Citrus Sinensis ID: 026171

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MMTSNQLTAIARGEANTSFAFSTRNTVEAKWVRQIKMSSPNPNVKKANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQQKFEEFA
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccccccEEEEEEEEHHccccccccccccEEEEEEEEEEEEcccccccccccccccccHHHHHccccEEEEEEccccccccccccccEEEEEcccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEcccccccccccEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHccccccEccccccccEEEEEEEEEEEccccccccEEEEEEEcccEEEEEEccccccccccccccccHHHHHcccccEEEEccHHHHHHHccccccEEEEEEccEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHcEEEEEEEEEccccccccEEEEEEEEEEEEEccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MMTSNQLTAIARgeantsfafstrnTVEAKWVRQIkmsspnpnvkkanLSATKKerielpinydydgncgskakAYHIseflshpsgIQAMLNTSALQsfqfldtntyrcvlpkvqflnfeaapvmdlrvtptdkdctvqllsckfegsdivesQNDRFSAFMINHMtwntndsesFLEVEVKLKLCLEIytrpfsllpisaverpgnlMMQALVDRLVPLLLRQLLQDYDKWVQQKFEEFA
Flexible Loop (DISEMBL)
MMTSNQLtaiargeantsfafstrnTVEAKWVrqikmsspnpnvkkanlsatkkerieLPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQQKFEEFA
Low Complexity Region (SEG)
MMTSNQLTAIARGEANTSFAFSTRNTVEAKWVRQIKMSSPNPNVKKANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFlevevklklcleIYTRPFSLLPISAVERPGNLMMQAlvdrlvplllrqllqdYDKWVQQKFEEFA
Disordered region (IsUnstruct)
******************FAFSTRNTVEAKWVR***********************IELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCK***************AFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQQ******
Disordered Region (DISOPRED)
**************AN*S**F******************************************************YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKW**Q******
Disordered Region (DISEMBL)
MMTSNQLTAIARGEANTSFAFSTRNTVEAKWVRQIKMSSPNPNVKKANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQQKFEEFA
Disordered Region (DISPRO)
****NQLTAIARGEANTSFAFSTRNTVEAKWVRQIKMSSPNPNVKKANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQQKFE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMTSNQLTAIARGEANTSFAFSTRNTVEAKWVRQIKMSSPNPNVKKANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQQKFEEFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
356561899	244	PREDICTED: uncharacterized protein LOC10	0.805	0.799	0.676	4e-73
356541352	211	PREDICTED: uncharacterized protein LOC10	0.805	0.924	0.671	1e-72
356554381	211	PREDICTED: uncharacterized protein LOC10	0.805	0.924	0.669	1e-71
255558642	224	conserved hypothetical protein [Ricinus	0.871	0.941	0.614	5e-71
440583714	292	hypothetical protein [Lupinus angustifol	0.838	0.695	0.586	8e-71
449441974	241	PREDICTED: uncharacterized protein LOC10	0.938	0.941	0.573	3e-68
224082312	194	predicted protein [Populus trichocarpa]	0.760	0.948	0.695	8e-65
296081822	232	unnamed protein product [Vitis vinifera]	0.909	0.948	0.589	3e-62
294464841	311	unknown [Picea sitchensis]	0.776	0.604	0.577	2e-58
225429892	232	PREDICTED: uncharacterized protein LOC10	0.768	0.801	0.635	3e-58

>gi|356561899|ref|XP_003549214.1| PREDICTED: uncharacterized protein LOC100813897 [Glycine max]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 136/201 (67%), Positives = 164/201 (81%), Gaps = 6/201 (2%)

Query: 38  SSPNPNVKK-ANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSA 96
           +S N N KK ANL A KKERI LP    Y+ + G   K YHISEFLS PSGI A+LNT A
Sbjct: 42  TSLNSNAKKKANLFAEKKERIRLPT---YNDDLG--GKKYHISEFLSQPSGIAAVLNTKA 96

Query: 97  LQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQN 156
           LQSF+ LD NTYRC LPK+QFLNFEAAP++DLRVT TD+DC V++LSCKFEGS++V+ QN
Sbjct: 97  LQSFESLDANTYRCELPKLQFLNFEAAPLLDLRVTSTDEDCLVEMLSCKFEGSEVVKEQN 156

Query: 157 DRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVD 216
           D FSAFM N MTW    +ESFLEV+VKL L LEIYT+PF+++P SAVE PGN+MMQALVD
Sbjct: 157 DHFSAFMRNQMTWGGAGAESFLEVDVKLNLTLEIYTQPFTMMPTSAVEGPGNIMMQALVD 216

Query: 217 RLVPLLLRQLLQDYDKWVQQK 237
           +LVPLLL+Q+LQDYD+WV+++
Sbjct: 217 KLVPLLLQQMLQDYDEWVRKQ 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541352|ref|XP_003539141.1| PREDICTED: uncharacterized protein LOC100803285 [Glycine max]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/201 (67%), Positives = 163/201 (81%), Gaps = 6/201 (2%)

Query: 38  SSPNPNVKK-ANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSA 96
           +S N N KK ANL A KKERI LP    Y+ + G   K YHISEFLS PSGI A+LNT A
Sbjct: 9   TSLNSNAKKKANLFAEKKERIRLPT---YNDDLG--GKKYHISEFLSQPSGIAAVLNTKA 63

Query: 97  LQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQN 156
           LQSF+ LD NTYRC LPK+QFLNFEA P++DLRVT TD+DC V++LSCKFEGS++V+ QN
Sbjct: 64  LQSFESLDANTYRCELPKLQFLNFEAVPLLDLRVTSTDEDCLVEMLSCKFEGSEVVKEQN 123

Query: 157 DRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVD 216
           D FSAFM N MTW    +ESFLEV+VKL L LEIYT+PF+++P SAVE PGN+MMQALVD
Sbjct: 124 DHFSAFMRNQMTWGGAGAESFLEVDVKLNLTLEIYTQPFTMMPTSAVEGPGNIMMQALVD 183

Query: 217 RLVPLLLRQLLQDYDKWVQQK 237
           +LVPLLL+Q+LQDYD+WV+++
Sbjct: 184 KLVPLLLQQMLQDYDEWVRKQ 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554381|ref|XP_003545525.1| PREDICTED: uncharacterized protein LOC100793446 [Glycine max]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 136/203 (66%), Positives = 162/203 (79%), Gaps = 8/203 (3%)

Query: 37  MSSPNPN-VKKANLSATKKERIELPI-NYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNT 94
           ++S N N  KKANL A KKERI LP  N D  GN       YHISEFLS PSGI A+LNT
Sbjct: 8   LTSMNSNDKKKANLFAAKKERIILPTYNDDLGGN------KYHISEFLSQPSGIAAVLNT 61

Query: 95  SALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVES 154
            A QSFQ LD NTYRC LPK+QFLNFEAAP++DLRVT TD+DC V++LSCKFEGS++V+ 
Sbjct: 62  KAFQSFQSLDANTYRCELPKLQFLNFEAAPLLDLRVTSTDEDCLVEMLSCKFEGSEVVKE 121

Query: 155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQAL 214
           QN+ FSAFM NHMTW    +ESFLEV+V L L LEIYT+PF+++P SAVE PGN+MMQAL
Sbjct: 122 QNNHFSAFMRNHMTWGGAGAESFLEVDVNLNLTLEIYTQPFTMMPTSAVEGPGNIMMQAL 181

Query: 215 VDRLVPLLLRQLLQDYDKWVQQK 237
           VD+LVPLLL+Q LQDYD+WV+++
Sbjct: 182 VDKLVPLLLQQTLQDYDEWVRKQ 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558642|ref|XP_002520346.1| conserved hypothetical protein [Ricinus communis] gi|223540565|gb|EEF42132.1| conserved hypothetical protein [Ricinus communis]

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 137/223 (61%), Positives = 169/223 (75%), Gaps = 12/223 (5%)

Query: 17  TSFAF--STRNTVEAKWVRQIKMSSPNPNVKKANLSATKKERIELPINYDYDGNCGSKAK 74
           T F F  +TR  VE   +   K +    N KKANL A KKERI+LPI+ D          
Sbjct: 11  TKFPFLTTTRKRVETVMLCNCKANMLMLNSKKANLCAAKKERIQLPISDD---------- 60

Query: 75  AYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTD 134
            Y ISEFLSHP GIQAMLNT  L++F+ +D NTYRC LPKVQ LNFEAAPV+DLRVTPT+
Sbjct: 61  GYRISEFLSHPFGIQAMLNTKTLENFEPIDANTYRCFLPKVQLLNFEAAPVLDLRVTPTE 120

Query: 135 KDCTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRP 194
           +DCTV++LSCKF+GS+I+E QN+ FSAFM+N +TW+TN+S+ FLE ++KL + LEIYT P
Sbjct: 121 EDCTVEMLSCKFQGSEIMERQNEYFSAFMMNRLTWSTNESKPFLEADMKLNVTLEIYTAP 180

Query: 195 FSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQQK 237
           F+LLP SAVE PGNLMMQALVDRL+ LLL+QL+QDY +W  Q+
Sbjct: 181 FTLLPASAVEGPGNLMMQALVDRLIKLLLKQLMQDYYEWENQQ 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440583714|emb|CCH47217.1| hypothetical protein [Lupinus angustifolius]

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 143/244 (58%), Positives = 172/244 (70%), Gaps = 41/244 (16%)

Query: 32  VRQIKMSSPNPNVKKANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAM 91
           V+   ++S + N KKANL A KKER++LP    Y+ + G   K YHISEFLSH SGI A+
Sbjct: 51  VKVNAVTSSDLNSKKANLFAEKKERVKLPT---YNDDLG--GKKYHISEFLSHSSGIAAV 105

Query: 92  LNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDI 151
           LNT ALQSFQ LD NTY+C LPK+QFLNFEAAP MDLRVT TD+DC V++LSCKFEGS++
Sbjct: 106 LNTRALQSFQPLDDNTYKCALPKLQFLNFEAAPWMDLRVTSTDEDCLVEMLSCKFEGSEL 165

Query: 152 VESQNDRFSA-----------------------------------FMINHMTW-NTNDSE 175
           VE QN+ FSA                                   FM NHMTW   +D+E
Sbjct: 166 VEEQNNHFSALINQRMVISSDTCLFFLEQDQSLSHAYGENPHWETFMRNHMTWGGGDDAE 225

Query: 176 SFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQ 235
           SFLEV+VKL L LEIYTRPF++LPISAVERPGNLMMQALVD+LVP+LL+Q++QDYD+WVQ
Sbjct: 226 SFLEVDVKLNLTLEIYTRPFTMLPISAVERPGNLMMQALVDKLVPMLLQQMIQDYDEWVQ 285

Query: 236 QKFE 239
            + E
Sbjct: 286 NQLE 289

Source: Lupinus angustifolius

Species: Lupinus angustifolius

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441974|ref|XP_004138757.1| PREDICTED: uncharacterized protein LOC101204116 [Cucumis sativus] gi|449499567|ref|XP_004160852.1| PREDICTED: uncharacterized protein LOC101226750 [Cucumis sativus]

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 137/239 (57%), Positives = 174/239 (72%), Gaps = 12/239 (5%)

Query: 7   LTAIARGEANTSFAFSTRNTVEA-----KWVRQIKMSSPNPNVKKANLSATKKERIELPI 61
           LT    G+   SF   T +   +     +  +  K ++   N KKANLS  K+E+I LP 
Sbjct: 4   LTTKLLGQGTGSFPLLTAHKFSSPRKKFETTKLSKATNSETNTKKANLSVKKREKIRLP- 62

Query: 62  NYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFE 121
              Y G    + + YHI EFL+HPSGI+AMLN +AL+SFQ LD NTYRC LPK+Q LNFE
Sbjct: 63  --SYSG----QGRTYHIKEFLNHPSGIEAMLNKNALKSFQLLDANTYRCTLPKLQLLNFE 116

Query: 122 AAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEVE 181
           AAP +DLRV PTD+D TV++LSCKFEGS++VE QN+ FSA MINH+TW+T DS S+LEV+
Sbjct: 117 AAPTLDLRVIPTDEDFTVEMLSCKFEGSELVERQNEHFSALMINHLTWDTIDSNSYLEVD 176

Query: 182 VKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQQKFEE 240
           VKL L LEIYT PF+L+P +AVE PGNLM+QAL+D LVPLLLRQL+QDY+KW+ Q+ + 
Sbjct: 177 VKLNLSLEIYTLPFTLMPTAAVENPGNLMLQALLDNLVPLLLRQLMQDYEKWISQQLDH 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082312|ref|XP_002306644.1| predicted protein [Populus trichocarpa] gi|222856093|gb|EEE93640.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 135/194 (69%), Positives = 159/194 (81%), Gaps = 10/194 (5%)

Query: 43  NVKKANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQF 102
           N KKANL+A +KER+ LPI    DG        Y ISEFLSHP GIQA+LNT +LQSFQ 
Sbjct: 5   NSKKANLTAARKERMNLPIT---DG-------GYRISEFLSHPFGIQAILNTGSLQSFQS 54

Query: 103 LDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAF 162
           LD NTYRC+LPKV+ LNFEAAPV+DLRV+P+D+ CTV+++SCKF+GS++VE QNDRFSAF
Sbjct: 55  LDANTYRCILPKVELLNFEAAPVLDLRVSPSDEHCTVEMISCKFQGSELVERQNDRFSAF 114

Query: 163 MINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLL 222
           M+N MTWNTN SE FLEV+VKL L LEIYT+PF+LLP SAVE  GNL+MQAL+DRLVPLL
Sbjct: 115 MVNSMTWNTNISEPFLEVDVKLNLMLEIYTQPFTLLPTSAVESAGNLVMQALLDRLVPLL 174

Query: 223 LRQLLQDYDKWVQQ 236
           L QLL DY+KW  Q
Sbjct: 175 LEQLLLDYNKWTNQ 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081822|emb|CBI20827.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 170/229 (74%), Gaps = 9/229 (3%)

Query: 13  GEANTSFAFS--TRNTVEAKWVRQIKMSSPNPNVKKANLSATKKERIELPINYDYDGNCG 70
           G A  SFA    TR  ++   V +  +S  +   KKA L AT+KERI LP NYD     G
Sbjct: 8   GPAFLSFALPKLTRRRIQVIKVHKANLS--DSKQKKAYLFATRKERIGLP-NYD----VG 60

Query: 71  SKAKAYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRV 130
           S  K +HI EFLS PSG++A+LN  AL+SFQ L ++ YRC LP++Q LNFE  PV+DLRV
Sbjct: 61  SGGKTFHIREFLSDPSGVEAILNAKALKSFQSLGSDLYRCTLPRIQLLNFEVVPVVDLRV 120

Query: 131 TPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEI 190
           T T + CTV++LSC FEGS+I+E QN  FSA M N +TW+TN+SE FL+++V+L L LEI
Sbjct: 121 TSTSEVCTVEMLSCTFEGSEIMERQNKHFSASMRNQITWDTNNSEPFLDIDVELNLALEI 180

Query: 191 YTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQQKFE 239
           YT+PF+LLPISAVE PGNL+MQAL+DRLVPLLL+QL++DYD WVQQK E
Sbjct: 181 YTKPFTLLPISAVEGPGNLVMQALLDRLVPLLLQQLIRDYDNWVQQKCE 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294464841|gb|ADE77926.1| unknown [Picea sitchensis]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/194 (57%), Positives = 139/194 (71%), Gaps = 6/194 (3%)

Query: 42  PNVKKANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQ 101
           PN++KANL A + ERI LPI  D  G          IS+F SHPSG  +MLNTSALQ F+
Sbjct: 100 PNIRKANLFAKRSERISLPIYKDSVGT------PQPISKFFSHPSGKTSMLNTSALQDFE 153

Query: 102 FLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSA 161
            L  NTYRC L K++FLNFE  P++DLRV  T +DCTV++LSC+  GS  +ESQN+RFSA
Sbjct: 154 CLGPNTYRCTLLKIEFLNFEVTPILDLRVITTPEDCTVEMLSCRIGGSKTLESQNERFSA 213

Query: 162 FMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPL 221
              N++TWNT   E F+ V V+L + LE+YT PFSLLP S VERPGN++MQ L+DRLVP+
Sbjct: 214 KAKNYITWNTECEEQFVHVNVELNVTLEVYTLPFSLLPSSVVERPGNIIMQTLLDRLVPV 273

Query: 222 LLRQLLQDYDKWVQ 235
            L QLL+DY  WVQ
Sbjct: 274 FLEQLLEDYKNWVQ 287

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429892|ref|XP_002281057.1| PREDICTED: uncharacterized protein LOC100250928 [Vitis vinifera]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 152/195 (77%), Gaps = 9/195 (4%)

Query: 45  KKANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQFLD 104
           KKA L AT+KERI LP NYD     GS  K +HI EFLS PSG++A+LN  AL+SF    
Sbjct: 44  KKAYLFATRKERIGLP-NYD----VGSGGKTFHIREFLSDPSGVEAILNAKALKSFHI-- 96

Query: 105 TNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMI 164
              YRC LP++Q LNFE  PV+DLRVT T + CTV++LSC FEGS+I+E QN  FSA M 
Sbjct: 97  --PYRCTLPRIQLLNFEVVPVVDLRVTSTSEVCTVEMLSCTFEGSEIMERQNKHFSASMR 154

Query: 165 NHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLR 224
           N +TW+TN+SE FL+++V+L L LEIYT+PF+LLPISAVE PGNL+MQAL+DRLVPLLL+
Sbjct: 155 NQITWDTNNSEPFLDIDVELNLALEIYTKPFTLLPISAVEGPGNLVMQALLDRLVPLLLQ 214

Query: 225 QLLQDYDKWVQQKFE 239
           QL++DYD WVQQK E
Sbjct: 215 QLIRDYDNWVQQKCE 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:1005716370	274	AT4G31115 [Arabidopsis thalian	0.768	0.678	0.477	3.1e-44
TAIR|locus:2184377	255	AT5G04440 "AT5G04440" [Arabido	0.533	0.505	0.305	2.6e-15

TAIR|locus:1005716370 AT4G31115 [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 94/197 (47%), Positives = 129/197 (65%)

Query:    43 NVKKANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQF 102
             ++KKAN+SA++K+RI+L IN       G K   +  SEFL HPSG++A++N  ALQS+  
Sbjct:    78 SLKKANISASRKQRIKLEIN-------GEKELTF--SEFLKHPSGMEAVINAKALQSYHL 128

Query:   103 LDTN--TYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFS 160
             +D +  TYRC LPKVQ ++FE  PV+ LRVTPT +DCTV+LLSCK EGS+++E+Q++RFS
Sbjct:   129 VDDSDDTYRCTLPKVQLMSFEVYPVLVLRVTPTQEDCTVELLSCKLEGSELLENQSERFS 188

Query:   161 AFMINHMTWNTNDSESFXXXXXXXXXXXXIYTRPFSLLPISAVERPGNLMMQAXXXXXXX 220
             A M N MTWN    E F            I TRPF++LP+SAVE PGNL+MQ        
Sbjct:   189 AIMTNCMTWNMEHPEPFLEVDVRLNVTLEISTRPFTMLPVSAVEAPGNLVMQTLVDTLVP 248

Query:   221 XXXXXXXXXYDKWVQQK 237
                      YD+W++++
Sbjct:   249 LLLQQLLKDYDEWIKKQ 265

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2184377 AT5G04440 "AT5G04440" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 41/134 (30%), Positives = 71/134 (52%)

Query:    80 EFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTV 139
             E++S P+   ++L+   ++    +D NT+RC +   +F NFE  PV+ +RV      C +
Sbjct:    88 EYMSLPASQYSVLDAERIER---VDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCI 144

Query:   140 QLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFXXXXXXXXXXXXIYTRPFS--L 197
             +LLSCK EGS +V +QND+F A M+N ++ ++    S                 PF+  +
Sbjct:   145 KLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGSSEQQITSDAVIEVNIEIPFAFRV 204

Query:   198 LPISAVERPGNLMM 211
              P+ A+E  G  ++
Sbjct:   205 FPVGAIEATGTQVL 218


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.129   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      242       214   0.00085  112 3  11 22  0.36    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  182 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.12u 0.14s 17.26t   Elapsed:  00:00:01
  Total cpu time:  17.12u 0.14s 17.26t   Elapsed:  00:00:01
  Start:  Tue May 21 02:41:06 2013   End:  Tue May 21 02:41:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
pfam09366	170	pfam09366, DUF1997, Protein of unknown function (D	1e-39

>gnl|CDD|117908 pfam09366, DUF1997, Protein of unknown function (DUF1997)

 Score =  134 bits (340), Expect = 1e-39
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 78  ISEFLSHPSG-IQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKD 136
           ++E+L  P     A+L+   ++  + L    YR  +    F  FE  PV+ LRV P D  
Sbjct: 18  LAEYLRQPQRVFSALLD--PMKVER-LGDGRYRLTVRPFGFFGFEVEPVVVLRVEPEDDG 74

Query: 137 CTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFS 196
            T++LL C+ EG  +V   ND F   +   +  +   +E+ LE +  L + + +   P  
Sbjct: 75  LTIELLDCELEGLPLV---NDDFDLDLRASLYPDREATETGLEGDADLSVTVSL-PPPLR 130

Query: 197 LLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQ 235
           LLP   +E  G  ++Q ++ ++   L RQLL+D+  W+ 
Sbjct: 131 LLPEPVLESTGESLLQGILRQIKRRLTRQLLEDFHAWIA 169

This family of proteins are functionally uncharacterized. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
PF09366	158	DUF1997: Protein of unknown function (DUF1997); In	100.0
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	97.86
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	97.26
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	96.46
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	94.51

>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised

Probab=100.00  E-value=7.4e-46  Score=310.59  Aligned_cols=156  Identities=35%  Similarity=0.611  Sum_probs=151.6

Q ss_pred             cchHHHhcCCCce-EEecCCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCccccc
Q 026171           76 YHISEFLSHPSGI-QAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVES  154 (242)
Q Consensus        76 ~~l~eYL~~p~r~-~alldp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~  154 (242)
                      ++|++||++|+|| ++|+|++   ++|+||||+|||+|+|++||+|+|+|+|+|+|++++++|.+++.+|+|+|++.+++
T Consensus         2 ~~l~~YL~~~~r~~~~~~d~~---~ie~l~~~~yr~~~~~~~~~~~~v~P~v~l~v~~~~~~~~i~~~~~~l~G~~~~~~   78 (158)
T PF09366_consen    2 APLAEYLSDPQRWFSALFDPM---RIEPLGDNTYRLKMRPFQFFGFEVEPVVDLRVWPQDDGLTIRSLDCELRGSPLVEQ   78 (158)
T ss_pred             CchHHHHhCchhHHHHhcCHH---HcEEcCCCeEEEEEcCccEEEEEEEEEEEEEEEEcCCCeEEEEEEEEEeCCCcccc
Confidence            6899999999999 9999997   99999999999999999999999999999999999999999999999999998877


Q ss_pred             cccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026171          155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWV  234 (242)
Q Consensus       155 ~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~~qL~~DY~~W~  234 (242)
                       |.+|+++++|.|+|.+.++.+.++|+++|+|++++ |++|+++|++++|+|||+||++|+++|++||+++|++||++|+
T Consensus        79 -~~~f~l~~~~~l~~~~~~~~t~l~~~~~l~V~v~~-P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~~~l~~Dy~~w~  156 (158)
T PF09366_consen   79 -NDGFSLDLQASLYPEEPPGRTRLEGDADLSVSVEL-PPPFRLLPESLLESTGNAVLQQILRQIKPRFLQQLQADYHRWA  156 (158)
T ss_pred             -CCcEEEEEEEEEEEecCCCceEEEEEEEEEEEEEc-ChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             99999999999999998899999999999999999 9999999999999999999999999999999999999999998


Q ss_pred             Hh
Q 026171          235 QQ  236 (242)
Q Consensus       235 ~~  236 (242)
                      ++
T Consensus       157 ~~  158 (158)
T PF09366_consen  157 RE  158 (158)
T ss_pred             hC
Confidence            74

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=97.86  E-value=0.00022  Score=58.12  Aligned_cols=128  Identities=16%  Similarity=0.208  Sum_probs=75.4

Q ss_pred             cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEec-CceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCccccc
Q 026171           76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLP-KVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVES  154 (242)
Q Consensus        76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~-~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~  154 (242)
                      ..+-++|.||+.+.+|++-=  ..+|.+| +.|+.++. +++++..++  ...+++...++...+.   .++.|.+.   
T Consensus        10 ~~vw~~l~D~~~l~~ciPG~--~~~e~~~-~~~~~~~~v~vG~i~~~~--~g~~~~~~~~~~~~~~---~~~~g~g~---   78 (140)
T PF06240_consen   10 EKVWAFLSDPENLARCIPGV--ESIEKVG-DEYKGKVKVKVGPIKGTF--DGEVRITEIDPPESYT---LEFEGRGR---   78 (140)
T ss_dssp             HHHHHHHT-HHHHHHHSTTE--EEEEEEC-TEEEEEEEEESCCCEEEE--EEEEEEEEEETTTEEE---EEEEEEEC---
T ss_pred             HHHHHHhcCHHHHHhhCCCc--EEeeecC-cEEEEEEEEEeccEEEEE--EEEEEEEEcCCCcceE---eeeeccCC---
Confidence            67899999999998888764  5899999 99998887 666666666  4444443322332222   34445442   


Q ss_pred             cccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHH
Q 026171          155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPL  221 (242)
Q Consensus       155 ~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~r  221 (242)
                       ...++++..-.+.....++ +.+.++++++    + ..++..+..++++.+.+.+++++...+...
T Consensus        79 -~~~~~~~~~~~~~~~~~~~-T~v~~~~~~~----~-~G~la~~g~~~i~~~~~~l~~~f~~~l~~~  138 (140)
T PF06240_consen   79 -GGGSSASANITLSLEDDGG-TRVTWSADVE----V-GGPLASLGQRLIESVARRLIEQFFENLERK  138 (140)
T ss_dssp             -TCCEEEEEEEEEEECCCTC-EEEEEEEEEE----E-ECHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccceEEEEEEEEEcCCCCC-cEEEEEEEEE----E-ccCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence             1233333333344333333 6777776554    5 455665666666666666666666655544

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=97.26  E-value=0.013  Score=47.37  Aligned_cols=133  Identities=14%  Similarity=0.112  Sum_probs=76.3

Q ss_pred             ccchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEEcC-CCCeEEEEeeEEeCCcccc
Q 026171           75 AYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTD-KDCTVQLLSCKFEGSDIVE  153 (242)
Q Consensus        75 ~~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~~~-~~~~v~l~sc~l~G~~~v~  153 (242)
                      +..+=++|.||+++-+|.+.-  ..++.+++++|+.++ ++++.++...=...+++...+ .+..+.+.   ..|.+.- 
T Consensus        11 pe~vw~~l~D~~~~~~~~pg~--~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~-   83 (146)
T cd07823          11 PDRVWALLLDIERVAPCLPGA--SLTEVEGDDEYKGTV-KVKLGPISASFKGTARLLEDDEAARRAVLE---ATGKDAR-   83 (146)
T ss_pred             HHHHHHHhcCHHHHHhcCCCc--eeccccCCCeEEEEE-EEEEccEEEEEEEEEEEEeccCCCcEEEEE---EEEecCC-
Confidence            478999999999997787643  378888999998776 445544443333444554433 33344332   2232100 


Q ss_pred             ccccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHH
Q 026171          154 SQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLL  222 (242)
Q Consensus       154 ~~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl  222 (242)
                      .. ......+.-.|.+  .++.+.+.++++++++.-+     ..+...++++..+.++++.++.++.++
T Consensus        84 ~~-g~~~~~~~~~l~~--~~~gT~v~~~~~~~~~g~l-----~~l~~~~v~~~~~~~~~~~~~~l~~~~  144 (146)
T cd07823          84 GQ-GTAEATVTLRLSP--AGGGTRVTVDTDLALTGKL-----AQFGRGGIGDVAGRLLAQFAANLEARL  144 (146)
T ss_pred             Cc-ceEEEEEEEEEEe--cCCcEEEEEEEEEEEeeEh-----HHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence            00 0112222222443  3456777777766554444     445567777777777777777777664

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=96.46  E-value=0.15  Score=39.83  Aligned_cols=129  Identities=10%  Similarity=0.145  Sum_probs=70.8

Q ss_pred             cchHHHhcCCCceEEec-CCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCccccc
Q 026171           76 YHISEFLSHPSGIQAML-NTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVES  154 (242)
Q Consensus        76 ~~l~eYL~~p~r~~all-dp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~  154 (242)
                      ..+-++|.|++.+..++ ..+   .++.++++.|.+.+. .++..+...=....++...+.+..+.+..   .|.+.   
T Consensus        14 e~v~~~l~D~~~~~~w~p~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---   83 (144)
T cd05018          14 EEVWAALNDPEVLARCIPGCE---SLEKIGPNEYEATVK-LKVGPVKGTFKGKVELSDLDPPESYTITG---EGKGG---   83 (144)
T ss_pred             HHHHHHhcCHHHHHhhccchh---hccccCCCeEEEEEE-EEEccEEEEEEEEEEEEecCCCcEEEEEE---EEcCC---
Confidence            67899999999995555 444   788888888877653 22221111111233443323333333331   22110   


Q ss_pred             cccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHH
Q 026171          155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLL  222 (242)
Q Consensus       155 ~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl  222 (242)
                        ..+ ..+.+..+....++++.++..    +.+++ +.++..+|..++......++++.++.|+.++
T Consensus        84 --~~~-~~~~~~~~l~~~~~gT~v~~~----~~~~~-~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~  143 (144)
T cd05018          84 --AGF-VKGTARVTLEPDGGGTRLTYT----ADAQV-GGKLAQLGSRLIDGAARKLINQFFENLASKI  143 (144)
T ss_pred             --Cce-EEEEEEEEEEecCCcEEEEEE----EEEEE-ccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence              011 122322333223334444444    44445 5677788888888888888888888887764

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=94.51  E-value=0.88  Score=38.36  Aligned_cols=126  Identities=11%  Similarity=0.123  Sum_probs=70.2

Q ss_pred             cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEE-cCCCCeEEEEeeEEeCCccccc
Q 026171           76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTP-TDKDCTVQLLSCKFEGSDIVES  154 (242)
Q Consensus        76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~-~~~~~~v~l~sc~l~G~~~v~~  154 (242)
                      ..+-++|.+|+...+|++-=  +.+|..|| +|.+++. +++=-+.-+=-.-++... .+....     ..+.|.+--..
T Consensus        14 e~Vw~~L~dpe~~a~ciPG~--qs~e~~g~-e~~~~v~-l~ig~l~~~~~g~~~~~~v~~~~~~-----~~i~g~G~~~~   84 (146)
T COG3427          14 EAVWEFLNDPEQVAACIPGV--QSVETNGD-EYTAKVK-LKIGPLKGTFSGRVRFVNVDEPPRS-----ITINGSGGGAA   84 (146)
T ss_pred             HHHHHHhcCHHHHHhhcCCc--ceeeecCC-eEEEEEE-EeecceeEEEEEEEEEccccCCCcE-----EEEEeeccccc
Confidence            56889999999998888874  68998888 8887764 222222222222222222 223333     33444430000


Q ss_pred             cccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 026171          155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLL  227 (242)
Q Consensus       155 ~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~~qL~  227 (242)
                      =..++.+    ...-...+.++.+.|.++.++..             ++...|..+|+.+++.+..+|-+.|.
T Consensus        85 g~~~~~~----~v~l~~~g~gt~v~w~~~~~~gg-------------~laqlGsr~i~~~~~kli~~~~~~l~  140 (146)
T COG3427          85 GFADGTV----DVQLEPSGEGTRVNWFADANVGG-------------KLAQLGSRLIDSVARKLINRFFDCLS  140 (146)
T ss_pred             ceeeeee----EEEEEEcCCCcEEEEEEEccccH-------------HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            0112222    23333334458898888776653             44466777777777766666655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 41/266 (15%), Positives = 79/266 (29%), Gaps = 71/266 (26%)

Query: 16  NTSFAFSTRNTVEAKWVRQIKMS----SPNPNVK--------KANL--SATKKERIELP- 60
           N +  F+  N    +   +++ +     P  NV         K  +        +++   
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 61  ------INYDYDGNCGSKAK--------AYHI----SEFLSHPSGIQAMLNTSALQSFQF 102
                 +N     NC S            Y I    +    H S I+  +++   +  + 
Sbjct: 181 DFKIFWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 103 LDTNTY-RC--VLPKVQFLNFEAAPVMDLR----VTPTDKDCTVQLLSCKFEGSDIVESQ 155
           L +  Y  C  VL  VQ  N +A    +L     +T   K  T           D +   
Sbjct: 238 LKSKPYENCLLVLLNVQ--NAKAWNAFNLSCKILLTTRFKQVT-----------DFL--S 282

Query: 156 NDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALV 215
               +   ++H +      E    +   L   L+        LP   +    N    +++
Sbjct: 283 AATTTHISLDHHSMTLTPDEV-KSL---LLKYLDC---RPQDLPREVLT--TNPRRLSII 333

Query: 216 DRLVPLLLRQLLQDYDKWVQQKFEEF 241
                  +R  L  +D W     ++ 
Sbjct: 334 ----AESIRDGLATWDNWKHVNCDKL 355

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	95.79
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	93.1
2pcs_A	162	Conserved protein; structural genomics, unknown fu	92.25
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	81.28

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=95.79  E-value=0.15  Score=40.77  Aligned_cols=134  Identities=14%  Similarity=0.186  Sum_probs=73.4

Q ss_pred             cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCcccccc
Q 026171           76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQ  155 (242)
Q Consensus        76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~~  155 (242)
                      ..+=+++.|.++|-++.+.=  +-.+..+++.|+..+..+++-+..+.=....++...+++..|.++..  .|       
T Consensus        20 e~v~~lv~Dve~w~~~yp~~--~p~~~~~~~~~~~~~a~l~vg~~~~~~~~~s~~~~~~~~~~I~~~~~--~g-------   88 (161)
T 3p9v_A           20 DEVFDLLADVPKSASHFPKV--DKLVDLGNNAYRWEMEKVGVDKHAIQSVYACTYHADKEAGKITWSPI--KG-------   88 (161)
T ss_dssp             HHHHHHHTCHHHHHTTSTTE--EEEEEEETTEEEEEECCBSSGGGCBCCEEEEEEEEETTTTEEEEEEC--TT-------
T ss_pred             HHHHHHHhChhhhHhhCCCe--EEEEEcCCCceEEEEEEEeeeeEEEEEEEEEEEEEcCCCCEEEEEEe--cC-------
Confidence            66889999999975555432  34467788877776644443322222222334444343445554322  12       


Q ss_pred             ccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026171          156 NDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDY  230 (242)
Q Consensus       156 n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~~qL~~DY  230 (242)
                        .|...+.|.-+....++++   ..+++.+.+++ +.|+.    ++++.+...+++.+.++|...|...+.+=|
T Consensus        89 --~~~~~l~g~w~f~p~~~g~---t~V~~~~~~e~-~~pl~----~ll~~~~~~~~~~~~~~~v~af~~ra~~~~  153 (161)
T 3p9v_A           89 --EGNGVVSGSWTLSAKGDNA---TAVKFQTSAEL-TVPLP----SLLKLAISPVIKHEFNSLVDTYMANLKKAF  153 (161)
T ss_dssp             --STTEEEEEEEEEEESSSSC---EEEEEEEEEEE-EECSC----GGGHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             --ccceeEEEEEEEEECCCCe---EEEEEEEEEEE-cCcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3333456655554433332   23334444444 22222    556777888888888888888877765433

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=93.10  E-value=2.2  Score=32.47  Aligned_cols=128  Identities=10%  Similarity=0.063  Sum_probs=62.1

Q ss_pred             cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEec-CceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCccccc
Q 026171           76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLP-KVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVES  154 (242)
Q Consensus        76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~-~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~  154 (242)
                      ..+=+++.||+.+..+++.-  ..++ ++++.|+..+. +++.+.....-  .+++...+.+..+.+. ....|..    
T Consensus        26 e~Vw~~l~D~~~~~~w~p~~--~~~~-~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~i~~~-~~~~~~~----   95 (157)
T 2ns9_A           26 EEVFEFLTDPKRFSRAFPGF--KSVE-VEDGSFTIELRLSLGPLRGDARV--RASFEDLEKPSKATVK-GSGRGAG----   95 (157)
T ss_dssp             HHHHHHHTCHHHHGGGSTTE--EEEE-EETTEEEEEEEEESSSSEEEEEE--EEEEEEEETTTEEEEE-EEEECSS----
T ss_pred             HHHHHHHcCHHHHHhhCCCc--eEEE-ECCCEEEEEEEEEEcceeEEEEE--EEEEEecCCCcEEEEE-EEecCCC----
Confidence            67889999998885555432  3667 78888887753 12222233332  2333211122344332 1222311    


Q ss_pred             cccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHH
Q 026171          155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLL  222 (242)
Q Consensus       155 ~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl  222 (242)
                        ..|....+-.+.+  .++++.+....    .+++ +.++..+...++..+.+.++++.+++++.++
T Consensus        96 --~~~~~~~~~~l~~--~~~gT~v~~~~----~~~~-~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~  154 (157)
T 2ns9_A           96 --STLDFTLRFAVEP--SGGGSRVSWVF----EGNV-GGLAASMGGRVLDSLARRMINDVISGVKREL  154 (157)
T ss_dssp             --EEEEEEEEEEEEE--ETTEEEEEEEE----EEEE-EEGGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --ccEEEEEEEEEEe--CCCcEEEEEEE----EEEE-CcCHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1233333323433  22444444433    3444 4445444555666666666666665555443

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=92.25  E-value=3.2  Score=32.10  Aligned_cols=129  Identities=12%  Similarity=0.202  Sum_probs=66.3

Q ss_pred             cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEec-CceeEeEEEEEEEEE-EEEEcCCCCeEEEEeeEEeCCcccc
Q 026171           76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLP-KVQFLNFEAAPVMDL-RVTPTDKDCTVQLLSCKFEGSDIVE  153 (242)
Q Consensus        76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~-~~~ff~~eVePvv~l-rV~~~~~~~~v~l~sc~l~G~~~v~  153 (242)
                      ..+=+++.||+.+..+++.-  ..++.++++.|+..+. +++.+..++...+.+ ++.+   ...+.+...- .|.+   
T Consensus        16 e~Vw~~l~D~e~~~~w~p~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~---   86 (162)
T 2pcs_A           16 EEVWSKLMDPSILSKCIMGC--KSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIKP---PYHYKLLVNG-EGGP---   86 (162)
T ss_dssp             HHHHHHHTCHHHHHHHSTTE--EEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEET---TTEEEEEEEE-EETT---
T ss_pred             HHHHHHhcCHHHHHhhCCCc--eEeEEeCCCeEEEEEEEEeeeEEEEEEEEEEEEecCC---CcEEEEEEEe-cCCC---
Confidence            67899999999885555432  3677778888877652 122233333333222 2233   2244332111 1111   


Q ss_pred             ccccceeeeEEEEEEEee-cCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHH
Q 026171          154 SQNDRFSAFMINHMTWNT-NDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLL  223 (242)
Q Consensus       154 ~~n~~F~l~m~~~L~~~~-~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~  223 (242)
                         ..+.  +.+.++... .++.+.+..    .+.+++ ..++..++..++..+.+.++++.+++++.++.
T Consensus        87 ---~~~~--~~~~~~l~~~~~~gT~v~~----~~~~~~-~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e  147 (162)
T 2pcs_A           87 ---GFVN--AEGVIDLTPINDECTQLTY----TYSAEV-GGKVAAIGQRMLGGVAKLLISDFFKKIQKEIA  147 (162)
T ss_dssp             ---EEEE--EEEEEEEEESSSSEEEEEE----EEEEEE-ESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccEE--EEEEEEEEecCCCcEEEEE----EEEEEE-CCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               0111  233333333 223344443    334455 45666666677777777777777776666554

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=81.28  E-value=17  Score=28.16  Aligned_cols=37  Identities=14%  Similarity=0.240  Sum_probs=27.9

Q ss_pred             cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEecC
Q 026171           76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPK  114 (242)
Q Consensus        76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~~  114 (242)
                      ..+=+|+.||+.+-..++.-  ..++.++++.++..+..
T Consensus        17 e~V~~~~~D~e~~p~w~p~~--~~v~~~~~~~~~~~~~~   53 (155)
T 3ggn_A           17 EQLYAVWRDLPGLPLLMTHL--RSVEVLDDKRSRWTVEA   53 (155)
T ss_dssp             HHHHHHHHCGGGHHHHSTTC--CEEEECSSSEEEEEEEC
T ss_pred             HHHHHHHhCHHHhHHHhhhc--eEEEEecCCeeEEEEEe
Confidence            67889999999984444443  48888988888877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	96.68
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	95.08
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	83.47

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=96.68  E-value=0.027  Score=41.23  Aligned_cols=131  Identities=11%  Similarity=0.144  Sum_probs=74.3

Q ss_pred             cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEec-CceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCccccc
Q 026171           76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLP-KVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVES  154 (242)
Q Consensus        76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~-~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~  154 (242)
                      ..+=+.|.||++.-.|++.=  ..++.+++++|..++. +++.+..+..=.+.+.-.. . ...+........+.+    
T Consensus        14 e~v~~~l~D~~~~~~~~Pg~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~----   85 (147)
T d2pcsa1          14 EEVWSKLMDPSILSKCIMGC--KSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIK-P-PYHYKLLVNGEGGPG----   85 (147)
T ss_dssp             HHHHHHHTCHHHHHHHSTTE--EEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEE-T-TTEEEEEEEEEETTE----
T ss_pred             HHHHHHHcCHHHHHhhCcch--hhceecCCCEEEEEEEEeecceeeeeEEEEEEeccC-c-ccceeEeeccccccc----
Confidence            67899999999998888754  4799999999998877 4666555554333333333 1 212222211111111    


Q ss_pred             cccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHH
Q 026171          155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLL  223 (242)
Q Consensus       155 ~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~  223 (242)
                         ...+...-.+.. ..++.+    .+++++.+++ ..++..+...+++++.+.++++.+.++..++.
T Consensus        86 ---~~~~~~~~~~~~-~~~~~T----~v~~~~~~~~-~g~l~~l~~~li~~~~~~~~~~f~~~~~~~l~  145 (147)
T d2pcsa1          86 ---FVNAEGVIDLTP-INDECT----QLTYTYSAEV-GGKVAAIGQRMLGGVAKLLISDFFKKIQKEIA  145 (147)
T ss_dssp             ---EEEEEEEEEEEE-SSSSEE----EEEEEEEEEE-ESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hhcceeEEeeec-ccCCcE----EEEEEEEEEE-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               111111111111 122333    3444445566 56677777777777777777777777776654

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.08  E-value=0.34  Score=34.20  Aligned_cols=130  Identities=8%  Similarity=-0.018  Sum_probs=71.1

Q ss_pred             cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCcccccc
Q 026171           76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQ  155 (242)
Q Consensus        76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~~  155 (242)
                      ..+=+||.|+.++-.+++.-  ..++-.+++...-...+...++..............+.  ..........|..     
T Consensus        16 e~Vw~~l~D~~~~~~w~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----   86 (147)
T d2ns9a1          16 EEVFEFLTDPKRFSRAFPGF--KSVEVEDGSFTIELRLSLGPLRGDARVRASFEDLEKPS--KATVKGSGRGAGS-----   86 (147)
T ss_dssp             HHHHHHHTCHHHHGGGSTTE--EEEEEETTEEEEEEEEESSSSEEEEEEEEEEEEEETTT--EEEEEEEEECSSE-----
T ss_pred             HHHHHHHhCHhhhhhcccch--hheeecccccceeEEEEEEEEeeEeeeeeeeeeecCCc--ceeEEEeeecccc-----
Confidence            78999999999996665432  25554343322222233344444444444444444222  2222222222222     


Q ss_pred             ccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHH
Q 026171          156 NDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLL  223 (242)
Q Consensus       156 n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~  223 (242)
                          .....+.......++++.+...    ..+++ +.++..++..++++.-..+++..+..++.++.
T Consensus        87 ----~~~~~~~~~l~~~~~gt~v~~~----~~~~~-~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~  145 (147)
T d2ns9a1          87 ----TLDFTLRFAVEPSGGGSRVSWV----FEGNV-GGLAASMGGRVLDSLARRMINDVISGVKRELG  145 (147)
T ss_dssp             ----EEEEEEEEEEEEETTEEEEEEE----EEEEE-EEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----ceeeEEEEEEEecCCCcEEEEE----EEEEe-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                1122323333334444544444    34555 56778888888888888888888888888763

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=83.47  E-value=5.6  Score=27.93  Aligned_cols=126  Identities=13%  Similarity=0.123  Sum_probs=58.2

Q ss_pred             cchHHHhcCCCceEEecCCCcCcceEEcc--CCeEEEEecCceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCcccc
Q 026171           76 YHISEFLSHPSGIQAMLNTSALQSFQFLD--TNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVE  153 (242)
Q Consensus        76 ~~l~eYL~~p~r~~alldp~~~~rie~Lg--d~~fRl~l~~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~  153 (242)
                      ..+=+|+.|..++-..++.=  ..++-++  ++..+... ...+.+.....++.+...  +.+..+.+..-  .| +   
T Consensus        14 ~~V~~~l~D~~~~~~w~p~~--~~~~il~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~--~g-~---   82 (146)
T d2d4ra1          14 ERVYRLAKDLEGLKPYLKEV--ESLEVVAREGARTRSRW-VAVAMGKKVRWLEEEEWD--DENLRNRFFSP--EG-D---   82 (146)
T ss_dssp             HHHHHHHHCHHHHGGGCTTE--EEEEEEEEETTEEEEEE-EEEETTEEEEEEEEEEEE--TTTTEEEEEEE--EE-S---
T ss_pred             HHHHHHHHChhhHHhhcccc--EEEEEEEecCCcceEEE-EEEeeeeeEEEEEEEEEc--CCCCEEEEEEc--cC-C---
Confidence            67888999988884444331  2444443  34444432 234445555544444333  33445544321  12 1   


Q ss_pred             ccccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHH
Q 026171          154 SQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLL  222 (242)
Q Consensus       154 ~~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl  222 (242)
                           |. .+.+..+....++++.+...+    .+++..+++..++.+++++.-+.-+++.++.++.|+
T Consensus        83 -----~~-~~~g~w~l~~~~~gT~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  141 (146)
T d2d4ra1          83 -----FD-RYEGTWVFLPEGEGTRVVLTL----TYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERV  141 (146)
T ss_dssp             -----CS-EEEEEEEEEECSSSEEEEEEE----EEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----cc-eEEEEEEEEecCCceEEEEEE----EEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 11 133333333334444444444    334411334445555555555555555555555544