio rerio (taxid: 7955)

>sp|Q55FS3|APH1_DICDI Gamma-secretase subunit Aph-1 OS=Dictyostelium discoideum GN=aph1 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 119 AGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIA 178
           A G+G GVA+      S+L  + GP T +   CP +  F++S+II L    +H    V+A
Sbjct: 200 AIGVGSGVAYGFIMFGSILWESTGPGTLFSPACPSVNLFMLSSIITLFMTLLHVVYNVLA 259

Query: 179 FNGYAEGNTTDQYFVPVVHLVAGMVTLVNF--ASGGCVVGI 217
           F GY         FV + H V   +TL+N    +  CV  I
Sbjct: 260 FQGYRSKKYHLVAFVIITHFVTTYLTLLNLPTKTTSCVGSI 300

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors precursor protein. It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
224093158	244	predicted protein [Populus trichocarpa]	1.0	0.991	0.871	1e-119
297826587	250	protein binding protein [Arabidopsis lyr	1.0	0.968	0.822	1e-114
18402667	250	gamma-secretase subunit APH1-like protei	1.0	0.968	0.818	1e-114
21594204	250	unknown [Arabidopsis thaliana]	1.0	0.968	0.814	1e-113
388495380	249	unknown [Lotus japonicus]	1.0	0.971	0.801	1e-112
356538907	249	PREDICTED: gamma-secretase subunit APH1-	1.0	0.971	0.809	1e-109
363807826	249	uncharacterized protein LOC100794637 [Gl	1.0	0.971	0.797	1e-109
225433856	249	PREDICTED: gamma-secretase subunit APH1-	1.0	0.971	0.855	1e-109
388493548	249	unknown [Medicago truncatula]	1.0	0.971	0.789	1e-109
217075164	249	unknown [Medicago truncatula]	1.0	0.971	0.785	1e-108

>gi|224093158|ref|XP_002309813.1| predicted protein [Populus trichocarpa] gi|222852716|gb|EEE90263.1| predicted protein [Populus trichocarpa]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/242 (87%), Positives = 229/242 (94%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLF++VISKKPFLILTVLSSTLLWL+SLIVL+G+WRAFLPLK
Sbjct: 1   MTVAAGIGYALLALGPSLSLFISVISKKPFLILTVLSSTLLWLMSLIVLAGVWRAFLPLK 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           STTWWPFA+LI++SV FQEGLR+LFWKVYKRLED LDAFADR+ KPRLFLTDKM IALAG
Sbjct: 61  STTWWPFAILILTSVSFQEGLRILFWKVYKRLEDILDAFADRLAKPRLFLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFCLSLLTPAFGPATF+VD+C Q+PFFL+SAIIALAFVTIHT SMVIAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFFVDKCSQLPFFLVSAIIALAFVTIHTCSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT 240
           GYAEGN  DQYFVP VHLVAGMVTLVNFASGGCVVGIPLLY +A L LLHCGKMVWRRL+
Sbjct: 181 GYAEGNKVDQYFVPAVHLVAGMVTLVNFASGGCVVGIPLLYFMAILTLLHCGKMVWRRLS 240

Query: 241 AS 242
            +
Sbjct: 241 ET 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826587|ref|XP_002881176.1| protein binding protein [Arabidopsis lyrata subsp. lyrata] gi|297327015|gb|EFH57435.1| protein binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/242 (82%), Positives = 224/242 (92%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLFV+VIS+KPFLILTVLSSTLLWL+SLI+LSG+WR FLPLK
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +  WWP+ALL+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QIALAG
Sbjct: 61  ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT 240
           GYA+GN  DQ  VPV+HL AGM+TLVNFAS GCV+GIPLLY++ASL L+HCGKMVW+RL 
Sbjct: 181 GYAKGNKVDQVIVPVIHLAAGMLTLVNFASEGCVIGIPLLYLVASLTLVHCGKMVWQRLL 240

Query: 241 AS 242
            S
Sbjct: 241 ES 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402667|ref|NP_565724.1| gamma-secretase subunit APH1-like protein [Arabidopsis thaliana] gi|37077331|sp|Q8L9G7.2|APH1_ARATH RecName: Full=Gamma-secretase subunit APH1-like gi|17381290|gb|AAL36063.1| At2g31440/T28P16.7 [Arabidopsis thaliana] gi|20198156|gb|AAD26475.2| unknown protein [Arabidopsis thaliana] gi|20453379|gb|AAM19928.1| At2g31440/T28P16.7 [Arabidopsis thaliana] gi|330253454|gb|AEC08548.1| gamma-secretase subunit APH1-like protein [Arabidopsis thaliana]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/242 (81%), Positives = 224/242 (92%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLFV+VIS+KPFLILTVLSSTLLWL+SLI+LSG+WR FLPLK
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +  WWP+ALL+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QIALAG
Sbjct: 61  ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT 240
           GYA+GN  DQ  VPV+HL AGM+TLVNFAS GCV+G+PLLY++ASL L+HCGKMVW+RL 
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLL 240

Query: 241 AS 242
            S
Sbjct: 241 ES 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594204|gb|AAM65980.1| unknown [Arabidopsis thaliana]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/242 (81%), Positives = 224/242 (92%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLFV+VIS+KPFLILTVLSSTLLWL+SLI+LSG+WR FLPLK
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +  WWP+A+L+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QIALAG
Sbjct: 61  ANVWWPYAVLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT 240
           GYA+GN  DQ  VPV+HL AGM+TLVNFAS GCV+G+PLLY++ASL L+HCGKMVW+RL 
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLL 240

Query: 241 AS 242
            S
Sbjct: 241 ES 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495380|gb|AFK35756.1| unknown [Lotus japonicus]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/242 (80%), Positives = 218/242 (90%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTV+AGIGYAL+ALGPSLS+F++VISKKPFLILTVLSSTLLWLISLIVLSGIWR FLPL 
Sbjct: 1   MTVSAGIGYALVALGPSLSIFISVISKKPFLILTVLSSTLLWLISLIVLSGIWRGFLPLS 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +T WWP+A+LI+SS+ FQEGLR+ FWK+YKRLED LDAFADRV KP LFLTDKM IALAG
Sbjct: 61  TTAWWPYAILILSSIAFQEGLRLFFWKIYKRLEDILDAFADRVSKPHLFLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFC+SLLTPAFGPAT++VDRC Q+PFFL+SA+I LAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDRCSQVPFFLLSALIGLAFVTIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT 240
           GYAEGN  DQYFVP+VH VAG VT+VN A GGC VGIPLLY +  L L+HCG+M WRRLT
Sbjct: 181 GYAEGNKVDQYFVPIVHFVAGAVTMVNLAPGGCTVGIPLLYFVTFLTLIHCGRMAWRRLT 240

Query: 241 AS 242
            +
Sbjct: 241 EN 242

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538907|ref|XP_003537942.1| PREDICTED: gamma-secretase subunit APH1-like [Glycine max]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/242 (80%), Positives = 216/242 (89%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLFV+VISKKPFLILTVLSSTLLWLISLIVLSGIWR  LPL 
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISKKPFLILTVLSSTLLWLISLIVLSGIWRGVLPLS 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +T  WPF +LI SSV FQE LR+ FWK+YKRLED LDAFADRV KP L LTDKM IALAG
Sbjct: 61  TTASWPFGILIFSSVAFQEALRLFFWKIYKRLEDMLDAFADRVSKPHLHLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFC+SLLTPAFGPAT++VDRC ++PFFL+SAIIALAFV IHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDRCSRVPFFLLSAIIALAFVIIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT 240
           GY EGN  DQYFVP+VH+VAGMVTLVN A GGC VGIPLLY++A L L+HCG+MVWR+LT
Sbjct: 181 GYTEGNKVDQYFVPIVHVVAGMVTLVNLAPGGCAVGIPLLYLVAILTLIHCGRMVWRKLT 240

Query: 241 AS 242
            +
Sbjct: 241 EN 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807826|ref|NP_001241927.1| uncharacterized protein LOC100794637 [Glycine max] gi|255642888|gb|ACU22669.1| unknown [Glycine max]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/242 (79%), Positives = 217/242 (89%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAG+GYAL+ALGPSLS+FV+VISKKPFLILTVLSSTLLWLISLIVLSGIWR  LPL 
Sbjct: 1   MTVAAGMGYALLALGPSLSIFVSVISKKPFLILTVLSSTLLWLISLIVLSGIWRGVLPLN 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +T WWPF +LI SSV FQE LR+  WK+YKRL+D LDAFADR+ KP L LTDKM IALAG
Sbjct: 61  TTAWWPFGILIFSSVAFQEALRLFSWKIYKRLQDMLDAFADRISKPHLHLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFC+SLLTPAFGPAT++VDRC ++PFFL+SAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDRCSKVPFFLLSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT 240
           GY+EGN  DQYFVP+VH+VAGMVTLVN A GGC VGIPLLY++A L L+HCG+MVWR+LT
Sbjct: 181 GYSEGNKVDQYFVPIVHVVAGMVTLVNLAPGGCAVGIPLLYLVAILTLIHCGRMVWRKLT 240

Query: 241 AS 242
             
Sbjct: 241 ED 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433856|ref|XP_002264306.1| PREDICTED: gamma-secretase subunit APH1-like [Vitis vinifera] gi|297743767|emb|CBI36650.3| unnamed protein product [Vitis vinifera]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/242 (85%), Positives = 225/242 (92%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTV AGIGYALIALGPS SLFV+VISKKPFLILTVLSSTLLWLISLIVLSG+WRAFLPLK
Sbjct: 1   MTVTAGIGYALIALGPSFSLFVSVISKKPFLILTVLSSTLLWLISLIVLSGVWRAFLPLK 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +T WWP+A+LII+S+ FQEGLR+LFWKVYKRLED LDAFADRV KPRLFLTDKMQIALAG
Sbjct: 61  TTAWWPYAILIITSIAFQEGLRILFWKVYKRLEDILDAFADRVSKPRLFLTDKMQIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHG AHAVFFCLSLLTPAFG ATF+VDRC ++PFFLISA+IALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGGAHAVFFCLSLLTPAFGRATFFVDRCSRIPFFLISALIALAFVTIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT 240
           GYAEGN  DQ FVPVVH+VAGMVTL+N ASGGCV+GIPLLY LA L ++HCGKMVWRRLT
Sbjct: 181 GYAEGNKVDQLFVPVVHMVAGMVTLINLASGGCVIGIPLLYFLAVLTMMHCGKMVWRRLT 240

Query: 241 AS 242
            +
Sbjct: 241 ET 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493548|gb|AFK34840.1| unknown [Medicago truncatula]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/242 (78%), Positives = 218/242 (90%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYALIALGPSLS+FV+VISKKPFLILT+L+STLLWLISLI LSGIWRAFLP  
Sbjct: 1   MTVAAGIGYALIALGPSLSIFVSVISKKPFLILTLLASTLLWLISLIALSGIWRAFLPFN 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
            T  WP+A+LI+SSV FQE LR+ FWK++KRLED LDAFADRV KP LFLTDKM IALAG
Sbjct: 61  PTAVWPYAILILSSVAFQEALRLFFWKIFKRLEDMLDAFADRVSKPHLFLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFC+SLLTPAFGPAT++VD+C ++PFFL+SA+IALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDKCSKIPFFLLSAVIALAFVTIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT 240
           GYAEGN  D+YFVP+VH++AGM+T+VN A GGC VGIPLLY  A L L+HCG+MVWRRLT
Sbjct: 181 GYAEGNKVDRYFVPIVHVIAGMLTMVNLAPGGCAVGIPLLYFTAILTLIHCGRMVWRRLT 240

Query: 241 AS 242
            +
Sbjct: 241 EN 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075164|gb|ACJ85942.1| unknown [Medicago truncatula]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/242 (78%), Positives = 217/242 (89%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYALIALGPSLS+FV+VISKKPFLILT+ +STLLWLISLI LSGIWRAFLP  
Sbjct: 1   MTVAAGIGYALIALGPSLSIFVSVISKKPFLILTLPASTLLWLISLIALSGIWRAFLPFN 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
            T  WP+A+LI+SSV FQE LR+ FWK++KRLED LDAFADRV KP LFLTDKM IALAG
Sbjct: 61  PTAVWPYAILILSSVAFQEALRLFFWKIFKRLEDMLDAFADRVSKPHLFLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFC+SLLTPAFGPAT++VD+C ++PFFL+SA+IALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDKCSKIPFFLLSAVIALAFVTIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVWRRLT 240
           GYAEGN  D+YFVP+VH++AGM+T+VN A GGC VGIPLLY  A L L+HCG+MVWRRLT
Sbjct: 181 GYAEGNKVDRYFVPIVHVIAGMLTMVNLAPGGCAVGIPLLYFTAILTLIHCGRMVWRRLT 240

Query: 241 AS 242
            +
Sbjct: 241 EN 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2061265	250	AT2G31440 [Arabidopsis thalian	1.0	0.968	0.599	2.2e-73
FB|FBgn0031458	238	aph-1 "anterior pharynx defect	0.747	0.760	0.259	1.6e-09
DICTYBASE|DDB_G0267976	328	aph1 "gamma-secretase subunit	0.301	0.222	0.342	2.1e-07
UNIPROTKB|E1C2N9	211	APH1A "Uncharacterized protein	0.545	0.625	0.248	0.00013

TAIR|locus:2061265 AT2G31440 [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 145/242 (59%), Positives = 163/242 (67%)

Query:     1 MTVXXXXXXXXXXXXPSLSLFVAVISKKPFXXXXXXXXXXXXXXXXXXXXXXXRAFLPLK 60
             MTV            PSLSLFV+VIS+KPF                       R FLPLK
Sbjct:     1 MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query:    61 STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIXXXX 120
             +  WWP+ALL+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QI    
Sbjct:    61 ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query:   121 XXXXXXXXXXFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
                       FFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF 
Sbjct:   121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query:   181 GYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGXXXXXXXXXXXXXHCGKMVWRRLT 240
             GYA+GN  DQ  VPV+HL AGM+TLVNFAS GCV+G             HCGKMVW+RL 
Sbjct:   181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLL 240

Query:   241 AS 242
              S
Sbjct:   241 ES 242

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

FB|FBgn0031458 aph-1 "anterior pharynx defective 1" [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 50/193 (25%), Positives = 76/193 (39%)

Query:    16 PSLSLFVAVISKKPFXXXXXXXXXXXXXXXXXXXXXXXRAFLPLKSTTWWPFALLIISSV 75
             P  +LFV  I+  P                         A +PLK       A  ++ SV
Sbjct:    16 PPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWY-ALIPLKEF----LAFGVVFSV 70

Query:    76 GFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIXXXXXXXXXXXXXXFFCL- 134
              FQE  R + +++ +  E  L A A+        +TD   I               F L 
Sbjct:    71 CFQEAFRYIIYRILRSTEQGLHAVAEDTR-----VTDNKHILAYVSGLGFGIISGMFALV 125

Query:   135 SLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVP 194
             ++L    GP T  +    ++ FF+ SA  AL+ + +HTF  VI FN +   N     +V 
Sbjct:   126 NVLADMSGPGTMGLKGGTEL-FFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHIGYVV 184

Query:   195 VVHLVAGMVTLVN 207
               HL   ++TL+N
Sbjct:   185 FSHLFVSLITLLN 197

GO:0005886 "plasma membrane" evidence=NAS

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0004175 "endopeptidase activity" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0267976 aph1 "gamma-secretase subunit Aph-1" [Dictyostelium discoideum (taxid:44689)]

 Score = 117 (46.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 25/73 (34%), Positives = 37/73 (50%)

Query:   135 SLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVP 194
             S+L  + GP T +   CP +  F++S+II L    +H    V+AF GY         FV 
Sbjct:   216 SILWESTGPGTLFSPACPSVNLFMLSSIITLFMTLLHVVYNVLAFQGYRSKKYHLVAFVI 275

Query:   195 VVHLVAGMVTLVN 207
             + H V   +TL+N
Sbjct:   276 ITHFVTTYLTLLN 288

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

UNIPROTKB|E1C2N9 APH1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 109 (43.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 34/137 (24%), Positives = 59/137 (43%)

Query:    71 IISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIXXXXXXXXXXXXXX 130
             ++ SV  QE  R L++K+ ++  + L A ++    P        Q+              
Sbjct:    76 VMFSVLLQEAFRFLYYKLLRKAIEGLVALSEDGCSP----ISIQQMAYVAGVGFGLMSGA 131

Query:   131 FFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQ 190
             F  ++LL  A GP T  +    Q+ +FL SA + +  + +HTF  ++ F+G       + 
Sbjct:   132 FSMINLLADALGPGTVGIHGDSQL-YFLTSAFMTMVLIFLHTFWGILFFHGCENRRWWEI 190

Query:   191 YFVPVVHLVAGMVTLVN 207
               V V+HL     T  N
Sbjct:   191 VAVVVMHLAVSGSTFCN 207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.332   0.142   0.459    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      242       180   0.00092  109 3  11 21  0.43    31
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.27u 0.20s 13.47t   Elapsed:  00:00:00
  Total cpu time:  13.27u 0.20s 13.47t   Elapsed:  00:00:00
  Start:  Fri May 10 00:09:24 2013   End:  Fri May 10 00:09:24 2013

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0030133 "transport vesicle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VQG2	APH1_DROME	No assigned EC number	0.3221	0.8099	0.8235	yes	no
Q8L9G7	APH1_ARATH	No assigned EC number	0.8181	1.0	0.968	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
pfam06105	237	pfam06105, Aph-1, Aph-1 protein	2e-74

>gnl|CDD|218900 pfam06105, Aph-1, Aph-1 protein

 Score =  225 bits (576), Expect = 2e-74
 Identities = 80/245 (32%), Positives = 127/245 (51%), Gaps = 13/245 (5%)

Query: 2   TVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKS 61
           TVA   G   IA GP+L+LF+  I++ P  ++ +++ +  WL+SL++ S +W   +PL+ 
Sbjct: 1   TVAVFFGCTFIAFGPALALFLLTIARDPLRVILLIAGSFFWLVSLLISSLVWFIVVPLRD 60

Query: 62  TTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGG 121
                 A  I+ SV FQE  R  ++++ K+ E+ LD+ AD+   P     DK Q+A   G
Sbjct: 61  K----LAFGILFSVLFQELFRYAYYRLLKKAEEGLDSIADQGQIP----IDKHQLAYVSG 112

Query: 122 LGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNG 181
           LG GV   VF  +++L  + GP T  +       FFL SA I LA + +HTF  VI F+G
Sbjct: 113 LGFGVISGVFSLVNILADSSGPGTVGLHG-DSQYFFLTSAFITLAIILLHTFWGVIFFDG 171

Query: 182 YAEGNTTDQYFVPVVHLVAGMVTLVN--FASGGCVVGIPLLYILASLILLHCGKMV--WR 237
             +   +   FV V HLV   +TL+N        V+   +L ++ +   +  G  V   +
Sbjct: 172 CEKRKYSHIAFVVVSHLVVSGLTLLNRPLYEASLVISYIILLLMGAWAFVVAGGSVRSIK 231

Query: 238 RLTAS 242
           +L   
Sbjct: 232 KLLTC 236

This family consists of several eukaryotic Aph-1 proteins.Gamma-secretase catalyzes the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signaling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity. Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
PF06105	238	Aph-1: Aph-1 protein; InterPro: IPR009294 This fam	100.0
KOG3972	252	consensus Predicted membrane protein [Function unk	100.0
PF10086	223	DUF2324: Putative membrane peptidase family (DUF23	98.15
PF13367	191	PrsW-protease: Protease prsW family	92.26
COG4377	258	Predicted membrane protein [Function unknown]	85.99

>PF06105 Aph-1: Aph-1 protein; InterPro: IPR009294 This family consists of several eukaryotic Aph-1 proteins

Probab=100.00  E-value=6.4e-85  Score=581.91  Aligned_cols=227  Identities=39%  Similarity=0.693  Sum_probs=220.9

Q ss_pred             cchhhHHHHHHHHhhHHHHhHHhhcCCchhHHHHHHHHHHHHHHHHHHHhHHhhcccCCCCCchhhHHHHHHHHHHHHHH
Q 026159            2 TVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGL   81 (242)
Q Consensus         2 t~~~~fGc~~iafGP~lalF~~tIa~~P~lIIili~gaFfWLvSLLlsS~iW~~~~pl~~~~~~~l~~~v~~sV~~QE~f   81 (242)
                      |+++++||+||||||++++|.+||||||+|||++++||||||+|+|+||++|++++|++|+    +++++++||++||.+
T Consensus         1 T~~~f~Gc~liafgP~lalf~~tIa~~p~liIi~i~~aFfWLvSLLlss~iW~i~~pl~~~----l~f~v~~sV~~QE~f   76 (238)
T PF06105_consen    1 TLAVFFGCALIAFGPALALFVFTIARDPQLIIILIAGAFFWLVSLLLSSLIWFIVVPLRDN----LAFGVLFSVLIQEAF   76 (238)
T ss_pred             ChHHHHHHHHHHHCHHHHhhheeeeCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc----hhHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999997    668999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCccccchhhHHHHHhccchhhHHHHHHHhhcccccccCcccccCCCCCchHHHHHH
Q 026159           82 RVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISA  161 (242)
Q Consensus        82 R~~~y~ll~kae~gL~~i~~~~~~~~~~~~~~~~la~v~GlGfG~ms~~f~~~n~Lads~GpGt~~~~~c~~~~~fl~SA  161 (242)
                      |++|||++||||||||+++||+++|    +|||++|||+|+|||+|||+|+++|+|+|++||||+|+|+||++|||++||
T Consensus        77 R~~~~~ll~kae~gL~~i~~~~~~~----~~~~~lA~v~GlGfGimsg~f~~~n~Lads~GPGt~g~~~c~~~~ffl~SA  152 (238)
T PF06105_consen   77 RYLYYKLLKKAEEGLQSIAEDGTSP----ISRHQLAYVSGLGFGIMSGVFSFVNILADSLGPGTVGIHGCPSMPFFLTSA  152 (238)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCC----CccceeeehhccchHHHHHHHHHHhhhhhccCCceeccCCCCCccchHHHH
Confidence            9999999999999999999987655    678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccCceeeEEehhhhHHHHHHHhhhc--cCCCCceehHHHHHHHHHHHHHHhhhhhe
Q 026159          162 IIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVN--FASGGCVVGIPLLYILASLILLHCGKMVW  236 (242)
Q Consensus       162 ~~tl~~~llH~fW~Vi~F~g~~~~~~~~~~~V~~~Hl~vs~lTllN--~~~~gc~~s~~~~~~~~~~~~~~~~~~~w  236 (242)
                      ++|+++++||+|||||+|||||||||+++++|+++|+++|++|++|  .++++|+.+.|+++++++++..+|++.+|
T Consensus       153 ~~tl~~~lLH~fW~VI~F~g~~~~~~~~i~~V~~~Hl~vs~lTllN~~~~~~~~v~~~~il~~~~~~a~~~~gg~~~  229 (238)
T PF06105_consen  153 FMTLAFILLHTFWMVIFFDGCEKKNWWLIAFVVISHLLVSCLTLLNSPLYSGGCVPSYPILVLTGAWAFFVAGGSVR  229 (238)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCceEEEehHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHhCccHH
Confidence            9999999999999999999999999999999999999999999999  67789999999999999999999999998

Gamma-secretase catalyses the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signalling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity [].; GO: 0016485 protein processing, 0043085 positive regulation of catalytic activity, 0016021 integral to membrane

>KOG3972 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=5.9e-78  Score=525.39  Aligned_cols=226  Identities=26%  Similarity=0.421  Sum_probs=215.6

Q ss_pred             CcchhhHHHHHHHHhhHHHHhHHhhcCCchhHHHHHHHHHHHHHHHHHHHhHHhhc-ccCCCCCchhhHHHHHHHHHHHH
Q 026159            1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAF-LPLKSTTWWPFALLIISSVGFQE   79 (242)
Q Consensus         1 Mt~~~~fGc~~iafGP~lalF~~tIa~~P~lIIili~gaFfWLvSLLlsS~iW~~~-~pl~~~~~~~l~~~v~~sV~~QE   79 (242)
                      ||.+++|||+++||||++|+|.+|||+||.|||++++||||||||||+||++|++. .|++|+    ++|++.+||++||
T Consensus         1 M~~~~ffgC~fiaFgPa~ALf~~tIA~dPvRIIiliagaFFWLvSLLisSl~W~~l~i~l~~~----lifg~~vsV~~qE   76 (252)
T KOG3972|consen    1 MGAAVFFGCTFIAFGPAFALFVFTIAHDPVRIIILIAGAFFWLVSLLISSLVWFGLSIVLPDD----LIFGATVSVIAQE   76 (252)
T ss_pred             CCcceeeeeEEeeeCcchhhheeeecCCCeeehhhHHHHHHHHHHHHHHHHHHHheEccchhh----hhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998 566664    7899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCccccchhhHHHHHhccchhhHHHHHHHhhcccccccCcccccCCCCCchHHHH
Q 026159           80 GLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLI  159 (242)
Q Consensus        80 ~fR~~~y~ll~kae~gL~~i~~~~~~~~~~~~~~~~la~v~GlGfG~ms~~f~~~n~Lads~GpGt~~~~~c~~~~~fl~  159 (242)
                      .||++|||++|||||||++++||+   |. +++||++|||+|+|||+|||+|+.+|.|+|+.||||+|+||++++ ||+.
T Consensus        77 ~fR~ayyklLkka~~GL~si~~d~---~~-~~s~h~lAyVsGLgfGIiSgvFs~vN~lad~sGPGtvGl~g~s~~-~fl~  151 (252)
T KOG3972|consen   77 LFRFAYYKLLKKAQEGLNSITEDG---RL-HNSRHMLAYVSGLGFGIISGVFSTVNALADFSGPGTVGLHGDSPY-FFLT  151 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccC---CC-chhHHHHHHHhccchhHHHHHHHHHHHHHhccCCCeeccCCCcch-hhHH
Confidence            999999999999999999999974   33 588999999999999999999999999999999999999999995 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccCceeeEEehhhhHHHHHHHhhhccCCCCceehHHHHHHHHHHHHHHhhhhhe
Q 026159          160 SAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGIPLLYILASLILLHCGKMVW  236 (242)
Q Consensus       160 SA~~tl~~~llH~fW~Vi~F~g~~~~~~~~~~~V~~~Hl~vs~lTllN~~~~gc~~s~~~~~~~~~~~~~~~~~~~w  236 (242)
                      ||++++.++|+|+||+|++||+|||+||+....|+.+|+++|.+|++|+++. +..+..++|++.+++.++|.++.-
T Consensus       152 sa~~al~iiLlHvfW~ivffdac~k~~~~~l~~vv~SHLlvs~lt~lns~~~-y~~~la~~flilvl~g~~af~~aG  227 (252)
T KOG3972|consen  152 SAFSALLIILLHVFWGIVFFDACEKIAYVPLGAVVVSHLLVSFLTFLNSRGF-YVLVLAVQFLILVLMGAWAFVIAG  227 (252)
T ss_pred             HHHHHHHHHHHHHHHHheeehhhhhhchhhhHHHHHHHHHHHHHHHhCccch-hHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999877 888888999999999999988753

>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.15  E-value=1.8e-05  Score=70.60  Aligned_cols=171  Identities=18%  Similarity=0.121  Sum_probs=115.7

Q ss_pred             hhHHHHhHHhhcCCchhHHHHHHHHHHHHHHHHHHHhHH--hhcccCCC------CCchhhHHHHHHHHHHHHHHHHHHH
Q 026159           15 GPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW--RAFLPLKS------TTWWPFALLIISSVGFQEGLRVLFW   86 (242)
Q Consensus        15 GP~lalF~~tIa~~P~lIIili~gaFfWLvSLLlsS~iW--~~~~pl~~------~~~~~l~~~v~~sV~~QE~fR~~~y   86 (242)
                      -|.. ++...=.|+.......+.|+..|.++..+.-...  ....+.++      +++.....+-+.+=.+||..||.-+
T Consensus         5 ~pi~-l~~~~rk~~~~~~~~f~~Ga~~F~v~~~vle~~l~~~~~~~~~~~~~~~~~~~l~~ly~~l~AGiFEE~gR~i~~   83 (223)
T PF10086_consen    5 LPIL-LFIYFRKRKKISWKPFILGALVFFVFAQVLELPLHQIVLSPNADGLIWTSNPILYALYGGLMAGIFEETGRYIGF   83 (223)
T ss_pred             HHHH-HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555 5566667888889999999999988777665433  22233322      2222234467788899999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCccccchhhHHHHHhccchhhHHHHHHH----hhccccc--ccCcccccC-----------
Q 026159           87 KVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFC----LSLLTPA--FGPATFYVD-----------  149 (242)
Q Consensus        87 ~ll~kae~gL~~i~~~~~~~~~~~~~~~~la~v~GlGfG~ms~~f~~----~n~Lads--~GpGt~~~~-----------  149 (242)
                      |.++|-++..+                 .-+..-|+|||.+=+++-.    +|.+.-+  .-.|+....           
T Consensus        84 k~l~kk~~~~~-----------------~~al~~GlGhGg~Eailvg~~~~l~~~v~~~~in~g~~~~~~~~~~~~~~~~  146 (223)
T PF10086_consen   84 KYLLKKRRDWS-----------------DDALAYGLGHGGIEAILVGGLSLLNNLVLAMMINSGSLDQLLEQPAELLEQI  146 (223)
T ss_pred             HHHHHcccchh-----------------hHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhhHHHHH
Confidence            99886431111                 1377899999988655443    3543222  222332110           


Q ss_pred             ----CCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccCceeeEEehhhhHHHHHHH
Q 026159          150 ----RCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMV  203 (242)
Q Consensus       150 ----~c~~~~~fl~SA~~tl~~~llH~fW~Vi~F~g~~~~~~~~~~~V~~~Hl~vs~l  203 (242)
                          .+.+-..++.+.+.-.+=+++|+..+++.+.|.++||++.....+..|.++=..
T Consensus       147 ~~~l~~~~~~~~~l~~~ERi~Al~~hi~lSvlV~~av~~~k~~~l~~AIllHaliD~~  204 (223)
T PF10086_consen  147 QSALASLPPWSFLLGGVERIFALLFHIGLSVLVWYAVRQRKKWYLVLAILLHALIDFP  204 (223)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence                022224788999999999999999999999999999888888888999887663

However, they are predicted to be integral membrane proteins (with several transmembrane segments).

>PF13367 PrsW-protease: Protease prsW family

Probab=92.26  E-value=6.2  Score=33.51  Aligned_cols=95  Identities=18%  Similarity=0.079  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccCCCccccchhhHHHHHhccchhhHHHHHHHhhcccccccCcc
Q 026159           67 FALLIISSVGFQEGLRVLFWKVYKR-LEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPAT  145 (242)
Q Consensus        67 l~~~v~~sV~~QE~fR~~~y~ll~k-ae~gL~~i~~~~~~~~~~~~~~~~la~v~GlGfG~ms~~f~~~n~Lads~GpGt  145 (242)
                      .....+.+=...|..++.-..++.. .++..++.           .|-...+.++|+||+.+=-+....|-..|..+.  
T Consensus        43 ~~~~~~~a~~~EE~~K~l~v~~~~~~~~~~~~~~-----------~d~~~~g~a~GlGFa~~En~~Y~~~~~~~~~~~--  109 (191)
T PF13367_consen   43 LWGAFLIAPLVEEFAKLLPVLLLLLLRRRRFDEP-----------MDGLVYGAAVGLGFAIMENILYILNAAEDNGGS--  109 (191)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhhHhhcCc-----------chhhhhhhHHHHHHHHHHHHHHHHHhhhcccch--
Confidence            4456778888999999887666652 33322111           244688999999999999999998866444332  


Q ss_pred             cccCCCCCchHHHHHHHHHHHH-HHHHHHHHHHhhccc
Q 026159          146 FYVDRCPQMPFFLISAIIALAF-VTIHTFSMVIAFNGY  182 (242)
Q Consensus       146 ~~~~~c~~~~~fl~SA~~tl~~-~llH~fW~Vi~F~g~  182 (242)
                            .+ .-+.+ ++.-... ...|..|+.++.-|.
T Consensus       110 ------~~-~~~~~-~~~R~~~~~~~H~~~t~i~g~~l  139 (191)
T PF13367_consen  110 ------VQ-GGLST-AILRGITSVPGHALFTAIFGYGL  139 (191)
T ss_pred             ------hh-hHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Confidence                  11 11111 2222222 579999999975444

>COG4377 Predicted membrane protein [Function unknown]

Probab=85.99  E-value=8.8  Score=34.93  Aligned_cols=123  Identities=17%  Similarity=0.206  Sum_probs=71.6

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccchhhHHHHHhccchhhHHHHHHHhhccccc
Q 026159           61 STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPA  140 (242)
Q Consensus        61 ~~~~~~l~~~v~~sV~~QE~fR~~~y~ll~kae~gL~~i~~~~~~~~~~~~~~~~la~v~GlGfG~ms~~f~~~n~Lads  140 (242)
                      ++|.+--+.|.+..=++.|.-|+.++|.+.| + -++                .--+.+-|+|||..-+.+-.+.-+.+-
T Consensus        74 ~hPl~y~IYG~lMAg~FEE~gR~l~~rfl~k-R-~~~----------------~Ad~lAyglGHgGlEail~g~~S~~~l  135 (258)
T COG4377          74 DHPLIYIIYGLLMAGFFEETGRLLFFRFLEK-R-SLE----------------KADALAYGLGHGGLEAILLGLTSLLNL  135 (258)
T ss_pred             hCCcHHHHHHHHHHHHHHHHhHHHHHHHHHh-C-ccc----------------chhHHHHhcccccHHHHHHHHHhHhhH
Confidence            3444445568899999999999999999875 1 111                122456789998876655433322111


Q ss_pred             ccCcccccCCCCCchHHHHHH------------------------HHHHHHHHHHHHHHHHhhcccccCceeeEEehhhh
Q 026159          141 FGPATFYVDRCPQMPFFLISA------------------------IIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVV  196 (242)
Q Consensus       141 ~GpGt~~~~~c~~~~~fl~SA------------------------~~tl~~~llH~fW~Vi~F~g~~~~~~~~~~~V~~~  196 (242)
                      .==+.--..|+||.  .+.|.                        +.-..=+..+..-++..+++.++||+.........
T Consensus       136 ~i~~~Avn~g~~~~--L~~sGaeal~~~~~~ll~~lS~W~~~g~~~ERI~A~~vQ~~Ltl~V~~AVrqrrpi~Ll~ai~L  213 (258)
T COG4377         136 YIVLSAVNTGNPQV--LMQSGAEALSENMLKLLQSLSVWQIYGLGFERILALGVQLLLTLWVYQAVRQRRPIYLLAAIGL  213 (258)
T ss_pred             HHhhhhhccCCHHH--HHHhhHHHhhHHHHHHHhCCcHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            11111112233332  12211                        11112233445556778999999999999888889


Q ss_pred             HHHHHHH
Q 026159          197 HLVAGMV  203 (242)
Q Consensus       197 Hl~vs~l  203 (242)
                      |-+.-.=
T Consensus       214 HAlfdlp  220 (258)
T COG4377         214 HALFDLP  220 (258)
T ss_pred             HHHhcCC
Confidence            9765443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00