Citrus Sinensis ID: 026201

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MFDRSLTVSVNTLNYPSCTLGFVNSYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSFGSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEDC
Secondary Structure (PSIPRED)
cccccHHHHHHHccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccEEEEEEcHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEccccccccccccccEEEEEEEcccccEEccccccEEEEEcccccccccccccccccccccccHHHccccEEEEEccccHHHHHHHHHHHHHHccccccccEEEEccccccHHHccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccEEEEEEcHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mfdrsltvsvntlnypsctlgfvnSYRTLSrtrlnsnpllamppssvllqtdesgkfqeskksfgskaapfcsdALLNQANTVGIVGGASVDSTLNLLGKLVQlsgeendfpfllcsdpllnkellshdrssfsslnckgggvqlddsliVENLRRKRVFLEKAGarcivmpchlshiwhdevckgcsvpflhVSECVAKELKeanmkpleagsplriGVLAKNAILTAGfyqeklqhedc
Flexible Loop (DISEMBL)
mfdrsltvsvntlnypsctlGFVNSYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSFGSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSfsslnckgggvqlddsliveNLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFyqeklqhedc
Low Complexity Region (SEG)
MFDRSLTVSVNTLNYPSCTLGFVNSYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSFGSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEDC
Disordered region (IsUnstruct)
******TVSVNTLNYPSCTLGFVNSYRTLSR**************************************PFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ********
Disordered Region (DISOPRED)
********SVNTLNYPSCTLGFVNSYRTLS***********MP***VLL********************************TVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE**
Disordered Region (DISEMBL)
********SVNTLNYPSCTLGFVNSYRTLSRTRLNSNPLLAMPPSSVLLQTD**************KAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ********
Disordered Region (DISPRO)
*FDRSLTVSVNTLNYPSCTLGFVNSYRTLSRTRLNSNPLLAMPPSSVLLQTDES*K****************SDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ***C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFDRSLTVSVNTLNYPSCTLGFVNSYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSFGSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEDC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
P32960	227	Probable amino-acid racem	yes	no	0.526	0.559	0.243	1e-06

>sp|P32960|RACX_BACSU Probable amino-acid racemase OS=Bacillus subtilis (strain 168) GN=racX PE=2 SV=2

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 37/164 (22%)

Query: 83  VGIVGGASVDSTLNLLGKLV----QLSGEEND--FPFLL---CSDPLLNKELLSHDRSSF 133
           +GI+ G    ST   + K++    +L G  ND  +P ++   C  P      + HD    
Sbjct: 2   IGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTPFYADRPIDHDEMKK 61

Query: 134 SSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLH 193
           + ++   G V+L                EK G   I +PC+ +H++++E+ +  SVP LH
Sbjct: 62  AIID---GAVKL----------------EKTGVDFIALPCNTAHVYYEEIQQALSVPMLH 102

Query: 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237
           + E   KE+     K +         VL     + +  YQ+ L+
Sbjct: 103 IVEETIKEIPHPAKKAV---------VLGTEPTIQSAIYQKVLK 137

Probable aspartate or glutamate racemase involved in peptidoglycan modification during cortex synthesis.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 5EC: .EC: 1EC: .EC: 1EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
147819141	330	hypothetical protein VITISV_015733 [Viti	0.962	0.703	0.606	1e-75
224070839	330	predicted protein [Populus trichocarpa]	0.975	0.712	0.622	2e-74
255553111	330	racemase and epimerase, acting on amino	0.975	0.712	0.634	6e-74
225442873	305	PREDICTED: uncharacterized protein LOC10	0.842	0.665	0.649	6e-71
449469004	327	PREDICTED: uncharacterized protein LOC10	0.929	0.685	0.561	9e-65
356557255	363	PREDICTED: probable amino-acid racemase-	0.946	0.628	0.554	5e-61
87162592	321	Asp/Glu racemase [Medicago truncatula]	0.875	0.657	0.576	9e-61
357455147	318	Aspartate racemase [Medicago truncatula]	0.875	0.663	0.576	1e-60
110740155	330	hypothetical protein [Arabidopsis thalia	0.937	0.684	0.523	4e-59
15218160	330	aspartate-glutamate racemase-like protei	0.937	0.684	0.523	4e-59

>gi|147819141|emb|CAN68957.1| hypothetical protein VITISV_015733 [Vitis vinifera]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/239 (60%), Positives = 178/239 (74%), Gaps = 7/239 (2%)

Query: 6   LTVSVNTLNYPSCTLGFVNSYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSFG 65
           + +S ++L YPS  +G V+ +  L RT    NP+LA+PPSS LLQTDESG   ESK S G
Sbjct: 1   MAMSFHSLKYPSHMMGNVHKHXILXRTM--KNPILAVPPSSTLLQTDESGNLPESKNSSG 58

Query: 66  SKAAPFCSDA---LLNQANTVGIVGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPL 120
           S AA   SD+    +NQA TVGI+GG SVDSTLN L KLVQ S ++  +  PF+LCSDP+
Sbjct: 59  SDAASTNSDSASLFINQATTVGIIGGVSVDSTLNFLKKLVQWSSKDGGDSLPFVLCSDPV 118

Query: 121 LNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWH 180
           LNK+LLSH+RS F  L+ K    ++D + IV NL+ KR FLE++G +CIVMPCH+SH WH
Sbjct: 119 LNKQLLSHERSHFPLLSTKRESSRMDHTPIVGNLQSKRAFLERSGVQCIVMPCHISHSWH 178

Query: 181 DEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE 239
           DE+ +G SVPFLH+ ECVA+ELK A +KPLEAGSPLRIGVLA NA LTAGFYQEKLQ E
Sbjct: 179 DEISRGXSVPFLHMGECVARELKNAKLKPLEAGSPLRIGVLATNATLTAGFYQEKLQRE 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070839|ref|XP_002303258.1| predicted protein [Populus trichocarpa] gi|222840690|gb|EEE78237.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/241 (62%), Positives = 181/241 (75%), Gaps = 6/241 (2%)

Query: 1   MFDRSLTVSVNTLNYPSCTLGFVNSYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQES 60
           MFD SL +  +TL +P   LG VN++R L ++RL   P+LA+PPSS+LL TDESGKF +S
Sbjct: 1   MFDGSLAMPFHTL-HPCHLLGHVNTHRALHKSRLQ--PVLAIPPSSILLHTDESGKFPDS 57

Query: 61  KKSFGSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEEND--FPFLLCSD 118
           KK  G +     SD+LL+QANTVGI+GG SV+S LN L KLVQ S +E    FPF+LCSD
Sbjct: 58  KKGSGLRGRD-SSDSLLSQANTVGIIGGISVNSALNFLKKLVQGSSKEGKDCFPFVLCSD 116

Query: 119 PLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178
           P+LNKELLSH+R+S             D S I ENL+ KRVFLEK+G +CIVMPCH+ H 
Sbjct: 117 PVLNKELLSHERNSCPCPRRHNEKSPSDHSAIAENLQNKRVFLEKSGVQCIVMPCHILHS 176

Query: 179 WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238
           WHDEV KGCS+PFLH+ ECVA+ELKEA +KPLEAGSPLRIG+LA NA L AGFYQEKLQ+
Sbjct: 177 WHDEVSKGCSLPFLHMGECVARELKEAKLKPLEAGSPLRIGLLASNATLAAGFYQEKLQN 236

Query: 239 E 239
           E
Sbjct: 237 E 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553111|ref|XP_002517598.1| racemase and epimerase, acting on amino acids and derivatives, putative [Ricinus communis] gi|223543230|gb|EEF44762.1| racemase and epimerase, acting on amino acids and derivatives, putative [Ricinus communis]

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 153/241 (63%), Positives = 186/241 (77%), Gaps = 6/241 (2%)

Query: 1   MFDRSLTVSVNTLNYPSCTLGFVNSYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQES 60
           MFD SL +S ++LNYPS     VN+++T  + R  SN + A+PPSSV+L TDESG+F+ S
Sbjct: 1   MFDGSLIMSFHSLNYPSHRFNNVNTHKTSYKAR--SNLVQAVPPSSVILHTDESGRFRGS 58

Query: 61  KKSFGSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSD 118
           KKS GS +    SD LLNQANTVGI+GG SV+  LN L KLVQ S E+  +  PF+LCSD
Sbjct: 59  KKSSGSTSD--SSDLLLNQANTVGIIGGTSVNCALNFLKKLVQWSSEDGKDSLPFVLCSD 116

Query: 119 PLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178
           P+LNKELLSH+R  F S+  +    +LD + IVENLR KRVFLE++GARCIVMPCH+SH 
Sbjct: 117 PVLNKELLSHERDFFPSIGRQKEYSKLDHAQIVENLRSKRVFLERSGARCIVMPCHISHS 176

Query: 179 WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238
           WH++V KGCS+ FLH+ ECVA+ELKEA +KPLEAGSPLRIGVLA NA LTAGFYQEKLQ 
Sbjct: 177 WHEQVSKGCSIHFLHMGECVARELKEAKLKPLEAGSPLRIGVLAANATLTAGFYQEKLQS 236

Query: 239 E 239
           E
Sbjct: 237 E 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442873|ref|XP_002281753.1| PREDICTED: uncharacterized protein LOC100249822 [Vitis vinifera]

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 135/208 (64%), Positives = 161/208 (77%), Gaps = 5/208 (2%)

Query: 37  NPLLAMPPSSVLLQTDESGKFQESKKSFGSKAAPFCSDA---LLNQANTVGIVGGASVDS 93
           NP+LA+PPSS LLQTDESG   ESK S GS AA   SD+    +NQA TVGI+GG SVDS
Sbjct: 3   NPILAVPPSSTLLQTDESGNLPESKNSSGSDAASTNSDSASLFINQATTVGIIGGVSVDS 62

Query: 94  TLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIV 151
           TLN L KLVQ S ++  +  PF+LCSDP+LNK+LLSH+RS F  L+ K    ++D + IV
Sbjct: 63  TLNFLKKLVQWSSKDGGDSLPFVLCSDPVLNKQLLSHERSHFPLLSTKRESSRMDHTPIV 122

Query: 152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLE 211
            NL+ KR FLE++G +CIVMPCH+SH WHDE+ +G SVPFLH+ ECVA+ELK A +KPLE
Sbjct: 123 GNLQSKRAFLERSGVQCIVMPCHISHSWHDEISRGSSVPFLHMGECVARELKNAKLKPLE 182

Query: 212 AGSPLRIGVLAKNAILTAGFYQEKLQHE 239
           AGSPLRIGVLA NA LTAGFYQEKLQ E
Sbjct: 183 AGSPLRIGVLATNATLTAGFYQEKLQRE 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469004|ref|XP_004152211.1| PREDICTED: uncharacterized protein LOC101217164 [Cucumis sativus] gi|449532820|ref|XP_004173376.1| PREDICTED: uncharacterized protein LOC101225587 [Cucumis sativus]

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 132/235 (56%), Positives = 172/235 (73%), Gaps = 11/235 (4%)

Query: 13  LNYPSCTLGFVNSYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSFGS----KA 68
           L+  SC   +VN+ R   + RLN  P+ A+PPS+ LL TDES  F ESKK+ G     K 
Sbjct: 6   LSSQSCISAYVNTRRIQLQWRLN--PVQALPPST-LLHTDESEHFPESKKTSGFSSVLKT 62

Query: 69  APFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEEND----FPFLLCSDPLLNKE 124
               +  LL+Q+NTVGI+GG+SV+ST+N LGKLV+ S ++ +     PF+LCSDP L+ E
Sbjct: 63  NKDSTGILLSQSNTVGILGGSSVNSTVNFLGKLVKWSTKDGESQSGLPFVLCSDPTLSNE 122

Query: 125 LLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVC 184
           L   D+SS   LN K   + LD  L+VE+L+ KR FLE +GARCIVMPCH+SH+W+++V 
Sbjct: 123 LQVFDKSSHPVLNYKSEDLGLDSELVVESLKSKRTFLENSGARCIVMPCHISHLWYEDVS 182

Query: 185 KGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE 239
           KGC V FLH+++CVA+ELKEA +KPLEAGSPLRIGVLA NAIL+AG+YQEKLQ+E
Sbjct: 183 KGCPVTFLHMADCVARELKEAKLKPLEAGSPLRIGVLATNAILSAGYYQEKLQNE 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557255|ref|XP_003546933.1| PREDICTED: probable amino-acid racemase-like [Glycine max]

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 132/238 (55%), Positives = 165/238 (69%), Gaps = 10/238 (4%)

Query: 8   VSVNTLNYPSCTL--GFVN--SYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKS 63
           + V +L+YP  TL  G V   S R LS+TR     + A PPSS++L  DESGKF E  K 
Sbjct: 37  LDVMSLSYPFQTLLLGCVTTPSRRYLSKTRWYQ--VQATPPSSLILNADESGKFSE--KL 92

Query: 64  FGSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLL 121
            GS  A       + Q + VGI+GG S+D+TL  L KLV+ S E+  N  PF+LCSDPLL
Sbjct: 93  HGSNLASGRGAPFVTQGSAVGIIGGVSMDATLKFLRKLVEFSSEDGANSIPFVLCSDPLL 152

Query: 122 NKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHD 181
           +KELLS++RS F+S   K   ++ D S IV+ LR KRVFLE  G  C VMPC++SH W++
Sbjct: 153 SKELLSYERSIFASSTSKAENLKQDSSPIVQTLRNKRVFLENFGTSCTVMPCNVSHSWYE 212

Query: 182 EVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE 239
           +V +GCSVP LH++ECVAKELKEA +KPLEAGSPLRIGVLA NA L AG Y+EKLQ+E
Sbjct: 213 QVSEGCSVPVLHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGVYKEKLQNE 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87162592|gb|ABD28387.1| Asp/Glu racemase [Medicago truncatula]

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 139/241 (57%), Positives = 171/241 (70%), Gaps = 30/241 (12%)

Query: 12  TLNYPSCTL-GFVN------SYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSF 64
           +L Y S TL GFV+      + R L ++R  S  +L+ PPSSV+L  DESGKF  SK   
Sbjct: 5   SLCYQSQTLFGFVSILNPNLNPRYLCKSR--SWKVLSTPPSSVILNADESGKF--SKNLV 60

Query: 65  GS----KAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGE--ENDFPFLLCSD 118
           GS      +PF       Q  TVGI+GG SVD+TLN L KLV+LS +  +N  PFLLCSD
Sbjct: 61  GSVRNDSVSPFGY-----QGTTVGIIGGMSVDATLNFLRKLVELSSQDGQNPIPFLLCSD 115

Query: 119 PLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178
           P+LNKELLS++RS  S         ++D S IV++LR KRVFLE +GARCIVMPC++SH 
Sbjct: 116 PILNKELLSYERSLES--------FKVDSSQIVQSLRNKRVFLENSGARCIVMPCNVSHS 167

Query: 179 WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238
           W+++V  GCSVPFLH++ECVAKELKEA +KPLEAGSPLRIGVLA NA L AGFY+EKLQ+
Sbjct: 168 WYEQVSIGCSVPFLHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGFYKEKLQN 227

Query: 239 E 239
           E
Sbjct: 228 E 228

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455147|ref|XP_003597854.1| Aspartate racemase [Medicago truncatula] gi|355486902|gb|AES68105.1| Aspartate racemase [Medicago truncatula]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/241 (57%), Positives = 171/241 (70%), Gaps = 30/241 (12%)

Query: 12  TLNYPSCTL-GFVN------SYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSF 64
           +L Y S TL GFV+      + R L ++R  S  +L+ PPSSV+L  DESGKF  SK   
Sbjct: 2   SLCYQSQTLFGFVSILNPNLNPRYLCKSR--SWKVLSTPPSSVILNADESGKF--SKNLV 57

Query: 65  GS----KAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGE--ENDFPFLLCSD 118
           GS      +PF       Q  TVGI+GG SVD+TLN L KLV+LS +  +N  PFLLCSD
Sbjct: 58  GSVRNDSVSPFGY-----QGTTVGIIGGMSVDATLNFLRKLVELSSQDGQNPIPFLLCSD 112

Query: 119 PLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178
           P+LNKELLS++RS  S         ++D S IV++LR KRVFLE +GARCIVMPC++SH 
Sbjct: 113 PILNKELLSYERSLES--------FKVDSSQIVQSLRNKRVFLENSGARCIVMPCNVSHS 164

Query: 179 WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238
           W+++V  GCSVPFLH++ECVAKELKEA +KPLEAGSPLRIGVLA NA L AGFY+EKLQ+
Sbjct: 165 WYEQVSIGCSVPFLHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGFYKEKLQN 224

Query: 239 E 239
           E
Sbjct: 225 E 225

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740155|dbj|BAF01976.1| hypothetical protein [Arabidopsis thaliana]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 124/237 (52%), Positives = 160/237 (67%), Gaps = 11/237 (4%)

Query: 10  VNTLNYPSCTLGFV-NSYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSF---- 64
           +   N PS  L  +  S R   R RL+   +LAMPPSSVLL  DES    + KK F    
Sbjct: 3   LQIFNNPSHGLAHLCYSSRVSCRVRLSR--VLAMPPSSVLLHMDESNDLPKPKKGFCLSE 60

Query: 65  --GSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPL 120
              +      +D+LL QANTVGI+GG S DSTL  + KLV  S  +  +  PF+LCSDP 
Sbjct: 61  DSRNSLNSLPADSLLRQANTVGIIGGVSTDSTLKFVKKLVDWSSNDGKSSLPFVLCSDPA 120

Query: 121 LNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWH 180
           LNKELL ++ +S+ SL  +     +D  LIVENLR KR +LE+ GA+ I+MPCH++HIW+
Sbjct: 121 LNKELLLYEENSYPSLYHREESTPVDPKLIVENLRNKRRYLERCGAKLILMPCHIAHIWY 180

Query: 181 DEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237
           +EVC+G  VP LH+ EC+AKEL+EA MKPLEAG+PLR+GV+A +A L+AGFYQEKLQ
Sbjct: 181 EEVCEGSLVPLLHMGECIAKELQEAKMKPLEAGNPLRVGVMATSATLSAGFYQEKLQ 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218160|ref|NP_172993.1| aspartate-glutamate racemase-like protein [Arabidopsis thaliana] gi|5103839|gb|AAD39669.1|AC007591_34 Is a member of the PF|01177 Aspartate-glutamate racemase family. EST gb|T43554 comes from this gene [Arabidopsis thaliana] gi|26983862|gb|AAN86183.1| unknown protein [Arabidopsis thaliana] gi|332191198|gb|AEE29319.1| aspartate-glutamate racemase-like protein [Arabidopsis thaliana]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 124/237 (52%), Positives = 160/237 (67%), Gaps = 11/237 (4%)

Query: 10  VNTLNYPSCTLGFV-NSYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSF---- 64
           +   N PS  L  +  S R   R RL+   +LAMPPSSVLL  DES    + KK F    
Sbjct: 3   LQIFNNPSHGLAHLCYSSRVSCRVRLSR--VLAMPPSSVLLHMDESNDLPKPKKGFCLSE 60

Query: 65  --GSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPL 120
              +      +D+LL QANTVGI+GG S DSTL  + KLV  S  +  +  PF+LCSDP 
Sbjct: 61  DSRNSLNSLPADSLLRQANTVGIIGGVSTDSTLKFVKKLVDWSSNDGKSSLPFVLCSDPA 120

Query: 121 LNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWH 180
           LNKELL ++ +S+ SL  +     +D  LIVENLR KR +LE+ GA+ I+MPCH++HIW+
Sbjct: 121 LNKELLLYEENSYPSLYHREESTPVDPKLIVENLRNKRRYLERCGAKLILMPCHIAHIWY 180

Query: 181 DEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237
           +EVC+G  VP LH+ EC+AKEL+EA MKPLEAG+PLR+GV+A +A L+AGFYQEKLQ
Sbjct: 181 EEVCEGSLVPLLHMGECIAKELQEAKMKPLEAGNPLRVGVMATSATLSAGFYQEKLQ 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2037743	330	AT1G15410 [Arabidopsis thalian	0.921	0.672	0.536	5.9e-57
TIGR_CMR|SPO_2662	485	SPO_2662 "aspartate racemase,	0.576	0.286	0.273	3.6e-05
UNIPROTKB|Q81Q00	226	BAS2459 "Aspartate racemase fa	0.282	0.300	0.342	4.9e-05
TIGR_CMR|BA_2639	226	BA_2639 "aspartate racemase fa	0.282	0.300	0.342	4.9e-05
TIGR_CMR|CJE_0080	231	CJE_0080 "aspartate racemase,	0.580	0.606	0.276	9.2e-05

TAIR|locus:2037743 AT1G15410 [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 125/233 (53%), Positives = 161/233 (69%)

Query:    14 NYPSCTLGFV-NSYRTLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSF----GSKA 68
             N PS  L  +  S R   R RL+   +LAMPPSSVLL  DES    + KK F     S+ 
Sbjct:     7 NNPSHGLAHLCYSSRVSCRVRLSR--VLAMPPSSVLLHMDESNDLPKPKKGFCLSEDSRN 64

Query:    69 A--PFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKE 124
             +     +D+LL QANTVGI+GG S DSTL  + KLV  S  +  +  PF+LCSDP LNKE
Sbjct:    65 SLNSLPADSLLRQANTVGIIGGVSTDSTLKFVKKLVDWSSNDGKSSLPFVLCSDPALNKE 124

Query:   125 LLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVC 184
             LL ++ +S+ SL  +     +D  LIVENLR KR +LE+ GA+ I+MPCH++HIW++EVC
Sbjct:   125 LLLYEENSYPSLYHREESTPVDPKLIVENLRNKRRYLERCGAKLILMPCHIAHIWYEEVC 184

Query:   185 KGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237
             +G  VP LH+ EC+AKEL+EA MKPLEAG+PLR+GV+A +A L+AGFYQEKLQ
Sbjct:   185 EGSLVPLLHMGECIAKELQEAKMKPLEAGNPLRVGVMATSATLSAGFYQEKLQ 237

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016855 "racemase and epimerase activity, acting on amino acids and derivatives" evidence=IEA;ISS

TIGR_CMR|SPO_2662 SPO_2662 "aspartate racemase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 124 (48.7 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 43/157 (27%), Positives = 79/157 (50%)

Query:    83 VGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGG 142
             VG+VGG    +T++ L K+V+ +  E D   +     ++ +     DR+   +L  KGG 
Sbjct:   246 VGVVGGVGPAATVDFLKKIVEGTAAERDQDHIKL---IVEQNPQIPDRTE--NL-VKGGP 299

Query:   143 VQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202
                D +L +    +K   LE+AGA+ I +PC+ +H + D + K   +P + +    A+ +
Sbjct:   300 ---DPTLALYATCKK---LERAGAQAIAIPCNTAHAFVDRIQKNLDIPIISILTETARFI 353

Query:   203 KEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE 239
                 + P E G   ++ VLA +  + +G YQ  L+ +
Sbjct:   354 --GALHP-EIG---KVAVLATSGTIQSGLYQSALRDQ 384

GO:0009066 "aspartate family amino acid metabolic process" evidence=ISS

GO:0047689 "aspartate racemase activity" evidence=ISS

UNIPROTKB|Q81Q00 BAS2459 "Aspartate racemase family protein" [Bacillus anthracis (taxid:1392)]

 Score = 117 (46.2 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query:   161 LEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGV 220
             +EK+GA C++M  +  H++ +EV    S+P LH+ +  AKE+ E N+K        RIG+
Sbjct:    69 VEKSGADCLLMCSNTVHLFAEEVESAISIPLLHIGDVSAKEMVEQNIK--------RIGL 120

Query:   221 LAKNAILTAGFYQEKL 236
             L     +   FY+ +L
Sbjct:   121 LGTKQTMEQDFYKSRL 136

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_2639 BA_2639 "aspartate racemase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 117 (46.2 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query:   161 LEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGV 220
             +EK+GA C++M  +  H++ +EV    S+P LH+ +  AKE+ E N+K        RIG+
Sbjct:    69 VEKSGADCLLMCSNTVHLFAEEVESAISIPLLHIGDVSAKEMVEQNIK--------RIGL 120

Query:   221 LAKNAILTAGFYQEKL 236
             L     +   FY+ +L
Sbjct:   121 LGTKQTMEQDFYKSRL 136

GO:0008150 "biological_process" evidence=ND

GO:0016855 "racemase and epimerase activity, acting on amino acids and derivatives" evidence=ISS

TIGR_CMR|CJE_0080 CJE_0080 "aspartate racemase, putative" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 115 (45.5 bits), Expect = 9.2e-05, P = 9.2e-05
 Identities = 44/159 (27%), Positives = 76/159 (47%)

Query:    82 TVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGG 141
             T+GI+GG S +ST+     + Q     ND    L S  +L   L S +     +L  +  
Sbjct:     3 TIGIIGGMSFESTITYYKTINQAI---NDKLKSLNSAKIL---LYSVNFEEIENLQSQDK 56

Query:   142 GVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKE 201
               +   + I+    +K   LE AGA  I++  +  H   DE+ +  ++P LH+++  AK 
Sbjct:    57 WQEA--AQILTQCAKK---LELAGANFIIIATNTMHKVFDEIQQNINIPILHIAKSSAKA 111

Query:   202 LKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHED 240
             LK+ N++        +IG+L     +T  FY++ L  E+
Sbjct:   112 LKQENIQ--------KIGLLGTKYTMTQDFYKKMLIEEN 142


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      241       241   0.00094  113 3  11 22  0.43    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  180 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  21.60u 0.08s 21.68t   Elapsed:  00:00:02
  Total cpu time:  21.61u 0.08s 21.69t   Elapsed:  00:00:03
  Start:  Mon May 20 15:08:10 2013   End:  Mon May 20 15:08:13 2013

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
COG1794	230	COG1794, RacX, Aspartate racemase [Cell envelope b	1e-18
pfam01177	209	pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemas	6e-11
TIGR00035	229	TIGR00035, asp_race, aspartate racemase	2e-09
PRK10200	230	PRK10200, PRK10200, putative racemase; Provisional	3e-04

>gnl|CDD|224707 COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 19/159 (11%)

Query: 81  NTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKG 140
            T+GI+GG   +ST     K+ +    +      L S  LL   +   +  +      + 
Sbjct: 2   KTIGILGGMGPESTAPYYRKINEAVRAKLG---GLHSAELLLYSVDFPEIETL----QRA 54

Query: 141 GGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAK 200
           G    +   I+ +  +K   LE+AGA  IV+P +  H   D++ K   +P LH+ +  AK
Sbjct: 55  GEWD-EAGEILIDAAKK---LERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAK 110

Query: 201 ELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE 239
            +K A  K        ++G+L     +  GFY+++L+ +
Sbjct: 111 AIKAAGAK--------KVGLLGTRFTMEQGFYRKRLEEK 141

Length = 230

>gnl|CDD|216346 pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase

 Score = 59.7 bits (145), Expect = 6e-11
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 147 DSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEAN 206
           +  +++ L      L KAGA  IV+ C+ +H   D + +   +P + + E   K LK + 
Sbjct: 39  EEQLLDRLLEAARRLAKAGADAIVIACNTAHPGVDGLREATDIPVIGIVEATLKALKLSG 98

Query: 207 MKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237
            K        R+GVLA    + +G Y+E L 
Sbjct: 99  AK--------RVGVLATYGTIVSGLYRELLA 121

This family contains aspartate racemase, maleate isomerases EC:5.2.1.1, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase EC:4.1.1.76. Length = 209

>gnl|CDD|213495 TIGR00035, asp_race, aspartate racemase

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 27/160 (16%)

Query: 81  NTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSH----DRSSFSSL 136
           N +GI+GG    +T  L  ++ + +  + D            + L ++    DR+++   
Sbjct: 2   NMIGILGGMGPLATAELFRRINEKTKAKRDQEHP-------AEVLFNNPNIPDRTAYI-- 52

Query: 137 NCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE 196
              G G      ++++   +    LE AGA  I+MPC+ +H + +++ K   +P + + E
Sbjct: 53  --LGRGEDRPRPILIDIAVK----LENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMIE 106

Query: 197 CVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236
             A+ +KE  +K        + G+L     +  G Y+ ++
Sbjct: 107 ETAEAVKEDGVK--------KAGLLGTKGTMKDGVYEREM 138

Asparate racemases and some close homologs of unknown function are related to the more common glutamate racemases, but form a distinct evolutionary branch. This model identifies members of the aspartate racemase-related subset of amino acid racemases [Energy metabolism, Amino acids and amines]. Length = 229

>gnl|CDD|182300 PRK10200, PRK10200, putative racemase; Provisional

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 161 LEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGV 220
           L++AGA  IV+  +  H   D +   CS+PFLH+++   + +  A M         R+ +
Sbjct: 71  LQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATGRAITGAGMT--------RVAL 122

Query: 221 LAKNAILTAGFYQEKLQHE 239
           L     +   FY+ +L  +
Sbjct: 123 LGTRYTMEQDFYRGRLTEQ 141

Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
COG1794	230	RacX Aspartate racemase [Cell envelope biogenesis,	100.0
PRK10200	230	putative racemase; Provisional	100.0
TIGR00035	229	asp_race aspartate racemase.	100.0
TIGR00067	251	glut_race glutamate racemase. The most closely rel	99.88
PRK00865	261	glutamate racemase; Provisional	99.82
COG0796	269	MurI Glutamate racemase [Cell envelope biogenesis,	99.78
PF01177	216	Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro	99.71
PRK07475	245	hypothetical protein; Provisional	99.48
PRK00865	261	glutamate racemase; Provisional	96.53
COG4126	230	Hydantoin racemase [Amino acid transport and metab	96.49
PF00532	279	Peripla_BP_1: Periplasmic binding proteins and sug	96.09
PRK10481	224	hypothetical protein; Provisional	96.01
TIGR00035	229	asp_race aspartate racemase.	95.32
COG3473	238	Maleate cis-trans isomerase [Secondary metabolites	95.27
TIGR00067	251	glut_race glutamate racemase. The most closely rel	95.24
PF01177	216	Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro	94.58
TIGR02990	239	ectoine_eutA ectoine utilization protein EutA. Mem	94.52
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	93.93
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	93.92
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	93.72
COG1609	333	PurR Transcriptional regulators [Transcription]	93.64
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	93.45
COG2048	293	HdrB Heterodisulfide reductase, subunit B [Energy	93.4
PLN02424	332	ketopantoate hydroxymethyltransferase	93.29
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	93.06
PRK10481	224	hypothetical protein; Provisional	93.03
COG0796	269	MurI Glutamate racemase [Cell envelope biogenesis,	92.45
cd06298	268	PBP1_CcpA_like Ligand-binding domain of the catabo	92.34
PRK11303	328	DNA-binding transcriptional regulator FruR; Provis	91.47
cd06280	263	PBP1_LacI_like_4 Ligand-binding domain of uncharac	91.44
PF07302	221	AroM: AroM protein; InterPro: IPR010843 This famil	91.39
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	91.37
PRK10423	327	transcriptional repressor RbsR; Provisional	91.33
PRK10014	342	DNA-binding transcriptional repressor MalI; Provis	91.3
TIGR02417	327	fruct_sucro_rep D-fructose-responsive transcriptio	91.04
PRK07475	245	hypothetical protein; Provisional	91.02
PRK14987	331	gluconate operon transcriptional regulator; Provis	90.77
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	90.62
COG4126	230	Hydantoin racemase [Amino acid transport and metab	90.54
cd06273	268	PBP1_GntR_like_1 This group includes the ligand-bi	90.19
cd06286	260	PBP1_CcpB_like Ligand-binding domain of a novel tr	89.97
COG1794	230	RacX Aspartate racemase [Cell envelope biogenesis,	89.44
cd06289	268	PBP1_MalI_like Ligand-binding domain of MalI, a tr	89.23
TIGR01481	329	ccpA catabolite control protein A. Catabolite cont	88.97
cd06333	312	PBP1_ABC-type_HAAT_like Type I periplasmic binding	88.93
cd06326	336	PBP1_STKc_like Type I periplasmic binding domain o	88.54
cd01575	268	PBP1_GntR Ligand-binding domain of DNA transcripti	88.49
cd06282	266	PBP1_GntR_like_2 Ligand-binding domain of putative	87.58
cd06300	272	PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi	87.57
PRK10727	343	DNA-binding transcriptional regulator GalR; Provis	87.16
TIGR03288	290	CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, s	87.04
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	86.69
cd06295	275	PBP1_CelR Ligand binding domain of a transcription	86.64
cd06275	269	PBP1_PurR Ligand-binding domain of purine represso	86.35
cd06317	275	PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi	86.33
PRK10703	341	DNA-binding transcriptional repressor PurR; Provis	86.04
cd06356	334	PBP1_Amide_Urea_BP_like Periplasmic component (Fmd	85.94
cd06267	264	PBP1_LacI_sugar_binding_like Ligand binding domain	85.63
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	85.54
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	84.92
cd01542	259	PBP1_TreR_like Ligand-binding domain of DNA transc	84.9
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	84.85
PF07302	221	AroM: AroM protein; InterPro: IPR010843 This famil	84.66
cd06283	267	PBP1_RegR_EndR_KdgR_like Ligand-binding domain of	84.62
PRK10936	343	TMAO reductase system periplasmic protein TorT; Pr	84.46
cd01545	270	PBP1_SalR Ligand-binding domain of DNA transcripti	84.19
cd06270	268	PBP1_GalS_like Ligand binding domain of DNA transc	83.68
PRK10355	330	xylF D-xylose transporter subunit XylF; Provisiona	83.41
cd06297	269	PBP1_LacI_like_12 Ligand-binding domain of unchara	83.19
cd06277	268	PBP1_LacI_like_1 Ligand-binding domain of uncharac	82.85
cd06278	266	PBP1_LacI_like_2 Ligand-binding domain of uncharac	82.85
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	82.6
cd06336	347	PBP1_ABC_ligand_binding_like_3 Type I periplasmic	82.2
TIGR02990	239	ectoine_eutA ectoine utilization protein EutA. Mem	82.17
cd06296	270	PBP1_CatR_like Ligand-binding domain of a LacI-lik	82.15
TIGR02405	311	trehalos_R_Ecol trehalose operon repressor, proteo	81.85
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	81.61
cd01391	269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	81.2
cd06281	269	PBP1_LacI_like_5 Ligand-binding domain of uncharac	80.86
cd06325	281	PBP1_ABC_uncharacterized_transporter Type I peripl	80.75
PRK09492	315	treR trehalose repressor; Provisional	80.71
cd06299	265	PBP1_LacI_like_13 Ligand-binding domain of DNA-bin	80.29

>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.5e-39  Score=284.80  Aligned_cols=140  Identities=26%  Similarity=0.355  Sum_probs=123.9

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      ||+|||||||||+||+.|||+||+.+++.   +|.+.++.+.+++++           ....   +.+++|+...++|.+
T Consensus         1 mk~iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~-----------~~~~---q~~~~w~~~~~~L~~   66 (230)
T COG1794           1 MKTIGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPE-----------IETL---QRAGEWDEAGEILID   66 (230)
T ss_pred             CceeEeccCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCccc-----------HHHH---HccCccccHHHHHHH
Confidence            79999999999999999999999999964   444444444454443           2222   257899999999999


Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHH
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL  236 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L  236 (241)
                      .++.|++.|||||++||||+|.++|++++.+++|+|||+|+|++++++.|.|        |||||||++||+++||+++|
T Consensus        67 ~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~k--------kvgLLgT~~Tm~~~fY~~~l  138 (230)
T COG1794          67 AAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAK--------KVGLLGTRFTMEQGFYRKRL  138 (230)
T ss_pred             HHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHhcCCc--------eeEEeeccchHHhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988        99999999999999999999


Q ss_pred             HhcCC
Q 026201          237 QHEDC  241 (241)
Q Consensus       237 ~~~G~  241 (241)
                      +++|+
T Consensus       139 ~~~gi  143 (230)
T COG1794         139 EEKGI  143 (230)
T ss_pred             HHCCc
Confidence            99985

>PRK10200 putative racemase; Provisional

Probab=100.00  E-value=8.8e-38  Score=275.67  Aligned_cols=139  Identities=22%  Similarity=0.324  Sum_probs=123.7

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      ||+|||||||||+||++||++|++.+++.   +|++.++++++.+||+...              ...++|+...+.|.+
T Consensus         1 mk~iGilGGmGp~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~--------------~~~~~~~~~~~~l~~   66 (230)
T PRK10200          1 MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEEC--------------QRRGEWDKTGDILAE   66 (230)
T ss_pred             CCeEEEccCCCHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHH--------------HHCCCcchHHHHHHH
Confidence            78999999999999999999999999974   7999999999999875210              023466677788999


Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHH
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL  236 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L  236 (241)
                      .+++|+++|||+|||||||+|+|++++++.+++|||||++++++++++.+.+        |||||||++|+++++|++.|
T Consensus        67 ~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii~~~~~~~~~~~~~--------~VglLaT~~Ti~s~~Y~~~l  138 (230)
T PRK10200         67 AALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATGRAITGAGMT--------RVALLGTRYTMEQDFYRGRL  138 (230)
T ss_pred             HHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehHHHHHHHHHHcCCC--------eEEEeccHHHHHHhHHHHHH
Confidence            9999999999999999999999999999999999999999999988876554        99999999999999999999


Q ss_pred             Hhc-C
Q 026201          237 QHE-D  240 (241)
Q Consensus       237 ~~~-G  240 (241)
                      ++. |
T Consensus       139 ~~~~g  143 (230)
T PRK10200        139 TEQFS  143 (230)
T ss_pred             HHhcC
Confidence            865 6

>TIGR00035 asp_race aspartate racemase

Probab=100.00  E-value=2.3e-37  Score=271.62  Aligned_cols=140  Identities=23%  Similarity=0.403  Sum_probs=126.1

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      ||+|||||||||+||++||++|++.+++.   +|++++++++|.+||+...              ...++|+.+.+.+.+
T Consensus         1 m~~iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~--------------~~~~~~~~~~~~l~~   66 (229)
T TIGR00035         1 ENMIGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAY--------------ILGRGEDRPRPILID   66 (229)
T ss_pred             CCeEEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHH--------------HhcCCcchHHHHHHH
Confidence            78999999999999999999999999963   8999999999999875321              023456678888999


Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHH
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL  236 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L  236 (241)
                      .+++|+++|||+|||||||+|+|++++++.+++||+||++++++++++.+.+        |||||||++|+++++|++.|
T Consensus        67 ~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~~~~~~~--------~VgvLaT~~T~~s~~y~~~l  138 (229)
T TIGR00035        67 IAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAVKEDGVK--------KAGLLGTKGTMKDGVYEREM  138 (229)
T ss_pred             HHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCCC--------EEEEEecHHHHHhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999877655        99999999999999999999


Q ss_pred             HhcCC
Q 026201          237 QHEDC  241 (241)
Q Consensus       237 ~~~G~  241 (241)
                      +++|+
T Consensus       139 ~~~g~  143 (229)
T TIGR00035       139 KKHGI  143 (229)
T ss_pred             HHCCC
Confidence            99885

>TIGR00067 glut_race glutamate racemase

Probab=99.88  E-value=9.9e-22  Score=175.68  Aligned_cols=127  Identities=19%  Similarity=0.304  Sum_probs=103.9

Q ss_pred             EEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHH
Q 026201           83 VGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFL  161 (241)
Q Consensus        83 IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~L  161 (241)
                      |||+. |+|.+   -.++.|.+..+..   +++-+-|..           .+|+       .....+++.+++.+.+++|
T Consensus         1 IgvfDSGiGGl---tv~~~l~~~~p~~---~~iy~~D~~-----------~~PY-------G~ks~~~i~~~~~~~~~~L   56 (251)
T TIGR00067         1 IGVFDSGVGGL---SVLKEIRKQLPKE---HYIYVGDTK-----------RFPY-------GEKSPEFILEYVLELLTFL   56 (251)
T ss_pred             CEEEeCCccHH---HHHHHHHHHCCCC---CEEEEecCC-----------CCCC-------CCCCHHHHHHHHHHHHHHH
Confidence            68888 99999   5666676666654   333333321           2333       5677889999999999999


Q ss_pred             H-HhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHhc
Q 026201          162 E-KAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE  239 (241)
Q Consensus       162 e-~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~~  239 (241)
                      + +.|||+|||||||||+ |++++++.+++|||+|++++++.+.+..       ..++||||||++|+++++|++.+++.
T Consensus        57 ~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~iie~~v~~a~~~~-------~~~~IgvLAT~~Ti~s~~y~~~i~~~  129 (251)
T TIGR00067        57 KERHNIKLLVVACNTASALALEDLQRNFDFPVVGVIEPAIKAAIRLT-------ANGRVLVIATNATIKSNAYHEALKEI  129 (251)
T ss_pred             HHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEeecHHHHHHHHHhC-------CCCeEEEEeCHHHHhhhHHHHHHHHh
Confidence            9 9999999999999995 5899999999999999999999997642       23499999999999999999999887


Q ss_pred             C
Q 026201          240 D  240 (241)
Q Consensus       240 G  240 (241)
                      |
T Consensus       130 ~  130 (251)
T TIGR00067       130 A  130 (251)
T ss_pred             C
Confidence            6

The most closely related proteins differing in function are aspartate racemases.

>PRK00865 glutamate racemase; Provisional

Probab=99.82  E-value=2.7e-19  Score=160.48  Aligned_cols=129  Identities=18%  Similarity=0.253  Sum_probs=103.9

Q ss_pred             CCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        80 ~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      .+.|||+. |+|.+   -.++.|.+..+..   +++-+-|..           .+|+       ...+.++|.+++.+.+
T Consensus         5 ~~~IgvfDSGiGGL---tvl~~i~~~lp~~---~~iY~~D~~-----------~~PY-------G~ks~~~i~~~~~~~~   60 (261)
T PRK00865          5 NAPIGVFDSGVGGL---TVLREIRRLLPDE---HIIYVGDTA-----------RFPY-------GEKSEEEIRERTLEIV   60 (261)
T ss_pred             CCeEEEEECCccHH---HHHHHHHHHCCCC---CEEEEecCC-----------CCCC-------CCCCHHHHHHHHHHHH
Confidence            35799999 99999   6677777777765   233323221           2222       5677889999999999


Q ss_pred             HHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHH
Q 026201          159 VFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ  237 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~  237 (241)
                      ++|++.|||+|||||||+|. +++++++.+++||++ ++++++.+.+.       ..+++||||||++|+++++|++.++
T Consensus        61 ~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvig-i~~a~~~a~~~-------~~~~~igVLaT~~Ti~s~~y~~~i~  132 (261)
T PRK00865         61 EFLLEYGVKMLVIACNTASAVALPDLRERYDIPVVG-IVPAIKPAAAL-------TRNGRIGVLATPGTVKSAAYRDLIA  132 (261)
T ss_pred             HHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEe-eHHHHHHHHHh-------cCCCeEEEEECHHHhhchHHHHHHH
Confidence            99999999999999999996 679999999999999 78888777653       1245999999999999999999998


Q ss_pred             hcC
Q 026201          238 HED  240 (241)
Q Consensus       238 ~~G  240 (241)
                      +.|
T Consensus       133 ~~~  135 (261)
T PRK00865        133 RFA  135 (261)
T ss_pred             HhC
Confidence            875

>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=2.3e-18  Score=155.40  Aligned_cols=128  Identities=18%  Similarity=0.257  Sum_probs=107.4

Q ss_pred             CCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        80 ~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      .++|||+. |+|.+   .++|.|.+..+.+ +.-++-++            . -+|+       .+.+.++|.++..+++
T Consensus         5 ~~~IgvFDSGVGGL---sVlrei~~~LP~e-~~iY~~D~------------a-~~PY-------G~ks~e~I~~~~~~i~   60 (269)
T COG0796           5 QPPIGVFDSGVGGL---SVLREIRRQLPDE-DIIYVGDT------------A-RFPY-------GEKSEEEIRERTLEIV   60 (269)
T ss_pred             CCeEEEEECCCCcH---HHHHHHHHHCCCC-cEEEEecC------------C-CCCC-------CCCCHHHHHHHHHHHH
Confidence            45899999 99998   7889999888876 33333322            1 2233       5678899999999999


Q ss_pred             HHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHH
Q 026201          159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ  237 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~  237 (241)
                      ++|.+.+++++|||||||++. ++++|+++++||++++ +.++.+.+.       +++++||||||++|+++.+|++.++
T Consensus        61 ~~l~~~~ik~lVIACNTASa~al~~LR~~~~iPVvGvi-Paik~A~~~-------t~~~~IgViaT~~Tvks~~y~~~i~  132 (269)
T COG0796          61 DFLLERGIKALVIACNTASAVALEDLREKFDIPVVGVI-PAIKPAVAL-------TRNGRIGVIATPATVKSNAYRDLIA  132 (269)
T ss_pred             HHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCEEEec-cchHHHHHh-------ccCCeEEEEeccchhccHHHHHHHH
Confidence            999999999999999999997 5999999999999999 888877775       3567999999999999999999998


Q ss_pred             hc
Q 026201          238 HE  239 (241)
Q Consensus       238 ~~  239 (241)
                      +.
T Consensus       133 ~~  134 (269)
T COG0796         133 RF  134 (269)
T ss_pred             Hh
Confidence            53

>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase

Probab=99.71  E-value=2.1e-17  Score=141.33  Aligned_cols=132  Identities=22%  Similarity=0.305  Sum_probs=104.2

Q ss_pred             EeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhC
Q 026201           86 VGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAG  165 (241)
Q Consensus        86 IGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~G  165 (241)
                      ||||+|.++..|+++|.++.+......+.+.+.+.+|+.+...              ....++ +.+.+.+.++.|++.|
T Consensus         1 Ig~i~p~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~p~~~~~~--------------~~~~~~-~~~~~~~~~~~l~~~g   65 (216)
T PF01177_consen    1 IGVISPNSNLTVERELRRMLPAREGQEVYFHDTRGFPDRIKEE--------------DAGMSA-ILDRLIEAAEKLEKAG   65 (216)
T ss_dssp             EEEESSSTTHHHHHHHHHHSTTSCCTEEEEEETTTSCTSHHHH--------------HHHHHH-HHHHHHHHHHHHHHTT
T ss_pred             CEEEEchHHHHHHHHHHHHhccccCCEEEEEeCCCCCCccHHH--------------hcchHH-HHHHHHHHHHHHHhCC
Confidence            5777999999999999999998722233333322233211110              000223 6667888999999999


Q ss_pred             CcEEEEeCCchhhhHHHHh-ccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHhc-CC
Q 026201          166 ARCIVMPCHLSHIWHDEVC-KGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE-DC  241 (241)
Q Consensus       166 ad~IvIaCNTAH~~~d~l~-~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~~-G~  241 (241)
                      +|+|+++|||+|+++++++ +.+++|++++++++++++.+ +.+        |||||+|..|..++.|++.++++ |+
T Consensus        66 ~d~i~i~C~s~~~~~~~~~~~~~~iPv~~~~~a~~~~~~~-~~~--------ri~vl~t~~~~~~~~~~~~~~~~~gi  134 (216)
T PF01177_consen   66 VDAIVIACNSAHPFVDELRKERVGIPVVGIVEAALEAAKA-GGK--------RIGVLTTYTTEKSPLYEEFIEEAAGI  134 (216)
T ss_dssp             ESEEEESSHHHHHHHHHHHHHHHSSEEEESHHHHHHHHHH-TSS--------EEEEEESHHHHHHTHHHHHHHHCTTE
T ss_pred             CCEEEEcCCchhhhHHHHhhhcCceEEEeccHHHHHHHHh-cCC--------EEEEEecCcccchHHHHHHHHHhcCC
Confidence            9999999999999999999 89999999999999999888 666        99999999999999999999998 74

Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....

>PRK07475 hypothetical protein; Provisional

Probab=99.48  E-value=1.2e-13  Score=123.15  Aligned_cols=85  Identities=16%  Similarity=0.247  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHH
Q 026201          148 SLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAIL  227 (241)
Q Consensus       148 ~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~  227 (241)
                      +.+++.+.++++.|++.|||+|+++|||+|+|++++++.+++|++++..++++.+++...      ..+|||||+|.+| 
T Consensus        61 ~~~~~~l~~aa~~L~~~G~d~I~~~Cgt~~~~~~~l~~~~~VPv~~ss~~~v~~l~~~~~------~~~kIGILtt~~t-  133 (245)
T PRK07475         61 PSLLDAFVAAARELEAEGVRAITTSCGFLALFQRELAAALGVPVATSSLLQVPLIQALLP------AGQKVGILTADAS-  133 (245)
T ss_pred             ccHHHHHHHHHHHHHHcCCCEEEechHHHHHHHHHHHHHcCCCEeccHHHHHHHHHHhcc------CCCeEEEEeCCch-
Confidence            346777889999999999999999999999999999999999999999999999888631      1349999999999 


Q ss_pred             hhhhHHHHHHhcCC
Q 026201          228 TAGFYQEKLQHEDC  241 (241)
Q Consensus       228 ~s~~Y~~~L~~~G~  241 (241)
                        .+|++.|++.|+
T Consensus       134 --~l~~~~l~~~Gi  145 (245)
T PRK07475        134 --SLTPAHLLAVGV  145 (245)
T ss_pred             --hhhHHHHHhCCC
Confidence              489999999986

>PRK00865 glutamate racemase; Provisional

Probab=96.53  E-value=0.026  Score=50.81  Aligned_cols=108  Identities=16%  Similarity=0.200  Sum_probs=67.5

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      ..++|||+|=.+...+ .+|++..+....+  ..+.....+..-+.+..               ...+.+...+.+.+.+
T Consensus       109 ~~~~igVLaT~~Ti~s-~~y~~~i~~~~~~--~~v~~~~~~~lv~~ie~---------------g~~~~~~~~~~l~~~l  170 (261)
T PRK00865        109 RNGRIGVLATPGTVKS-AAYRDLIARFAPD--CQVESLACPELVPLVEA---------------GILGGPVTLEVLREYL  170 (261)
T ss_pred             CCCeEEEEECHHHhhc-hHHHHHHHHhCCC--CEEEEecCHHHHHHHhC---------------CCcCCHHHHHHHHHHH
Confidence            4578999975554433 4556655544322  22332333322111110               1112244556677778


Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHH
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKE  204 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~  204 (241)
                      +.|++.|+|.||+.|--...+.+.+++.+  ++|+|+-.+++++.+.+
T Consensus       171 ~~l~~~g~d~iILGCTh~p~l~~~i~~~~~~~v~vIDp~~~~a~~~~~  218 (261)
T PRK00865        171 APLLAAGIDTLVLGCTHYPLLKPEIQQVLGEGVTLIDSGEAIARRVAR  218 (261)
T ss_pred             HHHhcCCCCEEEECCcCHHHHHHHHHHHcCCCCEEECCHHHHHHHHHH
Confidence            88888899999999975555668888865  48999999999888765

>COG4126 Hydantoin racemase [Amino acid transport and metabolism]

Probab=96.49  E-value=0.02  Score=51.09  Aligned_cols=57  Identities=14%  Similarity=0.203  Sum_probs=48.5

Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA  225 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~  225 (241)
                      ..-+..|||.|+|+|-.= +-.+.+++.+.+|+++|.++.+..+..-|         +|++|+.|..
T Consensus        63 ~~~~~~GvdaiiIaCf~D-Pgl~~~Re~~~~PviGi~eAsv~~A~~vg---------rrfsViTtt~  119 (230)
T COG4126          63 ADGEEQGVDAIIIACFSD-PGLAAARERAAIPVIGICEASVLAALFVG---------RRFSVITTTE  119 (230)
T ss_pred             hcccccCCcEEEEEecCC-hHHHHHHHHhCCCceehhHHHHHHHHHhc---------ceEEEEecCc
Confidence            345778999999999987 88899999999999999999988776653         3899998854

>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators

Probab=96.09  E-value=0.067  Score=48.06  Aligned_cols=119  Identities=14%  Similarity=0.251  Sum_probs=73.6

Q ss_pred             CeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201           81 NTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK  157 (241)
Q Consensus        81 k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~  157 (241)
                      ++||||=   |.-+-.||-.|.+...+.   ....+++++-.                         .+.+.-     +.
T Consensus         2 ~~IGviv---p~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~-------------------------~~~~~e-----~~   48 (279)
T PF00532_consen    2 KTIGVIV---PDISNPFFAEIIRGIEQEAREHGYQLLLCNTG-------------------------DDEEKE-----EY   48 (279)
T ss_dssp             CEEEEEE---SSSTSHHHHHHHHHHHHHHHHTTCEEEEEEET-------------------------TTHHHH-----HH
T ss_pred             CEEEEEE---CCCCCcHHHHHHHHHHHHHHHcCCEEEEecCC-------------------------CchHHH-----HH
Confidence            5777773   222556777777777643   45556555511                         111111     34


Q ss_pred             HHHHHHhCCcEEEEeCCchh-hhHHHHhccCCCCee---------------ec-----cHHHHHHHHHhcCCCCCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFL---------------HV-----SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH-~~~d~l~~~~~vPil---------------~I-----id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      ++.|.+.+||-|++.+.+.+ ..+..+.+. ++|+|               .+     ...+.+++.+.|.+        
T Consensus        49 i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~-~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~--------  119 (279)
T PF00532_consen   49 IELLLQRRVDGIILASSENDDEELRRLIKS-GIPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHR--------  119 (279)
T ss_dssp             HHHHHHTTSSEEEEESSSCTCHHHHHHHHT-TSEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCC--------
T ss_pred             HHHHHhcCCCEEEEecccCChHHHHHHHHc-CCCEEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhcccC--------
Confidence            46789999999999988777 445555444 44443               32     12456677777766        


Q ss_pred             E-EEEEecH---HHHhhhh--HHHHHHhcCC
Q 026201          217 R-IGVLAKN---AILTAGF--YQEKLQHEDC  241 (241)
Q Consensus       217 r-VGLLaT~---~T~~s~~--Y~~~L~~~G~  241 (241)
                      + |++++.+   .+...++  |++.++++|+
T Consensus       120 ~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl  150 (279)
T PF00532_consen  120 RPIAFIGGPEDSSTSRERLQGYRDALKEAGL  150 (279)
T ss_dssp             STEEEEEESTTTHHHHHHHHHHHHHHHHTTS
T ss_pred             CeEEEEecCcchHHHHHHHHHHHHHHHHcCC
Confidence            8 9999875   3444455  8999999885

The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....

>PRK10481 hypothetical protein; Provisional

Probab=96.01  E-value=0.033  Score=49.70  Aligned_cols=76  Identities=12%  Similarity=0.079  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 026201          144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAK  223 (241)
Q Consensus       144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT  223 (241)
                      .....++...+++.++.|++.|+|.|++.|----.-++..+.-.-.|...| ..+++++...          .||||+..
T Consensus        69 ~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i-~~lv~Al~~g----------~riGVitP  137 (224)
T PRK10481         69 HVSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRIL-PPLVAAIVGG----------HQVGVIVP  137 (224)
T ss_pred             EEEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhH-HHHHHHhcCC----------CeEEEEEe
Confidence            335677888999999999999999999999765344555555555676665 5566665432          39999987


Q ss_pred             HHHHhhh
Q 026201          224 NAILTAG  230 (241)
Q Consensus       224 ~~T~~s~  230 (241)
                      -...-..
T Consensus       138 ~~~qi~~  144 (224)
T PRK10481        138 VEEQLAQ  144 (224)
T ss_pred             CHHHHHH
Confidence            5444333

>TIGR00035 asp_race aspartate racemase

Probab=95.32  E-value=0.1  Score=45.86  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=65.4

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      .++|||+|=-+...+-. |++..+...    +.++. -.+...+.+...   .+...      ..++.+...+.+.+.++
T Consensus       117 ~~~VgvLaT~~T~~s~~-y~~~l~~~g----~~v~~-p~~~~~~~i~~~---i~~~~------~~g~~~~~~~~l~~~~~  181 (229)
T TIGR00035       117 VKKAGLLGTKGTMKDGV-YEREMKKHG----IEIVT-PDKEEQEAIMSG---IYDEV------KAGNIELGRELLLKIAK  181 (229)
T ss_pred             CCEEEEEecHHHHHhHH-HHHHHHHCC----CEEEC-CCHHHHHHHHHH---HHHHH------hcCCcHHHHHHHHHHHH
Confidence            57999997777776644 555544332    22332 222221111110   00000      01111344556777778


Q ss_pred             HHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      .|.+.|||.|++.|--...+.+  ++..++|+|+-.+.+++++.+.
T Consensus       182 ~l~~~gad~iILgCTelpll~~--~~~~~~pviD~~~~~a~~~v~~  225 (229)
T TIGR00035       182 ELEERGAEGIILGCTELSLILK--ADDLDVPLIDPMDVIAEAAVKL  225 (229)
T ss_pred             HHHhCCCCEEEEeCcchHhhcc--cccCCCCeEchHHHHHHHHHHH
Confidence            8888999999999986666655  4556899999999999888764

>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.27  E-value=0.1  Score=46.43  Aligned_cols=84  Identities=20%  Similarity=0.220  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEeCCchhhh---------HHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEE
Q 026201          149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIW---------HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIG  219 (241)
Q Consensus       149 ~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~---------~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVG  219 (241)
                      ++..+..+++..|.++|+|+|+-.|-++..+         .+.+++..++|++--.-++++.++..+.+        ||.
T Consensus        51 ~M~~~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~~v~vvTts~Avv~aL~al~a~--------ri~  122 (238)
T COG3473          51 KMESYTERAALELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAKGVPVVTTSTAVVEALNALGAQ--------RIS  122 (238)
T ss_pred             HHHHHHHHHHHhcCccccCEEEEeccceeeecCCchhHHHHHHHHhccCCceeechHHHHHHHHhhCcc--------eEE
Confidence            3445566777889999999999999999864         24577778999999999999999998876        885


Q ss_pred             EEecHHHHhh-hhHHHHHHhcCC
Q 026201          220 VLAKNAILTA-GFYQEKLQHEDC  241 (241)
Q Consensus       220 LLaT~~T~~s-~~Y~~~L~~~G~  241 (241)
                       +.|+++.+. +.-.+.|+++||
T Consensus       123 -vlTPY~~evn~~e~ef~~~~Gf  144 (238)
T COG3473         123 -VLTPYIDEVNQREIEFLEANGF  144 (238)
T ss_pred             -EeccchhhhhhHHHHHHHhCCe
Confidence             557888764 345566777776

>TIGR00067 glut_race glutamate racemase

Probab=95.24  E-value=0.22  Score=44.74  Aligned_cols=58  Identities=16%  Similarity=0.124  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHHh
Q 026201          148 SLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA  205 (241)
Q Consensus       148 ~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~~  205 (241)
                      +...+.+.+.++.|.+.|+|.+|+.|-=.....+++++.+  ++++|+-.+.+++++.+.
T Consensus       155 ~~~~~~l~~~l~~l~~~~~d~lILGCTh~P~l~~~i~~~~~~~v~~IDp~~~la~~~~~~  214 (251)
T TIGR00067       155 DYALECLKRYLRPLLDTLPDTVVLGCTHFPLLKEEIEQYLPEHVRLVDSGVHTARRTAWL  214 (251)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEECcCChHHHHHHHHHHcCCCcEEECCHHHHHHHHHHH
Confidence            3455567777778888899999999985555568888764  478999999998887763

The most closely related proteins differing in function are aspartate racemases.

>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase

Probab=94.58  E-value=0.13  Score=43.75  Aligned_cols=53  Identities=17%  Similarity=0.255  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHH-HHhCCcEEEEeCCchhh---hHHHHhccCCCCeeeccHHHHHHH
Q 026201          150 IVENLRRKRVFL-EKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHVSECVAKEL  202 (241)
Q Consensus       150 i~~~l~~~~~~L-e~~Gad~IvIaCNTAH~---~~d~l~~~~~vPil~Iid~t~~~i  202 (241)
                      ..+.+.+.++.| ++.|+|.|++.|.-.+.   +.+.+.+..++|+++-.+.+++++
T Consensus       159 ~~~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~~~~~~~~~  215 (216)
T PF01177_consen  159 QIEILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDSNQAAAWAA  215 (216)
T ss_dssp             HHHHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEccHHHHHHHh
Confidence            455566677777 59999999999999994   467888888999999888887764

Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....

>TIGR02990 ectoine_eutA ectoine utilization protein EutA

Probab=94.52  E-value=0.19  Score=45.10  Aligned_cols=79  Identities=10%  Similarity=0.152  Sum_probs=56.3

Q ss_pred             HHHHHHHH-HHhCCcEEEEeCCchhhhH------HHHhc-cCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH
Q 026201          154 LRRKRVFL-EKAGARCIVMPCHLSHIWH------DEVCK-GCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA  225 (241)
Q Consensus       154 l~~~~~~L-e~~Gad~IvIaCNTAH~~~------d~l~~-~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~  225 (241)
                      +.+.+..| ..+++|+|+.+|-..+.+.      +++++ ..++|++.-..++.+++++.|.|        ||+|+ |++
T Consensus        59 l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~--------RIalv-TPY  129 (239)
T TIGR02990        59 LTEAAALILPDEELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVR--------RISLL-TPY  129 (239)
T ss_pred             HHHHHHHhcCCCCCCEEEEccchhheecCHHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCC--------EEEEE-CCC
Confidence            33343344 4589999999999988743      44554 35799999999999999999887        99876 455


Q ss_pred             HHh-hhhHHHHHHhcCC
Q 026201          226 ILT-AGFYQEKLQHEDC  241 (241)
Q Consensus       226 T~~-s~~Y~~~L~~~G~  241 (241)
                      +-. +....+.|++.||
T Consensus       130 ~~~v~~~~~~~l~~~G~  146 (239)
T TIGR02990       130 TPETSRPMAQYFAVRGF  146 (239)
T ss_pred             cHHHHHHHHHHHHhCCc
Confidence            544 2334555677675

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=93.93  E-value=0.14  Score=46.81  Aligned_cols=42  Identities=21%  Similarity=0.425  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201          152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV  194 (241)
Q Consensus       152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I  194 (241)
                      +.+.+.++.|+++||++|+++|-. .....+|.+.+++|+++|
T Consensus       160 ~~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~l~iP~iGI  201 (263)
T TIGR00222       160 KKLLEDALALEEAGAQLLVLECVP-VELAAKITEALAIPVIGI  201 (263)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHhCCCCEEee
Confidence            345566788999999999999999 578899999999999998

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>TIGR02317 prpB methylisocitrate lyase

Probab=93.92  E-value=0.75  Score=42.40  Aligned_cols=105  Identities=22%  Similarity=0.228  Sum_probs=71.5

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      .|+-|-.+|-.-..+.++.+||.....+.+.++++|.-..+.           +         .....++.   +.+ ++
T Consensus       113 pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa-----------~---------~~~g~deA---I~R-a~  168 (285)
T TIGR02317       113 PKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDA-----------R---------AVEGLDAA---IER-AK  168 (285)
T ss_pred             ccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCc-----------c---------cccCHHHH---HHH-HH
Confidence            466677777666688899999988887653466777542211           0         01122222   332 35


Q ss_pred             HHHHhCCcEEEEeCCchhhhHHHHhccCCCCee-eccH------HHHHHHHHhcCC
Q 026201          160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK  208 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil-~Iid------~t~~~i~~~~~k  208 (241)
                      ...++|||+|.+++-+.-....++.+.+++|++ +++.      .+.+++.+.|.+
T Consensus       169 ay~~AGAD~vfi~g~~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~  224 (285)
T TIGR02317       169 AYVEAGADMIFPEALTSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYK  224 (285)
T ss_pred             HHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCc
Confidence            567899999999998876677888888889985 5542      368889998875

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=93.72  E-value=0.85  Score=42.29  Aligned_cols=105  Identities=21%  Similarity=0.222  Sum_probs=71.2

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      .|+-|-++|-.-.+..++.+||.....+.+.++++|.-..+.           .         ...+.++   .+.+ ++
T Consensus       117 pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa-----------~---------~~~g~de---aI~R-a~  172 (294)
T TIGR02319       117 PKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDA-----------R---------ESFGLDE---AIRR-SR  172 (294)
T ss_pred             ccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecc-----------c---------ccCCHHH---HHHH-HH
Confidence            567777777666677899999998887663467777553221           0         0112223   2333 34


Q ss_pred             HHHHhCCcEEEEeCCchhhhHHHHhccCCCCe-eeccHH------HHHHHHHhcCC
Q 026201          160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPF-LHVSEC------VAKELKEANMK  208 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPi-l~Iid~------t~~~i~~~~~k  208 (241)
                      ...++|||+|.+++-+.-.....+.+.++.|+ ++|+..      +.+++.+.|.+
T Consensus       173 aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~  228 (294)
T TIGR02319       173 EYVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYN  228 (294)
T ss_pred             HHHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCc
Confidence            56789999999998766666778888888885 366642      68889998875

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>COG1609 PurR Transcriptional regulators [Transcription]

Probab=93.64  E-value=1.2  Score=41.26  Aligned_cols=122  Identities=15%  Similarity=0.179  Sum_probs=72.2

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||+|=-   .-+-.||-.+.+.....   ....+++++-.                         .+.+..    .
T Consensus        57 ~s~~Ig~i~p---~~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~-------------------------~~~~~e----~  104 (333)
T COG1609          57 RTKTIGLVVP---DITNPFFAEILKGIEEAAREAGYSLLLANTD-------------------------DDPEKE----R  104 (333)
T ss_pred             CCCEEEEEeC---CCCCchHHHHHHHHHHHHHHcCCEEEEECCC-------------------------CCHHHH----H
Confidence            4678888742   22226777777766643   56667766611                         122222    2


Q ss_pred             HHHHHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSP  215 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~  215 (241)
                      +..+.|.+.++|-|++..-..+. ..+.+.+. ++|++-+-                   ..+++++.+.|.+       
T Consensus       105 ~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~-------  176 (333)
T COG1609         105 EYLETLLQKRVDGLILLGERPNDSLLELLAAA-GIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHR-------  176 (333)
T ss_pred             HHHHHHHHcCCCEEEEecCCCCHHHHHHHHhc-CCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCCCc-------
Confidence            34467889999998888833333 33444443 55554432                   2356777777665       


Q ss_pred             CEEEEEecHH---HHh--hhhHHHHHHhcCC
Q 026201          216 LRIGVLAKNA---ILT--AGFYQEKLQHEDC  241 (241)
Q Consensus       216 ~rVGLLaT~~---T~~--s~~Y~~~L~~~G~  241 (241)
                       +||+++.+.   +..  -.=|.+.++++|+
T Consensus       177 -~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~  206 (333)
T COG1609         177 -RIAFIGGPLDSSASRERLEGYRAALREAGL  206 (333)
T ss_pred             -eEEEEeCCCccccHhHHHHHHHHHHHHCCC
Confidence             999999872   222  2337788877764

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=93.45  E-value=0.18  Score=45.71  Aligned_cols=43  Identities=28%  Similarity=0.451  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201          152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS  195 (241)
Q Consensus       152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii  195 (241)
                      +.+.+.++.++++|||.|+++|-.. ....+|.+.+++|+|+|.
T Consensus       158 ~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v~iP~igiG  200 (254)
T cd06557         158 ERLLEDALALEEAGAFALVLECVPA-ELAKEITEALSIPTIGIG  200 (254)
T ss_pred             HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCCCCEEEec
Confidence            4455667889999999999999975 688999999999999984

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]

Probab=93.40  E-value=0.35  Score=44.90  Aligned_cols=56  Identities=34%  Similarity=0.540  Sum_probs=44.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhc--------cCCCCeeeccHHHH
Q 026201          144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCK--------GCSVPFLHVSECVA  199 (241)
Q Consensus       144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~--------~~~vPil~Iid~t~  199 (241)
                      ..+....++......+.+.++|||+||-||.+=|.++|+-|.        ..++|++|.-..++
T Consensus       201 ~~~~~~sl~~~~~kL~~~ke~gad~ivt~Cp~Chlq~D~~q~~i~~~~g~~~~~pv~~~~Qll~  264 (293)
T COG2048         201 SLNLSVSLKLAKRKLQSAKEAGADCIVTPCPLCHLQLDRGQPEIKKKFGIDYDIPVLHLSQLLG  264 (293)
T ss_pred             cccHHHHHHHHHHHHHHHHhcCCCEEEecCccceeehhhccHHHHHhcCCCCCCceeeHHHHHH
Confidence            445567788888888999999999999999999999876433        35789999866544

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=93.29  E-value=0.2  Score=47.19  Aligned_cols=43  Identities=14%  Similarity=0.305  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201          151 VENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV  194 (241)
Q Consensus       151 ~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I  194 (241)
                      .+.+.+.++.|+++||+.|+++|-... ...+|.+.++||.|+|
T Consensus       181 a~~li~dA~ale~AGAf~ivLE~Vp~~-la~~It~~l~IPtIGI  223 (332)
T PLN02424        181 AVKVVETALALQEAGCFAVVLECVPAP-VAAAITSALQIPTIGI  223 (332)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHHhCCCCEEee
Confidence            344666778899999999999999888 8899999999999998

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=93.06  E-value=0.22  Score=45.37  Aligned_cols=42  Identities=29%  Similarity=0.435  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201          152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV  194 (241)
Q Consensus       152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I  194 (241)
                      +.+.+.++.++++|||.|++.|-.. ....+|.+.+++|.|+|
T Consensus       161 ~~~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l~iP~igi  202 (264)
T PRK00311        161 EKLLEDAKALEEAGAFALVLECVPA-ELAKEITEALSIPTIGI  202 (264)
T ss_pred             HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCCCCEEEe
Confidence            3455667889999999999999966 68899999999999998

>PRK10481 hypothetical protein; Provisional

Probab=93.03  E-value=0.22  Score=44.46  Aligned_cols=51  Identities=31%  Similarity=0.280  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHH
Q 026201          154 LRRKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKE  204 (241)
Q Consensus       154 l~~~~~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~  204 (241)
                      +.+.++.|...|||+|++.|-..+. ..+.+++.+++|+|.....+++-+.+
T Consensus       171 l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~ar~~~e  222 (224)
T PRK10481        171 LIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVARLAAE  222 (224)
T ss_pred             HHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHHHHHHH
Confidence            5556778889999999999998885 45899999999999987777655544

>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]

Probab=92.45  E-value=0.56  Score=43.02  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             hccCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           77 LNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        77 ~~~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      ..+.+.|||||=-|..-. .||+.+.+....+-....+-  .|.           +.+..    +......+...+.+++
T Consensus       107 ~t~~~~IgViaT~~Tvks-~~y~~~i~~~~~~~~V~~la--~p~-----------lV~lv----E~g~~~~~~~~~~l~~  168 (269)
T COG0796         107 LTRNGRIGVIATPATVKS-NAYRDLIARFAPDCEVESLA--CPE-----------LVPLV----EEGIRGGPVALEVLKE  168 (269)
T ss_pred             hccCCeEEEEeccchhcc-HHHHHHHHHhCCCCEEEEec--Ccc-----------hHHHH----hcccccCHHHHHHHHH
Confidence            345668999965454443 56666666555541111111  122           11111    1112222344556667


Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhH--HHHhccCC--CCeeeccHHHHHHHHHh
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWH--DEVCKGCS--VPFLHVSECVAKELKEA  205 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~--d~l~~~~~--vPil~Iid~t~~~i~~~  205 (241)
                      ....|...|+|.+|+.|-  |+-+  +.|++..+  +++++=.+++++.+.+.
T Consensus       169 ~l~~~~~~~~DtlVLGCT--HyPll~~~i~~~~~~~v~lids~~~~a~~~~~~  219 (269)
T COG0796         169 YLPPLQEAGPDTLVLGCT--HYPLLKPEIQQVLGEHVALIDSGAETARRLARL  219 (269)
T ss_pred             HhcchhccCCCEEEEeCc--CcHHHHHHHHHHhCCCceEeCCHHHHHHHHHHH
Confidence            778899999999999997  7643  88888765  89998777788777663

>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation

Probab=92.34  E-value=4.9  Score=34.20  Aligned_cols=73  Identities=14%  Similarity=0.105  Sum_probs=40.9

Q ss_pred             HHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCEE
Q 026201          159 VFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRI  218 (241)
Q Consensus       159 ~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~rV  218 (241)
                      +.|...++|.|++. ++......+.+++ .++|+|-+                   ...+++.+.+.|.        ++|
T Consensus        49 ~~l~~~~vdgiii~~~~~~~~~~~~l~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~~i  119 (268)
T cd06298          49 NNLLAKQVDGIIFMGGKISEEHREEFKR-SPTPVVLAGSVDEDNELPSVNIDYKKAAFEATELLIKNGH--------KKI  119 (268)
T ss_pred             HHHHHhcCCEEEEeCCCCcHHHHHHHhc-CCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHcCC--------ceE
Confidence            45667899988874 5444445555543 24554433                   2234455555443        399


Q ss_pred             EEEecHHH------HhhhhHHHHHHhcC
Q 026201          219 GVLAKNAI------LTAGFYQEKLQHED  240 (241)
Q Consensus       219 GLLaT~~T------~~s~~Y~~~L~~~G  240 (241)
                      ++++....      .+..-|++.++++|
T Consensus       120 ~~l~~~~~~~~~~~~r~~gf~~~~~~~~  147 (268)
T cd06298         120 AFISGPLEDSINGDERLAGYKEALSEAN  147 (268)
T ss_pred             EEEeCCcccccchhHHHHHHHHHHHHcC
Confidence            99974322      11233677777665

Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.

>PRK11303 DNA-binding transcriptional regulator FruR; Provisional

Probab=91.47  E-value=4.6  Score=35.96  Aligned_cols=76  Identities=12%  Similarity=0.155  Sum_probs=44.7

Q ss_pred             HHHHHHHhCCcEEEEe-CCc-hhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCC
Q 026201          157 KRVFLEKAGARCIVMP-CHL-SHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSP  215 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIa-CNT-AH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~  215 (241)
                      .++.|...++|.|++. ++. ....++++.+ .++|++-+-                   ..+++++.+.|.+       
T Consensus       109 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~v~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~r-------  180 (328)
T PRK11303        109 CAEHLLQRQVDALIVSTSLPPEHPFYQRLQN-DGLPIIALDRALDREHFTSVVSDDQDDAEMLAESLLKFPAE-------  180 (328)
T ss_pred             HHHHHHHcCCCEEEEcCCCCCChHHHHHHHh-cCCCEEEECCCCCCCCCCEEEeCCHHHHHHHHHHHHHCCCC-------
Confidence            3456778899988874 332 2344555543 356655431                   2345566666654       


Q ss_pred             CEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          216 LRIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       216 ~rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                       +|++++...     ..+..-|.+.++++|+
T Consensus       181 -~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~  210 (328)
T PRK11303        181 -SILLLGALPELSVSFEREQGFRQALKDDPR  210 (328)
T ss_pred             -eEEEEeCccccccHHHHHHHHHHHHHHcCC
Confidence             999997542     2233447888887763

>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=91.44  E-value=2.9  Score=35.81  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=39.8

Q ss_pred             HHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++ +++.... ..++. ..++|+|.+-                   ..+++.+.+.|.+        +
T Consensus        48 i~~l~~~~~dgiii~~~~~~~~-~~~~~-~~~iPvV~~~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~g~~--------~  117 (263)
T cd06280          48 LELMEEERVTGVIFAPTRATLR-RLAEL-RLSFPVVLIDRAGPAGRVDAVVLDNRAAARTLVEHLVAQGYR--------R  117 (263)
T ss_pred             HHHHHhCCCCEEEEeCCCCCch-HHHHH-hcCCCEEEECCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc--------e
Confidence            35677889996666 5443322 22222 3356665441                   2345566666544        8


Q ss_pred             EEEEecHHH----HhhhhHHHHHHhcC
Q 026201          218 IGVLAKNAI----LTAGFYQEKLQHED  240 (241)
Q Consensus       218 VGLLaT~~T----~~s~~Y~~~L~~~G  240 (241)
                      |++++++..    .+..-|++.++++|
T Consensus       118 i~~~~~~~~~~~~~R~~gf~~~~~~~~  144 (263)
T cd06280         118 IGGLFGNASTTGAERRAGYEDAMRRHG  144 (263)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence            998865421    22233677776665

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins

Probab=91.39  E-value=0.56  Score=41.85  Aligned_cols=51  Identities=27%  Similarity=0.210  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhCCcEEEEeCCchhhhH-HHHhccCCCCeeeccHHHHHHHHH
Q 026201          154 LRRKRVFLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECVAKELKE  204 (241)
Q Consensus       154 l~~~~~~Le~~Gad~IvIaCNTAH~~~-d~l~~~~~vPil~Iid~t~~~i~~  204 (241)
                      +.++++.|..+|||+||+=|-..|... +.+++.+++|+|---..+++.+.+
T Consensus       167 l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~lvAr~~~E  218 (221)
T PF07302_consen  167 LAAAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTLVARLAAE  218 (221)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHHHHHHHHH
Confidence            456778899999999999999999997 778889999998744444444433

In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=91.37  E-value=2.9  Score=38.68  Aligned_cols=105  Identities=16%  Similarity=0.176  Sum_probs=69.8

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      .|+-|-.+|-.-....++.+||.....+....+++|.-..+.           +         .....++.   +.+ ++
T Consensus       118 pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa-----------~---------~~~g~deA---I~R-a~  173 (292)
T PRK11320        118 AKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDA-----------L---------AVEGLDAA---IER-AQ  173 (292)
T ss_pred             ccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCc-----------c---------cccCHHHH---HHH-HH
Confidence            466677766666677899999988877654466776442211           0         01123333   333 34


Q ss_pred             HHHHhCCcEEEEeCCchhhhHHHHhccCCCCee-eccH------HHHHHHHHhcCC
Q 026201          160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK  208 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil-~Iid------~t~~~i~~~~~k  208 (241)
                      ...++|||+|.+++-+.--.+.++.+.+++|++ +++.      ...+++.+.|.+
T Consensus       174 aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~  229 (292)
T PRK11320        174 AYVEAGADMIFPEAMTELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVA  229 (292)
T ss_pred             HHHHcCCCEEEecCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCc
Confidence            567899999999998766667778888889974 4442      258889998875

>PRK10423 transcriptional repressor RbsR; Provisional

Probab=91.33  E-value=4.3  Score=36.06  Aligned_cols=76  Identities=13%  Similarity=0.147  Sum_probs=41.5

Q ss_pred             HHHHHHhCCcEEEEeC-CchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMPC-HLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaC-NTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++.+ +..-...+.+....++|++-+                   ...+++++.+.|.+        +
T Consensus       105 ~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i~~~~~~~~~~~v~~d~~~~~~~a~~~L~~~G~~--------~  176 (327)
T PRK10423        105 LETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGYT--------R  176 (327)
T ss_pred             HHHHHHcCCCEEEEeCCCcchhhHHHHHhcCCCCEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHcCCC--------e
Confidence            3457788999777754 322222333433235665433                   12334555555544        9


Q ss_pred             EEEEecHHH-----HhhhhHHHHHHhcCC
Q 026201          218 IGVLAKNAI-----LTAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~T-----~~s~~Y~~~L~~~G~  241 (241)
                      |++++.+..     .+..-|.+.++++|+
T Consensus       177 I~~i~~~~~~~~~~~R~~Gf~~al~~~~~  205 (327)
T PRK10423        177 IACITGPLDKTPARLRLEGYRAAMKRAGL  205 (327)
T ss_pred             EEEEeCCccccchHHHHHHHHHHHHHcCC
Confidence            999965321     223347777877663

>PRK10014 DNA-binding transcriptional repressor MalI; Provisional

Probab=91.30  E-value=5.2  Score=35.86  Aligned_cols=75  Identities=15%  Similarity=0.139  Sum_probs=41.9

Q ss_pred             HHHHHHhCCcEEEEeCCchh--hhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLSH--IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH--~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      ++.|...++|.|++.-.+..  ...+.+++ .++|++-+                   ...+++++.+.|.+        
T Consensus       113 ~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------  183 (342)
T PRK10014        113 FSTLLNQGVDGVVIAGAAGSSDDLREMAEE-KGIPVVFASRASYLDDVDTVRPDNMQAAQLLTEHLIRNGHQ--------  183 (342)
T ss_pred             HHHHHhCCCCEEEEeCCCCCcHHHHHHHhh-cCCCEEEEecCCCCCCCCEEEeCCHHHHHHHHHHHHHCCCC--------
Confidence            34577788997777533322  23344443 35555432                   12345566666544        


Q ss_pred             EEEEEecHHHH-----hhhhHHHHHHhcCC
Q 026201          217 RIGVLAKNAIL-----TAGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~~T~-----~s~~Y~~~L~~~G~  241 (241)
                      +|++++.+.+.     +..=|.+.++++|+
T Consensus       184 ~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~  213 (342)
T PRK10014        184 RIAWLGGQSSSLTRAERVGGYCATLLKFGL  213 (342)
T ss_pred             EEEEEcCCcccccHHHHHHHHHHHHHHcCC
Confidence            99999754321     22337888877763

>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor

Probab=91.04  E-value=5.4  Score=35.61  Aligned_cols=75  Identities=7%  Similarity=0.068  Sum_probs=42.2

Q ss_pred             HHHHHHhCCcEEEEeC-Cc-hhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCC
Q 026201          158 RVFLEKAGARCIVMPC-HL-SHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaC-NT-AH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~  216 (241)
                      ++.|...++|.|++.. .. ....+..+++ .++|++-+-                   ..+++++.+.|.+        
T Consensus       109 ~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~dn~~~~~~~~~~L~~~G~~--------  179 (327)
T TIGR02417       109 IENLLARQVDALIVASCMPPEDAYYQKLQN-EGLPVVALDRSLDDEHFCSVISDDVDAAAELIERLLSQHAD--------  179 (327)
T ss_pred             HHHHHHcCCCEEEEeCCCCCChHHHHHHHh-cCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCC--------
Confidence            3567788999877643 32 2334455543 356655331                   1234556555544        


Q ss_pred             EEEEEecHHH-----HhhhhHHHHHHhcCC
Q 026201          217 RIGVLAKNAI-----LTAGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~~T-----~~s~~Y~~~L~~~G~  241 (241)
                      +|++++....     .+..=|++.++++|+
T Consensus       180 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~  209 (327)
T TIGR02417       180 EFWYLGAQPELSVSRDRLAGFRQALKQATL  209 (327)
T ss_pred             eEEEEeCcccchhHHHHHHHHHHHHHHcCC
Confidence            9999974332     223347778877663

Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.

>PRK07475 hypothetical protein; Provisional

Probab=91.02  E-value=0.74  Score=41.13  Aligned_cols=54  Identities=11%  Similarity=0.224  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHHHHHH--hCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHH
Q 026201          146 DDSLIVENLRRKRVFLEK--AGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVA  199 (241)
Q Consensus       146 d~~~i~~~l~~~~~~Le~--~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~  199 (241)
                      +-++..+.+.+.++.|.+  .|+|.|++.|--.-.+.+.+++.+++|+++....+.
T Consensus       175 d~~~~~~~l~~~~~~l~~~~~~~daIvL~CTeLp~~~~~le~~~glPViDs~t~~~  230 (245)
T PRK07475        175 DNEAAEQEVVAAARALLERHPDIGAIVLECTNMPPYAAAIQRATGLPVFDIVTLIN  230 (245)
T ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCEEEEcCcChHHHHHHHHHhcCCCEEeHHHHHH
Confidence            444555667777788874  499999999998888889999989999999866553

>PRK14987 gluconate operon transcriptional regulator; Provisional

Probab=90.77  E-value=6.2  Score=35.31  Aligned_cols=75  Identities=5%  Similarity=0.031  Sum_probs=42.3

Q ss_pred             HHHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++. +.......+.+. ..++|++-+.                   ..+++++.+.|.+        +
T Consensus       112 ~~~~~~~~vdgiI~~~~~~~~~~~~~l~-~~~iPvV~~~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~Gh~--------~  182 (331)
T PRK14987        112 LESMLSWNIDGLILTERTHTPRTLKMIE-VAGIPVVELMDSQSPCLDIAVGFDNFEAARQMTTAIIARGHR--------H  182 (331)
T ss_pred             HHHHHhcCCCEEEEcCCCCCHHHHHHHH-hCCCCEEEEecCCCCCCCceEEeCcHHHHHHHHHHHHHCCCc--------e
Confidence            345678899988874 322222334443 2466766431                   2345556666554        9


Q ss_pred             EEEEecHHH----HhhhhHHHHHHhcCC
Q 026201          218 IGVLAKNAI----LTAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~T----~~s~~Y~~~L~~~G~  241 (241)
                      ||+++.+..    .+..=|++.++++|+
T Consensus       183 I~~i~~~~~~~~~~R~~Gf~~al~~~g~  210 (331)
T PRK14987        183 IAYLGARLDERTIIKQKGYEQAMLDAGL  210 (331)
T ss_pred             EEEEcCCCcccHHHHHHHHHHHHHHcCC
Confidence            999975421    122337778877763

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=90.62  E-value=2.3  Score=32.72  Aligned_cols=74  Identities=16%  Similarity=0.212  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhCCcEEEEeCCchhh---hHHHHhccCCC-----CeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH
Q 026201          154 LRRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSV-----PFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA  225 (241)
Q Consensus       154 l~~~~~~Le~~Gad~IvIaCNTAH~---~~d~l~~~~~v-----Pil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~  225 (241)
                      ..+.+++|++.|..++++.=|+...   +.+.+++ .++     -|+.-...+++.+++..       ..++|.++|+++
T Consensus        19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~-~Gi~~~~~~i~ts~~~~~~~l~~~~-------~~~~v~vlG~~~   90 (101)
T PF13344_consen   19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKK-LGIPVDEDEIITSGMAAAEYLKEHK-------GGKKVYVLGSDG   90 (101)
T ss_dssp             HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHH-TTTT--GGGEEEHHHHHHHHHHHHT-------TSSEEEEES-HH
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHh-cCcCCCcCEEEChHHHHHHHHHhcC-------CCCEEEEEcCHH
Confidence            3456678999998888888776555   3466643 343     36777788999999841       234999999986


Q ss_pred             HHhhhhHHHHHHhcCC
Q 026201          226 ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       226 T~~s~~Y~~~L~~~G~  241 (241)
                            .++.|++.||
T Consensus        91 ------l~~~l~~~G~  100 (101)
T PF13344_consen   91 ------LREELREAGF  100 (101)
T ss_dssp             ------HHHHHHHTTE
T ss_pred             ------HHHHHHHcCC
Confidence                  3456666664

...

>COG4126 Hydantoin racemase [Amino acid transport and metabolism]

Probab=90.54  E-value=0.56  Score=41.98  Aligned_cols=48  Identities=21%  Similarity=0.248  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHH
Q 026201          155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL  202 (241)
Q Consensus       155 ~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i  202 (241)
                      .++.+.++.-|||.|++-|--+....++|++.++||+++=+-+.++.+
T Consensus       164 ~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVIDgv~Aav~~a  211 (230)
T COG4126         164 IEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVIDGVAAAVKLA  211 (230)
T ss_pred             HHHHHHhhhcCCCEEEEcCccHHHHHHHHHHHhCCCcccchHHHHHHH
Confidence            445577889999999999999999999999999999999776665543

>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators

Probab=90.19  E-value=7.9  Score=33.00  Aligned_cols=74  Identities=16%  Similarity=0.146  Sum_probs=42.1

Q ss_pred             HHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|.+.++|.|++ +++..-...+.+++ .++|++-+-                   ..+++.+.+.|.+        +
T Consensus        48 ~~~l~~~~vdgiii~~~~~~~~~~~~l~~-~~iPvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------~  118 (268)
T cd06273          48 ARKLLERGVDGLALIGLDHSPALLDLLAR-RGVPYVATWNYSPDSPYPCVGFDNREAGRLAARHLIALGHR--------R  118 (268)
T ss_pred             HHHHHhcCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------e
Confidence            34577789997776 44433233444433 356665541                   2345556655544        9


Q ss_pred             EEEEecH------HHHhhhhHHHHHHhcC
Q 026201          218 IGVLAKN------AILTAGFYQEKLQHED  240 (241)
Q Consensus       218 VGLLaT~------~T~~s~~Y~~~L~~~G  240 (241)
                      |++++.+      ...+..-|++.++++|
T Consensus       119 i~~i~~~~~~~~~~~~r~~gf~~~l~~~~  147 (268)
T cd06273         119 IAMIFGPTQGNDRARARRAGVRAALAEAG  147 (268)
T ss_pred             EEEEeccccCCccHHHHHHHHHHHHHHcC
Confidence            9999632      2233344777777765

This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational

>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species

Probab=89.97  E-value=4.5  Score=34.44  Aligned_cols=74  Identities=11%  Similarity=0.046  Sum_probs=41.8

Q ss_pred             HHHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCee-------------ec-----cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFL-------------HV-----SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       157 ~~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil-------------~I-----id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      .++.|.+.++|.|++ +|+.....++.+++..  |++             +.     ...+++.+.+.|.+        +
T Consensus        47 ~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~--pvv~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------~  116 (260)
T cd06286          47 YLELLKTKQVDGLILCSRENDWEVIEPYTKYG--PIVLCEEYDSKNISSVYIDHYEAFYEALKYLIQKGYR--------K  116 (260)
T ss_pred             HHHHHHHcCCCEEEEeCCCCCHHHHHHHhcCC--CEEEEecccCCCCCEEEECChHHHHHHHHHHHHCCCc--------e
Confidence            345677889997776 4543333455555432  433             21     22455666666544        9


Q ss_pred             EEEEecHHH-----HhhhhHHHHHHhcC
Q 026201          218 IGVLAKNAI-----LTAGFYQEKLQHED  240 (241)
Q Consensus       218 VGLLaT~~T-----~~s~~Y~~~L~~~G  240 (241)
                      |++++.+..     .+..=|++.++++|
T Consensus       117 i~~i~~~~~~~~~~~R~~Gf~~~l~~~~  144 (260)
T cd06286         117 IAYCIGRKKSLNSQSRKKAYKDALEEYG  144 (260)
T ss_pred             EEEEcCCcccchhHHHHHHHHHHHHHcC
Confidence            999965421     22334677777665

This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.

>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]

Probab=89.44  E-value=2  Score=38.59  Aligned_cols=110  Identities=15%  Similarity=0.133  Sum_probs=64.5

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      .+++|+||=-+...+ .|||+-.+.    ..+.+|+-.+.+.. .+     +-.-+...+   ...-.+.=.+.+.+.++
T Consensus       117 ~kkvgLLgT~~Tm~~-~fY~~~l~~----~gievvvPdd~~q~-~v-----~~iIy~El~---~G~~~~~sr~~~~~ii~  182 (230)
T COG1794         117 AKKVGLLGTRFTMEQ-GFYRKRLEE----KGIEVVVPDDDEQA-EV-----NRIIYEELC---QGIVKDASRELYLAVIE  182 (230)
T ss_pred             CceeEEeeccchHHh-HHHHHHHHH----CCceEecCCHHHHH-HH-----HHHHHHHHh---cccchHHHHHHHHHHHH
Confidence            789999976666654 566654432    23555553322110 00     000000000   11112233455667778


Q ss_pred             HHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      .|++.|||+|++.|--....+++-  .+++|+++-....++++.+.
T Consensus       183 ~l~~~Gae~vIlGCTEi~lll~~~--d~~vP~~Dtt~iha~aav~~  226 (230)
T COG1794         183 RLAERGAEGVILGCTEIPLLLSQD--DSSVPVFDTTAIHAEAAVEL  226 (230)
T ss_pred             HHHHcCCCEEEEeccchheeecCC--cccCcccccHHHHHHHHHHH
Confidence            999999999999998777766443  37899999877777766553

>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria

Probab=89.23  E-value=11  Score=31.83  Aligned_cols=74  Identities=14%  Similarity=0.161  Sum_probs=39.5

Q ss_pred             HHHHHHhCCcEEEE-eCCch-hhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          158 RVFLEKAGARCIVM-PCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       158 ~~~Le~~Gad~IvI-aCNTA-H~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      ++.|.+.++|.|++ +|+.. ...++++.+ .++|++-+                   ...+++.+.+.|.        +
T Consensus        48 i~~~~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~  118 (268)
T cd06289          48 LSTMLEHGVAGIILCPAAGTSPDLLKRLAE-SGIPVVLVAREVAGAPFDYVGPDNAAGARLATEHLISLGH--------R  118 (268)
T ss_pred             HHHHHHcCCCEEEEeCCCCccHHHHHHHHh-cCCCEEEEeccCCCCCCCEEeecchHHHHHHHHHHHHCCC--------C
Confidence            35577889997766 45432 223444433 35666533                   1233444444443        3


Q ss_pred             EEEEEecHH-----HHhhhhHHHHHHhcC
Q 026201          217 RIGVLAKNA-----ILTAGFYQEKLQHED  240 (241)
Q Consensus       217 rVGLLaT~~-----T~~s~~Y~~~L~~~G  240 (241)
                      +|++++...     ..+..-|.+.+++.|
T Consensus       119 ~i~~l~~~~~~~~~~~r~~gf~~~l~~~~  147 (268)
T cd06289         119 RIAFIGGLEDSSTRRERLAGYRAALAEAG  147 (268)
T ss_pred             CEEEecCCccccchHHHHHHHHHHHHHcC
Confidence            899997532     223344666666655

This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>TIGR01481 ccpA catabolite control protein A

Probab=88.97  E-value=11  Score=33.57  Aligned_cols=121  Identities=17%  Similarity=0.154  Sum_probs=64.4

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      .++||++=.   .-+-.||..+.+...+.   ....+++++..                         .+.+...    +
T Consensus        59 ~~~Igvv~~---~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~-------------------------~~~~~~~----~  106 (329)
T TIGR01481        59 TTTVGVIIP---DISNIYYAELARGIEDIATMYKYNIILSNSD-------------------------EDPEKEV----Q  106 (329)
T ss_pred             CCEEEEEeC---CCCchhHHHHHHHHHHHHHHcCCEEEEEeCC-------------------------CCHHHHH----H
Confidence            468898842   22346888887776543   34555554411                         1111111    2


Q ss_pred             HHHHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          157 KRVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      .++.|...++|.|++. +.......+.+.+ .++|++-+                   +..+++++.+.|.+        
T Consensus       107 ~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------  177 (329)
T TIGR01481       107 VLNTLLSKQVDGIIFMGGTITEKLREEFSR-SPVPVVLAGTVDKENELPSVNIDYKQATKEAVGELIAKGHK--------  177 (329)
T ss_pred             HHHHHHhCCCCEEEEeCCCCChHHHHHHHh-cCCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------
Confidence            2345677899977763 3322233344443 35665533                   12345556666554        


Q ss_pred             EEEEEecHH------HHhhhhHHHHHHhcCC
Q 026201          217 RIGVLAKNA------ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~~------T~~s~~Y~~~L~~~G~  241 (241)
                      +|++++.+.      ..+..-|.+.++++|+
T Consensus       178 ~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~  208 (329)
T TIGR01481       178 SIAFVGGPLSDSINGEDRLEGYKEALNKAGI  208 (329)
T ss_pred             eEEEEecCcccccchHHHHHHHHHHHHHcCC
Confidence            999996322      1223347788887764

Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.

>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids

Probab=88.93  E-value=11  Score=33.24  Aligned_cols=74  Identities=8%  Similarity=0.099  Sum_probs=41.4

Q ss_pred             HHHH-HhCCcEEEEeCCchhh--hHHHHhccCCCCeeeccH------------------------HHHHHHHHhcCCCCC
Q 026201          159 VFLE-KAGARCIVMPCHLSHI--WHDEVCKGCSVPFLHVSE------------------------CVAKELKEANMKPLE  211 (241)
Q Consensus       159 ~~Le-~~Gad~IvIaCNTAH~--~~d~l~~~~~vPil~Iid------------------------~t~~~i~~~~~k~~~  211 (241)
                      +.|. +.+++.|+.+..+...  ..+.+ +..++|+|.+..                        ..++.+.+.+.+   
T Consensus        59 ~~li~~~~v~~vig~~~s~~~~~~~~~~-~~~~vP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---  134 (312)
T cd06333          59 RKLIEEDKVDAIIGPSTTPATMAVAPVA-EEAKTPMISLAPAAAIVEPKRKWVFKTPQNDRLMAEAILADMKKRGVK---  134 (312)
T ss_pred             HHHHhhCCeEEEECCCCCHHHHHHHHHH-HhcCCCEEEccCCccccCCCCCcEEEcCCCcHHHHHHHHHHHHHcCCC---
Confidence            3444 4599999987765432  33433 344666665321                        123444454444   


Q ss_pred             CCCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201          212 AGSPLRIGVLAKNAIL---TAGFYQEKLQHEDC  241 (241)
Q Consensus       212 ~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~  241 (241)
                           ||++++.+...   ...-|++.+++.|+
T Consensus       135 -----~vail~~~~~~~~~~~~~~~~~~~~~G~  162 (312)
T cd06333         135 -----TVAFIGFSDAYGESGLKELKALAPKYGI  162 (312)
T ss_pred             -----EEEEEecCcHHHHHHHHHHHHHHHHcCC
Confidence                 99999865432   22346666766653

This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.

>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins

Probab=88.54  E-value=17  Score=32.25  Aligned_cols=74  Identities=12%  Similarity=0.056  Sum_probs=40.4

Q ss_pred             HHHHHHh-CCcEEEEeCCchh--hhHHHHhccCCCCeeecc-------------------------HHHHHHHHHhcCCC
Q 026201          158 RVFLEKA-GARCIVMPCHLSH--IWHDEVCKGCSVPFLHVS-------------------------ECVAKELKEANMKP  209 (241)
Q Consensus       158 ~~~Le~~-Gad~IvIaCNTAH--~~~d~l~~~~~vPil~Ii-------------------------d~t~~~i~~~~~k~  209 (241)
                      ++.|... +++.|+.+.-+..  ...+.+ +..++|+|...                         ...++.+.+.+.+ 
T Consensus        60 ~~~l~~~~~v~avig~~~s~~~~~~~~~~-~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-  137 (336)
T cd06326          60 TRKLIEDDKVFALFGYVGTPTTAAALPLL-EEAGVPLVGPFTGASSLRDPPDRNVFNVRASYADEIAAIVRHLVTLGLK-  137 (336)
T ss_pred             HHHHHhhcCcEEEEeCCCchhHHHHHHHH-HHcCCeEEEecCCcHHhcCCCCCceEEeCCChHHHHHHHHHHHHHhCCc-
Confidence            3456664 9999988754432  223333 34466666531                         1234445555443 


Q ss_pred             CCCCCCCEEEEEecHHH---HhhhhHHHHHHhcC
Q 026201          210 LEAGSPLRIGVLAKNAI---LTAGFYQEKLQHED  240 (241)
Q Consensus       210 ~~~~~~~rVGLLaT~~T---~~s~~Y~~~L~~~G  240 (241)
                             ||+++..+..   -...-|++.+++.|
T Consensus       138 -------~v~~l~~~~~~~~~~~~~~~~~~~~~G  164 (336)
T cd06326         138 -------RIAVFYQDDAFGKDGLAGVEKALAARG  164 (336)
T ss_pred             -------eEEEEEecCcchHHHHHHHHHHHHHcC
Confidence                   9999976532   22344667776665

The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.

>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators

Probab=88.49  E-value=7.9  Score=32.83  Aligned_cols=75  Identities=12%  Similarity=0.152  Sum_probs=41.0

Q ss_pred             HHHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       157 ~~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      .++.|...++|.|++ +++..-...+.+.+ .++|++-+                   ...+++.+.+.|.+        
T Consensus        47 ~~~~l~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------  117 (268)
T cd01575          47 LLRTLLSRRPAGLILTGLEHTERTRQLLRA-AGIPVVEIMDLPPDPIDMAVGFSHAEAGRAMARHLLARGYR--------  117 (268)
T ss_pred             HHHHHHHcCCCEEEEeCCCCCHHHHHHHHh-cCCCEEEEecCCCCCCCCeEEeCcHHHHHHHHHHHHHCCCC--------
Confidence            345677889997766 44422123344332 35565533                   12344455555443        


Q ss_pred             EEEEEecHHH-----HhhhhHHHHHHhcC
Q 026201          217 RIGVLAKNAI-----LTAGFYQEKLQHED  240 (241)
Q Consensus       217 rVGLLaT~~T-----~~s~~Y~~~L~~~G  240 (241)
                      +|++++.+..     .+..-|++.+++.|
T Consensus       118 ~i~~i~~~~~~~~~~~r~~gf~~~l~~~~  146 (268)
T cd01575         118 RIGFLGARMDDTRAQQRLEGFRAALRAAG  146 (268)
T ss_pred             cEEEecCCCCcccHHHHHHHHHHHHHHcC
Confidence            8999986653     22344677777765

This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,

>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=87.58  E-value=13  Score=31.45  Aligned_cols=74  Identities=18%  Similarity=0.167  Sum_probs=38.9

Q ss_pred             HHHHHHhCCcEEEE-eCCchh-hhHHHHhccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVM-PCHLSH-IWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvI-aCNTAH-~~~d~l~~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++ +++... ..++.+++ .++|+|-+                  +...++.+.+.|.+        +
T Consensus        48 ~~~l~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~--------~  118 (266)
T cd06282          48 VETLLRQRVDGLILTVADAATSPALDLLDA-ERVPYVLAYNDPQPGRPSVSVDNRAAARDVAQALAALGHR--------R  118 (266)
T ss_pred             HHHHHhcCCCEEEEecCCCCchHHHHHHhh-CCCCEEEEeccCCCCCCEEeeCcHHHHHHHHHHHHHcCcc--------c
Confidence            34566778888887 454321 23444433 24554322                  22344555555443        8


Q ss_pred             EEEEecH------HHHhhhhHHHHHHhcC
Q 026201          218 IGVLAKN------AILTAGFYQEKLQHED  240 (241)
Q Consensus       218 VGLLaT~------~T~~s~~Y~~~L~~~G  240 (241)
                      |+++..+      ..-+..-|.+.++++|
T Consensus       119 i~~i~~~~~~~~~~~~r~~gf~~~l~~~~  147 (266)
T cd06282         119 IAMLAGRLAASDRARQRYAGYRAAMRAAG  147 (266)
T ss_pred             EEEeccccccCchHHHHHHHHHHHHHHcC
Confidence            9999532      1223344677777765

This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding

>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily

Probab=87.57  E-value=14  Score=31.68  Aligned_cols=76  Identities=16%  Similarity=0.068  Sum_probs=40.8

Q ss_pred             HHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSP  215 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~  215 (241)
                      ++.|...++|.|++.....+   ..++.+++ .++|++-+-                   ..+++++.+..      ...
T Consensus        53 ~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~-~~iPvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~------~g~  125 (272)
T cd06300          53 IRNLIAQGVDAIIINPASPTALNPVIEEACE-AGIPVVSFDGTVTTPCAYNVNEDQAEFGKQGAEWLVKEL------GGK  125 (272)
T ss_pred             HHHHHHcCCCEEEEeCCChhhhHHHHHHHHH-CCCeEEEEecCCCCCceeEecCCHHHHHHHHHHHHHHHc------CCC
Confidence            34566779998888653322   23445443 356655431                   23444555541      023


Q ss_pred             CEEEEEecH-----HHHhhhhHHHHHHhcC
Q 026201          216 LRIGVLAKN-----AILTAGFYQEKLQHED  240 (241)
Q Consensus       216 ~rVGLLaT~-----~T~~s~~Y~~~L~~~G  240 (241)
                      ++|++++..     ...+..-|++.++++|
T Consensus       126 ~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~  155 (272)
T cd06300         126 GNVLVVRGLAGHPVDEDRYAGAKEVLKEYP  155 (272)
T ss_pred             ceEEEEECCCCCcchHHHHHHHHHHHHHCC
Confidence            489999632     2223344777777665

Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.

>PRK10727 DNA-binding transcriptional regulator GalR; Provisional

Probab=87.16  E-value=14  Score=33.32  Aligned_cols=74  Identities=16%  Similarity=0.179  Sum_probs=40.0

Q ss_pred             HHHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCC-ee--------------ec-----cHHHHHHHHHhcCCCCCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVP-FL--------------HV-----SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vP-il--------------~I-----id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      ++.|...++|.|++.... ....++.+.+.  +| ++              .+     ...+++++.+.|.+        
T Consensus       108 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~--~p~vV~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~--------  177 (343)
T PRK10727        108 IEQLIRHRCAALVVHAKMIPDAELASLMKQ--IPGMVLINRILPGFENRCIALDDRYGAWLATRHLIQQGHT--------  177 (343)
T ss_pred             HHHHHhcCCCEEEEecCCCChHHHHHHHhc--CCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc--------
Confidence            345778899988876432 22223444332  33 22              11     11244556665544        


Q ss_pred             EEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          217 RIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      +|++++...     ..+..-|.+.++++|+
T Consensus       178 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi  207 (343)
T PRK10727        178 RIGYLCSNHSISDAEDRLQGYYDALAESGI  207 (343)
T ss_pred             cEEEEeCCccccchHHHHHHHHHHHHHCCC
Confidence            999997532     1223347888887764

>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B

Probab=87.04  E-value=2.1  Score=38.72  Aligned_cols=57  Identities=26%  Similarity=0.453  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHh----c----cCCCCeeeccHHHHHHH
Q 026201          146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVC----K----GCSVPFLHVSECVAKEL  202 (241)
Q Consensus       146 d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~----~----~~~vPil~Iid~t~~~i  202 (241)
                      +.+...+...+.++.+++.|||.||-+|.+-+..++.-+    +    ..++|++|+++-+++++
T Consensus       203 ~~~~s~~l~~~k~~~~~~~gad~ivt~Cp~C~~~l~~~~~~~~~~~g~~~~~~V~h~~elLa~al  267 (290)
T TIGR03288       203 DLDVALDMTKEKLENMKEAGADCIVNVCPFCHLQFDRGQIEIKEKFGEEYNIPVLHYSQLLGLAM  267 (290)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCEEEEeCchHHHHHHHHHHHHHHhcCCCCCcCeeeHHHHHHHHc
Confidence            445555666677888899999999999999998886532    2    24799999999887766

Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=86.69  E-value=10  Score=35.03  Aligned_cols=74  Identities=15%  Similarity=0.167  Sum_probs=45.8

Q ss_pred             HHHHHHHhCCcEEEEeCC---------chhhhHHHHhccCCCCeee---ccHHH-HHHHHHhcCCCCCCCCCCEEEEEec
Q 026201          157 KRVFLEKAGARCIVMPCH---------LSHIWHDEVCKGCSVPFLH---VSECV-AKELKEANMKPLEAGSPLRIGVLAK  223 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCN---------TAH~~~d~l~~~~~vPil~---Iid~t-~~~i~~~~~k~~~~~~~~rVGLLaT  223 (241)
                      .++.++++|||.|++-..         .......++++.+++|++-   |.+.. +.++.+.|..         -..+||
T Consensus       121 ~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~---------gV~iGt  191 (307)
T TIGR03151       121 LAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAE---------AVQMGT  191 (307)
T ss_pred             HHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCC---------Eeecch
Confidence            346788999999998332         1223458888888999884   44332 3344445543         335666


Q ss_pred             HHHH-----hhhhHHHHHHhc
Q 026201          224 NAIL-----TAGFYQEKLQHE  239 (241)
Q Consensus       224 ~~T~-----~s~~Y~~~L~~~  239 (241)
                      ....     .+..|++.|.+.
T Consensus       192 ~f~~t~Es~~~~~~k~~l~~~  212 (307)
T TIGR03151       192 RFLCAKECNVHPNYKEKVLKA  212 (307)
T ss_pred             HHhcccccCCCHHHHHHHHhC
Confidence            5544     356788887543

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators

Probab=86.64  E-value=12  Score=32.26  Aligned_cols=73  Identities=16%  Similarity=0.202  Sum_probs=39.5

Q ss_pred             HHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCEE
Q 026201          159 VFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRI  218 (241)
Q Consensus       159 ~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~rV  218 (241)
                      +.|.+.++|.|++ +|+.....++++.+ .++|++-+                   ...+++++.+.|.        ++|
T Consensus        58 ~~l~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~a~~l~~~g~--------~~i  128 (275)
T cd06295          58 RYLASGRADGVILIGQHDQDPLPERLAE-TGLPFVVWGRPLPGQPYCYVGSDNVGGGRLATEHLLARGR--------RRI  128 (275)
T ss_pred             HHHHhCCCCEEEEeCCCCChHHHHHHHh-CCCCEEEECCccCCCCCCEEEECcHHHHHHHHHHHHHCCC--------CeE
Confidence            4566788997765 56544344555532 34454432                   2234445555443        389


Q ss_pred             EEEecHHH-----HhhhhHHHHHHhcC
Q 026201          219 GVLAKNAI-----LTAGFYQEKLQHED  240 (241)
Q Consensus       219 GLLaT~~T-----~~s~~Y~~~L~~~G  240 (241)
                      ++++.+..     .+..-|.+.+++.|
T Consensus       129 ~~i~~~~~~~~~~~r~~gf~~~~~~~~  155 (275)
T cd06295         129 AFLGGPQDMPEGEERLEGYREALAEAG  155 (275)
T ss_pred             EEEcCCCCcchhHHHHHHHHHHHHHcC
Confidence            99875432     22333677776654

This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang

>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli

Probab=86.35  E-value=20  Score=30.55  Aligned_cols=76  Identities=11%  Similarity=0.098  Sum_probs=40.7

Q ss_pred             HHHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCC
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~  216 (241)
                      .++.|.+.++|.|++........ .+.+.+..++|++-+-                   ..+++.+.+.|.        +
T Consensus        47 ~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ipvV~i~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~G~--------~  118 (269)
T cd06275          47 YLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMDWGPEDDFADKIQDNSEEGGYLATRHLIELGH--------R  118 (269)
T ss_pred             HHHHHHHcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEecccCCCCCCeEeeCcHHHHHHHHHHHHHCCC--------c
Confidence            34567888999887754332332 2444333456655431                   223344555544        3


Q ss_pred             EEEEEecHHH-----HhhhhHHHHHHhcC
Q 026201          217 RIGVLAKNAI-----LTAGFYQEKLQHED  240 (241)
Q Consensus       217 rVGLLaT~~T-----~~s~~Y~~~L~~~G  240 (241)
                      +|++++....     -+..-|.+.++++|
T Consensus       119 ~i~~i~~~~~~~~~~~r~~gf~~~~~~~~  147 (269)
T cd06275         119 RIGCITGPLEKAPAQQRLAGFRRAMAEAG  147 (269)
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHcC
Confidence            9999974321     11223666776655

Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a

>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=86.33  E-value=20  Score=30.59  Aligned_cols=33  Identities=6%  Similarity=0.077  Sum_probs=19.3

Q ss_pred             eEEEEeCCChHH-HHHHHHHHHHHhccC---CCCCEEEec
Q 026201           82 TVGIVGGASVDS-TLNLLGKLVQLSGEE---NDFPFLLCS  117 (241)
Q Consensus        82 ~IGIIGGmGp~A-T~~fy~kI~~~t~~d---~~~~~vi~S  117 (241)
                      +||+|--.   . .-.|+..+.+.....   ....++++.
T Consensus         1 ~i~vi~p~---~~~~~~~~~~~~g~~~~~~~~g~~~~~~~   37 (275)
T cd06317           1 TIGYTQNN---VGSHSYQTTYNKAFQAAAEEDGVEVIVLD   37 (275)
T ss_pred             CeEEEecc---cCCCHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence            46776522   2 346788777776642   455666544

Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK10703 DNA-binding transcriptional repressor PurR; Provisional

Probab=86.04  E-value=25  Score=31.48  Aligned_cols=75  Identities=11%  Similarity=0.115  Sum_probs=39.3

Q ss_pred             HHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          159 VFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      +.|...++|.|++.+.. .-..++.+.+..++|++-+                    ...+++++.+.|.        ++
T Consensus       109 ~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~~d~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~G~--------~~  180 (341)
T PRK10703        109 SMLAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAIIDNAFEGGYLAGRYLIERGH--------RD  180 (341)
T ss_pred             HHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCCEEEEecccCCcCCCCeEEECcHHHHHHHHHHHHHCCC--------Cc
Confidence            45777889977765432 2223455544235565432                    1123344444443        48


Q ss_pred             EEEEecHHH-----HhhhhHHHHHHhcCC
Q 026201          218 IGVLAKNAI-----LTAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~T-----~~s~~Y~~~L~~~G~  241 (241)
                      |++++....     .+..-|.+.++++|+
T Consensus       181 i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi  209 (341)
T PRK10703        181 IGVIPGPLERNTGAGRLAGFMKAMEEANI  209 (341)
T ss_pred             EEEEeCCccccchHHHHHHHHHHHHHcCC
Confidence            999964321     122346777777663

>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)

Probab=85.94  E-value=26  Score=31.63  Aligned_cols=74  Identities=4%  Similarity=-0.047  Sum_probs=46.3

Q ss_pred             HHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec----------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          160 FLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I----------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      .+++.||++|+=+.+++... ...+-+..++|++..                      ....++.+.+.+.        +
T Consensus        62 Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~--------~  133 (334)
T cd06356          62 LALQDKVDVVWGGISSASREAIRPIMDRTKQLYFYTTQYEGGVCDRNTFCTGATPAQQFSTLVPYMMEKYG--------K  133 (334)
T ss_pred             HHHhCCCCEEEeCcchHHHHHHHHHHHhcCceEEeCCCccCCcccCCEEEeCCCcHHHHHHHHHHHHHccC--------C
Confidence            34567899999888887653 355555667877752                      2334555555432        3


Q ss_pred             EEEEEecHHHHh---hhhHHHHHHhcCC
Q 026201          217 RIGVLAKNAILT---AGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~~T~~---s~~Y~~~L~~~G~  241 (241)
                      ||+++..+...-   ...+++.+++.|+
T Consensus       134 ~vail~~d~~~g~~~~~~~~~~~~~~G~  161 (334)
T cd06356         134 KVYTIAADYNFGQISAEWVRKIVEENGG  161 (334)
T ss_pred             eEEEECCCchhhHHHHHHHHHHHHHcCC
Confidence            899998754322   3456777777663

This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily

Probab=85.63  E-value=20  Score=29.89  Aligned_cols=74  Identities=16%  Similarity=0.119  Sum_probs=39.9

Q ss_pred             HHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.+...++|.|++........ .+.+. ..++|++.+                   ...+++.+.+.|.        ++
T Consensus        48 ~~~~~~~~~d~iii~~~~~~~~~~~~~~-~~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~  118 (264)
T cd06267          48 LELLLSRRVDGIILAPSRLDDELLEELA-ALGIPVVLVDRPLDGLGVDSVGIDNRAGAYLAVEHLIELGH--------RR  118 (264)
T ss_pred             HHHHHHcCcCEEEEecCCcchHHHHHHH-HcCCCEEEecccccCCCCCEEeeccHHHHHHHHHHHHHCCC--------ce
Confidence            3456777999888765543333 33332 335555444                   1234455555443        49


Q ss_pred             EEEEecHHH-----HhhhhHHHHHHhcC
Q 026201          218 IGVLAKNAI-----LTAGFYQEKLQHED  240 (241)
Q Consensus       218 VGLLaT~~T-----~~s~~Y~~~L~~~G  240 (241)
                      |+++.....     -...-|++.+++.|
T Consensus       119 i~~i~~~~~~~~~~~r~~g~~~~~~~~~  146 (264)
T cd06267         119 IAFIGGPPDLSTARERLEGYREALEEAG  146 (264)
T ss_pred             EEEecCCCccchHHHHHHHHHHHHHHcC
Confidence            999965532     22334566666554

Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=85.54  E-value=1.8  Score=38.83  Aligned_cols=39  Identities=21%  Similarity=0.364  Sum_probs=32.5

Q ss_pred             HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201          156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS  195 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii  195 (241)
                      +.++.++++|||+|+++|- ......++.+.+++|++.+.
T Consensus       160 ~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~~~~P~~~~g  198 (240)
T cd06556         160 ADALAYAPAGADLIVMECV-PVELAKQITEALAIPLAGIG  198 (240)
T ss_pred             HHHHHHHHcCCCEEEEcCC-CHHHHHHHHHhCCCCEEEEe
Confidence            4457789999999999998 55567889999999998874

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=84.92  E-value=23  Score=30.14  Aligned_cols=75  Identities=11%  Similarity=0.112  Sum_probs=37.9

Q ss_pred             HHHHHhCCcEEEEeC-Cc--hhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCC
Q 026201          159 VFLEKAGARCIVMPC-HL--SHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       159 ~~Le~~Gad~IvIaC-NT--AH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~  216 (241)
                      +.|...++|.|++.. ++  ....++++++ .++|++.+-                   ..+++++.+..      .+..
T Consensus        49 ~~~~~~~vdgii~~~~~~~~~~~~i~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~------~g~~  121 (273)
T cd06305          49 DQAIAQKVDAIIIQHGRAEVLKPWVKRALD-AGIPVVAFDVDSDNPKVNNTTQDDYSLARLSLDQLVKDL------GGKG  121 (273)
T ss_pred             HHHHHcCCCEEEEecCChhhhHHHHHHHHH-cCCCEEEecCCCCCCccceeeechHHHHHHHHHHHHHHh------CCCC
Confidence            345566899888853 22  2233455443 345544431                   22444444420      1234


Q ss_pred             EEEEEecH----HHHhhhhHHHHHHhcC
Q 026201          217 RIGVLAKN----AILTAGFYQEKLQHED  240 (241)
Q Consensus       217 rVGLLaT~----~T~~s~~Y~~~L~~~G  240 (241)
                      +|++++..    ...+..-|++.++++|
T Consensus       122 ~i~~i~~~~~~~~~~R~~g~~~~~~~~~  149 (273)
T cd06305         122 NVGYVNVAGFPPLDRRYDVWQAVLKAYP  149 (273)
T ss_pred             CEEEEEccCCchHHHHHHHHHHHHHHCC
Confidence            89999632    2223345677776654

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=84.90  E-value=12  Score=31.72  Aligned_cols=74  Identities=18%  Similarity=0.205  Sum_probs=41.4

Q ss_pred             HHHHHHhCCcEEEEeCCchh-hhHHHHhccCCCCeeec-----------------cHHHHHHHHHhcCCCCCCCCCCEEE
Q 026201          158 RVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRIG  219 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH-~~~d~l~~~~~vPil~I-----------------id~t~~~i~~~~~k~~~~~~~~rVG  219 (241)
                      ++.|...++|.|++...... ...+.+++. ++|++-+                 ...+++++.+.+.+        +|+
T Consensus        48 i~~l~~~~~dgii~~~~~~~~~~~~~~~~~-~ipvv~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------~i~  118 (259)
T cd01542          48 LELLARQKVDGIILLATTITDEHREAIKKL-NVPVVVVGQDYPGISSVVYDDYGAGYELGEYLAQQGHK--------NIA  118 (259)
T ss_pred             HHHHHhcCCCEEEEeCCCCCHHHHHHHhcC-CCCEEEEeccCCCCCEEEECcHHHHHHHHHHHHHcCCC--------cEE
Confidence            35677889999988654322 234555432 4454422                 22355556665443        999


Q ss_pred             EEecHH----H--HhhhhHHHHHHhcC
Q 026201          220 VLAKNA----I--LTAGFYQEKLQHED  240 (241)
Q Consensus       220 LLaT~~----T--~~s~~Y~~~L~~~G  240 (241)
                      +++...    +  .+..-|++.+++.|
T Consensus       119 ~v~~~~~~~~~~~~r~~gf~~~~~~~~  145 (259)
T cd01542         119 YLGVSESDIAVGILRKQGYLDALKEHG  145 (259)
T ss_pred             EEcCCcccchhHHHHHHHHHHHHHHcC
Confidence            996431    1  22234677777665

Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=84.85  E-value=6.6  Score=35.04  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=70.5

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCC-CCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEEND-FPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~-~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      .|+-|-.||-......++.++|.....+.+. .+++|.-..+.   +..               .....++.+    +.+
T Consensus       109 ~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa---~~~---------------~~~~~~eai----~Ra  166 (243)
T cd00377         109 PKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDA---LLA---------------GEEGLDEAI----ERA  166 (243)
T ss_pred             CccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCc---hhc---------------cCCCHHHHH----HHH
Confidence            4556777888888999999999888776522 56666442211   000               011223332    334


Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccH-----HHHHHHHHhcCC
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-----CVAKELKEANMK  208 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid-----~t~~~i~~~~~k  208 (241)
                      +..+++|||++.+++-+--..+.++.+..+.|++=..-     ...+.+.+.|.+
T Consensus       167 ~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~  221 (243)
T cd00377         167 KAYAEAGADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELGVR  221 (243)
T ss_pred             HHHHHcCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCe
Confidence            56789999999999987555678888888888765432     368888888875

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins

Probab=84.66  E-value=2.4  Score=37.82  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=27.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCch
Q 026201          144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLS  176 (241)
Q Consensus       144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTA  176 (241)
                      .....++...+++.++.|++.|+|.|++-|---
T Consensus        66 ~ls~~~v~~~lq~~i~~le~~G~d~illlCTG~   98 (221)
T PF07302_consen   66 VLSKKKVEPRLQACIAQLEAQGYDVILLLCTGE   98 (221)
T ss_pred             EEEHHHHHHHHHHHHHHHHHCCCCEEEEeccCC
Confidence            345678889999999999999999999999643

In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.

>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR

Probab=84.62  E-value=22  Score=30.08  Aligned_cols=74  Identities=14%  Similarity=0.054  Sum_probs=39.7

Q ss_pred             HHHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++.-..... .++++++ .++|++-+                   ....++.+.+.|.+        +
T Consensus        48 ~~~l~~~~~dgiii~~~~~~~~~l~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~--------~  118 (267)
T cd06283          48 LESLLAYQVDGLIVNPTGNNKELYQRLAK-NGKPVVLVDRKIPELGVDTVTLDNYEAAKEAVDHLIEKGYE--------R  118 (267)
T ss_pred             HHHHHHcCcCEEEEeCCCCChHHHHHHhc-CCCCEEEEcCCCCCCCCCEEEeccHHHHHHHHHHHHHcCCC--------c
Confidence            345677889977764332222 2444433 34555443                   22345555555543        8


Q ss_pred             EEEEecHHH------HhhhhHHHHHHhcC
Q 026201          218 IGVLAKNAI------LTAGFYQEKLQHED  240 (241)
Q Consensus       218 VGLLaT~~T------~~s~~Y~~~L~~~G  240 (241)
                      |++++.+..      .+..-|++.++++|
T Consensus       119 i~~l~~~~~~~~~~~~r~~g~~~~~~~~~  147 (267)
T cd06283         119 ILFVTEPLDEISPRMERYEGFKEALAEHG  147 (267)
T ss_pred             EEEEecCccccccHHHHHHHHHHHHHHcC
Confidence            999953221      23344777777665

Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b

>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional

Probab=84.46  E-value=22  Score=32.49  Aligned_cols=84  Identities=8%  Similarity=-0.070  Sum_probs=47.7

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      .++||++=   |...-.|+..+.+...+.   ....+++++..                       ...+.+...    +
T Consensus        46 t~~Igvv~---p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~-----------------------~~~~~~~q~----~   95 (343)
T PRK10936         46 AWKLCALY---PHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAG-----------------------GYYNLAKQQ----Q   95 (343)
T ss_pred             CeEEEEEe---cCCCchHHHHHHHHHHHHHHHhCCEEEEEcCC-----------------------CCCCHHHHH----H
Confidence            46888774   333456888777776643   44556554411                       001122222    3


Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHH-hccCCCCeee
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEV-CKGCSVPFLH  193 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l-~~~~~vPil~  193 (241)
                      .++.|...++|.|++.+.....+.+.+ ....++|++-
T Consensus        96 ~i~~l~~~~vdgIIl~~~~~~~~~~~l~~~~~giPvV~  133 (343)
T PRK10936         96 QLEQCVAWGADAILLGAVTPDGLNPDLELQAANIPVIA  133 (343)
T ss_pred             HHHHHHHhCCCEEEEeCCChHHhHHHHHHHHCCCCEEE
Confidence            345678889999999876655543443 1234677764

>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators

Probab=84.19  E-value=23  Score=30.11  Aligned_cols=74  Identities=16%  Similarity=0.301  Sum_probs=38.8

Q ss_pred             HHHHHHhCCcEEEE-eCCchhh-hHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCC
Q 026201          158 RVFLEKAGARCIVM-PCHLSHI-WHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       158 ~~~Le~~Gad~IvI-aCNTAH~-~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~  216 (241)
                      .+.+...++|.|++ ++++... ..+.+++ .++|++-+-                   ..+++.+.+.|.        +
T Consensus        49 ~~~l~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvv~i~~~~~~~~~~~V~~d~~~~g~~a~~~l~~~g~--------~  119 (270)
T cd01545          49 RALLQRSRVDGVILTPPLSDNPELLDLLDE-AGVPYVRIAPGTPDPDSPCVRIDDRAAAREMTRHLIDLGH--------R  119 (270)
T ss_pred             HHHHHHCCCCEEEEeCCCCCccHHHHHHHh-cCCCEEEEecCCCCCCCCeEEeccHHHHHHHHHHHHHCCC--------c
Confidence            35677789997665 4553222 2344432 456655331                   234445555443        3


Q ss_pred             EEEEEecHH---HHh--hhhHHHHHHhcC
Q 026201          217 RIGVLAKNA---ILT--AGFYQEKLQHED  240 (241)
Q Consensus       217 rVGLLaT~~---T~~--s~~Y~~~L~~~G  240 (241)
                      +|++++...   +..  ..-|++.+++.|
T Consensus       120 ~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~  148 (270)
T cd01545         120 RIAFIAGPPDHRASAERLEGYRDALAEAG  148 (270)
T ss_pred             eEEEEeCCCCchhHHHHHHHHHHHHHHcC
Confidence            899985321   112  223677776655

Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind

>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism

Probab=83.68  E-value=27  Score=29.83  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=41.5

Q ss_pred             HHHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      .++.|.+.++|.|++..+..... ++++.+ .++|++-+                   ...+++.+.+.|.+        
T Consensus        47 ~i~~~~~~~vdgii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------  117 (268)
T cd06270          47 AIEFLLERRCDALILHSKALSDDELIELAA-QVPPLVLINRHIPGLADRCIWLDNEQGGYLATEHLIELGHR--------  117 (268)
T ss_pred             HHHHHHHcCCCEEEEecCCCCHHHHHHHhh-CCCCEEEEeccCCCCCCCeEEECcHHHHHHHHHHHHHCCCc--------
Confidence            34566778999888765443332 455443 34554443                   12334555555443        


Q ss_pred             EEEEEecHH-----HHhhhhHHHHHHhcC
Q 026201          217 RIGVLAKNA-----ILTAGFYQEKLQHED  240 (241)
Q Consensus       217 rVGLLaT~~-----T~~s~~Y~~~L~~~G  240 (241)
                      +|++++...     ..+..-|++.++++|
T Consensus       118 ~i~~i~~~~~~~~~~~R~~gf~~~~~~~~  146 (268)
T cd06270         118 KIACITGPLTKEDARLRLQGYRDALAEAG  146 (268)
T ss_pred             eEEEEeCCcccccHHHHHHHHHHHHHHcC
Confidence            899986532     122334677777765

Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi

>PRK10355 xylF D-xylose transporter subunit XylF; Provisional

Probab=83.41  E-value=24  Score=32.26  Aligned_cols=83  Identities=11%  Similarity=-0.010  Sum_probs=46.9

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      ..++||++..   .-.-.||..+.+.....   ....+++++.                         ..+.+..    .
T Consensus        24 ~~~~Ig~i~~---~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~-------------------------~~~~~~~----~   71 (330)
T PRK10355         24 KEVKIGMAID---DLRLERWQKDRDIFVKKAESLGAKVFVQSA-------------------------NGNEETQ----M   71 (330)
T ss_pred             CCceEEEEec---CCCchHHHHHHHHHHHHHHHcCCEEEEECC-------------------------CCCHHHH----H
Confidence            3679999973   22345888888877643   5566666541                         1112222    2


Q ss_pred             HHHHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeec
Q 026201          156 RKRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV  194 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~I  194 (241)
                      +.++.|...++|.|++.+....   .+++.++ ..++|+|-+
T Consensus        72 ~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~-~~~iPvV~i  112 (330)
T PRK10355         72 SQIENMINRGVDVLVIIPYNGQVLSNVIKEAK-QEGIKVLAY  112 (330)
T ss_pred             HHHHHHHHcCCCEEEEeCCChhhHHHHHHHHH-HCCCeEEEE
Confidence            3345678889998888764322   3344443 234665543

>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs

Probab=83.19  E-value=29  Score=29.92  Aligned_cols=72  Identities=11%  Similarity=0.034  Sum_probs=40.4

Q ss_pred             HHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeecc-----------------HHHHHHHHHhcCCCCCCCCCCEEEEE
Q 026201          160 FLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVS-----------------ECVAKELKEANMKPLEAGSPLRIGVL  221 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Ii-----------------d~t~~~i~~~~~k~~~~~~~~rVGLL  221 (241)
                      .|...++|.|++.+..... +.+.+++ .++|++-+-                 ..+++++.+. .+        +|+++
T Consensus        50 ~l~~~~vdgvi~~~~~~~~~~~~~l~~-~~iPvv~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~-~~--------~i~~i  119 (269)
T cd06297          50 TTLAYLTDGLLLASYDLTERLAERRLP-TERPVVLVDAENPRFDSFYLDNRLGGRLAGAYLADF-PG--------RIGAI  119 (269)
T ss_pred             HHHhcCCCEEEEecCccChHHHHHHhh-cCCCEEEEccCCCCCCEEEECcHHHHHHHHHHHHHh-CC--------ceEEE
Confidence            4677889988887655443 3355543 356655331                 2344555554 44        89988


Q ss_pred             ecHH-----------HHhhhhHHHHHHhcCC
Q 026201          222 AKNA-----------ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       222 aT~~-----------T~~s~~Y~~~L~~~G~  241 (241)
                      +...           ..+..=|++.++++|+
T Consensus       120 ~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~  150 (269)
T cd06297         120 TVEEEPDRAFRRTVFAERRAGFQQALKDAGR  150 (269)
T ss_pred             eCccccccccccccHHHHHHHHHHHHHHcCC
Confidence            6422           1223336777776653

Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.

>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=82.85  E-value=14  Score=31.53  Aligned_cols=75  Identities=20%  Similarity=0.281  Sum_probs=42.6

Q ss_pred             HHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCCEE
Q 026201          158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLRI  218 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~rV  218 (241)
                      .+.|...++|.|++........++.+.+ .++|++.+-                   ..+++++.+.|.+        +|
T Consensus        51 ~~~l~~~~vdgiii~~~~~~~~~~~l~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~g~~--------~i  121 (268)
T cd06277          51 PSFLEDGKVDGIILLGGISTEYIKEIKE-LGIPFVLVDHYIPNEKADCVLTDNYSGAYAATEYLIEKGHR--------KI  121 (268)
T ss_pred             HHHHHHCCCCEEEEeCCCChHHHHHHhh-cCCCEEEEccCCCCCCCCEEEecchHHHHHHHHHHHHCCCC--------cE
Confidence            3457788999888755332333455543 356655542                   1233445555443        99


Q ss_pred             EEEecHHH-----HhhhhHHHHHHhcCC
Q 026201          219 GVLAKNAI-----LTAGFYQEKLQHEDC  241 (241)
Q Consensus       219 GLLaT~~T-----~~s~~Y~~~L~~~G~  241 (241)
                      ++++.+..     .+..-|.+.++++|+
T Consensus       122 ~~i~~~~~~~~~~~R~~gf~~~~~~~~~  149 (268)
T cd06277         122 GFVGDPLYSPSFEERYEGYKKALLDHGI  149 (268)
T ss_pred             EEECCCCCCcchHHHHHHHHHHHHHcCC
Confidence            99975542     233347777777653

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=82.85  E-value=26  Score=29.54  Aligned_cols=74  Identities=15%  Similarity=0.131  Sum_probs=40.4

Q ss_pred             HHHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.+.+.++|.|++. |......++.+.+ .++|++.+-                   ..+++++.+.|.        ++
T Consensus        47 i~~~~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~  117 (266)
T cd06278          47 LRQLLQYRVDGVIVTSGTLSSELAEECRR-NGIPVVLINRYVDGPGVDAVCSDNYEAGRLAAELLLAKGC--------RR  117 (266)
T ss_pred             HHHHHHcCCCEEEEecCCCCHHHHHHHhh-cCCCEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHCCC--------ce
Confidence            345677899977774 4432233455544 356665541                   234455555543        39


Q ss_pred             EEEEecHHH-----HhhhhHHHHHHhcC
Q 026201          218 IGVLAKNAI-----LTAGFYQEKLQHED  240 (241)
Q Consensus       218 VGLLaT~~T-----~~s~~Y~~~L~~~G  240 (241)
                      |++++.+..     -+..-|.+.+++.|
T Consensus       118 i~~i~~~~~~~~~~~R~~gf~~~~~~~~  145 (266)
T cd06278         118 IAFIGGPADTSTSRERERGFRDALAAAG  145 (266)
T ss_pred             EEEEcCCCcccchHHHHHHHHHHHHHcC
Confidence            999975321     12233666666654

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=82.60  E-value=8.5  Score=34.49  Aligned_cols=99  Identities=21%  Similarity=0.239  Sum_probs=57.6

Q ss_pred             CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhCCc
Q 026201           88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGAR  167 (241)
Q Consensus        88 GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad  167 (241)
                      |-.-.+..++.+||.....+.+.+.++|.-..+   .++.                  ....+-+.+++ ++...++|||
T Consensus       113 ~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTD---a~~~------------------~~~~~deaI~R-~~aY~eAGAD  170 (238)
T PF13714_consen  113 GKQLVSPEEMVAKIRAAVDARRDPDFVIIARTD---AFLR------------------AEEGLDEAIER-AKAYAEAGAD  170 (238)
T ss_dssp             TT-B--HHHHHHHHHHHHHHHSSTTSEEEEEEC---HHCH------------------HHHHHHHHHHH-HHHHHHTT-S
T ss_pred             CCceeCHHHHHHHHHHHHHhccCCeEEEEEecc---cccc------------------CCCCHHHHHHH-HHHHHHcCCC
Confidence            444456678888888777754233355533221   1100                  01122333333 3455689999


Q ss_pred             EEEEeCCchhhhHHHHhccCCCCeeecc---HHHHHHHHHhcCC
Q 026201          168 CIVMPCHLSHIWHDEVCKGCSVPFLHVS---ECVAKELKEANMK  208 (241)
Q Consensus       168 ~IvIaCNTAH~~~d~l~~~~~vPil~Ii---d~t~~~i~~~~~k  208 (241)
                      +|.+++-+.-.-..++.+.+++|+.-+.   ..+.+++.+.|.+
T Consensus       171 ~ifi~~~~~~~~i~~~~~~~~~Pl~v~~~~~~~~~~eL~~lGv~  214 (238)
T PF13714_consen  171 MIFIPGLQSEEEIERIVKAVDGPLNVNPGPGTLSAEELAELGVK  214 (238)
T ss_dssp             EEEETTSSSHHHHHHHHHHHSSEEEEETTSSSS-HHHHHHTTES
T ss_pred             EEEeCCCCCHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHHCCCc
Confidence            9999998666557777777789965444   2678899999875

...

>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=82.20  E-value=21  Score=32.41  Aligned_cols=26  Identities=12%  Similarity=0.270  Sum_probs=16.5

Q ss_pred             CCEEEEEecHHHHhhhh---HHHHHHhcC
Q 026201          215 PLRIGVLAKNAILTAGF---YQEKLQHED  240 (241)
Q Consensus       215 ~~rVGLLaT~~T~~s~~---Y~~~L~~~G  240 (241)
                      .+||++++.+...-...   |++.+++.|
T Consensus       138 ~~~v~il~~d~~~g~~~~~~~~~~l~~~G  166 (347)
T cd06336         138 GKKVALLGPNDAYGQPWVAAYKAAWEAAG  166 (347)
T ss_pred             CceEEEEccCCchhHHHHHHHHHHHHHcC
Confidence            45999998876544332   455666655

This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>TIGR02990 ectoine_eutA ectoine utilization protein EutA

Probab=82.17  E-value=3.1  Score=37.27  Aligned_cols=57  Identities=12%  Similarity=0.152  Sum_probs=44.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh--HHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       145 ~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      .+.+.+.+.+    +.+...+||.|+|.|.-.+.+  .+++.+.+++|+|+--.+++=++.+.
T Consensus       165 i~p~~i~~~~----~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqat~W~~Lr~  223 (239)
T TIGR02990       165 ISPDCIVEAA----LAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQATAWRCLRL  223 (239)
T ss_pred             cCHHHHHHHH----HHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHHHHHHHHHH
Confidence            3555665544    345678999999999999986  59999999999999888886665553

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.

>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation

Probab=82.15  E-value=19  Score=30.70  Aligned_cols=36  Identities=11%  Similarity=0.170  Sum_probs=20.7

Q ss_pred             HHHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeee
Q 026201          157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLH  193 (241)
Q Consensus       157 ~~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~  193 (241)
                      .++.|...++|.|++ +++.....++++.+ .++|++-
T Consensus        47 ~i~~l~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~   83 (270)
T cd06296          47 WVERLSARRTDGVILVTPELTSAQRAALRR-TGIPFVV   83 (270)
T ss_pred             HHHHHHHcCCCEEEEecCCCChHHHHHHhc-CCCCEEE
Confidence            335677889997765 45544444555544 3555444

This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial

Probab=81.85  E-value=33  Score=30.44  Aligned_cols=38  Identities=13%  Similarity=0.134  Sum_probs=24.6

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCEEEEEecHH----HHh--hhhHHHHHHhcCC
Q 026201          196 ECVAKELKEANMKPLEAGSPLRIGVLAKNA----ILT--AGFYQEKLQHEDC  241 (241)
Q Consensus       196 d~t~~~i~~~~~k~~~~~~~~rVGLLaT~~----T~~--s~~Y~~~L~~~G~  241 (241)
                      ..+++++.+.|.+        |||+++.+.    +..  ..-|++.++++|+
T Consensus       161 ~~a~~~L~~~Ghr--------~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi  204 (311)
T TIGR02405       161 ELLMANLYQQGHR--------HISFLGVDPSDKTTGLMRHNAYLAYCESANL  204 (311)
T ss_pred             HHHHHHHHHcCCC--------cEEEEccCcccchhHHHHHHHHHHHHHHcCC
Confidence            3466777777765        999997421    222  2338888888774

This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=81.61  E-value=3.1  Score=39.47  Aligned_cols=36  Identities=19%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             HHHHHHHhCCcEEEEeCCchhhh--HHHHhccCCCCee
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFL  192 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~~~vPil  192 (241)
                      -++.|+++|||.+=++|++.-..  +.+|++++++|++
T Consensus        41 QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLV   78 (361)
T COG0821          41 QIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLV   78 (361)
T ss_pred             HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEE
Confidence            44679999999999999998875  5999999999986

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily

Probab=81.20  E-value=28  Score=28.36  Aligned_cols=74  Identities=16%  Similarity=0.172  Sum_probs=39.6

Q ss_pred             HHHHHHhCCcEEEEeCCc-hhh-hHHHHhccCCCCeeec-----------------------cHHHHHHHHHhcCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHL-SHI-WHDEVCKGCSVPFLHV-----------------------SECVAKELKEANMKPLEA  212 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNT-AH~-~~d~l~~~~~vPil~I-----------------------id~t~~~i~~~~~k~~~~  212 (241)
                      ++.|...++|.|+++-.. .-. ..+.+ ...++|+|.+                       .+..++.+.+.+.     
T Consensus        51 ~~~~~~~~~d~ii~~~~~~~~~~~~~~~-~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----  124 (269)
T cd01391          51 LRDLIQQGVDGIIGPPSSSSALAVVELA-AAAGIPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYLAEKGW-----  124 (269)
T ss_pred             HHHHHHcCCCEEEecCCCHHHHHHHHHH-HHcCCcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHHHHhCC-----
Confidence            345666688877765332 222 22332 2345665543                       2334555666543     


Q ss_pred             CCCCEEEEEecHHH----HhhhhHHHHHHhcC
Q 026201          213 GSPLRIGVLAKNAI----LTAGFYQEKLQHED  240 (241)
Q Consensus       213 ~~~~rVGLLaT~~T----~~s~~Y~~~L~~~G  240 (241)
                         ++|++++.+..    .....|++.+++.|
T Consensus       125 ---~~i~~i~~~~~~~~~~~~~~~~~~~~~~~  153 (269)
T cd01391         125 ---KRVALIYGDDGAYGRERLEGFKAALKKAG  153 (269)
T ss_pred             ---ceEEEEecCCcchhhHHHHHHHHHHHhcC
Confidence               39999987662    22344566665554

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con

>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=80.86  E-value=35  Score=29.20  Aligned_cols=74  Identities=12%  Similarity=0.141  Sum_probs=40.8

Q ss_pred             HHHHHHhCCcEEEE-eCCch-hhhHHHHhccCCCCeeecc------------------HHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVM-PCHLS-HIWHDEVCKGCSVPFLHVS------------------ECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvI-aCNTA-H~~~d~l~~~~~vPil~Ii------------------d~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++ +|+.. ..+.+.+++ .++|++-+-                  ..+++.+.+.|.+        +
T Consensus        48 i~~l~~~~vdgii~~~~~~~~~~~~~~~~~-~~ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~G~~--------~  118 (269)
T cd06281          48 LRSFEQRRMDGIIIAPGDERDPELVDALAS-LDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLISLGHR--------R  118 (269)
T ss_pred             HHHHHHcCCCEEEEecCCCCcHHHHHHHHh-CCCCEEEEecccCCCCCEEEECcHHHHHHHHHHHHHCCCc--------E
Confidence            34577789996665 56432 234455544 245544331                  2344555555543        8


Q ss_pred             EEEEecHH-----HHhhhhHHHHHHhcC
Q 026201          218 IGVLAKNA-----ILTAGFYQEKLQHED  240 (241)
Q Consensus       218 VGLLaT~~-----T~~s~~Y~~~L~~~G  240 (241)
                      |+++++..     ..+..=|.+.++++|
T Consensus       119 i~~l~~~~~~~~~~~R~~Gf~~~~~~~~  146 (269)
T cd06281         119 IALVGGGSNTRPGRERLEGYKAAFAAAG  146 (269)
T ss_pred             EEEecCccccccHHHHHHHHHHHHHHcC
Confidence            99997642     122233677777765

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions

Probab=80.75  E-value=35  Score=29.18  Aligned_cols=36  Identities=8%  Similarity=-0.045  Sum_probs=20.5

Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV  194 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I  194 (241)
                      .++.|...++|.|++.. +....... ....++|++-+
T Consensus        52 ~~~~l~~~~vd~iI~~~-~~~~~~~~-~~~~~iPvV~~   87 (281)
T cd06325          52 IARKFVADKPDLIVAIA-TPAAQAAA-NATKDIPIVFT   87 (281)
T ss_pred             HHHHHHhcCCCEEEEcC-cHHHHHHH-HcCCCCCEEEE
Confidence            33557778999888864 32222222 33456777654

This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.

>PRK09492 treR trehalose repressor; Provisional

Probab=80.71  E-value=31  Score=30.39  Aligned_cols=74  Identities=8%  Similarity=0.079  Sum_probs=40.4

Q ss_pred             HHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec-----------------cHHHHHHHHHhcCCCCCCCCCCEEEE
Q 026201          158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRIGV  220 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I-----------------id~t~~~i~~~~~k~~~~~~~~rVGL  220 (241)
                      ++.|...++|.|++...+. .-.+.+.+ ...|++-+                 +..+++++.+.|.+        +|++
T Consensus       111 ~~~l~~~~vdgiIi~~~~~-~~~~~l~~-~~~pvv~i~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I~~  180 (315)
T PRK09492        111 LGVLKRRNVDGVILFGFTG-ITEEMLAP-WQDKLVLLARDAKGFSSVCYDDEGAIKLLMQRLYDQGHR--------HISY  180 (315)
T ss_pred             HHHHHhcCCCEEEEeCCCc-ccHHHHHh-cCCCEEEEeccCCCCcEEEECcHHHHHHHHHHHHHcCCC--------eEEE
Confidence            3567788899777643221 11233322 12233222                 22356667776655        9999


Q ss_pred             EecH-H-----HHhhhhHHHHHHhcCC
Q 026201          221 LAKN-A-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       221 LaT~-~-----T~~s~~Y~~~L~~~G~  241 (241)
                      ++.. .     ..+..-|++.++++|+
T Consensus       181 i~~~~~~~~~~~~R~~Gf~~al~~~g~  207 (315)
T PRK09492        181 LGVDHSDVTTGKRRHQAYLAFCKQHKL  207 (315)
T ss_pred             EcCCcccchhHHHHHHHHHHHHHHcCC
Confidence            9732 1     1233458888888774

>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia

Probab=80.29  E-value=35  Score=28.89  Aligned_cols=74  Identities=14%  Similarity=0.057  Sum_probs=38.9

Q ss_pred             HHHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|.+.++|.|++...+ .-..++++++. ++|++-+                   ...+++.+.+.|.        ++
T Consensus        48 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~-~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~~  118 (265)
T cd06299          48 LDNLLSQRVDGIIVVPHEQSAEQLEDLLKR-GIPVVFVDREITGSPIPFVTSDPQPGMTEAVSLLVALGH--------KK  118 (265)
T ss_pred             HHHHHhcCCCEEEEcCCCCChHHHHHHHhC-CCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCC--------Cc
Confidence            356778899977775432 22234555442 4554322                   1123344444443        38


Q ss_pred             EEEEecHHH-----HhhhhHHHHHHhcC
Q 026201          218 IGVLAKNAI-----LTAGFYQEKLQHED  240 (241)
Q Consensus       218 VGLLaT~~T-----~~s~~Y~~~L~~~G  240 (241)
                      |++++...+     .+..-|.+.++++|
T Consensus       119 I~~i~~~~~~~~~~~R~~gf~~~~~~~~  146 (265)
T cd06299         119 IGYISGPQDTSTGRERLEAFRQACASLG  146 (265)
T ss_pred             EEEEeCCCCcccHHHHHHHHHHHHHHCC
Confidence            998843222     22244777777766

This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
3s81_A	268	Crystal Structure Of Putative Aspartate Racemase Fr		1e-09
3s7z_A	268	Crystal Structure Of Putative Aspartate Racemase Fr		8e-09
1jfl_A	228	Crystal Structure Determination Of Aspartate Racema		6e-06
2dx7_A	228	Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspa		4e-05
3ojc_A	231	Crystal Structure Of A Putative AspGLU RACEMASE FRO		7e-05
2zsk_A	226	Crystal Structure Of Ph1733, An Aspartate Racemase		9e-05

>pdb|3S81|A Chain A, Crystal Structure Of Putative Aspartate Racemase From Salmonella Typhimurium Length = 268

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 36/182 (19%)
Query: 60  SKKSFGSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQL---SGEENDFPFLLC 116
           S    G++   F S+A+    +T+GI+GG    +T ++L K V+L   S ++   P ++ 
Sbjct: 9   SGVDLGTENLYFQSNAM---KHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVS 65
Query: 117 SDPLLNKE---LLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPC 173
           S P +      LLS   S +                    L R    LE AGA CIV+PC
Sbjct: 66  SIPDIPDRTACLLSGGPSPY------------------RYLERYLHMLEDAGAECIVIPC 107
Query: 174 HLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ 233
           + +H W D++        + + +    ++           S   +G+LA NA L  G YQ
Sbjct: 108 NTAHYWFDDLQNVAKARMISILDATLGDIPP---------SARHVGLLATNATLATGLYQ 158
Query: 234 EK 235
           +K
Sbjct: 159 KK 160

>pdb|3S7Z|A Chain A, Crystal Structure Of Putative Aspartate Racemase From Salmonella Typhimurium Complexed With Succinate Length = 268

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 33/161 (20%)
Query: 81  NTVGIVGGASVDSTLNLLGKLVQL---SGEENDFPFLLCSDPLLNKE---LLSHDRSSFS 134
           +T+GI+GG    +T + L K V+L   S ++   P ++ S P +      LLS   S + 
Sbjct: 27  HTIGILGGXGPAATADXLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPY- 85
Query: 135 SLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194
                              L R    LE AGA CIV+PC+ +H W D+          +V
Sbjct: 86  -----------------RYLERYLHXLEDAGAECIVIPCNTAHYWFDD--------LQNV 120
Query: 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEK 235
           ++     + +A +  +   S   +G+LA NA L  G YQ+K
Sbjct: 121 AKARXISILDATLGDIPP-SARHVGLLATNATLATGLYQKK 160

>pdb|1JFL|A Chain A, Crystal Structure Determination Of Aspartate Racemase From An Archaea Length = 228

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 81  NTVGIVGGASVDSTLNLLGKLVQLSGEENDF---PFLLCSDPLLNKELLSHDRSSFSSLN 137
            T+GI+GG    +T  L  ++V  +  + D      ++ ++P +       DR+++    
Sbjct: 2   KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQI------PDRTAY---- 51
Query: 138 CKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC 197
             G G      LI    R     LE+ GA  I+MPC+ +H + +++ K   +P + + E 
Sbjct: 52  ILGKGEDPRPQLIWTAKR-----LEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEE 106
Query: 198 VAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236
            AK++KE   K        + G+LA    + +G Y+++ 
Sbjct: 107 TAKKVKELGFK--------KAGLLATTGTIVSGVYEKEF 137

>pdb|2DX7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate Racemase Complex With Citric Acid Length = 228

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 81  NTVGIVGGASVDSTLNLLGKLVQLSGEENDF---PFLLCSDPLLNKELLSHDRSSFSSLN 137
            T+GI+GG    +T  L  ++V  +  + D      ++ ++P +       DR+++    
Sbjct: 2   KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQI------PDRTAY---- 51
Query: 138 CKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC 197
             G G      LI    R     LE+ GA  I+MP + +H + +++ K   +P + + E 
Sbjct: 52  ILGKGEDPRPQLIWTAKR-----LEECGADFIIMPANTAHAFVEDIRKAIKIPIISMIEE 106
Query: 198 VAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236
            AK++KE   K        + G+LA    + +G Y+++ 
Sbjct: 107 TAKKVKELGFK--------KAGLLATTGTIVSGVYEKEF 137

>pdb|3OJC|A Chain A, Crystal Structure Of A Putative AspGLU RACEMASE FROM YERSINIA PESTIS Length = 231

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 83  VGIVGGASVDSTLNLLGKL-----VQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLN 137
           +G++GG S +ST+     +      QL G        L S  ++   L S D      L 
Sbjct: 5   LGLIGGXSWESTIPYYRXINQHVKAQLGG--------LHSAKII---LYSVDFHEIEQLQ 53
Query: 138 CKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC 197
            KG     D     + L    + L+ AGA  IV+  +  H   D++   C +P LH+++ 
Sbjct: 54  AKG-----DWQTAAQLLSNAAISLKHAGAEVIVVCTNTXHKVADDIEAACGLPLLHIADA 108
Query: 198 VAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236
            A ++K+  +         +IG+L        GFY+ +L
Sbjct: 109 TAVQIKQQGID--------KIGLLGTRYTXEQGFYRGRL 139

>pdb|2ZSK|A Chain A, Crystal Structure Of Ph1733, An Aspartate Racemase Homologue, From Pyrococcus Horikoshii Ot3 Length = 226

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 21/156 (13%)
Query: 83  VGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGG 142
           +GI+GG + +STL    K +++S E+ +  F          EL+ +   +F        G
Sbjct: 4   IGIIGGTTPESTLYYYKKYIEISREKFEKYFY--------PELIIYS-INFKEFFQNPEG 54
Query: 143 VQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202
            +    +++   +     LE+AGA  I    +  H+  D+V +  +VP + + + VA+E+
Sbjct: 55  WEGRKKILINAAKA----LERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEI 110
Query: 203 KEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238
            +  ++        ++ +L     +TA FY + L+ 
Sbjct: 111 LKRGVR--------KVLLLGTKTTMTADFYIKTLEE 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
3s81_A	268	Putative aspartate racemase; structural genomics,	9e-17
3ojc_A	231	Putative aspartate/glutamate racemase; structural	5e-16
1jfl_A	228	Aspartate racemase; alpha-beta structure, HOMO-dim	8e-15
2zsk_A	226	PH1733, 226AA long hypothetical aspartate racemase	7e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10

>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A Length = 268

 Score = 76.3 bits (187), Expect = 9e-17
 Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 27/164 (16%)

Query: 81  NTVGIVGGASVDSTLNLLGKLVQLSGEEND---FPFLLCSDPLLNKELLSHDRSSFSSLN 137
           +T+GI+GG    +T ++L K V+L     D    P ++ S P +       DR++     
Sbjct: 27  HTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDI------PDRTAC---- 76

Query: 138 CKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC 197
                +          L R    LE AGA CIV+PC+ +H W D++        + + + 
Sbjct: 77  -----LLSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDA 131

Query: 198 VAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEDC 241
              ++  +        +          A L  G YQ+K      
Sbjct: 132 TLGDIPPSARHVGLLATN---------ATLATGLYQKKALARGL 166

>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis} Length = 231

 Score = 73.6 bits (180), Expect = 5e-16
 Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 25/160 (15%)

Query: 82  TVGIVGGASVDSTLNLLGKLVQLSGEEND---FPFLLCSDPLLNKELLSHDRSSFSSLNC 138
            +G++GG S +ST+     + Q    +        ++           S D      L  
Sbjct: 4   ILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILY---------SVDFHEIEQLQA 54

Query: 139 KGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECV 198
           KG     D     + L    + L+ AGA  IV+  +  H   D++   C +P LH+++  
Sbjct: 55  KG-----DWQTAAQLLSNAAISLKHAGAEVIVVCTNTMHKVADDIEAACGLPLLHIADAT 109

Query: 199 AKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238
           A ++K+  +         +IG+L     +  GFY+ +L  
Sbjct: 110 AVQIKQQGID--------KIGLLGTRYTMEQGFYRGRLTE 141

>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A Length = 228

 Score = 70.1 bits (171), Expect = 8e-15
 Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 26/162 (16%)

Query: 82  TVGIVGGASVDSTLNLLGKLVQLSGEEND---FPFLLCSDPLLNKELLSHDRSSFSSLNC 138
           T+GI+GG    +T  L  ++V  +  + D      ++ ++P +                 
Sbjct: 3   TIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYILG-------- 54

Query: 139 KGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECV 198
                          L      LE+ GA  I+MPC+ +H + +++ K   +P + + E  
Sbjct: 55  -------KGEDPRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEET 107

Query: 199 AKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHED 240
           AK++KE   K          G+LA    + +G Y+++     
Sbjct: 108 AKKVKELGFKK--------AGLLATTGTIVSGVYEKEFSKYG 141

>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii} Length = 226

 Score = 67.8 bits (165), Expect = 7e-14
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 27/162 (16%)

Query: 82  TVGIVGGASVDSTLNLLGKLVQLSGEEND---FPFLLCSDPLLNKELLSHDRSSFSSLNC 138
            +GI+GG + +STL    K +++S E+ +   +P L+       KE   +          
Sbjct: 3   KIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINF-KEFFQN---------- 51

Query: 139 KGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECV 198
                        + L      LE+AGA  I    +  H+  D+V +  +VP + + + V
Sbjct: 52  -----PEGWEGRKKILINAAKALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAV 106

Query: 199 AKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHED 240
           A+E+ +  ++         + +L     +TA FY + L+ + 
Sbjct: 107 AEEILKRGVRK--------VLLLGTKTTMTADFYIKTLEEKG 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 6e-10
 Identities = 45/282 (15%), Positives = 79/282 (28%), Gaps = 82/282 (29%)

Query: 9   SVNTLNYPSCTLGFVNSYRTLSRTRL-NSNPLLAMPPSSV------------LLQ-TDES 54
           S+ T  Y               R RL N N +      +V            LL+     
Sbjct: 106 SMMTRMYIEQ------------RDRLYNDNQVF--AKYNVSRLQPYLKLRQALLELRPAK 151

Query: 55  GKFQESKKSFGSK---AAPFCSDALLNQANTVGI----VGGA-SVDSTLNLLGKL-VQLS 105
               +     G K   A   C    +       I    +    S ++ L +L KL  Q+ 
Sbjct: 152 NVLIDGVLGSG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 106 GEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIV-ENLRRKRVFLEKA 164
                      +  L    + +  R    S          ++ L+V  N++  +      
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-------PYENCLLVLLNVQNAKA-WNAF 262

Query: 165 GARC-------------IVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL--KEANMK- 208
              C              +     +HI  D          L   E   K L  K  + + 
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-----LTPDE--VKSLLLKYLDCRP 315

Query: 209 ---PLEA--GSPLRIGVLA---KNAILTAGFYQ----EKLQH 238
              P E    +P R+ ++A   ++ + T   ++    +KL  
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
3ojc_A	231	Putative aspartate/glutamate racemase; structural	100.0
3s81_A	268	Putative aspartate racemase; structural genomics,	100.0
1jfl_A	228	Aspartate racemase; alpha-beta structure, HOMO-dim	100.0
2zsk_A	226	PH1733, 226AA long hypothetical aspartate racemase	100.0
2oho_A	273	Glutamate racemase; isomerase; 2.25A {Streptococcu	99.89
2vvt_A	290	Glutamate racemase; isomerase, peptidoglycan synth	99.89
3uhf_A	274	Glutamate racemase; structural genomics, center fo	99.88
2jfq_A	286	Glutamate racemase; cell WALL, isomerase, cell sha	99.87
3out_A	268	Glutamate racemase; structural genomics, center fo	99.86
3ist_A	269	Glutamate racemase; structural genomics, cell WALL	99.86
2gzm_A	267	Glutamate racemase; enzyme, isomerase; HET: DGL; 1	99.83
1zuw_A	272	Glutamate racemase 1; (R)-glutamate, peptidoglycan	99.83
1b73_A	254	Glutamate racemase; isomerase; 2.30A {Aquifex pyro	99.82
2dwu_A	276	Glutamate racemase; isomerase; HET: DGL; 1.60A {Ba	99.81
2jfz_A	255	Glutamate racemase; cell WALL, isomerase, cell sha	99.8
2jfn_A	285	Glutamate racemase; cell WALL, isomerase, cell sha	99.79
2xed_A	273	Putative maleate isomerase; nicotinic acid catabol	99.57
3qvl_A	245	Putative hydantoin racemase; isomerase; HET: 5HY;	99.54
2dgd_A	223	223AA long hypothetical arylmalonate decarboxylas;	99.53
2eq5_A	228	228AA long hypothetical hydantoin racemase; struct	99.42
3ixl_A	240	Amdase, arylmalonate decarboxylase; enantioselecti	99.37
2qh8_A	302	Uncharacterized protein; conserved domain protein,	96.92
3out_A	268	Glutamate racemase; structural genomics, center fo	96.77
3qvl_A	245	Putative hydantoin racemase; isomerase; HET: 5HY;	96.69
2gzm_A	267	Glutamate racemase; enzyme, isomerase; HET: DGL; 1	96.65
1zuw_A	272	Glutamate racemase 1; (R)-glutamate, peptidoglycan	96.55
2dwu_A	276	Glutamate racemase; isomerase; HET: DGL; 1.60A {Ba	96.43
2jfq_A	286	Glutamate racemase; cell WALL, isomerase, cell sha	96.41
2vvt_A	290	Glutamate racemase; isomerase, peptidoglycan synth	96.11
3lft_A	295	Uncharacterized protein; ABC, ATPase, cassette, L-	95.99
3ist_A	269	Glutamate racemase; structural genomics, cell WALL	95.62
2oho_A	273	Glutamate racemase; isomerase; 2.25A {Streptococcu	95.24
2jfz_A	255	Glutamate racemase; cell WALL, isomerase, cell sha	95.17
3o74_A	272	Fructose transport system repressor FRUR; dual tra	95.08
3c3k_A	285	Alanine racemase; structural genomics, protein str	94.94
1jfl_A	228	Aspartate racemase; alpha-beta structure, HOMO-dim	94.84
1dbq_A	289	Purine repressor; transcription regulation, DNA-bi	94.79
2dgd_A	223	223AA long hypothetical arylmalonate decarboxylas;	94.77
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	94.67
3e61_A	277	Putative transcriptional repressor of ribose OPER;	94.64
3tb6_A	298	Arabinose metabolism transcriptional repressor; tr	94.62
2eq5_A	228	228AA long hypothetical hydantoin racemase; struct	94.55
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	94.43
2fep_A	289	Catabolite control protein A; CCPA, transcriptiona	94.38
3hcw_A	295	Maltose operon transcriptional repressor; RNA-bind	94.34
1qpz_A	340	PURA, protein (purine nucleotide synthesis repress	94.34
3uhf_A	274	Glutamate racemase; structural genomics, center fo	94.3
3kke_A	303	LACI family transcriptional regulator; structural	94.3
1b73_A	254	Glutamate racemase; isomerase; 2.30A {Aquifex pyro	94.21
3brq_A	296	HTH-type transcriptional regulator ASCG; transcrip	94.16
2xed_A	273	Putative maleate isomerase; nicotinic acid catabol	94.07
2rgy_A	290	Transcriptional regulator, LACI family; 11011J, NY	93.95
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	93.92
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	93.91
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	93.78
3egc_A	291	Putative ribose operon repressor; structural genom	93.77
2jfn_A	285	Glutamate racemase; cell WALL, isomerase, cell sha	93.76
3dbi_A	338	Sugar-binding transcriptional regulator, LACI FAM;	93.75
3ipc_A	356	ABC transporter, substrate binding protein (amino;	93.66
3td9_A	366	Branched chain amino acid ABC transporter, peripl	93.66
3k9c_A	289	Transcriptional regulator, LACI family protein; PS	93.66
3ixl_A	240	Amdase, arylmalonate decarboxylase; enantioselecti	93.59
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	93.49
3d8u_A	275	PURR transcriptional regulator; APC91343.1, vibrio	93.34
3snr_A	362	Extracellular ligand-binding receptor; structural	93.21
3h5o_A	339	Transcriptional regulator GNTR; transcription regu	93.19
3e3m_A	355	Transcriptional regulator, LACI family; structural	93.19
3bbl_A	287	Regulatory protein of LACI family; protein structu	93.18
3k4h_A	292	Putative transcriptional regulator; structural gen	93.17
3gv0_A	288	Transcriptional regulator, LACI family; transcript	93.03
3huu_A	305	Transcription regulator like protein; PSI-II, NYSG	93.03
3hut_A	358	Putative branched-chain amino acid ABC transporter	92.68
2o20_A	332	Catabolite control protein A; CCPA, transcriptiona	92.55
2h3h_A	313	Sugar ABC transporter, periplasmic sugar-binding p	92.5
1byk_A	255	Protein (trehalose operon repressor); LACI family,	92.43
3clk_A	290	Transcription regulator; 11017J, PSI-II, NYSGXRC,	92.42
3s81_A	268	Putative aspartate racemase; structural genomics,	92.4
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	92.35
2iks_A	293	DNA-binding transcriptional dual regulator; escher	92.3
4eyg_A	368	Twin-arginine translocation pathway signal; PSI-bi	92.19
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	92.13
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	92.11
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	91.93
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	91.69
2fvy_A	309	D-galactose-binding periplasmic protein; periplasm	91.69
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	91.66
2qu7_A	288	Putative transcriptional regulator; structural gen	91.6
3gbv_A	304	Putative LACI-family transcriptional regulator; NY	91.55
4evq_A	375	Putative ABC transporter subunit, substrate-bindi	91.47
3sg0_A	386	Extracellular ligand-binding receptor; structural	91.35
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	91.3
3bil_A	348	Probable LACI-family transcriptional regulator; st	91.3
3eaf_A	391	ABC transporter, substrate binding protein; PSI2,	91.24
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	91.2
3lkb_A	392	Probable branched-chain amino acid ABC transporter	91.18
3lop_A	364	Substrate binding periplasmic protein; protein str	91.16
3o1i_D	304	Periplasmic protein TORT; ligand free, two compone	90.92
3kjx_A	344	Transcriptional regulator, LACI family; LACL famil	90.84
2x7x_A	325	Sensor protein; transferase, sensor histidine kina	90.53
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	90.1
2rjo_A	332	Twin-arginine translocation pathway signal protei;	89.97
3brs_A	289	Periplasmic binding protein/LACI transcriptional;	89.93
3n0w_A	379	ABC branched chain amino acid family transporter,	89.89
3i09_A	375	Periplasmic branched-chain amino acid-binding Pro;	89.77
2vk2_A	306	YTFQ, ABC transporter periplasmic-binding protein	89.68
1jye_A	349	Lactose operon repressor; gene regulation, protein	88.73
2ioy_A	283	Periplasmic sugar-binding protein; ribose binding	87.69
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	87.63
3ojc_A	231	Putative aspartate/glutamate racemase; structural	87.47
3i45_A	387	Twin-arginine translocation pathway signal protei;	87.41
2dri_A	271	D-ribose-binding protein; sugar transport; HET: RI	87.36
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	87.13
2zsk_A	226	PH1733, 226AA long hypothetical aspartate racemase	87.11
3ctp_A	330	Periplasmic binding protein/LACI transcriptional;	86.77
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	86.65
2hsg_A	332	Glucose-resistance amylase regulator; CCPA, transc	86.47
4fe7_A	412	Xylose operon regulatory protein; HTH_ARAC, helix-	86.38
3hs3_A	277	Ribose operon repressor; PSI-II, NYSGXRC, periplas	86.31
3jvd_A	333	Transcriptional regulators; structural genomics, P	85.62
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	85.44
3h5t_A	366	Transcriptional regulator, LACI family; DNA-depend	85.11
3miz_A	301	Putative transcriptional regulator protein, LACI f	84.56
1usg_A	346	Leucine-specific binding protein; leucine-binding	83.59
3ksm_A	276	ABC-type sugar transport system, periplasmic COMP;	83.18
3qk7_A	294	Transcriptional regulators; structural genomics, N	82.91
2fn9_A	290	Ribose ABC transporter, periplasmic ribose-bindin;	82.58
3uug_A	330	Multiple sugar-binding periplasmic receptor CHVE;	81.82
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	81.59
3cs3_A	277	Sugar-binding transcriptional regulator, LACI FAM;	81.34
1jx6_A	342	LUXP protein; protein-ligand complex, signaling pr	80.59

>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}

Probab=100.00  E-value=1e-36  Score=266.93  Aligned_cols=139  Identities=23%  Similarity=0.406  Sum_probs=121.4

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC----CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE----NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d----~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      ||+|||||||||+||++||++|++.++++    ++++++++|.+ +++           ....+   ..++|+++.+++.
T Consensus         2 mk~iGilGGmg~~at~~~~~~i~~~~~~~~~~~h~~~~~~~s~~-~~~-----------~~~~~---~~~~~~~~~~~l~   66 (231)
T 3ojc_A            2 MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVD-FHE-----------IEQLQ---AKGDWQTAAQLLS   66 (231)
T ss_dssp             CCCEEEEECTTHHHHHHHHHHHHHHHHHHHCTTCCCCEEEEECC-HHH-----------HHHHH---HTTCHHHHHHHHH
T ss_pred             CCeEEEEccCCHHHHHHHHHHHHHHhHHhcCCCCCccceeeCCC-hhh-----------HHHHH---HCCChhHHHHHHH
Confidence            89999999999999999999999999963    44678888843 222           11111   3568999999999


Q ss_pred             HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHH
Q 026201          156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEK  235 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~  235 (241)
                      +.+++|+++|||+|||||||+|++++++++.+++||+||++++++++++.+.+        |||||||++|+++++|++.
T Consensus        67 ~~~~~L~~~g~~~iviaCNTa~~~~~~l~~~~~iPvi~i~~~~~~~a~~~~~~--------rVgvLaT~~T~~s~~y~~~  138 (231)
T 3ojc_A           67 NAAISLKHAGAEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGID--------KIGLLGTRYTMEQGFYRGR  138 (231)
T ss_dssp             HHHHHHHHHTCCEEEECSSGGGGGHHHHHHHHCSCBCCHHHHHHHHHHHTTCC--------EEEEESCHHHHHSTTTHHH
T ss_pred             HHHHHHHhcCCCEEEEeCCchHHHHHHHHHhCCCCEeccHHHHHHHHHHcCCC--------EEEEEcCHHHhhchHHHHH
Confidence            99999999999999999999999999999999999999999999999886544        9999999999999999999


Q ss_pred             HHhc-CC
Q 026201          236 LQHE-DC  241 (241)
Q Consensus       236 L~~~-G~  241 (241)
                      |++. |+
T Consensus       139 l~~~~g~  145 (231)
T 3ojc_A          139 LTEKHGI  145 (231)
T ss_dssp             HHHTTCC
T ss_pred             HHhcCCC
Confidence            9987 74

>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A

Probab=100.00  E-value=1.4e-34  Score=259.10  Aligned_cols=135  Identities=31%  Similarity=0.562  Sum_probs=118.4

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchH---HhhhcCCChhhhhcccCCCCCCCHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNK---ELLSHDRSSFSSLNCKGGGVQLDDSLIVEN  153 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d---~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~  153 (241)
                      ||+|||||||||+||++|||+|++.+++.   +|+|++++|+|++++   ++..++.++                  .+.
T Consensus        26 ~k~IGiiGGmg~~aT~~~~~~i~~~~~~~~D~~h~p~~~~s~~~i~~r~~~~~~~g~~~------------------~~~   87 (268)
T 3s81_A           26 KHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSP------------------YRY   87 (268)
T ss_dssp             CCCEEEECCSSHHHHHHHHHHHHHHSCCSSGGGSCCEEEEECTTSCCHHHHHHHCCCCS------------------HHH
T ss_pred             CCcEEEEecCCHHHHHHHHHHHHHhhHhhcCCCCCCEEEeccCCHHHHHHHHHhCCchH------------------HHH
Confidence            89999999999999999999999999964   899999999999875   344443333                  334


Q ss_pred             HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHH
Q 026201          154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ  233 (241)
Q Consensus       154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~  233 (241)
                      +.+.+++|+++|||+|||||||+|++++++++.+++|||||+++++++++ .+        .+|||||||++|+++++|+
T Consensus        88 l~~~~~~L~~~Gad~IVIaCNTah~~l~~lr~~~~iPvigiiea~~~aa~-~~--------~~rVgVLaT~~T~~s~~y~  158 (268)
T 3s81_A           88 LERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIP-PS--------ARHVGLLATNATLATGLYQ  158 (268)
T ss_dssp             HHHHHHHHHHTTCSEEECSCSGGGGGHHHHHHHCSSEEECHHHHHHHTSC-TT--------CCEEEEECCHHHHHTTTTH
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHCCCCEEcccHHHHHHHH-hc--------CCcEEEEechHHhhHHHHH
Confidence            67788999999999999999999999999999999999999999998776 33        3499999999999999999


Q ss_pred             HHHHhcCC
Q 026201          234 EKLQHEDC  241 (241)
Q Consensus       234 ~~L~~~G~  241 (241)
                      +.|++.|+
T Consensus       159 ~~l~~~g~  166 (268)
T 3s81_A          159 KKALARGL  166 (268)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHcCC
Confidence            99998874

>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A

Probab=100.00  E-value=7e-34  Score=246.41  Aligned_cols=139  Identities=23%  Similarity=0.400  Sum_probs=121.3

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      ||+|||||||||+||++||++|++.+++.   +|++++++|+|+++++..-           +    ..+|+...+.+.+
T Consensus         1 m~~iGiiGGmg~~at~~~~~~i~~~~~~~~d~~~~~~~~~~~~~i~~r~~~-----------~----~~~~~~~~~~l~~   65 (228)
T 1jfl_A            1 MKTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAY-----------I----LGKGEDPRPQLIW   65 (228)
T ss_dssp             CCCEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCCHHHH-----------H----TTSSCCCHHHHHH
T ss_pred             CCeEEEecccCHHHHHHHHHHHHHHHHhhcCCccCcEeEEeCCCHHHHHHH-----------H----HcCCchHHHHHHH
Confidence            78999999999999999999999999854   8999999999988764210           0    0135556677888


Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHH
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL  236 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L  236 (241)
                      .+++|++.|||+|||||||+|.+++++++.+++|++||++++++.+.+.+.+        |||||||++|+++++|++.|
T Consensus        66 ~~~~l~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i~~~~~~~a~~~~~~--------rigvlaT~~T~~~~~y~~~l  137 (228)
T 1jfl_A           66 TAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGFK--------KAGLLATTGTIVSGVYEKEF  137 (228)
T ss_dssp             HHHHHHHHTCSEEECSCTGGGGGHHHHHHHCSSCBCCHHHHHHHHHHHTTCS--------EEEEECCHHHHHHTHHHHHH
T ss_pred             HHHHHHHcCCCEEEEcCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCCC--------eEEEEecHHHhhhhHHHHHH
Confidence            8999999999999999999999999999999999999999999998775433        99999999999999999999


Q ss_pred             HhcCC
Q 026201          237 QHEDC  241 (241)
Q Consensus       237 ~~~G~  241 (241)
                      ++.|+
T Consensus       138 ~~~g~  142 (228)
T 1jfl_A          138 SKYGV  142 (228)
T ss_dssp             HHTTC
T ss_pred             HHCCC
Confidence            98874

>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.2e-33  Score=244.84  Aligned_cols=138  Identities=25%  Similarity=0.377  Sum_probs=119.5

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhcc--C-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGE--E-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~--d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      ||+|||||||||+||++||++|++.+++  + +|.+.++.+.+.+++. ..               ...+|+.+.+.+.+
T Consensus         1 m~~iGiiGGmgp~at~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~-~~---------------~~~~~~~~~~~l~~   64 (226)
T 2zsk_A            1 MKKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEF-FQ---------------NPEGWEGRKKILIN   64 (226)
T ss_dssp             CCCEEEEECSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEEEECCTHHH-HT---------------CTTHHHHHHHHHHH
T ss_pred             CCeEEEecccCHHHHHHHHHHHHHHHHHhcCCccCCeeEEeCCCHHHH-Hh---------------hcCCcchHHHHHHH
Confidence            6899999999999999999999999985  3 6665555555666654 11               12348999999999


Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHH
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL  236 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L  236 (241)
                      .+++|++.|||+|||||||+|.+++++++.+++|++||++++++++++.+.+        |||||||++|+++++|++.+
T Consensus        65 ~~~~L~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i~~a~~~~~~~~~~~--------rigvlaT~~T~~~~~y~~~l  136 (226)
T 2zsk_A           65 AAKALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEILKRGVR--------KVLLLGTKTTMTADFYIKTL  136 (226)
T ss_dssp             HHHHHHHHTCSEEEESSSGGGGGHHHHHHHCSSCBCCHHHHHHHHHHHTTCC--------EEEEESSTTTTSCHHHHHHH
T ss_pred             HHHHHHHcCCCEEEECCCcHHHHHHHHHHhCCCCEeccHHHHHHHHHHcCCC--------eEEEEeCHHHHhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999775443        99999999999999999999


Q ss_pred             HhcCC
Q 026201          237 QHEDC  241 (241)
Q Consensus       237 ~~~G~  241 (241)
                      ++.|+
T Consensus       137 ~~~g~  141 (226)
T 2zsk_A          137 EEKGL  141 (226)
T ss_dssp             HTTTC
T ss_pred             HHCCC
Confidence            98875

>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*

Probab=99.89  E-value=7.1e-23  Score=182.68  Aligned_cols=135  Identities=18%  Similarity=0.235  Sum_probs=110.2

Q ss_pred             chhhccCCeEEEE-eCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHH
Q 026201           74 DALLNQANTVGIV-GGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVE  152 (241)
Q Consensus        74 ~~~~~~~k~IGII-GGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~  152 (241)
                      +++|+..++|||+ ||||+   +.++++|.+..+..   .++-+.|...           .|+       ...+++.+.+
T Consensus         6 ~~~~~~~~~IGv~DsG~Gg---ltv~~~i~~~~P~~---~~iy~~D~~~-----------~Py-------g~~s~~~i~~   61 (273)
T 2oho_A            6 GSHMMDTRPIGFLDSGVGG---LTVVCELIRQLPHE---KIVYIGDSAR-----------APY-------GPRPKKQIKE   61 (273)
T ss_dssp             SSCBCCCCCEEEEESSSTT---HHHHHHHHHHCTTC---CEEEEECGGG-----------CCC-------TTSCHHHHHH
T ss_pred             cccccCCCcEEEEeCCCcH---HHHHHHHHHHCCCC---CEEEEeCCCC-----------CCC-------CCCCHHHHHH
Confidence            3455334689999 99998   47999999999876   2444454421           111       3456788999


Q ss_pred             HHHHHHHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhh
Q 026201          153 NLRRKRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGF  231 (241)
Q Consensus       153 ~l~~~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~  231 (241)
                      .+.+.+++|++.|||+|||||||+|.+ ++++++.+++||++|++++++.+.+..       +++|||||||++|+++++
T Consensus        62 ~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~epa~~~A~~~~-------~~~rIgVlaT~~T~~~~~  134 (273)
T 2oho_A           62 YTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKST-------TKGQVGVIGTPMTVASDI  134 (273)
T ss_dssp             HHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHC-------SSSEEEEEECHHHHHHTH
T ss_pred             HHHHHHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEeccHHHHHHHHHhc-------CCCeEEEEECchhhcchH
Confidence            999999999999999999999999965 799999999999999999998877641       244999999999999999


Q ss_pred             HHHHHHhc
Q 026201          232 YQEKLQHE  239 (241)
Q Consensus       232 Y~~~L~~~  239 (241)
                      |++.+++.
T Consensus       135 y~~~l~~~  142 (273)
T 2oho_A          135 YRKKIQLL  142 (273)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999887

>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*

Probab=99.89  E-value=8e-23  Score=184.20  Aligned_cols=137  Identities=15%  Similarity=0.233  Sum_probs=111.3

Q ss_pred             cchhhccCCeEEEE-eCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHH
Q 026201           73 SDALLNQANTVGIV-GGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIV  151 (241)
Q Consensus        73 ~~~~~~~~k~IGII-GGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~  151 (241)
                      ++++|+..++|||+ ||||+   +.+|++|++..+.+   .++-+.|..           ..|+       ...+|+++.
T Consensus        17 ~~~~~~~~~~IGvfDsG~Gg---ltv~~~i~~~~P~~---~~iy~~D~~-----------~~py-------G~~s~~~i~   72 (290)
T 2vvt_A           17 RGSHMSNQEAIGLIDSGVGG---LTVLKEALKQLPNE---RLIYLGDTA-----------RCPY-------GPRPAEQVV   72 (290)
T ss_dssp             TSSCCGGGSCEEEEESSSTT---HHHHHHHHHHCTTS---CEEEEECTT-----------TCCC-------TTSCHHHHH
T ss_pred             CCccccCCCcEEEEeCCCcH---HHHHHHHHHHCCCc---cEEEecccc-----------cCCC-------CCCCHHHHH
Confidence            55666445689999 99998   47999999999876   122222221           1111       356789999


Q ss_pred             HHHHHHHHHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhh
Q 026201          152 ENLRRKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAG  230 (241)
Q Consensus       152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~  230 (241)
                      +++.+.+++|++.|||+|||||||+|. +++++++.+++||++|++++++.+.+..       .++|||||||++|++++
T Consensus        73 ~~~~~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigiiepa~~~A~~~~-------~~~rIgVLaT~~T~~s~  145 (290)
T 2vvt_A           73 QFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVT-------KNNKIGVIGTLGTIKSA  145 (290)
T ss_dssp             HHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESSHHHHHHHHHHC-------SSSEEEEEECHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEcccHHHHHHHHHhc-------CCCEEEEEeCcHhhhhH
Confidence            999999999999999999999999995 5899999999999999999999887531       24599999999999999


Q ss_pred             hHHHHHHhcC
Q 026201          231 FYQEKLQHED  240 (241)
Q Consensus       231 ~Y~~~L~~~G  240 (241)
                      +|++.+++.|
T Consensus       146 ~y~~~l~~~~  155 (290)
T 2vvt_A          146 SYEIAIKSKA  155 (290)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHhC
Confidence            9999998864

>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A

Probab=99.88  E-value=3.2e-22  Score=179.91  Aligned_cols=139  Identities=16%  Similarity=0.207  Sum_probs=110.9

Q ss_pred             cchhhc-cCCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHH
Q 026201           73 SDALLN-QANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLI  150 (241)
Q Consensus        73 ~~~~~~-~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i  150 (241)
                      -+.+|+ ....|||+. |+|.+   ..++.|.+..+..   +++-+.|..           .+|+       .+.+|+++
T Consensus        16 ~~~~~~~~~~~IgvfDSGvGGL---tv~~~i~~~lP~e---~~iy~~D~a-----------~~PY-------G~ks~e~i   71 (274)
T 3uhf_A           16 ENLYFQSNAMKIGVFDSGVGGL---SVLKSLYEARLFD---EIIYYGDTA-----------RVPY-------GVKDKDTI   71 (274)
T ss_dssp             -CCCCCCSCCEEEEEESSSTTH---HHHHHHHHTTCCS---EEEEEECTT-----------TCCC-------TTSCHHHH
T ss_pred             ceeeccCCCCeEEEEECCCChH---HHHHHHHHHCCCC---CEEEEecCC-----------CCCC-------CCCCHHHH
Confidence            345553 345899999 99999   5667777777654   333333221           2222       57899999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhh
Q 026201          151 VENLRRKRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTA  229 (241)
Q Consensus       151 ~~~l~~~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s  229 (241)
                      .+++.+++++|+++|||+|||||||+|.+ ++++++.+++|||+|+|++++.+.+...     ++++|||||||++|+++
T Consensus        72 ~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigiiepa~~~a~~~~~-----t~~~~IGVLaT~~Ti~s  146 (274)
T 3uhf_A           72 IKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALH-----DKNKEILVIATKATIKS  146 (274)
T ss_dssp             HHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECSHHHHHHHHHHHHC-----CTTSCEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcCCHHHHHHHHHhcc-----cCCCeEEEEeccccccH
Confidence            99999999999999999999999999987 7999999999999999999999887510     12449999999999999


Q ss_pred             hhHHHHHHhcC
Q 026201          230 GFYQEKLQHED  240 (241)
Q Consensus       230 ~~Y~~~L~~~G  240 (241)
                      ++|++.|++.|
T Consensus       147 ~~Y~~~l~~~~  157 (274)
T 3uhf_A          147 EEYQKRLLSQG  157 (274)
T ss_dssp             THHHHHHHTTT
T ss_pred             HHHHHHHHHcC
Confidence            99999998765

>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}

Probab=99.87  E-value=1.2e-21  Score=176.21  Aligned_cols=133  Identities=12%  Similarity=0.141  Sum_probs=107.0

Q ss_pred             chhhccCCeEEEE-eCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHH
Q 026201           74 DALLNQANTVGIV-GGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVE  152 (241)
Q Consensus        74 ~~~~~~~k~IGII-GGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~  152 (241)
                      ..+|  .++|||+ +|||   ++.++++|.+..+.+   .++-+.|..           ..|+       ...+++++.+
T Consensus        18 ~~~m--~~~IGvfDsG~G---gltv~~~i~~~~P~~---~~iy~~D~~-----------~~Py-------g~~s~~~i~~   71 (286)
T 2jfq_A           18 GSHM--NKPIGVIDSGVG---GLTVAKEIMRQLPNE---TIYYLGDIG-----------RCPY-------GPRPGEQVKQ   71 (286)
T ss_dssp             ---C--CSCEEEEESSST---THHHHHHHHHHCTTC---CEEEEECTT-----------TCCC-------TTSCHHHHHH
T ss_pred             cccc--CCcEEEEeCCCC---cHHHHHHHHHHCCCc---cEEEeccCC-----------CCCc-------CCCCHHHHHH
Confidence            3455  2589999 9999   779999999998876   222222221           1111       3567889999


Q ss_pred             HHHHHHHHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhh
Q 026201          153 NLRRKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGF  231 (241)
Q Consensus       153 ~l~~~~~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~  231 (241)
                      ++.+.+++|++.|||+|||||||+|. +++++++.+++||++|++++++.+.+..       .++|||||||++|+++++
T Consensus        72 ~~~~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi~e~a~~~A~~~~-------~~~rIgVLaT~~T~~~~~  144 (286)
T 2jfq_A           72 YTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPGARTAIMTT-------RNQNVLVLGTEGTIKSEA  144 (286)
T ss_dssp             HHHHHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEESHHHHHHHHHHHC-------SSSEEEEEECHHHHHHTH
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEeccHHHHHHHHHhc-------CCCEEEEEeChHHhcchH
Confidence            99999999999999999999999996 6899999999999999999998877631       244999999999999999


Q ss_pred             HHHHHHhc
Q 026201          232 YQEKLQHE  239 (241)
Q Consensus       232 Y~~~L~~~  239 (241)
                      |++.+++.
T Consensus       145 y~~~l~~~  152 (286)
T 2jfq_A          145 YRTHIKRI  152 (286)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999876

>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}

Probab=99.86  E-value=1.5e-21  Score=174.67  Aligned_cols=130  Identities=15%  Similarity=0.232  Sum_probs=105.4

Q ss_pred             hccCCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           77 LNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        77 ~~~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      |+..+.|||+. |+|.+   ..++.|.+..+..   +++-+.|..           .+|+       ...+|+++.+++.
T Consensus         4 ~~~~~pIgvfDSGvGGL---tv~~~i~~~lp~~---~~iy~~D~a-----------~~PY-------G~~~~~~i~~~~~   59 (268)
T 3out_A            4 MLDNRPIGVFDSGIGGL---TIVKNLMSILPNE---DIIYFGDIA-----------RIPY-------GTKSRATIQKFAA   59 (268)
T ss_dssp             -CTTSCEEEEESSSTTH---HHHHHHHHHCTTC---CEEEEECTT-----------TCCC-------TTSCHHHHHHHHH
T ss_pred             cCCCCcEEEEECCCChH---HHHHHHHHHCCCC---cEEEecCCC-----------CCCC-------CCCCHHHHHHHHH
Confidence            54566899999 99999   4556666666654   344434321           1222       5789999999999


Q ss_pred             HHHHHHHHhCCcEEEEeCCchhh-hHHHHhccC-CCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHH
Q 026201          156 RKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGC-SVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ  233 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~-~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~  233 (241)
                      +.+++|+++|||+|||||||+|. +++++++.+ ++|||||++++++.  ..        .++|||||||++|+++++|+
T Consensus        60 ~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvigiiep~~~~--~~--------~~~~IGVLaT~~Ti~s~~y~  129 (268)
T 3out_A           60 QTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVIDVITAGVSL--VD--------NLNTVGVIATPATINSNAYA  129 (268)
T ss_dssp             HHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEEHHHHHHHT--TT--------TCSEEEEEECHHHHHHTHHH
T ss_pred             HHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEeccHHHHHH--hc--------cCCeEEEEecCcccccHHHH
Confidence            99999999999999999999998 569999999 99999999999987  22        34599999999999999999


Q ss_pred             HHHHhcC
Q 026201          234 EKLQHED  240 (241)
Q Consensus       234 ~~L~~~G  240 (241)
                      +.+++.|
T Consensus       130 ~~l~~~~  136 (268)
T 3out_A          130 LQIHKKN  136 (268)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998875

>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*

Probab=99.86  E-value=7.5e-21  Score=170.28  Aligned_cols=130  Identities=15%  Similarity=0.210  Sum_probs=105.9

Q ss_pred             CCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        80 ~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      .+.|||+. |+|.+   -.++.|.+..+..   +++-+-|..           .+|+       .+...+++.+++.+.+
T Consensus         5 ~~~IgvfDSGvGGl---tv~~~i~~~lP~~---~~iy~~D~a-----------~~PY-------G~ks~~~i~~~~~~~~   60 (269)
T 3ist_A            5 KQAIGFIDSGVGGL---TVVREVLKQLPHE---QVYYLGDTA-----------RCPY-------GPRDKEEVAKFTWEMT   60 (269)
T ss_dssp             CCCEEEEESSSTTH---HHHHHHHHHCTTC---CEEEEECGG-----------GCCC-------TTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCccHH---HHHHHHHHHCCCC---cEEEEeCCC-----------CCCC-------CCCCHHHHHHHHHHHH
Confidence            45799999 99999   6778888877765   333333221           1222       5667889999999999


Q ss_pred             HHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHH
Q 026201          159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ  237 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~  237 (241)
                      ++|+++|||+|||||||+|++ ++++++.+++|||||++++++.+.+..       +++|||||||++|+++++|++.++
T Consensus        61 ~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvigii~pa~~~A~~~~-------~~~~IGVLaT~~Ti~s~~y~~~i~  133 (269)
T 3ist_A           61 NFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKAT-------RNNKIGVLGTLGTVESMAYPTALK  133 (269)
T ss_dssp             HHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHC-------SSSEEEEEECHHHHHHTHHHHHHH
T ss_pred             HHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEeecHHHHHHHHHHc-------CCCeEEEEeccchhhHHHHHHHHH
Confidence            999999999999999999995 899999999999999998888655431       245999999999999999999998


Q ss_pred             hcC
Q 026201          238 HED  240 (241)
Q Consensus       238 ~~G  240 (241)
                      +.|
T Consensus       134 ~~~  136 (269)
T 3ist_A          134 GLN  136 (269)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            865

>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}

Probab=99.83  E-value=5.2e-20  Score=163.66  Aligned_cols=128  Identities=13%  Similarity=0.224  Sum_probs=105.9

Q ss_pred             CeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           81 NTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        81 k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      +.|||+. |+|.+   .++++|.+..+..   .++-+.|..           ..|+       ...+++++.+++.+.++
T Consensus         4 ~~IgvfDSGvGGl---tv~~~i~~~lP~~---~~iy~~D~~-----------~~Py-------g~~s~~~i~~~~~~~~~   59 (267)
T 2gzm_A            4 RAIGVIDSGVGGL---TVAKELIRQLPKE---RIIYLGDTA-----------RCPY-------GPRSREEVRQFTWEMTE   59 (267)
T ss_dssp             SCEEEEESSSTTH---HHHHHHHHHCTTS---CEEEEECTT-----------TCCC-------TTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCccHH---HHHHHHHHHCCCC---CEEEecCCC-----------CCCC-------CCCCHHHHHHHHHHHHH
Confidence            3799996 99987   7889999998865   223223221           1111       35678899999999999


Q ss_pred             HHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHh
Q 026201          160 FLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH  238 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~  238 (241)
                      +|++.|||+|||||||+|. +++++++.+++||++|++++++.+.+..       +++|||||||++|+++++|++.+++
T Consensus        60 ~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~ep~~~~A~~~~-------~~~rIgVlaT~~T~~~~~y~~~l~~  132 (267)
T 2gzm_A           60 HLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTALKVT-------NTYHVGIIGTIGTVKSGAYEEALKS  132 (267)
T ss_dssp             HHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHC-------SSCEEEEEECHHHHHHTHHHHHHHH
T ss_pred             HHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeecHHHHHHHHHcc-------CCCEEEEEEChHHhccHHHHHHHHH
Confidence            9999999999999999996 7899999999999999999999887641       2449999999999999999999998


Q ss_pred             c
Q 026201          239 E  239 (241)
Q Consensus       239 ~  239 (241)
                      .
T Consensus       133 ~  133 (267)
T 2gzm_A          133 I  133 (267)
T ss_dssp             H
T ss_pred             h
Confidence            7

>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}

Probab=99.83  E-value=6.1e-20  Score=163.89  Aligned_cols=128  Identities=13%  Similarity=0.243  Sum_probs=105.7

Q ss_pred             CeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           81 NTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        81 k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      +.|||+. |+|.+   .++++|.+..+..   .++-+.|..           ..|+       ...+++++.+++.+.++
T Consensus         4 ~~IgvfDSGvGGl---tv~~~i~~~lP~~---~~iy~~D~~-----------~~Py-------G~~s~~~i~~~~~~~~~   59 (272)
T 1zuw_A            4 QPIGVIDSGVGGL---TVAKEIMRQLPKE---NIIYVGDTK-----------RCPY-------GPRPEEEVLQYTWELTN   59 (272)
T ss_dssp             SCEEEEESSSTTH---HHHHHHHHHSTTC---CEEEEECGG-----------GCCC-------SSSCHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCcchH---HHHHHHHHhCCCC---cEEEeccCC-----------CCCC-------CCCCHHHHHHHHHHHHH
Confidence            4799995 99976   7899999998876   233333322           1111       45678899999999999


Q ss_pred             HHHH-hCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHH
Q 026201          160 FLEK-AGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ  237 (241)
Q Consensus       160 ~Le~-~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~  237 (241)
                      +|++ .|||+|||||||+|. +++++++.+++||++|++++++.+.+..       .++|||||||++|+++++|++.++
T Consensus        60 ~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigiiepa~~~A~~~~-------~~~rIgVlaT~~T~~s~~y~~~i~  132 (272)
T 1zuw_A           60 YLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVIQPGARAAIKVT-------DNQHIGVIGTENTIKSNAYEEALL  132 (272)
T ss_dssp             HHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHC-------SSSEEEEEECHHHHHTTHHHHHHH
T ss_pred             HHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcccHHHHHHHHHhc-------CCCEEEEEEChhhhhhhHHHHHHH
Confidence            9999 999999999999997 6899999999999999999998877631       245999999999999999999998


Q ss_pred             hc
Q 026201          238 HE  239 (241)
Q Consensus       238 ~~  239 (241)
                      +.
T Consensus       133 ~~  134 (272)
T 1zuw_A          133 AL  134 (272)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*

Probab=99.82  E-value=9.9e-20  Score=160.46  Aligned_cols=129  Identities=22%  Similarity=0.270  Sum_probs=105.7

Q ss_pred             eEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHH
Q 026201           82 TVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF  160 (241)
Q Consensus        82 ~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~  160 (241)
                      +|||+. |+|..   .++++|.+..+..   .++-+.|..           ..|+       ...+++.+.+.+.+.+++
T Consensus         2 ~IgvfDSG~Ggl---tv~~~l~~~~P~~---~~iy~~D~~-----------~~py-------G~~s~~~i~~~~~~~~~~   57 (254)
T 1b73_A            2 KIGIFDSGVGGL---TVLKAIRNRYRKV---DIVYLGDTA-----------RVPY-------GIRSKDTIIRYSLECAGF   57 (254)
T ss_dssp             EEEEEESSSGGG---THHHHHHHHSTTC---EEEEEECTT-----------TCCC-------TTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCccHH---HHHHHHHHhCCCC---cEEEeecCC-----------CCCC-------CcCCHHHHHHHHHHHHHH
Confidence            699996 99977   7999999998865   233223332           1111       355788899999999999


Q ss_pred             HHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHhc
Q 026201          161 LEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE  239 (241)
Q Consensus       161 Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~~  239 (241)
                      |++.|||+|||||||+|. +++++++.+++|+++|++++++.+.+..       .++|||||||++|+++++|++.+++.
T Consensus        58 L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~e~~~~~A~~~~-------~~~rigVlaT~~T~~~~~y~~~l~~~  130 (254)
T 1b73_A           58 LKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKS-------RNKKIGVIGTPATVKSGAYQRKLEEG  130 (254)
T ss_dssp             HHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESHHHHHHHHHHHC-------SSCEEEEEECHHHHHHCHHHHHHHTT
T ss_pred             HHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHHHHHHHHHcc-------CCCEEEEEEChHHhhhHHHHHHHHcC
Confidence            999999999999999994 7999999999999999999999877641       23499999999999999999999876


Q ss_pred             CC
Q 026201          240 DC  241 (241)
Q Consensus       240 G~  241 (241)
                      |+
T Consensus       131 g~  132 (254)
T 1b73_A          131 GA  132 (254)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}

Probab=99.81  E-value=1.6e-19  Score=161.31  Aligned_cols=129  Identities=14%  Similarity=0.202  Sum_probs=106.3

Q ss_pred             CeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           81 NTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        81 k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      +.|||+. |+|.+   .++++|.+..+.+   .++-+.|...           .|+       ...+++++.+++.+.++
T Consensus         8 ~~IgvfDSGvGGl---tv~~~i~~~lP~~---~~iy~~D~~~-----------~Py-------G~~s~~~i~~~~~~~~~   63 (276)
T 2dwu_A            8 SVIGVLDSGVGGL---TVASEIIRQLPKE---SICYIGDNER-----------CPY-------GPRSVEEVQSFVFEMVE   63 (276)
T ss_dssp             CEEEEEESSSTTH---HHHHHHHHHCTTS---CEEEEECGGG-----------CCC-------TTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCcchH---HHHHHHHHhCCCC---cEEEccCCCC-----------CCC-------CCCCHHHHHHHHHHHHH
Confidence            4899995 99977   7889999998876   2333343321           111       45678999999999999


Q ss_pred             HHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHh
Q 026201          160 FLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH  238 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~  238 (241)
                      +|++.|||+|||||||+|. +++++++.+++||++|++++++.+.+..       .++|||||||++|+++++|++.+++
T Consensus        64 ~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigiiep~~~~A~~~~-------~~~rIgVlaT~~T~~s~~y~~~i~~  136 (276)
T 2dwu_A           64 FLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKVT-------KKGKIGVIGTVGTIQSNMYEKALHE  136 (276)
T ss_dssp             HHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHC-------SSSEEEEEECHHHHHTTHHHHHHHH
T ss_pred             HHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEeccHHHHHHHHHhc-------CCCeEEEEeChhhhhhHHHHHHHHH
Confidence            9999999999999999995 7899999999999999999998887631       2459999999999999999999987


Q ss_pred             cC
Q 026201          239 ED  240 (241)
Q Consensus       239 ~G  240 (241)
                      .|
T Consensus       137 ~~  138 (276)
T 2dwu_A          137 LD  138 (276)
T ss_dssp             HC
T ss_pred             hC
Confidence            53

>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*

Probab=99.80  E-value=4.2e-19  Score=156.66  Aligned_cols=130  Identities=16%  Similarity=0.197  Sum_probs=103.3

Q ss_pred             eEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHH
Q 026201           82 TVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF  160 (241)
Q Consensus        82 ~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~  160 (241)
                      .|||+. |+|.+   ..++.|.+..+..   +++-+-|..           ..|+       .+.+|+++.+.+.+.+++
T Consensus         2 ~igvfDSG~GGl---tv~~~l~~~lP~~---~~iy~~D~~-----------~~Py-------g~~s~~~i~~~~~~~~~~   57 (255)
T 2jfz_A            2 KIGVFDSGVGGF---SVLKSLLKARLFD---EIIYYGDSA-----------RVPY-------GTKDPTTIKQFGLEALDF   57 (255)
T ss_dssp             EEEEEESSSTTH---HHHHHHHHTTCCS---EEEEEECTT-----------TCCC-------TTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCccHH---HHHHHHHHHCCCC---CEEEEeCCC-----------CCCC-------CCCCHHHHHHHHHHHHHH
Confidence            699999 99999   5667777766654   233222221           1111       456899999999999999


Q ss_pred             HHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHhc
Q 026201          161 LEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE  239 (241)
Q Consensus       161 Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~~  239 (241)
                      |++.|||+|||||||+|. +++++++.+++||++|++++++.+.+...     ..++|||||||++|+++++|++.+++.
T Consensus        58 L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvigii~~av~~A~~~~~-----~~~~rigVlaT~~T~~~~~y~~~l~~~  132 (255)
T 2jfz_A           58 FKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVE-----DKNAPILVLGTKATIQSNAYDNALKQQ  132 (255)
T ss_dssp             HGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEECSSHHHHHHHHHHCC-----CTTSCEEEEECHHHHHHTHHHHHHHHT
T ss_pred             HHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHHHHHHHHHhhc-----CCCCEEEEEECHHHHhChHHHHHHHHc
Confidence            999999999999999996 78999999999999998998887765300     123499999999999999999999987


Q ss_pred             C
Q 026201          240 D  240 (241)
Q Consensus       240 G  240 (241)
                      |
T Consensus       133 g  133 (255)
T 2jfz_A          133 G  133 (255)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}

Probab=99.79  E-value=7.7e-19  Score=157.69  Aligned_cols=129  Identities=14%  Similarity=0.189  Sum_probs=101.3

Q ss_pred             CCeEEEE-eCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           80 ANTVGIV-GGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        80 ~k~IGII-GGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      .+.|||+ .|+|..   .++++|.+..+..   .++-+.|..           ..|+       ...+.+++.++..+.+
T Consensus        21 ~~~IgvfDSGvGGl---tv~~~i~~~lP~~---~~iy~~D~~-----------~~Py-------G~~s~~~i~~~~~~i~   76 (285)
T 2jfn_A           21 RPTVLVFDSGVGGL---SVYDEIRHLLPDL---HYIYAFDNV-----------AFPY-------GEKSEAFIVERVVAIV   76 (285)
T ss_dssp             EEEEEEEESSSTHH---HHHHHHHHHSTTS---EEEEEECTT-----------TCCT-------TTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCccHH---HHHHHHHHhCCCC---CeEEeeccC-----------CCCC-------ccCCHHHHHHHHHHHH
Confidence            4579999 599876   8899999998865   222222221           1111       2345677888888888


Q ss_pred             HHH-HHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHH
Q 026201          159 VFL-EKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL  236 (241)
Q Consensus       159 ~~L-e~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L  236 (241)
                      ++| ++.|||+|||||||+|. +++++++.+++||++|++++.++++..+        ++|||||||++|+++++|++.+
T Consensus        77 ~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi~~a~~~a~~~~~--------~~rIgVLaT~~T~~s~~y~~~l  148 (285)
T 2jfn_A           77 TAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKPAARLTA--------NGIVGLLATRGTVKRSYTHELI  148 (285)
T ss_dssp             HHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECCCCCHHHHHHHCS--------SSEEEEEECTTGGGCHHHHHHH
T ss_pred             HHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEehHHHHHHHHHhcC--------CCEEEEEEcHHHHhhHHHHHHH
Confidence            877 45899999999999995 8899999999999999887777765443        3499999999999999999999


Q ss_pred             HhcC
Q 026201          237 QHED  240 (241)
Q Consensus       237 ~~~G  240 (241)
                      ++.|
T Consensus       149 ~~~g  152 (285)
T 2jfn_A          149 ARFA  152 (285)
T ss_dssp             HHSC
T ss_pred             HHhC
Confidence            9887

>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A

Probab=99.57  E-value=2.9e-15  Score=133.78  Aligned_cols=134  Identities=13%  Similarity=0.121  Sum_probs=96.7

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      .++||+|+++++.++..++.++.... .  .+.+..++ ..++.    .+.++...            ..+.+.+.+.++
T Consensus        25 ~~rIGlI~p~s~~s~e~~~~~~~~~~-~--~~~~~~~~-ar~~~----~~v~~~~l------------~~~~~~l~~aa~   84 (273)
T 2xed_A           25 IRRIGLVVPSSNVTVETEMPALLSRH-P--GAEFSFHS-TRMRM----HTVSPEGL------------AAMNAQRERCVL   84 (273)
T ss_dssp             SEEEEEEEETTCCSHHHHHHHHHTTC-S--SCCEEEEE-EEECC----CBCSHHHH------------HHHHTTHHHHHH
T ss_pred             CCEEEEEECCCchhHHHHHHHHhccc-c--cCCeEEEE-eCCcc----CCCCHHHH------------HHHHHHHHHHHH
Confidence            45899999999999999876664321 1  00122212 11110    01222111            123334677889


Q ss_pred             HHHHhCCcEEEEeCCchhhhH---------HHHhccC-----CCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH
Q 026201          160 FLEKAGARCIVMPCHLSHIWH---------DEVCKGC-----SVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA  225 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~~---------d~l~~~~-----~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~  225 (241)
                      .|+++|+|+|+++|||+|.++         ++|++.+     ++|++++++++++.++..+.+        |||||+|-.
T Consensus        85 ~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~~~A~~~al~~~g~~--------rvgvltp~~  156 (273)
T 2xed_A           85 EIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQ--------RVALVTPYM  156 (273)
T ss_dssp             HHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEHHHHHHHHHHHTTCC--------EEEEEECSC
T ss_pred             HHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecHHHHHHHHHHHcCCC--------eEEEEcCCh
Confidence            999999999999999999885         9999998     999999999999999877655        999998766


Q ss_pred             HHhhhhHHHHHHhcCC
Q 026201          226 ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       226 T~~s~~Y~~~L~~~G~  241 (241)
                      +..+++|++.|++.|+
T Consensus       157 ~~~~~~~~~~l~~~Gi  172 (273)
T 2xed_A          157 RPLAEKVVAYLEAEGF  172 (273)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHHHCCC
Confidence            6678899999999885

>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A

Probab=99.54  E-value=2.9e-14  Score=125.72  Aligned_cols=132  Identities=7%  Similarity=-0.012  Sum_probs=97.1

Q ss_pred             eEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHH
Q 026201           82 TVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFL  161 (241)
Q Consensus        82 ~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~L  161 (241)
                      +|.||=-.+..+.-+-+++..+.... ...+++.++.|.-|.                ..+...||......+.+.++.|
T Consensus         3 rilvINPnts~~~T~~i~~~~~~~~~-p~~~i~~~t~~~gp~----------------~i~~~~d~~~a~~~l~~~~~~l   65 (245)
T 3qvl_A            3 RIQVINPNTSLAMTETIGAAARAVAA-PGTEILAVCPRAGVP----------------SIEGHFDEAIAAVGVLEQIRAG   65 (245)
T ss_dssp             EEEEECSSCCHHHHHHHHHHHHHHCC-TTEEEEEECCSSSCS----------------SCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHHhcC-CCCEEEEEeCCCCch----------------hhcChhHHHHHHHHHHHHHHHH
Confidence            57777544444433334443333322 356677777442111                1124557888888888888999


Q ss_pred             HHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHhcCC
Q 026201          162 EKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEDC  241 (241)
Q Consensus       162 e~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~~G~  241 (241)
                      ++.|+|+|||+|||+|.+ +++++.+++||++|++++++.+...+         +|||||+|.+|+. +.|++.+++.|.
T Consensus        66 ~~~g~d~iviaCnt~~~l-~~lr~~~~iPvigi~e~~~~~a~~~~---------~rigVlaT~~t~~-~~~~~~l~~~g~  134 (245)
T 3qvl_A           66 REQGVDGHVIASFGDPGL-LAARELAQGPVIGIAEAAMHMATMVA---------TRFSIVTTLPRTL-IIARHLLHQYGF  134 (245)
T ss_dssp             HHHTCSEEEEC-CCCTTH-HHHHHHCSSCEEEHHHHHHHHHHHHC---------SCEEEEESCGGGH-HHHHHHHHHHTC
T ss_pred             HHCCCCEEEEeCCChhHH-HHHHHHcCCCEECccHHHHHHHHHcC---------CEEEEEEcchhHH-HHHHHHHHHcCC
Confidence            999999999999999987 99999999999999999998887753         3899999999986 899999998773

>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}

Probab=99.53  E-value=1.5e-14  Score=124.30  Aligned_cols=122  Identities=15%  Similarity=0.091  Sum_probs=92.0

Q ss_pred             eEEEEeCCChHHHHH-HHHHHHHHhccCCCCCEEEecCccc-hHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           82 TVGIVGGASVDSTLN-LLGKLVQLSGEENDFPFLLCSDPLL-NKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        82 ~IGIIGGmGp~AT~~-fy~kI~~~t~~d~~~~~vi~S~p~i-~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      +||+|+++++.++.. |++.+    +.+    +-+++ ..+ +    .++.            ...++..+.+.+.+.++
T Consensus         7 ~IG~i~p~s~~~~e~~~~~~~----~~~----v~~~~-~r~~~----~~~~------------~~~~~~~~~~~l~~~a~   61 (223)
T 2dgd_A            7 RIGVILPANNAGMEYDLWKMA----PEG----VSIHS-TRMKP----TKGC------------EPENVEEFEKELKYSYS   61 (223)
T ss_dssp             EEEEEEETTCCSHHHHHHHHC----CTT----EEEEE-EEECC----CSSS------------SCSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHc----cCC----eEEEE-Eeeec----CCCC------------CHHHHHHHHHHHHHHHH
Confidence            899999999999998 55543    222    11111 111 0    0011            22346667777888999


Q ss_pred             HHHHhCCcEEEEeCCchhhhH----HHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHH
Q 026201          160 FLEKAGARCIVMPCHLSHIWH----DEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEK  235 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~~----d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~  235 (241)
                      .|+++ ||+|+++|||+|.++    +++++.+++|    +++++++++..+.+        |||||+|..+..+++|++.
T Consensus        62 ~L~~~-~d~ivi~Cnt~~~~~g~~~~~l~~~~~iP----~~a~~~a~~~~g~~--------rvgvlt~~~~~~~~~~~~~  128 (223)
T 2dgd_A           62 LLAEV-SDIIIYGRTYGTHKHAHVIKRVIKDVVIP----EESVYELLKKLNVR--------KLWIGTPYIKERTLEEVEW  128 (223)
T ss_dssp             HHTTT-CSEEEECCCTTTTTCHHHHHHHSTTCBCH----HHHHHHHHHHTTCC--------EEEEEESSCHHHHHHHHHH
T ss_pred             Hhhcc-CCEEEEcCCHHHHhhhHHHHHHHHhcCCC----HHHHHHHHHHcCCC--------eEEEEeCCchHHHHHHHHH
Confidence            99999 999999999999886    9999999999    78898888776544        9999987666668899999


Q ss_pred             HHhcCC
Q 026201          236 LQHEDC  241 (241)
Q Consensus       236 L~~~G~  241 (241)
                      |++.|+
T Consensus       129 l~~~G~  134 (223)
T 2dgd_A          129 WRNKGF  134 (223)
T ss_dssp             HHTTTC
T ss_pred             HHhCCc
Confidence            999885

>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}

Probab=99.42  E-value=1.2e-13  Score=118.49  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHH
Q 026201          147 DSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI  226 (241)
Q Consensus       147 ~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T  226 (241)
                      +......+.+.+++|++.|+|+|+++|||+ .+++++++.+++|+++|++++++.+...+         +|||||+|.+|
T Consensus        57 ~~~~~~~l~~~~~~l~~~g~d~iviaCnta-~~~~~l~~~~~iPvi~i~~~~~~~a~~~~---------~rigVlat~~t  126 (228)
T 2eq5_A           57 EREAEPKIIRLAKEFEREGVDAIIISCAAD-PAVEKVRKLLSIPVIGAGSSVSALALAYG---------RRVGVLNLTEE  126 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEEECSTTC-TTHHHHHHHCSSCEEEHHHHHHHHHHTTC---------SSEEEECSSSC
T ss_pred             HHHhHHHHHHHHHHHHHCCCCEEEEeCCch-HHHHHHHHhCCCCEeCccHHHHHHHHHhC---------CeEEEEecCcc
Confidence            444555677788899999999999999999 88999999999999999999998876532         39999999999


Q ss_pred             HhhhhHHHHH-HhcC
Q 026201          227 LTAGFYQEKL-QHED  240 (241)
Q Consensus       227 ~~s~~Y~~~L-~~~G  240 (241)
                      +.+ .|++.+ ++.|
T Consensus       127 ~~~-~~~~~~~~~~g  140 (228)
T 2eq5_A          127 TPK-VIRSILGNNLI  140 (228)
T ss_dssp             CCH-HHHHHHGGGEE
T ss_pred             cHH-HHHHHHHHHhC
Confidence            995 799999 8776

>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*

Probab=99.37  E-value=9.5e-13  Score=115.48  Aligned_cols=88  Identities=14%  Similarity=0.133  Sum_probs=76.2

Q ss_pred             CHHHHHHH---HHHHHHHHHHhCCcEEEEeCCchhhh---------HHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCC
Q 026201          146 DDSLIVEN---LRRKRVFLEKAGARCIVMPCHLSHIW---------HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAG  213 (241)
Q Consensus       146 d~~~i~~~---l~~~~~~Le~~Gad~IvIaCNTAH~~---------~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~  213 (241)
                      ..+.+.++   +.+.++.|+++|+|+|+++|||+|.|         .++|++.+++|++++.+++++++++.|.+     
T Consensus        44 t~e~l~~~~~~l~~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~~~A~~~al~~~g~~-----  118 (240)
T 3ixl_A           44 TPEGYDAVIESVVDHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVR-----  118 (240)
T ss_dssp             SHHHHHHHGGGHHHHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEHHHHHHHHHHHTTCS-----
T ss_pred             CHHHHHHHHHHHHHHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECHHHHHHHHHHHhCCC-----
Confidence            34444444   67889999999999999999999974         49999999999999999999999998776     


Q ss_pred             CCCEEEEEecHHHHhhhhHHHHHHhcCC
Q 026201          214 SPLRIGVLAKNAILTAGFYQEKLQHEDC  241 (241)
Q Consensus       214 ~~~rVGLLaT~~T~~s~~Y~~~L~~~G~  241 (241)
                         ||||++|-.+..+++|++.|++.||
T Consensus       119 ---rvglltpy~~~~~~~~~~~l~~~Gi  143 (240)
T 3ixl_A          119 ---RVALATAYIDDVNERLAAFLAEESL  143 (240)
T ss_dssp             ---EEEEEESSCHHHHHHHHHHHHHTTC
T ss_pred             ---EEEEEeCChHHHHHHHHHHHHHCCC
Confidence               9999999666668999999999986

>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}

Probab=96.77  E-value=0.0092  Score=52.75  Aligned_cols=127  Identities=13%  Similarity=0.124  Sum_probs=75.8

Q ss_pred             cCCeEEEEeCCChHHHH--HHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTL--NLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~--~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      +.++|||||=   .+|+  .+|++..+....+  ..+.....|.+-+.+..               ...+.+...+.+.+
T Consensus       110 ~~~~IGVLaT---~~Ti~s~~y~~~l~~~~~~--~~V~~~~~~~lV~~vE~---------------g~~~~~~~~~~l~~  169 (268)
T 3out_A          110 NLNTVGVIAT---PATINSNAYALQIHKKNPN--IEVYSNPCGLFVSMIEE---------------GFVSGHIVELVAKE  169 (268)
T ss_dssp             TCSEEEEEEC---HHHHHHTHHHHHHHHHCTT--SEEEEEECTTHHHHHHT---------------TCCSSHHHHHHHHH
T ss_pred             cCCeEEEEec---CcccccHHHHHHHHHhCCC--CEEecCCChHHHHHHHc---------------CCcCCHHHHHHHHH
Confidence            4679999953   3455  3777776655432  12222223332222211               11122344566777


Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHh-cCCCCCC--CCCCEEEEEecHH
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA-NMKPLEA--GSPLRIGVLAKNA  225 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~-~~k~~~~--~~~~rVGLLaT~~  225 (241)
                      .++.|.+.|+|.||+.|--.-...+.+++..++|+|+=.+++++.+++. ..+++..  ....++-++.|..
T Consensus       170 ~l~~l~~~g~D~iILGCTh~pll~~~i~~~~~v~viD~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~t~~  241 (268)
T 3out_A          170 YLSYFHDKNIQALILGCTHYPIIKESIAKILDVKLIDPSLQASKMLYSLLFENKLLNTTKSNPEYRFYVTDI  241 (268)
T ss_dssp             HHGGGTTSCCSEEEECSTTGGGGHHHHHHHCCSEEECCHHHHHHHHHHHHHHTTCCCCCC-CCCEEEEESCC
T ss_pred             HHHHHHhCCCCEEEECCCChHHHHHHHhcCCCCceechHHHHHHHHHHHHHhccccccCCCCCcEEEEECCC
Confidence            7778888899999999975445568898888999999999988887763 1111111  1233566677654

>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A

Probab=96.69  E-value=0.0095  Score=51.91  Aligned_cols=105  Identities=17%  Similarity=0.192  Sum_probs=65.3

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      .++||||+-.+..  ..+|++..+....+....-+...  ..+         ..+        ...+.+...+.+.+.+.
T Consensus       109 ~~rigVlaT~~t~--~~~~~~~l~~~g~~~~~~~v~~~--~~~---------~~~--------l~~~~~~~~~~l~~~~~  167 (245)
T 3qvl_A          109 ATRFSIVTTLPRT--LIIARHLLHQYGFHQHCAALHAI--DLP---------VLA--------LEDGSGLAQEKVRERCI  167 (245)
T ss_dssp             CSCEEEEESCGGG--HHHHHHHHHHHTCGGGEEEEEEC--CSC---------GGG--------GGSSSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcchhH--HHHHHHHHHHcCCCCeEEEEeCC--CCC---------HHH--------HcCCcHHHHHHHHHHHH
Confidence            5799999766654  37888887766543111111111  000         000        00112233444555443


Q ss_pred             -HHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          160 -FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       160 -~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                       .+++.|+|.||+.|--.-.+.+.|++.+++|+|+-.+++++.+...
T Consensus       168 ~~~~~~gad~IVLGCTh~p~l~~~i~~~~gVpvID~~~a~~~~~~~l  214 (245)
T 3qvl_A          168 RALKEDGSGAIVLGSGGMATLAQQLTRELRVPVIDGVSAAVKMVESL  214 (245)
T ss_dssp             HHHHHSCCSEEEECCGGGGGGHHHHHHHHTSCEECHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEECCCChHHHHHHHHHHcCCeEEccHHHHHHHHHHH
Confidence             4556899999999986655679999989999999999998887653

>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}

Probab=96.65  E-value=0.014  Score=51.17  Aligned_cols=109  Identities=13%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      +.++|||||--+...+ .+|++..+.....  ..++....|..-..+..               ...+.+...+.+.+.+
T Consensus       108 ~~~rIgVlaT~~T~~~-~~y~~~l~~~~~g--~~v~~~~~~~~v~~ie~---------------g~~~~~~~~~~l~~~~  169 (267)
T 2gzm_A          108 NTYHVGIIGTIGTVKS-GAYEEALKSINNR--VMVESLACPPFVELVES---------------GNFESEMAYEVVRETL  169 (267)
T ss_dssp             SSCEEEEEECHHHHHH-THHHHHHHHHCTT--CEEEEEECTTHHHHHHT---------------TCSSSHHHHHHHHHHH
T ss_pred             CCCEEEEEEChHHhcc-HHHHHHHHHhCCC--CEEeccCCHHHHHHHhC---------------CCCCCHHHHHHHHHHH
Confidence            4679999954333322 3677776665322  22332222322221111               1112244556677777


Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHHh
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA  205 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~~  205 (241)
                      +.|.+.|+|.||+.|--.....+++++.+  ++|+|+-.+++++++.+.
T Consensus       170 ~~l~~~~~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs~~~~a~~~~~~  218 (267)
T 2gzm_A          170 QPLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDETAREVSTI  218 (267)
T ss_dssp             HHHHHSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEcccChHHHHHHHHHHcCCCCEEECcHHHHHHHHHHH
Confidence            78888899999999975555678898766  899999999988777653

>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}

Probab=96.55  E-value=0.016  Score=50.94  Aligned_cols=108  Identities=13%  Similarity=0.177  Sum_probs=67.8

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      +.++|||||--+...+ .+|++..+....+  ..++....|..-+.+.               ....+.+...+.+.+.+
T Consensus       109 ~~~rIgVlaT~~T~~s-~~y~~~i~~~~~~--~~v~~~~~~~~v~~ve---------------~g~~~~~~~~~~l~~~l  170 (272)
T 1zuw_A          109 DNQHIGVIGTENTIKS-NAYEEALLALNPD--LKVENLACPLLVPFVE---------------SGKFLDQTADEIVKTSL  170 (272)
T ss_dssp             SSSEEEEEECHHHHHT-THHHHHHHHHCTT--CEEEEEECTTHHHHHT---------------SCCCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEChhhhhh-hHHHHHHHHhCCC--CEEEeccCHHHHHHHH---------------CCCCCCHHHHHHHHHHH
Confidence            4679999965333322 3566665554222  2233222333222221               11223345566677777


Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHH
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKE  204 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~  204 (241)
                      +.|.+.|+|.||+.|--.....+.+++.+  ++|+|+-.+++++.+.+
T Consensus       171 ~~l~~~~~D~iVLGCTh~pll~~~i~~~~~~~v~vIDs~~~~a~~~~~  218 (272)
T 1zuw_A          171 YPLKDTSIDSLILGCTHYPILKEAIQRYMGEHVNIISSGDETAREVST  218 (272)
T ss_dssp             HHHHHSCCSEEEEESTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEECccCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence            88888899999999986666678898766  89999999988887654

>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}

Probab=96.43  E-value=0.018  Score=50.66  Aligned_cols=108  Identities=15%  Similarity=0.225  Sum_probs=68.2

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      +.++|||||--+...+ .+|++..+....+  ..++-...|..-+.+..+               ..+.+...+.+.+.+
T Consensus       112 ~~~rIgVlaT~~T~~s-~~y~~~i~~~~~~--~~v~~~~~~~~v~~ve~g---------------~~~~~~~~~~l~~~l  173 (276)
T 2dwu_A          112 KKGKIGVIGTVGTIQS-NMYEKALHELDTY--LKVHSHACPTLATVVENR---------------LEDTAYVTQQVKQAL  173 (276)
T ss_dssp             SSSEEEEEECHHHHHT-THHHHHHHHHCTT--CEEEEEECTTHHHHHHHS---------------TTCHHHHHHHHHHHH
T ss_pred             CCCeEEEEeChhhhhh-HHHHHHHHHhCCC--CEEEeeeCHHHHHHHHcC---------------CcCCHHHHHHHHHHH
Confidence            4578999954333333 2667666554322  223222333332222211               112244556677777


Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHH
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKE  204 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~  204 (241)
                      +.|.+.|+|.||+.|--.....+.+++.+  ++|+|+-.+++++.+.+
T Consensus       174 ~~l~~~~~D~IVLGCTh~p~l~~~i~~~~~~~v~vIDs~~~~a~~~~~  221 (276)
T 2dwu_A          174 LPLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELST  221 (276)
T ss_dssp             HHHHTSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEECCCCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence            88888999999999986666678898866  89999999998888665

>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}

Probab=96.41  E-value=0.014  Score=51.77  Aligned_cols=108  Identities=7%  Similarity=0.052  Sum_probs=66.6

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHH-HHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLI-VENLRRK  157 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i-~~~l~~~  157 (241)
                      +.++|||||--+... ..+|++..+....+  ..++....|..-+.+..               ...+.+.. .+.+.+.
T Consensus       127 ~~~rIgVLaT~~T~~-~~~y~~~l~~~~~~--~~v~~~~~~~~v~~ie~---------------g~~~~~~~~~~~l~~~  188 (286)
T 2jfq_A          127 RNQNVLVLGTEGTIK-SEAYRTHIKRINPH--VEVHGVACPGFVPLVEQ---------------MRYSDPTITSIVIHQT  188 (286)
T ss_dssp             SSSEEEEEECHHHHH-HTHHHHHHHHHCTT--CEEEEEECTTHHHHHHT---------------TCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEeChHHhc-chHHHHHHHHhCCC--CEEEecCCHHHHHHHHc---------------CCCCCchhHHHHHHHH
Confidence            457899996333332 23566666554222  22332223332222211               11111334 5667777


Q ss_pred             HHHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHH
Q 026201          158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKE  204 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~  204 (241)
                      ++.|.+.|+|.||+.|--.-...+++++.+  ++|+|+-.+++++.+.+
T Consensus       189 ~~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a~a~~~~~  237 (286)
T 2jfq_A          189 LKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSA  237 (286)
T ss_dssp             HGGGTTCSCSEEEEESSSGGGGHHHHHHHTTTCSEEEEHHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEcCcCHHHHHHHHHHHcCCCCEEECcHHHHHHHHHH
Confidence            777878899999999976556678898877  89999999988887665

>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*

Probab=96.11  E-value=0.013  Score=52.12  Aligned_cols=108  Identities=11%  Similarity=0.132  Sum_probs=67.0

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      +.++|||||--+...+ .+|++..+....+  ..++-...|.+-+.+..+               ..+.+...+.+.+.+
T Consensus       129 ~~~rIgVLaT~~T~~s-~~y~~~l~~~~~~--~~v~~~~~~~lv~~ve~g---------------~~~~~~~~~~l~~~l  190 (290)
T 2vvt_A          129 KNNKIGVIGTLGTIKS-ASYEIAIKSKAPA--IEVTSLACPKFVPIVESN---------------QYRSSVAKKIVAETL  190 (290)
T ss_dssp             SSSEEEEEECHHHHHT-THHHHHHHTTCTT--SEEEEEECTTHHHHHHTT---------------CTTSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCcHhhhh-HHHHHHHHHhCCC--CEEEeccCHHHHHHHHcC---------------CCCCHHHHHHHHHHH
Confidence            3578999964433332 2677666554222  233322333332222211               112244556677777


Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHH
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKE  204 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~  204 (241)
                      +.|.+.|+|.||+.|--.-.+.+.+++.+  ++|+|+-.+++++.+.+
T Consensus       191 ~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a~a~~~~~  238 (290)
T 2vvt_A          191 QALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSM  238 (290)
T ss_dssp             GGGTTSCCSEEEECSTTGGGGHHHHHHHHCTTCEEEEHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEECCcCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence            77888899999999975555678898866  89999999988887665

>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}

Probab=95.99  E-value=0.13  Score=43.95  Aligned_cols=75  Identities=13%  Similarity=0.088  Sum_probs=46.6

Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc-----------------------------HHHHHHHHHh--
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS-----------------------------ECVAKELKEA--  205 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii-----------------------------d~t~~~i~~~--  205 (241)
                      .++.|.+.++|.|++....+.....  ....++|+|-+.                             ..+++.+.+.  
T Consensus        54 ~~~~l~~~~vDgII~~~~~~~~~~~--~~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~~~~~~~~~~l~~~~p  131 (295)
T 3lft_A           54 MSKQLVANGNDLVVGIATPAAQGLA--SATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIKALTP  131 (295)
T ss_dssp             HHHHHTTSSCSEEEEESHHHHHHHH--HHCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEEECCCHHHHHHHHHHHCT
T ss_pred             HHHHHHhcCCCEEEECCcHHHHHHH--HcCCCCCEEEEeccChhhcCccccccCCCCcEEEEECCccHHHHHHHHHHhCC
Confidence            3456788899998887643322222  223567876531                             1345777776  


Q ss_pred             cCCCCCCCCCCEEEEEecHH----HHhhhhHHHHHHhcCC
Q 026201          206 NMKPLEAGSPLRIGVLAKNA----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       206 ~~k~~~~~~~~rVGLLaT~~----T~~s~~Y~~~L~~~G~  241 (241)
                      |.|        |||+++.+.    ..+..-|++.+++.|+
T Consensus       132 g~~--------~I~~i~~~~~~~~~~r~~g~~~al~~~gi  163 (295)
T 3lft_A          132 NVK--------TIGALYSSSEDNSKTQVEEFKAYAEKAGL  163 (295)
T ss_dssp             TCC--------EEEEEEETTCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCc--------EEEEEeCCCCcchHHHHHHHHHHHHHcCC
Confidence            555        999997543    2233558888888775

>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*

Probab=95.62  E-value=0.041  Score=48.65  Aligned_cols=108  Identities=10%  Similarity=0.108  Sum_probs=66.2

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      +.++|||||=-+...+ .+|++..+....+  ..+.....|..-+.+..               ...+.+...+.+.+.+
T Consensus       110 ~~~~IGVLaT~~Ti~s-~~y~~~i~~~~~~--~~v~~~~~~~lV~~vE~---------------g~~~~~~~~~~l~~~l  171 (269)
T 3ist_A          110 RNNKIGVLGTLGTVES-MAYPTALKGLNRR--VEVDSLACPKFVSVVES---------------GEYKSAIAKKVVAESL  171 (269)
T ss_dssp             SSSEEEEEECHHHHHH-THHHHHHHHHCTT--CEEEEEECHHHHHHHHT---------------TCTTSHHHHHHHHHHH
T ss_pred             CCCeEEEEeccchhhH-HHHHHHHHHhCCC--CEEeccCCHHHHHHHHc---------------CCCCCHHHHHHHHHHH
Confidence            4679999954433322 4676666554322  22222222322222211               1112234556677777


Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHH
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKE  204 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~  204 (241)
                      +.|.+.|+|.||+.|-=.-...+.+++..  ++|+|+=.+++++.+++
T Consensus       172 ~~l~~~g~D~iVLGCTh~pll~~~i~~~~~~~v~vIDs~~~~a~~~~~  219 (269)
T 3ist_A          172 LPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSA  219 (269)
T ss_dssp             GGGGGSCCCEEEECSTTGGGGHHHHHHHHCTTSEEECTHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEECCCCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence            78888999999999974444568888754  69999999999888775

>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*

Probab=95.24  E-value=0.057  Score=47.35  Aligned_cols=107  Identities=12%  Similarity=0.141  Sum_probs=64.3

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      +.++|||||--+...+ .+|++..+.....  ..++....|..-+.+.               ....+.+...+.+.+.+
T Consensus       117 ~~~rIgVlaT~~T~~~-~~y~~~l~~~~~g--~~v~~~~~~~~v~~ie---------------~g~~~~~~~~~~l~~~~  178 (273)
T 2oho_A          117 TKGQVGVIGTPMTVAS-DIYRKKIQLLAPS--IQVRSLACPKFVPIVE---------------SNEMCSSIAKKIVYDSL  178 (273)
T ss_dssp             SSSEEEEEECHHHHHH-THHHHHHHHHCTT--SEEEEEECTTHHHHHC---------------C-----HHHHHHHHHHH
T ss_pred             CCCeEEEEECchhhcc-hHHHHHHHHhCCC--CEEEecCCHHHHHHHH---------------CCCCCCHHHHHHHHHHH
Confidence            3578999964443333 4666666654322  3333223333211111               11112244556677777


Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHH
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKE  204 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~  204 (241)
                      +.|.+. +|.||+.|--...+.+++++.+  ++|+|+-.+++++++.+
T Consensus       179 ~~l~~~-~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs~~~~a~~~~~  225 (273)
T 2oho_A          179 APLVGK-IDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISV  225 (273)
T ss_dssp             TTTTTS-CSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHH
T ss_pred             HHHHhc-CCEEEEcCCCHHHHHHHHHHHhCCCCEEECcHHHHHHHHHH
Confidence            777666 9999999976656678898765  79999999998877665

>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*

Probab=95.17  E-value=0.23  Score=42.86  Aligned_cols=126  Identities=10%  Similarity=0.108  Sum_probs=71.7

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      ..++||||| ...-....+|++..+... .  ..++-...+.+-+.+..+               ..+.+...+.+.+.+
T Consensus       107 ~~~rigVla-T~~T~~~~~y~~~l~~~g-~--~~v~~~~~~~lv~~ie~g---------------~~~~~~~~~~l~~~~  167 (255)
T 2jfz_A          107 KNAPILVLG-TKATIQSNAYDNALKQQG-Y--LNISHLATSLFVPLIEES---------------ILEGELLETCMHYYF  167 (255)
T ss_dssp             TTSCEEEEE-CHHHHHHTHHHHHHHHTT-C--CCEEEEECTTHHHHHHTT---------------CCSSHHHHHHHHHHH
T ss_pred             CCCEEEEEE-CHHHHhChHHHHHHHHcC-C--CEEEecChHHHHHHHHhc---------------ccCCHHHHHHHHHHH
Confidence            467999994 333333347777766654 2  122222233332222211               111123344455444


Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccC--------CCCeeeccHHHHHHHHHhc-CCCCCCCCCCEEEEEecHH
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--------SVPFLHVSECVAKELKEAN-MKPLEAGSPLRIGVLAKNA  225 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--------~vPil~Iid~t~~~i~~~~-~k~~~~~~~~rVGLLaT~~  225 (241)
                      +. .+.|+|.||+.|--...+.+++++.+        ++|+|+-.+++++.+.+.- .+.+.. ...++-++.|..
T Consensus       168 ~~-~~~~~d~iILGCTh~p~l~~~i~~~~~~~~~~~~~v~viDs~~~~a~~~~~~l~~~~~~~-~~~~~~~~~t~~  241 (255)
T 2jfz_A          168 TP-LEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQKYALKNNAC-TFPKVEFHASGD  241 (255)
T ss_dssp             TT-CCSCCSEEEEESTTGGGGHHHHHHHHHHHSCCSSCCEEEEHHHHHHHHHHHHTTCCSCSC-SSCEEEEEESSC
T ss_pred             hh-hcCCCCEEEEcCcChHHHHHHHHHHhCccccCCCCCEEECcHHHHHHHHHHHHHhccccC-CCCCEEEEECCC
Confidence            44 45799999999987766778888654        4999999999999888752 111111 113566666643

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*

Probab=95.08  E-value=0.43  Score=39.46  Aligned_cols=121  Identities=13%  Similarity=0.156  Sum_probs=67.9

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      .++||++=--   .+-.||..+.+...+.   ....+++++..                         .+.+...    +
T Consensus         2 s~~Igvi~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~~~----~   49 (272)
T 3o74_A            2 TRTLGFILPD---LENPSYARIAKQLEQGARARGYQLLIASSD-------------------------DQPDSER----Q   49 (272)
T ss_dssp             CCEEEEEESC---TTCHHHHHHHHHHHHHHHHTTCEEEEEECT-------------------------TCHHHHH----H
T ss_pred             ceEEEEEeCC---CcChhHHHHHHHHHHHHHHCCCEEEEEeCC-------------------------CCHHHHH----H
Confidence            5789998632   2335777777766642   45566665411                         1222222    2


Q ss_pred             HHHHHHHhCCcEEEEeCCc--hhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCC
Q 026201          157 KRVFLEKAGARCIVMPCHL--SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP  215 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNT--AH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~  215 (241)
                      .++.|.+.++|.|++....  ....++.+++ .++|++-+                   ...+++++.+.|.+       
T Consensus        50 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~-------  121 (272)
T 3o74_A           50 LQQLFRARRCDALFVASCLPPEDDSYRELQD-KGLPVIAIDRRLDPAHFCSVISDDRDASRQLAASLLSSAPR-------  121 (272)
T ss_dssp             HHHHHHHTTCSEEEECCCCCSSCCHHHHHHH-TTCCEEEESSCCCTTTCEEEEECHHHHHHHHHHHHHTTCCS-------
T ss_pred             HHHHHHHcCCCEEEEecCccccHHHHHHHHH-cCCCEEEEccCCCccccCEEEEchHHHHHHHHHHHHHCCCc-------
Confidence            3456778899988775543  2334565554 35665543                   23455666666544       


Q ss_pred             CEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          216 LRIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       216 ~rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                       ||++++.+.     ..+..-|.+.++++|+
T Consensus       122 -~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~  151 (272)
T 3o74_A          122 -SIALIGARPELSVSQARAGGFDEALQGYTG  151 (272)
T ss_dssp             -EEEEEEECTTSHHHHHHHHHHHHHTTTCCS
T ss_pred             -EEEEEecCCCCccHHHHHHHHHHHHHHcCC
Confidence             999997432     1223346777776653

>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}

Probab=94.94  E-value=0.33  Score=40.97  Aligned_cols=121  Identities=15%  Similarity=0.176  Sum_probs=68.1

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++---   .+-.||..+.+...+.   ....+++++..                         .+.+...    
T Consensus         7 ~~~~Igvi~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-------------------------~~~~~~~----   54 (285)
T 3c3k_A            7 KTGMLLVMVSN---IANPFCAAVVKGIEKTAEKNGYRILLCNTE-------------------------SDLARSR----   54 (285)
T ss_dssp             CCCEEEEEESC---TTSHHHHHHHHHHHHHHHHTTCEEEEEECT-------------------------TCHHHHH----
T ss_pred             CCCEEEEEeCC---CCCchHHHHHHHHHHHHHHcCCEEEEEeCC-------------------------CCHHHHH----
Confidence            35689998632   1235777776666542   34455554310                         1112212    


Q ss_pred             HHHHHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP  215 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~  215 (241)
                      +.++.|...++|.|++.... ....++.++  .++|++-+                   ...+++++.+.|.+       
T Consensus        55 ~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~--~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~-------  125 (285)
T 3c3k_A           55 SCLTLLSGKMVDGVITMDALSELPELQNII--GAFPWVQCAEYDPLSTVSSVSIDDVAASEYVVDQLVKSGKK-------  125 (285)
T ss_dssp             HHTHHHHTTCCSEEEECCCGGGHHHHHHHH--TTSSEEEESSCCTTSSSCEEECCHHHHHHHHHHHHHHTTCC-------
T ss_pred             HHHHHHHhCCCCEEEEeCCCCChHHHHHHh--cCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHcCCC-------
Confidence            23356778899988876443 234556665  56776643                   22355666666554       


Q ss_pred             CEEEEEecHH---H--HhhhhHHHHHHhcCC
Q 026201          216 LRIGVLAKNA---I--LTAGFYQEKLQHEDC  241 (241)
Q Consensus       216 ~rVGLLaT~~---T--~~s~~Y~~~L~~~G~  241 (241)
                       ||++++.+.   +  -+..-|.+.++++|+
T Consensus       126 -~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~  155 (285)
T 3c3k_A          126 -RIALINHDLAYQYAQHRESGYLNRLKFHGL  155 (285)
T ss_dssp             -CEEEEECCTTSHHHHHHHHHHHHHHHHHTC
T ss_pred             -eEEEEeCCCccccHHHHHHHHHHHHHHcCC
Confidence             999997542   1  123347788877763

>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A

Probab=94.84  E-value=0.077  Score=44.87  Aligned_cols=55  Identities=24%  Similarity=0.333  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       149 ~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      ...+.+.+.++.|.+.|+|.|++.|--...+.++++  .++|+++-.+.+++++.+.
T Consensus       170 ~~~~~l~~~~~~l~~~g~d~iiLGCT~~p~l~~~~~--~~vpviDs~~~~a~~~~~~  224 (228)
T 1jfl_A          170 LGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD--LKVPLIDPMDVIAEVAVKV  224 (228)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEECSHHHHHHCCGGG--CSSCEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCcCEEEECCCChHhhhhhhc--CCCCEEChHHHHHHHHHHH
Confidence            346667777788888899999999975555556665  6799999999888887764

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A

Probab=94.79  E-value=0.45  Score=39.80  Aligned_cols=76  Identities=9%  Similarity=0.093  Sum_probs=44.8

Q ss_pred             HHHHHHhCCcEEEEeCCch-hhhHHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTA-H~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      ++.|.+.++|.|++..... ....+.+++..++|+|-+                    ...+++++.+.|.+        
T Consensus        56 ~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~~~~~~~~L~~~G~~--------  127 (289)
T 1dbq_A           56 LSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHR--------  127 (289)
T ss_dssp             HHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCCSSSCEEEEECHHHHHHHHHHHHHHTTCC--------
T ss_pred             HHHHHhCCCCEEEEEeccCCHHHHHHHHhccCCCEEEEccCCCccCcCCEEEeCcHHHHHHHHHHHHHCCCC--------
Confidence            4567788999888755433 344566654346665533                    12345666666544        


Q ss_pred             EEEEEecHHH-----HhhhhHHHHHHhcCC
Q 026201          217 RIGVLAKNAI-----LTAGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~~T-----~~s~~Y~~~L~~~G~  241 (241)
                      ||++++.+..     .+..-|.+.++++|+
T Consensus       128 ~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~  157 (289)
T 1dbq_A          128 EIGVIPGPLERNTGAGRLAGFMKAMEEAMI  157 (289)
T ss_dssp             SEEEECCC------CHHHHHHHHHHHHTTC
T ss_pred             eEEEEecCCccccHHHHHHHHHHHHHHCCC
Confidence            9999975421     123347788877763

>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}

Probab=94.77  E-value=0.11  Score=43.77  Aligned_cols=52  Identities=10%  Similarity=0.095  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHh--CCcEEEEeCCchhhh--HHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          154 LRRKRVFLEKA--GARCIVMPCHLSHIW--HDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       154 l~~~~~~Le~~--Gad~IvIaCNTAH~~--~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      +.+.++.|.+.  |||.|++.|--...+  .+++++.+++|+|+-...++.++.+.
T Consensus       158 ~~~~~~~l~~~~~gadaIvLgCT~l~~~~~~~~l~~~~g~PVids~~~~a~~~l~~  213 (223)
T 2dgd_A          158 IYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDMPVVSENAAAMWEALNK  213 (223)
T ss_dssp             HHHHHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTSCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCEEEEeCCcccHHHHHHHHHHHhCCCEEEhHHHHHHHHHHH
Confidence            34445566677  999999999888764  68898888999999999988776653

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=94.67  E-value=0.56  Score=39.65  Aligned_cols=124  Identities=10%  Similarity=0.015  Sum_probs=65.0

Q ss_pred             hccCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHH
Q 026201           77 LNQANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVEN  153 (241)
Q Consensus        77 ~~~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~  153 (241)
                      |++.++||++--..   +-.||..+.+...+.   ....++++.+.                        ..+.+...  
T Consensus         1 ~s~~~~I~~i~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~------------------------~~~~~~~~--   51 (305)
T 3g1w_A            1 MSLNETYMMITFQS---GMDYWKRCLKGFEDAAQALNVTVEYRGAA------------------------QYDIQEQI--   51 (305)
T ss_dssp             ----CEEEEEESST---TSTHHHHHHHHHHHHHHHHTCEEEEEECS------------------------SSCHHHHH--
T ss_pred             CCCCceEEEEEccC---CChHHHHHHHHHHHHHHHcCCEEEEeCCC------------------------cCCHHHHH--
Confidence            45678999987332   225666666665532   34455552211                        11222222  


Q ss_pred             HHHHHHHHHHhCCcEEEEeCCchhh---hHHHHhccCCCCeeec--------------------cHHHHHHHHHh--cCC
Q 026201          154 LRRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHV--------------------SECVAKELKEA--NMK  208 (241)
Q Consensus       154 l~~~~~~Le~~Gad~IvIaCNTAH~---~~d~l~~~~~vPil~I--------------------id~t~~~i~~~--~~k  208 (241)
                        +.++.|...++|.|++.......   .++++++ .++|++-+                    ...+++++.+.  |.+
T Consensus        52 --~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~  128 (305)
T 3g1w_A           52 --TVLEQAIAKNPAGIAISAIDPVELTDTINKAVD-AGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEG  128 (305)
T ss_dssp             --HHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHTTTCE
T ss_pred             --HHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHH-CCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHhCCCc
Confidence              23356777899988876544332   3344433 35555533                    23456677776  554


Q ss_pred             CCCCCCCCEEEEEecHHH----HhhhhHHHHHHhcC
Q 026201          209 PLEAGSPLRIGVLAKNAI----LTAGFYQEKLQHED  240 (241)
Q Consensus       209 ~~~~~~~~rVGLLaT~~T----~~s~~Y~~~L~~~G  240 (241)
                              ||++++.+..    .+..-|++.++++|
T Consensus       129 --------~i~~i~~~~~~~~~~R~~gf~~~l~~~~  156 (305)
T 3g1w_A          129 --------EVAVITLPNQLNHQERTTGFKETLEAEF  156 (305)
T ss_dssp             --------EEEEEECTTCHHHHHHHHHHHHHHHHHC
T ss_pred             --------EEEEEeCCCcccHHHHHHHHHHHHHhhC
Confidence                    9999985532    12233677776654

>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}

Probab=94.64  E-value=0.84  Score=37.95  Aligned_cols=121  Identities=7%  Similarity=0.084  Sum_probs=65.7

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++=.-   .+-.||..+.+...+.   ....++++...                         .+.+...    
T Consensus         7 ~~~~Ig~i~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-------------------------~~~~~~~----   54 (277)
T 3e61_A            7 KSKLIGLLLPD---MSNPFFTLIARGVEDVALAHGYQVLIGNSD-------------------------NDIKKAQ----   54 (277)
T ss_dssp             ---CEEEEESC---TTSHHHHHHHHHHHHHHHHTTCCEEEEECT-------------------------TCHHHHH----
T ss_pred             CCCEEEEEECC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-------------------------CCHHHHH----
Confidence            35689998532   2336777777666542   45556664411                         1222222    


Q ss_pred             HHHHHHHHhCCcEEEEeCCchhhhHH-HHhccCCCCeeec-----------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          156 RKRVFLEKAGARCIVMPCHLSHIWHD-EVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTAH~~~d-~l~~~~~vPil~I-----------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      +.++.|...++|.|++...+ ...++ .+++ .++|+|-+                 ...+++++.+.|.+        +
T Consensus        55 ~~~~~l~~~~~dgiIi~~~~-~~~~~~~l~~-~~iPvV~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~  124 (277)
T 3e61_A           55 GYLATFVSHNCTGMISTAFN-ENIIENTLTD-HHIPFVFIDRINNEHNGISTNHFKGGQLQAEVVRKGKGK--------N  124 (277)
T ss_dssp             HHHHHHHHTTCSEEEECGGG-HHHHHHHHHH-C-CCEEEGGGCC---------HHHHHHHHHHHHHHTTCC--------S
T ss_pred             HHHHHHHhCCCCEEEEecCC-hHHHHHHHHc-CCCCEEEEeccCCCCCeEEechHHHHHHHHHHHHHCCCC--------e
Confidence            23456778899998887633 23345 5554 37888765                 23456667776654        8


Q ss_pred             EEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          218 IGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      |++++.+.     ..+..-|.+.++++|+
T Consensus       125 i~~i~~~~~~~~~~~R~~gf~~~l~~~~~  153 (277)
T 3e61_A          125 VLIVHENLLIDAFHQRVQGIKYILDQQRI  153 (277)
T ss_dssp             EEEEESCTTSHHHHHHHHHHHHHHHC---
T ss_pred             EEEEeCCCCCccHHHHHHHHHHHHHHcCC
Confidence            99997432     1223347777777663

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}

Probab=94.62  E-value=0.67  Score=38.73  Aligned_cols=121  Identities=12%  Similarity=0.067  Sum_probs=67.7

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      .++||++=.--   +-.||..+.+...+.   ....+++++..                         .+.+...    +
T Consensus        15 ~~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~~~----~   62 (298)
T 3tb6_A           15 NKTIGVLTTYI---SDYIFPSIIRGIESYLSEQGYSMLLTSTN-------------------------NNPDNER----R   62 (298)
T ss_dssp             CCEEEEEESCS---SSTTHHHHHHHHHHHHHHTTCEEEEEECT-------------------------TCHHHHH----H
T ss_pred             CceEEEEeCCC---CchHHHHHHHHHHHHHHHCCCEEEEEeCC-------------------------CChHHHH----H
Confidence            37899985321   224666666665532   45556665411                         1222222    3


Q ss_pred             HHHHHHHhCCcEEEEeCCch-----h-hhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCC
Q 026201          157 KRVFLEKAGARCIVMPCHLS-----H-IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLE  211 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTA-----H-~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~  211 (241)
                      .++.|...++|.|++.....     + ..++++++ .++|++-+                   ...+++++.+.|.+   
T Consensus        63 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~---  138 (298)
T 3tb6_A           63 GLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEK-NGIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLGHT---  138 (298)
T ss_dssp             HHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHH-TTCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCC---
T ss_pred             HHHHHHHCCCCEEEEecccccccCCcHHHHHHHHh-cCCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCC---
Confidence            34567788999888754322     1 34455543 36666543                   23466777777655   


Q ss_pred             CCCCCEEEEEecHHH----HhhhhHHHHHHhcCC
Q 026201          212 AGSPLRIGVLAKNAI----LTAGFYQEKLQHEDC  241 (241)
Q Consensus       212 ~~~~~rVGLLaT~~T----~~s~~Y~~~L~~~G~  241 (241)
                           +|++++.+..    .+..-|.+.++++|+
T Consensus       139 -----~i~~i~~~~~~~~~~R~~gf~~~l~~~g~  167 (298)
T 3tb6_A          139 -----HMMGIFKADDTQGVKRMNGFIQAHREREL  167 (298)
T ss_dssp             -----SEEEEEESSSHHHHHHHHHHHHHHHHTTC
T ss_pred             -----cEEEEcCCCCccHHHHHHHHHHHHHHcCC
Confidence                 8999874322    233347778877763

>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}

Probab=94.55  E-value=0.06  Score=45.25  Aligned_cols=56  Identities=11%  Similarity=0.049  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEeCCchh--hhHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          150 IVENLRRKRVFLEKAGARCIVMPCHLSH--IWHDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       150 i~~~l~~~~~~Le~~Gad~IvIaCNTAH--~~~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      ..+.+.+.++.|.+.|+|.|++.|--..  .+.+++++.+++|+|+-.+.+++.+.+.
T Consensus       159 ~~~~l~~~~~~l~~~~~d~IvLgCT~~~t~~~~~~i~~~~~vpvids~~~~a~~~~~~  216 (228)
T 2eq5_A          159 GRREVINAAKRLKEKGVEVIALGCTGMSTIGIAPVLEEEVGIPVIDPVIASGAVALHA  216 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEECCTHHHHHTCHHHHHHHHSSCEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHcCCCEEchHHHHHHHHHHH
Confidence            4455666777777789999999998887  6779998888999999999888877663

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=94.43  E-value=0.043  Score=49.35  Aligned_cols=105  Identities=14%  Similarity=0.164  Sum_probs=68.1

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      .|+.|-+||-.-....++.++|.....+....+++|.-..+                        ..+..-++.+.+.++
T Consensus       119 ~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtd------------------------a~~~~gl~~ai~ra~  174 (295)
T 1xg4_A          119 AKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTD------------------------ALAVEGLDAAIERAQ  174 (295)
T ss_dssp             SCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEEC------------------------CHHHHCHHHHHHHHH
T ss_pred             CcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecH------------------------HhhhcCHHHHHHHHH
Confidence            35555566655666778888888888765333444422110                        001000122334556


Q ss_pred             HHHHhCCcEEEEeCCchhhhHHHHhccCCCCee-eccH------HHHHHHHHhcCC
Q 026201          160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK  208 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil-~Iid------~t~~~i~~~~~k  208 (241)
                      .++++|||+|++.|-+.-..+.++.+.+++|++ |+.+      .+.+++.+.|.+
T Consensus       175 ay~eAGAd~i~~e~~~~~~~~~~i~~~~~iP~~~N~~~~g~~p~~~~~eL~~~G~~  230 (295)
T 1xg4_A          175 AYVEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVA  230 (295)
T ss_dssp             HHHHTTCSEEEETTCCSHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTTCS
T ss_pred             HHHHcCCCEEEEeCCCCHHHHHHHHHHcCCCEEEEecccCCCCCCCHHHHHHcCCC
Confidence            789999999999997654567888888899975 6663      367899999875

>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*

Probab=94.38  E-value=0.43  Score=40.43  Aligned_cols=75  Identities=13%  Similarity=0.055  Sum_probs=44.6

Q ss_pred             HHHHHHhCCcEEEEeCC-chhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMPCH-LSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCN-TAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++... .....++++.+ .++|+|-+                   ...+++++.+.|.+        |
T Consensus        65 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~  135 (289)
T 2fep_A           65 LNTMLGKQVDGIVFMGGNITDEHVAEFKR-SPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHT--------D  135 (289)
T ss_dssp             HHHHHHTTCSEEEECCSCCCHHHHHHHHH-SSSCEEEESCCCTTCCSCEEECCHHHHHHHHHHHHHHTTCS--------S
T ss_pred             HHHHHhCCCCEEEEecCCCCHHHHHHHHh-cCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------e
Confidence            35677889998887543 22334555542 35565433                   23356667766654        9


Q ss_pred             EEEEecHH----HH--hhhhHHHHHHhcCC
Q 026201          218 IGVLAKNA----IL--TAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~----T~--~s~~Y~~~L~~~G~  241 (241)
                      |++++.+.    +.  +..-|++.++++|+
T Consensus       136 I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~  165 (289)
T 2fep_A          136 IAFVSGPMAEPINRSKKLQGYKRALEEANL  165 (289)
T ss_dssp             EEEEESCTTSHHHHTTHHHHHHHHHHHTTC
T ss_pred             EEEEeCCccccccHHHHHHHHHHHHHHcCC
Confidence            99997643    21  22347788887764

>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=94.34  E-value=0.69  Score=39.21  Aligned_cols=125  Identities=10%  Similarity=0.079  Sum_probs=70.9

Q ss_pred             cCCeEEEEeCCC--hHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHH
Q 026201           79 QANTVGIVGGAS--VDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVEN  153 (241)
Q Consensus        79 ~~k~IGIIGGmG--p~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~  153 (241)
                      +.++||||=...  +..+-.||..+.+...+.   ....+++++..                         .+.+.    
T Consensus         6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~----   56 (295)
T 3hcw_A            6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSN-------------------------NMNDL----   56 (295)
T ss_dssp             CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCC-------------------------SHHHH----
T ss_pred             CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCC-------------------------CChHH----
Confidence            457899994222  444556888887777643   44555554411                         01111    


Q ss_pred             HHHHHHHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec---------------------cHHHHHHHHHhcCCCCC
Q 026201          154 LRRKRVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV---------------------SECVAKELKEANMKPLE  211 (241)
Q Consensus       154 l~~~~~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I---------------------id~t~~~i~~~~~k~~~  211 (241)
                      -.+.++.|...++|.|++.... .....+.+++ .++|+|-+                     ...+++++.+.|.+   
T Consensus        57 ~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~---  132 (295)
T 3hcw_A           57 MDEVYKMIKQRMVDAFILLYSKENDPIKQMLID-ESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIEQGVD---  132 (295)
T ss_dssp             HHHHHHHHHTTCCSEEEESCCCTTCHHHHHHHH-TTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHHHCCS---
T ss_pred             HHHHHHHHHhCCcCEEEEcCcccChHHHHHHHh-CCCCEEEECCCCccccCCceEEecCcHHHHHHHHHHHHHcCCc---
Confidence            1233456778899988775432 2234455543 24444322                     23466777777765   


Q ss_pred             CCCCCEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          212 AGSPLRIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       212 ~~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                           |||+++.+.     ..+..-|.+.++++|+
T Consensus       133 -----~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~  162 (295)
T 3hcw_A          133 -----ELIFITEKGNFEVSKDRIQGFETVASQFNL  162 (295)
T ss_dssp             -----EEEEEEESSCCHHHHHHHHHHHHHHHHTTC
T ss_pred             -----cEEEEcCCccchhHHHHHHHHHHHHHHcCC
Confidence                 999997532     2233448888888774

>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...

Probab=94.34  E-value=0.63  Score=40.39  Aligned_cols=76  Identities=9%  Similarity=0.101  Sum_probs=46.0

Q ss_pred             HHHHHHhCCcEEEEeCCch-hhhHHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTA-H~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      ++.|...++|.|++..... ....+.+++..++|++-+                    ...+++++.+.|.+        
T Consensus       107 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------  178 (340)
T 1qpz_A          107 LSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHR--------  178 (340)
T ss_dssp             HHHHHHTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEEEESSCCCSSSEEEECCHHHHHHHHHHHHHHHTCC--------
T ss_pred             HHHHHcCCCCEEEEeCCCCChHHHHHHHhhCCCCEEEEecccCCCCCCCEEEECHHHHHHHHHHHHHHCCCC--------
Confidence            4567788999888854432 334555654345665432                    23456667777655        


Q ss_pred             EEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          217 RIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      ||++++.+.     ..+..-|.+.++++|+
T Consensus       179 ~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~  208 (340)
T 1qpz_A          179 EIGVIPGPLERNTGAGRLAGFMKAMEEAMI  208 (340)
T ss_dssp             CEEEECCCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCccccHHHHHHHHHHHHHHCCC
Confidence            999997531     1223347888887764

>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A

Probab=94.30  E-value=0.43  Score=42.28  Aligned_cols=75  Identities=9%  Similarity=0.163  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHH
Q 026201          149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI  226 (241)
Q Consensus       149 ~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T  226 (241)
                      ...+.+.+.++.|.  |+|.||+.|-=.-...+++++..  ++|+|+=.+++++++++.- .........++-++.|...
T Consensus       182 ~~~~~~~~~l~~l~--g~D~iILGCTh~PlL~~~i~~~~~~~v~lIDs~~~~A~~~~~~l-~~~~~~~~~~~~~~~t~~~  258 (274)
T 3uhf_A          182 FLQSAMEYYFKNIT--TPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERE-NIDLKNHKAKLHFYASSDV  258 (274)
T ss_dssp             HHHHHHHHHHTTCC--CCSEEEECSTTGGGGHHHHHHHHCTTCEEEEHHHHHHHHHHHHS-CCCCCSSCCEEEEEESSCH
T ss_pred             HHHHHHHHHHHHhc--CCCEEEECCCChHHHHHHHHHHcCCCCEEEcCHHHHHHHHHHHH-HhcccCCCCcEEEEECCCH
Confidence            34445555555554  99999999984444568888764  7999999999999988752 1111122345667776543

>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}

Probab=94.30  E-value=0.52  Score=40.18  Aligned_cols=121  Identities=12%  Similarity=0.090  Sum_probs=69.1

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++=.-   .+-.||..+.+...+.   ....+++++..                         .+.+..    .
T Consensus        14 ~s~~Igvi~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~~----~   61 (303)
T 3kke_A           14 RSGTIGLIVPD---VNNAVFADMFSGVQMAASGHSTDVLLGQID-------------------------APPRGT----Q   61 (303)
T ss_dssp             ---CEEEEESC---TTSTTHHHHHHHHHHHHHHTTCCEEEEECC-------------------------STTHHH----H
T ss_pred             CCCEEEEEeCC---CcChHHHHHHHHHHHHHHHCCCEEEEEeCC-------------------------CChHHH----H
Confidence            35789988532   2234666666666542   45556665411                         011111    2


Q ss_pred             HHHHHHHHhCCcEEEEeCC-chhh-hHHHHhccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMPCH-LSHI-WHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSP  215 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCN-TAH~-~~d~l~~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~  215 (241)
                      +.++.|...++|.|++... .... .++.+.+  ++|+|-+                  ...+++++.+.|.+       
T Consensus        62 ~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~--~iPvV~i~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~-------  132 (303)
T 3kke_A           62 QLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE--GVPAVTINSRVPGRVGSVILDDQKGGGIATEHLITLGHS-------  132 (303)
T ss_dssp             HHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT--TSCEEEESCCCTTCCCEEEECHHHHHHHHHHHHHHTTCC-------
T ss_pred             HHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC--CCCEEEECCcCCCCCCEEEECcHHHHHHHHHHHHHCCCC-------
Confidence            2345678889998777543 3334 5677776  7777654                  23456777777655       


Q ss_pred             CEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          216 LRIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       216 ~rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                       ||++++.+.     ..+..-|.+.++++|+
T Consensus       133 -~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~  162 (303)
T 3kke_A          133 -RIAFISGTAIHDTAQRRKEGYLETLASAGL  162 (303)
T ss_dssp             -SEEEEESCSSCHHHHHHHHHHHHHHHHTTC
T ss_pred             -eEEEEeCCCcCccHHHHHHHHHHHHHHcCC
Confidence             999997532     2233447888887764

>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*

Probab=94.21  E-value=0.027  Score=48.79  Aligned_cols=106  Identities=10%  Similarity=0.143  Sum_probs=65.4

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      ..++|||||--+...+ .+|++..+.   . ...++....+.+-+.+..               ...+.+...+.+.+.+
T Consensus       105 ~~~rigVlaT~~T~~~-~~y~~~l~~---~-g~~v~~~~~~~~v~~ie~---------------g~~~~~~~~~~l~~~~  164 (254)
T 1b73_A          105 RNKKIGVIGTPATVKS-GAYQRKLEE---G-GADVFAKACPLFAPLAEE---------------GLLEGEITRKVVEHYL  164 (254)
T ss_dssp             SSCEEEEEECHHHHHH-CHHHHHHHT---T-SCEEEEEECCCCTTTSCG---------------GGGSGGGHHHHHHHHS
T ss_pred             CCCEEEEEEChHHhhh-HHHHHHHHc---C-CCEEEecCCHHHHHHHHC---------------CCCCCHHHHHHHHHHH
Confidence            4679999965444433 477777662   1 223333233332111110               1111133445566666


Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccC-CCCeeeccHHHHHHHHHh
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC-SVPFLHVSECVAKELKEA  205 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~-~vPil~Iid~t~~~i~~~  205 (241)
                      +.|.+. +|.||+.|--.-.+.+++++.+ ++|+|+-.+++++.+.+.
T Consensus       165 ~~l~~~-~d~IILGCT~~p~l~~~i~~~~~~vpviDs~~~~a~~~~~~  211 (254)
T 1b73_A          165 KEFKGK-IDTLILGCTHYPLLKKEIKKFLGDAEVVDSSEALSLSLHNF  211 (254)
T ss_dssp             TTTTTT-CSEEEECCCCTTCCHHHHHHHSCSCEEECHHHHHHHTTTTT
T ss_pred             HHHHhc-CCEEEECccChHHHHHHHHHHcCCCeEECCHHHHHHHHHHH
Confidence            666666 9999999987777789999877 899999888888877653

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}

Probab=94.16  E-value=0.67  Score=38.69  Aligned_cols=76  Identities=20%  Similarity=0.187  Sum_probs=44.8

Q ss_pred             HHHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++.... ....++.+++..++|++-+                   ...+++++.+.|.+        +
T Consensus        70 ~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~G~~--------~  141 (296)
T 3brq_A           70 IQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQ--------E  141 (296)
T ss_dssp             HHHHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCSSSGGGEECCCHHHHHHHHHHHHHHTTCC--------S
T ss_pred             HHHHHhcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEccccCCCCCCEEEEchHHHHHHHHHHHHHCCCc--------e
Confidence            355667899988775432 2344566654246676543                   12345666666544        9


Q ss_pred             EEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          218 IGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      |++++.+.     .-+..-|.+.++++|+
T Consensus       142 I~~i~~~~~~~~~~~R~~gf~~~l~~~g~  170 (296)
T 3brq_A          142 IAFLTGSMDSPTSIERLAGYKDALAQHGI  170 (296)
T ss_dssp             EEEECCCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred             EEEEcCCCCCccHHHHHHHHHHHHHHcCC
Confidence            99997542     1223347788877764

>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A

Probab=94.07  E-value=0.15  Score=44.76  Aligned_cols=52  Identities=10%  Similarity=0.097  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhCCcEEEEe-CCchhhh--HHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          154 LRRKRVFLEKAGARCIVMP-CHLSHIW--HDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       154 l~~~~~~Le~~Gad~IvIa-CNTAH~~--~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      +.+.++.|...|||.|++. |--...+  .+++++.+++|+|+-..+++.++.+.
T Consensus       196 l~~~~~~l~~~gadaIvLg~CT~l~~~~~~~~le~~lg~PVids~~a~a~~~l~~  250 (273)
T 2xed_A          196 VMAAARSLDLSEVDALVISCAVQMPSLPLVETAEREFGIPVLSAATAGAYSILRS  250 (273)
T ss_dssp             HHHHHHHSCCTTCSEEEEESSSSSCCTTHHHHHHHHHSSCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCEEEEcCCCCcchHHhHHHHHHHhCCCEEcHHHHHHHHHHHH
Confidence            4445566777899999999 9888864  68899889999999999988776654

>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}

Probab=93.95  E-value=0.77  Score=38.73  Aligned_cols=75  Identities=16%  Similarity=0.154  Sum_probs=45.0

Q ss_pred             HHHHHHhCCcEEEEeCCch-hhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTA-H~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++..... ...++.+++ .++|++-+                   ...+++++.+.|.+        |
T Consensus        60 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~  130 (290)
T 2rgy_A           60 VRFLIGRDCDGVVVISHDLHDEDLDELHR-MHPKMVFLNRAFDALPDASFCPDHRRGGELAAATLIEHGHR--------K  130 (290)
T ss_dssp             HHHHHHTTCSEEEECCSSSCHHHHHHHHH-HCSSEEEESSCCTTSGGGEECCCHHHHHHHHHHHHHHTTCC--------S
T ss_pred             HHHHHhcCccEEEEecCCCCHHHHHHHhh-cCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCc--------e
Confidence            3567788999888765432 334555543 35666543                   22355666666544        9


Q ss_pred             EEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          218 IGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      ||+++.+.     ..+..-|++.++++|+
T Consensus       131 I~~i~~~~~~~~~~~R~~Gf~~al~~~g~  159 (290)
T 2rgy_A          131 LAVISGPFTASDNVERLDGFFDELARHGI  159 (290)
T ss_dssp             EEEEESCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred             EEEEeCCCCCccHHHHHHHHHHHHHHcCC
Confidence            99997542     1223347888887763

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=93.92  E-value=0.091  Score=46.97  Aligned_cols=43  Identities=28%  Similarity=0.351  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201          152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS  195 (241)
Q Consensus       152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii  195 (241)
                      +.+.+.++.++++|||.|++.|-..- .+.+|.+.+++|+|+|.
T Consensus       173 ~~~i~rA~a~~eAGA~~ivlE~vp~~-~a~~It~~l~iP~igIG  215 (275)
T 3vav_A          173 AQLLRDARAVEEAGAQLIVLEAVPTL-VAAEVTRELSIPTIGIG  215 (275)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESCCHH-HHHHHHHHCSSCEEEES
T ss_pred             HHHHHHHHHHHHcCCCEEEecCCCHH-HHHHHHHhCCCCEEEEc
Confidence            44556678899999999999999886 88999999999999984

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=93.91  E-value=0.14  Score=46.12  Aligned_cols=105  Identities=17%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      .|+.|-++|-.-..+.++.+||.....+.+.++++|.-..+..   .                    .+.+-+.+. -++
T Consensus       123 ~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~---~--------------------~~gldeai~-Ra~  178 (298)
T 3eoo_A          123 QKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAA---A--------------------AEGIDAAIE-RAI  178 (298)
T ss_dssp             CCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTH---H--------------------HHHHHHHHH-HHH
T ss_pred             CcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhh---h--------------------hcCHHHHHH-HHH
Confidence            4556666666667788999999887765534566664422110   0                    011223333 345


Q ss_pred             HHHHhCCcEEEEeCCchhhhHHHHhccCCCCee-eccHH------HHHHHHHhcCC
Q 026201          160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSEC------VAKELKEANMK  208 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil-~Iid~------t~~~i~~~~~k  208 (241)
                      ..+++|||+|.++|-+.-.-+.++.+.+++|++ +|++-      +.+++.+.|.+
T Consensus       179 ay~~AGAD~if~~~~~~~ee~~~~~~~~~~Pl~~n~~~~g~tp~~~~~eL~~lGv~  234 (298)
T 3eoo_A          179 AYVEAGADMIFPEAMKTLDDYRRFKEAVKVPILANLTEFGSTPLFTLDELKGANVD  234 (298)
T ss_dssp             HHHHTTCSEEEECCCCSHHHHHHHHHHHCSCBEEECCTTSSSCCCCHHHHHHTTCC
T ss_pred             hhHhcCCCEEEeCCCCCHHHHHHHHHHcCCCeEEEeccCCCCCCCCHHHHHHcCCe
Confidence            567899999999998754556777778889974 66542      57899999875

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=93.78  E-value=0.18  Score=45.83  Aligned_cols=105  Identities=17%  Similarity=0.119  Sum_probs=66.6

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      .|+.|-+||-.-....++.++|.....+.+..+++|.-..+.                        ....-++.+.+.++
T Consensus       141 ~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda------------------------~a~~gl~~ai~Ra~  196 (318)
T 1zlp_A          141 PKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDA------------------------RAPHGLEEGIRRAN  196 (318)
T ss_dssp             SCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECT------------------------HHHHHHHHHHHHHH
T ss_pred             CccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHH------------------------hhhcCHHHHHHHHH
Confidence            345555555555566677778777776542244444331100                        01111223344556


Q ss_pred             HHHHhCCcEEEEeCCchhhhHHHHhccCCCCee-eccH------HHHHHHHHhcCC
Q 026201          160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK  208 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil-~Iid------~t~~~i~~~~~k  208 (241)
                      .++++|||+|++.|-..-..+.++.+.+++|++ +|.+      .+.+++.+.|.+
T Consensus       197 Ay~eAGAd~i~~e~~~~~e~~~~i~~~l~~P~lan~~~~g~~~~~~~~eL~~lGv~  252 (318)
T 1zlp_A          197 LYKEAGADATFVEAPANVDELKEVSAKTKGLRIANMIEGGKTPLHTPEEFKEMGFH  252 (318)
T ss_dssp             HHHHTTCSEEEECCCCSHHHHHHHHHHSCSEEEEEECTTSSSCCCCHHHHHHHTCC
T ss_pred             HHHHcCCCEEEEcCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCe
Confidence            789999999999997654667889999999975 6653      357899999875

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}

Probab=93.77  E-value=1.3  Score=37.07  Aligned_cols=122  Identities=13%  Similarity=0.138  Sum_probs=69.7

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++=--   .+-.||..+.+...+.   ....++++...                         .+.+..    .
T Consensus         7 ~~~~Igvv~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~~----~   54 (291)
T 3egc_A            7 RSNVVGLIVSD---IENVFFAEVASGVESEARHKGYSVLLANTA-------------------------EDIVRE----R   54 (291)
T ss_dssp             CCCEEEEEESC---TTSHHHHHHHHHHHHHHHHTTCEEEEEECT-------------------------TCHHHH----H
T ss_pred             CCcEEEEEECC---CcchHHHHHHHHHHHHHHHCCCEEEEEeCC-------------------------CCHHHH----H
Confidence            45789998522   2335777776666542   45556665411                         112222    2


Q ss_pred             HHHHHHHHhCCcEEEEeCCch-hhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP  215 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTA-H~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~  215 (241)
                      +.++.|...++|.|++..... ...++.+.+ .++|++-+                   ...+++++.+.|.+       
T Consensus        55 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~-------  126 (291)
T 3egc_A           55 EAVGQFFERRVDGLILAPSEGEHDYLRTELP-KTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIARGHT-------  126 (291)
T ss_dssp             HHHHHHHHTTCSEEEECCCSSCCHHHHHSSC-TTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHTTCC-------
T ss_pred             HHHHHHHHCCCCEEEEeCCCCChHHHHHhhc-cCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCC-------
Confidence            334567788999887765443 333444433 36776644                   23466777777655       


Q ss_pred             CEEEEEecHH---H--HhhhhHHHHHHhcCC
Q 026201          216 LRIGVLAKNA---I--LTAGFYQEKLQHEDC  241 (241)
Q Consensus       216 ~rVGLLaT~~---T--~~s~~Y~~~L~~~G~  241 (241)
                       +|++++...   +  .+..-|++.++++|+
T Consensus       127 -~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~  156 (291)
T 3egc_A          127 -RIGAIVGSAGLMTSRERLKGFRAAMSAAGL  156 (291)
T ss_dssp             -SEEEECSCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             -EEEEEeCCCCCcCHHHHHHHHHHHHHHcCC
Confidence             999997543   1  223347777877663

>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}

Probab=93.76  E-value=0.22  Score=43.94  Aligned_cols=109  Identities=10%  Similarity=0.130  Sum_probs=64.5

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      +.++|||||--+...+ .+|++..+....+  ..+.-...|.+-+.+.....           ..+..    .+.+.+.+
T Consensus       126 ~~~rIgVLaT~~T~~s-~~y~~~l~~~g~~--~~v~~~~~~~lv~~ie~~~~-----------~~~~~----~~~l~~~l  187 (285)
T 2jfn_A          126 ANGIVGLLATRGTVKR-SYTHELIARFANE--CQIEMLGSAEMVELAEAKLH-----------GEDVS----LDALKRIL  187 (285)
T ss_dssp             SSSEEEEEECTTGGGC-HHHHHHHHHSCTT--SEEEEEECHHHHHHHHHHHH-----------TCCCC----HHHHHHHT
T ss_pred             CCCEEEEEEcHHHHhh-HHHHHHHHHhCCC--CEEeCCCCHHHHHHHHhccc-----------CCHHH----HHHHHHHH
Confidence            4679999987666544 4566666554322  22222222222111111000           01112    23344445


Q ss_pred             HHHHH--hCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHHh
Q 026201          159 VFLEK--AGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA  205 (241)
Q Consensus       159 ~~Le~--~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~~  205 (241)
                      +.|.+  .|+|.||+.|--...+.+++++.+  ++|+|+-.+++++++.+.
T Consensus       188 ~~l~~~~~~~D~IVLGCTh~p~l~~~i~~~lg~~vpviDs~~a~a~~~~~~  238 (285)
T 2jfn_A          188 RPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWL  238 (285)
T ss_dssp             HHHHTCSSCCSEEEECSTTGGGGHHHHHHHSCTTCEEECSHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEEeCCCcHHHHHHHHHhcCCCCEEECcHHHHHHHHHHH
Confidence            55654  589999999986666779999876  499999999988887653

>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}

Probab=93.75  E-value=1.2  Score=38.48  Aligned_cols=125  Identities=16%  Similarity=0.122  Sum_probs=69.7

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++=.-. .-+-.||..+.+...+.   ....+++++..                         .+.+...    
T Consensus        60 ~~~~Igvi~~~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~~~----  109 (338)
T 3dbi_A           60 STQTLGLVVTNT-LYHGIYFSELLFHAARMAEEKGRQLLLADGK-------------------------HSAEEER----  109 (338)
T ss_dssp             CCSEEEEEECTT-TTSTTHHHHHHHHHHHHHHHTTCEEEEEECT-------------------------TSHHHHH----
T ss_pred             CCCEEEEEecCC-cccChhHHHHHHHHHHHHHHCCCEEEEEeCC-------------------------CChHHHH----
Confidence            357899985321 12235677776666542   45556655411                         1112222    


Q ss_pred             HHHHHHHHhCCcEEEEeCCch-hhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP  215 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTA-H~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~  215 (241)
                      +.++.|...++|.|++..... ...+.++.+..++|++-+                   ...+++++.+.|.+       
T Consensus       110 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------  182 (338)
T 3dbi_A          110 QAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQ-------  182 (338)
T ss_dssp             HHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHHHHHHHHHHHHHHTTCC-------
T ss_pred             HHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChHHHHHHHHHHHHHCCCC-------
Confidence            234567788999888865432 222333444456665543                   22456677777655       


Q ss_pred             CEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          216 LRIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       216 ~rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                       +||+++.+.     ..+..-|.+.++++|+
T Consensus       183 -~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~  212 (338)
T 3dbi_A          183 -EIAFLTGSMDSPTSIERLAGYKDALAQHGI  212 (338)
T ss_dssp             -SEEEECCCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             -EEEEEeCCCCCccHHHHHHHHHHHHHHCCC
Confidence             999996531     1233448888888764

>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A

Probab=93.66  E-value=2.7  Score=36.07  Aligned_cols=77  Identities=9%  Similarity=0.016  Sum_probs=48.2

Q ss_pred             HHHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec-------------------------cHHHHHHHHHh-cCCC
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV-------------------------SECVAKELKEA-NMKP  209 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I-------------------------id~t~~~i~~~-~~k~  209 (241)
                      .++.|...+++.|+.|..+.... ...+.+..++|+|..                         ....++++.+. +.+ 
T Consensus        61 ~~~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-  139 (356)
T 3ipc_A           61 VANKFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDA-  139 (356)
T ss_dssp             HHHHHHHTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHHHCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCC-
Confidence            33456668999999887665543 344555667887762                         12344556555 544 


Q ss_pred             CCCCCCCEEEEEecHHH---HhhhhHHHHHHhcCC
Q 026201          210 LEAGSPLRIGVLAKNAI---LTAGFYQEKLQHEDC  241 (241)
Q Consensus       210 ~~~~~~~rVGLLaT~~T---~~s~~Y~~~L~~~G~  241 (241)
                             ||++++.+..   -...-|++.+++.|+
T Consensus       140 -------~iaii~~~~~~~~~~~~~~~~~l~~~g~  167 (356)
T 3ipc_A          140 -------KVAIIHDKTPYGQGLADETKKAANAAGV  167 (356)
T ss_dssp             -------CEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred             -------EEEEEeCCChHHHHHHHHHHHHHHHcCC
Confidence                   9999987432   234457888887764

>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}

Probab=93.66  E-value=3  Score=36.06  Aligned_cols=75  Identities=12%  Similarity=0.119  Sum_probs=43.7

Q ss_pred             HHHHHh-CCcEEEEeCCchhhh-HHHHhccCCCCeeecc------------------------HHHHHHHHHh-cCCCCC
Q 026201          159 VFLEKA-GARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS------------------------ECVAKELKEA-NMKPLE  211 (241)
Q Consensus       159 ~~Le~~-Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Ii------------------------d~t~~~i~~~-~~k~~~  211 (241)
                      +.|... +++.|+-|..+.... ...+.+..++|+|...                        ...++.+.+. +.    
T Consensus        74 ~~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~----  149 (366)
T 3td9_A           74 ARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVFAYKNLGA----  149 (366)
T ss_dssp             HHHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEESSCCHHHHHHHHHHHHHHTSCC----
T ss_pred             HHHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEEeCCcHHHHHHHHHHHHHhcCC----
Confidence            445555 599999876655432 3444455678877642                        1234445443 43    


Q ss_pred             CCCCCEEEEEe---cHHHH-hhhhHHHHHHhcCC
Q 026201          212 AGSPLRIGVLA---KNAIL-TAGFYQEKLQHEDC  241 (241)
Q Consensus       212 ~~~~~rVGLLa---T~~T~-~s~~Y~~~L~~~G~  241 (241)
                          +||+++.   ++... ....|++.+++.|+
T Consensus       150 ----~~iaii~~~~~~~~~~~~~~~~~~~~~~G~  179 (366)
T 3td9_A          150 ----KRVVVFTDVEQDYSVGLSNFFINKFTELGG  179 (366)
T ss_dssp             ----CEEEEEEETTCHHHHHHHHHHHHHHHHTTC
T ss_pred             ----cEEEEEEeCCCcHHHHHHHHHHHHHHHCCC
Confidence                4999994   23222 23557888888774

>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}

Probab=93.66  E-value=0.31  Score=41.32  Aligned_cols=119  Identities=13%  Similarity=0.123  Sum_probs=69.4

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++=.    .+-.||..+.+...+.   ....+++++...          +            . +.       .
T Consensus        11 ~~~~Igvi~~----~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----------~------------~-~~-------~   56 (289)
T 3k9c_A           11 SSRLLGVVFE----LQQPFHGDLVEQIYAAATRRGYDVMLSAVAP----------S------------R-AE-------K   56 (289)
T ss_dssp             --CEEEEEEE----TTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT----------T------------B-CH-------H
T ss_pred             CCCEEEEEEe----cCCchHHHHHHHHHHHHHHCCCEEEEEeCCC----------C------------H-HH-------H
Confidence            3578999962    2446777777776643   455566554110          0            0 00       1


Q ss_pred             HHHHHHHHhCCcEEEEeC-CchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMPC-HLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP  215 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaC-NTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~  215 (241)
                      +.++.|...++|.|++.. +.....++.+.+  ++|+|-+                   ...+++++.+.|.+       
T Consensus        57 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~--~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------  127 (289)
T 3k9c_A           57 VAVQALMRERCEAAILLGTRFDTDELGALAD--RVPALVVARASGLPGVGAVRGDDVAGITLAVDHLTELGHR-------  127 (289)
T ss_dssp             HHHHHHTTTTEEEEEEETCCCCHHHHHHHHT--TSCEEEESSCCSSTTSEEEEECHHHHHHHHHHHHHHTTCC-------
T ss_pred             HHHHHHHhCCCCEEEEECCCCCHHHHHHHHc--CCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHCCCC-------
Confidence            223456778999777664 444445566654  6777654                   22456777777655       


Q ss_pred             CEEEEEecHH----HHhhhhHHHHHHhcCC
Q 026201          216 LRIGVLAKNA----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       216 ~rVGLLaT~~----T~~s~~Y~~~L~~~G~  241 (241)
                       |||+++.+.    ..+..-|.+.++++|+
T Consensus       128 -~I~~i~~~~~~~~~~R~~Gf~~al~~~g~  156 (289)
T 3k9c_A          128 -NIAHIDGADAPGGADRRAGFLAAMDRHGL  156 (289)
T ss_dssp             -SEEEECCTTSTTHHHHHHHHHHHHHHTTC
T ss_pred             -cEEEEeCCCCccHHHHHHHHHHHHHHCCC
Confidence             999998653    2233447788877764

>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*

Probab=93.59  E-value=0.29  Score=42.20  Aligned_cols=51  Identities=14%  Similarity=-0.011  Sum_probs=40.9

Q ss_pred             HHHHHH-H-HHhCCcEEEEeCCchhhh--HHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          155 RRKRVF-L-EKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       155 ~~~~~~-L-e~~Gad~IvIaCNTAH~~--~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      .+.++. | ...|||.|++.|--...+  .+++++.+++|+++...+++.++.+.
T Consensus       168 ~~~~~~~l~~~~~adaivL~CT~l~~l~~i~~le~~lg~PVids~~a~~w~~lr~  222 (240)
T 3ixl_A          168 VDLCVRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGVPVVSSSPAGFWDAVRL  222 (240)
T ss_dssp             HHHHHHHHHTSTTCSEEEEECTTSCCTTHHHHHHHHHSSCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCCEEEEeCCCCchhhhHHHHHHHhCCCEEeHHHHHHHHHHHH
Confidence            344455 6 678999999999766665  48899999999999999988877764

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=93.49  E-value=0.11  Score=46.69  Aligned_cols=52  Identities=12%  Similarity=0.219  Sum_probs=42.2

Q ss_pred             HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccH------HHHHHHHHhcCC
Q 026201          156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE------CVAKELKEANMK  208 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid------~t~~~i~~~~~k  208 (241)
                      +.++.++++|||+|+++|-+.-..+.++.+.+++|++ |++      .+.+++.+.|.+
T Consensus       172 ~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~~P~i-i~~~g~~~~~~~~eL~~lGv~  229 (287)
T 3b8i_A          172 QRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLM-LVTYGNPQLRDDARLARLGVR  229 (287)
T ss_dssp             HHHHHHHHTTCSEEEEECCCSHHHHHHHHTTCCSCEE-EECTTCGGGCCHHHHHHTTEE
T ss_pred             HHHHHHHHcCCCEEEecCCCCHHHHHHHHHhCCCCEE-EeCCCCCCCCCHHHHHHcCCc
Confidence            3446789999999999997555677899999999999 753      368899998874

>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}

Probab=93.34  E-value=0.41  Score=39.72  Aligned_cols=75  Identities=13%  Similarity=0.161  Sum_probs=42.7

Q ss_pred             HHHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++. ++.....++.+++ .++|++-+                   ...+++++.+.|.+        |
T Consensus        52 ~~~l~~~~vdgii~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~  122 (275)
T 3d8u_A           52 LSTFLESRPAGVVLFGSEHSQRTHQLLEA-SNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFK--------N  122 (275)
T ss_dssp             HHHHHTSCCCCEEEESSCCCHHHHHHHHH-HTCCEEEESSSCSSSSSEEECBCHHHHHHHHHHHHHTTTCC--------C
T ss_pred             HHHHHhcCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEEeeccCCCCCCEEEEChHHHHHHHHHHHHHCCCC--------e
Confidence            345677889976664 3333344555543 35665533                   22345555555543        9


Q ss_pred             EEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          218 IGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      |++++.+.     ..+..-|.+.++++|+
T Consensus       123 i~~i~~~~~~~~~~~R~~gf~~~l~~~g~  151 (275)
T 3d8u_A          123 VGFIGARGNHSTLQRQLHGWQSAMIENYL  151 (275)
T ss_dssp             EEEEECSCSSHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEcCCCCCchHHHHHHHHHHHHHHcCC
Confidence            99997642     1233447788887763

>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}

Probab=93.19  E-value=0.9  Score=39.38  Aligned_cols=76  Identities=13%  Similarity=0.209  Sum_probs=46.6

Q ss_pred             HHHHHHHhCCcEEEEeCCchh-hhHHHHhccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          157 KRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH-~~~d~l~~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      .++.|...++|.|++...... ...+.+++ .++|++-+                  ...+++++.+.|.+        |
T Consensus       110 ~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~  180 (339)
T 3h5o_A          110 LLRAYLQHRPDGVLITGLSHAEPFERILSQ-HALPVVYMMDLADDGRCCVGFSQEDAGAAITRHLLSRGKR--------R  180 (339)
T ss_dssp             HHHHHHTTCCSEEEEECSCCCTTHHHHHHH-TTCCEEEEESCCSSSCCEEECCHHHHHHHHHHHHHHTTCC--------S
T ss_pred             HHHHHHcCCCCEEEEeCCCCCHHHHHHHhc-CCCCEEEEeecCCCCCeEEEECHHHHHHHHHHHHHHCCCC--------e
Confidence            345677889998877654332 33444443 46777654                  23456777777765        9


Q ss_pred             EEEEecHH--H--HhhhhHHHHHHhcCC
Q 026201          218 IGVLAKNA--I--LTAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~--T--~~s~~Y~~~L~~~G~  241 (241)
                      ||+++.+.  +  .+..-|.+.++++|+
T Consensus       181 I~~i~~~~~~~~~~R~~Gf~~al~~~g~  208 (339)
T 3h5o_A          181 IGFLGAQLDERVMKRLDGYRAALDAADC  208 (339)
T ss_dssp             EEEEEESCCHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHHCCC
Confidence            99997542  1  222337788877764

>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}

Probab=93.19  E-value=1.7  Score=37.87  Aligned_cols=76  Identities=8%  Similarity=0.121  Sum_probs=46.7

Q ss_pred             HHHHHHHhCCcEEEEeCCch-hhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          157 KRVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTA-H~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      .++.|...++|.|++..... ....+.+.+ .++|++-+                   ...+++++.+.|.+        
T Consensus       118 ~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~r--------  188 (355)
T 3e3m_A          118 LVETMLRRRPEAMVLSYDGHTEQTIRLLQR-ASIPIVEIWEKPAHPIGHTVGFSNERAAYDMTNALLARGFR--------  188 (355)
T ss_dssp             HHHHHHHTCCSEEEEECSCCCHHHHHHHHH-CCSCEEEESSCCSSCSSEEEECCHHHHHHHHHHHHHHTTCC--------
T ss_pred             HHHHHHhCCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------
Confidence            34567788999887764332 233444443 46676644                   12456677777655        


Q ss_pred             EEEEEecH------HHHhhhhHHHHHHhcCC
Q 026201          217 RIGVLAKN------AILTAGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~------~T~~s~~Y~~~L~~~G~  241 (241)
                      |||+++.+      ...+..-|.+.++++|+
T Consensus       189 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~  219 (355)
T 3e3m_A          189 KIVFLGEKDDDWTRGAARRAGFKRAMREAGL  219 (355)
T ss_dssp             SEEEEEESSCTTSHHHHHHHHHHHHHHHTTS
T ss_pred             eEEEEccCcccChhHHHHHHHHHHHHHHCCc
Confidence            99999753      22344458888888774

>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}

Probab=93.18  E-value=0.25  Score=41.77  Aligned_cols=74  Identities=16%  Similarity=0.124  Sum_probs=44.1

Q ss_pred             HHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCEE
Q 026201          159 VFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRI  218 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~rV  218 (241)
                      +.|...++|.|++.... ....++.+++ .++|+|-+                   ...+++++.+.|.+        ||
T Consensus        58 ~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~I  128 (287)
T 3bbl_A           58 DLIRSGNVDGFVLSSINYNDPRVQFLLK-QKFPFVAFGRSNPDWDFAWVDIDGTAGTRQAVEYLIGRGHR--------RI  128 (287)
T ss_dssp             HHHHTTCCSEEEECSCCTTCHHHHHHHH-TTCCEEEESCCSTTCCCCEEEECHHHHHHHHHHHHHHHTCC--------CE
T ss_pred             HHHHcCCCCEEEEeecCCCcHHHHHHHh-cCCCEEEECCcCCCCCCCEEEeccHHHHHHHHHHHHHCCCC--------eE
Confidence            45677899988775432 2334455543 35665533                   23455667776655        99


Q ss_pred             EEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          219 GVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       219 GLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      ++++.+.     ..+..-|.+.++++|+
T Consensus       129 ~~i~~~~~~~~~~~R~~Gf~~~l~~~g~  156 (287)
T 3bbl_A          129 AILAWPEDSRVGNDRLQGYLEAMQTAQL  156 (287)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeCCcccccHHHHHHHHHHHHHHcCC
Confidence            9997542     1233447888887764

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=93.17  E-value=1.4  Score=36.86  Aligned_cols=125  Identities=11%  Similarity=0.145  Sum_probs=68.7

Q ss_pred             cCCeEEEEeCCChH--HHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHH
Q 026201           79 QANTVGIVGGASVD--STLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVEN  153 (241)
Q Consensus        79 ~~k~IGIIGGmGp~--AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~  153 (241)
                      +.++||++=.....  .+-.||..+.+...+.   ....++++...                         .+.+.    
T Consensus         7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~----   57 (292)
T 3k4h_A            7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGE-------------------------TEEEI----   57 (292)
T ss_dssp             CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCC-------------------------SHHHH----
T ss_pred             CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCC-------------------------CCHHH----
Confidence            46789998543110  2335777776666542   44555554311                         01111    


Q ss_pred             HHHHHHHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCC
Q 026201          154 LRRKRVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEA  212 (241)
Q Consensus       154 l~~~~~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~  212 (241)
                      ..+.++.|...++|.|++.... ....++.+.+ .++|+|-+                    ...+++++.+.|.+    
T Consensus        58 ~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~----  132 (292)
T 3k4h_A           58 FNGVVKMVQGRQIGGIILLYSRENDRIIQYLHE-QNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHK----  132 (292)
T ss_dssp             HHHHHHHHHTTCCCEEEESCCBTTCHHHHHHHH-TTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHHTTCC----
T ss_pred             HHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHH-CCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc----
Confidence            1233456778899987775433 3344555543 25555432                    23566677777655    


Q ss_pred             CCCCEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          213 GSPLRIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       213 ~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                          +|++++.+.     ..+..-|.+.++++|+
T Consensus       133 ----~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~  162 (292)
T 3k4h_A          133 ----QIAFIGGGSDLLVTRDRLAGMSDALKLADI  162 (292)
T ss_dssp             ----CEEEEESCTTBHHHHHHHHHHHHHHHHTTC
T ss_pred             ----eEEEEeCcccchhHHHHHHHHHHHHHHcCC
Confidence                999997542     1233447788877764

>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}

Probab=93.03  E-value=0.7  Score=38.93  Aligned_cols=74  Identities=14%  Similarity=0.139  Sum_probs=45.6

Q ss_pred             HHHHHhCCcEEEEeCCchh-hhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCEE
Q 026201          159 VFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRI  218 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH-~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~rV  218 (241)
                      +.|...++|.|++...... ..++.+++ .++|+|-+                   ...+++++.+.|.+        ||
T Consensus        60 ~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~I  130 (288)
T 3gv0_A           60 YILETGSADGVIISKIEPNDPRVRFMTE-RNMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQCGRK--------RI  130 (288)
T ss_dssp             HHHHHTCCSEEEEESCCTTCHHHHHHHH-TTCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHHTTCC--------EE
T ss_pred             HHHHcCCccEEEEecCCCCcHHHHHHhh-CCCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHHCCCC--------eE
Confidence            3466789998877643322 34555553 35665543                   33566777777655        99


Q ss_pred             EEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          219 GVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       219 GLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      ++++.+.     ..+..-|.+.++++|+
T Consensus       131 ~~i~~~~~~~~~~~R~~gf~~~l~~~g~  158 (288)
T 3gv0_A          131 AVIVPPSRFSFHDHARKGFNRGIRDFGL  158 (288)
T ss_dssp             EEECCCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEcCCcccchHHHHHHHHHHHHHHcCC
Confidence            9997542     2233447788877763

>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}

Probab=93.03  E-value=0.77  Score=39.03  Aligned_cols=125  Identities=9%  Similarity=0.101  Sum_probs=69.8

Q ss_pred             cCCeEEEEeCCChH--HHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHH
Q 026201           79 QANTVGIVGGASVD--STLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVEN  153 (241)
Q Consensus        79 ~~k~IGIIGGmGp~--AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~  153 (241)
                      +.++||++=.-...  .+-.||..+.+...+.   ....+++++..                         .+.+.    
T Consensus        21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~----   71 (305)
T 3huu_A           21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSE-------------------------NSGDL----   71 (305)
T ss_dssp             CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCS-------------------------SHHHH----
T ss_pred             CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCC-------------------------CChHH----
Confidence            46789998433111  3446777777776643   34455554411                         01111    


Q ss_pred             HHHHHHHHHHhCCcEEEEeC-CchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCC
Q 026201          154 LRRKRVFLEKAGARCIVMPC-HLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAG  213 (241)
Q Consensus       154 l~~~~~~Le~~Gad~IvIaC-NTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~  213 (241)
                      -.+.++.|...++|.|++.. +.....++.+++ .++|+|-+                   ...+++++.+.|.+     
T Consensus        72 ~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~-----  145 (305)
T 3huu_A           72 YHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNE-FKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHR-----  145 (305)
T ss_dssp             HHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHH-TTCCEEEESCCCSSTTCCEEECCHHHHHHHHHHHHHHTTCC-----
T ss_pred             HHHHHHHHHhCCCCEEEEeCCcCCcHHHHHHHH-cCCCEEEECCCCcccCCcEEEeCHHHHHHHHHHHHHHCCCC-----
Confidence            12334567788999877754 333334455543 25555543                   23456777777655     


Q ss_pred             CCCEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          214 SPLRIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       214 ~~~rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                         ||++++.+.     ..+..-|.+.++++|+
T Consensus       146 ---~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~  175 (305)
T 3huu_A          146 ---HILFLQESGHYAVTEDRSVGFKQYCDDVKI  175 (305)
T ss_dssp             ---SEEEEEESSCBHHHHHHHHHHHHHHHHTTC
T ss_pred             ---eEEEEcCCcccchhHHHHHHHHHHHHHcCC
Confidence               999997532     1233447888887764

>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}

Probab=92.68  E-value=1.9  Score=37.14  Aligned_cols=75  Identities=7%  Similarity=0.005  Sum_probs=46.6

Q ss_pred             HHHH-HhCCcEEEEeCCchhhh-HHHHhccCCCCeeec------------------------cHHHHHHHHHhcCCCCCC
Q 026201          159 VFLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV------------------------SECVAKELKEANMKPLEA  212 (241)
Q Consensus       159 ~~Le-~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I------------------------id~t~~~i~~~~~k~~~~  212 (241)
                      +.|. +.+++.|+.+..+.... ...+.+..++|+|..                        ....++.+.+.|.+    
T Consensus        65 ~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----  140 (358)
T 3hut_A           65 RAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFT----  140 (358)
T ss_dssp             HHHHHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHHHHHHHTTCC----
T ss_pred             HHHhccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHHHHHHHHcCCC----
Confidence            4455 78999999886654432 233334457777764                        12355666666554    


Q ss_pred             CCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201          213 GSPLRIGVLAKNAIL---TAGFYQEKLQHEDC  241 (241)
Q Consensus       213 ~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~  241 (241)
                          ||++++.+...   ...-|++.+++.|+
T Consensus       141 ----~ia~i~~~~~~~~~~~~~~~~~l~~~g~  168 (358)
T 3hut_A          141 ----SVAVIGVTTDWGLSSAQAFRKAFELRGG  168 (358)
T ss_dssp             ----EEEEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred             ----EEEEEecCcHHHHHHHHHHHHHHHHcCC
Confidence                99999744322   34457788887764

>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}

Probab=92.55  E-value=1.3  Score=38.30  Aligned_cols=122  Identities=15%  Similarity=0.097  Sum_probs=67.1

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++-.-   -+-.||..+.+...+.   ....+++++..                         .+.+...    
T Consensus        62 ~~~~Ig~i~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-------------------------~~~~~~~----  109 (332)
T 2o20_A           62 RTTTVGVILPT---ITSTYFAAITRGVDDIASMYKYNMILANSD-------------------------NDVEKEE----  109 (332)
T ss_dssp             CCCEEEEEESC---TTCHHHHHHHHHHHHHHHHTTCEEEEEECT-------------------------TCHHHHH----
T ss_pred             CCCEEEEEeCC---CCCcHHHHHHHHHHHHHHHcCCEEEEEECC-------------------------CChHHHH----
Confidence            45789998532   1235777777666542   44555554411                         1112222    


Q ss_pred             HHHHHHHHhCCcEEEEeCCch-hhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP  215 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTA-H~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~  215 (241)
                      +.++.|...++|.|++..... ...++.+++ .++|++-+                   ...+++++.+.|.+       
T Consensus       110 ~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------  181 (332)
T 2o20_A          110 KVLETFLSKQVDGIVYMGSSLDEKIRTSLKN-SRTPVVLVGTIDGDKEIPSVNIDYHLAAYQSTKKLIDSGNK-------  181 (332)
T ss_dssp             HHHHHHHHTTCSEEEECSSCCCHHHHHHHHH-HCCCEEEESCCCTTSCSCEEECCHHHHHHHHHHHHHHTTCS-------
T ss_pred             HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEEccccCCCCCCEEEeChHHHHHHHHHHHHHCCCC-------
Confidence            233456778999887765322 234455542 24554432                   23456667776655       


Q ss_pred             CEEEEEecHH---H--HhhhhHHHHHHhcCC
Q 026201          216 LRIGVLAKNA---I--LTAGFYQEKLQHEDC  241 (241)
Q Consensus       216 ~rVGLLaT~~---T--~~s~~Y~~~L~~~G~  241 (241)
                       |||+++.+.   +  .+..-|.+.++++|+
T Consensus       182 -~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~  211 (332)
T 2o20_A          182 -KIAYIMGSLKDVENTERMVGYQEALLEANI  211 (332)
T ss_dssp             -SEEEECSCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             -eEEEEeCCcccccHHHHHHHHHHHHHHcCC
Confidence             999997642   1  223347888887764

>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*

Probab=92.50  E-value=3.2  Score=35.24  Aligned_cols=75  Identities=7%  Similarity=0.066  Sum_probs=43.6

Q ss_pred             HHHHHHhCCcEEEEeCCchhh---hHHHHhccCCCCeeec--------------------cHHHHHHHHHh--cCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHV--------------------SECVAKELKEA--NMKPLEA  212 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~---~~d~l~~~~~vPil~I--------------------id~t~~~i~~~--~~k~~~~  212 (241)
                      ++.|...++|.|++.......   .++.+++ .++|+|-+                    ...+++++.+.  |.+    
T Consensus        50 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~----  124 (313)
T 2h3h_A           50 LESFIAEGVNGIAIAPSDPTAVIPTIKKALE-MGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLGGKG----  124 (313)
T ss_dssp             HHHHHHTTCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHHTSCS----
T ss_pred             HHHHHHcCCCEEEEeCCChHHHHHHHHHHHH-CCCeEEEeCCCCCCcceeEEECcCHHHHHHHHHHHHHHHcCCCC----
Confidence            345667899988875544432   3444432 35665532                    22345666665  544    


Q ss_pred             CCCCEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          213 GSPLRIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       213 ~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                          ||++++.+.     ..+..-|++.+++.|+
T Consensus       125 ----~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~  154 (313)
T 2h3h_A          125 ----KVVIGTGSLTAMNSLQRIQGFKDAIKDSEI  154 (313)
T ss_dssp             ----EEEEEESCSSCHHHHHHHHHHHHHHTTSSC
T ss_pred             ----EEEEEECCCCCccHHHHHHHHHHHhcCCCC
Confidence                999997541     2233447777777663

>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1

Probab=92.43  E-value=0.66  Score=38.18  Aligned_cols=74  Identities=8%  Similarity=0.052  Sum_probs=43.2

Q ss_pred             HHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec-----------------cHHHHHHHHHhcCCCCCCCCCCEEEE
Q 026201          158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRIGV  220 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I-----------------id~t~~~i~~~~~k~~~~~~~~rVGL  220 (241)
                      ++.|...++|.|++....... .+.+++ .++|++-+                 ...+++++.+.|.+        ||++
T Consensus        51 ~~~l~~~~vdgiI~~~~~~~~-~~~l~~-~~~pvV~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~I~~  120 (255)
T 1byk_A           51 LGVLKRRNIDGVVLFGFTGIT-EEMLAH-WQSSLVLLARDAKGFASVCYDDEGAIKILMQRLYDQGHR--------NISY  120 (255)
T ss_dssp             HHHHHTTTCCEEEEECCTTCC-TTTSGG-GSSSEEEESSCCSSCEEEEECHHHHHHHHHHHHHHTTCC--------CEEE
T ss_pred             HHHHHhcCCCEEEEecCcccc-HHHHHh-cCCCEEEEccccCCCCEEEEccHHHHHHHHHHHHHcCCC--------eEEE
Confidence            356778899987775432111 122332 35666543                 23466777777655        9999


Q ss_pred             EecH--H----HHhhhhHHHHHHhcCC
Q 026201          221 LAKN--A----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       221 LaT~--~----T~~s~~Y~~~L~~~G~  241 (241)
                      ++.+  .    ..+..-|++.++++|+
T Consensus       121 i~~~~~~~~~~~~R~~gf~~al~~~g~  147 (255)
T 1byk_A          121 LGVPHSDVTTGKRRHEAYLAFCKAHKL  147 (255)
T ss_dssp             ECCCTTSTTTTHHHHHHHHHHHHHTTC
T ss_pred             EecCCCCcccHHHHHHHHHHHHHHcCC
Confidence            9853  1    1233447888888764

>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}

Probab=92.42  E-value=0.72  Score=38.80  Aligned_cols=74  Identities=11%  Similarity=0.099  Sum_probs=41.6

Q ss_pred             HHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCCCEEE
Q 026201          159 VFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLRIG  219 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~~rVG  219 (241)
                      +.|...++|.|++.... ....++.+++ .++|+|-+                  ...+++++.+.|.+        ||+
T Consensus        59 ~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~i~  129 (290)
T 3clk_A           59 LTAIERPVMGILLLSIALTDDNLQLLQS-SDVPYCFLSMGFDDDRPFISSDDEDIGYQATNLLINEGHR--------QIG  129 (290)
T ss_dssp             HHHHSSCCSEEEEESCC----CHHHHHC-C--CEEEESCC--CCSCEEECCHHHHHHHHHHHHHTTTCC--------SEE
T ss_pred             HHHHhcCCCEEEEecccCCHHHHHHHHh-CCCCEEEEcCCCCCCCCEEEeChHHHHHHHHHHHHHcCCC--------EEE
Confidence            45667899987775433 2344566654 46676543                  22344555555543        899


Q ss_pred             EEecH-----HHHhhhhHHHHHHhcCC
Q 026201          220 VLAKN-----AILTAGFYQEKLQHEDC  241 (241)
Q Consensus       220 LLaT~-----~T~~s~~Y~~~L~~~G~  241 (241)
                      +++.+     ...+..-|.+.++++|+
T Consensus       130 ~i~~~~~~~~~~~R~~gf~~~l~~~g~  156 (290)
T 3clk_A          130 IAGIDQYPYTGRKRLAGYKKALKEANI  156 (290)
T ss_dssp             EESCCCCTTTHHHHHHHHHHHHHHTTC
T ss_pred             EEeCCCCCcchHHHHHHHHHHHHHcCC
Confidence            99754     12334457888887764

>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A

Probab=92.40  E-value=0.27  Score=43.23  Aligned_cols=55  Identities=15%  Similarity=0.145  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          151 VENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       151 ~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      .+.+.+.++.|.+.|+|.||+.|-=.-...+++.+..++|+|+-.+.+++++.+.
T Consensus       195 ~~~l~~~l~~l~~~g~d~vILGCTh~pll~~~l~~~~~v~viDs~~~~A~~~~~~  249 (268)
T 3s81_A          195 QALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLVRAAIRW  249 (268)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECSTTHHHHHTTTGGGSSSCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHhcCCCCeEEccHHHHHHHHHHH
Confidence            5567777788888999999999985555567777778999999999999998875

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=92.35  E-value=0.39  Score=43.37  Aligned_cols=105  Identities=18%  Similarity=0.155  Sum_probs=63.0

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK  157 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~  157 (241)
                      .|+.|-++|-.-..+.++.+||.....+.  ..++++|.-..+.   +..                 ..   +-+.+. -
T Consensus       128 ~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa---~~~-----------------~g---ldeAi~-R  183 (307)
T 3lye_A          128 TKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDA---LQS-----------------LG---YEECIE-R  183 (307)
T ss_dssp             CC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECC---HHH-----------------HC---HHHHHH-H
T ss_pred             CcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechh---hhc-----------------cC---HHHHHH-H
Confidence            57788888877778889999998887754  3466776542211   000                 01   222232 3


Q ss_pred             HHHHHHhCCcEEEEeCCchhhhHHHHhccCC-CCee-eccH------HHHHHHHHhcCC
Q 026201          158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCS-VPFL-HVSE------CVAKELKEANMK  208 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~-vPil-~Iid------~t~~~i~~~~~k  208 (241)
                      ++..+++|||+|.++|-+.-.-+.++.+.++ +|++ +|++      .+.+++.+.|.+
T Consensus       184 a~ay~eAGAD~ifi~~~~~~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~t~~eL~~lGv~  242 (307)
T 3lye_A          184 LRAARDEGADVGLLEGFRSKEQAAAAVAALAPWPLLLNSVENGHSPLITVEEAKAMGFR  242 (307)
T ss_dssp             HHHHHHTTCSEEEECCCSCHHHHHHHHHHHTTSCBEEEEETTSSSCCCCHHHHHHHTCS
T ss_pred             HHHHHHCCCCEEEecCCCCHHHHHHHHHHccCCceeEEeecCCCCCCCCHHHHHHcCCe
Confidence            3456789999999999876555677777664 8864 6654      257899999886

>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}

Probab=92.30  E-value=0.87  Score=38.36  Aligned_cols=122  Identities=11%  Similarity=0.173  Sum_probs=65.3

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++---   .+-.||..+.+...+.   ....+++++..                         .+.+...    
T Consensus        19 ~~~~Ig~i~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-------------------------~~~~~~~----   66 (293)
T 2iks_A           19 RTRSIGLVIPD---LENTSYTRIANYLERQARQRGYQLLIACSE-------------------------DQPDNEM----   66 (293)
T ss_dssp             CCCEEEEEESC---SCSHHHHHHHHHHHHHHHHTTCEEEEEECT-------------------------TCHHHHH----
T ss_pred             CCcEEEEEeCC---CcCcHHHHHHHHHHHHHHHCCCEEEEEcCC-------------------------CCHHHHH----
Confidence            35789998521   1235777776666542   34555554311                         1122222    


Q ss_pred             HHHHHHHHhCCcEEEEeCCch-h-hhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMPCHLS-H-IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGS  214 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTA-H-~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~  214 (241)
                      +.++.|...++|.|++..... . ..++.+++ .++|+|-+                   ...+++++.+.|.+      
T Consensus        67 ~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~------  139 (293)
T 2iks_A           67 RCIEHLLQRQVDAIIVSTSLPPEHPFYQRWAN-DPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE------  139 (293)
T ss_dssp             HHHHHHHHTTCSEEEECCSSCTTCHHHHTTTT-SSSCEEEEESCCCTTTCEEEEECHHHHHHHHHHHHHTSCCS------
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHh-CCCCEEEECCccCcCCCCEEEecCHHHHHHHHHHHHHCCCC------
Confidence            233567788999888765432 2 13344432 46776543                   12344555555443      


Q ss_pred             CCEEEEEecHH---H--HhhhhHHHHHHhcCC
Q 026201          215 PLRIGVLAKNA---I--LTAGFYQEKLQHEDC  241 (241)
Q Consensus       215 ~~rVGLLaT~~---T--~~s~~Y~~~L~~~G~  241 (241)
                        ||++++.+.   +  .+..-|.+.++++|+
T Consensus       140 --~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~  169 (293)
T 2iks_A          140 --TVLYLGALPELSVSFLREQGFRTAWKDDPR  169 (293)
T ss_dssp             --SEEEEEECTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             --EEEEEecCcccccHHHHHHHHHHHHHHcCC
Confidence              899997531   1  223347788877763

>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*

Probab=92.19  E-value=2.3  Score=36.59  Aligned_cols=75  Identities=12%  Similarity=0.112  Sum_probs=46.6

Q ss_pred             HHHH-HhCCcEEEEeCCchhhh-HHHHhccCCCCeeec------------------------cHHHHHHHHHhcCCCCCC
Q 026201          159 VFLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV------------------------SECVAKELKEANMKPLEA  212 (241)
Q Consensus       159 ~~Le-~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I------------------------id~t~~~i~~~~~k~~~~  212 (241)
                      +.|. +.+++.|+-|..+.... ...+.+..++|+|..                        ....++.+.+.+.+    
T Consensus        65 ~~li~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----  140 (368)
T 4eyg_A           65 QELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIK----  140 (368)
T ss_dssp             HHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCC----
T ss_pred             HHHHhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHHHcCCC----
Confidence            3454 48999999876655432 233444557777754                        12355666665554    


Q ss_pred             CCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201          213 GSPLRIGVLAKNAIL---TAGFYQEKLQHEDC  241 (241)
Q Consensus       213 ~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~  241 (241)
                          ||+++..+...   ...-|++.+++.|+
T Consensus       141 ----~ia~i~~~~~~g~~~~~~~~~~l~~~g~  168 (368)
T 4eyg_A          141 ----KVATLTSDYAPGNDALAFFKERFTAGGG  168 (368)
T ss_dssp             ----EEEEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred             ----EEEEEecCchHhHHHHHHHHHHHHHcCC
Confidence                99999865432   24567788887764

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=92.13  E-value=0.24  Score=43.91  Aligned_cols=43  Identities=21%  Similarity=0.420  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201          152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS  195 (241)
Q Consensus       152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii  195 (241)
                      +.+.+.++.++++||+.|++.|-.. ..+.+|.+.+++|+++|.
T Consensus       161 ~~~i~rA~a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igIG  203 (264)
T 1m3u_A          161 DQLLSDALALEAAGAQLLVLECVPV-ELAKRITEALAIPVIGIG  203 (264)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESCCH-HHHHHHHHHCSSCEEEES
T ss_pred             HHHHHHHHHHHHCCCcEEEEecCCH-HHHHHHHHhCCCCEEEeC
Confidence            4455667889999999999999775 567899999999999983

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=92.11  E-value=2.2  Score=35.47  Aligned_cols=106  Identities=8%  Similarity=0.094  Sum_probs=60.6

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++=.-   .+-.||..+.+...+.   ....+++++..                         .+.+..    .
T Consensus         6 ~s~~Igvi~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-------------------------~~~~~~----~   53 (276)
T 3jy6_A            6 SSKLIAVIVAN---IDDYFSTELFKGISSILESRGYIGVLFDAN-------------------------ADIERE----K   53 (276)
T ss_dssp             CCCEEEEEESC---TTSHHHHHHHHHHHHHHHTTTCEEEEEECT-------------------------TCHHHH----H
T ss_pred             CCcEEEEEeCC---CCchHHHHHHHHHHHHHHHCCCEEEEEeCC-------------------------CCHHHH----H
Confidence            46789998532   2345777777666542   44555554411                         111221    2


Q ss_pred             HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      +.++.|...++|.|++........++.+++ .++|+|-+                   ...+++++.+.|.+        
T Consensus        54 ~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------  124 (276)
T 3jy6_A           54 TLLRAIGSRGFDGLILQSFSNPQTVQEILH-QQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQGYQ--------  124 (276)
T ss_dssp             HHHHHHHTTTCSEEEEESSCCHHHHHHHHT-TSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTTCC--------
T ss_pred             HHHHHHHhCCCCEEEEecCCcHHHHHHHHH-CCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcCCC--------
Confidence            334567788999877766554444555553 35665543                   22355666666544        


Q ss_pred             EEEEEecHH
Q 026201          217 RIGVLAKNA  225 (241)
Q Consensus       217 rVGLLaT~~  225 (241)
                      +|++++.+.
T Consensus       125 ~I~~i~~~~  133 (276)
T 3jy6_A          125 HVVVLTSEL  133 (276)
T ss_dssp             EEEEEEECS
T ss_pred             eEEEEecCC
Confidence            999997654

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=91.69  E-value=0.23  Score=44.37  Aligned_cols=42  Identities=24%  Similarity=0.367  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201          153 NLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS  195 (241)
Q Consensus       153 ~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii  195 (241)
                      .+.+.++.++++||+.|++.|-.. ..+.+|.+.+++|+++|.
T Consensus       162 ~~i~rA~a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igIG  203 (275)
T 1o66_A          162 ALLNDAKAHDDAGAAVVLMECVLA-ELAKKVTETVSCPTIGIG  203 (275)
T ss_dssp             HHHHHHHHHHHTTCSEEEEESCCH-HHHHHHHHHCSSCEEEES
T ss_pred             HHHHHHHHHHHcCCcEEEEecCCH-HHHHHHHHhCCCCEEEEC
Confidence            344566789999999999999775 567899999999999983

>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*

Probab=91.69  E-value=5.2  Score=33.40  Aligned_cols=35  Identities=11%  Similarity=0.081  Sum_probs=20.9

Q ss_pred             HHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeee
Q 026201          158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLH  193 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~  193 (241)
                      ++.|...++|.|++......   ..++++++ .++|+|-
T Consensus        52 ~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~-~~iPvV~   89 (309)
T 2fvy_A           52 IDVLLAKGVKALAINLVDPAAAGTVIEKARG-QNVPVVF   89 (309)
T ss_dssp             HHHHHHTTCSEEEECCSSGGGHHHHHHHHHT-TTCCEEE
T ss_pred             HHHHHHcCCCEEEEeCCCcchhHHHHHHHHH-CCCcEEE
Confidence            35667889998887553332   33455543 4677654

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=91.66  E-value=0.7  Score=40.51  Aligned_cols=97  Identities=12%  Similarity=0.104  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhccC-C-CCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhCCcEEE
Q 026201           93 STLNLLGKLVQLSGEE-N-DFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIV  170 (241)
Q Consensus        93 AT~~fy~kI~~~t~~d-~-~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad~Iv  170 (241)
                      ...++.++|...+.+. + .+++++.-+.+.  .+.+. .++              .+.+.+ +.+.++.++++|||+|+
T Consensus       125 ~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~--~~~g~-~~~--------------~~~~~~-ai~ra~a~~eAGAd~i~  186 (255)
T 2qiw_A          125 EAQEHADYIAAARQAADVAGVDVVINGRTDA--VKLGA-DVF--------------EDPMVE-AIKRIKLMEQAGARSVY  186 (255)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCEEEEEECH--HHHCT-TTS--------------SSHHHH-HHHHHHHHHHHTCSEEE
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCeEEEEEech--hhccC-Ccc--------------hHHHHH-HHHHHHHHHHcCCcEEE
Confidence            3457888888887764 2 466666442221  11110 000              011222 33455678999999999


Q ss_pred             EeCCchhhhHHHHhccCCCCeeecc--H------HHHHHHHHhcCC
Q 026201          171 MPCHLSHIWHDEVCKGCSVPFLHVS--E------CVAKELKEANMK  208 (241)
Q Consensus       171 IaCNTAH~~~d~l~~~~~vPil~Ii--d------~t~~~i~~~~~k  208 (241)
                      ++|-..-..+.++.+.+++|+ +++  .      .+.+++.+.|.+
T Consensus       187 ~e~~~~~~~~~~i~~~~~~P~-n~~~~~~~~~p~~~~~eL~~lGv~  231 (255)
T 2qiw_A          187 PVGLSTAEQVERLVDAVSVPV-NITAHPVDGHGAGDLATLAGLGVR  231 (255)
T ss_dssp             ECCCCSHHHHHHHHTTCSSCB-EEECBTTTBBTTBCHHHHHHTTCC
T ss_pred             EcCCCCHHHHHHHHHhCCCCE-EEEecCCCCCCCCCHHHHHHcCCC
Confidence            999754466788999999997 443  2      358899999875

>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}

Probab=91.60  E-value=0.53  Score=39.51  Aligned_cols=118  Identities=14%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      .++||++-..    +-.||..+.+...+.   ....+++++..                         .+.+...    +
T Consensus         8 ~~~Igvi~~~----~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-------------------------~~~~~~~----~   54 (288)
T 2qu7_A            8 SNIIAFIVPD----QNPFFTEVLTEISHECQKHHLHVAVASSE-------------------------ENEDKQQ----D   54 (288)
T ss_dssp             EEEEEEEESS----CCHHHHHHHHHHHHHHGGGTCEEEEEECT-------------------------TCHHHHH----H
T ss_pred             CCEEEEEECC----CCchHHHHHHHHHHHHHHCCCEEEEEeCC-------------------------CCHHHHH----H
Confidence            4689998643    446777777666532   33445554311                         1112222    2


Q ss_pred             HHHHHHHhCCcEEEEeCCchh-hhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          157 KRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH-~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      .++.|...++|.|++...... ..++.+   .++|++-+                   ...+++++.+.|.+        
T Consensus        55 ~~~~l~~~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~~G~~--------  123 (288)
T 2qu7_A           55 LIETFVSQNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELESTSLPSITVDNEEAAYIATKRVLESTCK--------  123 (288)
T ss_dssp             HHHHHHHTTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSSCCCCEEEECHHHHHHHHHHHHHTSSCC--------
T ss_pred             HHHHHHHcCccEEEEecCCCChHHHHHh---cCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCC--------
Confidence            345667889998887654322 233333   34554432                   22344555555443        


Q ss_pred             EEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          217 RIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      ||++++.+.     ..+..-|.+.++++|+
T Consensus       124 ~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~  153 (288)
T 2qu7_A          124 EVGLLLANPNISTTIGRKNGYNKAISEFDL  153 (288)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHcCC
Confidence            999997531     2233447788877764

>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}

Probab=91.55  E-value=2.1  Score=35.73  Aligned_cols=127  Identities=9%  Similarity=0.052  Sum_probs=68.5

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---C-CCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---N-DFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL  154 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~-~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l  154 (241)
                      +.++||++=-...  +-.||..+.+...+.   . ...++++....                      ...+.+...   
T Consensus         7 ~~~~Igvi~~~~~--~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~----------------------~~~~~~~~~---   59 (304)
T 3gbv_A            7 KKYTFACLLPKHL--EGEYWTDVQKGIREAVTTYSDFNISANITHY----------------------DPYDYNSFV---   59 (304)
T ss_dssp             CCEEEEEEEECCC--TTSHHHHHHHHHHHHHHHTGGGCEEEEEEEE----------------------CSSCHHHHH---
T ss_pred             CcceEEEEecCCC--CchHHHHHHHHHHHHHHHHHhCCeEEEEEcC----------------------CCCCHHHHH---
Confidence            3568997742210  335777777766643   3 45666643100                      011222222   


Q ss_pred             HHHHHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCC
Q 026201          155 RRKRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLE  211 (241)
Q Consensus       155 ~~~~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~  211 (241)
                       +.++.|...++|.|++......   ..++.+++. ++|+|-+                    ...+++++.+.|..   
T Consensus        60 -~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~-~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~---  134 (304)
T 3gbv_A           60 -ATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNEL-GIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLLAVN---  134 (304)
T ss_dssp             -HHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHH-TCCEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHHHHSTT---
T ss_pred             -HHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHC-CCeEEEEeCCCCCCCceEEEecChHHHHHHHHHHHHHHhCC---
Confidence             2345677889998877654432   234444432 4444432                    23456777777651   


Q ss_pred             CCCCCEEEEEe---------cHHHHhhhhHHHHHHhcC
Q 026201          212 AGSPLRIGVLA---------KNAILTAGFYQEKLQHED  240 (241)
Q Consensus       212 ~~~~~rVGLLa---------T~~T~~s~~Y~~~L~~~G  240 (241)
                         .++|++++         +....+..-|.+.++++|
T Consensus       135 ---~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g  169 (304)
T 3gbv_A          135 ---DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHH  169 (304)
T ss_dssp             ---CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHC
T ss_pred             ---CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhC
Confidence               24999997         223344455888888776

>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A

Probab=91.47  E-value=1.2  Score=38.49  Aligned_cols=75  Identities=8%  Similarity=0.088  Sum_probs=45.9

Q ss_pred             HHHHH-hCCcEEEEeCCchhhh-HHHHhccCCCCeeec--------------------------cHHHHHHHHHhcCCCC
Q 026201          159 VFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKPL  210 (241)
Q Consensus       159 ~~Le~-~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I--------------------------id~t~~~i~~~~~k~~  210 (241)
                      +.|.. .+++.|+.+..+.... ...+.+..++|+|..                          ...+++.+.+.|.+  
T Consensus        75 ~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--  152 (375)
T 4evq_A           75 TKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLK--  152 (375)
T ss_dssp             HCCCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCC--
T ss_pred             HHHHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCc--
Confidence            34544 4899998886654432 233344456777732                          22455666666554  


Q ss_pred             CCCCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201          211 EAGSPLRIGVLAKNAIL---TAGFYQEKLQHEDC  241 (241)
Q Consensus       211 ~~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~  241 (241)
                            ||++++.+...   ...-|++.+++.|+
T Consensus       153 ------~ia~i~~~~~~~~~~~~~~~~~l~~~G~  180 (375)
T 4evq_A          153 ------KAVTVTWKYAAGEEMVSGFKKSFTAGKG  180 (375)
T ss_dssp             ------EEEEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred             ------EEEEEecCchHHHHHHHHHHHHHHHcCC
Confidence                  99999865432   24567888888774

>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*

Probab=91.35  E-value=2  Score=37.13  Aligned_cols=76  Identities=8%  Similarity=0.094  Sum_probs=46.3

Q ss_pred             HHHHHHh-CCcEEEEeCCchhhh-HHHHhccCCCCeeecc---------------------------HHHHHHHHHhcCC
Q 026201          158 RVFLEKA-GARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS---------------------------ECVAKELKEANMK  208 (241)
Q Consensus       158 ~~~Le~~-Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Ii---------------------------d~t~~~i~~~~~k  208 (241)
                      ++.|... +++.|+.|..+.... .-.+.+..++|+|...                           ...++.+.+.|.+
T Consensus        81 ~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  160 (386)
T 3sg0_A           81 ARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAK  160 (386)
T ss_dssp             HHHHHHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhhcCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCC
Confidence            3445555 899999876654432 2344455677776532                           2455666665544


Q ss_pred             CCCCCCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201          209 PLEAGSPLRIGVLAKNAIL---TAGFYQEKLQHEDC  241 (241)
Q Consensus       209 ~~~~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~  241 (241)
                              ||+++..+...   ...-|++.+++.|+
T Consensus       161 --------~ia~i~~~~~~~~~~~~~~~~~l~~~g~  188 (386)
T 3sg0_A          161 --------KVGYIGFSDAYGEGYYKVLAAAAPKLGF  188 (386)
T ss_dssp             --------EEEEEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred             --------EEEEEecCchHHHHHHHHHHHHHHHcCC
Confidence                    99999754332   34557778877764

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=91.30  E-value=0.26  Score=44.09  Aligned_cols=43  Identities=16%  Similarity=0.226  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201          152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS  195 (241)
Q Consensus       152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii  195 (241)
                      +.+.+.++.++++||+.|++.|-.. ..+.+|.+.+++|+++|.
T Consensus       179 ~~~i~rA~a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igIG  221 (281)
T 1oy0_A          179 EQTIADAIAVAEAGAFAVVMEMVPA-ELATQITGKLTIPTVGIG  221 (281)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESCCH-HHHHHHHHHCSSCEEEES
T ss_pred             HHHHHHHHHHHHcCCcEEEEecCCH-HHHHHHHHhCCCCEEEeC
Confidence            4455667889999999999999775 567899999999999983

>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}

Probab=91.30  E-value=2.2  Score=37.23  Aligned_cols=122  Identities=14%  Similarity=0.156  Sum_probs=64.6

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++---   .+-.||..+.+...+.   ....+++++..                         .+.+...    
T Consensus        65 ~s~~Igvi~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~~~----  112 (348)
T 3bil_A           65 RSNTIGVIVPS---LINHYFAAMVTEIQSTASKAGLATIITNSN-------------------------EDATTMS----  112 (348)
T ss_dssp             ---CEEEEESC---SSSHHHHHHHHHHHHHHHHTTCCEEEEECT-------------------------TCHHHHH----
T ss_pred             CCCEEEEEeCC---CCCcHHHHHHHHHHHHHHHcCCEEEEEeCC-------------------------CCHHHHH----
Confidence            35689998521   1235777776666542   34555554411                         1111112    


Q ss_pred             HHHHHHHHhCCcEEEEeCCch-hhhHHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGS  214 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTA-H~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~~~  214 (241)
                      +.++.|...++|.|++..... ...++.+++ .++|+|-+                    ...+++++.+.|.+      
T Consensus       113 ~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~------  185 (348)
T 3bil_A          113 GSLEFLTSHGVDGIICVPNEECANQLEDLQK-QGMPVVLVDRELPGDSTIPTATSNPQPGIAAAVELLAHNNAL------  185 (348)
T ss_dssp             HHHHHHHHTTCSCEEECCCGGGHHHHHHHHH-C-CCEEEESSCCSCC-CCCEEEEECHHHHHHHHHHHHHTTCC------
T ss_pred             HHHHHHHhCCCCEEEEeCCCCChHHHHHHHh-CCCCEEEEcccCCCCCCCCEEEeChHHHHHHHHHHHHHCCCC------
Confidence            233566778999777755432 234455543 34554432                    23456667776654      


Q ss_pred             CCEEEEEecHH---H--HhhhhHHHHHHhcCC
Q 026201          215 PLRIGVLAKNA---I--LTAGFYQEKLQHEDC  241 (241)
Q Consensus       215 ~~rVGLLaT~~---T--~~s~~Y~~~L~~~G~  241 (241)
                        ||++++.+.   +  .+..-|.+.++++|+
T Consensus       186 --~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~  215 (348)
T 3bil_A          186 --PIGYLSGPMDTSTGRERLEDFKAACANSKI  215 (348)
T ss_dssp             --SEEEECCCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             --eEEEEeCCCCCccHHHHHHHHHHHHHHcCc
Confidence              999997542   1  223347788887764

>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}

Probab=91.24  E-value=2.4  Score=37.26  Aligned_cols=74  Identities=5%  Similarity=-0.009  Sum_probs=43.3

Q ss_pred             HHHH-HhCCcEEEEeCCchhh-hHHHHhccCCCCeeec----------------------cHHHHHHHHHh-cCCCCCCC
Q 026201          159 VFLE-KAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV----------------------SECVAKELKEA-NMKPLEAG  213 (241)
Q Consensus       159 ~~Le-~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~I----------------------id~t~~~i~~~-~~k~~~~~  213 (241)
                      +.|. +.+++.|+.+| +... ..-.+.+..++|+|..                      ....++.+.+. +.+     
T Consensus        69 ~~li~~~~V~~iiG~~-s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~-----  142 (391)
T 3eaf_A           69 REFRDRYGVIAIIGWG-TADTEKLSDQVDTDKITYISASYSAKLLVKPFNFYPAPDYSTQACSGLAFLASEFGQG-----  142 (391)
T ss_dssp             HHHHHTTCCSEEEECC-HHHHHHHHHHHHHHTCEEEESCCCGGGTTSTTEECSSCCHHHHHHHHHHHHHHHHCSE-----
T ss_pred             HHHHhhcCcEEEEEcC-cHHHHHHHHHHhhcCCeEEecccchhhcCCCcEEEeCCCHHHHHHHHHHHHHHhcCCC-----
Confidence            4455 78999998854 3332 2233334457777642                      22345566664 655     


Q ss_pred             CCCEEEEEec-HHHH---hhhhHHHHHHhcCC
Q 026201          214 SPLRIGVLAK-NAIL---TAGFYQEKLQHEDC  241 (241)
Q Consensus       214 ~~~rVGLLaT-~~T~---~s~~Y~~~L~~~G~  241 (241)
                         ||+++.. +...   ....|++.+++.|+
T Consensus       143 ---~iaii~~~~~~~g~~~~~~~~~~l~~~G~  171 (391)
T 3eaf_A          143 ---KLALAYDSKVAYSRSPIGAIKKAAPSLGL  171 (391)
T ss_dssp             ---EEEEEECTTCHHHHTTHHHHHHHTGGGTE
T ss_pred             ---EEEEEEecCChhHHHHHHHHHHHHHHcCC
Confidence               9999987 3222   24457777777763

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=91.20  E-value=5.7  Score=32.92  Aligned_cols=119  Identities=13%  Similarity=0.058  Sum_probs=66.1

Q ss_pred             cCCeEEEEeC-CChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHH
Q 026201           79 QANTVGIVGG-ASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL  154 (241)
Q Consensus        79 ~~k~IGIIGG-mGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l  154 (241)
                      +.++||++-- ++    -.|+..+.+...+.   ....+++++..                         .+.+...   
T Consensus         4 ~~~~Ig~i~~~~~----~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~~~---   51 (291)
T 3l49_A            4 EGKTIGITAIGTD----HDWDLKAYQAQIAEIERLGGTAIALDAG-------------------------RNDQTQV---   51 (291)
T ss_dssp             TTCEEEEEESCCS----SHHHHHHHHHHHHHHHHTTCEEEEEECT-------------------------TCHHHHH---
T ss_pred             CCcEEEEEeCCCC----ChHHHHHHHHHHHHHHHcCCEEEEEcCC-------------------------CCHHHHH---
Confidence            3578999863 33    35666666655532   45566665411                         1222222   


Q ss_pred             HHHHHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeec------------------cHHHHHHHHH--hcCCCCC
Q 026201          155 RRKRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV------------------SECVAKELKE--ANMKPLE  211 (241)
Q Consensus       155 ~~~~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~I------------------id~t~~~i~~--~~~k~~~  211 (241)
                       +.++.|...++|.|++......   ..++.+.+ .++|++-+                  ...+++++.+  .|.+   
T Consensus        52 -~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~---  126 (291)
T 3l49_A           52 -SQIQTLIAQKPDAIIEQLGNLDVLNPWLQKIND-AGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKG---  126 (291)
T ss_dssp             -HHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHH-TTCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTCE---
T ss_pred             -HHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH-CCCcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCCc---
Confidence             2345677889998887554322   23444443 35666543                  3345667777  5544   


Q ss_pred             CCCCCEEEEEecHH-----HHhhhhHHHHHHhc
Q 026201          212 AGSPLRIGVLAKNA-----ILTAGFYQEKLQHE  239 (241)
Q Consensus       212 ~~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~  239 (241)
                           ||++++...     ..+..-|++.++++
T Consensus       127 -----~i~~i~~~~~~~~~~~R~~gf~~~l~~~  154 (291)
T 3l49_A          127 -----NVLVFNGFYSVPVCKIRYDQMKYVLEAF  154 (291)
T ss_dssp             -----EEEEECSCTTSHHHHHHHHHHHHHHHTC
T ss_pred             -----eEEEEeCCCCCchHHHHHHHHHHHHHHC
Confidence                 999997421     11233477888776

>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}

Probab=91.18  E-value=2.7  Score=36.80  Aligned_cols=75  Identities=1%  Similarity=-0.079  Sum_probs=43.5

Q ss_pred             HHHHHHh-CCcEEEEeCCchhh-hHHHHhccCCCCeeec-------------------------cHHHHHHHHHh-cCCC
Q 026201          158 RVFLEKA-GARCIVMPCHLSHI-WHDEVCKGCSVPFLHV-------------------------SECVAKELKEA-NMKP  209 (241)
Q Consensus       158 ~~~Le~~-Gad~IvIaCNTAH~-~~d~l~~~~~vPil~I-------------------------id~t~~~i~~~-~~k~  209 (241)
                      ++.|... +++.|+.+ .+... ..-.+.+..++|+|..                         ....++.+.+. +.+ 
T Consensus        67 ~~~li~~~~V~~iig~-~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~-  144 (392)
T 3lkb_A           67 FEEAVDRFKIPVFLSY-ATGANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGA-  144 (392)
T ss_dssp             HHHHHHTTCCSCEEEC-CHHHHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHhhcCcEEEEeC-CcHHHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCC-
Confidence            3456555 99988884 33322 2233334456776652                         12345566664 544 


Q ss_pred             CCCCCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201          210 LEAGSPLRIGVLAKNAIL---TAGFYQEKLQHEDC  241 (241)
Q Consensus       210 ~~~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~  241 (241)
                             ||+++..+...   ...-|++.+++.|+
T Consensus       145 -------~iaii~~~~~~g~~~~~~~~~~l~~~G~  172 (392)
T 3lkb_A          145 -------KVALVVHPSPFGRAPVEDARKAARELGL  172 (392)
T ss_dssp             -------EEEEEECSSHHHHTTHHHHHHHHHHHTC
T ss_pred             -------EEEEEEeCCchhhhHHHHHHHHHHHcCC
Confidence                   99999876443   23457788877764

>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}

Probab=91.16  E-value=3.3  Score=35.78  Aligned_cols=75  Identities=13%  Similarity=0.154  Sum_probs=45.1

Q ss_pred             HHHHH-hCCcEEEEeCCchhhh-HHH--HhccCCCCeeecc-----------------------HHHHHHHHHhcCCCCC
Q 026201          159 VFLEK-AGARCIVMPCHLSHIW-HDE--VCKGCSVPFLHVS-----------------------ECVAKELKEANMKPLE  211 (241)
Q Consensus       159 ~~Le~-~Gad~IvIaCNTAH~~-~d~--l~~~~~vPil~Ii-----------------------d~t~~~i~~~~~k~~~  211 (241)
                      +.|.. .+++.|+.|..+.... .-.  +.+..++|+|...                       ..+++.+.+.|.|   
T Consensus        66 ~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~---  142 (364)
T 3lop_A           66 RDMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTTDPLVFPIKASYQQEIDKMITALVTIGVT---  142 (364)
T ss_dssp             HHHHHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGSCTTEECCSCCHHHHHHHHHHHHHHTTCC---
T ss_pred             HHHHhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhccCCcEEEeCCChHHHHHHHHHHHHHcCCc---
Confidence            44555 4999998876654432 223  3344566666531                       2455666655554   


Q ss_pred             CCCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201          212 AGSPLRIGVLAKNAIL---TAGFYQEKLQHEDC  241 (241)
Q Consensus       212 ~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~  241 (241)
                           ||++++.+...   ...-|++.+++.|+
T Consensus       143 -----~iaii~~~~~~g~~~~~~~~~~~~~~G~  170 (364)
T 3lop_A          143 -----RIGVLYQEDALGKEAITGVERTLKAHAL  170 (364)
T ss_dssp             -----CEEEEEETTHHHHHHHHHHHHHHHTTTC
T ss_pred             -----eEEEEEeCchhhHHHHHHHHHHHHHcCC
Confidence                 99999864432   34557888887764

>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C

Probab=90.92  E-value=1.6  Score=36.50  Aligned_cols=126  Identities=12%  Similarity=0.008  Sum_probs=67.9

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      .++||++=--   .+-.||..+.+...+.   ....++++....                       ..+.+...    +
T Consensus         5 ~~~Igvi~~~---~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~-----------------------~~~~~~~~----~   54 (304)
T 3o1i_D            5 DEKICAIYPH---LKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG-----------------------YPNKSRQE----Q   54 (304)
T ss_dssp             CCEEEEEESC---SCSHHHHHHHHHHHHHHHHHTCEEEEEECSS-----------------------TTCHHHHH----H
T ss_pred             CcEEEEEeCC---CCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC-----------------------CCCHHHHH----H
Confidence            5789988521   1235777777666542   345566544110                       01222222    2


Q ss_pred             HHHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeecc-------------------------HHHHHHHHHhcCC
Q 026201          157 KRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHVS-------------------------ECVAKELKEANMK  208 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~Ii-------------------------d~t~~~i~~~~~k  208 (241)
                      .++.|...++|.|++......   ..++++.  .++|+|-+-                         ..+++++.+.+.+
T Consensus        55 ~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~--~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~  132 (304)
T 3o1i_D           55 QLALCTQWGANAIILGTVDPHAYEHNLKSWV--GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPK  132 (304)
T ss_dssp             HHHHHHHHTCSEEEECCSSTTSSTTTHHHHT--TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBT
T ss_pred             HHHHHHHcCCCEEEEeCCChhHHHHHHHHHc--CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhccc
Confidence            345677789998887655444   3456665  578877661                         1245566665511


Q ss_pred             CCCCCCCCEEEEEecHHH-----HhhhhHHHHHHhcC
Q 026201          209 PLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHED  240 (241)
Q Consensus       209 ~~~~~~~~rVGLLaT~~T-----~~s~~Y~~~L~~~G  240 (241)
                         .+..++|++++.+..     .+..-|++.+++.|
T Consensus       133 ---~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~  166 (304)
T 3o1i_D          133 ---GSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSD  166 (304)
T ss_dssp             ---TTCCEEEEEECCCC-----CHHHHHHHHTTTTBT
T ss_pred             ---CCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCC
Confidence               111348999964321     12233666666555

>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}

Probab=90.84  E-value=1  Score=39.06  Aligned_cols=76  Identities=11%  Similarity=0.113  Sum_probs=46.2

Q ss_pred             HHHHHHHhCCcEEEEeCCch-hhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          157 KRVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTA-H~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      .++.|...++|.|++..... ....+.+++ .++|++-+                   ...+++++.+.|.+        
T Consensus       116 ~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------  186 (344)
T 3kjx_A          116 VLYEMLSWRPSGVIIAGLEHSEAARAMLDA-AGIPVVEIMDSDGKPVDAMVGISHRRAGREMAQAILKAGYR--------  186 (344)
T ss_dssp             HHHHHHTTCCSEEEEECSCCCHHHHHHHHH-CSSCEEEEEECSSCCSSEEEEECHHHHHHHHHHHHHHHTCC--------
T ss_pred             HHHHHHhCCCCEEEEECCCCCHHHHHHHHh-CCCCEEEEeCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------
Confidence            34567788999888765432 233444443 35666544                   22456677777765        


Q ss_pred             EEEEEecHH----HH--hhhhHHHHHHhcCC
Q 026201          217 RIGVLAKNA----IL--TAGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~~----T~--~s~~Y~~~L~~~G~  241 (241)
                      |||+++.+.    +.  +..-|.+.++++|+
T Consensus       187 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~  217 (344)
T 3kjx_A          187 RIGFMGTKMPLDYRARKRFEGFTEVLGKNGV  217 (344)
T ss_dssp             SCCEEESSTTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEecCcccCccHHHHHHHHHHHHHHcCC
Confidence            899998642    22  23347888887764

>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}

Probab=90.53  E-value=3.4  Score=35.40  Aligned_cols=118  Identities=11%  Similarity=0.081  Sum_probs=63.7

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---C-CCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---N-DFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~-~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      .++||++=..    +-.||..+.+...+.   . ...++++...                         .+.+...    
T Consensus         6 ~~~Igvi~~~----~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~-------------------------~~~~~~~----   52 (325)
T 2x7x_A            6 HFRIGVAQCS----DDSWRHKMNDEILREAMFYNGVSVEIRSAG-------------------------DDNSKQA----   52 (325)
T ss_dssp             CCEEEEEESC----CSHHHHHHHHHHHHHHTTSSSCEEEEEECT-------------------------TCHHHHH----
T ss_pred             CeEEEEEecC----CCHHHHHHHHHHHHHHHHcCCcEEEEeCCC-------------------------CCHHHHH----
Confidence            5689998543    346777776665532   3 4566664411                         1112222    


Q ss_pred             HHHHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeec--------------------cHHHHHHHHHh--cCCCC
Q 026201          156 RKRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELKEA--NMKPL  210 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~--~~k~~  210 (241)
                      +.++.|...++|.|++......   ..++.+.+ .++|+|-+                    ...+++++.+.  |.+  
T Consensus        53 ~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~--  129 (325)
T 2x7x_A           53 EDVHYFMDEGVDLLIISANEAAPMTPIVEEAYQ-KGIPVILVDRKILSDKYTAYIGADNYEIGRSVGNYIASSLKGKG--  129 (325)
T ss_dssp             HHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH-TTCCEEEESSCCSSSCSSEEEEECHHHHHHHHHHHHHHHTTTEE--
T ss_pred             HHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH-CCCeEEEeCCCCCCcceeEEEecCHHHHHHHHHHHHHHHcCCCc--
Confidence            2334566789998887644332   23444432 34555432                    22345566664  544  


Q ss_pred             CCCCCCEEEEEecHH-----HHhhhhHHHHHHhc
Q 026201          211 EAGSPLRIGVLAKNA-----ILTAGFYQEKLQHE  239 (241)
Q Consensus       211 ~~~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~  239 (241)
                            ||++++.+.     ..+..-|.+.++++
T Consensus       130 ------~I~~i~~~~~~~~~~~R~~Gf~~al~~~  157 (325)
T 2x7x_A          130 ------NIVELTGLSGSTPAMERHQGFMAAISKF  157 (325)
T ss_dssp             ------EEEEEESCTTSHHHHHHHHHHHHHHHTC
T ss_pred             ------eEEEEECCCCCccHHHHHHHHHHHHHhC
Confidence                  999997532     12234477777766

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=90.10  E-value=5.4  Score=33.51  Aligned_cols=125  Identities=14%  Similarity=-0.009  Sum_probs=67.4

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      ..+||++----   +-.||..+.+...+.   ....++++...                       ...+.+...    +
T Consensus         3 ~~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----------------------~~~~~~~~~----~   52 (297)
T 3rot_A            3 RDKYYLITHGS---QDPYWTSLFQGAKKAAEELKVDLQILAPP-----------------------GANDVPKQV----Q   52 (297)
T ss_dssp             CCEEEEECSCC---CSHHHHHHHHHHHHHHHHHTCEEEEECCS-----------------------SSCCHHHHH----H
T ss_pred             eEEEEEEecCC---CCchHHHHHHHHHHHHHHhCcEEEEECCC-----------------------CcCCHHHHH----H
Confidence            35899985322   345777776666542   34555554411                       001222222    2


Q ss_pred             HHHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeec-----------------------cHHHHHHHHHhcCCCC
Q 026201          157 KRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV-----------------------SECVAKELKEANMKPL  210 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~I-----------------------id~t~~~i~~~~~k~~  210 (241)
                      .++.|...++|.|++......   ..++++++ .++|++-+                       ...+++++.+.+.   
T Consensus        53 ~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~-~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~---  128 (297)
T 3rot_A           53 FIESALATYPSGIATTIPSDTAFSKSLQRANK-LNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTP---  128 (297)
T ss_dssp             HHHHHHHTCCSEEEECCCCSSTTHHHHHHHHH-HTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHCT---
T ss_pred             HHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH-CCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhcC---
Confidence            345677889998887544333   23444433 24444432                       2356677777761   


Q ss_pred             CCCCCCEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          211 EAGSPLRIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       211 ~~~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                         ..++|++++...     ..+..-|++.++++|+
T Consensus       129 ---~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~  161 (297)
T 3rot_A          129 ---SAKRALVLNPQPGHIGLEKRAYGIKTILQDKGI  161 (297)
T ss_dssp             ---TCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             ---CCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCC
Confidence               134999995431     2334557888877764

>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}

Probab=89.97  E-value=4.3  Score=34.82  Aligned_cols=74  Identities=12%  Similarity=-0.050  Sum_probs=41.3

Q ss_pred             HHHHHHhC--CcEEEEeCCchhh---hHHHHhccCCCCeeec---------------------------cHHHHHHHHH-
Q 026201          158 RVFLEKAG--ARCIVMPCHLSHI---WHDEVCKGCSVPFLHV---------------------------SECVAKELKE-  204 (241)
Q Consensus       158 ~~~Le~~G--ad~IvIaCNTAH~---~~d~l~~~~~vPil~I---------------------------id~t~~~i~~-  204 (241)
                      ++.|...+  +|.|++.......   .++.+.+ .++|++-+                           ...+++++.+ 
T Consensus        54 i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~  132 (332)
T 2rjo_A           54 IRALLQKTGGNLVLNVDPNDSADARVIVEACSK-AGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKS  132 (332)
T ss_dssp             HHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHH-HTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCEEEEeCCCHHHHHHHHHHHHH-CCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHH
Confidence            34566678  9988876544332   3344432 24454422                           2335566666 


Q ss_pred             -hcCCCCCCCCCCEEEEEecHH-----HHhhhhHHHHHHhc-C
Q 026201          205 -ANMKPLEAGSPLRIGVLAKNA-----ILTAGFYQEKLQHE-D  240 (241)
Q Consensus       205 -~~~k~~~~~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~-G  240 (241)
                       .|.+        ||++++.+.     ..+..-|.+.++++ |
T Consensus       133 ~~G~~--------~I~~i~g~~~~~~~~~R~~Gf~~al~~~pg  167 (332)
T 2rjo_A          133 MGGKG--------GVVALGGIFSNVPAIERKAGLDAALKKFPG  167 (332)
T ss_dssp             TTTCE--------EEEEEECCTTCHHHHHHHHHHHHHHHTCTT
T ss_pred             cCCCC--------eEEEEECCCCCccHHHHHHHHHHHHHhCCC
Confidence             4544        999997541     12333477888776 5

>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}

Probab=89.93  E-value=5.4  Score=33.05  Aligned_cols=75  Identities=11%  Similarity=0.029  Sum_probs=42.1

Q ss_pred             HHHHHHhCCcEEEEeCCchhhhHHHHhc--cCCCCeeec--------------------cHHHHHHHHHh-c-CCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLSHIWHDEVCK--GCSVPFLHV--------------------SECVAKELKEA-N-MKPLEAG  213 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~--~~~vPil~I--------------------id~t~~~i~~~-~-~k~~~~~  213 (241)
                      ++.|.+.++|.|++.......+.+.++.  ..++|++-+                    ...+++++.+. | .+     
T Consensus        58 ~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~-----  132 (289)
T 3brs_A           58 IEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQDIADITVATDNIQAGIRIGAVTKNLVRKSG-----  132 (289)
T ss_dssp             HHHHHHTCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSCCSSCCCSEEEECCHHHHHHHHHHHHHHHTSSSC-----
T ss_pred             HHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEECCCCCCCcceEEEeeChHHHHHHHHHHHHHHcCCCc-----
Confidence            3567778999888865544332222322  134555432                    23455666665 4 44     


Q ss_pred             CCCEEEEEecHH-----HHhhhhHHHHHHhcC
Q 026201          214 SPLRIGVLAKNA-----ILTAGFYQEKLQHED  240 (241)
Q Consensus       214 ~~~rVGLLaT~~-----T~~s~~Y~~~L~~~G  240 (241)
                         ||++++.+.     ..+..-|++.++++|
T Consensus       133 ---~i~~i~~~~~~~~~~~R~~gf~~~l~~~g  161 (289)
T 3brs_A          133 ---KIGVISFVKNSKTAMDREEGLKIGLSDDS  161 (289)
T ss_dssp             ---EEEEEESCTTSHHHHHHHHHHHHHHGGGG
T ss_pred             ---eEEEEECCCCCccHHHHHHHHHHHHHhCC
Confidence               999997531     123344777777665

>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}

Probab=89.89  E-value=6.2  Score=34.32  Aligned_cols=75  Identities=9%  Similarity=-0.014  Sum_probs=45.2

Q ss_pred             HHHH-HhCCcEEEEeCCchhhh-HHHHhccCCCCeeec--------------------------cHHHHHHHHHhcCCCC
Q 026201          159 VFLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKPL  210 (241)
Q Consensus       159 ~~Le-~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I--------------------------id~t~~~i~~~~~k~~  210 (241)
                      +.|. +.|++.|+-|..+.... .-.+.+..++|+|..                          ...+++.+.+.+.+  
T Consensus        66 ~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~--  143 (379)
T 3n0w_A           66 REWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYK--  143 (379)
T ss_dssp             HHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCC--
T ss_pred             HHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCc--
Confidence            3444 48999998877655443 233334445666553                          23445566665544  


Q ss_pred             CCCCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201          211 EAGSPLRIGVLAKNAIL---TAGFYQEKLQHEDC  241 (241)
Q Consensus       211 ~~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~  241 (241)
                            ||+++..+...   ....|++.+++.|+
T Consensus       144 ------~vaii~~~~~~g~~~~~~~~~~~~~~G~  171 (379)
T 3n0w_A          144 ------TWFLMLPDAAYGDLMNAAIRRELTAGGG  171 (379)
T ss_dssp             ------EEEEEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred             ------EEEEEecccchhHHHHHHHHHHHHHcCC
Confidence                  99999865432   24557777877763

>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}

Probab=89.77  E-value=5.3  Score=34.60  Aligned_cols=75  Identities=7%  Similarity=0.019  Sum_probs=46.1

Q ss_pred             HHHH-HhCCcEEEEeCCchhhh-HHHHhccCCCCeeec--------------------------cHHHHHHHHHhcCCCC
Q 026201          159 VFLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKPL  210 (241)
Q Consensus       159 ~~Le-~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I--------------------------id~t~~~i~~~~~k~~  210 (241)
                      +.|. +.|++.|+-|..+.... .-.+.+..++|+|..                          ...+++.+.+.+.+  
T Consensus        64 ~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~--  141 (375)
T 3i09_A           64 REWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGK--  141 (375)
T ss_dssp             HHHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCC--
T ss_pred             HHHHhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCc--
Confidence            3444 48999999887665543 233444456666653                          12345556665544  


Q ss_pred             CCCCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201          211 EAGSPLRIGVLAKNAIL---TAGFYQEKLQHEDC  241 (241)
Q Consensus       211 ~~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~  241 (241)
                            ||+++..+...   ....|++.+++.|+
T Consensus       142 ------~vaii~~~~~~g~~~~~~~~~~~~~~G~  169 (375)
T 3i09_A          142 ------TWFFLTADYAFGKALEKNTADVVKANGG  169 (375)
T ss_dssp             ------EEEEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred             ------eEEEEecccHHHHHHHHHHHHHHHHcCC
Confidence                  99999865543   34557788887764

>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}

Probab=89.68  E-value=5.3  Score=33.69  Aligned_cols=77  Identities=12%  Similarity=0.138  Sum_probs=42.8

Q ss_pred             HHHHHHhCCcEEEEeCCch---hhhHHHHhccCCCCeeec-----------------------cHHHHHHHHHhcCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLS---HIWHDEVCKGCSVPFLHV-----------------------SECVAKELKEANMKPLE  211 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTA---H~~~d~l~~~~~vPil~I-----------------------id~t~~~i~~~~~k~~~  211 (241)
                      ++.|...++|.|++.....   ...++.+++ .++|+|-+                       ...+++++.+.|.    
T Consensus        51 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~----  125 (306)
T 2vk2_A           51 VRSFVAQGVDAIFIAPVVATGWEPVLKEAKD-AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN----  125 (306)
T ss_dssp             HHHHHHHTCSEEEECCSSSSSCHHHHHHHHH-TTCCEEEESSCCCCSCGGGSSEEEECCHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHcCCCEEEEeCCChhhHHHHHHHHHH-CCCCEEEecCCCCCCCccceEEEEecCHHHHHHHHHHHHHHhcC----
Confidence            3566778999888755432   234455543 34554432                       1245566777651    


Q ss_pred             CCCCCEEEEEecHH---H--HhhhhHHHHHHhcC
Q 026201          212 AGSPLRIGVLAKNA---I--LTAGFYQEKLQHED  240 (241)
Q Consensus       212 ~~~~~rVGLLaT~~---T--~~s~~Y~~~L~~~G  240 (241)
                       ++.+||++++.+.   +  .+..-|++.++++|
T Consensus       126 -g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g  158 (306)
T 2vk2_A          126 -GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAP  158 (306)
T ss_dssp             -TSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCT
T ss_pred             -CCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCC
Confidence             0123999997542   1  22334777777665

>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...

Probab=88.73  E-value=5.6  Score=34.52  Aligned_cols=75  Identities=15%  Similarity=0.072  Sum_probs=42.6

Q ss_pred             HHHHHHhCCcEEEEe-CCchhh-hHHHHhccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMP-CHLSHI-WHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIa-CNTAH~-~~d~l~~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++. +..... ....+. ..++|++-+                  ...+++++.+.|.+        |
T Consensus       111 l~~l~~~~vdGiIi~~~~~~~~~~~~~~~-~~~iPvV~i~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~  181 (349)
T 1jye_A          111 VHNLLAQRVSGLIINYPLDDQDAIAVEAA-CTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQ--------Q  181 (349)
T ss_dssp             HHHHHTTTCSCEEEESCCCHHHHHHHHHH-TTTSCEEESSSCTTSSSCEEEECHHHHHHHHHHHHHHHTCC--------S
T ss_pred             HHHHHHCCCCEEEEecCCCChhHHHHHHh-hCCCCEEEEcccCCCCCCEEEEchHHHHHHHHHHHHHCCCC--------E
Confidence            345677899988875 332222 222222 245666543                  12345667777655        9


Q ss_pred             EEEEecHH---H--HhhhhHHHHHHhcCC
Q 026201          218 IGVLAKNA---I--LTAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~---T--~~s~~Y~~~L~~~G~  241 (241)
                      ||+++.+.   +  .+..-|.+.++++|+
T Consensus       182 I~~i~g~~~~~~~~~R~~Gf~~al~~~gi  210 (349)
T 1jye_A          182 IALLAGPLSSVSARLRLAGWHKYLTRNQI  210 (349)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeCCCCCccHHHHHHHHHHHHHHcCC
Confidence            99997542   1  122347888887764

>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}

Probab=87.69  E-value=5  Score=33.45  Aligned_cols=74  Identities=14%  Similarity=0.052  Sum_probs=40.7

Q ss_pred             HHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeec--------------------cHHHHHHHHHh-c-CCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELKEA-N-MKPLEA  212 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~-~-~k~~~~  212 (241)
                      ++.|...++|.|++......   ..++.+++ .++|++-+                    ...+++++.+. | .+    
T Consensus        50 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~gg~~----  124 (283)
T 2ioy_A           50 VEDLIQQKVDVLLINPVDSDAVVTAIKEANS-KNIPVITIDRSANGGDVVCHIASDNVKGGEMAAEFIAKALKGKG----  124 (283)
T ss_dssp             HHHHHHTTCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCSSSCCSEEEEECHHHHHHHHHHHHHHHTTTCE----
T ss_pred             HHHHHHcCCCEEEEeCCchhhhHHHHHHHHH-CCCeEEEecCCCCCcceeEEEecChHHHHHHHHHHHHHHcCCCc----
Confidence            34566889998887443322   23344432 34554422                    22345666665 3 43    


Q ss_pred             CCCCEEEEEecHH-----HHhhhhHHHHHHhc-C
Q 026201          213 GSPLRIGVLAKNA-----ILTAGFYQEKLQHE-D  240 (241)
Q Consensus       213 ~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~-G  240 (241)
                          ||++++.+.     ..+..-|++.|+++ |
T Consensus       125 ----~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~  154 (283)
T 2ioy_A          125 ----NVVELEGIPGASAARDRGKGFDEAIAKYPD  154 (283)
T ss_dssp             ----EEEEEECCTTCHHHHHHHHHHHHHHTTCTT
T ss_pred             ----eEEEEECCCCCccHHHHHHHHHHHHHhCCC
Confidence                999997431     12233477888776 5

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=87.63  E-value=1.3  Score=39.94  Aligned_cols=105  Identities=16%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK  157 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~  157 (241)
                      .|+-|-++|---....++.+||.....+.  ..++++|.-..+.   +..                 ..   +-+.+. -
T Consensus       120 ~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa---~~~-----------------~g---ldeAi~-R  175 (302)
T 3fa4_A          120 TKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDS---LQT-----------------HG---YEESVA-R  175 (302)
T ss_dssp             C-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECC---HHH-----------------HC---HHHHHH-H
T ss_pred             CcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecc---ccc-----------------CC---HHHHHH-H
Confidence            57778887776777889999998888754  2466666542221   000                 01   222233 2


Q ss_pred             HHHHHHhCCcEEEEeCCchhhhHHHHhccC-CCCe-eeccHH------HHHHHHHhcCC
Q 026201          158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGC-SVPF-LHVSEC------VAKELKEANMK  208 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~-~vPi-l~Iid~------t~~~i~~~~~k  208 (241)
                      ++...++|||+|-+++-+.-.-+.++.+.+ ++|+ ++|++.      +.+++.+.|.+
T Consensus       176 a~ay~eAGAD~ifi~g~~~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~~~eL~~lGv~  234 (302)
T 3fa4_A          176 LRAARDAGADVGFLEGITSREMARQVIQDLAGWPLLLNMVEHGATPSISAAEAKEMGFR  234 (302)
T ss_dssp             HHHHHTTTCSEEEETTCCCHHHHHHHHHHTTTSCEEEECCTTSSSCCCCHHHHHHHTCS
T ss_pred             HHHHHHcCCCEEeecCCCCHHHHHHHHHHhcCCceeEEEecCCCCCCCCHHHHHHcCCC
Confidence            345578999999999976555567777777 4786 576642      57899999875

>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}

Probab=87.47  E-value=0.65  Score=39.62  Aligned_cols=55  Identities=20%  Similarity=0.231  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       149 ~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      ...+.+.+.++.|.+.|+|.||+.|-=.-...+++.  .++|+++-.+.+++++.+.
T Consensus       174 ~~~~~~~~~~~~l~~~g~d~vILGCTe~pll~~~~~--~~v~viDs~~~~A~~~v~~  228 (231)
T 3ojc_A          174 TSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQD--ASVPVFDTTAIHASAAADY  228 (231)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCEEECSGGGGGTCCGGG--CSSCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCHHHhccccc--CCCcEEchHHHHHHHHHHH
Confidence            345566777788888999999999974444446554  6799999999888887764

>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}

Probab=87.41  E-value=9.5  Score=33.20  Aligned_cols=73  Identities=15%  Similarity=0.074  Sum_probs=43.4

Q ss_pred             HHHHH-hCCcEEEEeCCchhhh-HHHHhccCCCCeeecc--------------------------HHHHHHHHHhcCCCC
Q 026201          159 VFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS--------------------------ECVAKELKEANMKPL  210 (241)
Q Consensus       159 ~~Le~-~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Ii--------------------------d~t~~~i~~~~~k~~  210 (241)
                      +.|.. .|++.|+-|..+.... .-.+.+..++|+|...                          ...++.+.+.+    
T Consensus        66 ~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g----  141 (387)
T 3i45_A           66 QELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLP----  141 (387)
T ss_dssp             HHHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSS----
T ss_pred             HHHHHhcCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcC----
Confidence            34544 6999999987765543 3444455678877631                          12333333333    


Q ss_pred             CCCCCCEEEEEecHHHH---hhhhHHHHHHhc
Q 026201          211 EAGSPLRIGVLAKNAIL---TAGFYQEKLQHE  239 (241)
Q Consensus       211 ~~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~  239 (241)
                          .+||+++..+...   ....|++.+++.
T Consensus       142 ----~~~vaii~~~~~~g~~~~~~~~~~l~~~  169 (387)
T 3i45_A          142 ----ITRWATIAPNYEYGQSAVARFKELLLAA  169 (387)
T ss_dssp             ----CCEEEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred             ----CCeEEEEeCCchHhHHHHHHHHHHHHHh
Confidence                3599999865432   234577777766

>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*

Probab=87.36  E-value=4  Score=33.79  Aligned_cols=77  Identities=9%  Similarity=0.040  Sum_probs=42.0

Q ss_pred             HHHHHHhCCcEEEEeCCchhh---hHHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGS  214 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~---~~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~~~  214 (241)
                      ++.|...++|.|++.......   ..+++++ .++|++-+                    ...+++++.+.+.      +
T Consensus        50 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~i~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~------g  122 (271)
T 2dri_A           50 VQDLTVRGTKILLINPTDSDAVGNAVKMANQ-ANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG------E  122 (271)
T ss_dssp             HHHHTTTTEEEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCSSSCCSEEEEECHHHHHHHHHHHHHHHHC------T
T ss_pred             HHHHHHcCCCEEEEeCCChHHHHHHHHHHHH-CCCcEEEecCCCCCCceeEEEecChHHHHHHHHHHHHHHcC------C
Confidence            345667889988775433222   2344433 34555432                    1234566766642      1


Q ss_pred             CCEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          215 PLRIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       215 ~~rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      .+||++++.+.     ..+..-|++.+++.|+
T Consensus       123 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~  154 (271)
T 2dri_A          123 GAKVIELQGIAGTSAARERGEGFQQAVAAHKF  154 (271)
T ss_dssp             TCEEEEEECCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCccHhHHHHHHHHHHhcCCC
Confidence            24999997431     2233447888877664

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=87.13  E-value=0.77  Score=40.71  Aligned_cols=99  Identities=19%  Similarity=0.211  Sum_probs=61.4

Q ss_pred             ChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCC-H-HHHHHHHHHHHHHHHHhC
Q 026201           90 SVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLD-D-SLIVENLRRKRVFLEKAG  165 (241)
Q Consensus        90 Gp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d-~-~~i~~~l~~~~~~Le~~G  165 (241)
                      .-..+.++.++|.....+.  ..++++|.-..+   .+..               ..+. + +.+.+.+ +.++.++++|
T Consensus       121 ~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtd---a~~~---------------~~g~~~~~~~~~ai-~Ra~ay~eAG  181 (275)
T 2ze3_A          121 ELYDLDSQLRRIEAARAAIDASGVPVFLNARTD---TFLK---------------GHGATDEERLAETV-RRGQAYADAG  181 (275)
T ss_dssp             CBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECC---TTTT---------------TCSSSHHHHHHHHH-HHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHHHHHhHhhcCCCeEEEEech---hhhc---------------cccccchhhHHHHH-HHHHHHHHCC
Confidence            3455667888888887764  245666543111   0000               0000 1 2233333 4456788999


Q ss_pred             CcEEEEeCCchhhhHHHHhccCCCCeeeccH----HHHHHHHHhcCC
Q 026201          166 ARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE----CVAKELKEANMK  208 (241)
Q Consensus       166 ad~IvIaCNTAH~~~d~l~~~~~vPil~Iid----~t~~~i~~~~~k  208 (241)
                      ||+|+++|-+.-..+.++.+.+++|+ +++.    .+.+++.+.|.+
T Consensus       182 Ad~i~~e~~~~~~~~~~i~~~~~~P~-n~~~~~~~~~~~eL~~lGv~  227 (275)
T 2ze3_A          182 ADGIFVPLALQSQDIRALADALRVPL-NVMAFPGSPVPRALLDAGAA  227 (275)
T ss_dssp             CSEEECTTCCCHHHHHHHHHHCSSCE-EEECCTTSCCHHHHHHTTCS
T ss_pred             CCEEEECCCCCHHHHHHHHHhcCCCE-EEecCCCCCCHHHHHHcCCc
Confidence            99999999654466788889999996 4432    357899999875

>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}

Probab=87.11  E-value=0.59  Score=39.29  Aligned_cols=52  Identities=17%  Similarity=0.168  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHH-hCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          152 ENLRRKRVFLEK-AGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       152 ~~l~~~~~~Le~-~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      +.+.+.++.|.+ .|+|.|++.|--...+.+++  ..++|+++-.+.+++++.+.
T Consensus       171 ~~l~~~~~~l~~~~g~d~iiLGCT~~p~l~~~~--~~~vpviDs~~~~a~~~~~~  223 (226)
T 2zsk_A          171 EWIVRLIEKYRESEGIEGVILGCTELPLAIKQG--DVSVEVFDSAEIHMRKLIEL  223 (226)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECSSSGGGTCCGG--GSSSEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEECCCCHHHHhhcc--CCCCcEEChHHHHHHHHHHH
Confidence            345555567777 89999999998666665655  46799999988888887653

>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}

Probab=86.77  E-value=4.4  Score=34.77  Aligned_cols=119  Identities=13%  Similarity=0.186  Sum_probs=64.0

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++-.-   .+-.||..+.+...+.   ....+++++..                         .+.+...    
T Consensus        59 ~~~~Igvi~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-------------------------~~~~~~~----  106 (330)
T 3ctp_A           59 NSKTIGLMVPN---ISNPFFNQMASVIEEYAKNKGYTLFLCNTD-------------------------DDKEKEK----  106 (330)
T ss_dssp             -CCEEEEEESC---TTSHHHHHHHHHHHHHHHHTTCEEEEEECT-------------------------TCHHHHH----
T ss_pred             CCCEEEEEeCC---CCCcHHHHHHHHHHHHHHHCCCEEEEEeCC-------------------------CChHHHH----
Confidence            35789998532   1235777776666542   34455554311                         1122222    


Q ss_pred             HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      +.++.|...++|.|+++++...   +.++ ..++|++-+                  ...+++++.+.|.+        |
T Consensus       107 ~~~~~l~~~~vdgiI~~~~~~~---~~l~-~~~iPvV~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~  174 (330)
T 3ctp_A          107 TYLEVLQSHRVAGIIASRSQCE---DEYA-NIDIPVVAFENHILDNIITISSDNYNGGRMAFDHLYEKGCR--------K  174 (330)
T ss_dssp             HHHHHHHHTTCSEEEEETCCCS---GGGT-TCCSCEEEESSCCCTTSCEEEECHHHHHHHHHHHHHHTTCC--------S
T ss_pred             HHHHHHHhCCCCEEEECCCCCH---HHHH-hcCCCEEEEeccCCCCCCEEEeCHHHHHHHHHHHHHHCCCC--------e
Confidence            2335677889998884433221   2233 345665532                  12355666666654        9


Q ss_pred             EEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          218 IGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      |++++.+.     ..+..-|.+.++++|+
T Consensus       175 I~~i~~~~~~~~~~~R~~Gf~~al~~~g~  203 (330)
T 3ctp_A          175 ILHIKGPEVFEATELRYKGFLDGARAKDL  203 (330)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeCCccCccHHHHHHHHHHHHHHcCC
Confidence            99997542     1233447888888774

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=86.65  E-value=1.4  Score=39.27  Aligned_cols=106  Identities=14%  Similarity=0.172  Sum_probs=61.8

Q ss_pred             CCeEEEEe--CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201           80 ANTVGIVG--GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK  157 (241)
Q Consensus        80 ~k~IGIIG--GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~  157 (241)
                      .|+.|-+|  |-.-....++.++|.....+....+++|.-..+   ..+                .....++    +.+.
T Consensus       115 ~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtd---a~~----------------a~~g~~~----ai~R  171 (290)
T 2hjp_A          115 PKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVE---ALI----------------AGLGQQE----AVRR  171 (290)
T ss_dssp             SCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEEC---TTT----------------TTCCHHH----HHHH
T ss_pred             CccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeeh---Hhh----------------ccccHHH----HHHH
Confidence            46667776  444555668888888887765224555533110   000                0111222    2334


Q ss_pred             HHHHHHhCCcEEEEeC-CchhhhHHHHhccCC--CCee-ecc---HHHHHHHHHhc-CC
Q 026201          158 RVFLEKAGARCIVMPC-HLSHIWHDEVCKGCS--VPFL-HVS---ECVAKELKEAN-MK  208 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaC-NTAH~~~d~l~~~~~--vPil-~Ii---d~t~~~i~~~~-~k  208 (241)
                      ++.++++|||+|++.| -..-..+.++.+.++  +|++ ++.   ..+.+++.+.| .+
T Consensus       172 a~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~  230 (290)
T 2hjp_A          172 GQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVG  230 (290)
T ss_dssp             HHHHHHTTCSEEEECCCCSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEE
T ss_pred             HHHHHHcCCcEEEeCCCCCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCee
Confidence            4678899999999999 654455688888888  9977 332   24678888887 63

>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*

Probab=86.47  E-value=1.3  Score=38.12  Aligned_cols=75  Identities=13%  Similarity=0.082  Sum_probs=42.2

Q ss_pred             HHHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++.... ....++.+.+ .++|++-+                   ...+++++.+.|.+        |
T Consensus       109 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~  179 (332)
T 2hsg_A          109 LNNMLGKQVDGIIFMSGNVTEEHVEELKK-SPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHK--------N  179 (332)
T ss_dssp             HHHTSCCSSCCEEECCSSCCHHHHHHHTT-SSSCEEEESCCCSCTTSCEEEECHHHHHHHHHHHHHTTTCS--------C
T ss_pred             HHHHHhCCCcEEEEecCCCCHHHHHHHHh-CCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHCCCC--------E
Confidence            345667788877765432 2234455543 35665533                   22345566665544        9


Q ss_pred             EEEEecHH----HH--hhhhHHHHHHhcCC
Q 026201          218 IGVLAKNA----IL--TAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT~~----T~--~s~~Y~~~L~~~G~  241 (241)
                      ||+++.+.    +.  +..-|++.++++|+
T Consensus       180 I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~  209 (332)
T 2hsg_A          180 IAFVSGTLEEPINHAKKVKGYKRALTESGL  209 (332)
T ss_dssp             EEEEESCTTSHHHHTTHHHHHHHHHHTTTC
T ss_pred             EEEEeCCcccCccHHHHHHHHHHHHHHcCC
Confidence            99997653    11  22347888887774

>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A

Probab=86.38  E-value=2.4  Score=38.11  Aligned_cols=115  Identities=10%  Similarity=0.072  Sum_probs=63.4

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      .++|||+=.    .+-.||..+.+...+.   ....++++....           .               .       +
T Consensus        25 s~~Igvv~~----~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~-----------~---------------~-------~   67 (412)
T 4fe7_A           25 RHRITLLFN----ANKAYDRQVVEGVGEYLQASQSEWDIFIEED-----------F---------------R-------A   67 (412)
T ss_dssp             CEEEEEECC----TTSHHHHHHHHHHHHHHHHHTCCEEEEECC------------C---------------C--------
T ss_pred             CceEEEEeC----CcchhhHHHHHHHHHHHHhcCCCeEEEecCC-----------c---------------c-------c
Confidence            468999963    3456777777776642   344555544110           0               0       0


Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec-----------------------cHHHHHHHHHhcCCCCCCC
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----------------------SECVAKELKEANMKPLEAG  213 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I-----------------------id~t~~~i~~~~~k~~~~~  213 (241)
                      .++.|...++|.|++.... ....+.+.+ .++|+|-+                       ...+++++.+.|.+     
T Consensus        68 ~i~~l~~~~vDGiIi~~~~-~~~~~~l~~-~~iPvV~i~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~r-----  140 (412)
T 4fe7_A           68 RIDKIKDWLGDGVIADFDD-KQIEQALAD-VDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVN-----  140 (412)
T ss_dssp             -------CCCSEEEEETTC-HHHHHHHTT-CCSCEEEEEECCSSGGGSCSSEEEEECHHHHHHHHHHHHHHTTCC-----
T ss_pred             hhhhHhcCCCCEEEEecCC-hHHHHHHhh-CCCCEEEecCCccccccCCCCCEEEeCHHHHHHHHHHHHHHcCCc-----
Confidence            1245678899999884332 223344443 46776643                       12356677777665     


Q ss_pred             CCCEEEEEecHH-------HHhhhhHHHHHHhcCC
Q 026201          214 SPLRIGVLAKNA-------ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       214 ~~~rVGLLaT~~-------T~~s~~Y~~~L~~~G~  241 (241)
                         +||+++.+.       ..+..-|.+.++++|+
T Consensus       141 ---~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~  172 (412)
T 4fe7_A          141 ---RFAFYGLPESSGKRWATEREYAFRQLVAEEKY  172 (412)
T ss_dssp             ---EEEEECCCTTSCCHHHHHHHHHHHHHHTTSSS
T ss_pred             ---eEEEecccccccccHHHHHHHHHHHHHHHcCC
Confidence               999998653       2234447888887763

>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}

Probab=86.31  E-value=2.9  Score=34.95  Aligned_cols=121  Identities=8%  Similarity=0.030  Sum_probs=63.3

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCC-EEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFP-FLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL  154 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~-~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l  154 (241)
                      +.++||++=.-   .+-.||..+.+...+.   .... +++++.                         ..+.+...   
T Consensus         9 ~~~~Igvi~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~~~~---   57 (277)
T 3hs3_A            9 KSKMIGIIIPD---LNNRFYAQIIDGIQEVIQKEGYTALISFST-------------------------NSDVKKYQ---   57 (277)
T ss_dssp             CCCEEEEEESC---TTSHHHHHHHHHHHHHHHHTTCEEEEEECS-------------------------SCCHHHHH---
T ss_pred             CCCEEEEEeCC---CCChhHHHHHHHHHHHHHHCCCCEEEEEeC-------------------------CCChHHHH---
Confidence            35789998532   2235777777766643   4555 555441                         11222222   


Q ss_pred             HHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH---------------HHHHHHHhcCCCCCCCCCCEEE
Q 026201          155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC---------------VAKELKEANMKPLEAGSPLRIG  219 (241)
Q Consensus       155 ~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~---------------t~~~i~~~~~k~~~~~~~~rVG  219 (241)
                       +.++.|...++|.|++..    ..++++. ..++|++-+-..               ..+.+.+. +   - ...+|||
T Consensus        58 -~~~~~l~~~~vdgiIi~~----~~~~~~~-~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~-L---~-~G~~~I~  126 (277)
T 3hs3_A           58 -NAIINFENNNVDGIITSA----FTIPPNF-HLNTPLVMYDSANINDDIVRIVSNNTKGGKESIKL-L---S-KKIEKVL  126 (277)
T ss_dssp             -HHHHHHHHTTCSEEEEEC----CCCCTTC-CCSSCEEEESCCCCCSSSEEEEECHHHHHHHHHHT-S---C-TTCCEEE
T ss_pred             -HHHHHHHhCCCCEEEEcc----hHHHHHH-hCCCCEEEEcccccCCCCEEEEEChHHHHHHHHHH-H---H-hCCCEEE
Confidence             234567889999888876    2223332 236776644211               12222221 1   1 2345999


Q ss_pred             EEecHH-----HHhhhhHHHHHHhcCC
Q 026201          220 VLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       220 LLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      +++.+.     ..+..-|.+.++++|+
T Consensus       127 ~i~~~~~~~~~~~R~~Gf~~~l~~~g~  153 (277)
T 3hs3_A          127 IQHWPLSLPTIRERIEAMTAEASKLKI  153 (277)
T ss_dssp             EEESCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeCCCcCccHHHHHHHHHHHHHHCCC
Confidence            996542     1233447788887764

>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}

Probab=85.62  E-value=4.3  Score=35.11  Aligned_cols=116  Identities=9%  Similarity=0.037  Sum_probs=62.7

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.++||++=.-   .+-.||..+.+...+.   ....+++++... +                         +.    -.
T Consensus        63 ~~~~Igvi~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~-------------------------~~----~~  109 (333)
T 3jvd_A           63 RSALVGVIVPD---LSNEYYSESLQTIQQDLKAAGYQMLVAEANS-V-------------------------QA----QD  109 (333)
T ss_dssp             -CCEEEEEESC---SSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-H-------------------------HH----HH
T ss_pred             CCCEEEEEeCC---CcChHHHHHHHHHHHHHHHCCCEEEEECCCC-h-------------------------HH----HH
Confidence            35789998532   2235777777766543   345555554111 1                         11    12


Q ss_pred             HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~  216 (241)
                      +.++.|...++|.|++...     .+.+. ..++|++-+-                   ..+++++.+.|.        +
T Consensus       110 ~~~~~l~~~~vdGiIi~~~-----~~~~~-~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~--------~  175 (333)
T 3jvd_A          110 VVMESLISIQAAGIIHVPV-----VGSIA-PEGIPMVQLTRGELGPGFPRVLCDDEAGFFQLTESVLGGSG--------M  175 (333)
T ss_dssp             HHHHHHHHHTCSEEEECCC-----TTCCC--CCSCEEEECC----CCSCEEEECHHHHHHHHHHHHCCSSS--------C
T ss_pred             HHHHHHHhCCCCEEEEcch-----HHHHh-hCCCCEEEECccCCCCCCCEEEEChHHHHHHHHHHHHHCCC--------C
Confidence            3345677889999888765     11111 2355655431                   123344444443        4


Q ss_pred             EEEEEecHH---H--HhhhhHHHHHHhcCC
Q 026201          217 RIGVLAKNA---I--LTAGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~~---T--~~s~~Y~~~L~~~G~  241 (241)
                      +||+++.+.   +  .+..-|.+.++++|+
T Consensus       176 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~  205 (333)
T 3jvd_A          176 NIAALVGEESLSTTQERMRGISHAASIYGA  205 (333)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHCCC
Confidence            999998652   1  233447788887764

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=85.44  E-value=9.4  Score=32.16  Aligned_cols=73  Identities=14%  Similarity=-0.010  Sum_probs=41.7

Q ss_pred             HHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeec--------------------cHHHHHHHH-HhcCCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELK-EANMKPLEAG  213 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~I--------------------id~t~~~i~-~~~~k~~~~~  213 (241)
                      ++.|...++|.|++......   ..++.+++ .++|++-+                    ...+++++. +.|.+     
T Consensus        51 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~-----  124 (313)
T 3m9w_A           51 IENMINRGVDVLVIIPYNGQVLSNVVKEAKQ-EGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQG-----  124 (313)
T ss_dssp             HHHHHHTTCSEEEEECSSTTSCHHHHHHHHT-TTCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHHHCSSE-----
T ss_pred             HHHHHHcCCCEEEEeCCChhhhHHHHHHHHH-CCCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHHhCCCC-----
Confidence            45677889998888766554   33455543 24554432                    234566666 54443     


Q ss_pred             CCCEEEEEecHHH-----HhhhhHHHHHHhc
Q 026201          214 SPLRIGVLAKNAI-----LTAGFYQEKLQHE  239 (241)
Q Consensus       214 ~~~rVGLLaT~~T-----~~s~~Y~~~L~~~  239 (241)
                         +|++++....     .+..-|++.++++
T Consensus       125 ---~i~~i~g~~~~~~~~~R~~Gf~~~l~~~  152 (313)
T 3m9w_A          125 ---NYFLMGGSPVDNNAKLFRAGQMKVLKPY  152 (313)
T ss_dssp             ---EEEEEESCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ---cEEEEECCCCCccHHHHHHHHHHHHHhh
Confidence               9999964321     1233466666654

>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}

Probab=85.11  E-value=2.6  Score=36.78  Aligned_cols=75  Identities=15%  Similarity=0.116  Sum_probs=46.1

Q ss_pred             HHHHHHhCCcEEEEeCCch-hhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201          158 RVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR  217 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTA-H~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r  217 (241)
                      ++.|...++|.|++.+... ...++.+.+. ++|+|-+                   ...+++++.+.|.+        |
T Consensus       121 ~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~r--------~  191 (366)
T 3h5t_A          121 QQLVNNAAVDGVVIYSVAKGDPHIDAIRAR-GLPAVIADQPAREEGMPFIAPNNRKAIAPAAQALIDAGHR--------K  191 (366)
T ss_dssp             HHHHHTCCCSCEEEESCCTTCHHHHHHHHH-TCCEEEESSCCSCTTCCEEEECHHHHTHHHHHHHHHTTCC--------S
T ss_pred             HHHHHhCCCCEEEEecCCCChHHHHHHHHC-CCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------c
Confidence            4567788999888765433 2344555432 4454432                   33567778887765        9


Q ss_pred             EEEEec----------------------HHHHhhhhHHHHHHhcCC
Q 026201          218 IGVLAK----------------------NAILTAGFYQEKLQHEDC  241 (241)
Q Consensus       218 VGLLaT----------------------~~T~~s~~Y~~~L~~~G~  241 (241)
                      ||+++.                      ....+..-|.+.|+++|+
T Consensus       192 I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~  237 (366)
T 3h5t_A          192 IGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGI  237 (366)
T ss_dssp             EEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTC
T ss_pred             EEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCC
Confidence            999982                      112334458888888764

>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}

Probab=84.56  E-value=1.9  Score=36.31  Aligned_cols=76  Identities=16%  Similarity=0.195  Sum_probs=43.8

Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      .++.|...++|.|++.........+.+. ..++|+|-+                    ...+++++.+.|.+        
T Consensus        62 ~~~~l~~~~vdGiIi~~~~~~~~~~~~~-~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------  132 (301)
T 3miz_A           62 IWKMFQSHRIDGVLYVTMYRRIVDPESG-DVSIPTVMINCRPQTRELLPSIEPDDYQGARDLTRYLLERGHR--------  132 (301)
T ss_dssp             HHHHHHHTTCSEEEEEEEEEEECCCCCT-TCCCCEEEEEEECSSTTSSCEEEECHHHHHHHHHHHHHTTTCC--------
T ss_pred             HHHHHHhCCCCEEEEecCCccHHHHHHH-hCCCCEEEECCCCCCCCCCCEEeeChHHHHHHHHHHHHHcCCC--------
Confidence            3456788899988776543322222222 235665543                    22456666666654        


Q ss_pred             EEEEEecHHH-----HhhhhHHHHHHhcCC
Q 026201          217 RIGVLAKNAI-----LTAGFYQEKLQHEDC  241 (241)
Q Consensus       217 rVGLLaT~~T-----~~s~~Y~~~L~~~G~  241 (241)
                      |||+++.+..     .+..-|.+.++++|+
T Consensus       133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~  162 (301)
T 3miz_A          133 RIGYIRLNPILLGAELRLDAFRRTTSEFGL  162 (301)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHHHHHHTC
T ss_pred             eEEEEecCccchhHHHHHHHHHHHHHHcCC
Confidence            9999985321     233447788877763

>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A

Probab=83.59  E-value=19  Score=30.33  Aligned_cols=74  Identities=15%  Similarity=0.135  Sum_probs=40.8

Q ss_pred             HHHHHhCCcEEEEeCCchhh--hHHHHhccCCCCeeec-------------------------cHHHHHHHHHh-cCCCC
Q 026201          159 VFLEKAGARCIVMPCHLSHI--WHDEVCKGCSVPFLHV-------------------------SECVAKELKEA-NMKPL  210 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~--~~d~l~~~~~vPil~I-------------------------id~t~~~i~~~-~~k~~  210 (241)
                      +.|.+.+++.|+.+..+...  ..+.+ +..++|+|..                         ...+++.+.+. +.+  
T Consensus        63 ~~l~~~~v~~iig~~~s~~~~~~~~~~-~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--  139 (346)
T 1usg_A           63 NKIVNDGIKYVIGHLCSSSTQPASDIY-EDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQ--  139 (346)
T ss_dssp             HHHHHTTCCEEECCSSHHHHHHHHHHH-HHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCS--
T ss_pred             HHHHhCCCCEEEcCCCcHHHHHHHHHH-HHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCC--
Confidence            44556789988877554332  22332 2234454432                         12345555443 443  


Q ss_pred             CCCCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201          211 EAGSPLRIGVLAKNAIL---TAGFYQEKLQHEDC  241 (241)
Q Consensus       211 ~~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~  241 (241)
                            ||++++.+...   ...-|++.+++.|+
T Consensus       140 ------~i~~i~~~~~~~~~~~~~~~~~l~~~g~  167 (346)
T 1usg_A          140 ------RIAIIHDKQQYGEGLARSVQDGLKAANA  167 (346)
T ss_dssp             ------SEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred             ------eEEEEECCCchHHHHHHHHHHHHHHcCC
Confidence                  99999865322   23457788887764

>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}

Probab=83.18  E-value=17  Score=29.50  Aligned_cols=74  Identities=11%  Similarity=0.115  Sum_probs=43.0

Q ss_pred             HHHHHHHhC-CcEEEEeCCchh---hhHHHHhccCCCCeeec--------------------cHHHHHHHHHh----cCC
Q 026201          157 KRVFLEKAG-ARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELKEA----NMK  208 (241)
Q Consensus       157 ~~~~Le~~G-ad~IvIaCNTAH---~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~----~~k  208 (241)
                      .++.|.+.+ +|.|++......   ..++.+++ .++|++-+                    ...+++++.+.    |.+
T Consensus        50 ~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~  128 (276)
T 3ksm_A           50 ILSYHLSQAPPDALILAPNSAEDLTPSVAQYRA-RNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATLDLSKER  128 (276)
T ss_dssp             HHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHHHSCTTSCE
T ss_pred             HHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHH-CCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHHhcCcCCCc
Confidence            345677788 998888664322   23454443 24554432                    23456677776    544


Q ss_pred             CCCCCCCCEEEEEecH-----HHHhhhhHHHHHHhc
Q 026201          209 PLEAGSPLRIGVLAKN-----AILTAGFYQEKLQHE  239 (241)
Q Consensus       209 ~~~~~~~~rVGLLaT~-----~T~~s~~Y~~~L~~~  239 (241)
                              ||++++.+     ...+..-|.+.++++
T Consensus       129 --------~i~~i~~~~~~~~~~~R~~gf~~~l~~~  156 (276)
T 3ksm_A          129 --------NIALLRLRAGNASTDQREQGFLDVLRKH  156 (276)
T ss_dssp             --------EEEECBCCTTCHHHHHHHHHHHHHHTTC
T ss_pred             --------eEEEEEcCCCchhHHHHHHHHHHHHHhC
Confidence                    99999743     122334477777766

>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}

Probab=82.91  E-value=6  Score=33.21  Aligned_cols=124  Identities=14%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             cCCeEEEEeCCCh-HHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHH
Q 026201           79 QANTVGIVGGASV-DSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL  154 (241)
Q Consensus        79 ~~k~IGIIGGmGp-~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l  154 (241)
                      +.++||++=-... ..+-.||..+.+...+.   ....+++++...                       ....       
T Consensus         5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-----------------------~~~~-------   54 (294)
T 3qk7_A            5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP-----------------------GEKY-------   54 (294)
T ss_dssp             CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT-----------------------TCCC-------
T ss_pred             ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-----------------------hhhH-------
Confidence            4578999853110 22345777777766642   455566554110                       0000       


Q ss_pred             HHHHHHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCC
Q 026201          155 RRKRVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGS  214 (241)
Q Consensus       155 ~~~~~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~  214 (241)
                      .+..+.|...++|.|++.... ....++.+.+ .++|+|-+                   ...+++++.+.|.+      
T Consensus        55 ~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~------  127 (294)
T 3qk7_A           55 QSLIHLVETRRVDALIVAHTQPEDFRLQYLQK-QNFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQ------  127 (294)
T ss_dssp             HHHHHHHHHTCCSEEEECSCCSSCHHHHHHHH-TTCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHTTCC------
T ss_pred             HHHHHHHHcCCCCEEEEeCCCCChHHHHHHHh-CCCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHCCCc------
Confidence            122356778899988776543 2334455543 35665543                   23466777777655      


Q ss_pred             CCEEEEEecHH---H--HhhhhHHHHHHhcCC
Q 026201          215 PLRIGVLAKNA---I--LTAGFYQEKLQHEDC  241 (241)
Q Consensus       215 ~~rVGLLaT~~---T--~~s~~Y~~~L~~~G~  241 (241)
                        ||++++.+.   +  .+..-|.+.++++|+
T Consensus       128 --~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~  157 (294)
T 3qk7_A          128 --RIAFVSTDARISYVDQRLQGYVQTMSEAGL  157 (294)
T ss_dssp             --CEEEEEESSCCHHHHHHHHHHHHHHHTTTC
T ss_pred             --eEEEEeCCcccchHHHHHHHHHHHHHHCCC
Confidence              999997542   1  234447888887764

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*

Probab=82.58  E-value=19  Score=29.66  Aligned_cols=35  Identities=9%  Similarity=0.041  Sum_probs=19.1

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEec
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCS  117 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S  117 (241)
                      .++||++-..   .+-.||..+.+...+.   ....+++++
T Consensus         2 ~~~Ig~i~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~   39 (290)
T 2fn9_A            2 KGKMAIVIST---LNNPWFVVLAETAKQRAEQLGYEATIFD   39 (290)
T ss_dssp             -CEEEEEESC---SSSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ceEEEEEeCC---CCChHHHHHHHHHHHHHHHcCCEEEEeC
Confidence            4689998632   1235666666665532   344555543

>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*

Probab=81.82  E-value=22  Score=29.87  Aligned_cols=65  Identities=11%  Similarity=-0.041  Sum_probs=36.0

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      .++|||+---   .+-.||..+.+...+.   ....+++++.                         ..+.+...    +
T Consensus         3 ~~~Igvi~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-------------------------~~~~~~~~----~   50 (330)
T 3uug_A            3 KGSVGIAMPT---KSSARWIDDGNNIVKQLQEAGYKTDLQYA-------------------------DDDIPNQL----S   50 (330)
T ss_dssp             CCEEEEEECC---SSSTHHHHHHHHHHHHHHHTTCEEEEEEC-------------------------TTCHHHHH----H
T ss_pred             CcEEEEEeCC---CcchHHHHHHHHHHHHHHHcCCEEEEeeC-------------------------CCCHHHHH----H
Confidence            4689988632   1224677776666542   4555665541                         11222222    2


Q ss_pred             HHHHHHHhCCcEEEEeCCch
Q 026201          157 KRVFLEKAGARCIVMPCHLS  176 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTA  176 (241)
                      .++.|...++|.|++.....
T Consensus        51 ~i~~~~~~~vdgiIi~~~~~   70 (330)
T 3uug_A           51 QIENMVTKGVKVLVIASIDG   70 (330)
T ss_dssp             HHHHHHHHTCSEEEECCSSG
T ss_pred             HHHHHHHcCCCEEEEEcCCc
Confidence            33566778999888765543

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=81.59  E-value=4  Score=36.38  Aligned_cols=106  Identities=12%  Similarity=0.135  Sum_probs=56.1

Q ss_pred             CCeEEEEeC--CChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201           80 ANTVGIVGG--ASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK  157 (241)
Q Consensus        80 ~k~IGIIGG--mGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~  157 (241)
                      .|+.|-+||  -.-....++.++|.....+....+++|.-..+   ..+                ....-++    +.+.
T Consensus       119 ~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtd---a~~----------------a~~g~~~----ai~R  175 (295)
T 1s2w_A          119 PKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVE---AFI----------------AGWGLDE----ALKR  175 (295)
T ss_dssp             --------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEEC---TTT----------------TTCCHHH----HHHH
T ss_pred             CccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeeh---HHh----------------ccccHHH----HHHH
Confidence            567787876  12234457788888777765234444433110   000                0011122    3344


Q ss_pred             HHHHHHhCCcEEEEeC-CchhhhHHHHhccCC--CCeeeccH----HHHHHHHHhcCC
Q 026201          158 RVFLEKAGARCIVMPC-HLSHIWHDEVCKGCS--VPFLHVSE----CVAKELKEANMK  208 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaC-NTAH~~~d~l~~~~~--vPil~Iid----~t~~~i~~~~~k  208 (241)
                      ++.++++|||+|++.| -..-..+.++.+.++  +|++-.+.    ...+++.+.|.+
T Consensus       176 a~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~  233 (295)
T 1s2w_A          176 AEAYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVS  233 (295)
T ss_dssp             HHHHHHTTCSEEEECCCSSSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCC
T ss_pred             HHHHHHcCCCEEEEcCCCCCHHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCc
Confidence            5678899999999988 333445566666666  88763322    457899999875

>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}

Probab=81.34  E-value=11  Score=31.06  Aligned_cols=38  Identities=8%  Similarity=0.032  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201          196 ECVAKELKEANMKPLEAGSPLRIGVLAKNA-----ILTAGFYQEKLQHEDC  241 (241)
Q Consensus       196 d~t~~~i~~~~~k~~~~~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~G~  241 (241)
                      ..+++++.+.|.+        ||++++.+.     ..+..-|++.++++|+
T Consensus       107 ~~a~~~L~~~G~~--------~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~  149 (277)
T 3cs3_A          107 TQAIEQFVNVGSK--------KVLLLSGPEKGYDSQERLAVSTRELTRFGI  149 (277)
T ss_dssp             HHHHHHHHHTTCS--------CEEEEECCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCc--------eEEEEeCCccCccHHHHHHHHHHHHHHcCC
Confidence            3456667776654        999997542     1233447788877764

>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*

Probab=80.59  E-value=26  Score=29.79  Aligned_cols=74  Identities=11%  Similarity=0.101  Sum_probs=41.4

Q ss_pred             HHHHHHhCCcEEEEeCCch--hhhHHHHhccCCCCeeec--------------------------cHHHHHHHHHh-c-C
Q 026201          158 RVFLEKAGARCIVMPCHLS--HIWHDEVCKGCSVPFLHV--------------------------SECVAKELKEA-N-M  207 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTA--H~~~d~l~~~~~vPil~I--------------------------id~t~~~i~~~-~-~  207 (241)
                      ++.|...++|.|+++.+..  ...++.+.+. ++|++-+                          ...+++++.+. | .
T Consensus        97 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~  175 (342)
T 1jx6_A           97 LMEALKSKSDYLIFTLDTTRHRKFVEHVLDS-TNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKH  175 (342)
T ss_dssp             HHHHHHTTCSEEEECCSSSTTHHHHHHHHHH-CSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHhcCCCEEEEeCChHhHHHHHHHHHHc-CCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCC
Confidence            3456778999999955432  2344555432 4554322                          12355666665 4 4


Q ss_pred             CCCCCCCCCEEEEEecHHH----HhhhhHHHHHHhcC
Q 026201          208 KPLEAGSPLRIGVLAKNAI----LTAGFYQEKLQHED  240 (241)
Q Consensus       208 k~~~~~~~~rVGLLaT~~T----~~s~~Y~~~L~~~G  240 (241)
                      +        +|++++....    .+..-|.+.++++|
T Consensus       176 ~--------~I~~i~~~~~~~~~~R~~Gf~~~l~~~~  204 (342)
T 1jx6_A          176 T--------YYSVLYFSEGYISDVRGDTFIHQVNRDN  204 (342)
T ss_dssp             C--------EEEEECCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             c--------eEEEEEcCCcchhhHHHHHHHHHHHhCC
Confidence            4        9999975421    22333667776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1jfla1	115	c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Py	1e-21

>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 115

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Aspartate racemase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 84.6 bits (209), Expect = 1e-21
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 18/127 (14%)

Query: 82  TVGIVGGASVDSTLNLLGKLVQLSGEEND---FPFLLCSDPLLNKELLSHDRSSFSSLNC 138
           T+GI+GG    +T  L  ++V  +  + D      ++ ++P +       DR+++     
Sbjct: 3   TIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQI------PDRTAYILGKG 56

Query: 139 KGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECV 198
           +              L      LE+ GA  I+MPC+ +H + +++ K   +P + + E  
Sbjct: 57  ED---------PRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEET 107

Query: 199 AKELKEA 205
           AK++KE 
Sbjct: 108 AKKVKEL 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1jfla1	115	Aspartate racemase {Archaeon Pyrococcus horikoshii	100.0
d1b74a1	105	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	99.45
d1jfla2	113	Aspartate racemase {Archaeon Pyrococcus horikoshii	96.6
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	95.13
d2nzug1	275	Glucose-resistance amylase regulator CcpA, C-termi	95.05
d1byka_	255	Trehalose repressor, C-terminal domain {Escherichi	92.01
d1jyea_	271	Lac-repressor (lacR) core (C-terminal domain) {Esc	90.8
d1b74a2	147	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	88.94
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	85.42
d3ckma1	317	YraM C-terminal domain {Haemophilus influenzae [Ta	82.97
d2pjua1	186	Propionate catabolism operon regulatory protein Pr	82.35
d1m3ua_	262	Ketopantoate hydroxymethyltransferase PanB {Escher	81.14

>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Aspartate racemase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.4e-34  Score=227.53  Aligned_cols=112  Identities=23%  Similarity=0.363  Sum_probs=95.7

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR  156 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~  156 (241)
                      ||+|||||||||+||++||++|++.++++   +|++++++|++.+|++....               .++|+.....+.+
T Consensus         1 Mk~IGIIGGmgp~at~~yy~~i~~~~~~~~d~~~~~~il~s~~~~~~r~~~~---------------~~~~~~~~~~l~~   65 (115)
T d1jfla1           1 MKTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYI---------------LGKGEDPRPQLIW   65 (115)
T ss_dssp             CCCEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCCHHHHH---------------TTSSCCCHHHHHH
T ss_pred             CCEEEEccCcCHHHHHHHHHHHHHHHHHhcCCCCChhheeecCCHHHHHHHH---------------hccccchHHHHHH
Confidence            79999999999999999999999999754   99999999999887642210               1122333455677


Q ss_pred             HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhc
Q 026201          157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEAN  206 (241)
Q Consensus       157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~  206 (241)
                      .+++|+++|||+|+|||||+|.|+|+|++.+++|+|||+|+|++++++.|
T Consensus        66 ~~~~Le~~Ga~~i~i~cNT~H~~~d~i~~~~~iP~l~i~~~t~~~i~~~G  115 (115)
T d1jfla1          66 TAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELG  115 (115)
T ss_dssp             HHHHHHHHTCSEEECSCTGGGGGHHHHHHHCSSCBCCHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCCEEEEcCcHHHHHHHHHHHHCCCCEecHHHHHHHHHHhcC
Confidence            88999999999999999999999999999999999999999999998864

>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=99.45  E-value=4.2e-13  Score=103.08  Aligned_cols=100  Identities=19%  Similarity=0.220  Sum_probs=80.2

Q ss_pred             eEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHH
Q 026201           82 TVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF  160 (241)
Q Consensus        82 ~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~  160 (241)
                      +|||+. |+|.+   -.++.|.+..+..   +++-+.|..           .+|+       .+...++|.++..+.+++
T Consensus         2 kIgifDSGiGGL---tVl~~l~~~lP~~---~~iY~~D~a-----------~~PY-------G~ks~~~I~~~~~~~~~~   57 (105)
T d1b74a1           2 KIGIFDSGVGGL---TVLKAIRNRYRKV---DIVYLGDTA-----------RVPY-------GIRSKDTIIRYSLECAGF   57 (105)
T ss_dssp             EEEEEESSSTHH---HHHHHHHHHSSSC---EEEEEECGG-----------GCCG-------GGSCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCHH---HHHHHHHHHCCCC---CEEEEecCC-----------CCCC-------CCCCHHHHHHHHHHHHHH
Confidence            599999 99998   6667777777654   344434332           2233       456778999999999999


Q ss_pred             HHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          161 LEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       161 Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      |.+.|+|+||+||||++.. ++++++.+++|+++++++.++.+.+.
T Consensus        58 l~~~~~~~iViACNTaS~~al~~lr~~~~~PiiGvi~P~ik~A~~~  103 (105)
T d1b74a1          58 LKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKK  103 (105)
T ss_dssp             HHTTTCSEEEECCHHHHHHHHHHHHHHSSSCEEESHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEecCcHHHHHHHHHHHHCCCCEEEeehHHHHHHHHh
Confidence            9999999999999999987 69999999999999999988877654

>d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Aspartate racemase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.60  E-value=0.003  Score=46.11  Aligned_cols=58  Identities=22%  Similarity=0.306  Sum_probs=43.9

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201          146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA  205 (241)
Q Consensus       146 d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~  205 (241)
                      +.+.....+...++.|.+.|+|.|+++|-=.+..++++.  .++|+|+-.+..++++.+.
T Consensus        52 ~~~~~~~~~~~~~~~l~~~g~d~iILGCTelpll~~~~~--~~~~~iD~~~~la~~~v~~  109 (113)
T d1jfla2          52 NLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD--LKVPLIDPMDVIAEVAVKV  109 (113)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCSEEEECSHHHHHHCCGGG--CSSCEECHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHhhhhhcCCCCEEEEccccHHHHhhhhc--CCCcEECcHHHHHHHHHHH
Confidence            334455567777888999999999999985555556554  5799999989888877654

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.24  Score=39.17  Aligned_cols=62  Identities=10%  Similarity=0.108  Sum_probs=35.5

Q ss_pred             HHHHHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGS  214 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~~~  214 (241)
                      +.++.|.+.++|.+++. ++..........+.-++|++.+                    ...+.+.+.+.|.+      
T Consensus        47 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~G~~------  120 (282)
T d1dbqa_          47 AYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHR------  120 (282)
T ss_dssp             HHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCCSSSCEEEEECHHHHHHHHHHHHHHTTCC------
T ss_pred             HHHHHHHhcCCCEEeeecccccchhhhhHHhhcCCCceEEEecccccccceEEEecccchhhhhhhhhcccccc------
Confidence            44567889999986554 4444444433333345665543                    12344556666654      


Q ss_pred             CCEEEEEecHH
Q 026201          215 PLRIGVLAKNA  225 (241)
Q Consensus       215 ~~rVGLLaT~~  225 (241)
                        +|++++...
T Consensus       121 --~i~~i~~~~  129 (282)
T d1dbqa_         121 --EIGVIPGPL  129 (282)
T ss_dssp             --SEEEECCC-
T ss_pred             --ccccccCCc
Confidence              899987554

>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Glucose-resistance amylase regulator CcpA, C-terminal domain
species: Bacillus megaterium [TaxId: 1404]

Probab=95.05  E-value=0.12  Score=41.19  Aligned_cols=121  Identities=13%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201           79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR  155 (241)
Q Consensus        79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~  155 (241)
                      +.+|||||=   |.-+-.||..+.+...+.   ....+++++-                         ..+.+.-.    
T Consensus         2 kt~tIgvvv---p~l~~~f~~~~~~gi~~~~~~~g~~~~~~~~-------------------------~~~~~~e~----   49 (275)
T d2nzug1           2 KTTTVGVII---PDISNIFYAELARGIEDIATMYKYNIILSNS-------------------------DQNQDKEL----   49 (275)
T ss_dssp             CCSEEEEEE---SCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-------------------------TTCHHHHH----
T ss_pred             cCCEEEEEC---CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEC-------------------------CCCHHHHH----
Confidence            568999883   222345777777666643   4556666551                         11222222    


Q ss_pred             HHHHHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCC
Q 026201          156 RKRVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP  215 (241)
Q Consensus       156 ~~~~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~  215 (241)
                      +.++.+...++|.+++. ++........+++. ++|++-+                   +..+++++.+.|.+       
T Consensus        50 ~~i~~~~~~~vdgii~~~~~~~~~~~~~l~~~-~~pvv~~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~G~~-------  121 (275)
T d2nzug1          50 HLLNNMLGKQVDGIIFMSGNVTEEHVEELKKS-PVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHK-------  121 (275)
T ss_dssp             HHHHHHHTTCCSEEEECCSCCCHHHHHHHHHC-SSCEEEESCCCTTCCSCEEEECHHHHHHHHHHHHHHTTCS-------
T ss_pred             HHHHHHHhcCCceeeccccchhhHHHHHHhhc-cccccccccccccccccccccccccchhHHHHHHHHhccc-------
Confidence            23355667788876644 45444445554432 3333332                   34567778887766       


Q ss_pred             CEEEEEecH------HHHhhhhHHHHHHhcC
Q 026201          216 LRIGVLAKN------AILTAGFYQEKLQHED  240 (241)
Q Consensus       216 ~rVGLLaT~------~T~~s~~Y~~~L~~~G  240 (241)
                       +|++++-+      .....+.|.+.+++.|
T Consensus       122 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g  151 (275)
T d2nzug1         122 -NIAFVSGTLEEPINHAKKVKGYKRALTESG  151 (275)
T ss_dssp             -CEEEEESCTTSHHHHTTHHHHHHHHHHHTT
T ss_pred             -ceEEEecCcccchhhhHHHHHHHHHHHHcC
Confidence             99999722      1233355666666655

>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Trehalose repressor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.01  E-value=0.74  Score=36.41  Aligned_cols=122  Identities=11%  Similarity=0.080  Sum_probs=66.7

Q ss_pred             CCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201           80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR  158 (241)
Q Consensus        80 ~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~  158 (241)
                      .|+||||= ++.-.....+++-|.+...+. ...+++++                         ...+.+..    .+.+
T Consensus         2 ~k~Igvi~p~~~~~~~~~~~~~i~~~~~~~-Gy~~~~~~-------------------------s~~d~~~~----~~~i   51 (255)
T d1byka_           2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQ-GYDPIMME-------------------------SQFSPQLV----AEHL   51 (255)
T ss_dssp             CCEEEEEESCTTCHHHHHHHHHHHHHHHHH-TCEEEEEE-------------------------CTTCHHHH----HHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEe-------------------------CCCCHHHH----HHHH
Confidence            47899886 566665566666666666555 33444433                         01122222    2344


Q ss_pred             HHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec-----------------cHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 026201          159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRIGVL  221 (241)
Q Consensus       159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I-----------------id~t~~~i~~~~~k~~~~~~~~rVGLL  221 (241)
                      +.|.+.++|.|++.--+.+.  +++....++|++-+                 ...+++++.+.|.+        +|+++
T Consensus        52 ~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~p~v~i~~~~~~~~~v~~D~~~~g~~~~~~L~~~g~~--------~i~~i  121 (255)
T d1byka_          52 GVLKRRNIDGVVLFGFTGIT--EEMLAHWQSSLVLLARDAKGFASVCYDDEGAIKILMQRLYDQGHR--------NISYL  121 (255)
T ss_dssp             HHHHTTTCCEEEEECCTTCC--TTTSGGGSSSEEEESSCCSSCEEEEECHHHHHHHHHHHHHHTTCC--------CEEEE
T ss_pred             HHHHhccccceeeccccchH--HHHHHHcCCCEEEeccCCCCCCEEEeCcHHHHHHHHHHHHHhccc--------ccccc
Confidence            67888999977664222221  12222222332221                 34567778777765        99999


Q ss_pred             ecHH---H---HhhhhHHHHHHhcCC
Q 026201          222 AKNA---I---LTAGFYQEKLQHEDC  241 (241)
Q Consensus       222 aT~~---T---~~s~~Y~~~L~~~G~  241 (241)
                      +.+.   +   .+..-|.+.++++|+
T Consensus       122 ~~~~~~~~~~~~r~~g~~~~~~~~~i  147 (255)
T d1byka_         122 GVPHSDVTTGKRRHEAYLAFCKAHKL  147 (255)
T ss_dssp             CCCTTSTTTTHHHHHHHHHHHHHTTC
T ss_pred             CCCcccccHHHHHhhHHHHHHHHcCC
Confidence            7532   2   123457778877764

>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Lac-repressor (lacR) core (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=90.80  E-value=3  Score=32.88  Aligned_cols=75  Identities=16%  Similarity=0.070  Sum_probs=42.6

Q ss_pred             HHHHHHHhCCcEEEE-eCCchhhh-HHHHhccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201          157 KRVFLEKAGARCIVM-PCHLSHIW-HDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPL  216 (241)
Q Consensus       157 ~~~~Le~~Gad~IvI-aCNTAH~~-~d~l~~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~~  216 (241)
                      .++.|.++++|.|++ +....... ..++. ..++|+|-+                  ...+++++.++|.+        
T Consensus        49 ~l~~l~~~~vdgiIl~~~~~~~~~~~~~~~-~~~iPvV~~d~~~~~~~~~V~~D~~~~~~~~~~~L~~~G~~--------  119 (271)
T d1jyea_          49 AVHNLLAQRVSGLIINYPLDDQDAIAVEAA-CTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQ--------  119 (271)
T ss_dssp             HHHHHHTTTCSCEEEESCCCHHHHHHHHHH-TTTSCEEESSSCTTSSSCEEEECHHHHHHHHHHHHHHHTCC--------
T ss_pred             HHHHHHhcCCCEEEeccccCchhHHHHHHH-hcCCCeeeeeccccccCCccccchhhccccceeeeeccccc--------
Confidence            345788889997776 44443322 23333 334555433                  23466777777765        


Q ss_pred             EEEEEecH-----HHHhhhhHHHHHHhcC
Q 026201          217 RIGVLAKN-----AILTAGFYQEKLQHED  240 (241)
Q Consensus       217 rVGLLaT~-----~T~~s~~Y~~~L~~~G  240 (241)
                      +|++++-+     ...+..-|++.++++|
T Consensus       120 ~i~~i~~~~~~~~~~~R~~g~~~~~~~~~  148 (271)
T d1jyea_         120 QIALLAGPLSSVSARLRLAGWHKYLTRNQ  148 (271)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccccchHHhhhHHHHHHhhhcc
Confidence            89999621     1222233677777765

>d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=88.94  E-value=0.26  Score=37.69  Aligned_cols=119  Identities=12%  Similarity=0.159  Sum_probs=64.5

Q ss_pred             CeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHH
Q 026201           81 NTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF  160 (241)
Q Consensus        81 k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~  160 (241)
                      |+|||||=-+...+- +|++..+..    ...++....|.+-+.+.               ....+.+.+.+.+.+..+.
T Consensus         2 k~IgVlAT~~Tv~s~-~y~~~i~~~----~~~v~~~~~~~lv~~IE---------------~g~~~~~~~~~~i~~~l~~   61 (147)
T d1b74a2           2 KKIGVIGTPATVKSG-AYQRKLEEG----GADVFAKACPLFAPLAE---------------EGLLEGEITRKVVEHYLKE   61 (147)
T ss_dssp             SEEEEEECHHHHHHC-HHHHHHHTT----SCEEEEEECCCCTTTCC---------------TTTSSSTTHHHHHHHHTTT
T ss_pred             CEEEEEECHHHHhhH-HHHHHHHhc----CCcEEEeccHHHHHHHH---------------cCCcccHHHHHHHHHHHHH
Confidence            789999644555444 444443321    23344334443322211               1112223344445544444


Q ss_pred             HHHhCCcEEEEeCCchhh--hHHHHhccC-CCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHH
Q 026201          161 LEKAGARCIVMPCHLSHI--WHDEVCKGC-SVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI  226 (241)
Q Consensus       161 Le~~Gad~IvIaCNTAH~--~~d~l~~~~-~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T  226 (241)
                      | ..++|.+|+.|-  |+  ..+.+++.+ ++.+|+=.+++++.+++. ++   ......+=++.|...
T Consensus        62 l-~~~id~lvLGCT--HyP~l~~~i~~~~~~v~iIDpa~~vA~~~~~~-l~---~~~~~~~~~~~T~~~  123 (147)
T d1b74a2          62 F-KGKIDTLILGCT--HYPLLKKEIKKFLGDAEVVDSSEALSLSLHNF-IK---DDGSSSLELFFTDLS  123 (147)
T ss_dssp             T-TTTCSEEEECCC--CTTSCHHHHHHHHCSCEEECHHHHHHHHTTTT-CC---CCSCCCEEEEESSCC
T ss_pred             h-hhcCcEEEEecC--cchhHHHHHHHHCCCCEEEECHHHHHHHHHHH-HH---hcCCCCeEEEEcCCC
Confidence            4 468999999997  65  358888765 477777667777766543 11   122335556777654

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=85.42  E-value=0.9  Score=38.28  Aligned_cols=105  Identities=15%  Similarity=0.194  Sum_probs=70.6

Q ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201           80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV  159 (241)
Q Consensus        80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~  159 (241)
                      +|+.|..+|.--....++.++|.....+...++++|.-..+..   ..                 ..   +-+.+.+ ++
T Consensus       118 pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~---~~-----------------~g---~~eAi~R-~~  173 (289)
T d1muma_         118 AKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDAL---AV-----------------EG---LDAAIER-AQ  173 (289)
T ss_dssp             CSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCH---HH-----------------HC---HHHHHHH-HH
T ss_pred             ccccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccc---cc-----------------cC---HHHHHHH-HH
Confidence            5777888887777888999999888776545566664432211   00                 01   2233333 34


Q ss_pred             HHHHhCCcEEEEeCCchhhhHHHHhccCCCCee-eccH------HHHHHHHHhcCC
Q 026201          160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK  208 (241)
Q Consensus       160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil-~Iid------~t~~~i~~~~~k  208 (241)
                      ..+++|||+|.+++-+.-..+.++.+.+++|++ ++..      .+.+++.+.|++
T Consensus       174 aY~eAGAD~vf~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~eL~~~Gv~  229 (289)
T d1muma_         174 AYVEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVA  229 (289)
T ss_dssp             HHHHTTCSEEEETTCCCHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTTCS
T ss_pred             HhhhcCCcEEEecCCCCHHHHHHHHHhcCCCEEEeecCcCCCccchHHHHHHhccc
Confidence            557999999999998766667888888888875 4433      157889999875

>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: YraM C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=82.97  E-value=8.4  Score=29.90  Aligned_cols=120  Identities=12%  Similarity=0.125  Sum_probs=70.6

Q ss_pred             CeEEEEeCC-ChHH--HHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201           81 NTVGIVGGA-SVDS--TLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK  157 (241)
Q Consensus        81 k~IGIIGGm-Gp~A--T~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~  157 (241)
                      .+||+|-=| |+.|  +..+.+-+..+... ..+++++..+.          -++              .       ..+
T Consensus         1 ~kIG~~lPlSG~~a~~G~~~~~g~~lA~~~-~~i~l~~~D~~----------~~~--------------~-------~aa   48 (317)
T d3ckma1           1 SQIGLLLPLSGDGQILGTTIQSGFNDAKGN-STIPVQVFDTS----------MNS--------------V-------QDI   48 (317)
T ss_dssp             CCEEEEECCSSTTHHHHHHHHHHHHHHHTT-CCSCEEEEETT----------TSC--------------H-------HHH
T ss_pred             CcEEEEeCCCCccHHHHHHHHHHHHHhcCC-CCceEEEEcCC----------CCH--------------H-------HHH
Confidence            379999866 4554  44666666544432 46777775421          111              0       123


Q ss_pred             HHHHHHhCCcEEEEeCCchhh--hHHHHhccCCCCeeec----------------------cHHHHHHHHHhcCCCCCCC
Q 026201          158 RVFLEKAGARCIVMPCHLSHI--WHDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAG  213 (241)
Q Consensus       158 ~~~Le~~Gad~IvIaCNTAH~--~~d~l~~~~~vPil~I----------------------id~t~~~i~~~~~k~~~~~  213 (241)
                      .+.|++.|+++|+=|..+...  ..+.+.+...+|++..                      ++..++.+.+.+.|     
T Consensus        49 ~~~l~~~~v~~iiGp~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~la~~~~~~g~k-----  123 (317)
T d3ckma1          49 IAQAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVR-----  123 (317)
T ss_dssp             HHHHHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTCCCCTTEEECCCCHHHHHHHHHHHHHHTTCC-----
T ss_pred             HHHHHHcCCeEEEEcccccchHHHHHHHHhccCceEEecccccccccccceEEeccCCHHHHHHHHhhhhhcccc-----
Confidence            356888999999888765443  2455555556666543                      34556666666554     


Q ss_pred             CCCEEEEEecHHHHhhh---hHHHHHHhcC
Q 026201          214 SPLRIGVLAKNAILTAG---FYQEKLQHED  240 (241)
Q Consensus       214 ~~~rVGLLaT~~T~~s~---~Y~~~L~~~G  240 (241)
                         +|+++.-+...-.+   .+++.+++.|
T Consensus       124 ---~vail~~~~~~g~~~~~~~~~~~~~~G  150 (317)
T d3ckma1         124 ---NPLVAMPQNDLGQRVGNAFNVRWQQLA  150 (317)
T ss_dssp             ---SCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             ---eeEEeccccccchhHHHHHHHHHHHcC
Confidence               89999887654433   3555555554

>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: PrpR receptor domain-like
family: PrpR receptor domain-like
domain: Propionate catabolism operon regulatory protein PrpR
species: Escherichia coli [TaxId: 562]

Probab=82.35  E-value=2.6  Score=33.18  Aligned_cols=65  Identities=18%  Similarity=0.182  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH---HHHHHHHhcCCCCCCCCCCEEEEEecHHHHh
Q 026201          154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC---VAKELKEANMKPLEAGSPLRIGVLAKNAILT  228 (241)
Q Consensus       154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~---t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~  228 (241)
                      +..+.+.+++.|+|+|+-.--|++.    |++.+++|++.|--.   ..+.+++..      ..++|||+++=+.++.
T Consensus        40 v~~~~~~~~~~~~DviISRG~ta~~----ir~~~~iPVV~I~vs~~Dil~al~~a~------~~~~kiavV~~~~~~~  107 (186)
T d2pjua1          40 VTYIRKKLANERCDAIIAAGSNGAY----LKSRLSVPVILIKPSGYDVLQFLAKAG------KLTSSIGVVTYQETIP  107 (186)
T ss_dssp             HHHHHHHTTTSCCSEEEEEHHHHHH----HHTTCSSCEEEECCCHHHHHHHHHHTT------CTTSCEEEEEESSCCH
T ss_pred             HHHHHHHHHcCCCCEEEECchHHHH----HHHhCCCCEEEEcCCHhHHHHHHHHHH------HhCCCEEEEeCCccch
Confidence            3334456778899999988777654    688899999997322   233444331      1245899998765443

>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Escherichia coli [TaxId: 562]

Probab=81.14  E-value=1.1  Score=37.63  Aligned_cols=48  Identities=21%  Similarity=0.340  Sum_probs=37.6

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201          146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS  195 (241)
Q Consensus       146 d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii  195 (241)
                      +.++..+ |.+.++.||++||..|++=|-.. -...+|.+.+++|.|+|.
T Consensus       154 t~~ea~~-l~~~a~~le~AGaf~ivlE~vp~-~va~~It~~~~IPtIGIG  201 (262)
T d1m3ua_         154 GDEAGDQ-LLSDALALEAAGAQLLVLECVPV-ELAKRITEALAIPVIGIG  201 (262)
T ss_dssp             SHHHHHH-HHHHHHHHHHHTCCEEEEESCCH-HHHHHHHHHCSSCEEEES
T ss_pred             cHHHHHH-HHHHHHHHHhhcceEEEEecccH-HHHHHHHhhhcceeEeec
Confidence            3344443 55677889999999999998654 456899999999999984