Citrus Sinensis ID: 026173

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLFVW
Secondary Structure (PSIPRED)
ccccccccccccccHHHHccccEEEEEEccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEHHHHHcEEEEccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEEEHHHHHHHHHHHHHHccccccccccEEcHHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
myvnncpknlgedrcvfhdhlgrfsfqprsenslfgpstatlkklgglsrnlvvyDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMaigfmpgidnmaHIGGFVAGILLGFILLLrpqygyvsgpyiapgyelnhkkpkyqchqKLLWVISVVVLFVW
Flexible Loop (DISEMBL)
myvnncpknlgeDRCVFHDHLGRFsfqprsenslfgpstatlkklgglsRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLFVW
Low Complexity Region (SEG)
MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIgllyvlsgfgggllSCLHQDESQQTLQIsvgasgalfgllgaslsEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLFVW
Disordered region (IsUnstruct)
*********LGEDRCVFHDHLGRFSFQ******LFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLFVW
Disordered Region (DISOPRED)
MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLFVW
Disordered Region (DISEMBL)
MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLFVW
Disordered Region (DISPRO)
*YVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLFVW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLFVW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q695T8	641	Rhomboid-like protease 4	N/A	no	0.640	0.241	0.356	6e-19
C8VCL5	503	Uncharacterized rhomboid	yes	no	0.623	0.300	0.325	1e-17
Q6GMF8	857	Inactive rhomboid protein	yes	no	0.586	0.165	0.331	1e-17
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.661	0.186	0.295	1e-15
Q499S9	856	Inactive rhomboid protein	yes	no	0.615	0.174	0.309	2e-15
Q00M95	827	Inactive rhomboid protein	yes	no	0.615	0.180	0.310	5e-15
Q6PJF5	856	Inactive rhomboid protein	yes	no	0.615	0.174	0.310	6e-15
A7YWH9	856	Inactive rhomboid protein	no	no	0.615	0.174	0.303	6e-15
B1MT31	855	Inactive rhomboid protein	N/A	no	0.661	0.187	0.284	8e-15
B0VX73	855	Inactive rhomboid protein	no	no	0.661	0.187	0.284	8e-15

>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 96/171 (56%), Gaps = 16/171 (9%)

Query: 30  SENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTN---SLAILFIG 86
           +  S   P+   L+ LGGL  N +    E +R F+ M++H   +H+L N    + IL+I 
Sbjct: 313 AATSWDSPNARVLRHLGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILWI- 371

Query: 87  VKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEII 146
             +E D+GFLR  LL+ L G  G LLS +    S     I+VG+SG+++ LLGA +   +
Sbjct: 372 --IEPDWGFLRTTLLFFLGGISGNLLSAVADPCS-----ITVGSSGSMYALLGALIPYCV 424

Query: 147 TNW-TLYTNKCVSITMLILVIGVNMAI-GFMPGIDNMAHIGGFVAGILLGF 195
             W ++    C+ + M++++IG+   + GF    DN AH+GG + GIL GF
Sbjct: 425 EYWKSIPRPGCILVFMIVVIIGILTGMAGF---TDNYAHMGGALGGILWGF 472

Putative serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.
Toxoplasma gondii (taxid: 5811)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5

>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN10929 PE=3 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 9/160 (5%)

Query: 58  EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQ 117
           + +RF   M+LH+  +H+  N L  + +G  +E   G+ R GL+Y+ SG  G +L   + 
Sbjct: 250 QWFRFIIPMFLHSGFVHIGFNLLVQMTMGADMERMIGWWRYGLVYLSSGIWGFVLGGNYA 309

Query: 118 DESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPG 177
            + +     S G SGALFG+L   + +++  W    N  V + +++L I V+  +G +PG
Sbjct: 310 GQGE----ASCGCSGALFGILALFVLDLLYGWNDRQNPWVELIIMVLGIAVSFVLGLLPG 365

Query: 178 IDNMAHIGGFVAGILLGFILL-----LRPQYGYVSGPYIA 212
           +DN +H+GGF  G+ LG  ++     LR + G    PY+A
Sbjct: 366 LDNFSHLGGFTMGLALGLCVMRSPNALRERIGLARSPYVA 405

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 15/157 (9%)

Query: 58  EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQ 117
           + YR +  ++LHA ++H L +    + I   LE+  G+LRI ++Y+LSG  G L S +  
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713

Query: 118 DESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPG 177
                  +  VG +G+ FG+L     E+I +W +      + T L+ V+    A G +P 
Sbjct: 714 -----PYRAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPW 768

Query: 178 IDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPG 214
           IDN AHI GF++G  L F  L          PYI+ G
Sbjct: 769 IDNFAHISGFISGFFLSFAFL----------PYISFG 795

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Danio rerio (taxid: 7955)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 23/183 (12%)

Query: 58  EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQ 117
           + YR +  ++LHA ++H L +    + +   LE+  G+ RI ++Y+LSG  G L S +  
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFL 712

Query: 118 DESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPG 177
                  +  VG +G+ FG+L     E+  +W +      +   L+ V+    A G +P 
Sbjct: 713 -----PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPW 767

Query: 178 IDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVV 237
           IDN AHI GFV+G+ L F  L          PYI+ G        K+  ++K   +I   
Sbjct: 768 IDNFAHISGFVSGLFLSFAFL----------PYISFG--------KFDLYRKRCQIIIFQ 809

Query: 238 VLF 240
           V+F
Sbjct: 810 VVF 812

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 16/165 (9%)

Query: 58  EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQ 117
           + YR +  ++LHA ++H L +    + +   LE+  G+ RI ++Y+LSG  G L S +  
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712

Query: 118 DESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPG 177
                  +  VG +G+ FG+L     E+  +W +      +   L+ V+    A G +P 
Sbjct: 713 -----PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPW 767

Query: 178 IDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPG-YELNHKK 221
           IDN AHI GFV+G+ L F  L          PYI+ G ++L  K+
Sbjct: 768 IDNFAHISGFVSGLFLSFAFL----------PYISFGKFDLYRKR 802

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Rattus norvegicus (taxid: 10116)

>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 15/164 (9%)

Query: 58  EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQ 117
           + YR +  ++LHA V+H L + +  + I   LE+  G+ RI ++++LSG  G L S +  
Sbjct: 624 QFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFL 683

Query: 118 DESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPG 177
                  +  VG +G+ FGLL     E+  +W L      +   L  ++      G +P 
Sbjct: 684 -----PYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLPW 738

Query: 178 IDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKK 221
           IDN+AHI GF++G+LL F  L          PYI  G    ++K
Sbjct: 739 IDNIAHIFGFLSGLLLAFAFL----------PYITFGTSDKYRK 772

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Canis familiaris (taxid: 9615)

>sp|Q6PJF5|RHDF2_HUMAN Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2

 Score = 81.3 bits (199), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 15/164 (9%)

Query: 58  EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQ 117
           + YR +  ++LHA V+H L + +  + I   LE+  G+ RI ++++LSG  G L S +  
Sbjct: 653 QFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFL 712

Query: 118 DESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPG 177
                  +  VG +G+ FGLL     E+  +W L      +   L  ++      G +P 
Sbjct: 713 -----PYRAEVGPAGSQFGLLACLFVELFQSWPLLERPWKAFLNLSAIVLFLFICGLLPW 767

Query: 178 IDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKK 221
           IDN+AHI GF++G+LL F  L          PYI  G    ++K
Sbjct: 768 IDNIAHIFGFLSGLLLAFAFL----------PYITFGTSDKYRK 801

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 16/165 (9%)

Query: 58  EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQ 117
           + YR +  ++LHA V+H L +    + +   LE+  G+ RI ++Y+LSG  G L S +  
Sbjct: 653 QFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712

Query: 118 DESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPG 177
                  +  VG +G+ FG+L     E+  +W +      +   L+ V+      G +P 
Sbjct: 713 -----PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPW 767

Query: 178 IDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPG-YELNHKK 221
           IDN AHI GF++G+ L F  L          PYI+ G ++L  K+
Sbjct: 768 IDNFAHISGFISGLFLSFAFL----------PYISFGKFDLYRKR 802

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Bos taurus (taxid: 9913)

>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 23/183 (12%)

Query: 58  EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQ 117
           + YR +  ++LHA ++H L +    + +   LE+  G+ RI ++Y+LSG  G L S +  
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 118 DESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPG 177
                  +  VG +G+ FG+L     E+  +W +      +   L+ V+      G +P 
Sbjct: 712 -----PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPW 766

Query: 178 IDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVV 237
           IDN AHI GF++G+ L F  L          PYI+ G        K+  ++K   +I   
Sbjct: 767 IDNFAHISGFISGLFLSFAFL----------PYISFG--------KFDLYRKRCQIIVFQ 808

Query: 238 VLF 240
           V+F
Sbjct: 809 VVF 811

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callicebus moloch (taxid: 9523)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 23/183 (12%)

Query: 58  EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQ 117
           + YR +  ++LHA ++H L +    + +   LE+  G+ RI ++Y+LSG  G L S +  
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 118 DESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPG 177
                  +  VG +G+ FG+L     E+  +W +      +   L+ V+      G +P 
Sbjct: 712 -----PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPW 766

Query: 178 IDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVV 237
           IDN AHI GF++G+ L F  L          PYI+ G        K+  ++K   +I   
Sbjct: 767 IDNFAHISGFISGLFLSFAFL----------PYISFG--------KFDLYRKRCQIIVFQ 808

Query: 238 VLF 240
           V+F
Sbjct: 809 VVF 811

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
297743435	289	unnamed protein product [Vitis vinifera]	0.966	0.809	0.631	8e-83
317106731	311	JHL06P13.7 [Jatropha curcas]	0.979	0.762	0.582	6e-78
356557245	324	PREDICTED: rhomboid-related protein 3-li	0.987	0.737	0.558	3e-76
124359588	324	Protein secE/sec61-gamma protein; Rhombo	0.991	0.740	0.550	2e-74
297847644	309	rhomboid family protein [Arabidopsis lyr	0.971	0.760	0.560	3e-74
357455203	345	hypothetical protein MTR_2g103600 [Medic	0.991	0.695	0.511	6e-73
15219034	309	RHOMBOID-like protein 5 [Arabidopsis tha	0.971	0.760	0.547	9e-73
225434919	391	PREDICTED: inactive rhomboid protein 1 [	0.962	0.595	0.556	7e-67
147818034	391	hypothetical protein VITISV_021082 [Viti	0.962	0.595	0.556	7e-67
297746062	316	unnamed protein product [Vitis vinifera]	0.962	0.737	0.556	7e-67

>gi|297743435|emb|CBI36302.3| unnamed protein product [Vitis vinifera]

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 151/239 (63%), Positives = 187/239 (78%), Gaps = 5/239 (2%)

Query: 1   MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
           MYVNNCP+  G DRCVF+ +LGRFSFQP SEN LFGPS  TL+KLG L + LVV +GE +
Sbjct: 53  MYVNNCPEKTGADRCVFNSYLGRFSFQPLSENPLFGPSPTTLEKLGALEKKLVVQEGEEW 112

Query: 61  RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES 120
           R  SC+WLHA  IHL+ N L++LFIGVKLE++FGFLRIGLLYV+SGFGG LLS LH  +S
Sbjct: 113 RLVSCIWLHAGAIHLIANMLSLLFIGVKLEQEFGFLRIGLLYVISGFGGSLLSALHLQKS 172

Query: 121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDN 180
                ISVGASGALFGLLGA LSE+  NWT+Y NKC ++  L+ V+ +N+A+GF+P +D+
Sbjct: 173 -----ISVGASGALFGLLGAMLSELFMNWTIYANKCAALMTLMFVVVLNLAVGFLPHVDS 227

Query: 181 MAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVL 239
            AHIGGF++G LLGFILL+RPQYGYVS  YI PGY+    K K++ +Q LLWV ++V L
Sbjct: 228 SAHIGGFLSGFLLGFILLVRPQYGYVSRKYIPPGYDGKRVKSKHKWYQYLLWVAALVAL 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106731|dbj|BAJ53227.1| JHL06P13.7 [Jatropha curcas]

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 141/242 (58%), Positives = 187/242 (77%), Gaps = 5/242 (2%)

Query: 1   MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
           MY N+CP   G D+C+F+++LGR+SFQP  EN++ GPS  TL+ LG L    V  +GE +
Sbjct: 53  MYDNDCPTYTGTDKCLFYEYLGRYSFQPFKENAVLGPSVITLELLGALDPLRVERNGEAW 112

Query: 61  RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES 120
           RFFSC+WLHA V+HLLTN +++LFIG+ LE++FGFLRIGLLYV+SGFGG L+S L  + +
Sbjct: 113 RFFSCIWLHAGVLHLLTNMISLLFIGIPLEQEFGFLRIGLLYVMSGFGGSLMSALSPEPN 172

Query: 121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDN 180
                ISVGASGALFGLLG+ LSE+  NWT Y NKC ++T L+L+IG+N++ G +P +DN
Sbjct: 173 -----ISVGASGALFGLLGSMLSELFLNWTTYVNKCKAVTSLLLIIGLNLSFGLIPHVDN 227

Query: 181 MAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLF 240
            AHIGGF++G LLGFILL+RPQYGYVS  YI  GY++  KKPK++C+Q LL++I+ V L 
Sbjct: 228 SAHIGGFLSGFLLGFILLMRPQYGYVSRRYIPAGYDMIKKKPKHKCYQYLLFIIASVALI 287

Query: 241 VW 242
            W
Sbjct: 288 FW 289

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557245|ref|XP_003546928.1| PREDICTED: rhomboid-related protein 3-like [Glycine max]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 139/249 (55%), Positives = 189/249 (75%), Gaps = 10/249 (4%)

Query: 1   MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
           MY N+CP  L E+ C+F  +LGRFSFQP  EN L GP+  TL+ LG L + LVV   E++
Sbjct: 52  MYENDCPAYLDEEVCLFSQYLGRFSFQPFRENPLLGPAIRTLRLLGALEKELVVDQNEVW 111

Query: 61  RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES 120
           RFFSCM+LHA V+HLL N  ++LFIGV+LE++FGFL+IGLLYVLSGFGG +LS LH  ES
Sbjct: 112 RFFSCMFLHAGVVHLLANMFSLLFIGVRLEKEFGFLKIGLLYVLSGFGGSVLSVLHLKES 171

Query: 121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNK--------CVSITMLILVIGVNMAI 172
           +    +SVGASGALFGLLGA LSE++TNW++Y NK        C ++T L++++G+N+A+
Sbjct: 172 EAN-TVSVGASGALFGLLGAMLSELLTNWSIYANKVLYPCLLQCAALTSLLIIVGLNLAV 230

Query: 173 GFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLW 232
           GF+P +DN AH+GGF+AG  LGF+LL+RPQYGYV+  YI PGY++  +K KY+ +Q    
Sbjct: 231 GFLPHVDNSAHVGGFLAGYFLGFVLLMRPQYGYVNRKYIPPGYDVK-RKSKYKWYQYFFL 289

Query: 233 VISVVVLFV 241
           ++SV++L +
Sbjct: 290 IMSVIILLL 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359588|gb|ABD28718.2| Protein secE/sec61-gamma protein; Rhomboid-like protein [Medicago truncatula]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/249 (55%), Positives = 188/249 (75%), Gaps = 9/249 (3%)

Query: 1   MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
           MY+N+CP  L ED C+++ +LG+FSFQP +EN L GPS  TL+ LG L R+LVV + E++
Sbjct: 51  MYINDCPGYLNEDDCLWYQYLGKFSFQPFNENPLLGPSVRTLRVLGALERDLVVGENEVW 110

Query: 61  RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES 120
           RF +CM+LHA VIHLL N  ++LFIGV+LE +FGFL+IG+LY+LSGFGG LLS LH  + 
Sbjct: 111 RFITCMFLHAGVIHLLANMFSLLFIGVRLENEFGFLKIGVLYLLSGFGGSLLSILHMGDV 170

Query: 121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNK--------CVSITMLILVIGVNMAI 172
           +    +SVGASGALFGLLGA LSE++TNWT+Y NK          ++T L+L+IG+N+A+
Sbjct: 171 KAPNTVSVGASGALFGLLGAMLSELLTNWTIYLNKGEKPLTVQFKALTSLLLIIGLNLAV 230

Query: 173 GFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLW 232
           GF+P +DN AHIGGF++G  LGF++L+RPQ+GYV+  YI PGY+   +K KY+ +Q    
Sbjct: 231 GFIPHVDNSAHIGGFLSGFFLGFVILMRPQFGYVNNKYIPPGYD-AKRKSKYKGYQYFFL 289

Query: 233 VISVVVLFV 241
           V+SV+ L +
Sbjct: 290 VLSVITLLI 298

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847644|ref|XP_002891703.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata] gi|297337545|gb|EFH67962.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/241 (56%), Positives = 179/241 (74%), Gaps = 6/241 (2%)

Query: 1   MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
           MYVN+CP     D C+  D LGR SFQP  EN L GPS  TL+KLG L R LV  +GE +
Sbjct: 51  MYVNDCPAR--SDECLLFDVLGRLSFQPIKENMLLGPSIPTLRKLGALERRLV-EEGERW 107

Query: 61  RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES 120
           R  SC+WLH   +HL+ N ++++ IG++LE++FGF+RIG LYV+SG GG L+SCL   + 
Sbjct: 108 RLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISGLGGSLMSCLTDSQG 167

Query: 121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDN 180
           ++   +SVGASGALFGLLGA LSE+ITNWT+Y NKC ++  L+L+I +N+++GF+P +DN
Sbjct: 168 ER---VSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLVLIIVLNLSVGFLPRVDN 224

Query: 181 MAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLF 240
            AH GGF+AG  LGF+LLLRPQYGYVS  YI PGY++ HKK K++C+Q +L   S+ VL 
Sbjct: 225 SAHFGGFLAGFFLGFVLLLRPQYGYVSPKYIPPGYDMKHKKSKHKCYQHILMYTSLAVLL 284

Query: 241 V 241
           V
Sbjct: 285 V 285

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455203|ref|XP_003597882.1| hypothetical protein MTR_2g103600 [Medicago truncatula] gi|355486930|gb|AES68133.1| hypothetical protein MTR_2g103600 [Medicago truncatula]

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 138/270 (51%), Positives = 189/270 (70%), Gaps = 30/270 (11%)

Query: 1   MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
           MY+N+CP  L ED C+++ +LG+FSFQP +EN L GPS  TL+ LG L R+LVV + E++
Sbjct: 51  MYINDCPGYLNEDDCLWYQYLGKFSFQPFNENPLLGPSVRTLRVLGALERDLVVGENEVW 110

Query: 61  RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES 120
           RF +CM+LHA VIHLL N  ++LFIGV+LE +FGFL+IG+LY+LSGFGG LLS LH  + 
Sbjct: 111 RFITCMFLHAGVIHLLANMFSLLFIGVRLENEFGFLKIGVLYLLSGFGGSLLSILHMGDV 170

Query: 121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNK------------------------- 155
           +    +SVGASGALFGLLGA LSE++TNWT+Y NK                         
Sbjct: 171 KAPNTVSVGASGALFGLLGAMLSELLTNWTIYLNKVLYNDIFCCLERKREKIHGVGVCAK 230

Query: 156 ----CVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYI 211
               C ++T L+L+IG+N+A+GF+P +DN AHIGGF++G  LGF++L+RPQ+GYV+  YI
Sbjct: 231 GQCSCAALTSLLLIIGLNLAVGFIPHVDNSAHIGGFLSGFFLGFVILMRPQFGYVNNKYI 290

Query: 212 APGYELNHKKPKYQCHQKLLWVISVVVLFV 241
            PGY+   +K KY+ +Q    V+SV+ L +
Sbjct: 291 PPGYD-AKRKSKYKGYQYFFLVLSVITLLI 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219034|ref|NP_175667.1| RHOMBOID-like protein 5 [Arabidopsis thaliana] gi|5903047|gb|AAD55606.1|AC008016_16 F6D8.20 [Arabidopsis thaliana] gi|332194705|gb|AEE32826.1| RHOMBOID-like protein 5 [Arabidopsis thaliana]

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 132/241 (54%), Positives = 177/241 (73%), Gaps = 6/241 (2%)

Query: 1   MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
           MYVN+CP     D C+  D LGR SFQP  EN L GPS  TL+KLG L R LV  +GE +
Sbjct: 51  MYVNDCPAR--SDECLLFDVLGRLSFQPIKENMLLGPSIPTLRKLGALERRLV-EEGERW 107

Query: 61  RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES 120
           R  SC+WLH   +HL+ N ++++ IG++LE++FGF+RIG LYV+SG GG L+SCL   + 
Sbjct: 108 RLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISGLGGSLVSCLTDSQG 167

Query: 121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDN 180
           ++   +SVGASGALFGLLGA LSE+ITNWT+Y NKC ++  LIL+I +N+++GF+P +DN
Sbjct: 168 ER---VSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLILIIVLNLSVGFLPRVDN 224

Query: 181 MAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLF 240
            AH GGF+AG  LGF+LLLRPQYGYV+  YI PGY++ HKK K++C+Q +    S+ +L 
Sbjct: 225 SAHFGGFLAGFFLGFVLLLRPQYGYVNPKYIPPGYDMKHKKSKHKCYQHIFRFTSLAILL 284

Query: 241 V 241
            
Sbjct: 285 A 285

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434919|ref|XP_002283488.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 134/241 (55%), Positives = 181/241 (75%), Gaps = 8/241 (3%)

Query: 1   MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
           M++NNCPKN     CV  D LGRFSFQP  EN L GPS++TL+K+G L  + VV+  +++
Sbjct: 76  MFINNCPKN--SVSCV-ADFLGRFSFQPLKENPLLGPSSSTLEKMGALEVSKVVHRHQVW 132

Query: 61  RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES 120
           R  SC+WLHA V H+L N L+++FIG++LE++FGF+RIGLLYV+SGFGG +LS L    S
Sbjct: 133 RLISCIWLHAGVFHVLANMLSLVFIGIRLEQEFGFVRIGLLYVVSGFGGSMLSSLFIQSS 192

Query: 121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDN 180
                ISVGASGALFGLLG  LSE+ITNWT+Y NK  ++  LIL+I VN+A+G +P +DN
Sbjct: 193 -----ISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLILIIIVNLAVGILPHVDN 247

Query: 181 MAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLF 240
            AHIGGFV+G LLGF+ L+RPQ+G+VS    +PG+     KPK++ +Q +LWV+S+++L 
Sbjct: 248 FAHIGGFVSGFLLGFVFLIRPQFGWVSQRNASPGHIAPSVKPKHKMYQYVLWVMSLILLT 307

Query: 241 V 241
           V
Sbjct: 308 V 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818034|emb|CAN64890.1| hypothetical protein VITISV_021082 [Vitis vinifera]

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 134/241 (55%), Positives = 181/241 (75%), Gaps = 8/241 (3%)

Query: 1   MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
           M++NNCPKN     CV  D LGRFSFQP  EN L GPS++TL+K+G L  + VV+  +++
Sbjct: 76  MFINNCPKN--SVSCV-ADFLGRFSFQPLKENPLLGPSSSTLEKMGALEVSKVVHRHQVW 132

Query: 61  RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES 120
           R  SC+WLHA V H+L N L+++FIG++LE++FGF+RIGLLYV+SGFGG +LS L    S
Sbjct: 133 RLISCIWLHAGVFHVLANMLSLVFIGIRLEQEFGFVRIGLLYVVSGFGGSMLSSLFIQSS 192

Query: 121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDN 180
                ISVGASGALFGLLG  LSE+ITNWT+Y NK  ++  LIL+I VN+A+G +P +DN
Sbjct: 193 -----ISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLILIIIVNLAVGILPHVDN 247

Query: 181 MAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLF 240
            AHIGGFV+G LLGF+ L+RPQ+G+VS    +PG+     KPK++ +Q +LWV+S+++L 
Sbjct: 248 FAHIGGFVSGFLLGFVFLIRPQFGWVSQRNASPGHIAXSVKPKHKMYQYVLWVMSLILLT 307

Query: 241 V 241
           V
Sbjct: 308 V 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746062|emb|CBI16118.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 134/241 (55%), Positives = 181/241 (75%), Gaps = 8/241 (3%)

Query: 1   MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
           M++NNCPKN     CV  D LGRFSFQP  EN L GPS++TL+K+G L  + VV+  +++
Sbjct: 1   MFINNCPKN--SVSCV-ADFLGRFSFQPLKENPLLGPSSSTLEKMGALEVSKVVHRHQVW 57

Query: 61  RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES 120
           R  SC+WLHA V H+L N L+++FIG++LE++FGF+RIGLLYV+SGFGG +LS L    S
Sbjct: 58  RLISCIWLHAGVFHVLANMLSLVFIGIRLEQEFGFVRIGLLYVVSGFGGSMLSSLFIQSS 117

Query: 121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDN 180
                ISVGASGALFGLLG  LSE+ITNWT+Y NK  ++  LIL+I VN+A+G +P +DN
Sbjct: 118 -----ISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLILIIIVNLAVGILPHVDN 172

Query: 181 MAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVLF 240
            AHIGGFV+G LLGF+ L+RPQ+G+VS    +PG+     KPK++ +Q +LWV+S+++L 
Sbjct: 173 FAHIGGFVSGFLLGFVFLIRPQFGWVSQRNASPGHIAPSVKPKHKMYQYVLWVMSLILLT 232

Query: 241 V 241
           V
Sbjct: 233 V 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2035190	309	RBL5 "RHOMBOID-like protein 5"	0.962	0.754	0.447	7.5e-57
TAIR|locus:2015193	317	RBL2 "RHOMBOID-like 2" [Arabid	0.950	0.725	0.432	5.8e-50
TAIR|locus:2066102	389	RBL1 "RHOMBOID-like 1" [Arabid	0.954	0.593	0.410	9.5e-50
TAIR|locus:2084465	394	RBL4 "RHOMBOID-like protein 4"	0.933	0.573	0.430	4.7e-48
TAIR|locus:2182925	346	RBL3 "RHOMBOID-like protein 3"	0.954	0.667	0.417	2.1e-45
TAIR|locus:2127258	313	RBL7 "RHOMBOID-like protein 7"	0.946	0.731	0.388	1.7e-43
TAIR|locus:2195067	307	RBL6 "RHOMBOID-like protein 6"	0.958	0.755	0.360	3.9e-37
TAIR|locus:2029376	351	KOM "KOMPEITO" [Arabidopsis th	0.396	0.273	0.428	2.4e-31
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.297	0.147	0.369	1.2e-14
ASPGD|ASPL0000065105	503	AN10929 [Emericella nidulans (	0.285	0.137	0.324	7.4e-09

TAIR|locus:2035190 RBL5 "RHOMBOID-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 107/239 (44%), Positives = 150/239 (62%)

Query:     1 MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
             MYVN+CP     D C+  D LGR SFQP  EN L GPS  TL+KLG L R LV  +GE +
Sbjct:    51 MYVNDCPAR--SDECLLFDVLGRLSFQPIKENMLLGPSIPTLRKLGALERRLVE-EGERW 107

Query:    61 RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIXXXXXXXXXXXXXXSCLHQDES 120
             R  SC+WLH   +HL+ N ++++ IG++LE++FGF+RI              SCL   + 
Sbjct:   108 RLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISGLGGSLVSCLTDSQG 167

Query:   121 QQTLQIXXXXXXXXXXXXXXXXXEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDN 180
             ++   +                 E+ITNWT+Y NKC ++  LIL+I +N+++GF+P +DN
Sbjct:   168 ER---VSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLILIIVLNLSVGFLPRVDN 224

Query:   181 MAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVL 239
              AH GGF+AG  LGF+LLLRPQYGYV+  YI PGY++ HKK K++C+Q +    S+ +L
Sbjct:   225 SAHFGGFLAGFFLGFVLLLRPQYGYVNPKYIPPGYDMKHKKSKHKCYQHIFRFTSLAIL 283

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2015193 RBL2 "RHOMBOID-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 105/243 (43%), Positives = 149/243 (61%)

Query:     1 MYVNNCPKNL-GEDR-CVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGE 58
             M+VN+CPK + G ++ CV    LGRFSFQP  EN LFGPS++TL+K+G L    VV++ +
Sbjct:    51 MFVNDCPKKITGPNKECVAR-FLGRFSFQPLKENPLFGPSSSTLEKMGALEWRKVVHEHQ 109

Query:    59 IYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIXXXXXXXXXXXXXXSCLHQD 118
              +R  SCMWLHA +IHLLTN L+++FIG++LE+ FGF+R+              S L   
Sbjct:   110 GWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSILSSLFLQ 169

Query:   119 ESQQTLQIXXXXXXXXXXXXXXXXXEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGI 178
             ES     I                 E++TNWT+Y NK  ++  L+ +I +N+A+G +P +
Sbjct:   170 ES-----ISVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLALGMLPRV 224

Query:   179 DNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVV 238
             DN AHIGGF+ G  LGF+LL+RPQYG+      A     +  K KY  +Q +L+V+SVV+
Sbjct:   225 DNFAHIGGFLTGFCLGFVLLVRPQYGWE-----ASRTNTSRTKRKYSMYQYVLFVVSVVL 279

Query:   239 LFV 241
             L V
Sbjct:   280 LVV 282

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2066102 RBL1 "RHOMBOID-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 98/239 (41%), Positives = 144/239 (60%)

Query:     1 MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
             M++NNCPKN     C+    LGRF+FQP  EN L GPS+ TL+K+G L  ++VV+  E++
Sbjct:    74 MFINNCPKNSAY--CLAR-FLGRFAFQPMKENPLLGPSSLTLEKMGALDVSMVVHKHEVW 130

Query:    61 RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIXXXXXXXXXXXXXXSCLHQDES 120
             R F+C+WLHA V H+L N L+++FIG++LE++FGF+RI              S L     
Sbjct:   131 RLFTCIWLHAGVFHVLANMLSLIFIGIRLEQEFGFVRIGLLYMISGFGGSLLSSLFNRAG 190

Query:   121 QQTLQIXXXXXXXXXXXXXXXXXEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDN 180
                  I                 E++TNWT+Y NK  ++  LI +I +N+A+G +P +DN
Sbjct:   191 -----ISVGASGALFGLLGAMLSELLTNWTIYANKFAALLTLIFIIAINLAVGILPHVDN 245

Query:   181 MAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVL 239
              AH+GGF +G LLGF+ L+RPQYGY +      GY     K K++ +Q +LW+ S+V+L
Sbjct:   246 FAHLGGFTSGFLLGFVFLIRPQYGYFNQRNNPRGYAAPSAKSKHKPYQYVLWITSLVLL 304

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2084465 RBL4 "RHOMBOID-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 103/239 (43%), Positives = 139/239 (58%)

Query:     1 MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
             MYVNNCPK  G+  C F D LGRFSFQ   EN L GPS+ TL+ +GGL    VV   E +
Sbjct:    84 MYVNNCPKKSGD--C-FADFLGRFSFQNTRENPLLGPSSLTLQTMGGLDVKKVVKGDEGW 140

Query:    61 RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIXXXXXXXXXXXXXXSCLHQDES 120
             R  SC WLH  V+HLL N L +LFIG+++E +FGF+RI              S L    +
Sbjct:   141 RLLSCNWLHGGVVHLLMNMLTLLFIGIRMEREFGFIRIGLLYLISGFGGSILSALFLRSN 200

Query:   121 QQTLQIXXXXXXXXXXXXXXXXXEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDN 180
                  I                 EI  NWT+Y+NK V+I  L+L++ VN+ +G +PG+DN
Sbjct:   201 -----ISVGASGAVFGLLGGMLSEIFINWTIYSNKVVTIVTLVLIVAVNLGLGVLPGVDN 255

Query:   181 MAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVVL 239
              AHIGGF  G LLGF+LL+RP YG+++     PG     K  +++ +Q +LW IS+++L
Sbjct:   256 FAHIGGFATGFLLGFVLLIRPHYGWINQRN-GPGA----KPHRFKIYQGILWTISLLIL 309

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2182925 RBL3 "RHOMBOID-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 101/242 (41%), Positives = 141/242 (58%)

Query:     1 MYVNNCPKNLGEDRCVFH---DHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDG 57
             M+VNNCP +    R   H     LGR SF+P   N LFGPS+ TL+KLG L  + VV   
Sbjct:    73 MFVNNCPNHFESHRLRGHCVAKFLGRLSFEPLRTNPLFGPSSHTLEKLGALEWSKVVEKK 132

Query:    58 EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIXXXXXXXXXXXXXXSCLHQ 117
             E +R  +C+WLHA VIHL  N L+++FIG++LE+ FGF+RI              S L  
Sbjct:   133 EGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGSVLSSLFI 192

Query:   118 DESQQTLQIXXXXXXXXXXXXXXXXXEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPG 177
               S     I                 E+ TNWT+Y+NK  ++  L+ VI +N+AIG +P 
Sbjct:   193 RNS-----ISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFVILINLAIGILPH 247

Query:   178 IDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVV 237
             +DN AH+GGFV G LLGFILL RPQ+ +++  ++  G  L +K   Y+ +Q LLW++S+V
Sbjct:   248 VDNFAHVGGFVTGFLLGFILLARPQFKWLAREHMPQGTPLRYK---YKTYQYLLWLLSLV 304

Query:   238 VL 239
             +L
Sbjct:   305 LL 306

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2127258 RBL7 "RHOMBOID-like protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 94/242 (38%), Positives = 139/242 (57%)

Query:     1 MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
             MY N+CP      RC+    LGRFSF+    N L GPS++TL+K+G L+   +V+  +++
Sbjct:    49 MYYNDCPHK--SHRCLAK-FLGRFSFESFKSNPLLGPSSSTLEKMGALAWGKIVHKRQVW 105

Query:    61 RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIXXXXXXXXXXXXXXSCLHQDES 120
             R  +CMWLHA VIHLL N   + +IGV+LE+ FGF+R+              SCL  +++
Sbjct:   106 RLLTCMWLHAGVIHLLANMCCVAYIGVRLEQQFGFVRVGTIYLVSGFCGSILSCLFLEDA 165

Query:   121 QQTLQIXXXXXXXXXXXXXXXXXEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDN 180
                  I                 E++ NWT Y NK V+I ML++++GVN+ +G +P +DN
Sbjct:   166 -----ISVGASSALFGLLGAMLSELLINWTTYDNKGVAIVMLLVIVGVNLGLGTLPPVDN 220

Query:   181 MAHIGGFVAGILLGFILLLRPQYGYVSGPY-IAPGYELNHKKPKYQCHQKLLWVISVVVL 239
              AHIGGF  G LLGF+LL+ PQ+ +      + PG  +   KPKY   Q +L +++ +V 
Sbjct:   221 FAHIGGFFGGFLLGFLLLIHPQFEWEENQVSLMPGTIV---KPKYNTCQLVLCIVASIV- 276

Query:   240 FV 241
             FV
Sbjct:   277 FV 278

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2195067 RBL6 "RHOMBOID-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 87/241 (36%), Positives = 124/241 (51%)

Query:     1 MYVNNCPKNL--GEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGE 58
             MY N+CPK        CV    L RFSFQP  EN   GPS++TL+KLG L    VV   E
Sbjct:    38 MYTNDCPKTTTGANGDCVAK-LLRRFSFQPLRENPFLGPSSSTLEKLGALDWKKVVQGNE 96

Query:    59 IYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIXXXXXXXXXXXXXXSCLHQD 118
              +R  + MWLHA +IHL+ N   ++  G++LE+ FGF+RI              S L   
Sbjct:    97 KWRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGFIRIGLIYLISGFGGSILSALFLQ 156

Query:   119 ESQQTLQIXXXXXXXXXXXXXXXXXEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGI 178
             +S     I                 E++TNWT+Y +K  ++   + +I +N+AIG +P +
Sbjct:   157 KS-----ISVGASGALLGLMGAMLSELLTNWTIYKSKLCALLSFLFIIAINLAIGLLPWV 211

Query:   179 DNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVISVVV 238
             DN AHIGG + G  LGFILL++PQ G+      +  Y    +     C   L +V +V+V
Sbjct:   212 DNFAHIGGLLTGFCLGFILLMQPQSGWEEFRNSSQ-YGARARSKYNPCQYVLFFVAAVLV 270

Query:   239 L 239
             +
Sbjct:   271 V 271

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2029376 KOM "KOMPEITO" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
 Identities = 42/98 (42%), Positives = 60/98 (61%)

Query:     1 MYVNNCPKNLGEDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIY 60
             M VN+C  N     C     LGRFSFQ  SEN + GPS +TL+ +GGLS   +  + EI+
Sbjct:    66 MGVNDCSGN-SHGHCSAK-LLGRFSFQSLSENPMLGPSASTLEHMGGLSWKALTENHEIW 123

Query:    61 RFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRI 98
             R  +  WLH+ + HL  N  +++F+G+ +E+ FG LRI
Sbjct:   124 RILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRI 161

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 125 (49.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 27/73 (36%), Positives = 44/73 (60%)

Query:    26 FQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFI 85
             F+P   N  FGP++ TL  +G     L++ +GE +RFF+ ++LH  + H L N +  L +
Sbjct:   261 FEPWKTNPWFGPNSYTLLDVGAKYSPLIL-NGEWWRFFTPIFLHVGIFHYLMNMVTQLRV 319

Query:    86 GVKLEEDFGFLRI 98
             G++LE  +G  RI
Sbjct:   320 GMQLERAYGGHRI 332

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

ASPGD|ASPL0000065105 AN10929 [Emericella nidulans (taxid:162425)]

 Score = 132 (51.5 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query:   144 EIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILL----- 198
             +++  W    N  V + +++L I V+  +G +PG+DN +H+GGF  G+ LG  ++     
Sbjct:   332 DLLYGWNDRQNPWVELIIMVLGIAVSFVLGLLPGLDNFSHLGGFTMGLALGLCVMRSPNA 391

Query:   199 LRPQYGYVSGPYIA 212
             LR + G    PY+A
Sbjct:   392 LRERIGLARSPYVA 405

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	2e-41
COG0705	228	COG0705, COG0705, Membrane associated serine prote	2e-19
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	5e-15
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	8e-08

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  138 bits (349), Expect = 2e-41
 Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 4/150 (2%)

Query: 53  VVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLL 112
           ++  G+++R  + M+LHA  +HLL N LA+LF G+ LE   G +R  LLY+LSG  G LL
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 113 SCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAI 172
           S L           SVGASGA+FGLLGA L  +  N  L  N   ++ +L+ +I +N+ +
Sbjct: 61  SYLFS----PASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLLL 116

Query: 173 GFMPGIDNMAHIGGFVAGILLGFILLLRPQ 202
           GF+PGI N AH+GG +AG+LLGF+LL RPQ
Sbjct: 117 GFLPGISNFAHLGGLIAGLLLGFLLLRRPQ 146

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 83.3 bits (206), Expect = 2e-19
 Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 9/149 (6%)

Query: 58  EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQ 117
           +++R  + ++LHA  +HLL N LA+   G  LE   G LR  L Y+LSG   GL   L  
Sbjct: 67  QLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFG 126

Query: 118 DESQQTLQISVGASGALFGLLGASL----SEIITNWTLYTNKCVSITMLILVIG--VNMA 171
            +       S+GASGA+FGLLGA         I    L   +   I +LI ++    + A
Sbjct: 127 PKGG---APSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGA 183

Query: 172 IGFMPGIDNMAHIGGFVAGILLGFILLLR 200
             F P +   AH+GG + G+LL  +L  +
Sbjct: 184 GSFGPSVAWSAHLGGLIGGLLLAALLSRK 212

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 72.2 bits (177), Expect = 5e-15
 Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 8/143 (5%)

Query: 57  GEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLH 116
           GEI+R    ++LHAN+ H   N    L +G  LE+++G ++I +LY L+G  G +LS   
Sbjct: 100 GEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILS--- 156

Query: 117 QDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFM- 175
              S     I VGAS +  GLLG   SE+I  W +  ++   +  +I    ++    F  
Sbjct: 157 --SSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTF 214

Query: 176 --PGIDNMAHIGGFVAGILLGFI 196
               ID++ H+GG ++GI +G +
Sbjct: 215 NGSNIDHVGHLGGLLSGISMGIL 237

Length = 278

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 24/153 (15%)

Query: 56  DGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCL 115
           +GE +R  +  ++H N  HLL N   +L + +  E      R+ LL +L      L   L
Sbjct: 13  EGEWWRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERHLRARRLLLLLLLLSLLISLGLLL 72

Query: 116 HQDESQQTLQISVGASGALFGLLGASLSEIITN-----WTLYTNKCVSITMLILVIGVNM 170
                  +LQ  VG SG L GL        I       W L       +  +I  +    
Sbjct: 73  ----FLPSLQWYVGLSGVLHGLFAWGALRDIRYGRRSGWLL-------LLGVIAKLAWEQ 121

Query: 171 AIGFMPGIDNM--------AHIGGFVAGILLGF 195
             G       +        AH+ G ++G+LL  
Sbjct: 122 LFGASASTAELIGAPVATEAHLAGALSGLLLAL 154

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	100.0
PTZ00101	278	rhomboid-1 protease; Provisional	100.0
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.93
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.91
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.91
COG0705	228	Membrane associated serine protease [Amino acid tr	99.9
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.68
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.45
KOG2980	310	consensus Integral membrane protease of the rhombo	98.12
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	97.9
KOG2890	326	consensus Predicted membrane protein [Function unk	97.48
KOG0858	239	consensus Predicted membrane protein [Function unk	96.97
KOG4463	323	consensus Uncharacterized conserved protein [Funct	95.01
COG5291	313	Predicted membrane protein [Function unknown]	86.95

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-38  Score=278.11  Aligned_cols=225  Identities=49%  Similarity=0.819  Sum_probs=199.8

Q ss_pred             CCcCCCCCCCC---CCcchhccccccceeccCCCCCCCCCCHHHHHHccccCcccccccCceeeeeeeccccccHHHHHH
Q 026173            1 MYVNNCPKNLG---EDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLT   77 (242)
Q Consensus         1 ~~~~~~p~~~~---~~~~~~~~~~~~f~~~~~~~n~~l~p~~~~l~~~G~~~~~~i~~~~q~wRllTs~f~H~~~~HL~~   77 (242)
                      |+.|+||.+..   +..|+-..++++|.+++.++||..+|+..++...++..-+....++|+||++||+|+|+|+.||.+
T Consensus        58 ~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~  137 (316)
T KOG2289|consen   58 MYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLL  137 (316)
T ss_pred             eeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCceecChhhhchhHHHHHHHHHhcCHHHHHH
Confidence            68899998555   667883459999999999999999999989999999888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 026173           78 NSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCV  157 (242)
Q Consensus        78 N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~  157 (242)
                      ||+.+..+|..+|..+|.+|+.++|+++|++|+++++++.++.     ++|||||++||++|+.++.+..||..++.+..
T Consensus       138 N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~-----~sVGASggvfaLlgA~Ls~l~~Nw~~m~~~~~  212 (316)
T KOG2289|consen  138 NMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNS-----ISVGASGGVFALLGAHLSNLLTNWTIMKNKFA  212 (316)
T ss_pred             HHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCC-----ceecccHHHHHHHHHHHHHHHhhHHHhcchHH
Confidence            9999999999999999999999999999999999999999988     89999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcccCCccCCCCCCCCCCCCCCCccchhhHHHHHHHH
Q 026173          158 SITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVIS  235 (242)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~  235 (242)
                      .+..+++++.+++..|+.|.+++++|+||++.|..+++....+.+..+.......     -|++.|++..|...|+..
T Consensus       213 ~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~-----~~~~~~~~~~q~~~w~~~  285 (316)
T KOG2289|consen  213 ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIV-----LRVFSKRLPYQLLLWIVL  285 (316)
T ss_pred             HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEEecccee-----eeccccccccchHHHHHH
Confidence            8888888889999999999999999999999999999999999888887765554     234444444444444433

>PTZ00101 rhomboid-1 protease; Provisional

Probab=100.00  E-value=1e-31  Score=233.24  Aligned_cols=163  Identities=31%  Similarity=0.519  Sum_probs=133.4

Q ss_pred             CCCCCCCCHHHHHHccccCcccccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhH
Q 026173           31 ENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGG  110 (242)
Q Consensus        31 ~n~~l~p~~~~l~~~G~~~~~~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~  110 (242)
                      ++..++|+++.+.++|+++++.+ .++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|+..+|+++|+.|+
T Consensus        75 ~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~  153 (278)
T PTZ00101         75 PADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGN  153 (278)
T ss_pred             ccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence            34457899999999999998655 68999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCCCCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH--HHHhc-CChhhHHHHHHHH
Q 026173          111 LLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVN--MAIGF-MPGIDNMAHIGGF  187 (242)
Q Consensus       111 l~~~l~~~~~~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~v~~~aHlgG~  187 (242)
                      +++..+.+..     .++||||++||++|+.++.....|...+.+......++.+.++.  +.... .|++|+.||+||+
T Consensus       154 l~s~~~~~~~-----~svGASgAifGLiGa~~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~  228 (278)
T PTZ00101        154 ILSSSVTYCP-----IKVGASTSGMGLLGIVTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGL  228 (278)
T ss_pred             HHHHHHccCC-----cEEehhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence            9998877665     78999999999999998877777665544333322222222222  22222 3789999999999


Q ss_pred             HHHHHHHHHHhh
Q 026173          188 VAGILLGFILLL  199 (242)
Q Consensus       188 l~G~~~g~~~~~  199 (242)
                      ++|+++|..+.+
T Consensus       229 i~G~llg~~~~~  240 (278)
T PTZ00101        229 LSGISMGILYNS  240 (278)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998755

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.93  E-value=1.9e-25  Score=194.40  Aligned_cols=142  Identities=20%  Similarity=0.244  Sum_probs=106.9

Q ss_pred             cccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechH
Q 026173           52 LVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGAS  131 (242)
Q Consensus        52 ~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaS  131 (242)
                      ....++||||++|++|+|.|+.|+++||+++|.+|..+|+.+|++|++.+|+++++.|++...++.+.      ..+|+|
T Consensus       128 ~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~~------~~gGaS  201 (276)
T PRK10907        128 DPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSGP------WFGGLS  201 (276)
T ss_pred             cccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccc------hhhHHH
Confidence            34468999999999999999999999999999999999999999999999999999999998877543      578999


Q ss_pred             HHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhh
Q 026173          132 GALFGLLGASLSEIITNWTL-YTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLL  199 (242)
Q Consensus       132 g~i~Gl~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~  199 (242)
                      |+++|++|+....-...... ...+...+...++++++.....+.+++++.||++|+++|+++|+...+
T Consensus       202 GvVygL~g~~~~~~~~~p~~~~~lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        202 GVVYALMGYVWLRGERDPQSGIYLPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             HHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999864321111000 000112222223333222222234689999999999999999988754

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.91  E-value=3.8e-25  Score=174.83  Aligned_cols=144  Identities=43%  Similarity=0.700  Sum_probs=105.3

Q ss_pred             ccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechHHHH
Q 026173           55 YDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGAL  134 (242)
Q Consensus        55 ~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaSg~i  134 (242)
                      +++|+||++||+|+|.|+.|++.|++.++.+|..+|+.+|++++..+|+.+++.+++.+.++.+...    +.+|+||++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~----~~~G~Sg~~   77 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQ----PYVGASGAV   77 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S---------SSHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhcccccccccc----ccCCCcccc
Confidence            6899999999999999999999999999999999999999999999999999999999988876652    689999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccc
Q 026173          135 FGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQ  202 (242)
Q Consensus       135 ~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~~~  202 (242)
                      +|++++.......+++....+..........+...+..+..+++++.+|++|+++|++++..+.+|++
T Consensus        78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~~  145 (145)
T PF01694_consen   78 FGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRPQ  145 (145)
T ss_dssp             HHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH---
T ss_pred             hHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999986655544333322111111111122233333346899999999999999999999887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-24  Score=194.56  Aligned_cols=193  Identities=27%  Similarity=0.418  Sum_probs=167.0

Q ss_pred             cCCCCCCCC-CCcchh-ccccccceeccCCCCCCCCCCHHHHHHccccCc-ccccccCceeeeeeeccccccHHHHHHHH
Q 026173            3 VNNCPKNLG-EDRCVF-HDHLGRFSFQPRSENSLFGPSTATLKKLGGLSR-NLVVYDGEIYRFFSCMWLHANVIHLLTNS   79 (242)
Q Consensus         3 ~~~~p~~~~-~~~~~~-~~~~~~f~~~~~~~n~~l~p~~~~l~~~G~~~~-~~i~~~~q~wRllTs~f~H~~~~HL~~N~   79 (242)
                      +..=|||-+ .+.|-. +.++|.|.-..+.||..++++..++....|+-| -.--...|+||++||+|+|+|++|++..+
T Consensus       392 ItGRPCCI~~qG~CeIttreYCdFmrG~~HEeAtLCSQVhC~d~VCGllPFln~e~PdQfYRL~~SLFlHagviH~~vSi  471 (652)
T KOG2290|consen  392 ITGRPCCIGTQGLCEITTREYCDFMRGYFHEEATLCSQVHCFDGVCGLLPFLNPEVPDQFYRLWLSLFLHAGVIHLLVSI  471 (652)
T ss_pred             ecCCcceeccCceeeechHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHhhHHHHHHHH
Confidence            344577777 555541 478999999999999999999999998766544 23335789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 026173           80 LAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSI  159 (242)
Q Consensus        80 ~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~  159 (242)
                      ..+..+-..+|+..|+.|+.++|++||+.||+.+..+.+..     +.||.||+=+|+++..++.++.+|+...+++..+
T Consensus       472 ~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~-----~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~  546 (652)
T KOG2290|consen  472 CFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYR-----AEVGPAGSQFGILACLFVELFQSWQILERPWRAF  546 (652)
T ss_pred             HHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccc-----cccCCcccccchHHHHHHHHHhhhHhhhhHHHHH
Confidence            99999999999999999999999999999999999999887     8999999999999999999999999988887777


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcc
Q 026173          160 TMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRP  201 (242)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~~  201 (242)
                      .-++..+++..+ |+.|-+|+++|+.|++.|++.++++++.-
T Consensus       547 ~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~~~~PYi  587 (652)
T KOG2290|consen  547 FHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSIIFLPYI  587 (652)
T ss_pred             HHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHhhccc
Confidence            666665555444 89999999999999999999999998743

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.90  E-value=2.8e-23  Score=176.76  Aligned_cols=143  Identities=32%  Similarity=0.522  Sum_probs=113.6

Q ss_pred             ceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechHHHHHHH
Q 026173           58 EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGL  137 (242)
Q Consensus        58 q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaSg~i~Gl  137 (242)
                      |+||++|++|+|.|+.|+++||+.++.+|..+|+.+|+.+++.+|+.+|+.+++.+..+.+...   .+++||||+++|+
T Consensus        67 ~~w~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~---~~~~GASG~i~gl  143 (228)
T COG0705          67 QLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGG---APSLGASGAIFGL  143 (228)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHccccc---CcccchhHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999888876652   2789999999999


Q ss_pred             HHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHHHHHHHHHhhcccC
Q 026173          138 LGASLSEIITNWTLYT---NKCVSITMLILVIGVNMAIGFMP---GIDNMAHIGGFVAGILLGFILLLRPQY  203 (242)
Q Consensus       138 ~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~v~~~aHlgG~l~G~~~g~~~~~~~~~  203 (242)
                      ++++.......+....   ........+...+..++..+...   ++++.+|++|++.|.+++..+.++.+.
T Consensus       144 lga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~~  215 (228)
T COG0705         144 LGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLRK  215 (228)
T ss_pred             HHHHHHHccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9998643222111111   22333444555555555555443   699999999999999999888765443

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.68  E-value=4.3e-17  Score=138.22  Aligned_cols=147  Identities=20%  Similarity=0.266  Sum_probs=108.9

Q ss_pred             cccccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhHHhhhcccC----CCCCCc
Q 026173           50 RNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFG-FLRIGLLYVLSGFGGGLLSCLHQD----ESQQTL  124 (242)
Q Consensus        50 ~~~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G-~~~~l~lyl~~gi~g~l~~~l~~~----~~~~~~  124 (242)
                      ++...++.|.||++||+++|.+..|+++||+.+|..|..+|+.+| +.+++..+...++..+++..+...    ....+.
T Consensus        44 ~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~  123 (258)
T KOG2632|consen   44 PSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYV  123 (258)
T ss_pred             CHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence            346678999999999999999999999999999999999999999 888888888888888888877642    111112


Q ss_pred             ceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 026173          125 QISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFI  196 (242)
Q Consensus       125 ~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~  196 (242)
                      ...+|.|+..|++++......-...+...........+.++..+....-..|+.|+.+|++|+++|+++++.
T Consensus       124 ~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  124 EGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             cccccccHHHHHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            246999999999998864321111111111111223444555544444467999999999999999999984

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.45  E-value=1.8e-07  Score=69.57  Aligned_cols=82  Identities=22%  Similarity=0.272  Sum_probs=65.7

Q ss_pred             ceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcc-------cCCCCCCcceeech
Q 026173           58 EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLH-------QDESQQTLQISVGA  130 (242)
Q Consensus        58 q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~-------~~~~~~~~~~~vGa  130 (242)
                      ..||++|+.|++.++..++.|.+.++..|+.+|+.+|+++++-.....++.+|+...+.       ..+...-+.+.-|.
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~   86 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF   86 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence            79999999999999999999999999999999999999999998888888888766653       12211011356677


Q ss_pred             HHHHHHHHH
Q 026173          131 SGALFGLLG  139 (242)
Q Consensus       131 Sg~i~Gl~g  139 (242)
                      +|.+.|++.
T Consensus        87 ~~~~~g~lV   95 (99)
T PF08551_consen   87 MGVLAGFLV   95 (99)
T ss_pred             HHhHhheEE
Confidence            777777643

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=98.12  E-value=1.8e-06  Score=75.22  Aligned_cols=145  Identities=21%  Similarity=0.277  Sum_probs=92.9

Q ss_pred             cCceeeeeeeccccccHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechHHHH
Q 026173           56 DGEIYRFFSCMWLHANVIHLLTNSLAILFIGV-KLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGAL  134 (242)
Q Consensus        56 ~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~-~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaSg~i  134 (242)
                      .---|.+++|.|-|.+.+|+-.||+.++.+.. ...-..|.-.+..+|+.++..|......-. .......+..||||++
T Consensus       152 ~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~i~~~~~-v~~~~~gp~LGAsGav  230 (310)
T KOG2980|consen  152 KTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLFISVKDK-VPTSWAGPSLGASGAV  230 (310)
T ss_pred             cccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccceeEeecc-ccccccccccccchHH
Confidence            34556799999999999999999999888877 667788888999999966666655443321 1101112789999999


Q ss_pred             HHHHHHHHHHHHhhhhhhh-----hhHHHHHHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHHHHHHhhccc
Q 026173          135 FGLLGASLSEIITNWTLYT-----NKCVSITMLILVIGVNMAIGFM--PGIDNMAHIGGFVAGILLGFILLLRPQ  202 (242)
Q Consensus       135 ~Gl~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~v~~~aHlgG~l~G~~~g~~~~~~~~  202 (242)
                      +++++.. ..++++.+.+-     -+......+-.+...++....+  ..-|+.+|++|-+.|...+.....|-+
T Consensus       231 ~ai~a~~-~~lfP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri~  304 (310)
T KOG2980|consen  231 YAILALD-CTLFPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARIR  304 (310)
T ss_pred             HHHHHHH-hhcCcCcceeEEEeecccccchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHHH
Confidence            9998877 34444433211     1111111111111111111111  245677999999999999988866443

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=97.90  E-value=0.00013  Score=60.79  Aligned_cols=68  Identities=21%  Similarity=0.225  Sum_probs=50.5

Q ss_pred             cCcccccccCceeeeeeeccccccH-HHHHHHHHHHHHHHHHHHHh-hhh--HHHHHHHHHHHHHhHHhhhc
Q 026173           48 LSRNLVVYDGEIYRFFSCMWLHANV-IHLLTNSLAILFIGVKLEED-FGF--LRIGLLYVLSGFGGGLLSCL  115 (242)
Q Consensus        48 ~~~~~i~~~~q~wRllTs~f~H~~~-~HL~~N~~~l~~~G~~lE~~-~G~--~~~l~lyl~~gi~g~l~~~l  115 (242)
                      .+++.+.++.|+||++|+.|.-++. .+.++|+..++..+..+|+. ++.  ..++...+.+++.-.+.+.+
T Consensus        31 ~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~  102 (197)
T PF04511_consen   31 FDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLL  102 (197)
T ss_pred             ECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3445667889999999999986544 79999999999999999998 333  35666655555555555543

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=97.48  E-value=0.00029  Score=61.58  Aligned_cols=140  Identities=18%  Similarity=0.211  Sum_probs=90.9

Q ss_pred             CceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhc-------ccCCCCCCcceeec
Q 026173           57 GEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCL-------HQDESQQTLQISVG  129 (242)
Q Consensus        57 ~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l-------~~~~~~~~~~~~vG  129 (242)
                      ...|+++|+.|+-.+++..+.|.+.+..-|..+|+.||+..++..|.+.-...++....       +..+...-+.+..|
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G  144 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG  144 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence            47999999999999999999999999999999999999999988876554333322211       12222222236789


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhhHH-------HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccc
Q 026173          130 ASGALFGLLGASLSEIITNWTLYTNKCV-------SITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQ  202 (242)
Q Consensus       130 aSg~i~Gl~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~~~  202 (242)
                      ..|.+.|++.++ -.+.+......-+..       .+..++..+++.+.     .-...+.+..+..|...++.+++--+
T Consensus       145 ~~gilaGilVa~-kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~-----~f~~f~~l~s~~~g~~~sWtYLRfyq  218 (326)
T KOG2890|consen  145 TTGILAGILVAW-KQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSII-----TFLVFASLPSITFGVLVSWTYLRFYQ  218 (326)
T ss_pred             chHHHHHHHHHH-HHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHH-----HHHHhhhhHHHHHhhhhhhhhheecc
Confidence            999999998876 344444322211111       11122222222221     23556677777888888888876433

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=96.97  E-value=0.00053  Score=58.12  Aligned_cols=67  Identities=16%  Similarity=0.124  Sum_probs=53.7

Q ss_pred             cCcccccccCceeeeeeecccccc-HHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHhHHhhh
Q 026173           48 LSRNLVVYDGEIYRFFSCMWLHAN-VIHLLTNSLAILFIGVKLEEDF---GFLRIGLLYVLSGFGGGLLSC  114 (242)
Q Consensus        48 ~~~~~i~~~~q~wRllTs~f~H~~-~~HL~~N~~~l~~~G~~lE~~~---G~~~~l~lyl~~gi~g~l~~~  114 (242)
                      .+++.++++.|+||++|+.+.-.. -+|.++||+.++.-..++|+-.   .+..++.+.+.+++.-.+.+.
T Consensus        42 ~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   42 LNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             ecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            455678899999999999998866 6899999999999999999843   235777777777777665443

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.01  E-value=0.0051  Score=52.92  Aligned_cols=60  Identities=17%  Similarity=0.228  Sum_probs=51.3

Q ss_pred             ccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhc
Q 026173           55 YDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCL  115 (242)
Q Consensus        55 ~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l  115 (242)
                      +..||||++.+.|...+--.++.-.+.++.+ ..+||.+|+.|+..+-+.++..+.++.+.
T Consensus        47 ~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~i  106 (323)
T KOG4463|consen   47 KYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVI  106 (323)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHH
Confidence            4589999999999999999998888887766 88999999999988888888777665554

>COG5291 Predicted membrane protein [Function unknown]

Probab=86.95  E-value=0.36  Score=41.39  Aligned_cols=45  Identities=18%  Similarity=0.287  Sum_probs=36.6

Q ss_pred             cccccCceeeeeeecccccc-HHHHHHHHHHHHHHHHHHHH-hhhhH
Q 026173           52 LVVYDGEIYRFFSCMWLHAN-VIHLLTNSLAILFIGVKLEE-DFGFL   96 (242)
Q Consensus        52 ~i~~~~q~wRllTs~f~H~~-~~HL~~N~~~l~~~G~~lE~-~~G~~   96 (242)
                      ..+++.||||++|+-..-++ -+..++|++.++--..++|+ .+++.
T Consensus        53 L~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~   99 (313)
T COG5291          53 LFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS   99 (313)
T ss_pred             hHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence            55688999999997776654 57999999999999999998 34444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	7e-37
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	2e-30

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  127 bits (321), Expect = 7e-37
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 7/152 (4%)

Query: 52  LVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGL 111
               D E++R+ S   +H + +H+L N       G  +E  FG +++ +LYV++    G 
Sbjct: 43  YEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGY 102

Query: 112 LSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMA 171
           +                G SG ++ +LG        N  L+       TML++ I +   
Sbjct: 103 VQNYVSG------PAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFI 156

Query: 172 IGFM-PGIDNMAHIGGFVAGILLGFILLLRPQ 202
                  + N AHI G + G++ GFI     +
Sbjct: 157 SPLFGVEMGNAAHISGLIVGLIWGFIDSKLRK 188

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score =  110 bits (277), Expect = 2e-30
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 34  LFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDF 93
                   +  L            E +R+F+   +H +++H+L N L   ++G  +E+  
Sbjct: 22  QILGDQEVMLWLAWP--FDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL 79

Query: 94  GFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYT 153
           G  ++ ++ ++S    G +                G SG ++ L+G        +     
Sbjct: 80  GSGKLIVITLISALLSGYVQQKFSG------PWFGGLSGVVYALMGYVWLRGERDPQSGI 133

Query: 154 NKCVSITMLILVIGVNMAIG-FMPGIDNMAHIGGFVAGILLGFIL 197
                + +  L+  V      F   + N AHI G   G+ + F+ 
Sbjct: 134 YLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.94
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.94

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.94  E-value=9.3e-27  Score=190.61  Aligned_cols=151  Identities=19%  Similarity=0.228  Sum_probs=112.5

Q ss_pred             HHHccccCcccccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCC
Q 026173           42 LKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQ  121 (242)
Q Consensus        42 l~~~G~~~~~~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~  121 (242)
                      ..++.+.+|. ...++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+.+++.+++.+.++.++  
T Consensus        29 ~~~~~~~~p~-~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~--  105 (181)
T 2xov_A           29 VMLWLAWPFD-PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--  105 (181)
T ss_dssp             HHHHHSSCCS-GGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred             HHHhhcCChh-hccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence            4455566663 4578999999999999999999999999999999999999999999999999999999999887654  


Q ss_pred             CCcceeechHHHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhh
Q 026173          122 QTLQISVGASGALFGLLGASLSEIITNWTL-YTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLL  199 (242)
Q Consensus       122 ~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~  199 (242)
                          .++|+||+++|++++.......+.+. ...+........+.++..+.....+++|+.+|++|+++|++++..+.|
T Consensus       106 ----~~vGaSGai~gl~g~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          106 ----WFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             ----CCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CceeHHHHHHHHHHHHHHHHhhCcCceeeeHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence                47999999999999875321111111 000112222222222222221123589999999999999999988765

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.94  E-value=1.4e-27  Score=197.91  Aligned_cols=156  Identities=24%  Similarity=0.350  Sum_probs=114.2

Q ss_pred             HHHHccccCcccccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCC
Q 026173           41 TLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES  120 (242)
Q Consensus        41 ~l~~~G~~~~~~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~  120 (242)
                      .+.++.+..|.. +.++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+.+++.+++.+.++.++ 
T Consensus        33 ~~~~~~~~~p~~-~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~-  110 (196)
T 2nr9_A           33 DIMYLMHYPAYE-EQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGP-  110 (196)
T ss_dssp             HHHHHHSCCCSG-GGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred             HHHHhhcCCHhh-cccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence            345556666644 478999999999999999999999999999999999999999999999999999999999887654 


Q ss_pred             CCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHHHhh
Q 026173          121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIG-FMPGIDNMAHIGGFVAGILLGFILLL  199 (242)
Q Consensus       121 ~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~aHlgG~l~G~~~g~~~~~  199 (242)
                           .++|+||+++|++++....-..+.+....+........+.+...+... ..+++|+.||++|+++|++++..+.+
T Consensus       111 -----~~vGaSGai~gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~  185 (196)
T 2nr9_A          111 -----AFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK  185 (196)
T ss_dssp             -----CCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CeeeHHHHHHHHHHHHHHHHHhcchhhcchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence                 479999999999997653221111110001111111111122222211 12489999999999999999998876


Q ss_pred             cccC
Q 026173          200 RPQY  203 (242)
Q Consensus       200 ~~~~  203 (242)
                      +++.
T Consensus       186 ~~~~  189 (196)
T 2nr9_A          186 LRKN  189 (196)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            5443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	4e-15
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	4e-15

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 69.0 bits (168), Expect = 4e-15
 Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 7/145 (4%)

Query: 53  VVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLL 112
                E +R+F+   +H +++H+L N L   ++G  +E+  G  ++ ++ ++S    G +
Sbjct: 39  PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYV 98

Query: 113 SCLHQDESQQTLQISVGASGALFGLLGA-SLSEIITNWTLYTNKCVSITMLILVIGVNMA 171
                           G SG ++ L+G   L       +    +   I   ++ I     
Sbjct: 99  QQKFSGPW------FGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWF 152

Query: 172 IGFMPGIDNMAHIGGFVAGILLGFI 196
             F   + N AHI G   G+ + F+
Sbjct: 153 DLFGMSMANGAHIAGLAVGLAMAFV 177

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 69.0 bits (168), Expect = 4e-15
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 7/152 (4%)

Query: 52  LVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGL 111
               D E++R+ S   +H + +H+L N       G  +E  FG +++ +LYV++    G 
Sbjct: 40  YEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGY 99

Query: 112 LSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMA 171
           +       +  +     G SG ++ +LG        N  L+       TML++ I +   
Sbjct: 100 VQ------NYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFI 153

Query: 172 IGFM-PGIDNMAHIGGFVAGILLGFILLLRPQ 202
                  + N AHI G + G++ GFI     +
Sbjct: 154 SPLFGVEMGNAAHISGLIVGLIWGFIDSKLRK 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.93
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.93

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.93  E-value=1.9e-27  Score=193.85  Aligned_cols=155  Identities=25%  Similarity=0.358  Sum_probs=117.2

Q ss_pred             HHHHHHccccCcccccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccC
Q 026173           39 TATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQD  118 (242)
Q Consensus        39 ~~~l~~~G~~~~~~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~  118 (242)
                      ++.+......+ .....++||||++|+.|+|.|+.|+++||+.++.+|..+|+.+|+++++.+|+.+++.|++.+.+..+
T Consensus        28 ~~~~~~~~~~~-~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~  106 (189)
T d2nr9a1          28 EDDIMYLMHYP-AYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSG  106 (189)
T ss_dssp             HHHHHHHHSCC-CSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHcc-ccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC
Confidence            34454444443 46678999999999999999999999999999999999999999999999999999999999887765


Q ss_pred             CCCCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHHH
Q 026173          119 ESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIG-FMPGIDNMAHIGGFVAGILLGFIL  197 (242)
Q Consensus       119 ~~~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~aHlgG~l~G~~~g~~~  197 (242)
                      +      +.+|+||+++|++++.......++.....+......+...+.+.+... ..+++|+.||++|+++|+++|+..
T Consensus       107 ~------~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~  180 (189)
T d2nr9a1         107 P------AFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFID  180 (189)
T ss_dssp             S------CCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             C------CcccchHHHHHHHHHHHHHHHHhhhHhccHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence            4      579999999999998765544444332222111111222222222222 246899999999999999999988


Q ss_pred             hhc
Q 026173          198 LLR  200 (242)
Q Consensus       198 ~~~  200 (242)
                      .++
T Consensus       181 ~~~  183 (189)
T d2nr9a1         181 SKL  183 (189)
T ss_dssp             HHH
T ss_pred             Hcc
Confidence            653

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3e-25  Score=179.20  Aligned_cols=151  Identities=19%  Similarity=0.209  Sum_probs=114.5

Q ss_pred             HHHHHccccCcccccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCC
Q 026173           40 ATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDE  119 (242)
Q Consensus        40 ~~l~~~G~~~~~~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~  119 (242)
                      ++..++...+. +...++||||++||+|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+.+++.|++++.++.++
T Consensus        27 ~~~~~~~~~~~-~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~  105 (180)
T d3b45a1          27 QEVMLWLAWPF-DPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP  105 (180)
T ss_dssp             HHHHHHHSSCC-SGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHcCCC-cccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhcc
Confidence            44555655544 55679999999999999999999999999999999999999999999999999999999999888765


Q ss_pred             CCCCcceeechHHHHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 026173          120 SQQTLQISVGASGALFGLLGASLSEIITNWTLYTN-KCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFIL  197 (242)
Q Consensus       120 ~~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~  197 (242)
                            ...|+||+++|++++.......+...... +....................+++++.||++|+++|+++++..
T Consensus       106 ------~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         106 ------WFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             ------CCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ------ccccccchHHHHHHHHHHHhhhcchhHHhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence                  57899999999999886543333222111 1111222222222222222347899999999999999998764