Citrus Sinensis ID: 026229

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHVTSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPHTLIPVSTAEPTTLPAGVDARAIPDGDTITVYVSAADPRESACVPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHLGDKSSKQRGSSSTKVSNSTKRHRCTREFNAIWERSTE
Secondary Structure (PSIPRED)
cccHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccccccccccccccccccccHcHHHHHHHHHHHHHcccccccccHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccccEcccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccEEEEEEcccccccccccccEEEccccccEEcHHHHHEEEcccc
Coil and Loop (DISEMBL)
MGNALRFLYgkcckplteedsgslgphgvsAATVGVSALAQDLYHfeitsqvpegltrhVTSSKKAQANWYRKLSEAwreakpppttAEEAARLVIQTLSRHKKADVEGLLafyglplphtlipvstaepttlpagvdaraipdgdtitvyvsaadpresacvpgdVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIhlgdksskqrgssstkvsnstkrhrctREFNAIWERSTE
Flexible Loop (DISEMBL)
MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHVTSSKKAQANWYRKLSEAwreakpppttAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPHTLIPVSTAEPTTLPAGVDARAIPDGDTITVYVSAadpresacvpgdvQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHlgdksskqrgssstkvsnstkrhrctrefnaiwerste
Low Complexity Region (SEG)
MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHVTSSKKAQANWYRKLSEAWReakpppttaeeaaRLVIQTLSRHKKADVEGLLAFYGLPLPHTLIPVSTAEPTTLPAGVDARAIPDGDTITVYVSAADPRESACVPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHLGDKSSKQRGSSSTKVSNSTKRHRCTREFNAIWERSTE
Disordered region (IsUnstruct)
****LRFLYGKCCKPLT*********HGVSAATVGVSALAQDLYHFEITSQVPEGLTRH********ANWYRKL******************RLVIQTLSRHKKADVEGLLAFYGLPLPHTLIPVSTAEPTTLPAGVDARAIPDGDTITVYVSAA******CV***********************DALHQKIINAGYRLAIHL*************************************
Disordered Region (DISOPRED)
*GNALRFLYGKC********************TVGVSALAQDLYHFEITSQVPEGLTRHVTSSKKAQANWYRKLSEAWRE*K********AARLVIQTLSRHKKADVEGLLAFYGLPL***************PAGVDARAIPDGDTITVYVSAADPRESACVPGDVQMAAV**S*ARAERNYEQADALHQKIINAGYR****************************CTREFNAIWER***
Disordered Region (DISEMBL)
MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHVTSSKKAQANWYRKLSEA************EAARLVIQTLSRHKKADVEGLLAFYGLPLPHTLIPVSTAEPTTLPAGVDARAIPDGDTITVYVSAADPRESACVPGDVQMAA************EQADALHQKIINAGYRLAIHLGD********************RCTREFNAIWERSTE
Disordered Region (DISPRO)
*GNALRFLYGKCCKPLT**************ATVGVSALAQDLYHFEITSQVPEGLTRHVTSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPHT********PTTLPAGVDARAIPDGDTITVYVSAADPRESACVPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHLGD***********KV*NSTKRHRCTREFNAIWERS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHVTSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPHTLIPVSTAEPTTLPAGVDARAIPDGDTITVYVSAADPRESACVPGDVQxxxxxxxxxxxxxxxxxxxxxxxxxxxxGYRLAIHLGDKSSKQRGSSSTKVSNSTKRHRCTREFNAIWERSTE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q39635	338	Uncharacterized 38.1 kDa	N/A	no	0.821	0.585	0.600	2e-66

>sp|Q39635|Y38K_CORSE Uncharacterized 38.1 kDa protein OS=Corydalis sempervirens PE=2 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/213 (60%), Positives = 156/213 (73%), Gaps = 15/213 (7%)

Query: 1   MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
           MGNALRFLYG CCKP  E+       +GVS ATVGVSALA DL+HFE TSQ+PEGLT++V
Sbjct: 1   MGNALRFLYGHCCKPTVEDHYQPPHGYGVSTATVGVSALAHDLFHFENTSQIPEGLTKYV 60

Query: 61  TSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPL-- 118
            SSKKAQ NWY+KLS+AWREAKPPP TAE+A RL+I TL RH+KADV+GLL FYGLPL  
Sbjct: 61  VSSKKAQTNWYKKLSQAWREAKPPPQTAEQATRLIILTLKRHQKADVKGLLRFYGLPLSN 120

Query: 119 -PHTLIPVSTAEPT----------TLPAGVDARAIPDGDTITVYVSAADPRESACVPGDV 167
            P T      A P           TLP  VD +A+ DGDT+TVYV+  DPRE++ +P  V
Sbjct: 121 NPSTEATTVVAPPQADQGVKFELHTLP--VDVKAVADGDTVTVYVNTEDPREASNLPKSV 178

Query: 168 QMAAVRRSKARAERNYEQADALHQKIINAGYRL 200
           ++AA  R+KARA R+Y +ADAL + I++AGYR+
Sbjct: 179 KVAAQERAKARAVRDYVKADALQKNIVDAGYRV 211

Corydalis sempervirens (taxid: 3464)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
255559589	335	hypothetical protein RCOM_0688330 [Ricin	0.829	0.597	0.770	4e-89
224098748	335	predicted protein [Populus trichocarpa]	0.829	0.597	0.760	6e-84
388508924	335	unknown [Lotus japonicus]	0.829	0.597	0.717	4e-83
60476854	335	Ca(2+)-dependent DNase [Populus tomentos	0.829	0.597	0.751	4e-83
224112423	335	predicted protein [Populus trichocarpa]	0.829	0.597	0.732	5e-82
225448593	334	PREDICTED: uncharacterized 38.1 kDa prot	0.825	0.595	0.722	6e-82
363814280	335	uncharacterized protein LOC100795618 [Gl	0.829	0.597	0.712	2e-81
30688264	226	Ca(2+)-dependent nuclease-like protein [	0.821	0.876	0.665	3e-75
42571151	332	Ca(2+)-dependent nuclease-like protein [	0.821	0.596	0.665	1e-74
147801914	318	hypothetical protein VITISV_028586 [Viti	0.759	0.575	0.718	2e-74

>gi|255559589|ref|XP_002520814.1| hypothetical protein RCOM_0688330 [Ricinus communis] gi|223539945|gb|EEF41523.1| hypothetical protein RCOM_0688330 [Ricinus communis]

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 161/209 (77%), Positives = 179/209 (85%), Gaps = 9/209 (4%)

Query: 1   MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
           MGNALRFLYG CCKP T  DS SLGPHG+SAATVGVSALAQDL+HFEI SQVPEGL++HV
Sbjct: 1   MGNALRFLYGHCCKPSTTGDSESLGPHGISAATVGVSALAQDLFHFEINSQVPEGLSKHV 60

Query: 61  TSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPH 120
            SSKKAQANWYRKL EAWREAKPPP T EEA+RLVIQTL RH+KADVEGLLAFYGLPLPH
Sbjct: 61  VSSKKAQANWYRKLLEAWREAKPPPKTPEEASRLVIQTLKRHQKADVEGLLAFYGLPLPH 120

Query: 121 TLIPVSTAEPTTLPAG---------VDARAIPDGDTITVYVSAADPRESACVPGDVQMAA 171
           TLI +S+  PT+LP G         VD RA+PDGDTI+VYVS ADPRES+CVP +VQMAA
Sbjct: 121 TLIQLSSGVPTSLPDGVKFELLTLPVDPRAVPDGDTISVYVSTADPRESSCVPREVQMAA 180

Query: 172 VRRSKARAERNYEQADALHQKIINAGYRL 200
           V+RSKARAERNYE+AD L +KI +AGYR+
Sbjct: 181 VQRSKARAERNYEKADNLQKKITDAGYRV 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098748|ref|XP_002311254.1| predicted protein [Populus trichocarpa] gi|222851074|gb|EEE88621.1| predicted protein [Populus trichocarpa]

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 159/209 (76%), Positives = 172/209 (82%), Gaps = 9/209 (4%)

Query: 1   MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
           MGNALRFL G CCKP    DS SLGPHGVSAATVGVSALA+DL HFEITSQVPEGL +HV
Sbjct: 1   MGNALRFLCGHCCKPTEAGDSYSLGPHGVSAATVGVSALARDLLHFEITSQVPEGLGKHV 60

Query: 61  TSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPH 120
            SSKKAQANWYRKL EAW+EAKPPP T EEAARLVIQTL RH+KADVEGLLAFYGLPLPH
Sbjct: 61  VSSKKAQANWYRKLLEAWKEAKPPPKTPEEAARLVIQTLKRHQKADVEGLLAFYGLPLPH 120

Query: 121 TLIPVSTAEPTTLPAG---------VDARAIPDGDTITVYVSAADPRESACVPGDVQMAA 171
           TLI VST  P +LP G         VDA+A+ DGDTITVYVS  DPRESA VP +VQ A 
Sbjct: 121 TLIQVSTGIPASLPEGVKFEMPTLPVDAKAVADGDTITVYVSTTDPRESAYVPREVQTAT 180

Query: 172 VRRSKARAERNYEQADALHQKIINAGYRL 200
           V+RSKARAERNY +ADALH+KI+ AGYR+
Sbjct: 181 VQRSKARAERNYGKADALHKKIVEAGYRV 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508924|gb|AFK42528.1| unknown [Lotus japonicus]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 150/209 (71%), Positives = 172/209 (82%), Gaps = 9/209 (4%)

Query: 1   MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
           MGNALRFLY  CCKP    DS SLGPHGVS+ATVGVSALA DL+HFE TSQVPEGL++HV
Sbjct: 1   MGNALRFLYSNCCKPTAAGDSDSLGPHGVSSATVGVSALAHDLFHFENTSQVPEGLSKHV 60

Query: 61  TSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPH 120
            SSKKAQANWYRKL +AW+EAKPPP T EEAARLVIQTL RH+KADVEGLL FYGLPLPH
Sbjct: 61  KSSKKAQANWYRKLVDAWKEAKPPPRTPEEAARLVIQTLKRHQKADVEGLLTFYGLPLPH 120

Query: 121 TLIPVSTAEPTTLPAG---------VDARAIPDGDTITVYVSAADPRESACVPGDVQMAA 171
           TL+ V    PT+LP G         VDA+A+ DGDT+TVYVS ADPRES+ VP ++  AA
Sbjct: 121 TLVEVVAQPPTSLPHGVQYEMHTLPVDAKAVADGDTVTVYVSTADPRESSTVPANIHAAA 180

Query: 172 VRRSKARAERNYEQADALHQKIINAGYRL 200
           VRRS+AR+ RNYE+ADALH++II+AGYR+
Sbjct: 181 VRRSEARSRRNYEEADALHKQIIDAGYRM 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60476854|gb|AAX21543.1| Ca(2+)-dependent DNase [Populus tomentosa]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 157/209 (75%), Positives = 171/209 (81%), Gaps = 9/209 (4%)

Query: 1   MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
           MGNALRFL G CC P    DS SLGPHGVSAATVGVSALA+DL HFEITSQVPEGL +HV
Sbjct: 1   MGNALRFLCGHCCNPTEAGDSDSLGPHGVSAATVGVSALARDLLHFEITSQVPEGLGKHV 60

Query: 61  TSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPH 120
            SSKKAQANWYRKL EAW+EAKPPP T EEAARLVIQTL RH+KADVEGLLAFYGLPL H
Sbjct: 61  VSSKKAQANWYRKLLEAWKEAKPPPKTPEEAARLVIQTLKRHQKADVEGLLAFYGLPLAH 120

Query: 121 TLIPVSTAEPTTLPAG---------VDARAIPDGDTITVYVSAADPRESACVPGDVQMAA 171
           TL+ VST  PT+LP G         VDA+A+ DGDTITVYVS  DPRESA VP +VQ A 
Sbjct: 121 TLVQVSTGIPTSLPEGVKFEMPTLPVDAKAVADGDTITVYVSTTDPRESAYVPREVQTAT 180

Query: 172 VRRSKARAERNYEQADALHQKIINAGYRL 200
           V+RSKARAERNY +ADALH+KI+ AGYR+
Sbjct: 181 VQRSKARAERNYGKADALHKKIVEAGYRV 209

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112423|ref|XP_002316184.1| predicted protein [Populus trichocarpa] gi|222865224|gb|EEF02355.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 153/209 (73%), Positives = 169/209 (80%), Gaps = 9/209 (4%)

Query: 1   MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
           MGNALRFLYG CCKP T  DS SLGP GVSAATVGVSAL+ DL+HFEITSQVPEGL +HV
Sbjct: 1   MGNALRFLYGHCCKPTTAGDSDSLGPDGVSAATVGVSALSLDLFHFEITSQVPEGLDKHV 60

Query: 61  TSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPH 120
            SSKKAQANW+RKL EAW+EAKPPP T EE ARLVIQTL RH+KADVEGLLAFYGL LPH
Sbjct: 61  VSSKKAQANWFRKLLEAWKEAKPPPETPEEVARLVIQTLKRHQKADVEGLLAFYGLQLPH 120

Query: 121 TLIPVSTAEPTTLPAG---------VDARAIPDGDTITVYVSAADPRESACVPGDVQMAA 171
           TL  VS   PT+LP G         VD +A+ DGDTITVYVS  D RES+ VPG+V MAA
Sbjct: 121 TLAQVSAGGPTSLPQGVKFEMQTLPVDPKAVADGDTITVYVSTTDTRESSSVPGEVHMAA 180

Query: 172 VRRSKARAERNYEQADALHQKIINAGYRL 200
           V+RSKARAERNY +ADAL +KI+ AGYR+
Sbjct: 181 VQRSKARAERNYGKADALQKKIVEAGYRV 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448593|ref|XP_002278465.1| PREDICTED: uncharacterized 38.1 kDa protein [Vitis vinifera] gi|297736535|emb|CBI25406.3| unnamed protein product [Vitis vinifera]

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 151/209 (72%), Positives = 172/209 (82%), Gaps = 10/209 (4%)

Query: 1   MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
           MGNALRFLY  CCKP   E S SLGPHGVS +TVGVSALA DL+HFEITSQVPE L++HV
Sbjct: 1   MGNALRFLYANCCKPSASE-SESLGPHGVSTSTVGVSALAHDLFHFEITSQVPEKLSQHV 59

Query: 61  TSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPH 120
            SSKKAQANWY KL EAWRE+K PP T EEAARLVIQTL RHKKADVEGLLAFYGLPLPH
Sbjct: 60  VSSKKAQANWYNKLLEAWRESKSPPKTPEEAARLVIQTLKRHKKADVEGLLAFYGLPLPH 119

Query: 121 TLIPVSTAEPTTLPAG---------VDARAIPDGDTITVYVSAADPRESACVPGDVQMAA 171
           TL+ +S+  PT+LP G         VD +A+ DGDTITVYVS+ DPRESA VPG++Q+ A
Sbjct: 120 TLVQISSGFPTSLPQGVKFELQTLPVDVKAVADGDTITVYVSSTDPRESASVPGELQILA 179

Query: 172 VRRSKARAERNYEQADALHQKIINAGYRL 200
           V+R+KAR+ERNY +ADALH KII+AGYR+
Sbjct: 180 VQRAKARSERNYAKADALHDKIIDAGYRV 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814280|ref|NP_001242780.1| uncharacterized protein LOC100795618 [Glycine max] gi|255646555|gb|ACU23752.1| unknown [Glycine max]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/209 (71%), Positives = 172/209 (82%), Gaps = 9/209 (4%)

Query: 1   MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
           MGNALRFLY  CCKP    DS SLGPHGVS+ATVGVS LA DL+HF+ITSQVPEGL++HV
Sbjct: 1   MGNALRFLYSHCCKPTAAGDSESLGPHGVSSATVGVSTLAHDLFHFDITSQVPEGLSKHV 60

Query: 61  TSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPH 120
            SSKKAQANWYRKL +AW+EAKPPP T EEAARLVIQTL RH+KADVEGLLAFYGLPLPH
Sbjct: 61  VSSKKAQANWYRKLVDAWKEAKPPPKTPEEAARLVIQTLRRHQKADVEGLLAFYGLPLPH 120

Query: 121 TLIPVSTAEPTTLPAG---------VDARAIPDGDTITVYVSAADPRESACVPGDVQMAA 171
           TL+  +T   ++LP G         VDA+A+ DGDTITVYVS  DPRESA VPG+V  AA
Sbjct: 121 TLVQGTTQPLSSLPDGVQFEMHTLPVDAKAVADGDTITVYVSTTDPRESAFVPGNVHAAA 180

Query: 172 VRRSKARAERNYEQADALHQKIINAGYRL 200
           VRRS+ARA RN+ +ADALH++II++GYR+
Sbjct: 181 VRRSEARARRNFTEADALHKQIIDSGYRV 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688264|ref|NP_850330.1| Ca(2+)-dependent nuclease-like protein [Arabidopsis thaliana] gi|20260256|gb|AAM13026.1| unknown protein [Arabidopsis thaliana] gi|22136498|gb|AAM91327.1| unknown protein [Arabidopsis thaliana] gi|330254730|gb|AEC09824.1| Ca(2+)-dependent nuclease-like protein [Arabidopsis thaliana]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 168/209 (80%), Gaps = 11/209 (5%)

Query: 1   MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
           MGNAL FLYGKCCKP T +DS  LGPHGVSAATVGVSALA DL++FEITSQVPEGL R+V
Sbjct: 1   MGNALTFLYGKCCKPTTTDDS--LGPHGVSAATVGVSALAHDLFNFEITSQVPEGLGRYV 58

Query: 61  TSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPH 120
            SS+KAQANWYRK+ EAW++AKPPP TAEEA+RLV   L R++KADVEGLL+FYGLPL H
Sbjct: 59  QSSRKAQANWYRKILEAWKQAKPPPQTAEEASRLVTDILKRNQKADVEGLLSFYGLPLSH 118

Query: 121 TLIPVSTAEPTTLPAG---------VDARAIPDGDTITVYVSAADPRESACVPGDVQMAA 171
           TL+ V+   P +LP G         VD +A+ DGDTITVYVS ++P  S+ VP +V +AA
Sbjct: 119 TLVEVTVEAPVSLPEGILFEFQTLPVDPKAVADGDTITVYVSTSEPVVSSSVPREVNLAA 178

Query: 172 VRRSKARAERNYEQADALHQKIINAGYRL 200
           V+R+KAR +RNY +AD LHQKII++GYR+
Sbjct: 179 VQRAKAREKRNYPKADELHQKIIDSGYRV 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571151|ref|NP_973649.1| Ca(2+)-dependent nuclease-like protein [Arabidopsis thaliana] gi|330254731|gb|AEC09825.1| Ca(2+)-dependent nuclease-like protein [Arabidopsis thaliana]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 168/209 (80%), Gaps = 11/209 (5%)

Query: 1   MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
           MGNAL FLYGKCCKP T +DS  LGPHGVSAATVGVSALA DL++FEITSQVPEGL R+V
Sbjct: 1   MGNALTFLYGKCCKPTTTDDS--LGPHGVSAATVGVSALAHDLFNFEITSQVPEGLGRYV 58

Query: 61  TSSKKAQANWYRKLSEAWREAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPH 120
            SS+KAQANWYRK+ EAW++AKPPP TAEEA+RLV   L R++KADVEGLL+FYGLPL H
Sbjct: 59  QSSRKAQANWYRKILEAWKQAKPPPQTAEEASRLVTDILKRNQKADVEGLLSFYGLPLSH 118

Query: 121 TLIPVSTAEPTTLPAG---------VDARAIPDGDTITVYVSAADPRESACVPGDVQMAA 171
           TL+ V+   P +LP G         VD +A+ DGDTITVYVS ++P  S+ VP +V +AA
Sbjct: 119 TLVEVTVEAPVSLPEGILFEFQTLPVDPKAVADGDTITVYVSTSEPVVSSSVPREVNLAA 178

Query: 172 VRRSKARAERNYEQADALHQKIINAGYRL 200
           V+R+KAR +RNY +AD LHQKII++GYR+
Sbjct: 179 VQRAKAREKRNYPKADELHQKIIDSGYRV 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801914|emb|CAN70624.1| hypothetical protein VITISV_028586 [Vitis vinifera]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/192 (71%), Positives = 160/192 (83%), Gaps = 9/192 (4%)

Query: 20  DSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHVTSSKKAQANWYRKLSEAWR 79
           +S SLGPHGVS +TVGVSALA DL+HFEITSQVPE L++HV SSKKAQANWY KL EAWR
Sbjct: 9   ESESLGPHGVSTSTVGVSALAHDLFHFEITSQVPEKLSQHVVSSKKAQANWYNKLLEAWR 68

Query: 80  EAKPPPTTAEEAARLVIQTLSRHKKADVEGLLAFYGLPLPHTLIPVSTAEPTTLPAG--- 136
           E+K PP T EEAARLVIQTL RHKKADVEGLLAFYGLPLPHTL+ +S+  PT+LP G   
Sbjct: 69  ESKSPPKTPEEAARLVIQTLKRHKKADVEGLLAFYGLPLPHTLVQISSGFPTSLPQGVKF 128

Query: 137 ------VDARAIPDGDTITVYVSAADPRESACVPGDVQMAAVRRSKARAERNYEQADALH 190
                 VD +A+ DGDTITVYVS+ DPRESA VPG++Q+ AV+R+KAR+ERNY +ADALH
Sbjct: 129 ELQTLPVDVKAVADGDTITVYVSSTDPRESASVPGELQILAVQRAKARSERNYAKADALH 188

Query: 191 QKIINAGYRLAI 202
            KII+AGYRL +
Sbjct: 189 DKIIDAGYRLEV 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2063058	332	AtCaN2 "AT2G40410" [Arabidopsi	0.821	0.596	0.617	1.8e-62
TAIR|locus:2078486	323	CAN "Ca-2+ dependent nuclease"	0.780	0.582	0.521	2.3e-48

TAIR|locus:2063058 AtCaN2 "AT2G40410" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 129/209 (61%), Positives = 156/209 (74%)

Query:     1 MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
             MGNAL FLYGKCCKP T +DS  LGPHGVSAATVGVSALA DL++FEITSQVPEGL R+V
Sbjct:     1 MGNALTFLYGKCCKPTTTDDS--LGPHGVSAATVGVSALAHDLFNFEITSQVPEGLGRYV 58

Query:    61 TSSKKAQANWYRKLSEAWRXXXXXXXXXXXXXRLVIQTLSRHKKADVEGLLAFYGLPLPH 120
              SS+KAQANWYRK+ EAW+             RLV   L R++KADVEGLL+FYGLPL H
Sbjct:    59 QSSRKAQANWYRKILEAWKQAKPPPQTAEEASRLVTDILKRNQKADVEGLLSFYGLPLSH 118

Query:   121 TLIPVSTAEPTTLPAG---------VDARAIPDGDTITVYVSAADPRESACVPGDVQMAA 171
             TL+ V+   P +LP G         VD +A+ DGDTITVYVS ++P  S+ VP +V +AA
Sbjct:   119 TLVEVTVEAPVSLPEGILFEFQTLPVDPKAVADGDTITVYVSTSEPVVSSSVPREVNLAA 178

Query:   172 VRRSKARAERNYEQADALHQKIINAGYRL 200
             V+R+KAR +RNY +AD LHQKII++GYR+
Sbjct:   179 VQRAKAREKRNYPKADELHQKIIDSGYRV 207

GO:0004518 "nuclease activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0004520 "endodeoxyribonuclease activity" evidence=IDA

GO:0004521 "endoribonuclease activity" evidence=IDA

GO:0006308 "DNA catabolic process" evidence=IDA

GO:0006401 "RNA catabolic process" evidence=IDA

GO:0090305 "nucleic acid phosphodiester bond hydrolysis" evidence=IDA

TAIR|locus:2078486 CAN "Ca-2+ dependent nuclease" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 109/209 (52%), Positives = 139/209 (66%)

Query:     1 MGNALRFLYGKCCKPLTEEDSGSLGPHGVSAATVGVSALAQDLYHFEITSQVPEGLTRHV 60
             MGNA+R L  KC           L  HGVSA++ GVSAL++DL +FE TSQVPE L  +V
Sbjct:     1 MGNAIRLLR-KC-----------LNSHGVSASSGGVSALSRDLLNFETTSQVPEKLGSYV 48

Query:    61 TSSKKAQANWYRKLSEAWRXXXXXXXXXXXXXRLVIQTLSRHKKADVEGLLAFYGLPLPH 120
              SS+KAQANWYRK+ EAW+             RLVI  L  H+KADVEGLL+FYGLP PH
Sbjct:    49 VSSQKAQANWYRKILEAWKQAKPRPKTPEEASRLVIAALKNHQKADVEGLLSFYGLPSPH 108

Query:   121 TLIPVSTAEPTTLPAGV---------DARAIPDGDTITVYVSAADPRESACVPGDVQMAA 171
              L+ V T  P +LP GV         D +++ DGDT+TVYVS+ DP  S+ +P DV +AA
Sbjct:   109 NLVEVPTEAPVSLPKGVRFELNTLPVDTKSVADGDTVTVYVSSKDPLVSSSLPKDVSLAA 168

Query:   172 VRRSKARAERNYEQADALHQKIINAGYRL 200
             V+R+KAR ++NY +ADALH+ II +GYR+
Sbjct:   169 VKRAKAREKKNYTEADALHKTIIASGYRM 197


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      241       228   0.00081  113 3  11 22  0.43    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  178 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.77u 0.12s 19.89t   Elapsed:  00:00:01
  Total cpu time:  19.77u 0.12s 19.89t   Elapsed:  00:00:01
  Start:  Fri May 10 03:56:56 2013   End:  Fri May 10 03:56:57 2013

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA;ISS;IDA

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080687 hypothetical protein (335 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
cd07963	156	Anticodon_Ia_Cys Anticodon-binding domain of cyste	96.92
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	96.35
PRK14534	481	cysS cysteinyl-tRNA synthetase; Provisional	96.21
PRK14536	490	cysS cysteinyl-tRNA synthetase; Provisional	96.0
PLN02946	557	cysteine-tRNA ligase	95.58
PRK14535	699	cysS cysteinyl-tRNA synthetase; Provisional	95.53
TIGR00435	465	cysS cysteinyl-tRNA synthetase. This model finds t	95.52
COG0215	464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	93.51

>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases

Probab=96.92  E-value=0.0021  Score=51.75  Aligned_cols=41  Identities=17%  Similarity=0.370  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeecCC
Q 026229          165 GDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHLG  205 (241)
Q Consensus       165 ~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~~g  205 (241)
                      .+|.....+|.+||+++||++||.|.+.|...|+.+.+..+
T Consensus       110 ~~v~~Ll~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~i~Dt~~  150 (156)
T cd07963         110 AEIEALIAQRNQARKAKDWAEADRIRDELAAQGIILEDSPE  150 (156)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEECCC
Confidence            46777777799999999999999999999999999998643

This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=96.35  E-value=0.0065  Score=57.64  Aligned_cols=41  Identities=20%  Similarity=0.370  Sum_probs=37.5

Q ss_pred             CchHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeec
Q 026229          163 VPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIH  203 (241)
Q Consensus       163 VP~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~  203 (241)
                      .+.+|++...+|.+||++|||++||+|.+.|.+.|+.+.+.
T Consensus       414 ~~~~~~~li~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~v~D~  454 (463)
T PRK00260        414 LDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDT  454 (463)
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEc
Confidence            46788888888999999999999999999999999999975

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional

Probab=96.21  E-value=0.0082  Score=58.51  Aligned_cols=42  Identities=17%  Similarity=0.351  Sum_probs=37.7

Q ss_pred             CchHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeecC
Q 026229          163 VPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHL  204 (241)
Q Consensus       163 VP~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~~  204 (241)
                      .|.+|.....+|.+||++|||++||+|.+.|.+.|+.+.+..
T Consensus       432 ~~~~i~~li~~R~~aR~~Kd~~~AD~iR~~L~~~Gi~l~Dt~  473 (481)
T PRK14534        432 IDDNMKSLIEERRLAKCEKDFKRADEIREYFASKGFVLIDTE  473 (481)
T ss_pred             CHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHCCCEEEEcC
Confidence            456788888889999999999999999999999999998653

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional

Probab=96.00  E-value=0.011  Score=57.58  Aligned_cols=41  Identities=20%  Similarity=0.314  Sum_probs=37.1

Q ss_pred             chHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeecC
Q 026229          164 PGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHL  204 (241)
Q Consensus       164 P~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~~  204 (241)
                      |.+|.....+|.+||++|||++||+|.+.|.+.|+.+.+.-
T Consensus       442 ~~~i~~li~~R~~aR~~kdf~~AD~iR~~L~~~Gi~l~Dt~  482 (490)
T PRK14536        442 EEEIGQLIEARAHARQTKDFPLADEIRDKLKAEGIELEDTH  482 (490)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEEcC
Confidence            46788888889999999999999999999999999999753

>PLN02946 cysteine-tRNA ligase

Probab=95.58  E-value=0.019  Score=56.98  Aligned_cols=41  Identities=24%  Similarity=0.359  Sum_probs=37.0

Q ss_pred             chHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeecC
Q 026229          164 PGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHL  204 (241)
Q Consensus       164 P~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~~  204 (241)
                      |.+|.....+|.+||+++||++||+|.+.|.+.|+.+.+..
T Consensus       497 ~~~i~~li~~R~~aR~~Kdf~~AD~IR~~L~~~Gi~l~Dt~  537 (557)
T PLN02946        497 EEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVGIALMDSP  537 (557)
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEECC
Confidence            35788888889999999999999999999999999999763

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional

Probab=95.53  E-value=0.021  Score=58.44  Aligned_cols=41  Identities=20%  Similarity=0.326  Sum_probs=37.3

Q ss_pred             chHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeecC
Q 026229          164 PGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHL  204 (241)
Q Consensus       164 P~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~~  204 (241)
                      |.+|.....+|.+||++|||++||+|.+.|.+.|+.+.+..
T Consensus       651 ~~~i~~Li~~R~~AR~~Kdfa~AD~IRd~L~~~GI~veDt~  691 (699)
T PRK14535        651 NEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDNA  691 (699)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEEcC
Confidence            46788888889999999999999999999999999999753

>TIGR00435 cysS cysteinyl-tRNA synthetase

Probab=95.52  E-value=0.024  Score=54.15  Aligned_cols=39  Identities=26%  Similarity=0.504  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeec
Q 026229          165 GDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIH  203 (241)
Q Consensus       165 ~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~  203 (241)
                      .+|.+...+|.+||++|||++||+|.+.|.+.|+.+.+.
T Consensus       419 ~~i~~l~~~R~~ar~~k~~~~aD~iR~~L~~~Gi~~~D~  457 (465)
T TIGR00435       419 GEIEALIEERSIARKEKDFAKADEIRDELLKKGIVLEDT  457 (465)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEEC
Confidence            468788888999999999999999999999999999875

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=93.51  E-value=0.14  Score=50.40  Aligned_cols=43  Identities=19%  Similarity=0.283  Sum_probs=37.0

Q ss_pred             CchHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeecCC
Q 026229          163 VPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHLG  205 (241)
Q Consensus       163 VP~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~~g  205 (241)
                      ...+|...+.+|.+||+.|||++||++.+.|.+.|..+.+..+
T Consensus       415 ~~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~Gi~leD~~~  457 (464)
T COG0215         415 DDEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPD  457 (464)
T ss_pred             hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHCCcEEEECCC
Confidence            5577766666699999999999999999999999999887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	95.44
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	93.54
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	92.39

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}

Probab=95.44  E-value=0.014  Score=55.57  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=36.1

Q ss_pred             CchHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeec
Q 026229          163 VPGDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIH  203 (241)
Q Consensus       163 VP~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~  203 (241)
                      ++.+|.....+|.+||++|||++||++...|.+.|+.+.+.
T Consensus       452 ~~~~i~~li~~R~~ar~~kd~~~aD~iRd~L~~~Gi~l~D~  492 (501)
T 3sp1_A          452 IDENMKALIEERRIAKCEKNFKRADEIRDFFAKKGFVLVDT  492 (501)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC--
T ss_pred             hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEc
Confidence            56788788888999999999999999999999999998764

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}

Probab=93.54  E-value=0.013  Score=55.01  Aligned_cols=39  Identities=18%  Similarity=0.418  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeec
Q 026229          165 GDVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIH  203 (241)
Q Consensus       165 ~eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~  203 (241)
                      .+|.....+|.+||++|||++||++.+.|.+.|+.+.+.
T Consensus       415 ~~i~~li~~R~~ar~~kd~~~aD~iR~~L~~~Gi~l~D~  453 (462)
T 3tqo_A          415 QEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDS  453 (462)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEEc
Confidence            567677777999999999999999999999999998764

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B

Probab=92.39  E-value=0.024  Score=52.34  Aligned_cols=39  Identities=21%  Similarity=0.314  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhChHhHHHHHHHHHHccceeeecC
Q 026229          166 DVQMAAVRRSKARAERNYEQADALHQKIINAGYRLAIHL  204 (241)
Q Consensus       166 eV~~Aa~~R~~ARa~rdY~~ADaLqk~I~dAGYRvi~~~  204 (241)
                      +|.....+|.+||+++||++||+|.+.|.+.|+.+.+..
T Consensus       415 ~~~~l~~~r~~ar~~k~~~~aD~iR~~l~~~gi~~~d~~  453 (461)
T 1li5_A          415 EIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGP  453 (461)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEEcC
Confidence            465666779999999999999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d2g7sa2	116	Putative transcriptional regulator Atu0279 {Agroba	85.14

>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}

class: All alpha proteins
fold: Tetracyclin repressor-like, C-terminal domain
superfamily: Tetracyclin repressor-like, C-terminal domain
family: Tetracyclin repressor-like, C-terminal domain
domain: Putative transcriptional regulator Atu0279
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=85.14  E-value=0.56  Score=32.27  Aligned_cols=53  Identities=17%  Similarity=0.228  Sum_probs=46.8

Q ss_pred             ccCCcccccccccchHHHHHHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHhhh
Q 026229           50 SQVPEGLTRHVTSSKKAQANWYRKLSEAWREAK--PPPTTAEEAARLVIQTLSRH  102 (241)
Q Consensus        50 sqVPEgLs~hV~SSkKAQanWYkKLl~AwK~ak--PpP~T~eeAarLVi~tLk~h  102 (241)
                      ..+||.+.+-|........+|..++++.-++..  ++..+|++.|.+|+.+++|-
T Consensus        36 ~~~~~~v~~~~~~~~~~~~~~l~~~l~~a~~~g~~~~~~d~~~lA~~l~~~~~G~   90 (116)
T d2g7sa2          36 PVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFMATVHGA   90 (116)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCSSCHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999886  56678999999999988663