Citrus Sinensis ID: 026165

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPGVCGLHFCMKWKLAWFNSSCLGIFRIEVS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEccccccEEEEEEEcccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccEEEEEcccccccccccEEEEEHHcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEHHHHHHHcccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccccccccccccccccEEEEEEccccccEEEEEEcccccHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHcccccEEEEEccccccccHHHHEEEEHHcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEEEEEccccccEEEEEEc
Coil and Loop (DISEMBL)
mkiegfepifgepkaewadsrsDSLGRFLfhvsapdsshlliqvTDFRSNTWEAKRSVLQLDdmrdeigiggsWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKskgmprisisltrlTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERneniqnqplyskrqklqkmnfsdktdisasilsngsqdspgvcglhfcMKWKLawfnssclgifrievs
Flexible Loop (DISEMBL)
mkiegfepifgepkaewADSRSDSLGRFLFHVsapdsshlliqVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAqkskgmprISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAekerneniqnqplyskrqKLQKMNFSDKTDISASILSNGSQDSPGVCGLHFCMKWKLAWFNSSCLGIFRIEVS
Low Complexity Region (SEG)
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLekeaaaekeRNENIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPGVCGLHFCMKWKLAWFNSSCLGIFRIEVS
Disordered region (IsUnstruct)
************************LGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCL****************************************************GVCGLHFCMKWKLAWFNSSCLGIFRI***
Disordered Region (DISOPRED)
****GFE*IFG**************GRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHS********KIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSM*****************************************************************VCGLHFCMKWKLAWFNSSCLGIFRIEV*
Disordered Region (DISEMBL)
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPGVCGLHFCMKWKLAWFNSSCLGIFRIEVS
Disordered Region (DISPRO)
*********FGEPKA******SDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSD*TDISASI******DSPGVCGLHFCMKWKLAWFNSSCLGIFRIEVS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPGVCGLHFCMKWKLAWFNSSCLGIFRIEVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
224083464	297	predicted protein [Populus trichocarpa]	0.933	0.760	0.557	2e-66
388519441	240	unknown [Lotus japonicus]	0.842	0.85	0.549	3e-58
357519993	243	hypothetical protein MTR_8g093850 [Medic	0.847	0.843	0.558	2e-57
449459256	240	PREDICTED: uncharacterized protein LOC10	0.834	0.841	0.553	2e-56
296082599	169	unnamed protein product [Vitis vinifera]	0.623	0.893	0.638	6e-49
255550518	162	conserved hypothetical protein [Ricinus	0.623	0.932	0.592	4e-44
27754430	236	unknown protein [Arabidopsis thaliana] g	0.809	0.830	0.481	4e-42
79547434	236	uncharacterized protein [Arabidopsis tha	0.809	0.830	0.481	4e-42
297797403	236	hypothetical protein ARALYDRAFT_496595 [	0.805	0.826	0.473	3e-41
8777314	245	unnamed protein product [Arabidopsis tha	0.628	0.620	0.578	4e-41

>gi|224083464|ref|XP_002307037.1| predicted protein [Populus trichocarpa] gi|222856486|gb|EEE94033.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 131/235 (55%), Positives = 170/235 (72%), Gaps = 9/235 (3%)

Query: 6   FEPIFGEPKAEWADSRSDSLG---RFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
           FEPIF EP+  WA + +   G   +FL H+ APD +HL IQVTD+ SNT+EA +SV+QLD
Sbjct: 7   FEPIFNEPRIGWAKNSNPGSGLMDQFLMHIFAPDDNHLKIQVTDYHSNTFEAVKSVMQLD 66

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD IGIGGSW+EF++Y+VAS K+EDVKL+LE  S++DG AYAK+VAQKSKGMP ISIS
Sbjct: 67  DMRDCIGIGGSWAEFVEYLVASFKAEDVKLVLEKLSDSDGVAYAKLVAQKSKGMPLISIS 126

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT+L  +AA +AMA +S  LF AF+  + L++QE+E  LQL K  +AEKER+ENIQ+Q  
Sbjct: 127 LTKLLDNAARDAMANMSFGLFKAFKRTKNLVLQEKEHSLQLTKVISAEKERSENIQSQ-- 184

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSPGVC----GLHFCMKWKLAWFNSSC 233
             KRQKL+KMN SD+ D+S    SNG+Q+SPG      G     K   + + + C
Sbjct: 185 LGKRQKLEKMNSSDRLDVSGPPASNGAQNSPGCVLSLGGFQIICKLSASIYITEC 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519441|gb|AFK47782.1| unknown [Lotus japonicus]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/213 (54%), Positives = 154/213 (72%), Gaps = 9/213 (4%)

Query: 1   MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQ 60
           M  E FEPIFGEPK EWA   S  L  FLFH +APDSSH+++ VTDF S+TWEA+ SV  
Sbjct: 1   MAFEDFEPIFGEPKVEWAAHSSCPLRPFLFHATAPDSSHIVVCVTDFHSDTWEARLSVSF 60

Query: 61  LDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRIS 120
           L+D+RD IGIGGSW+EF++Y V S+KSED+KL+LE +SN+DG ++AK+VAQKSKGMP I+
Sbjct: 61  LEDIRDIIGIGGSWAEFVEYFVTSLKSEDLKLVLEANSNSDGVSHAKLVAQKSKGMPLIT 120

Query: 121 ISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180
           I LT+L  SA  EAM+ LSL LF AF+++   +V+EQER + L    AAEK +NE +Q +
Sbjct: 121 IPLTKLLDSAVNEAMSNLSLNLFRAFKNITCSLVKEQERSVWLTNMIAAEKAKNETLQTE 180

Query: 181 PLYSKRQKLQKMNFSDKTDISASILSNGSQDSP 213
                 QK QK++ S+K  +S    +NG + SP
Sbjct: 181 -----YQKFQKISDSEKAGVS----TNGLKKSP 204

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519993|ref|XP_003630285.1| hypothetical protein MTR_8g093850 [Medicago truncatula] gi|355524307|gb|AET04761.1| hypothetical protein MTR_8g093850 [Medicago truncatula]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/213 (55%), Positives = 153/213 (71%), Gaps = 8/213 (3%)

Query: 1   MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQ 60
           M  + FEPIF EPK EW    S  L  FLFHV  P+SSHL+I VT+F S+TWEA  SV  
Sbjct: 1   MAFQDFEPIFAEPKLEWKPHCSHPLRPFLFHVHPPNSSHLVIHVTNFHSDTWEAHLSVSS 60

Query: 61  LDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRIS 120
           L+D+ D IGIGGSWSEF +Y V S+KSED+KL+LE +SN+DG + AK++AQKSKGMP I+
Sbjct: 61  LEDIMDIIGIGGSWSEFANYFVNSLKSEDLKLVLEPNSNSDGVSSAKLIAQKSKGMPLIT 120

Query: 121 ISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180
           I LT+L  S+A+EA++ LSL LF AFRS +  +V  QER +QL    A+EKERNE I   
Sbjct: 121 IPLTKLVDSSASEAVSNLSLSLFKAFRSTKCSLVDVQERSVQLTNMMASEKERNETI--- 177

Query: 181 PLYSKRQKLQKMNFSDKTDISASILSNGSQDSP 213
           PL  +RQK QK++ S+K  +S    +NG+Q+SP
Sbjct: 178 PL-DRRQKFQKISDSEKAGVS----NNGAQNSP 205

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459256|ref|XP_004147362.1| PREDICTED: uncharacterized protein LOC101217609 [Cucumis sativus] gi|449526088|ref|XP_004170046.1| PREDICTED: uncharacterized protein LOC101231777 [Cucumis sativus]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/204 (55%), Positives = 147/204 (72%), Gaps = 2/204 (0%)

Query: 1   MKIEGFEPIFGEP-KAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVL 59
           M+++ F PIFG+P + EW +  S SL +FLFHV +P+ SHL   VTDF SNTWE+ +S  
Sbjct: 1   MELQDFAPIFGKPTRVEWVNRGSLSLLQFLFHVYSPNPSHLRFLVTDFHSNTWESTKSAF 60

Query: 60  QLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRI 119
           QL+DMRD+IGIGG++SEF+DY+VAS+K  DV+L +EG S  DGAA  K++AQKSKGMP  
Sbjct: 61  QLEDMRDDIGIGGAFSEFVDYIVASMKFGDVRLCMEGQSGKDGAASVKLIAQKSKGMPVF 120

Query: 120 SISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQN 179
           SISLT+L  SAA EAMA +SL LF + +  +  +++EQE  LQL    + EKE+NENIQ 
Sbjct: 121 SISLTKLVDSAAAEAMATMSLGLFNSLKEKECSLMKEQEHSLQLTTMISTEKEKNENIQT 180

Query: 180 Q-PLYSKRQKLQKMNFSDKTDISA 202
           Q   Y K+QKLQ MN S+  D S 
Sbjct: 181 QLGQYRKKQKLQNMNASNSPDKSG 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082599|emb|CBI21604.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 99/155 (63%), Positives = 119/155 (76%), Gaps = 4/155 (2%)

Query: 1   MKIEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQ 60
           M  E FE IFGE K EWA+       RFLFH  A D S L I+VTDF S+TWEA RSV Q
Sbjct: 1   MGFEDFEAIFGEAKPEWANESR----RFLFHFDAIDPSRLRIRVTDFHSSTWEAVRSVEQ 56

Query: 61  LDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRIS 120
           L+DMRD +GIGGSWSEF+DYV+ASIKSEDVKL+LE ++ +DGAAYAK+VAQKSKGMP I 
Sbjct: 57  LEDMRDTVGIGGSWSEFVDYVIASIKSEDVKLVLEENAKSDGAAYAKLVAQKSKGMPLIC 116

Query: 121 ISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQ 155
            SL +L  SAA+EAM  LSLELF ++++MQ L ++
Sbjct: 117 FSLAKLENSAASEAMMNLSLELFKSYKNMQNLFIK 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550518|ref|XP_002516309.1| conserved hypothetical protein [Ricinus communis] gi|223544539|gb|EEF46056.1| conserved hypothetical protein [Ricinus communis]

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/157 (59%), Positives = 113/157 (71%), Gaps = 6/157 (3%)

Query: 1   MKIEGFEPIFGEPKAEWADSRSDSLG-----RFLFHVSAPDSSHLLIQVTDFRSNTWEAK 55
           M  E F+ I+GEPKAEW  + S  LG     RFL HV APD  HL    TDF SNT+ A 
Sbjct: 1   MAFEEFKAIYGEPKAEWV-TNSSVLGSVPLRRFLMHVFAPDYYHLKFLATDFHSNTFHAL 59

Query: 56  RSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKG 115
           +SV+QL+DMRD IGIGGSWS+F+DY++AS+KSEDVKL+LE  S++DG   AK+VAQK+KG
Sbjct: 60  KSVVQLEDMRDSIGIGGSWSDFVDYIIASVKSEDVKLVLEKRSDSDGPTCAKLVAQKAKG 119

Query: 116 MPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTL 152
           MP ISISLT+L  SAA  A+  LS  LF A +S Q L
Sbjct: 120 MPVISISLTKLEDSAANNALENLSFSLFKALKSAQNL 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27754430|gb|AAO22663.1| unknown protein [Arabidopsis thaliana] gi|50253576|gb|AAT71990.1| At1g12020 [Arabidopsis thaliana]

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/212 (48%), Positives = 134/212 (63%), Gaps = 16/212 (7%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ 
Sbjct: 64  DMRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT++  S+A+EAMA LSLELF AF+S Q L     +  +     A  EK++ +   NQ  
Sbjct: 124 LTKMVESSASEAMANLSLELFRAFKSKQHL-----QGEVSFSAAATDEKDKRDATYNQ-- 176

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSPG 214
                 L++  +S K D+ A   +N  QDSP 
Sbjct: 177 ------LER--YSRKLDVMAPS-TNNRQDSPA 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79547434|ref|NP_201206.3| uncharacterized protein [Arabidopsis thaliana] gi|332010446|gb|AED97829.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/212 (48%), Positives = 134/212 (63%), Gaps = 16/212 (7%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ 
Sbjct: 64  DMRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT++  S+A+EAMA LSLELF AF+S Q L     +  +     A  EK++ +   NQ  
Sbjct: 124 LTKMVESSASEAMANLSLELFRAFKSKQHL-----QGEVSFSAAATDEKDKRDATYNQ-- 176

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSPG 214
                 L++  +S K D+ A   +N  QDSP 
Sbjct: 177 ------LER--YSRKLDVMAPS-TNNRQDSPA 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797403|ref|XP_002866586.1| hypothetical protein ARALYDRAFT_496595 [Arabidopsis lyrata subsp. lyrata] gi|297312421|gb|EFH42845.1| hypothetical protein ARALYDRAFT_496595 [Arabidopsis lyrata subsp. lyrata]

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/211 (47%), Positives = 130/211 (61%), Gaps = 16/211 (7%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPEHSDPGSGLLRRCLFHVYASDSYNLTVHVTDFVSGVWATILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L  +S ++G   A++V+QK+KGMPR+ + 
Sbjct: 64  DMRDTVGIGGSWSEFLDYTVASMKSDNVKLLLGDNSVSNGVKTARLVSQKAKGMPRVIVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPL 182
           LT++  S+A+EAMA LSLELF AF+S Q L     +  +     A  EK++ +   N   
Sbjct: 124 LTKMVDSSASEAMANLSLELFRAFKSKQHL-----QGEVSSSAAATDEKDKRDATHN--- 175

Query: 183 YSKRQKLQKMNFSDKTDISASILSNGSQDSP 213
                  Q   +S K D+ A    N  QDSP
Sbjct: 176 -------QVERYSGKLDVMAPSTDN-RQDSP 198

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8777314|dbj|BAA96904.1| unnamed protein product [Arabidopsis thaliana]

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query: 3   IEGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLD 62
            E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLD
Sbjct: 4   FEKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLD 63

Query: 63  DMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISIS 122
           DMRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ 
Sbjct: 64  DMRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVP 123

Query: 123 LTRLTGSAATEAMAKLSLELFTAFRSMQTLIV 154
           LT++  S+A+EAMA LSLELF AF+S Q L V
Sbjct: 124 LTKMVESSASEAMANLSLELFRAFKSKQHLQV 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2160786	236	AT5G64010 "AT5G64010" [Arabido	0.801	0.822	0.471	2.9e-39

TAIR|locus:2160786 AT5G64010 "AT5G64010" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 99/210 (47%), Positives = 131/210 (62%)

Query:     4 EGFEPIFGEPKAEWADSRSDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEAKRSVLQLDD 63
             E FEPIFGE   E +D  S  L R LFHV A DS +L + VTDF S  W    SV QLDD
Sbjct:     5 EKFEPIFGEVVPERSDPGSGLLRRCLFHVYASDSYNLTVHVTDFISGVWTTILSVSQLDD 64

Query:    64 MRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISL 123
             MRD +GIGGSWSEF+DY VAS+KS++VKL+L   S ++G   A++V+QK+KGMPRI++ L
Sbjct:    65 MRDTVGIGGSWSEFVDYTVASLKSDNVKLLLGETSVSNGVKTARLVSQKAKGMPRINVPL 124

Query:   124 TRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLXXXXXXXXXRNENIQNQPLY 183
             T++  S+A+EAMA LSLELF AF+S Q L  Q +                +E  +    Y
Sbjct:   125 TKMVESSASEAMANLSLELFRAFKSKQHL--QGE--------VSFSAAATDEKDKRDATY 174

Query:   184 SKRQKLQKMNFSDKTDISASILSNGSQDSP 213
             ++ ++     +S K D+ A   +N  QDSP
Sbjct:   175 NQLER-----YSRKLDVMAPS-TNNRQDSP 198


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      242       233   0.00086  113 3  11 22  0.41    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  192 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.78u 0.13s 18.91t   Elapsed:  00:00:01
  Total cpu time:  18.78u 0.13s 18.91t   Elapsed:  00:00:01
  Start:  Fri May 10 00:28:24 2013   End:  Fri May 10 00:28:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090332 "stomatal closure" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
PF15384	197	DUF4610: Domain of unknown function (DUF4610)	97.01
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	94.5

>PF15384 DUF4610: Domain of unknown function (DUF4610)

Probab=97.01  E-value=0.0094  Score=53.16  Aligned_cols=111  Identities=17%  Similarity=0.272  Sum_probs=94.8

Q ss_pred             cceEEEEeCC-----CCCCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhcccccceEeecCCCCC
Q 026165           26 GRFLFHVSAP-----DSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNA  100 (242)
Q Consensus        26 ~PfLFh~~A~-----ds~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS~~VKL~L~~~s~s  100 (242)
                      -+|+++-+-.     +.+...|+|||--. -|.+.++-++|+.+|+-.|.- +..||..-+.+.+..+.|.|-|-.+   
T Consensus        13 ~ryvCyce~~~~~~~~~g~~~i~vTDg~d-vW~t~~t~dsL~~~k~~~~L~-~~Edy~~rfR~Ac~~~~vtvtlqed---   87 (197)
T PF15384_consen   13 PRYVCYCEGEGSGDGDAGVWNIYVTDGAD-VWSTCFTPDSLAALKARFGLS-SAEDYFSRFRAACEQQAVTVTLQED---   87 (197)
T ss_pred             CcEEEEEeCCCCCCCCCCeeEEEecccHH-hhhhccCHHHHHHHHhhcccc-hHHHHHHHHHHHhhcCeeEEEEecC---
Confidence            3588888877     78889999999874 499999999999999999984 6889999999999999999999863   


Q ss_pred             CCccceeeeeeecCCCceeEEeecccccchHHHHHHHhhHHHHHHHH
Q 026165          101 DGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFR  147 (242)
Q Consensus       101 ~Ga~~akLVAqKaKGmPrItI~L~kl~~saasD~manlSl~Lf~afr  147 (242)
                            +++-+-++|-.-+++.|.|+.+..+...+-.+-+.|.+...
T Consensus        88 ------~a~Ltls~g~s~L~~dL~k~p~~Ea~~~Lq~L~f~lAe~v~  128 (197)
T PF15384_consen   88 ------RASLTLSGGPSALTFDLSKVPAPEAAPRLQALTFRLAERVC  128 (197)
T ss_pred             ------eEEEEecCCCccceEEhhhCCCchhhHHHHHHHHHHHHHHH
Confidence                  44456689999999999999999998888877777765553

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=94.50  E-value=0.85  Score=43.30  Aligned_cols=138  Identities=14%  Similarity=0.202  Sum_probs=83.0

Q ss_pred             CccceEEEEeCCCC--CCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhcccc-----cceEeecC
Q 026165           24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSE-----DVKLILEG   96 (242)
Q Consensus        24 ~l~PfLFh~~A~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS~-----~VKL~L~~   96 (242)
                      +-..++.++.=...  +|+.|.+||-|+ +|.+..|-.++....++.  ++++.+|++-+.-.|-.+     .-.+.+-.
T Consensus        14 p~~~yfL~~~W~~~~~~~F~i~lTDG~s-aW~g~vs~~ei~~~A~~~--~~~~~eYv~~l~kaL~~~~~~~~~y~f~~~~   90 (342)
T PF06632_consen   14 PDSIYFLQVSWEKDLGSGFDITLTDGQS-AWSGTVSEEEIRQRAKDW--DMEVEEYVQELKKALTGQQQPSSEYSFDLTE   90 (342)
T ss_dssp             CSSEEEEEEEESSSGGGEEEEEEESSSS-EEEEEEEHHHHHHHHHHT--TS-HHHHHHHHHHHHTSSSSSSSEEEEEE--
T ss_pred             CCceEEEEEEeccCCCCceEEEEecCCC-ceeeecCHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCCcceEEEee
Confidence            33445666654432  589999999995 899999999999988875  688999999999999654     23444421


Q ss_pred             CCCCCCccceeeeeeecCCCceeEEee-----cccccchH-HHHHHHhhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 026165           97 HSNADGAAYAKIVAQKSKGMPRISISL-----TRLTGSAA-TEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAA  168 (242)
Q Consensus        97 ~s~s~Ga~~akLVAqKaKGmPrItI~L-----~kl~~saa-sD~manlSl~Lf~afrs~q~~~~~eqe~~s~L~~~L~  168 (242)
                        ...|.....+-=.|  -..-|+.-|     ..+..-+. -.-|-++++.....+...-.++.+|-++..+-.+.+.
T Consensus        91 --~~~~~~~l~~t~~K--~~~~it~rLGsv~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~  164 (342)
T PF06632_consen   91 --DRESNKSLSFTIEK--RLKDITFRLGSVKLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLL  164 (342)
T ss_dssp             -----ETTTTEEEEEE--EESSEEEEEEEEE-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --ccCCCceEEEEEEE--ecCCceEEEeeEECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              12233344443333  355666655     33333221 1124456677777776666666666665544333333

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 36/257 (14%), Positives = 83/257 (32%), Gaps = 60/257 (23%)

Query: 1   MKIEGFEPIFGEPKAE-------WA--DSRSDSLGRFLFHVSAPDSSHLLIQV-TDFRSN 50
           +  E  + I     A        W     + + + +F+  V   +   L+  + T+ R  
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 51  TWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVA 110
           +   +  + Q D + ++         F  Y V+ +  +    + +       A    ++ 
Sbjct: 106 SMMTRMYIEQRDRLYNDN------QVFAKYNVSRL--QPYLKLRQALLELRPAKN--VLI 155

Query: 111 QKSKGMPRISISLTRLTGSA----ATEAMAKLSLELFTAF----------RSMQTLIVQE 156
               G+           GS     A +      ++    F           S +T++   
Sbjct: 156 D---GVL----------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 157 QERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPGVC 216
           Q+   Q++    +  + + NI+   ++S + +L+++  S   +    +L N       V 
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLN-------VQ 254

Query: 217 GLHFCMKWKLAWFNSSC 233
                       FN SC
Sbjct: 255 N-----AKAWNAFNLSC 266

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
3mud_A	175	DNA repair protein XRCC4, tropomyosin alpha-1 CHA;	94.56
3w03_C	184	DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS	94.41
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	93.28
3q4f_C	186	DNA repair protein XRCC4; DSB repair, nuclear, rec	89.01

>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*

Probab=94.56  E-value=0.32  Score=41.55  Aligned_cols=122  Identities=17%  Similarity=0.283  Sum_probs=87.3

Q ss_pred             CCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhccc-----ccceEeecCCCCCCCccceeeeeee
Q 026165           38 SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKS-----EDVKLILEGHSNADGAAYAKIVAQK  112 (242)
Q Consensus        38 ~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS-----~~VKL~L~~~s~s~Ga~~akLVAqK  112 (242)
                      +.+.|..||-| ++|....|-+++..+-|++|-  --..|++-++-.|-+     ++-++.|.+.       .-.+-=.|
T Consensus        33 ~gf~i~ltDG~-saW~g~Vs~~~i~~eA~~~~m--e~e~Yv~el~kAl~~~~~~~~~~~f~~s~e-------~~~~syek  102 (175)
T 3mud_A           33 SGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSKE-------SCYFFFEK  102 (175)
T ss_dssp             GEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHTTCCCTTCCEEEEECTT-------TCEEEEEE
T ss_pred             cceEEEEeCCc-ceeeeeeCHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEecChh-------HHHHHHHH
Confidence            66899999999 579999999999999998876  467899999999933     4788888654       22232233


Q ss_pred             cCCCceeEEee-----cccccchHHHHHHHhhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 026165          113 SKGMPRISISL-----TRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ  180 (242)
Q Consensus       113 aKGmPrItI~L-----~kl~~saasD~manlSl~Lf~afrs~q~~~~~eqe~~s~L~~~L~sEKekne~iQ~q  180 (242)
                      .  +.-++..|     ..+...|  ++|-.|.-   -+.|    ...+=|..+.+|+..|..||+++..||..
T Consensus       103 ~--lk~vsfrLGs~~Lk~a~~pa--E~ireli~---~Aer----tV~kLqkeiD~LEDeL~~eKek~k~i~~e  164 (175)
T 3mud_A          103 N--LKDVSFRLGSFNLEKVENPA--EVIRELIC---YCLD----TTAKNEKSIDDLEEKVAHAKEENLNMHQM  164 (175)
T ss_dssp             E--CSSCEEEEEEEECEECSCHH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHhcccccccCCChH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  34455655     7777755  44443322   1222    23344688899999999999999988876

>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}

Probab=94.41  E-value=2.1  Score=36.59  Aligned_cols=131  Identities=16%  Similarity=0.225  Sum_probs=85.9

Q ss_pred             CCCccceEEEEeC-CC-CCCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhcccccc-----eEee
Q 026165           22 SDSLGRFLFHVSA-PD-SSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDV-----KLIL   94 (242)
Q Consensus        22 s~~l~PfLFh~~A-~d-s~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS~~V-----KL~L   94 (242)
                      |-+-.|.+..+.= +| .+...|.+||-+ ++|.+..|-+++..+-+++|-  .-++|++-|+.+|-+++-     ++-+
T Consensus        32 s~p~~~yflk~~W~~~l~sgF~L~LTDG~-sAW~G~vSe~~I~~~A~~~~m--~~e~Yv~eL~kAl~~~~~~~~~Y~f~~  108 (184)
T 3w03_C           32 SEPSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNF  108 (184)
T ss_dssp             TCTTSCEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEE
T ss_pred             CCCCceEEEEEEeccCCCCceEEEEECCC-ceeeEEcCHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCceEEEec
Confidence            4455666666654 33 367999999999 789999999999998888654  778999999999965443     5555


Q ss_pred             cCCCCCCCccceeeeeeec-CCCc--eeEEeecccccch-HHHHHHHhhHHHHHHHHHHhHHhHHHHHHHHH
Q 026165           95 EGHSNADGAAYAKIVAQKS-KGMP--RISISLTRLTGSA-ATEAMAKLSLELFTAFRSMQTLIVQEQERCLQ  162 (242)
Q Consensus        95 ~~~s~s~Ga~~akLVAqKa-KGmP--rItI~L~kl~~sa-asD~manlSl~Lf~afrs~q~~~~~eqe~~s~  162 (242)
                      .+       ...++.--|. +++-  .=+++|.++.+.+ +.--|-+++++-+..++..-.++.+|-+|..+
T Consensus       109 s~-------e~~~fs~eK~l~di~frLGSv~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~  173 (184)
T 3w03_C          109 SK-------ESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR  173 (184)
T ss_dssp             CT-------TTCEEEEEEEETTEEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc-------cceEEEeeeccCceEEEEeeeeeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43       2355544444 3322  1147788887755 23335666666666665555555555555443

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=93.28  E-value=1.8  Score=37.17  Aligned_cols=63  Identities=16%  Similarity=0.235  Sum_probs=49.9

Q ss_pred             CccceEEEEeCCCC--CCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhccccc
Q 026165           24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSED   89 (242)
Q Consensus        24 ~l~PfLFh~~A~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS~~   89 (242)
                      +-..++.|+...+.  .+++|++||-+ +.|.++.+-+++...-+.  -+++-.+|++-+...|..++
T Consensus        14 ~~~~~~l~~~w~~~~~~~f~l~~TdG~-~~w~g~v~~~~i~~rAk~--~~~~~eey~~~l~~aL~~~~   78 (213)
T 1ik9_A           14 PSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADD--MAMEKGKYVGELRKALLSGA   78 (213)
T ss_dssp             EEEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHH--TTCCHHHHHHHHHHHHCC--
T ss_pred             CCCeEEEEEEEcCCCCCceEEEEecCC-CceEEEecHHHHHHHHHh--cCCCHHHHHHHHHHHHhCCC
Confidence            33567788887653  78999999985 789999999999854444  47899999999999998883

>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}

Probab=89.01  E-value=7.2  Score=33.73  Aligned_cols=129  Identities=15%  Similarity=0.227  Sum_probs=90.6

Q ss_pred             CccceEEEEeCCCC--CCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhc-----ccccceEeecC
Q 026165           24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASI-----KSEDVKLILEG   96 (242)
Q Consensus        24 ~l~PfLFh~~A~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~asl-----sS~~VKL~L~~   96 (242)
                      +..+.+..+.--..  +.+.|..||-| ++|.+..|-+++..+-|++|-  --..|++-|+-+|     ..++-++.|.+
T Consensus        43 p~~~yfLqvsW~~~lgsGF~i~LTDGq-SaW~G~VS~~~Is~eAd~m~M--e~e~YV~eL~KALv~~~~~~~~y~F~~S~  119 (186)
T 3q4f_C           43 PSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSK  119 (186)
T ss_dssp             EEEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEECT
T ss_pred             CCccEEEEEEeccCCCcceEEEEeCCc-ceeeeEECHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEEecc
Confidence            34445555554443  67999999999 579999999999999999876  4678999999999     56688888875


Q ss_pred             CCCCCCccceeeeeeec-CCC--ceeEEeecccccchH-HHHHHHhhHHHHHHHHHHhHHhHHHHHHHHH
Q 026165           97 HSNADGAAYAKIVAQKS-KGM--PRISISLTRLTGSAA-TEAMAKLSLELFTAFRSMQTLIVQEQERCLQ  162 (242)
Q Consensus        97 ~s~s~Ga~~akLVAqKa-KGm--PrItI~L~kl~~saa-sD~manlSl~Lf~afrs~q~~~~~eqe~~s~  162 (242)
                      +       ...+.=.|. |++  .+=++.|.++..-+. ..-|-+.+|.=-..++..-+++.+|-||.++
T Consensus       120 e-------~~~Fs~eK~LkdvsF~LGSv~L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~  182 (186)
T 3q4f_C          120 E-------SCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR  182 (186)
T ss_dssp             T-------TCEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-------eeEEEEEEEecCcEEEEeeEEeeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3       444444443 443  334566777776443 3444556777777777777777777777654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00