Citrus Sinensis ID: 026168

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKTSL
ccccccccHHHHHHHHHHccccccccccccccccccEEEEEEcccHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccEEEEEEccccccccccccEEEEcccccccHHHHHHcccccccccccEEEEEcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccc
cccEccccHHHHHHHHHHccccccEEEEEcccccccEEEEEcccccHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHccccEEEEEEEEEccccccccEEEEEEccccccccEEEEEcccccccccccEEEEEEcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHccccccccccccccc
maltatatQSVRLDILKALRiphalvletsfdrpnlkyeVIGKSKEALKQIGQLIKDRFKdqcgiiyclsknecvevsnflnqkckiktvYYHAGLAARQRVVVQKKWHTGDVQIVCATIAfgmgidkpdvRFVIHNTLSKSIESYYQEsgragrdnlPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFgesfdrkackngsnpcdnclktsl
maltatatqsvrLDILKALRIPHAlvletsfdrpnlKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESgragrdnlPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGEsfdrkackngsnpcdnclktsl
MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKTSL
*********SVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAM*******QYCEQKAECRRQTLLEHFG***********************
MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV*******************QAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT**
********QSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKT**************KAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKTSL
*ALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCL****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKTSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query242 2.2.26 [Sep-21-2011]
Q9FT74606 ATP-dependent DNA helicas yes no 0.991 0.396 0.75 1e-105
P35187 1447 ATP-dependent helicase SG yes no 0.962 0.161 0.434 1e-55
Q8L840 1188 ATP-dependent DNA helicas no no 0.962 0.196 0.448 2e-55
Q9FT70 1150 ATP-dependent DNA helicas no no 0.962 0.202 0.436 2e-54
O18017 988 Bloom syndrome protein ho yes no 0.958 0.234 0.441 6e-54
Q09811 1328 ATP-dependent DNA helicas yes no 0.958 0.174 0.434 1e-52
Q9DEY9 1364 Bloom syndrome protein ho N/A no 0.979 0.173 0.462 1e-51
A8WK63 618 Putative ATP-dependent DN N/A no 0.946 0.370 0.430 3e-51
Q9VGI8 1487 Bloom syndrome protein ho yes no 0.971 0.158 0.446 4e-51
P54132 1417 Bloom syndrome protein OS yes no 0.975 0.166 0.461 7e-48
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana GN=RECQL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/240 (75%), Positives = 209/240 (87%)

Query: 1   MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
           MALTATAT+SV  D+LK+LRIP A VL+ SFDR NLKYEVI K+KE LKQ+ +L++DRFK
Sbjct: 367 MALTATATESVCQDVLKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFK 426

Query: 61  DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
           DQ GI+YCLSK+ECV+V+ FLN+KCK+KTVYYHAG+ A+QRV VQ+KW TG+V+IVCATI
Sbjct: 427 DQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATI 486

Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
           AFGMGIDK DVRFVIHNTLSK++ESYYQESGRAGRD L + CI LYQKKDFSRVVCMLRN
Sbjct: 487 AFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLRN 546

Query: 181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT 240
           GQG   + FK+AMAQAKKMQQYCE K ECRRQ LLE+FGESFDR  CK+  NPCDNC ++
Sbjct: 547 GQGRNMDRFKSAMAQAKKMQQYCELKTECRRQMLLEYFGESFDRMICKSSLNPCDNCERS 606
3'-5' DNA helicase that may play a role in the repair of DNA.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana GN=RECQL4A PE=2 SV=1 Back     alignment and function description
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana GN=RECQL4B PE=2 SV=1 Back     alignment and function description
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6 PE=2 SV=2 Back     alignment and function description
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1 Back     alignment and function description
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1 Back     alignment and function description
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae GN=CBG24191 PE=3 SV=1 Back     alignment and function description
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309 PE=1 SV=1 Back     alignment and function description
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
356533550 612 PREDICTED: LOW QUALITY PROTEIN: ATP-depe 1.0 0.395 0.851 1e-122
357441847 603 Bloom syndrome protein-like protein [Med 0.995 0.399 0.842 1e-120
224123710 588 predicted protein [Populus trichocarpa] 1.0 0.411 0.838 1e-119
118489987 617 unknown [Populus trichocarpa x Populus d 1.0 0.392 0.838 1e-119
296089753 591 unnamed protein product [Vitis vinifera] 0.991 0.406 0.833 1e-118
225450636 602 PREDICTED: ATP-dependent DNA helicase Q- 0.991 0.398 0.833 1e-117
449454038 601 PREDICTED: ATP-dependent DNA helicase Q- 0.995 0.400 0.821 1e-117
449517902 601 PREDICTED: ATP-dependent DNA helicase Q- 0.995 0.400 0.817 1e-116
255542856 586 DNA helicase hus2, putative [Ricinus com 0.855 0.353 0.864 1e-104
242071927 624 hypothetical protein SORBIDRAFT_05g02635 0.991 0.384 0.720 1e-104
>gi|356533550|ref|XP_003535326.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like 1-like [Glycine max] Back     alignment and taxonomy information
 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/242 (85%), Positives = 224/242 (92%)

Query: 1   MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
           MALTATAT +VR DILKALRIPHALVLE SFDRPNLKYEVI K+KE LKQ+GQL+ DRF+
Sbjct: 371 MALTATATHAVREDILKALRIPHALVLERSFDRPNLKYEVIAKTKEPLKQLGQLLIDRFR 430

Query: 61  DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
           +QCGI+YCLSK+ECVEVS FLN+KCKIKTVYYHAGLAARQRV VQKKW+ G+V IVCATI
Sbjct: 431 NQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWYDGEVHIVCATI 490

Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
           AFGMGIDKPDVRFVIHNT+SKSIESYYQESGRAGRDN PSVCI LYQKKDFSRVVCM+RN
Sbjct: 491 AFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNFPSVCIALYQKKDFSRVVCMIRN 550

Query: 181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT 240
           GQG+K E+FKTAMAQAKKMQ+YCE KAECRRQTLL+HFGESFDRK CK GS+PCDNCLK 
Sbjct: 551 GQGYKKESFKTAMAQAKKMQEYCEIKAECRRQTLLKHFGESFDRKDCKYGSSPCDNCLKN 610

Query: 241 SL 242
            L
Sbjct: 611 VL 612

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357441847|ref|XP_003591201.1| Bloom syndrome protein-like protein [Medicago truncatula] gi|355480249|gb|AES61452.1| Bloom syndrome protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224123710|ref|XP_002330189.1| predicted protein [Populus trichocarpa] gi|222871645|gb|EEF08776.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118489987|gb|ABK96790.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|296089753|emb|CBI39572.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225450636|ref|XP_002282715.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449454038|ref|XP_004144763.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517902|ref|XP_004165983.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255542856|ref|XP_002512491.1| DNA helicase hus2, putative [Ricinus communis] gi|223548452|gb|EEF49943.1| DNA helicase hus2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|242071927|ref|XP_002451240.1| hypothetical protein SORBIDRAFT_05g026350 [Sorghum bicolor] gi|241937083|gb|EES10228.1| hypothetical protein SORBIDRAFT_05g026350 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
TAIR|locus:2074429606 RECQI1 "RECQ helicase l1" [Ara 0.979 0.391 0.759 1.1e-96
ASPGD|ASPL0000045206 1534 musN [Emericella nidulans (tax 0.966 0.152 0.460 7.1e-52
SGD|S000004802 1447 SGS1 "Nucleolar DNA helicase o 0.958 0.160 0.441 7.4e-51
TAIR|locus:2197394 1188 RECQ4A [Arabidopsis thaliana ( 0.962 0.196 0.448 1.3e-50
CGD|CAL0004296 1189 SGS1 [Candida albicans (taxid: 0.962 0.195 0.438 1.2e-49
UNIPROTKB|Q5A5R4 1189 SGS1 "Putative uncharacterized 0.962 0.195 0.438 1.2e-49
WB|WBGene00001865 988 him-6 [Caenorhabditis elegans 0.958 0.234 0.441 1.4e-49
DICTYBASE|DDB_G0292130 1259 blm "Bloom syndrome protein" [ 0.971 0.186 0.430 3.6e-49
POMBASE|SPAC2G11.12 1328 rqh1 "RecQ type DNA helicase R 0.958 0.174 0.434 1.4e-48
UNIPROTKB|Q9DEY9 1364 blm "Bloom syndrome protein ho 0.979 0.173 0.462 5e-48
TAIR|locus:2074429 RECQI1 "RECQ helicase l1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 180/237 (75%), Positives = 207/237 (87%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             MALTATAT+SV  D+LK+LRIP A VL+ SFDR NLKYEVI K+KE LKQ+ +L++DRFK
Sbjct:   367 MALTATATESVCQDVLKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFK 426

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
             DQ GI+YCLSK+ECV+V+ FLN+KCK+KTVYYHAG+ A+QRV VQ+KW TG+V+IVCATI
Sbjct:   427 DQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATI 486

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMGIDK DVRFVIHNTLSK++ESYYQESGRAGRD L + CI LYQKKDFSRVVCMLRN
Sbjct:   487 AFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLRN 546

Query:   181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             GQG   + FK+AMAQAKKMQQYCE K ECRRQ LLE+FGESFDR  CK+  NPCDNC
Sbjct:   547 GQGRNMDRFKSAMAQAKKMQQYCELKTECRRQMLLEYFGESFDRMICKSSLNPCDNC 603
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006310 "DNA recombination" evidence=IEA
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0042631 "cellular response to water deprivation" evidence=IEP
GO:0070417 "cellular response to cold" evidence=IEP
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
ASPGD|ASPL0000045206 musN [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000004802 SGS1 "Nucleolar DNA helicase of the RecQ family" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TAIR|locus:2197394 RECQ4A [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0004296 SGS1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A5R4 SGS1 "Putative uncharacterized protein SGS1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
WB|WBGene00001865 him-6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292130 blm "Bloom syndrome protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC2G11.12 rqh1 "RecQ type DNA helicase Rqh1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q9DEY9 blm "Bloom syndrome protein homolog" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FT74RQL1_ARATH3, ., 6, ., 4, ., 1, 20.750.99170.3960yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
COG0514 590 COG0514, RecQ, Superfamily II DNA helicase [DNA re 2e-84
TIGR00614470 TIGR00614, recQ_fam, ATP-dependent DNA helicase, R 4e-78
PLN03137 1195 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4 1e-73
TIGR01389 591 TIGR01389, recQ, ATP-dependent DNA helicase RecQ 1e-66
PRK11057 607 PRK11057, PRK11057, ATP-dependent DNA helicase Rec 1e-57
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 9e-31
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 1e-20
smart0049082 smart00490, HELICc, helicase superfamily c-termina 2e-20
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 7e-13
COG1202 830 COG1202, COG1202, Superfamily II helicase, archaea 2e-10
COG4581 1041 COG4581, COG4581, Superfamily II RNA helicase [DNA 8e-06
COG1205 851 COG1205, COG1205, Distinct helicase family with a 1e-04
PRK00254 720 PRK00254, PRK00254, ski2-like helicase; Provisiona 2e-04
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 6e-04
PTZ00424401 PTZ00424, PTZ00424, helicase 45; Provisional 0.001
PLN00206518 PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel 0.001
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  262 bits (671), Expect = 2e-84
 Identities = 100/240 (41%), Positives = 143/240 (59%), Gaps = 8/240 (3%)

Query: 1   MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
           +ALTATAT  VR DI + L +  A +   SFDRPNL  +V+ K + + +           
Sbjct: 170 LALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQL 229

Query: 61  DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
            + GIIYCL++ +  E++ +L +   I    YHAGL+  +R  VQ+ +   +++++ AT 
Sbjct: 230 SKSGIIYCLTRKKVEELAEWLRK-NGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATN 288

Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
           AFGMGIDKPDVRFVIH  L  SIESYYQE+GRAGRD LP+  I+LY  +D      ++  
Sbjct: 289 AFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348

Query: 181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT 240
            +    E  +  +A+ ++M  YCE +  CRR  LL++FGE  + + C N    CDNCL T
Sbjct: 349 SKPD-EEQKQIELAKLRQMIAYCETQT-CRRLVLLKYFGED-EPEPCGN----CDNCLDT 401

Length = 590
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ Back     alignment and domain information
>gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional Back     alignment and domain information
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 242
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 100.0
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
KOG0352 641 consensus ATP-dependent DNA helicase [Replication, 100.0
KOG0353 695 consensus ATP-dependent DNA helicase [General func 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
PTZ00110545 helicase; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.98
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.98
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 99.98
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 99.98
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.97
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.97
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.97
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.97
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.97
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.97
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.97
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.97
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.97
PTZ00424401 helicase 45; Provisional 99.97
KOG0343 758 consensus RNA Helicase [RNA processing and modific 99.97
KOG0345 567 consensus ATP-dependent RNA helicase [RNA processi 99.96
KOG0346569 consensus RNA helicase [RNA processing and modific 99.96
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.96
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.96
KOG0327397 consensus Translation initiation factor 4F, helica 99.95
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.94
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.94
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.93
KOG4284 980 consensus DEAD box protein [Transcription] 99.93
KOG0334 997 consensus RNA helicase [RNA processing and modific 99.93
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.93
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.93
PRK10689 1147 transcription-repair coupling factor; Provisional 99.92
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.92
PRK13767 876 ATP-dependent helicase; Provisional 99.92
PHA02653675 RNA helicase NPH-II; Provisional 99.92
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.91
PRK09200 790 preprotein translocase subunit SecA; Reviewed 99.91
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.91
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.91
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.91
PRK02362 737 ski2-like helicase; Provisional 99.9
KOG0347731 consensus RNA helicase [RNA processing and modific 99.9
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.89
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.89
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 99.89
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.89
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 99.88
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.88
PRK04914 956 ATP-dependent helicase HepA; Validated 99.87
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.87
PRK00254 720 ski2-like helicase; Provisional 99.87
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 99.87
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.87
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 99.86
PRK01172 674 ski2-like helicase; Provisional 99.86
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.86
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.85
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.85
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.84
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.83
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.83
COG1202 830 Superfamily II helicase, archaea-specific [General 99.83
PRK14701 1638 reverse gyrase; Provisional 99.81
PRK05298652 excinuclease ABC subunit B; Provisional 99.81
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.8
PRK13766 773 Hef nuclease; Provisional 99.8
KOG0354 746 consensus DEAD-box like helicase [General function 99.8
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.79
PRK09401 1176 reverse gyrase; Reviewed 99.76
PHA02558501 uvsW UvsW helicase; Provisional 99.76
PRK09694 878 helicase Cas3; Provisional 99.75
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.75
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 99.75
PRK12904 830 preprotein translocase subunit SecA; Reviewed 99.74
smart0049082 HELICc helicase superfamily c-terminal domain. 99.74
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.72
COG1204 766 Superfamily II helicase [General function predicti 99.72
PRK13107 908 preprotein translocase subunit SecA; Reviewed 99.71
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.7
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.69
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.66
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.66
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.65
KOG0950 1008 consensus DNA polymerase theta/eta, DEAD-box super 99.65
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.64
PRK05580679 primosome assembly protein PriA; Validated 99.61
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.59
COG1205 851 Distinct helicase family with a unique C-terminal 99.58
COG1203 733 CRISPR-associated helicase Cas3 [Defense mechanism 99.58
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 99.58
KOG0922 674 consensus DEAH-box RNA helicase [RNA processing an 99.52
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.48
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 99.48
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.48
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 99.45
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 99.44
PRK12326 764 preprotein translocase subunit SecA; Reviewed 99.41
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 99.37
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.35
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 99.34
KOG0924 1042 consensus mRNA splicing factor ATP-dependent RNA h 99.33
KOG0923 902 consensus mRNA splicing factor ATP-dependent RNA h 99.31
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.31
KOG0953 700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.31
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.29
KOG0920 924 consensus ATP-dependent RNA helicase A [RNA proces 99.23
CHL00122 870 secA preprotein translocase subunit SecA; Validate 99.18
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.08
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 99.07
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 99.02
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.0
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 98.98
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 98.85
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 98.84
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.82
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.77
KOG0925 699 consensus mRNA splicing factor ATP-dependent RNA h 98.75
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.67
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 98.66
COG0653 822 SecA Preprotein translocase subunit SecA (ATPase, 98.63
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 98.62
KOG0387 923 consensus Transcription-coupled repair protein CSB 98.61
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 98.59
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 98.57
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.53
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 98.49
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 98.37
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 98.36
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 98.33
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 98.32
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.19
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 98.19
COG4096 875 HsdR Type I site-specific restriction-modification 98.16
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 98.13
KOG1123776 consensus RNA polymerase II transcription initiati 98.13
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 98.12
COG4889 1518 Predicted helicase [General function prediction on 97.84
KOG1015 1567 consensus Transcription regulator XNP/ATRX, DEAD-b 97.77
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 97.75
smart00492141 HELICc3 helicase superfamily c-terminal domain. 97.73
KOG4439901 consensus RNA polymerase II transcription terminat 97.7
smart00491142 HELICc2 helicase superfamily c-terminal domain. 97.66
TIGR02562 1110 cas3_yersinia CRISPR-associated helicase Cas3. The 97.52
KOG0386 1157 consensus Chromatin remodeling complex SWI/SNF, co 97.52
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 97.44
KOG1002791 consensus Nucleotide excision repair protein RAD16 97.43
PRK05580 679 primosome assembly protein PriA; Validated 97.2
TIGR00595 505 priA primosomal protein N'. All proteins in this f 97.19
PF13871278 Helicase_C_4: Helicase_C-like 97.1
PRK14873 665 primosome assembly protein PriA; Provisional 96.99
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 96.96
PRK10917 681 ATP-dependent DNA helicase RecG; Provisional 96.94
COG1198 730 PriA Primosomal protein N' (replication factor Y) 96.7
TIGR00643 630 recG ATP-dependent DNA helicase RecG. 96.59
KOG0701 1606 consensus dsRNA-specific nuclease Dicer and relate 96.56
PRK14873665 primosome assembly protein PriA; Provisional 96.33
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 96.22
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 96.19
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 95.99
KOG2340698 consensus Uncharacterized conserved protein [Funct 95.94
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 95.59
PRK10689 1147 transcription-repair coupling factor; Provisional 95.56
COG0513 513 SrmB Superfamily II DNA and RNA helicases [DNA rep 94.95
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 94.75
COG1200 677 RecG RecG-like helicase [DNA replication, recombin 94.59
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 94.05
PRK14701 1638 reverse gyrase; Provisional 93.82
KOG0331 519 consensus ATP-dependent RNA helicase [RNA processi 93.39
PF10593239 Z1: Z1 domain; InterPro: IPR018310 This entry repr 92.7
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 92.64
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 92.63
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 92.54
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 92.44
TIGR00614 470 recQ_fam ATP-dependent DNA helicase, RecQ family. 92.24
PRK11776 460 ATP-dependent RNA helicase DbpA; Provisional 91.67
PRK11192 434 ATP-dependent RNA helicase SrmB; Provisional 91.31
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 91.03
KOG0339 731 consensus ATP-dependent RNA helicase [RNA processi 90.51
KOG0338 691 consensus ATP-dependent RNA helicase [RNA processi 90.48
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 90.23
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 89.65
KOG0347 731 consensus RNA helicase [RNA processing and modific 89.49
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 89.2
KOG1001674 consensus Helicase-like transcription factor HLTF/ 88.66
PRK04837 423 ATP-dependent RNA helicase RhlB; Provisional 87.66
PRK10590 456 ATP-dependent RNA helicase RhlE; Provisional 87.46
PRK09401 1176 reverse gyrase; Reviewed 86.76
PRK13766 773 Hef nuclease; Provisional 86.74
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 86.33
cd0152490 RHOD_Pyr_redox Member of the Rhodanese Homology Do 85.38
PRK01297 475 ATP-dependent RNA helicase RhlB; Provisional 84.71
KOG0389 941 consensus SNF2 family DNA-dependent ATPase [Chroma 84.54
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 84.0
PTZ00110 545 helicase; Provisional 83.97
KOG02981394 consensus DEAD box-containing helicase-like transc 81.59
KOG0330 476 consensus ATP-dependent RNA helicase [RNA processi 81.3
cd01523100 RHOD_Lact_B Member of the Rhodanese Homology Domai 80.02
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.9e-46  Score=348.69  Aligned_cols=237  Identities=47%  Similarity=0.854  Sum_probs=206.3

Q ss_pred             CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHH
Q 026168            1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNF   80 (242)
Q Consensus         1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~   80 (242)
                      ++||||+++.+++++...|+...+.++..++.|+|+.|.+..........+..++.......++||||.+++.++.++..
T Consensus       620 lALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~  699 (1195)
T PLN03137        620 LALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAER  699 (1195)
T ss_pred             EEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHH
Confidence            58999999999999999999999999999999999999988755545667777776554567899999999999999999


Q ss_pred             HhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCc
Q 026168           81 LNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPS  160 (242)
Q Consensus        81 L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g  160 (242)
                      |... |+.+..|||+|++.+|..+++.|.+|+++|||||++++||||+|+|++||||++|.++++|+||+|||||+|.+|
T Consensus       700 L~~~-Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g  778 (1195)
T PLN03137        700 LQEF-GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS  778 (1195)
T ss_pred             HHHC-CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCc
Confidence            9874 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecCcHHHHHHHHHcCCCCCh-------------HHHHHHHHHHHHHHHHHhcchhchHHHHHhhhCCCCCcccc
Q 026168          161 VCIVLYQKKDFSRVVCMLRNGQGFKS-------------EAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKAC  227 (242)
Q Consensus       161 ~~i~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~~~~  227 (242)
                      .|++||+..+...+..++..+.....             ...+...+.+..|.+||++...|||++++.||||.++...|
T Consensus       779 ~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~~~~~C  858 (1195)
T PLN03137        779 SCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDSTNC  858 (1195)
T ss_pred             eEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccccCccCC
Confidence            99999999999999988875432110             01233456789999999986689999999999998654455


Q ss_pred             cCCCCCCCCCCCCC
Q 026168          228 KNGSNPCDNCLKTS  241 (242)
Q Consensus       228 ~~~~~~Cd~C~~~~  241 (242)
                      ..   .||||...+
T Consensus       859 ~~---~CDnC~~~~  869 (1195)
T PLN03137        859 KK---TCDNCSSSK  869 (1195)
T ss_pred             CC---CCCCCCCCC
Confidence            33   599998754

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
2v1x_A 591 Crystal Structure Of Human Recq-Like Dna Helicase L 4e-48
1oyy_A 523 Structure Of The Recq Catalytic Core Bound To Atp-G 3e-40
1oyw_A 523 Structure Of The Recq Catalytic Core Length = 523 2e-37
2p6r_A 702 Crystal Structure Of Superfamily 2 Helicase Hel308 3e-06
1hv8_A367 Crystal Structure Of A Dead Box Protein From The Hy 2e-05
2va8_A 715 Dna Repair Helicase Hel308 Length = 715 4e-05
2zj2_A 720 Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt 1e-04
2xb2_A411 Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar 1e-04
2hyi_C413 Structure Of The Human Exon Junction Complex With A 1e-04
2j0q_A410 The Crystal Structure Of The Exon Junction Complex 1e-04
2hxy_A391 Crystal Structure Of Human Apo-Eif4aiii Length = 39 2e-04
2yjt_D170 Crystal Structure Of E. Coli Dead-Box Protein Srmb 2e-04
2j0u_A374 The Crystal Structure Of Eif4aiii-Barentsz Complex 3e-04
2j0u_B374 The Crystal Structure Of Eif4aiii-Barentsz Complex 3e-04
2hjv_A163 Structure Of The Second Domain (Residues 207-368) O 4e-04
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/247 (42%), Positives = 145/247 (58%), Gaps = 21/247 (8%)
Query: 1   MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK---SKEALKQIGQLIKD 57
           + LTATAT  V  D  K L I        SF+RPNL YEV  K   +++ ++ I +LI  
Sbjct: 204 IGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLING 263
Query: 58  RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
           R+K Q GIIYC S+ +  +V+  L Q   I    YHA L    +  V +KW   ++Q+V 
Sbjct: 264 RYKGQSGIIYCFSQKDSEQVTVSL-QNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVV 322
Query: 118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRV--- 174
           AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD++ + CI+ Y   D  R+   
Sbjct: 323 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382
Query: 175 VCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPC 234
           V M   GQ            +  +M  YC+  ++CRR  + +HF E ++ +AC   +  C
Sbjct: 383 VVMENVGQ-----------QKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEAC---NKMC 428
Query: 235 DNCLKTS 241
           DNC K S
Sbjct: 429 DNCCKDS 435
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 Back     alignment and structure
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 Back     alignment and structure
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 Back     alignment and structure
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 Back     alignment and structure
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 Back     alignment and structure
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 Back     alignment and structure
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 Back     alignment and structure
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 Back     alignment and structure
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 Back     alignment and structure
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 Back     alignment and structure
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 Back     alignment and structure
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 1e-120
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 2e-96
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 4e-09
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 6e-09
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 1e-08
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 1e-08
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 2e-08
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 3e-08
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 4e-08
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 6e-07
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 1e-06
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 1e-06
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 2e-06
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 3e-06
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 7e-06
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 3e-05
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 6e-05
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 7e-05
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 9e-05
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 1e-04
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 2e-04
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 2e-04
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 4e-04
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 4e-04
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 5e-04
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Length = 591 Back     alignment and structure
 Score =  353 bits (908), Expect = e-120
 Identities = 101/244 (41%), Positives = 141/244 (57%), Gaps = 15/244 (6%)

Query: 1   MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK---SKEALKQIGQLIKD 57
           + LTATAT  V  D  K L I        SF+RPNL YEV  K   +++ ++ I +LI  
Sbjct: 204 IGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLING 263

Query: 58  RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
           R+K Q GIIYC S+ +  +V+  L     I    YHA L    +  V +KW   ++Q+V 
Sbjct: 264 RYKGQSGIIYCFSQKDSEQVTVSLQNL-GIHAGAYHANLEPEDKTTVHRKWSANEIQVVV 322

Query: 118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
           AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD++ + CI+ Y   D  R+  M
Sbjct: 323 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382

Query: 178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
           +                +  +M  YC+  ++CRR  + +HF E ++ +AC      CDNC
Sbjct: 383 VVMEN--------VGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACN---KMCDNC 431

Query: 238 LKTS 241
            K S
Sbjct: 432 CKDS 435
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Length = 523 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.98
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.97
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.97
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.97
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.97
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.97
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.97
3sqw_A 579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.97
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.97
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.97
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.97
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.97
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.97
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.97
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.97
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.97
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.96
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.96
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.92
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.95
4gl2_A699 Interferon-induced helicase C domain-containing P; 99.95
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.95
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.95
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.94
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 99.93
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.93
3jux_A 822 Protein translocase subunit SECA; protein transloc 99.93
2ykg_A 696 Probable ATP-dependent RNA helicase DDX58; hydrola 99.93
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.92
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.92
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.91
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.91
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.91
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 99.91
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.91
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.91
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 99.91
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 99.91
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.9
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.9
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 99.9
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.9
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 99.9
4a2w_A 936 RIG-I, retinoic acid inducible protein I; hydrolas 99.9
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 99.89
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.89
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.89
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.89
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.88
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.88
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.88
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.88
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 99.88
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.88
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.88
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.87
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.86
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.85
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.85
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.83
3rc3_A 677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.83
3h1t_A590 Type I site-specific restriction-modification syst 99.82
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 99.81
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.77
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.74
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.68
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.44
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.29
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 98.85
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 98.68
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 98.47
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 97.66
1gm5_A 780 RECG; helicase, replication restart; HET: DNA ADP; 96.58
3oiy_A 414 Reverse gyrase helicase domain; topoisomerase, DNA 95.62
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 95.36
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 95.14
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 94.14
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 92.63
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 92.31
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 91.98
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 91.78
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 91.63
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 91.43
1xti_A 391 Probable ATP-dependent RNA helicase P47; alpha-bet 91.3
3bor_A237 Human initiation factor 4A-II; translation initiat 90.19
1wp9_A 494 ATP-dependent RNA helicase, putative; ATPase, DNA 89.51
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 89.25
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 89.12
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 88.19
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 88.17
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 87.93
3gk5_A108 Uncharacterized rhodanese-related protein TVG08686 87.06
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 86.65
1fuu_A 394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 86.6
1s2m_A 400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 84.87
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 84.69
3g5j_A134 Putative ATP/GTP binding protein; N-terminal domai 84.0
2l82_A162 Designed protein OR32; structural genomics, northe 83.5
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 83.32
2i4i_A 417 ATP-dependent RNA helicase DDX3X; DEAD, structural 82.58
3eiq_A 414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 81.9
2j0s_A 410 ATP-dependent RNA helicase DDX48; mRNA processing, 81.18
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 80.97
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 80.88
2db3_A 434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 80.54
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-42  Score=312.21  Aligned_cols=230  Identities=40%  Similarity=0.695  Sum_probs=203.3

Q ss_pred             CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHH
Q 026168            1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNF   80 (242)
Q Consensus         1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~   80 (242)
                      ++||||+++.+...+.+.++...+.++..++.++++.+.+... ..+...+.+++... .+.++||||+|++.++.+++.
T Consensus       178 i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~  255 (523)
T 1oyw_A          178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEK-FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAAR  255 (523)
T ss_dssp             EEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEEC-SSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeC-CCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Confidence            5899999999999999999988888888899999999988763 45667788888754 677899999999999999999


Q ss_pred             HhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCc
Q 026168           81 LNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPS  160 (242)
Q Consensus        81 L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g  160 (242)
                      |... +..+..|||+|++++|..+++.|++|+.+|||||+++++|||+|++++||+++.|.++++|+||+||+||+|++|
T Consensus       256 L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~  334 (523)
T 1oyw_A          256 LQSK-GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA  334 (523)
T ss_dssp             HHHT-TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCE
T ss_pred             HHHC-CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCc
Confidence            9985 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecCcHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHhcchhchHHHHHhhhCCCCCcccccCCCCCCCCCCCC
Q 026168          161 VCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT  240 (242)
Q Consensus       161 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~~~~~~~~~~Cd~C~~~  240 (242)
                      .+++++++.+...++.++....  ..+........++.|..|+++ ..|||+.|++||||... .    +|+.||+|...
T Consensus       335 ~~~l~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~l~~m~~~~~~-~~crr~~l~~~f~e~~~-~----~c~~cd~c~~~  406 (523)
T 1oyw_A          335 EAMLFYDPADMAWLRRCLEEKP--QGQLQDIERHKLNAMGAFAEA-QTCRRLVLLNYFGEGRQ-E----PCGNCDICLDP  406 (523)
T ss_dssp             EEEEEECHHHHHHHHHHHHTSC--CSHHHHHHHHHHHHHHHHHTC-SSCHHHHHHHHTTCCCC-S----CCSCBHHHHSC
T ss_pred             eEEEEeCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHHHHhc-cccHhhhhHhhcCCCCC-C----CCCCCCCCCCC
Confidence            9999999999999988888722  223334455678999999997 88999999999999753 2    35679999875


Q ss_pred             C
Q 026168          241 S  241 (242)
Q Consensus       241 ~  241 (242)
                      +
T Consensus       407 ~  407 (523)
T 1oyw_A          407 P  407 (523)
T ss_dssp             C
T ss_pred             c
Confidence            4
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Back     alignment and structure
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 242
d1oywa3200 c.37.1.19 (A:207-406) RecQ helicase domain {Escher 6e-30
d1a1va2299 c.37.1.14 (A:326-624) HCV helicase domain {Human h 7e-25
d1jr6a_138 c.37.1.14 (A:) HCV helicase domain {Human hepatiti 1e-19
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 2e-14
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 2e-14
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 2e-13
d1c4oa2174 c.37.1.19 (A:410-583) Nucleotide excision repair e 2e-11
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 4e-11
d2j0sa2168 c.37.1.19 (A:244-411) Probable ATP-dependent RNA h 2e-10
d1fuka_162 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 3e-10
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 3e-10
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 2e-09
d1gm5a4206 c.37.1.19 (A:550-755) RecG helicase domain {Thermo 3e-08
d1t5la2181 c.37.1.19 (A:415-595) Nucleotide excision repair e 7e-08
d2rb4a1168 c.37.1.19 (A:307-474) ATP-dependent RNA helicase D 5e-07
d1tf5a4175 c.37.1.19 (A:396-570) Translocation ATPase SecA, n 1e-06
d2eyqa5211 c.37.1.19 (A:779-989) Transcription-repair couplin 2e-06
d1yksa2299 c.37.1.14 (A:325-623) YFV helicase domain {Yellow 5e-06
d1t5ia_168 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 9e-05
d1s2ma2171 c.37.1.19 (A:252-422) Putative ATP-dependent RNA h 4e-04
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (270), Expect = 6e-30
 Identities = 81/209 (38%), Positives = 121/209 (57%), Gaps = 11/209 (5%)

Query: 30  SFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKT 89
           SFDRPN++Y ++ K  + L Q+ + ++++ + + GIIYC S+ +  + +    Q   I  
Sbjct: 1   SFDRPNIRYMLMEK-FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAAR-LQSKGISA 57

Query: 90  VYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQE 149
             YHAGL    R  VQ+K+   D+QIV AT+AFGMGI+KP+VRFV+H  + ++IESYYQE
Sbjct: 58  AAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQE 117

Query: 150 SGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAEC 209
           +GRAGRD LP+  ++ Y   D + +   L      + +  +     A  M  + E +  C
Sbjct: 118 TGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNA--MGAFAEAQ-TC 174

Query: 210 RRQTLLEHFGESFDRKACKNGSNPCDNCL 238
           RR  LL +FGE    + C N    CD CL
Sbjct: 175 RRLVLLNYFGEGRQ-EPCGN----CDICL 198
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Length = 206 Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 211 Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 100.0
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 100.0
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 100.0
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 100.0
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 100.0
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 100.0
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 100.0
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.97
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.96
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.95
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.91
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.91
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.89
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.88
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.87
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.87
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.86
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.69
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.64
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.63
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.63
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 99.61
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 99.29
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 97.52
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 97.39
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 92.69
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 92.14
d2eyqa2117 Transcription-repair coupling factor, TRCF {Escher 86.96
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 86.66
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 82.79
d1gmxa_108 Sulfurtransferase GlpE {Escherichia coli [TaxId: 5 82.77
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 82.41
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 80.54
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 80.19
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.5e-47  Score=297.29  Aligned_cols=199  Identities=39%  Similarity=0.705  Sum_probs=176.8

Q ss_pred             CCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHh
Q 026168           30 SFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH  109 (242)
Q Consensus        30 ~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~  109 (242)
                      |++||||.|.+.. ..++++.|+.+++.. ...++||||+|++.++.++..|... ++.+..+||++++.+|.++++.|+
T Consensus         1 s~~RpNi~y~v~~-~~~k~~~L~~~l~~~-~~~~~IIF~~t~~~~~~l~~~l~~~-~~~~~~~h~~~~~~~r~~~~~~f~   77 (200)
T d1oywa3           1 SFDRPNIRYMLME-KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSK-GISAAAYHAGLENNVRADVQEKFQ   77 (200)
T ss_dssp             CCCCTTEEEEEEE-CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEc-CCcHHHHHHHHHHhc-CCCCEEEEEeeehhhHHhhhhhccC-CceeEEecCCCcHHHHHHHHHHHh
Confidence            5799999999876 345788899998764 6778999999999999999999985 999999999999999999999999


Q ss_pred             CCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHHHcCCCCChHHH
Q 026168          110 TGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAF  189 (242)
Q Consensus       110 ~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~~~~~~~~~~~~  189 (242)
                      +|+++|||||+++++|||+|+|++|||||+|.++++|+||+||+||+|++|.|++|+++.+...++++++.....  +..
T Consensus        78 ~g~~~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i~~~~~~--~~~  155 (200)
T d1oywa3          78 RDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG--QLQ  155 (200)
T ss_dssp             TTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSCCS--HHH
T ss_pred             cccceEEEecchhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhhhccccc--cch
Confidence            999999999999999999999999999999999999999999999999999999999999999999999876553  333


Q ss_pred             HHHHHHHHHHHHHHhcchhchHHHHHhhhCCCCCcccccCCCCCCCCCCC
Q 026168          190 KTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLK  239 (242)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~~~~~~~~~~Cd~C~~  239 (242)
                      ....+.+..|..|+++ ..|||..|++|||+.... +    |+.||+|..
T Consensus       156 ~~~~~~~~~m~~~~~~-~~Crr~~ll~~fge~~~~-~----C~~CD~C~~  199 (200)
T d1oywa3         156 DIERHKLNAMGAFAEA-QTCRRLVLLNYFGEGRQE-P----CGNCDICLD  199 (200)
T ss_dssp             HHHHHHHHHHHHHHTC-SSCHHHHHHHHTTCCCCS-C----CSCBHHHHS
T ss_pred             hhhHHHHHHHHHHHhc-hhhHHHHHHHHcCCCCCC-C----CCCCCCCCC
Confidence            3445557899999987 789999999999986542 3    567999954
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure