Citrus Sinensis ID: 026190

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MSLAVGALSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHccccccccccccccccEEEEEEEEEEcccccEEEEccccccccccEEEEccccEEEEEEEEEEccEEEEccEEEEEEEEEEEEEcccccEEEEcccccccEEEcccccccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccccccccccccccccccccccccccccHHHHccccHHccccccccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccccEEEEEEEEEEEcccccEEEEccccccccccEEEEEcccEEEEEEEEEEccccEEEEEEEEEEEEccEEEEEEEEEEEEEccccccEEEEcccEEccccHHHcEEEEEEEEEEcccccccEEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
mslavgalsssnnmvdekrdegensnvavgaaepanlqeeqrtsryvtvsetdeeddddreqdiqlgpqytlkeqiekdkdDESLRKWKEQLLGsvdfdnigetlepEVRILSLSivapgrndivlavpedgkpagnwftlkegskysLKFTFEVSNNIVSGLKYTNTVWKAGIkvdsakqmlgtfspqpepyihempeettpsgmfargsysartkfldddnkcyleINYSFDIRKEWAAV
Flexible Loop (DISEMBL)
mslavgalsssnnmvdekrdeGENSNVAVGaaepanlqeeqrtsryvtvsetdeeddddreqdiqlgpqytlkeqiekdkddesLRKWKEQllgsvdfdnigeTLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTkfldddnkcYLEINYSFDIRKEWAAV
Low Complexity Region (SEG)
MSLAVGALSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSetdeeddddreqdIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV
Disordered region (IsUnstruct)
***************************************************************************************WKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAK*******************************YSARTKFLDDDNKCYLEINYSFDIRKEW***
Disordered Region (DISOPRED)
*******************************************************************************KDDESLRKWKEQLLGSVD*****ETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA**
Disordered Region (DISEMBL)
*************************NVAVGAAEPANLQ***********************QDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV
Disordered Region (DISPRO)
**************************************************************DIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLAVGALSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q9SFC6	240	Rho GDP-dissociation inhi	yes	no	0.797	0.804	0.794	2e-89
Q61599	200	Rho GDP-dissociation inhi	yes	no	0.768	0.93	0.394	9e-29
Q9TU03	200	Rho GDP-dissociation inhi	yes	no	0.756	0.915	0.404	1e-28
P52566	201	Rho GDP-dissociation inhi	yes	no	0.698	0.840	0.412	3e-27
P19803	204	Rho GDP-dissociation inhi	no	no	0.756	0.897	0.370	5e-27
Q5XI73	204	Rho GDP-dissociation inhi	no	no	0.756	0.897	0.370	7e-27
Q99PT1	204	Rho GDP-dissociation inhi	no	no	0.756	0.897	0.370	7e-27
Q4R4J0	204	Rho GDP-dissociation inhi	N/A	no	0.756	0.897	0.370	7e-27
P52565	204	Rho GDP-dissociation inhi	no	no	0.756	0.897	0.370	7e-27
Q95UQ1	197	Putative rho GDP-dissocia	yes	no	0.706	0.868	0.366	7e-26

>sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1

 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 155/195 (79%), Positives = 174/195 (89%), Gaps = 2/195 (1%)

Query: 48  TVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEP 107
           ++  T+EE+DDD +  +QLGPQYT+KE +EKDKDDESLRKWKEQLLGSVD  NIGETL+P
Sbjct: 48  SLCATEEEEDDDSK--LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDP 105

Query: 108 EVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
           EVRI SL+I++PGR DIVL VPE+G P G WFTLKEGSKY+LKFTF V+NNIVSGL+YTN
Sbjct: 106 EVRIDSLAIISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTN 165

Query: 168 TVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYL 227
           TVWK G+KVD AK+MLGTFSPQ EPY H MPEETTPSGMFARGSYSARTKFLDDDNKCYL
Sbjct: 166 TVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYL 225

Query: 228 EINYSFDIRKEWAAV 242
           EINYSFDIRKEW A+
Sbjct: 226 EINYSFDIRKEWPAL 240

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Arabidopsis thaliana (taxid: 3702)

>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1 SV=3

 Score =  127 bits (318), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 115/195 (58%), Gaps = 9/195 (4%)

Query: 51  ETDEEDDD-DREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEV 109
           + +E DDD D + + +  PQ +LKE  E DKDDESL K+K+ LLG V    + +   P V
Sbjct: 9   QLEEADDDLDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPV--VADPTVPNV 66

Query: 110 RILSLSIV---APGRNDIVLAVPEDGKP-AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKY 165
            +  LS+V   APG   I + +  D +    + F LKEG +Y +K  F+V+ +IVSGLKY
Sbjct: 67  TVTRLSLVCDSAPGP--ITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKY 124

Query: 166 TNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKC 225
               ++ G++VD A  M+G++ P+PE Y    P E  P GM ARG+Y  ++ F DDD + 
Sbjct: 125 VQHTYRTGMRVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQD 184

Query: 226 YLEINYSFDIRKEWA 240
           +L   ++  I+K+W 
Sbjct: 185 HLTWEWNLAIKKDWT 199

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 112/193 (58%), Gaps = 10/193 (5%)

Query: 54  EEDDD--DREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRI 111
           EEDDD  D + + +  PQ +LKE  E DKDDESL K+K+ LLG  D   + +   P V +
Sbjct: 11  EEDDDELDGKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DGPVVADPTAPNVTV 68

Query: 112 LSLSIV---APGRNDIVLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
             L++V   APG   I + +  D +      F LKEG +Y +K  F+V+ +IVSGLKY  
Sbjct: 69  TRLTLVCESAPGP--ITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDIVSGLKYVQ 126

Query: 168 TVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYL 227
             ++ G+KVD A  M+G++ P+PE Y    P E  P GM ARG+Y  ++ F DDD   +L
Sbjct: 127 HTYRTGVKVDKATFMVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKSFFTDDDKHDHL 186

Query: 228 EINYSFDIRKEWA 240
              ++  I+K+W 
Sbjct: 187 TWEWNLSIKKDWT 199

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1 SV=3

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 8/177 (4%)

Query: 68  PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
           PQ +LKE  E DKDDESL K+K+ LLG  D   + +   P V +  L++V   APG   I
Sbjct: 28  PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPG--PI 83

Query: 125 VLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQML 183
            + +  D +        LKEGS+Y +K  F+V+ +IVSGLKY    ++ G+KVD A  M+
Sbjct: 84  TMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMV 143

Query: 184 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 240
           G++ P+PE Y    P E  P GM ARG+Y  ++ F DDD + +L   ++  I+KEW 
Sbjct: 144 GSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWT 200

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 6/189 (3%)

Query: 54  EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
           E ++D+   + +   Q +++E  E DKDDESLRK+KE LLG V      +   P V +  
Sbjct: 17  ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTR 74

Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
           L++V   APG  ++ L    +     + F LKEG +Y +K +F V+  IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 171 KAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 230
           + G+K+D    M+G++ P+ E Y    P E  P GM ARGSY+ +++F DDD   +L   
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWE 193

Query: 231 YSFDIRKEW 239
           ++  I+KEW
Sbjct: 194 WNLTIKKEW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia PE=1 SV=1

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 6/189 (3%)

Query: 54  EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
           E ++D+   + +   Q +++E  E DKDDESLRK+KE LLG V      +   P V +  
Sbjct: 17  ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVIVTR 74

Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
           L++V   APG  ++ L    +     + F LKEG +Y +K +F V+  IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 171 KAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 230
           + G+K+D    M+G++ P+ E Y    P E  P GM ARGSY+ +++F DDD   +L   
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWE 193

Query: 231 YSFDIRKEW 239
           ++  I+KEW
Sbjct: 194 WNLTIKKEW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1 SV=3

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 6/189 (3%)

Query: 54  EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
           E ++D+   + +   Q +++E  E DKDDESLRK+KE LLG V      +   P V +  
Sbjct: 17  ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVIVTR 74

Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
           L++V   APG  ++ L    +     + F LKEG +Y +K +F V+  IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 171 KAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 230
           + G+K+D    M+G++ P+ E Y    P E  P GM ARGSY+ +++F DDD   +L   
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWE 193

Query: 231 YSFDIRKEW 239
           ++  I+KEW
Sbjct: 194 WNLTIKKEW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 6/189 (3%)

Query: 54  EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
           E ++D+   + +   Q +++E  E DKDDESLRK+KE LLG V      +   P V +  
Sbjct: 17  ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTG 74

Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
           L++V   APG  ++ L    +     + F LKEG +Y +K +F V+  IVSG+KY    +
Sbjct: 75  LTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 171 KAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 230
           + G+K+D    M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L   
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWE 193

Query: 231 YSFDIRKEW 239
           ++  I+K+W
Sbjct: 194 WNLTIKKDW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Macaca fascicularis (taxid: 9541)

>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 6/189 (3%)

Query: 54  EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
           E ++D+   + +   Q +++E  E DKDDESLRK+KE LLG V      +   P V +  
Sbjct: 17  ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTG 74

Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
           L++V   APG  ++ L    +     + F LKEG +Y +K +F V+  IVSG+KY    +
Sbjct: 75  LTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 171 KAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 230
           + G+K+D    M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L   
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWE 193

Query: 231 YSFDIRKEW 239
           ++  I+K+W
Sbjct: 194 WNLTIKKDW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium discoideum GN=rdiA PE=1 SV=1

 Score =  117 bits (293), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 104/183 (56%), Gaps = 12/183 (6%)

Query: 67  GPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVL 126
           G   ++ +  ++D +DE+L+++KE LLG+       +  +  ++ + + I   GR D + 
Sbjct: 17  GKHVSVDQLKQQDAEDEALKRYKESLLGTGVHAPKDDPRKLVIKEMKIQI--EGRPDTIY 74

Query: 127 AVPEDGKP-----AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQ 181
             P D K          F LKE   Y +  TF + ++IVSGLK TNTV++ GIKV + K 
Sbjct: 75  --PLDTKELIKEMKTKPFVLKESCHYKITLTFNIQHDIVSGLKQTNTVYRKGIKVSTEKH 132

Query: 182 MLGTFSPQPEPYIHEMPE---ETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKE 238
           MLG+F+PQ   +    P    E  PSGM ARGSY+A+  F DDDN+ +L + Y+F I+ +
Sbjct: 133 MLGSFAPQALAHSVTNPRHGWEEAPSGMLARGSYTAKVVFTDDDNEEHLSVEYAFSIKSD 192

Query: 239 WAA 241
           W +
Sbjct: 193 WKS 195

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them (By similarity). Regulates the Rac-dependent signaling pathways controlling cytokinesis, actin reorganization and the contractile vacuole. Required for efficient accumulation of cap at the cell cortex.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
255583030	246	Rho GDP-dissociation inhibitor, putative	1.0	0.983	0.686	4e-95
449453577	240	PREDICTED: rho GDP-dissociation inhibito	0.971	0.979	0.680	1e-89
297829346	241	rho GDP-dissociation inhibitor family pr	0.797	0.800	0.805	4e-89
255559076	243	Rho GDP-dissociation inhibitor, putative	0.983	0.979	0.662	2e-88
388508888	242	unknown [Lotus japonicus]	0.987	0.987	0.658	9e-88
15231890	240	Rho GDP-dissociation inhibitor 1 [Arabid	0.797	0.804	0.794	1e-87
224064864	220	predicted protein [Populus trichocarpa]	0.892	0.981	0.704	2e-87
224131764	205	predicted protein [Populus trichocarpa]	0.818	0.965	0.765	4e-86
449443560	259	PREDICTED: rho GDP-dissociation inhibito	0.983	0.918	0.637	5e-85
224137328	257	predicted protein [Populus trichocarpa]	0.987	0.929	0.650	6e-85

>gi|255583030|ref|XP_002532283.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis] gi|223528017|gb|EEF30098.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis]

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 169/246 (68%), Positives = 207/246 (84%), Gaps = 4/246 (1%)

Query: 1   MSLAVGALSSSNNM-VDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVT---VSETDEED 56
           MSLAV + S ++NM +D+ ++E E S  +    E  +    ++ +R ++   +S  +E++
Sbjct: 1   MSLAVSSSSGTSNMGLDDNKNEEEKSETSHEHLEEGDSAAGEKYARQMSETDLSVNEEDE 60

Query: 57  DDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSI 116
           D++    I+LGPQ TLKE +EKDKDDESLRKWKEQLLGSVDF++IGETLEPEV+ILSLSI
Sbjct: 61  DEEGSHKIELGPQCTLKEHLEKDKDDESLRKWKEQLLGSVDFESIGETLEPEVKILSLSI 120

Query: 117 VAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKV 176
           ++PGR+DIVL+VPEDGKP G+WFTLKEGS Y+L F+F+VSNNIVSGLKYTNTVWK G+KV
Sbjct: 121 ISPGRSDIVLSVPEDGKPKGSWFTLKEGSHYNLMFSFQVSNNIVSGLKYTNTVWKTGVKV 180

Query: 177 DSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR 236
           DSAK+MLGTFSPQPEPY H MPEETTPSGMFARGSYSA++KFLDDDNKCYLEINY+FDIR
Sbjct: 181 DSAKEMLGTFSPQPEPYTHVMPEETTPSGMFARGSYSAKSKFLDDDNKCYLEINYTFDIR 240

Query: 237 KEWAAV 242
           KEWAA 
Sbjct: 241 KEWAAT 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453577|ref|XP_004144533.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] gi|449515967|ref|XP_004165019.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 168/247 (68%), Positives = 197/247 (79%), Gaps = 12/247 (4%)

Query: 1   MSLAVGALSSSNNM-VDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSETD----EE 55
           MSLAVGA S+S NM  DE R+EG       GA +    + E        +SET     E+
Sbjct: 1   MSLAVGAASNSKNMGFDENREEG-------GALDNHGNENEATEKISRQMSETSLSATED 53

Query: 56  DDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLS 115
           + DD   +I+LGPQ TLKE++EKDKDDESLR+WKEQLLG+VD +N GETLEPEV+ILSLS
Sbjct: 54  ETDDEGSNIELGPQRTLKEELEKDKDDESLRRWKEQLLGAVDLENAGETLEPEVKILSLS 113

Query: 116 IVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIK 175
           IV+P R D+VL +PEDG P G WFTLKEGS+YSLKF+F+V+NNIV+GLKYTNTVWK G+K
Sbjct: 114 IVSPERPDLVLPIPEDGNPKGLWFTLKEGSRYSLKFSFQVTNNIVAGLKYTNTVWKTGVK 173

Query: 176 VDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDI 235
           VDSAK+MLGTFSPQ E Y H MPE+TTPSGMFARGSYSAR+KFLDDDNKCYLEINY+FDI
Sbjct: 174 VDSAKEMLGTFSPQLETYTHVMPEDTTPSGMFARGSYSARSKFLDDDNKCYLEINYTFDI 233

Query: 236 RKEWAAV 242
           RK+WAA 
Sbjct: 234 RKDWAAT 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829346|ref|XP_002882555.1| rho GDP-dissociation inhibitor family protein [Arabidopsis lyrata subsp. lyrata] gi|297328395|gb|EFH58814.1| rho GDP-dissociation inhibitor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 157/195 (80%), Positives = 176/195 (90%), Gaps = 2/195 (1%)

Query: 48  TVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEP 107
           ++  T+EE+DDD +  +QLGPQYT+KE +EKDKDDESLRKWKEQLLGSVD  NIGETL+P
Sbjct: 49  SLCATEEEEDDDSK--LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDP 106

Query: 108 EVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
           EVRILSL+I++PGR DIVL VPE+G P G WFTLKEGSKY+LKFTF+V+NNIVSGL+YTN
Sbjct: 107 EVRILSLAILSPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFQVNNNIVSGLRYTN 166

Query: 168 TVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYL 227
           TVWK G+KVD AK+MLGTFSPQ EPY H MPEETTPSGMFARGSYSARTKFLDDDNKCYL
Sbjct: 167 TVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYL 226

Query: 228 EINYSFDIRKEWAAV 242
           EINYSFDIRKEW AV
Sbjct: 227 EINYSFDIRKEWPAV 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559076|ref|XP_002520560.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis] gi|223540220|gb|EEF41793.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 161/243 (66%), Positives = 198/243 (81%), Gaps = 5/243 (2%)

Query: 5   VGALSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQ-----RTSRYVTVSETDEEDDDD 59
           +G+  +++  V E +     S  AVGA E   + E +     R     ++  TD+E++DD
Sbjct: 1   MGSDENNSEEVSETKTASAKSPSAVGAEEQHRVDESKIGGLSRQMSESSIYATDQEEEDD 60

Query: 60  REQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAP 119
            E+ I+LGPQYTLKEQ+EKDKDDESLR+WKEQLLGSVD + +GETL+PEV+I+SL+I +P
Sbjct: 61  EERKIELGPQYTLKEQLEKDKDDESLRRWKEQLLGSVDINAVGETLDPEVKIISLAIKSP 120

Query: 120 GRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSA 179
           GR+DIVL++PEDG P G WFTLKEGS+YSL+FTF+V NNIVSGLKYTNTVWK G+KVDSA
Sbjct: 121 GRDDIVLSIPEDGNPKGTWFTLKEGSRYSLQFTFQVGNNIVSGLKYTNTVWKTGVKVDSA 180

Query: 180 KQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
           K+MLGTFSPQ EPY HEMPEETTPSG+FARGSYSAR+KF+DDDNKCYLEINY+FDIRKEW
Sbjct: 181 KEMLGTFSPQAEPYTHEMPEETTPSGIFARGSYSARSKFVDDDNKCYLEINYTFDIRKEW 240

Query: 240 AAV 242
            + 
Sbjct: 241 QST 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508888|gb|AFK42510.1| unknown [Lotus japonicus]

 Score =  328 bits (842), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 160/243 (65%), Positives = 194/243 (79%), Gaps = 4/243 (1%)

Query: 1   MSLAVGALSSSNNM-VDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSET--DEEDD 57
           MSLA+G +S+  +M  D+ +   +    A+  A   +   E+  +R+V+ S     E+DD
Sbjct: 1   MSLAIGVVSNCKSMGFDDDKHNVDTGKTAIDYAS-GDEHHERNLTRHVSESSIAITEDDD 59

Query: 58  DDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV 117
           DD E+ I+LGPQ TLKEQ+EKDKDDESLR+WKEQLLGSVD + +GETLEPEV+ILSL+I 
Sbjct: 60  DDLERKIELGPQVTLKEQLEKDKDDESLRRWKEQLLGSVDVNAVGETLEPEVKILSLAIK 119

Query: 118 APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVD 177
           +PGR+DIVL VPE G P G WFTLKEGS+YSL FTF+V +NIVSGLKY NTVWK GIKVD
Sbjct: 120 SPGRDDIVLPVPETGNPPGLWFTLKEGSRYSLMFTFQVGHNIVSGLKYINTVWKTGIKVD 179

Query: 178 SAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRK 237
           S K+M+GTFSPQ EPY HEMPEETTPSG+FARG+YSARTKF+DDDNK YLEINY+FDIRK
Sbjct: 180 STKEMIGTFSPQAEPYTHEMPEETTPSGIFARGTYSARTKFVDDDNKMYLEINYTFDIRK 239

Query: 238 EWA 240
           +W 
Sbjct: 240 DWV 242

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231890|ref|NP_187445.1| Rho GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|21759146|sp|Q9SFC6.1|GDIR_ARATH RecName: Full=Rho GDP-dissociation inhibitor 1; Short=AtRhoGDI1; Short=Rho GDI-1 gi|6648200|gb|AAF21198.1|AC013483_22 putative RHO GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|15866274|gb|AAL10299.1|AF412276_1 Rho GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|21553639|gb|AAM62732.1| putative RHO GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|26451537|dbj|BAC42866.1| putative RHO GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|28973347|gb|AAO63998.1| putative RHO GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|332641093|gb|AEE74614.1| Rho GDP-dissociation inhibitor 1 [Arabidopsis thaliana]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/195 (79%), Positives = 174/195 (89%), Gaps = 2/195 (1%)

Query: 48  TVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEP 107
           ++  T+EE+DDD +  +QLGPQYT+KE +EKDKDDESLRKWKEQLLGSVD  NIGETL+P
Sbjct: 48  SLCATEEEEDDDSK--LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDP 105

Query: 108 EVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
           EVRI SL+I++PGR DIVL VPE+G P G WFTLKEGSKY+LKFTF V+NNIVSGL+YTN
Sbjct: 106 EVRIDSLAIISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTN 165

Query: 168 TVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYL 227
           TVWK G+KVD AK+MLGTFSPQ EPY H MPEETTPSGMFARGSYSARTKFLDDDNKCYL
Sbjct: 166 TVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYL 225

Query: 228 EINYSFDIRKEWAAV 242
           EINYSFDIRKEW A+
Sbjct: 226 EINYSFDIRKEWPAL 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064864|ref|XP_002301589.1| predicted protein [Populus trichocarpa] gi|222843315|gb|EEE80862.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 160/227 (70%), Positives = 185/227 (81%), Gaps = 11/227 (4%)

Query: 16  DEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSETDEEDDDDREQDIQLGPQYTLKEQ 75
           DE  D GE +   +  +E         TS Y T  E  EEDD+     IQLGPQYTLKEQ
Sbjct: 5   DEDHDGGERTERQMSESE---------TSLYATDHE--EEDDEGGSNKIQLGPQYTLKEQ 53

Query: 76  IEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPA 135
           +EKDKDDESLRKWKEQLLGSVD + IGETLEP+V+ LSLSI++PGR DIVL++PE+G+P 
Sbjct: 54  LEKDKDDESLRKWKEQLLGSVDLNTIGETLEPDVKFLSLSILSPGRPDIVLSIPENGRPR 113

Query: 136 GNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIH 195
           G WFTLKEGS Y+LKF+F+VSNNIVSGLKYTNTVWK G+KVDS+K+MLGT+SPQPEPY H
Sbjct: 114 GLWFTLKEGSPYNLKFSFQVSNNIVSGLKYTNTVWKTGLKVDSSKEMLGTYSPQPEPYTH 173

Query: 196 EMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV 242
              +ETTPSG+FARGSYSAR+KFLDDDNKCYLEINY+FDIRKEWAA 
Sbjct: 174 MNAQETTPSGIFARGSYSARSKFLDDDNKCYLEINYTFDIRKEWAAT 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131764|ref|XP_002321172.1| predicted protein [Populus trichocarpa] gi|222861945|gb|EEE99487.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/200 (76%), Positives = 174/200 (87%), Gaps = 2/200 (1%)

Query: 40  EQRTSRYVTVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFD 99
           E  TS Y T  E  EEDD++    +QLGPQYTLKEQ+EKDKDDESLRKWKEQLLGSVD +
Sbjct: 8   ESETSMYATDHE--EEDDENGTNKLQLGPQYTLKEQLEKDKDDESLRKWKEQLLGSVDLN 65

Query: 100 NIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNI 159
           NIGETLEP+V+ L+LSI++PGR DIVL++PE+GKP G WFTLKEGS +SLKF+F+VSNNI
Sbjct: 66  NIGETLEPDVKFLNLSILSPGRPDIVLSIPENGKPKGLWFTLKEGSPHSLKFSFQVSNNI 125

Query: 160 VSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFL 219
           VSGLKYTNTVWK G+KVDS K+MLGT+SPQPE Y H  PEETTPSGMFARGSYSAR+KF 
Sbjct: 126 VSGLKYTNTVWKTGVKVDSTKEMLGTYSPQPEAYTHVNPEETTPSGMFARGSYSARSKFF 185

Query: 220 DDDNKCYLEINYSFDIRKEW 239
           DDDNKCYLEINY+F IRKEW
Sbjct: 186 DDDNKCYLEINYTFGIRKEW 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443560|ref|XP_004139545.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] gi|449508966|ref|XP_004163456.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  320 bits (819), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 162/254 (63%), Positives = 197/254 (77%), Gaps = 16/254 (6%)

Query: 1   MSLAVGALSSSNNMV---DEKRDEGENSNVAVGAAEPANLQEEQRTSRYV---------- 47
           MS+AV   SSS  ++   DEK  +G+  + +    E    ++E++    V          
Sbjct: 1   MSVAVEIGSSSKGIIMGFDEKDKDGKQEDSSPKLLERKKGEDEEQEVDVVPSSGMTRKMS 60

Query: 48  --TVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETL 105
             ++  T+EEDD+D  + I+LGPQYTLKE  EKDKDDESLR+WKEQLLG VDF+++GETL
Sbjct: 61  ESSICATEEEDDEDGRK-IELGPQYTLKELNEKDKDDESLRRWKEQLLGDVDFESVGETL 119

Query: 106 EPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKY 165
           EP+V+ILSL+I + GR DIVL VPE G P G WFTLKEGS+YSLKFTF+VSNNIVSGLKY
Sbjct: 120 EPDVKILSLAIKSSGRPDIVLPVPESGNPKGLWFTLKEGSRYSLKFTFQVSNNIVSGLKY 179

Query: 166 TNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKC 225
           TNTVWK G+KVDS K+M+GTFSPQPEPY HEM EETTPSG+FARGSYSAR+KF+DDDNKC
Sbjct: 180 TNTVWKTGVKVDSTKEMIGTFSPQPEPYDHEMQEETTPSGIFARGSYSARSKFVDDDNKC 239

Query: 226 YLEINYSFDIRKEW 239
           YLEINY+FDIRK+W
Sbjct: 240 YLEINYTFDIRKDW 253

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137328|ref|XP_002322530.1| predicted protein [Populus trichocarpa] gi|222867160|gb|EEF04291.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 164/252 (65%), Positives = 199/252 (78%), Gaps = 13/252 (5%)

Query: 1   MSLAVGALSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQ-------RTSRYVTVSE-- 51
           MSL  G  S++ +M  +++++ E S  A     P N +E           SR ++ S   
Sbjct: 1   MSLEAGVNSNTKSMGFDEKNKEEVSETAATTKTPPNEEENNVDEPKSGGISRKMSESSLY 60

Query: 52  -TDEEDDDD---REQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEP 107
            TD+E++DD    E+ I+LGPQ TLKEQ+EKDKDDESLR+WKEQLLG+VD +  GETLEP
Sbjct: 61  GTDQEEEDDEETNERKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGAVDIEAAGETLEP 120

Query: 108 EVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
           EV+ILSL I + GR DIVL+VPE+GKP G+WFTLKEGS+YSL+FTFEV NNIVSGLKYTN
Sbjct: 121 EVKILSLEIKSSGRPDIVLSVPENGKPKGSWFTLKEGSRYSLQFTFEVKNNIVSGLKYTN 180

Query: 168 TVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYL 227
           TVWK GIKVDS+K+M+GTFSPQ EPY HEMPEETTPSGMFARGSY+AR+KF+DDDNKCYL
Sbjct: 181 TVWKTGIKVDSSKEMIGTFSPQTEPYTHEMPEETTPSGMFARGSYAARSKFVDDDNKCYL 240

Query: 228 EINYSFDIRKEW 239
           EINY+FDIRK+W
Sbjct: 241 EINYTFDIRKDW 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2077462	240	SCN1 "SUPERCENTIPEDE1" [Arabid	0.975	0.983	0.666	3.2e-81
TAIR|locus:2027154	223	AT1G62450 [Arabidopsis thalian	0.727	0.789	0.707	4.4e-68
TAIR|locus:2008965	223	AT1G12070 [Arabidopsis thalian	0.727	0.789	0.696	4.5e-66
ASPGD|ASPL0000061086	197	AN0163 [Emericella nidulans (t	0.719	0.883	0.406	6.9e-31
RGD|1305383	200	Arhgdib "Rho, GDP dissociation	0.694	0.84	0.420	2.7e-29
FB|FBgn0036921	201	RhoGDI "RhoGDI" [Drosophila me	0.727	0.875	0.379	3.4e-29
MGI|MGI:101940	200	Arhgdib "Rho, GDP dissociation	0.694	0.84	0.409	1.2e-28
UNIPROTKB|F1P3P3	204	ARHGDIA "Uncharacterized prote	0.690	0.818	0.411	1.5e-28
UNIPROTKB|E2RAL0	200	ARHGDIB "Uncharacterized prote	0.694	0.84	0.414	1.5e-28
UNIPROTKB|Q9TU03	200	ARHGDIB "Rho GDP-dissociation	0.694	0.84	0.409	1.9e-28

TAIR|locus:2077462 SCN1 "SUPERCENTIPEDE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 164/246 (66%), Positives = 186/246 (75%)

Query:     1 MSLAVGA----LSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSXXXXXX 56
             MSL  GA       +NN  + K  + ENS+    A + A  ++   +S   T        
Sbjct:     1 MSLVSGARDMGFDDNNNNKNNKDGDDENSSSRTRADDDALSRQMSESSLCATEEEEDDDS 60

Query:    57 XXXXXXXIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSI 116
                    +QLGPQYT+KE +EKDKDDESLRKWKEQLLGSVD  NIGETL+PEVRI SL+I
Sbjct:    61 K------LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVRIDSLAI 114

Query:   117 VAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKV 176
             ++PGR DIVL VPE+G P G WFTLKEGSKY+LKFTF V+NNIVSGL+YTNTVWK G+KV
Sbjct:   115 ISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKV 174

Query:   177 DSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR 236
             D AK+MLGTFSPQ EPY H MPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR
Sbjct:   175 DRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR 234

Query:   237 KEWAAV 242
             KEW A+
Sbjct:   235 KEWPAL 240

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009932 "cell tip growth" evidence=IMP

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2027154 AT1G62450 [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 126/178 (70%), Positives = 148/178 (83%)

Query:    64 IQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND 123
             ++LGP   LKEQ+E+DKDDESLR+WKEQLLG VD +++GET +P V+IL L+I +P R +
Sbjct:    45 LELGPMIALKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKILDLTIRSPDREE 104

Query:   124 IVLAVPEDG--KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQ 181
             +VL +PEDG   P G WFT+KEGSKY+L F F V+NNIVSGL+Y NTVWK G+KVDS K 
Sbjct:   105 MVLTIPEDGLPNPKGPWFTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVKVDSTKA 164

Query:   182 MLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
             MLGTFSPQ E Y H MPEE TPSGMFARGSYSARTKF+DDDNKCYLEINY+FDIRK W
Sbjct:   165 MLGTFSPQAESYQHVMPEEMTPSGMFARGSYSARTKFIDDDNKCYLEINYTFDIRKSW 222

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2008965 AT1G12070 [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 124/178 (69%), Positives = 149/178 (83%)

Query:    64 IQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND 123
             ++LGP   LKEQ+EKDKDDESLR+WKEQLLGSVD + +GET +P V+IL+L+I +P R D
Sbjct:    45 LELGPMIALKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKILTLTIRSPDRED 104

Query:   124 IVLAVPEDGKPA--GNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQ 181
             +VL +PE+GKPA  G WFTLKEGSKY+L FTF V+NNIVSGL+Y+NTVWK GIKV S K+
Sbjct:   105 MVLTIPENGKPASKGPWFTLKEGSKYTLIFTFRVTNNIVSGLQYSNTVWKTGIKVYSRKE 164

Query:   182 MLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
             MLGTFSPQ EPY H M EET PSG+  RGSYS ++KF+DDDN+CYLE NY+FDIRK W
Sbjct:   165 MLGTFSPQAEPYTHVMFEETAPSGLLVRGSYSVKSKFVDDDNQCYLENNYTFDIRKNW 222

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

ASPGD|ASPL0000061086 AN0163 [Emericella nidulans (taxid:162425)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 74/182 (40%), Positives = 114/182 (62%)

Query:    65 QLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRIL-SLSIVAPGRND 123
             ++G + T+ E  E DK+DESL +WK  L G    +  G+  +P   I+ +L++   GR D
Sbjct:    17 KVGEKKTIAEYNELDKNDESLNRWKASL-GLNTGEPTGDPNDPRTCIIKTLALEVQGRPD 75

Query:   124 IVLAVPEDG---KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAK 180
             +V+ V   G   K     FT+KEG+ + +K TFEV ++++SGLKY   V + GI+V   +
Sbjct:    76 VVIDVSAPGALEKLKDKPFTIKEGAHFRIKVTFEVHHDVLSGLKYLQVVKRKGIRVSKDQ 135

Query:   181 QMLGTFSP--QPEP-YIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRK 237
             +MLG+++P    +P Y  +  EE  PSGM ARG Y+A +KF+DDD+K +L  ++SFDI K
Sbjct:   136 EMLGSYAPCTTGKPIYEKKFQEEEAPSGMMARGHYNAESKFIDDDDKVHLHFHWSFDIAK 195

Query:   238 EW 239
             +W
Sbjct:   196 DW 197

GO:0007015 "actin filament organization" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0032889 "regulation of vacuole fusion, non-autophagic" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

RGD|1305383 Arhgdib "Rho, GDP dissociation inhibitor (GDI) beta" [Rattus norvegicus (taxid:10116)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 74/176 (42%), Positives = 105/176 (59%)

Query:    68 PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
             PQ +LKE  E DKDDESL K+K+ LLG V    + +   P V +  LS+V   APG   I
Sbjct:    27 PQKSLKELQEMDKDDESLTKYKKTLLGDVPV--VADPTVPNVTVTRLSLVCDSAPG--PI 82

Query:   125 VLAVPEDGKPAG-NWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQML 183
              + +  D K    + F LKEG +Y +K  F+V+ +IVSGLKY    ++ G+KVD A  M+
Sbjct:    83 TMDLTGDLKALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQQTYRNGMKVDKATFMV 142

Query:   184 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
             G++ P+PE Y    P E  P GM ARG+Y  ++ F DDD + +L   ++  I+K+W
Sbjct:   143 GSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAIKKDW 198

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0036921 RhoGDI "RhoGDI" [Drosophila melanogaster (taxid:7227)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 68/179 (37%), Positives = 108/179 (60%)

Query:    65 QLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNI-GETLEP-EVRILSLSIVAPGRN 122
             Q  P+ T++E +  D++DESLR++KE LLG+   + I  E  +P +V +  L++V  GR+
Sbjct:    23 QAPPEKTIEEIMAADQEDESLRRYKEALLGAAQTEKIIVEPNDPRKVIVKKLALVVEGRD 82

Query:   123 DIVLAVPED-GKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQ 181
             D+ L +  D  +     F +KEG +Y ++  F V   IV GLKY     + G+ VD  K 
Sbjct:    83 DMELDLTGDLSQLKKQLFVIKEGVQYKVRIDFIVQREIVHGLKYVQKTSRLGVNVDKMKH 142

Query:   182 MLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 240
             M+G++ P+ E   +  P E  PSG F+RG+YS  + F DDD   +LE +++F+I+K+WA
Sbjct:   143 MVGSYPPKKEIQFYLTPAEEAPSGTFSRGTYSVSSVFTDDDKHIHLEWDWTFEIKKDWA 201

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:101940 Arhgdib "Rho, GDP dissociation inhibitor (GDI) beta" [Mus musculus (taxid:10090)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 72/176 (40%), Positives = 105/176 (59%)

Query:    68 PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
             PQ +LKE  E DKDDESL K+K+ LLG V    + +   P V +  LS+V   APG   I
Sbjct:    27 PQKSLKELQEMDKDDESLTKYKKTLLGDVPV--VADPTVPNVTVTRLSLVCDSAPG--PI 82

Query:   125 VLAVPEDGKPAG-NWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQML 183
              + +  D +    + F LKEG +Y +K  F+V+ +IVSGLKY    ++ G++VD A  M+
Sbjct:    83 TMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQHTYRTGMRVDKATFMV 142

Query:   184 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
             G++ P+PE Y    P E  P GM ARG+Y  ++ F DDD + +L   ++  I+K+W
Sbjct:   143 GSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAIKKDW 198

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1P3P3 ARHGDIA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 72/175 (41%), Positives = 103/175 (58%)

Query:    69 QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
             Q +++E  E DKDDESLRK+KE LLG+V      +   P V +  L++V   APG  ++ 
Sbjct:    32 QKSIQEIQELDKDDESLRKYKEALLGAVTVT--ADPNAPNVVVTKLTLVCTTAPGPLELD 89

Query:   126 LAVP-EDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLG 184
             L    E  K     F LKEG +Y +K +F V+  IVSGLKY    ++ G+K+D  + M+G
Sbjct:    90 LTGDLESYKKQA--FVLKEGVEYRIKISFRVNREIVSGLKYIQHTFRKGVKIDKTEYMVG 147

Query:   185 TFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
             ++ P+ E Y    P E  P GM ARGSY+ ++KF DDD   +L   ++  I+KEW
Sbjct:   148 SYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSKFTDDDKTDHLSWEWNLTIKKEW 202

GO:0005737 "cytoplasm" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

UNIPROTKB|E2RAL0 ARHGDIB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 73/176 (41%), Positives = 103/176 (58%)

Query:    68 PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
             PQ +LKE  E DKDDESL K+K+ LLG  D   + +   P V +  L++V   APG   I
Sbjct:    27 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVADPTAPNVTVTRLTLVCESAPG--PI 82

Query:   125 VLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQML 183
              + +  D +      F LKEG +Y +K  F+V+ +IVSGLKY    ++ G+KVD A  M+
Sbjct:    83 TMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMV 142

Query:   184 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
             G++ P+PE Y    P E  P GM ARG+Y  ++ F DDD   +L   ++  I+KEW
Sbjct:   143 GSYGPRPEEYEFLTPAEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKEW 198

GO:0005737 "cytoplasm" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

UNIPROTKB|Q9TU03 ARHGDIB "Rho GDP-dissociation inhibitor 2" [Bos taurus (taxid:9913)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 72/176 (40%), Positives = 103/176 (58%)

Query:    68 PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
             PQ +LKE  E DKDDESL K+K+ LLG  D   + +   P V +  L++V   APG   I
Sbjct:    27 PQKSLKELQEMDKDDESLTKYKKTLLG--DGPVVADPTAPNVTVTRLTLVCESAPG--PI 82

Query:   125 VLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQML 183
              + +  D +      F LKEG +Y +K  F+V+ +IVSGLKY    ++ G+KVD A  M+
Sbjct:    83 TMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDIVSGLKYVQHTYRTGVKVDKATFMV 142

Query:   184 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
             G++ P+PE Y    P E  P GM ARG+Y  ++ F DDD   +L   ++  I+K+W
Sbjct:   143 GSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDW 198

GO:0005737 "cytoplasm" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SFC6	GDIR_ARATH	No assigned EC number	0.7948	0.7975	0.8041	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
pfam02115	200	pfam02115, Rho_GDI, RHO protein GDP dissociation i	9e-78

>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor

 Score =  232 bits (594), Expect = 9e-78
 Identities = 80/186 (43%), Positives = 119/186 (63%), Gaps = 3/186 (1%)

Query: 54  EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
           E+++D+   + +  PQ +LKE  E DK+DESLRK+KE+LLG V    + +  EP V + S
Sbjct: 17  EDEEDEDSVNYKPPPQKSLKEIQELDKEDESLRKYKEKLLGPVP--VLVDPKEPNVVVTS 74

Query: 114 LSIVAPGRNDIVLAVPED-GKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKA 172
           L++++ G   I L +  D  +     F LKEGS+Y LK +F+V   IVSGLKY    ++A
Sbjct: 75  LTLLSEGAPPIELDLTGDLKQLKSQLFVLKEGSEYRLKISFKVQREIVSGLKYVQHTYRA 134

Query: 173 GIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYS 232
           G++VD  K M+G++ P+ E Y +  PEE  PSG  ARGSYSA++KF DDD   +L   ++
Sbjct: 135 GLRVDKTKYMVGSYGPRAEEYEYLTPEEEAPSGALARGSYSAKSKFTDDDKTDHLSWEWN 194

Query: 233 FDIRKE 238
            +I+K+
Sbjct: 195 LEIKKD 200

Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
KOG3205	200	consensus Rho GDP-dissociation inhibitor [Signal t	100.0
PF02115	200	Rho_GDI: RHO protein GDP dissociation inhibitor; I	100.0
PF02221	134	E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The	95.9
cd00917	122	PG-PI_TP The phosphatidylinositol/phosphatidylglyc	92.58
smart00737	118	ML Domain involved in innate immunity and lipid me	89.66
cd00258	162	GM2-AP GM2 activator protein (GM2-AP) is a non-enz	85.66
PF11797	140	DUF3324: Protein of unknown function C-terminal (D	84.93

>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-82  Score=547.66  Aligned_cols=185  Identities=56%  Similarity=0.956  Sum_probs=175.9

Q ss_pred             ccccccccCCccCCcccCHHHHHhcCCCchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCCCeEEeCCCCCC
Q 026190           54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGK  133 (242)
Q Consensus        54 ~e~~~~~~~~y~~g~~ksl~E~~~lD~eDESL~kwKesLlG~~~~~~~~~~~~p~V~I~~l~l~~egr~di~ldL~~~~~  133 (242)
                      ++++++.+..|++||||||+||+++|+|||||||||++|||.++  .++++++|+|+|.+|+|+|+||||++|+|++++.
T Consensus        14 ~~~e~~~d~~yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~--~~~~~~dp~VvV~~LtLl~~~r~pi~ldlt~~~~   91 (200)
T KOG3205|consen   14 EEDEEDEDENYKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD--VIVDPNDPRVVVLKLTLLSEGRPPIVLDLTGDLS   91 (200)
T ss_pred             cccccccccccCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC--cccCCCCCeEEEEEEEEEeCCCCCeEEeCCCCcc
Confidence            33444444599999999999999999999999999999999987  5779999999999999999999999999998885


Q ss_pred             --CCCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeeeee
Q 026190          134 --PAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGS  211 (242)
Q Consensus       134 --~k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG~  211 (242)
                        +++.+|+|||||.|+|+|+|+|||+|||||||+|+|||.||+|||+..|||||+|++++|+|.+|+|||||||||||+
T Consensus        92 ~~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p~eeAPsGmlaRG~  171 (200)
T KOG3205|consen   92 PELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSYGPQAEPYEFVTPEEEAPSGMLARGS  171 (200)
T ss_pred             ccccCceEEeecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccCCCCCcceeeeCCcccCCccceeecc
Confidence              599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeEEEEeCCCceEEEEEEeEEeeccCC
Q 026190          212 YSARTKFLDDDNKCYLEINYSFDIRKEWA  240 (242)
Q Consensus       212 Y~akSkFvDDDk~~hL~~ewsfeI~KdW~  240 (242)
                      |+|+|+|+|||++|||+|+|+|+|+|+|.
T Consensus       172 Ys~~skF~DDDk~~hLe~~w~~~I~K~W~  200 (200)
T KOG3205|consen  172 YSAKSKFTDDDKTCHLEWNWTFDIKKEWK  200 (200)
T ss_pred             eeeeeEEecCCCceEEEEEEEEEEeeccC
Confidence            99999999999999999999999999995

>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them

Probab=100.00  E-value=1.3e-78  Score=529.95  Aligned_cols=186  Identities=51%  Similarity=0.835  Sum_probs=150.0

Q ss_pred             CCCccccccccCCccCCcccCHHHHHhcCCCchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCCCeEEeCCC
Q 026190           51 ETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPE  130 (242)
Q Consensus        51 ~~~~e~~~~~~~~y~~g~~ksl~E~~~lD~eDESL~kwKesLlG~~~~~~~~~~~~p~V~I~~l~l~~egr~di~ldL~~  130 (242)
                      ..+|+++++.+.+|++|++|||+||++||++|||||||||||||.++  .++++++|+|+|++|+|+|+|||||+|+|++
T Consensus        14 ~~~~~~~~~~~~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~--~~~d~~~p~V~v~~l~l~~eg~p~i~ldl~~   91 (200)
T PF02115_consen   14 EEEEDEEDEETPGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD--VIGDPNDPKVIVKSLTLVVEGRPPIVLDLTG   91 (200)
T ss_dssp             CTSSSSS---S----------HHHHHHTTTT-HHHHHHHHHHH-SS----SS-STS-SEEEEEEEEEETTSS-EEEETTS
T ss_pred             ccccccccccccccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc--ccCCCCCCeEEEEEEEEEcCCCCCeeeeccC
Confidence            34556666677889999999999999999999999999999999887  5778889999999999999999999999998


Q ss_pred             CC-CCCCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeee
Q 026190          131 DG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFAR  209 (242)
Q Consensus       131 ~~-~~k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLAR  209 (242)
                      +. .+++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||+++.|||||+|++++|+|+||+|+||||||||
T Consensus        92 ~~~~~k~~~f~IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG~laR  171 (200)
T PF02115_consen   92 DLEDLKKKPFTIKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSGMLAR  171 (200)
T ss_dssp             -GGGGGGSEEEEETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BSTTT-
T ss_pred             ccccccCCcEEccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceeeeccCCCCcceEEeCcCccCCCceeEe
Confidence            86 47899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeEEEEeCCCceEEEEEEeEEeecc
Q 026190          210 GSYSARTKFLDDDNKCYLEINYSFDIRKE  238 (242)
Q Consensus       210 G~Y~akSkFvDDDk~~hL~~ewsfeI~Kd  238 (242)
                      |+|+|+|+|+|||+++||+|+|+|+|+|+
T Consensus       172 G~Y~aks~f~DdD~~~~l~~~w~feI~Kd  200 (200)
T PF02115_consen  172 GSYTAKSKFVDDDKNVHLEWEWSFEIKKD  200 (200)
T ss_dssp             EEEEEEEEEEETTSSECEEEEEEEEEESS
T ss_pred             eeeeEEEEEEeCCCcEEEEEEEEEEEecC
Confidence            99999999999999999999999999996

The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....

>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products

Probab=95.90  E-value=0.16  Score=40.09  Aligned_cols=93  Identities=22%  Similarity=0.332  Sum_probs=64.5

Q ss_pred             eEEeccCCeEEEEEEEEEeceeeecceeEEEEEecc-eEeccc----c-cceec---cC---CCC-C---CeeecCC-CC
Q 026190          138 WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAG-IKVDSA----K-QMLGT---FS---PQP-E---PYIHEMP-EE  200 (242)
Q Consensus       138 ~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~G-I~Vdk~----e-~miGS---Y~---P~~-e---~Y~~~fp-~E  200 (242)
                      +-.++-|..++|++.|.+.++..++++-.-.++-.| ++|--.    . .....   ..   |-. .   .|++.++ +.
T Consensus        25 pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~~~~~~~~~i~~  104 (134)
T PF02221_consen   25 PCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEYYTYTYTIPIPK  104 (134)
T ss_dssp             SEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEEEEEEEEEEEST
T ss_pred             CCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcccccccCccCCCcEEEEEEEEEccc
Confidence            366889999999999999999999999877778887 877554    2 23221   11   222 1   2344443 34


Q ss_pred             CCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEe
Q 026190          201 TTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDI  235 (242)
Q Consensus       201 eAPSGmLARG~Y~akSkFvDDDk~~hL~~ewsfeI  235 (242)
                      ..|.     |+|+++.+++|+++...+=++..++|
T Consensus       105 ~~p~-----~~~~i~~~l~d~~~~~i~C~~~~v~I  134 (134)
T PF02221_consen  105 IYPP-----GKYTIQWKLTDQDGEEIACFEFPVKI  134 (134)
T ss_dssp             TSSS-----EEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             ceee-----EEEEEEEEEEeCCCCEEEEEEEEeEC
Confidence            4444     59999999999998777666665554

It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....

>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure

Probab=92.58  E-value=1.5  Score=35.17  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=55.9

Q ss_pred             eccCCeEEEEEEEEEeceeeecceeEEEEEecceEeccccc-c---e---eccCCCC-CC--eeecCCCCCCCceeeeee
Q 026190          141 LKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQ-M---L---GTFSPQP-EP--YIHEMPEETTPSGMFARG  210 (242)
Q Consensus       141 IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~-m---i---GSY~P~~-e~--Y~~~fp~EeAPSGmLARG  210 (242)
                      ++.|...+|.+.|....++-+|++-.=.++-.||++-.... .   +   |--=|=. -.  |.++   -+-| +++-.|
T Consensus        24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~~G~~~~~~~---~~ip-~~~P~g   99 (122)
T cd00917          24 PAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIEPGDKFLTKL---VDLP-GEIPPG   99 (122)
T ss_pred             cCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcCCCcEEEEEE---eeCC-CCCCCc
Confidence            77889999999999998888887776688888988764433 1   1   2111221 12  3332   2344 455568


Q ss_pred             eeeeeEEEEeCCCceEE
Q 026190          211 SYSARTKFLDDDNKCYL  227 (242)
Q Consensus       211 ~Y~akSkFvDDDk~~hL  227 (242)
                      +|+++.++.|+|+....
T Consensus       100 ~y~v~~~l~d~~~~~i~  116 (122)
T cd00917         100 KYTVSARAYTKDDEEIT  116 (122)
T ss_pred             eEEEEEEEECCCCCEEE
Confidence            99999999998776553

These proteins belong to the ML domain family.

>smart00737 ML Domain involved in innate immunity and lipid metabolism

Probab=89.66  E-value=3.9  Score=31.94  Aligned_cols=80  Identities=23%  Similarity=0.494  Sum_probs=49.6

Q ss_pred             ccCCeEEEEEEEEEeceeeecceeEEEEEe-cc--eEeccccc-c---eeccCCCC--CC--eeecCCCCCCCceeeeee
Q 026190          142 KEGSKYSLKFTFEVSNNIVSGLKYTNTVWK-AG--IKVDSAKQ-M---LGTFSPQP--EP--YIHEMPEETTPSGMFARG  210 (242)
Q Consensus       142 KEGs~Y~lki~FkVq~eIVsGLkY~q~VkK-~G--I~Vdk~e~-m---iGSY~P~~--e~--Y~~~fp~EeAPSGmLARG  210 (242)
                      +-|...+|.+.|...+++-+ |+ +.+..+ .|  |++-.... .   +|..=|-.  +.  |+..++   .|+ .+-+|
T Consensus        22 ~~g~~~~i~i~f~~~~~~~~-~~-~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G~~~~~~~~~~---v~~-~~P~~   95 (118)
T smart00737       22 VRGKTLTISISFTLNEDISK-LK-VVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKGETVNYTNSLT---VPG-IFPPG   95 (118)
T ss_pred             CCCCEEEEEEEEEEcccceE-EE-EEEEEEECCEEEeccCCCCCccccCCCCCCCCCCeeEEEEEeeE---ccc-cCCCe
Confidence            78899999999999877655 54 444444 44  55543222 1   23333433  23  333332   232 55578


Q ss_pred             eeeeeEEEEeCCCceEE
Q 026190          211 SYSARTKFLDDDNKCYL  227 (242)
Q Consensus       211 ~Y~akSkFvDDDk~~hL  227 (242)
                      +|+++..++|+|+....
T Consensus        96 ~~~v~~~l~d~~~~~i~  112 (118)
T smart00737       96 KYTVKWELTDEDGEELA  112 (118)
T ss_pred             EEEEEEEEEcCCCCEEE
Confidence            99999999998877643

ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.

>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides

Probab=85.66  E-value=11  Score=32.80  Aligned_cols=39  Identities=21%  Similarity=0.350  Sum_probs=28.2

Q ss_pred             cCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190          196 EMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR  236 (242)
Q Consensus       196 ~fp~EeAPSGmLARG~Y~akSkFvDDDk~~hL~~ewsfeI~  236 (242)
                      ..|.=+-|+ +|.+|+|.++... +.+++..-=.+-+|.++
T Consensus       122 ~lP~~~LPs-~l~~G~Y~i~~~l-~~~g~~l~C~~~~~sL~  160 (162)
T cd00258         122 TLPNVDLPS-WLTNGNYRITGIL-MADGKELGCGKFTFSLE  160 (162)
T ss_pred             ecccccCCC-ccCCCcEEEEEEE-CCCCCEEEEEEEEEEEe
Confidence            445445674 9999999999966 77777665566666664

GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.

>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function

Probab=84.93  E-value=10  Score=31.33  Aligned_cols=84  Identities=15%  Similarity=0.203  Sum_probs=56.4

Q ss_pred             EEEEEEEEec---eeeecceeEEEEEecce--EecccccceeccCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCC
Q 026190          148 SLKFTFEVSN---NIVSGLKYTNTVWKAGI--KVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDD  222 (242)
Q Consensus       148 ~lki~FkVq~---eIVsGLkY~q~VkK~GI--~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDD  222 (242)
                      +-.|..+++|   .+++.|+..-.|+++|=  .+-+.+..-.+.||++. +.|..++..-   -|.=|+|+++.+...++
T Consensus        43 ~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~-f~~~i~~~~~---~lk~G~Y~l~~~~~~~~  118 (140)
T PF11797_consen   43 RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSN-FNFPIPLGGK---KLKPGKYTLKITAKSGK  118 (140)
T ss_pred             eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCe-EEeEecCCCc---CccCCEEEEEEEEEcCC
Confidence            3444455544   47889999989988883  55666666678999876 4444555321   46669999999999988


Q ss_pred             CceEEEEEEeEEeec
Q 026190          223 NKCYLEINYSFDIRK  237 (242)
Q Consensus       223 k~~hL~~ewsfeI~K  237 (242)
                      ++-  .|+=.|.|+.
T Consensus       119 ~~W--~f~k~F~It~  131 (140)
T PF11797_consen  119 KTW--TFTKDFTITA  131 (140)
T ss_pred             cEE--EEEEEEEECH
Confidence            822  3333677754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	242
1ds6_B	180	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-28
1fst_A	182	Crystal Structure Of Truncated Human Rhogdi Triple		9e-28
1doa_B	219	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-27
4f38_B	204	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-27
1cc0_E	204	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-27
1fso_A	139	Crystal Structure Of Truncated Human Rhogdi Quadrup		1e-21
2jhw_A	138	Crystal Structure Of Rhogdi E155a, E157a Mutant Len		4e-21
1qvy_A	139	Crystal Structure Of Rhogdi K(199,200)r Double Muta		5e-21
1ft3_A	139	Crystal Structure Of Truncated Rhogdi K141a Mutant		6e-21
2jhz_A	138	Crystal Structure Of Rhogdi E155s, E157s Mutant Len		6e-21
2jhx_A	138	Crystal Structure Of Rhogdi E155h, E157h Mutant Len		7e-21
1ajw_A	145	Structure Of Rhogdi: A C-Terminal Binding Domain Ta		8e-21
2jht_A	138	Crystal Structure Of Rhogdi K135t,K138t,K141t Mutan		2e-20
2jhs_A	138	Crystal Structure Of Rhogdi K135h,K138h,K141h Mutan		3e-20
1kmt_A	141	Crystal Structure Of Rhogdi Glu(154,155)ala Mutant		3e-20
2jhu_A	138	Crystal Structure Of Rhogdi E154a,E155a Mutant Leng		3e-20
1ft0_A	139	Crystal Structure Of Truncated Human Rhogdi K113a M		4e-20
2ji0_A	138	Crystal Structure Of Rhogdi K138y, K141y Mutant Len		8e-20
2bxw_A	141	Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mut		1e-19
1rho_A	145	Structure Of Rho Guanine Nucleotide Dissociation In		1e-18

>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex Length = 180

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 8/177 (4%)
Query: 68  PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
           PQ +LKE  E DKDDESL K+K+ LLG  D   + +   P V +  L++V   APG   I
Sbjct: 7   PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPG--PI 62
Query: 125 VLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQML 183
            + +  D +        LKEGS+Y +K  F+V+ +IVSGLKY    ++ G+KVD A  M+
Sbjct: 63  TMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMV 122
Query: 184 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 240
           G++ P+PE Y    P E  P GM ARG+Y  ++ F DDD + +L   ++  I+KEW 
Sbjct: 123 GSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWG 179

>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant Length = 182

Iteration: 1
 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 6/174 (3%)
Query: 69  QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
           Q +++E  E DKDDESLRK+KE LLG V      +   P V +  L++V   APG  ++ 
Sbjct: 10  QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTGLTLVCSSAPGPLELD 67
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGT 185
           L    +     + F LKEG +Y +K +F V+  IVSG+KY    ++AG+ +D+   M+G+
Sbjct: 68  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGS 126
Query: 186 FSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
           + P+ E Y    P E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 127 YGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 180

>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 219

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 69  QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
           Q +++E  E DKDDESLRK+KE LLG V      +   P V +  L++V   APG  ++ 
Sbjct: 47  QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTRLTLVCSTAPGPLELD 104
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGT 185
           L    +     + F LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D    M+G+
Sbjct: 105 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 163
Query: 186 FSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
           + P+ E Y    P E  P GM ARGSY+ +++F DDD   +L   ++  I+KEW
Sbjct: 164 YGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 217

>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 204

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 69  QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
           Q +++E  E DKDDESLRK+KE LLG V      +   P V +  L++V   APG  ++ 
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTRLTLVCSTAPGPLELD 89
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGT 185
           L    +     + F LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D    M+G+
Sbjct: 90  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 148
Query: 186 FSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
           + P+ E Y    P E  P GM ARGSY+ +++F DDD   +L   ++  I+KEW
Sbjct: 149 YGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 202

>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 204

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 69  QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
           Q +++E  E DKDDESLRK+KE LLG V      +   P V +  L++V   APG  ++ 
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTGLTLVCSSAPGPLELD 89
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGT 185
           L    +     + F LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D    M+G+
Sbjct: 90  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 148
Query: 186 FSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
           + P+ E Y    P E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 149 YGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 202

>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple Mutant Length = 139

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++AG+ +D+   M+G++ P+ E Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGSYGPRAEEYEFLTP 96
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++F I+K+W
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNFTIKKDW 137

>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant Length = 138

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D    M+G++ P+ E Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEAYAFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant Length = 139

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D    M+G++ P+ E Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  IR++W
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIRRDW 137

>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant Length = 139

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 64/101 (63%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D+   M+G++ P+ E Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDATDYMVGSYGPRAEEYEFLTP 96
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 137

>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant Length = 138

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D    M+G++ P+ E Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAESYSFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant Length = 138

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D    M+G++ P+ E Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEHYHFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20 Structures Length = 145

Iteration: 1
 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D    M+G++ P+ E Y    P
Sbjct: 43  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 102
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSY+ +++F DDD   +L   ++  I+KEW
Sbjct: 103 MEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 143

>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant Length = 138

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+ +D+   M+G++ P+ E Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRTGVTIDTTDYMVGSYGPRAEEYEFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant Length = 138

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+ +D    M+G++ P+ E Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRHGVHIDHTDYMVGSYGPRAEEYEFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant Length = 141

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D    M+G++ P+   Y    P
Sbjct: 39  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 98
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 99  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 139

>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant Length = 138

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D    M+G++ P+   Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant Length = 139

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +  +F V+  IVSG+KY    ++ G+K+D    M+G++ P+ E Y    P
Sbjct: 37  FVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 137

>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant Length = 138

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+ +D    M+G++ P+ E Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVYIDYTDYMVGSYGPRAEEYEFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant Length = 141

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+ +D    M+G++ P+ E Y    P
Sbjct: 39  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRYGVYIDYTDYMVGSYGPRAEEYEFLTP 98
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 99  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 139

>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor Length = 145

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 60/101 (59%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
           F LKEG +Y +K +F V+  IVSG KY    ++ G+K+D     +G++ P+ E Y    P
Sbjct: 44  FVLKEGVEYRIKISFRVNREIVSGXKYIEHTYRKGVKIDKTDYXVGSYGPRAEEYEFLTP 103
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
            E  P G  ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 104 VEEAPKGXLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	5e-72
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	1e-70
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	2e-59
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A Length = 180

 Score =  217 bits (553), Expect = 5e-72
 Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 4/178 (2%)

Query: 65  QLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND- 123
           +  PQ +LKE  E DKDDESL K+K+ LLG      + +   P V +  L++V       
Sbjct: 4   KPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGP 61

Query: 124 IVLAVPED-GKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQM 182
           I + +  D          LKEGS+Y +K  F+V+ +IVSGLKY    ++ G+KVD A  M
Sbjct: 62  ITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFM 121

Query: 183 LGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 240
           +G++ P+PE Y    P E  P GM ARG+Y  ++ F DDD + +L   ++  I+KEW 
Sbjct: 122 VGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWG 179

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E* Length = 219

 Score =  214 bits (547), Expect = 1e-70
 Identities = 70/220 (31%), Positives = 111/220 (50%), Gaps = 5/220 (2%)

Query: 22  GENSNVAVGAAEPANLQEEQRTSRYVTVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKD 81
           G       G      + E++ T+  +      E ++D+   + +   Q +++E  E DKD
Sbjct: 1   GSPGISGGGGGILGLMAEQEPTAEQLA-QIAAENEEDEHSVNYKPPAQKSIQEIQELDKD 59

Query: 82  DESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND--IVLAVPEDGKPAGNWF 139
           DESLRK+KE LLG V      +   P V +  L++V         +    +        F
Sbjct: 60  DESLRKYKEALLGRV--AVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSF 117

Query: 140 TLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPE 199
            LKEG +Y +K +F V+  IVSG+KY    ++ G+K+D    M+G++ P+ E Y    P 
Sbjct: 118 VLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPM 177

Query: 200 ETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
           E  P GM ARGSY+ +++F DDD   +L   ++  I+KEW
Sbjct: 178 EEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 217

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A Length = 141

 Score =  183 bits (466), Expect = 2e-59
 Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 105 LEPEVRILSLSIVAPGRND-IVLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSG 162
           + P V +  L++V       + L +  D +      F LKEG +Y +K +F V+  IVSG
Sbjct: 3   MVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSG 62

Query: 163 LKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDD 222
           +KY    ++ G+K+D    M+G++ P+   Y    P E  P GM ARGSYS +++F DDD
Sbjct: 63  MKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDD 122

Query: 223 NKCYLEINYSFDIRKEW 239
              +L   ++  I+K+W
Sbjct: 123 KTDHLSWEWNLTIKKDW 139

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 13/79 (16%)

Query: 31  AAEPANLQE--EQRTSRYVTVSETDEEDDDDREQDIQLGPQY------TLKEQIEKDKDD 82
             EP ++++  E++  R   + E D       ++  +   +          EQ+EK+K  
Sbjct: 81  TQEPESIRKWREEQRKR---LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK-- 135

Query: 83  ESLRKWKEQLLGSVDFDNI 101
            + R   +      D D I
Sbjct: 136 INNRIADKAFYQQPDADII 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	100.0
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	100.0
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	100.0
2ag4_A	164	GM2-AP, ganglioside GM2 activator; complex of sing	90.01
1xwv_A	129	DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8	85.41
3t5g_B	152	Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic	80.42

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*

Probab=100.00  E-value=4.5e-81  Score=549.86  Aligned_cols=187  Identities=36%  Similarity=0.637  Sum_probs=176.0

Q ss_pred             CccccccccCCccCCcccCHHHHHhcCCCchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCC-CeEEeCCCC
Q 026190           53 DEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRN-DIVLAVPED  131 (242)
Q Consensus        53 ~~e~~~~~~~~y~~g~~ksl~E~~~lD~eDESL~kwKesLlG~~~~~~~~~~~~p~V~I~~l~l~~egr~-di~ldL~~~  131 (242)
                      +||++++.+++|++|++|||+||++||+||||||||||||||.++  .+.++++|+|+|++|+|+++||| +|+|+|+++
T Consensus        31 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~~DESL~kwKesLlg~~~--~~~d~~~P~V~i~~l~l~~~grp~pi~ldl~~~  108 (219)
T 1doa_B           31 AENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA--VSADPNVPNVVVTRLTLVCSTAPGPLELDLTGD  108 (219)
T ss_dssp             SSSSSCCCSCCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHHCCCC--CCCCSSCCSBCCCEEEEECSSCSSCCEEECSSC
T ss_pred             ccccccccccCcccCCccCHHHHHhhCcchhHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEeCCCC
Confidence            445556677889999999999999999999999999999998776  46678889999999999999995 599999977


Q ss_pred             C-CCCCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeeee
Q 026190          132 G-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARG  210 (242)
Q Consensus       132 ~-~~k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG  210 (242)
                      . .+++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||
T Consensus       109 ~~~lk~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG  188 (219)
T 1doa_B          109 LESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARG  188 (219)
T ss_dssp             CGGGGGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCTTSCCS
T ss_pred             hhhhcCCCEEecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcceeeeccCCCCCcccccCCCccCCccceeee
Confidence            6 469999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeEEEEeCCCceEEEEEEeEEeeccCCC
Q 026190          211 SYSARTKFLDDDNKCYLEINYSFDIRKEWAA  241 (242)
Q Consensus       211 ~Y~akSkFvDDDk~~hL~~ewsfeI~KdW~~  241 (242)
                      +|+|+|+|+|||+++||+|+|+|+|+|||.+
T Consensus       189 ~Y~akSkF~DDD~~~hL~~eWsfeI~KdW~~  219 (219)
T 1doa_B          189 SYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD  219 (219)
T ss_dssp             EEEEEEEEECTTCCCCEEEEEEEEEESSTTC
T ss_pred             eeeeeEEEEeCCCceEEEEEEEEEEecCCCC
Confidence            9999999999999999999999999999974

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A

Probab=100.00  E-value=1.2e-80  Score=534.27  Aligned_cols=178  Identities=39%  Similarity=0.655  Sum_probs=170.4

Q ss_pred             CCccCCcccCHHHHHhcCCCchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCC-CCeEEeCCCCC-CCCCceE
Q 026190           62 QDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGR-NDIVLAVPEDG-KPAGNWF  139 (242)
Q Consensus        62 ~~y~~g~~ksl~E~~~lD~eDESL~kwKesLlG~~~~~~~~~~~~p~V~I~~l~l~~egr-~di~ldL~~~~-~~k~~~F  139 (242)
                      ++|++|++|||+||++||+||||||||||||||.++  +++++++|+|+|++|+|+++|| +||+++|+++. .+++.+|
T Consensus         1 ~~yk~~~~ksl~e~~~~D~~DESL~k~K~~Llg~~~--~~~~~~~p~v~i~~l~l~~~~~~~pi~~dl~~~~~~~k~~~f   78 (180)
T 1ds6_B            1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI   78 (180)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred             CCcCcCCccCHHHHHhhCcchHHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEECCCChhhccCCCE
Confidence            469999999999999999999999999999998876  5678888999999999999999 88999999875 4689999


Q ss_pred             EeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEE
Q 026190          140 TLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFL  219 (242)
Q Consensus       140 ~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFv  219 (242)
                      +|||||.|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||+|+|+|+|+
T Consensus        79 ~iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~skF~  158 (180)
T 1ds6_B           79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT  158 (180)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEE
T ss_pred             EecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceEEEEEEeEEeeccCCC
Q 026190          220 DDDNKCYLEINYSFDIRKEWAA  241 (242)
Q Consensus       220 DDDk~~hL~~ewsfeI~KdW~~  241 (242)
                      ||||++||+|+|+|+|+|+|.+
T Consensus       159 DDD~~~hl~~~wsfeI~KdW~~  180 (180)
T 1ds6_B          159 DDDKQDHLSWEWNLSIKKEWGE  180 (180)
T ss_dssp             CTTCCCCEEEEEEEEEESSCC-
T ss_pred             cCCCceEEEEEEEEEEeeCCCC
Confidence            9999999999999999999974

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A

Probab=100.00  E-value=2.3e-63  Score=412.86  Aligned_cols=138  Identities=34%  Similarity=0.671  Sum_probs=131.1

Q ss_pred             CCCCeEEEEEEEEEeCCCC-CeEEeCCCCC-CCCCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEeccccc
Q 026190          104 TLEPEVRILSLSIVAPGRN-DIVLAVPEDG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQ  181 (242)
Q Consensus       104 ~~~p~V~I~~l~l~~egr~-di~ldL~~~~-~~k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~  181 (242)
                      +++|+|+|++|+|+++||| +|+++|+++. .+++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++
T Consensus         2 p~~p~v~i~~l~l~~~~~~~pi~~~l~~~~~~~k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~   81 (141)
T 1kmt_A            2 AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY   81 (141)
T ss_dssp             CBCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhccCceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcceE
Confidence            4568999999999999976 6999999875 4699999999999999999999999999999999999999999999999


Q ss_pred             ceeccCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEeeccCCC
Q 026190          182 MLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAA  241 (242)
Q Consensus       182 miGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDDk~~hL~~ewsfeI~KdW~~  241 (242)
                      |||||+|++++|+|+||+|||||||||||+|+|+|+|+|||+++||+|+|+|+|+|||.+
T Consensus        82 mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~F~DDD~~~hl~~~w~feI~KdW~~  141 (141)
T 1kmt_A           82 MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD  141 (141)
T ss_dssp             EEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEEEEESCC--
T ss_pred             eeeccCCCCCcceecCCCccCCceeEEeeeeeeeEEEEcCCCcEEEEEEEeEEEecCCCC
Confidence            999999999999999999999999999999999999999999999999999999999974

>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*

Probab=90.01  E-value=2.4  Score=34.83  Aligned_cols=40  Identities=18%  Similarity=0.295  Sum_probs=30.1

Q ss_pred             ecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190          195 HEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR  236 (242)
Q Consensus       195 ~~fp~EeAPSGmLARG~Y~akSkFvDDDk~~hL~~ewsfeI~  236 (242)
                      +.+|..+.|+ +|..|.|+++..+.| +++...=++-.|.|+
T Consensus       123 ~~lp~~~lP~-~l~~G~Y~v~~~~~~-~~~~l~Ci~~~~~l~  162 (164)
T 2ag4_A          123 FVVPDLELPS-WLTTGNYRIESVLSS-SGKRLGCIKIAASLK  162 (164)
T ss_dssp             EEECCCCCCT-TCSSEEEEEEEEEEE-TTEEEEEEEEEEEEE
T ss_pred             eecCcccccC-ccCCceEEEEEEEec-CCCEEEEEEEEEEEE
Confidence            5567778998 999999999999988 555554555566553

>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A

Probab=85.41  E-value=5.7  Score=31.10  Aligned_cols=95  Identities=15%  Similarity=0.205  Sum_probs=64.1

Q ss_pred             CceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEeccc--ccceeccC--CCC--CC--eeecCC-CCCCCcee
Q 026190          136 GNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSA--KQMLGTFS--PQP--EP--YIHEMP-EETTPSGM  206 (242)
Q Consensus       136 ~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~--e~miGSY~--P~~--e~--Y~~~fp-~EeAPSGm  206 (242)
                      ..|=.|+-|..++|.|.|.-+.+ ++.|+-.=.++=.|+++-=.  ..-.=++.  |=.  +.  |++.+| +...|.  
T Consensus        24 ~~pC~l~rG~~~~i~~~f~~~~~-~~~l~~~v~~~~~g~~ip~p~~~~daC~~~~CPl~~G~~~~y~~~~~v~~~~P~--  100 (129)
T 1xwv_A           24 SDPCIIHRGKPFTLEALFDANQN-TKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPK--  100 (129)
T ss_dssp             TSCEEEETTSEEEEEEEEECCSC-BSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBCTTCEEEEEEEEECCTTSCC--
T ss_pred             CCCCEEeCCCeEEEEEEEECCCc-cceEEEEEEEEEcCEEeecCCCCCCccCCccCcccCCEEEEEEEEeEecccCCC--
Confidence            45788999999999999998877 79999888888889887311  00000111  221  23  444565 334554  


Q ss_pred             eeeee-eeeeEEEEeCCCceEEEE-EEeEEeec
Q 026190          207 FARGS-YSARTKFLDDDNKCYLEI-NYSFDIRK  237 (242)
Q Consensus       207 LARG~-Y~akSkFvDDDk~~hL~~-ewsfeI~K  237 (242)
                         ++ |.++-..+||++ ...=| .-.++|++
T Consensus       101 ---v~~~~v~~~L~d~~~-~l~Cf~~~~~~I~~  129 (129)
T 1xwv_A          101 ---SENVVVTVKLVGDNG-VLACAIATHAKIRD  129 (129)
T ss_dssp             ---BSCEEEEEEEEETTE-EEEEEEECCEEEEC
T ss_pred             ---CceEEEEEEEEcCCC-cEEEEecccEEEeC
Confidence               57 999999999988 55556 66666654

>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*

Probab=80.42  E-value=3.6  Score=34.36  Aligned_cols=84  Identities=19%  Similarity=0.214  Sum_probs=63.9

Q ss_pred             eEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCC---eeecCCCC--CCCceeeeeeeeeeeEEEEe
Q 026190          146 KYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEP---YIHEMPEE--TTPSGMFARGSYSARTKFLD  220 (242)
Q Consensus       146 ~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~---Y~~~fp~E--eAPSGmLARG~Y~akSkFvD  220 (242)
                      .-.-+|.|.| .++|.++|-+|.++=+|-.+..-..-.|=-.|++..   ..+.+|++  --|. -..-|.-.+.++|+|
T Consensus        60 ~V~~~i~Fs~-~epi~nFRmierhyf~~~lle~~dF~FGF~IP~StNTWe~i~E~~~~~~mlpa-~~lsGnv~IeT~f~d  137 (152)
T 3t5g_B           60 AVSRELNFSS-TEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA-SVLTGNVIIETKFFD  137 (152)
T ss_dssp             EEEEEEEEEE-SSCEEEEEEEEEEEETTEEEEEEEEEEEEECTTEEEEEEEEEEBCCGGGSCCH-HHHTTTEEEEEEEEE
T ss_pred             hheEEEEEec-cccccccEEEEEEEEcCceeeeEeeeeeeEcCCCCcccceEEEcCCccccCCH-hHcCCcEEEEEEEec
Confidence            3455889999 799999999999999999998888888888898753   34555543  2232 233599999999999


Q ss_pred             CCCceEEEEEE
Q 026190          221 DDNKCYLEINY  231 (242)
Q Consensus       221 DDk~~hL~~ew  231 (242)
                      +|.-+.-+--+
T Consensus       138 ~d~li~~s~vR  148 (152)
T 3t5g_B          138 DDLLVSTSRVR  148 (152)
T ss_dssp             TTEEEEEEEEE
T ss_pred             CCEEEEEeEEE
Confidence            99877654433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d1ds6b_	179	b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, Rh	2e-83
d1kmta_	138	b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, Rh	1e-65

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 179

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  244 bits (625), Expect = 2e-83
 Identities = 70/176 (39%), Positives = 101/176 (57%), Gaps = 4/176 (2%)

Query: 67  GPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND-IV 125
            PQ +LKE  E DKDDESL K+K+ LLG  D   + +   P V +  L++V       I 
Sbjct: 6   PPQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPIT 63

Query: 126 LAVPEDGKPA-GNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLG 184
           + +  D +        LKEGS+Y +K  F+V+ +IVSGLKY    ++ G+KVD A  M+G
Sbjct: 64  MDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVG 123

Query: 185 TFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 240
           ++ P+PE Y    P E  P GM ARG+Y  ++ F DDD + +L   ++  I+KEW 
Sbjct: 124 SYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWG 179

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  198 bits (504), Expect = 1e-65
 Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 104 TLEPEVRILSLSIVAPGRND-IVLAVPED-GKPAGNWFTLKEGSKYSLKFTFEVSNNIVS 161
            + P V +  L++V       + L +  D        F LKEG +Y +K +F V+  IVS
Sbjct: 1   AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVS 60

Query: 162 GLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDD 221
           G+KY    ++ G+K+D    M+G++ P+   Y    P E  P GM ARGSYS +++F DD
Sbjct: 61  GMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDD 120

Query: 222 DNKCYLEINYSFDIRKEW 239
           D   +L   ++  I+K+W
Sbjct: 121 DKTDHLSWEWNLTIKKDW 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1ds6b_	179	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1kmta_	138	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1kshb_	149	GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}	85.66
d1nepa_	130	Epididymal secretory protein E1 (Niemann-Pick C2 p	83.99
d2ag4a1	163	Ganglioside M2 (gm2) activator {Human (Homo sapien	81.54

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-79  Score=524.65  Aligned_cols=177  Identities=39%  Similarity=0.657  Sum_probs=168.9

Q ss_pred             CCccCCcccCHHHHHhcCCCchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCC-CeEEeCCCCC-CCCCceE
Q 026190           62 QDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRN-DIVLAVPEDG-KPAGNWF  139 (242)
Q Consensus        62 ~~y~~g~~ksl~E~~~lD~eDESL~kwKesLlG~~~~~~~~~~~~p~V~I~~l~l~~egr~-di~ldL~~~~-~~k~~~F  139 (242)
                      .+|++|++|||+||++|||||||||||||||||.++  .++++++|+|+|++|+|+|+++| +|++||+++. .+++.+|
T Consensus         1 ~nyk~~~~ksl~E~~~~D~~DESL~kwKe~Llg~~~--~~~~~~~p~V~i~~l~l~~~~~p~~i~~dl~~~~~~lk~~~f   78 (179)
T d1ds6b_           1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI   78 (179)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred             CCcCCCCccCHHHHHhcCcChhHHHHHHHHhcCCCc--ccCCCCCCcEEEEEeEEEcCCCCCCeEecCCCccccccCCCE
Confidence            379999999999999999999999999999998665  46788899999999999999987 4999999775 4688999


Q ss_pred             EeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEE
Q 026190          140 TLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFL  219 (242)
Q Consensus       140 ~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFv  219 (242)
                      +|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++|||||+|++|+|+|+||+|||||||||||+|+|+|+|+
T Consensus        79 ~IKEGs~Y~i~i~F~V~~eivsGLkY~q~vkr~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~F~  158 (179)
T d1ds6b_          79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT  158 (179)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEE
T ss_pred             EecCCCEEEEEEEEEEecccccCcEEEEEEEECCEEEcceeEeeeccCCCCCceeEeCCCccCCceeEEeecceEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceEEEEEEeEEeeccCC
Q 026190          220 DDDNKCYLEINYSFDIRKEWA  240 (242)
Q Consensus       220 DDDk~~hL~~ewsfeI~KdW~  240 (242)
                      |||+++||+|+|+|+|+|||.
T Consensus       159 DDD~~~~l~~~w~feI~KdW~  179 (179)
T d1ds6b_         159 DDDKQDHLSWEWNLSIKKEWG  179 (179)
T ss_dssp             CTTCCCCEEEEEEEEEESSCC
T ss_pred             cCCCcEEEEEEEEEEEecCcC
Confidence            999999999999999999994

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-61  Score=398.72  Aligned_cols=134  Identities=35%  Similarity=0.684  Sum_probs=130.6

Q ss_pred             CCeEEEEEEEEEeCCCC-CeEEeCCCCC-CCCCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccce
Q 026190          106 EPEVRILSLSIVAPGRN-DIVLAVPEDG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQML  183 (242)
Q Consensus       106 ~p~V~I~~l~l~~egr~-di~ldL~~~~-~~k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~mi  183 (242)
                      .|+|+|++|+|+|+++| +|.|+|+++. ++++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++||
T Consensus         3 ~P~V~v~~l~l~~~~~P~~i~ldl~~~l~~lk~~~f~IKEGs~Y~i~i~F~V~~eivsGLky~q~v~r~Gi~Vdk~~~mv   82 (138)
T d1kmta_           3 VPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMV   82 (138)
T ss_dssp             CCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCceEEEEEEEEcCCCCCCEEEcCCCchhHhcCCCEEecCCCEEEEEEEEEEccccccCcEEEEEEEECCEEEcceeEee
Confidence            58999999999999997 5999999886 579999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEeeccC
Q 026190          184 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW  239 (242)
Q Consensus       184 GSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDDk~~hL~~ewsfeI~KdW  239 (242)
                      |||+|++++|+|+||+|||||||||||+|+|+|+|+|||+++||+|+|+|+|+|||
T Consensus        83 Gsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~f~Ddd~~~~l~~~w~feI~KdW  138 (138)
T d1kmta_          83 GSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW  138 (138)
T ss_dssp             EEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEEEEESCC
T ss_pred             eccCCCCCcEEEeCCCccCCceEEEeeeeeEEEEEEcCCCcEEEEEEEEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999

>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: GMP-PDE delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.66  E-value=0.47  Score=37.62  Aligned_cols=76  Identities=21%  Similarity=0.321  Sum_probs=58.6

Q ss_pred             EEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCC---eeecCCCC--CCCceeeeeeeeeeeEEEEeCC
Q 026190          148 SLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEP---YIHEMPEE--TTPSGMFARGSYSARTKFLDDD  222 (242)
Q Consensus       148 ~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~---Y~~~fp~E--eAPSGmLARG~Y~akSkFvDDD  222 (242)
                      .-+|.|.|. ++|.++|-+|.++=+|-.+..-..-.|=--|++..   ..|.+|++  ..|.-||+ |.-..-|.|.|||
T Consensus        59 ~~~i~Fs~~-e~i~~Frmierhyfr~~lle~~dFeFGF~IP~S~NTwe~iye~p~~~~~~~~~~l~-g~~~~dt~yf~~d  136 (149)
T d1kshb_          59 SRELNFSST-EQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLT-GNVIIETKFFDDD  136 (149)
T ss_dssp             EEEEEEEES-SCEEEEEEEEEEEETTEEEEEEEEEEEEECTTEEEEEEEEEC-------CCSTTTT-TSEEEEEEEEETT
T ss_pred             ceEEEEecC-cccccceEEEEEeecCceeeEEEeeeeeEecCCCcchhheeecCCccccchHHHhc-CCeEEEEEEEECC
Confidence            457889996 68999999999999999999999999988898752   45666644  78888888 6667788899887


Q ss_pred             Cce
Q 026190          223 NKC  225 (242)
Q Consensus       223 k~~  225 (242)
                      +-+
T Consensus       137 ~Li  139 (149)
T d1kshb_         137 LLV  139 (149)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.99  E-value=6.1  Score=28.91  Aligned_cols=95  Identities=19%  Similarity=0.268  Sum_probs=63.2

Q ss_pred             CceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEeccc-----ccceeccCCCC--CC--eeecCC-CCCCCce
Q 026190          136 GNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSA-----KQMLGTFSPQP--EP--YIHEMP-EETTPSG  205 (242)
Q Consensus       136 ~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~-----e~miGSY~P~~--e~--Y~~~fp-~EeAPSG  205 (242)
                      ..|=.|+.|...+|.|.|....++ .+|+-.=.++=.||++--.     .-.-|..=|=.  +.  |.+.+| +...|  
T Consensus        25 ~~PC~l~rG~~~~i~i~f~~~~~~-~~~~~~v~~~~~gi~ip~p~~~~d~C~~g~~CPl~~G~~~~y~~~~~I~~~~P--  101 (130)
T d1nepa_          25 TQPCKLHRGQSYSVNVTFTSNTQS-QSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYP--  101 (130)
T ss_dssp             SSSEEEETTCEEEEEEEEEESSCB-SCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEECCTTSC--
T ss_pred             CCCCEeeCCCEEEEEEEEEcCccc-ceEEEEEEEEECCEEecccCCCCcccccCCcCCccCCceEEEEEEEEcchhhc--
Confidence            345779999999999999998775 6788777778888876321     11123233332  23  455554 23444  


Q ss_pred             eeeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190          206 MFARGSYSARTKFLDDDNKCYLEINYSFDIR  236 (242)
Q Consensus       206 mLARG~Y~akSkFvDDDk~~hL~~ewsfeI~  236 (242)
                         +|+|+++-..+|++++...=|.-..+|+
T Consensus       102 ---~~~~~v~~~l~d~~~~~i~Cf~v~~~I~  129 (130)
T d1nepa_         102 ---SIKVVVEWELTDDKNQRFFCWQIPIEVE  129 (130)
T ss_dssp             ---SSEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             ---cEEEEEEEEEEcCCCCEEEEEEEeeEEE
Confidence               5789999999999987665555555553

>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.54  E-value=3.4  Score=32.25  Aligned_cols=37  Identities=19%  Similarity=0.345  Sum_probs=25.4

Q ss_pred             CCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190          198 PEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR  236 (242)
Q Consensus       198 p~EeAPSGmLARG~Y~akSkFvDDDk~~hL~~ewsfeI~  236 (242)
                      |.=+-|+ +|..|+|+++..+ +++++...=++-+|.|+
T Consensus       125 p~v~LP~-~l~~G~Y~v~~~~-~~~g~~l~Ci~~~~slk  161 (163)
T d2ag4a1         125 PDLELPS-WLTTGNYRIESVL-SSSGKRLGCIKIAASLK  161 (163)
T ss_dssp             CCCCCCT-TCSSEEEEEEEEE-EETTEEEEEEEEEEEEE
T ss_pred             ccccccC-ccCCceEEEEEEE-eCCCCEEEEEEEEEEEE
Confidence            3335677 8999999999997 44565554555566554