Citrus Sinensis ID: 026234

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVFVCLCTSIIVSVYCTS
Secondary Structure (PSIPRED)
ccccccccccccEEccccccccccccccccHHHHcccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccEEEcccccccccccEEEEcccccccEEEEEEEEccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHccEEcccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHEEEccccHcHccccccccccccccEccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHccHHHHcHHEHHHHHHHHHHcccccHHHHHHHHHcccccccEEEEEEEEEccccEEEEEEcccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
mgkrkrgdannpidivsstpedpghlskhrtcWLHTVAFLHARKMKISKQKIrnfeltapcflgtfscrrrskrrvkckntslikgknsssvkckDMITKrkknkldsgkfeHLLDNLWRSfsedkkagftyLDSLWfdlyrkpsskakVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCnfggsfesktrtpcMLLLDslemsnpwrfepdirkYVTLYFFGVFVCLCTSIIVSVYCTS
Flexible Loop (DISEMBL)
mgkrkrgdannpidivsstpedpghlSKHRTCWLHTVAFLHARKMKISKQkirnfeltapcflgtfscrrrskrrvkckntslikgknsssvkckdmitkrkknkldsgkfeHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVFVCLCTSIIVSVYCTS
Low Complexity Region (SEG)
MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFscrrrskrrvkckNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVFVCLCTSIIVSVYCTS
Disordered region (IsUnstruct)
****************************HRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRRRSKRRVKC*******************************KFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVFVCLCTSIIVSVYC**
Disordered Region (DISOPRED)
***************************************************************************************NSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFS*DKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVFVCLCTSIIVSVYCT*
Disordered Region (DISEMBL)
*********NNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRR*********NTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVFVCLCTSIIVSVYCTS
Disordered Region (DISPRO)
********ANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFS*******RVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVFVCLCTSIIVSVYCTS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVFVCLCTSIIVSVYCTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q0WKV8	774	Probable ubiquitin-like-s	no	no	0.240	0.074	0.387	2e-06
Q8L7S0	931	Probable ubiquitin-like-s	no	no	0.282	0.073	0.292	0.0001

>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis thaliana GN=ULP2A PE=2 SV=2

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 149 KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFG----GSFESKTRTPCMLLLDSLEM 204
           +V  W K   +F K Y+ +PI C  HW+L+I+C+ G       E+  R PC+L LDS++ 
Sbjct: 375 RVQKWTKNVDLFEKDYIFIPINCSFHWSLVIICHPGELVPSHVENPQRVPCILHLDSIKG 434

Query: 205 SN 206
           S+
Sbjct: 435 SH 436

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8

>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 14/82 (17%)

Query: 139 DLYRKPSSKA-------KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGG------ 185
           DL + PSS A       +V  W ++  +F K Y+ VP+    HW+L+++C+ G       
Sbjct: 447 DLDKDPSSIADGKAAFLRVRKWTRKVDMFGKDYIFVPVNYNLHWSLIVICHPGEVANRTD 506

Query: 186 -SFESKTRTPCMLLLDSLEMSN 206
              +   + PC+L +DS++ S+
Sbjct: 507 LDLDDSKKVPCILHMDSIKGSH 528

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
359491154	295	PREDICTED: uncharacterized protein LOC10	0.838	0.684	0.518	4e-55
255540373	294	sentrin/sumo-specific protease, putative	0.854	0.700	0.524	3e-53
224109184	298	predicted protein [Populus trichocarpa]	0.726	0.587	0.569	3e-52
388499368	284	unknown [Lotus japonicus]	0.485	0.411	0.666	1e-38
307136120	274	sentrin/sumo-specific protease [Cucumis	0.630	0.554	0.532	2e-38
449469608	274	PREDICTED: probable ubiquitin-like-speci	0.676	0.594	0.497	2e-37
356507339	279	PREDICTED: uncharacterized protein LOC10	0.489	0.422	0.627	8e-35
240255544	298	cysteine-type peptidase [Arabidopsis tha	0.767	0.620	0.409	3e-32
224136047	186	predicted protein [Populus trichocarpa]	0.419	0.543	0.683	7e-32
255547470	284	sentrin/sumo-specific protease, putative	0.485	0.411	0.588	5e-31

>gi|359491154|ref|XP_002262951.2| PREDICTED: uncharacterized protein LOC100251251 [Vitis vinifera] gi|297733618|emb|CBI14865.3| unnamed protein product [Vitis vinifera]

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 115/222 (51%), Positives = 145/222 (65%), Gaps = 20/222 (9%)

Query: 1   MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFEL--- 57
           M K+K  ++N PID+ S+  E     SKHR+CW H VA L A+  +++K +I   +    
Sbjct: 1   MVKKKPRNSNAPIDLASADSESYLDYSKHRSCWRHMVAHLQAQNKRMTKHEIEEIKEIFE 60

Query: 58  -TAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLD 116
            T PCF  TF    RSKRR+ CKN                +I +++K KLD+  FE    
Sbjct: 61  FTTPCFSNTFPRHERSKRRINCKN----------------IIIRKEKKKLDTAAFEWYFR 104

Query: 117 NLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWN 176
           NLW+SFS+DKK+ F YLD LWF  Y K SS+ KVL WIK+K IFS+KYV VPIVCW HW+
Sbjct: 105 NLWKSFSDDKKSSFGYLDCLWFSFYLKTSSREKVLNWIKKKRIFSRKYVFVPIVCWNHWS 164

Query: 177 LLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYV 218
           LLILC+FG S ESK R PCMLLLDSL+M+NP R EP+IRK+V
Sbjct: 165 LLILCHFGESLESKIRAPCMLLLDSLQMANPKRLEPNIRKFV 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540373|ref|XP_002511251.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223550366|gb|EEF51853.1| sentrin/sumo-specific protease, putative [Ricinus communis]

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 143/221 (64%), Gaps = 15/221 (6%)

Query: 1   MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHAR---KMKISKQKIRNFEL 57
           M KRK  D    +D+ S   E    +SKHR+CW H V  L+       K   +K+R F+L
Sbjct: 1   MAKRKPQDEFIVVDVDSPMSEVFARISKHRSCWKHMVTSLYTHGKKIKKKEAEKLRRFDL 60

Query: 58  TAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDN 117
            + CFLGTF  R+RS+RR+K K                 +I +++K +LDSG+F+    N
Sbjct: 61  ISQCFLGTFPTRQRSRRRIKHK------------FAITRVIKEKEKKRLDSGEFDCYFQN 108

Query: 118 LWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNL 177
           LW+SFS++K+  F YLDSLWF  Y K S K KVLTWIKRK IFSKKYVLVPIVCW HW+L
Sbjct: 109 LWKSFSKEKRTSFVYLDSLWFYWYLKASWKGKVLTWIKRKQIFSKKYVLVPIVCWGHWSL 168

Query: 178 LILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYV 218
           LI C+ G   ES  RTPCMLLLDSLEM+NP R EPDIRK+V
Sbjct: 169 LIFCHLGEVSESNDRTPCMLLLDSLEMANPRRLEPDIRKFV 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109184|ref|XP_002315114.1| predicted protein [Populus trichocarpa] gi|222864154|gb|EEF01285.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/195 (56%), Positives = 136/195 (69%), Gaps = 20/195 (10%)

Query: 27  SKHRTCWLHTVAFLHARKMKISK---QKIRNFELTAPCFLGTFSCRRRSKRRVKCKNTSL 83
           SKHRTCW H  A +HAR+ +++K   ++I +F+LT+PCFL T  CR RSK+R K  N   
Sbjct: 33  SKHRTCWKHIQARMHARRTRMTKKQAEEIESFKLTSPCFLQTIPCRERSKKRFKRNNA-- 90

Query: 84  IKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRK 143
                         ++K KK +LDS  F   ++NLW+SFSEDKK  F YLDSLWF +Y +
Sbjct: 91  --------------VSKLKK-ELDSVSFNCYMENLWKSFSEDKKMSFAYLDSLWFTMYTE 135

Query: 144 PSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLE 203
            SS  KVL WIKRKHIFSKKYVLVPIV W HW+LLI C+FG S  S+  TPCMLLLDSLE
Sbjct: 136 ASSGVKVLEWIKRKHIFSKKYVLVPIVRWCHWSLLIFCHFGESLLSENITPCMLLLDSLE 195

Query: 204 MSNPWRFEPDIRKYV 218
           M++P R EPDIRK+V
Sbjct: 196 MASPKRLEPDIRKFV 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499368|gb|AFK37750.1| unknown [Lotus japonicus]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 91/117 (77%)

Query: 103 KNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSK 162
           + KLDSG F++ L  +W SFSEDK+  F Y DSLWF LYR  SSK KVLTWIK++HIFSK
Sbjct: 85  RPKLDSGVFDNNLVKIWNSFSEDKRKPFAYFDSLWFSLYRAASSKDKVLTWIKKEHIFSK 144

Query: 163 KYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVT 219
            YV VPIVCW HW+LLI C+FG S +S TR+ CMLLLDSLEM NP R EPDIR++V 
Sbjct: 145 AYVFVPIVCWGHWSLLIFCHFGESLQSTTRSRCMLLLDSLEMVNPRRLEPDIRRFVV 201

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136120|gb|ADN33966.1| sentrin/sumo-specific protease [Cucumis melo subsp. melo]

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/167 (53%), Positives = 106/167 (63%), Gaps = 15/167 (8%)

Query: 52  IRNFELTAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKF 111
           ++ F+  +P   GT   RRR + + K              V C   I  RK+ KLDS  F
Sbjct: 34  VKKFQPVSPSVSGTGPVRRRRQLKKK--------------VGCNGAIPVRKR-KLDSRAF 78

Query: 112 EHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVC 171
           E+   NLWRS  E+KK  FTYLD LWF+LY K S + KVL WIK K IFSKKYV VPIVC
Sbjct: 79  EYCFQNLWRSSPEEKKIQFTYLDCLWFNLYLKASHRRKVLKWIKDKEIFSKKYVFVPIVC 138

Query: 172 WRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYV 218
           W HW+LLI C+F  S ESK R PCMLLLDSL+ +NP R EP+IRK+V
Sbjct: 139 WSHWSLLIFCHFDASPESKRRKPCMLLLDSLQEANPRRLEPEIRKFV 185

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469608|ref|XP_004152511.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus] gi|449487716|ref|XP_004157765.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/179 (49%), Positives = 113/179 (63%), Gaps = 16/179 (8%)

Query: 41  HARKMKISK-QKIRNFELTAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMIT 99
           H+  +++ + + ++N +  +P   G    RRR +   K        G+N +       I 
Sbjct: 22  HSNSVELEEPENVKNLQPVSPSISGMGPVRRRRQLTKKV-------GRNGA-------IP 67

Query: 100 KRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHI 159
            RK+ KLDS  FE+   NLWRS  E+KK  FTYLD LWF+LY K S + KVL WIK K I
Sbjct: 68  VRKR-KLDSRAFEYCFQNLWRSSPEEKKIQFTYLDCLWFNLYLKASHRRKVLKWIKDKEI 126

Query: 160 FSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYV 218
           FSKKYV VPIVCW HW+LLI C+F  S ESK R PCMLLLDSL+ +NP R EP+IRK+V
Sbjct: 127 FSKKYVFVPIVCWSHWSLLIFCHFDASPESKRRKPCMLLLDSLQEANPRRLEPEIRKFV 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507339|ref|XP_003522425.1| PREDICTED: uncharacterized protein LOC100780621 [Glycine max]

 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 89/118 (75%)

Query: 101 RKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIF 160
           R K KL+SG F+  L  +W+ FS D+   FT  DSLWF LYR   SK KVLTWIK++ IF
Sbjct: 78  RPKEKLNSGDFDIYLKKIWKIFSGDRLRHFTCFDSLWFSLYRAAPSKDKVLTWIKKEPIF 137

Query: 161 SKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYV 218
           SK YV VPIVCW HW+LLILC+FG S ES T++ CMLLLDSLEM+NP R EP+IR++V
Sbjct: 138 SKSYVFVPIVCWGHWSLLILCHFGESLESTTKSRCMLLLDSLEMTNPRRLEPEIRRFV 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255544|ref|NP_190417.4| cysteine-type peptidase [Arabidopsis thaliana] gi|332644900|gb|AEE78421.1| cysteine-type peptidase [Arabidopsis thaliana]

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/210 (40%), Positives = 115/210 (54%), Gaps = 25/210 (11%)

Query: 13  IDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQK-IRNFELTAPCFLGTFSCRRR 71
           + I+    ED      HRTCW H  A L     K  + K +  F+LTAPCF    + R R
Sbjct: 23  VTIIDDCEED--EYLHHRTCWKHIAAALSKCGSKPKRTKELEIFKLTAPCFYDECTRRGR 80

Query: 72  SKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFT 131
           S+RR+KCK                  +  + + KL+S  F   L+++WR FS++KK  F 
Sbjct: 81  SERRIKCK-----------------YLDSKLRKKLNSKAFVGYLEDVWRGFSDEKKNSFV 123

Query: 132 YLDSLWFDLYRKPSS--KAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFES 189
           YLD LWF +Y+  +   ++ V   +K K IFSKKYV +PIV W HW LLI CNFG   +S
Sbjct: 124 YLDCLWFSMYKSENHNIRSSVFDSVKTKQIFSKKYVFLPIVYWSHWTLLIFCNFGEDLDS 183

Query: 190 KTRTPCMLLLDSLEMSN-PWRFEPDIRKYV 218
                CML LDSL+ ++   R EPDIRK+V
Sbjct: 184 D--KTCMLFLDSLQTTDSSQRLEPDIRKFV 211

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136047|ref|XP_002322226.1| predicted protein [Populus trichocarpa] gi|222869222|gb|EEF06353.1| predicted protein [Populus trichocarpa]

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/101 (68%), Positives = 79/101 (78%)

Query: 118 LWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNL 177
           +WR+FSEDK+   TY D LWF+LY K S K KVLTWIK+K IFSKKYVLVPIV W HW+L
Sbjct: 1   MWRNFSEDKRTFITYFDCLWFNLYTKASFKGKVLTWIKKKQIFSKKYVLVPIVHWSHWSL 60

Query: 178 LILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYV 218
           LI C+ G S +SK RTPCMLLLDSLE + P   EPDIRK+V
Sbjct: 61  LIFCHLGESLQSKLRTPCMLLLDSLEKAGPRCLEPDIRKFV 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547470|ref|XP_002514792.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223545843|gb|EEF47346.1| sentrin/sumo-specific protease, putative [Ricinus communis]

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 84/119 (70%), Gaps = 2/119 (1%)

Query: 104 NKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKK 163
            KLD+  F++   NLW +F EDK+  FTY D LWF +Y   SSK  +LTWIK K IFSKK
Sbjct: 99  EKLDTLAFDNHFKNLWSNFPEDKRMLFTYFDCLWFSVYMTASSKENMLTWIKDKDIFSKK 158

Query: 164 YVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYF 222
           YVLVPIV W HW+LLILCNF    +S+  +PCMLLLDSL+M+ P R EP IRK+V   F
Sbjct: 159 YVLVPIVYWSHWSLLILCNFDS--QSENGSPCMLLLDSLQMAGPRRLEPAIRKFVLDIF 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2101130	298	AT3G48480 [Arabidopsis thalian	0.767	0.620	0.409	2e-33
DICTYBASE|DDB_G0293508	1035	DDB_G0293508 [Dictyostelium di	0.390	0.090	0.308	2.5e-07

TAIR|locus:2101130 AT3G48480 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 86/210 (40%), Positives = 118/210 (56%)

Query:    13 IDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQK-IRNFELTAPCFLGTFXXXXX 71
             + I+    ED  +L  HRTCW H  A L     K  + K +  F+LTAPCF         
Sbjct:    23 VTIIDDCEEDE-YLH-HRTCWKHIAAALSKCGSKPKRTKELEIFKLTAPCFYDECTR--- 77

Query:    72 XXXXXXXXNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFT 131
                          +G++   +KCK + +K +K KL+S  F   L+++WR FS++KK  F 
Sbjct:    78 -------------RGRSERRIKCKYLDSKLRK-KLNSKAFVGYLEDVWRGFSDEKKNSFV 123

Query:   132 YLDSLWFDLYRKPSS--KAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFES 189
             YLD LWF +Y+  +   ++ V   +K K IFSKKYV +PIV W HW LLI CNFG   +S
Sbjct:   124 YLDCLWFSMYKSENHNIRSSVFDSVKTKQIFSKKYVFLPIVYWSHWTLLIFCNFGEDLDS 183

Query:   190 KTRTPCMLLLDSLEMSNP-WRFEPDIRKYV 218
               +T CML LDSL+ ++   R EPDIRK+V
Sbjct:   184 D-KT-CMLFLDSLQTTDSSQRLEPDIRKFV 211

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

DICTYBASE|DDB_G0293508 DDB_G0293508 [Dictyostelium discoideum (taxid:44689)]

 Score = 145 (56.1 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 33/107 (30%), Positives = 60/107 (56%)

Query:   123 SEDKKAGFTYLDSLWFDLYRKPSSK----AKVLTWIKRKHIFSKKYVLVPIVCWRHWNLL 178
             +E+++  + + +S ++ L+    ++      V  W  ++ +FSK ++ VPI    HW+L+
Sbjct:   474 TEEQRKKYFFFNSFFYKLFTNEDNENLAYEDVKKWTGKEDLFSKDFIFVPINYAAHWSLM 533

Query:   179 ILCNFG-----GSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTL 220
             I+C  G     G +E   ++PCM+ LDSL    P +F   +RKY+TL
Sbjct:   534 IICYPGADKVVGEYE---KSPCMIYLDSL-FKRPGQFANKLRKYLTL 576


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      241       228   0.00081  113 3  11 22  0.48    32
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  208 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.12u 0.19s 20.31t   Elapsed:  00:00:01
  Total cpu time:  20.12u 0.19s 20.31t   Elapsed:  00:00:01
  Start:  Fri May 10 04:01:49 2013   End:  Fri May 10 04:01:50 2013

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_X1606 hypothetical protein (298 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	100.0
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	100.0
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	100.0
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.87
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	99.6
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	99.49
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	88.32

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8e-40  Score=316.25  Aligned_cols=125  Identities=22%  Similarity=0.278  Sum_probs=113.8

Q ss_pred             eeeeeccceecccCCCCChHHHHHHHHHHHhhcCcc-cCCcEEEEeccccccccCCCCccchhhhhcccCCcccceEEEe
Q 026234           90 SSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSED-KKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVP  168 (241)
Q Consensus        90 ~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~-~~~~~h~FnSFFy~kL~~~~~y~~VkrWTKkvDIFskdyIfVP  168 (241)
                      ++||..|+.||++++||||+||||||++|.++...+ +.+++|+||||||++|.. .||++|+||||++|||++|+||||
T Consensus       318 i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~yp~~h~FnTFFy~kL~~-~gy~~VkRWTk~v~if~~d~i~vP  396 (511)
T KOG0778|consen  318 IDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSKYPKVHAFNTFFYTKLVG-RGYAGVKRWTKKVDIFDKDIIFVP  396 (511)
T ss_pred             ccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCCCceEEEEechhhhhhhh-cchHHHHhHhhccCccccceeEee
Confidence            999999999999999999999999999999997654 378999999999999995 589999999999999999999999


Q ss_pred             ccCCCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhh
Q 026234          169 IVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGV  225 (241)
Q Consensus       169 In~~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~  225 (241)
                      ||..+|||||||.         .+.++|.|||||+|..++.+ +.|.+||++|+.++
T Consensus       397 IH~~vHW~l~vid---------~r~k~i~y~DS~~~~~nr~~-~aL~~Yl~~E~~~k  443 (511)
T KOG0778|consen  397 IHLGVHWCLAVID---------LREKTIEYYDSLGGGPNRIC-DALAKYLQDESRDK  443 (511)
T ss_pred             eecCceEEEEEEE---------cccceEEEeeccCCCCcchH-HHHHHHHHHHHhhh
Confidence            9999999999995         45699999999998644544 89999999999544

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-36  Score=290.67  Aligned_cols=131  Identities=21%  Similarity=0.317  Sum_probs=119.3

Q ss_pred             cccceeeeeccceecccCCCCChHHHHHHHHHHHhhcC-cccCCcEEEEeccccccccCCCCccchhhhhcccCCcccce
Q 026234           86 GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFS-EDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKY  164 (241)
Q Consensus        86 gk~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~-~~~~~~~h~FnSFFy~kL~~~~~y~~VkrWTKkvDIFskdy  164 (241)
                      ++..+.||-+|+.+|++++||||+||||||+||.++.. ..+++++|+||||||++|.. .||++|+|||+++|||++||
T Consensus       377 ~~~~i~IT~~D~~~L~~~~wLNDtIIdFy~k~ls~~sk~~s~~~~vh~FnTFFYT~Lsr-rGy~gVrrW~kk~dif~~k~  455 (578)
T COG5160         377 DRSSIEITNQDFKRLRNGDWLNDTIIDFYMKLLSKISKNTSKREQVHLFNTFFYTKLSR-RGYSGVRRWTKKTDIFSKKY  455 (578)
T ss_pred             CcCcceeehHhhhhhccccchhhHHHHHHHHHHHHhccCcccccceEEeehhhHHHHHH-HHhHHHHHHHhccCccccce
Confidence            88999999999999999999999999999999966543 34688999999999999984 58999999999999999999


Q ss_pred             EEEeccCCCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhhhh
Q 026234          165 VLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVFV  227 (241)
Q Consensus       165 IfVPIn~~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~~~  227 (241)
                      ||||||..+||+|||||++.         +.|+|+|||++. +..+.+.||.||.+|||..-.
T Consensus       456 I~iPIni~~HW~l~II~~~~---------~~i~~~DSLan~-~~~v~~~L~~Y~ldE~k~~~~  508 (578)
T COG5160         456 IFIPINISYHWFLAIIDNPK---------KNILYFDSLANT-HDPVLEFLRSYLLDEYKIQHD  508 (578)
T ss_pred             EEEEecccceEEEEEeecCc---------ceeEEecccccC-cHHHHHHHHHHHHHHHhcccC
Confidence            99999999999999999775         899999999996 577888999999999987543

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=100.00  E-value=1.2e-33  Score=272.03  Aligned_cols=135  Identities=16%  Similarity=0.198  Sum_probs=117.5

Q ss_pred             eeee-cccceeeeeccceecccCCCCChHHHHHHHHHHHhhcC--cccCCcEEEEeccccccccCC---CCccchhhhhc
Q 026234           82 SLIK-GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFS--EDKKAGFTYLDSLWFDLYRKP---SSKAKVLTWIK  155 (241)
Q Consensus        82 ~l~y-gk~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~--~~~~~~~h~FnSFFy~kL~~~---~~y~~VkrWTK  155 (241)
                      +++. ++..++||.+|+.+|.|++||||+||||||++|.++..  +...+++|+||||||++|.+.   .+|++|+|||+
T Consensus       279 vlvs~~~~~i~IT~~DL~~L~Pg~WLNDeVINfYm~LL~er~~~~p~~~~k~h~FNTFFytkL~~~~~~ygY~~VrRWTk  358 (490)
T PLN03189        279 VLVTHENSNIDITGEILRCLKPGAWLNDEVINLYLELLKEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTT  358 (490)
T ss_pred             eeeecCCCceEEEHHHhhccCCCCccCHHHHHHHHHHHHHhhhcCcccccceEEEehHHHHHHhhcCCcCChHHHHHHhh
Confidence            3444 67789999999999999999999999999999988643  234568999999999999764   27999999997


Q ss_pred             c----cCCcccceEEEeccCCCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhhh
Q 026234          156 R----KHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVF  226 (241)
Q Consensus       156 k----vDIFskdyIfVPIn~~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~~  226 (241)
                      +    ++||++|+||||||.+.||+|+||+++.         ++|+|||||++.++. +.+.|++||.+|++++.
T Consensus       359 ~kKigv~Lfs~D~IFIPIh~n~HWsLaVId~k~---------k~I~yyDSLgg~~~~-vL~~L~rYL~~E~kdK~  423 (490)
T PLN03189        359 QKKLGYHLIDCDKIFVPIHQEIHWTLAVINKKD---------QKFQYLDSLKGRDPK-ILDALAKYYVDEVKDKS  423 (490)
T ss_pred             hcccccccccCceEEeeeecCCeeEEEEEEcCC---------CeEEEEeCCCCCCHH-HHHHHHHHHHHHHhhhc
Confidence            5    4799999999999999999999999875         799999999998665 55789999999998765

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.87  E-value=1.3e-22  Score=170.89  Aligned_cols=112  Identities=21%  Similarity=0.389  Sum_probs=90.7

Q ss_pred             CCCChHHHHHHHHHHHhhc--CcccCCcEEEEeccccccccCC-------------------CCccchhhhhccc---CC
Q 026234          104 NKLDSGKFEHLLDNLWRSF--SEDKKAGFTYLDSLWFDLYRKP-------------------SSKAKVLTWIKRK---HI  159 (241)
Q Consensus       104 ~wLND~IInFYl~~L~~~~--~~~~~~~~h~FnSFFy~kL~~~-------------------~~y~~VkrWTKkv---DI  159 (241)
                      +||||+||||||++|.++.  .+...+++++|||+|++++...                   ..+.++.+|++..   ++
T Consensus         1 ~wLnd~iId~y~~~l~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (216)
T PF02902_consen    1 EWLNDSIIDFYLEYLRHRLESENKNSKRVHFFSSFFYQKLTECFKQFKKDKERSKFKWNESKDFYNGVQRWFRKKNKKNL   80 (216)
T ss_dssp             --EEHHHHHHHHHHHHHHTCCTHHTSTTEEEE-THHHHHHH----HHHCCH--S-----HHHHCHHHCGGGGTTCCTSTG
T ss_pred             CcCCHHHHHHHHHHHHHhhccCccCCCcEEEECceeeeccccccccccccccccccchhhhhHhhhhhhhhhhccccccc
Confidence            6999999999999998654  3456789999999999988711                   1468999999887   99


Q ss_pred             cccceEEEeccC-CCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCC----CChHHHHHHHHHHHHhh
Q 026234          160 FSKKYVLVPIVC-WRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNP----WRFEPDIRKYVTLYFFG  224 (241)
Q Consensus       160 FskdyIfVPIn~-~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~----~~l~~~IR~YL~~E~k~  224 (241)
                      |++|+||+|||. +.||+|+||+.+.         .+|.+||||++...    ......++.||..++..
T Consensus        81 ~~~~~i~iPin~~~~HW~l~vi~~~~---------~~i~~~DSl~~~~~~~~~~~~~~~~~~~l~~~~~~  141 (216)
T PF02902_consen   81 FDKDYIFIPININNNHWVLLVIDLPK---------KRIYVYDSLGSSNNDKRYKRVIENIIPFLKREYKK  141 (216)
T ss_dssp             GGSSEEEEEEEETTTEEEEEEEETTT---------TEEEEE-TTSTSSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCEEEEEEechhhccceeEEcccc---------cEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence            999999999999 8999999999876         68999999999754    13446789999988854

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=2.3e-16  Score=156.73  Aligned_cols=130  Identities=19%  Similarity=0.352  Sum_probs=103.1

Q ss_pred             eeeeccceecccCCCCChHHHHHHHHHHHhh-cC-cccCCcEEEEeccccccccCC-----------CCccchhhhhccc
Q 026234           91 SVKCKDMITKRKKNKLDSGKFEHLLDNLWRS-FS-EDKKAGFTYLDSLWFDLYRKP-----------SSKAKVLTWIKRK  157 (241)
Q Consensus        91 ~v~~~D~i~l~~~~wLND~IInFYl~~L~~~-~~-~~~~~~~h~FnSFFy~kL~~~-----------~~y~~VkrWTKkv  157 (241)
                      +|+..|+..+..+++|||.|+|||++++... +. .+..+..|+|++|||.++...           ....++++|++.+
T Consensus       354 ~v~~~Dl~cl~~~e~L~d~i~dfyl~~i~~~~l~~~~~s~~~h~f~tffyk~l~~~~~~~~~d~~~~~~~~~~~~~~~~~  433 (595)
T KOG0779|consen  354 QVNNNDLVCLEEGEFLNDTIKDFYLEYIRQYLLSQKELSNDRHIFSTFFYKRLCRKLRQKSNDQIQDNRAVRLRTWTRHF  433 (595)
T ss_pred             ceeccchhhccccchhhhhhhhhhhHHHHHhhhcccccCcchhhhhhHHHhhhhhhhhhhhhhhhhccccCceeeeeecc
Confidence            8999999999999999999999999999754 33 556788999999999987653           1568899999999


Q ss_pred             CCcccceEEEeccCCCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHh
Q 026234          158 HIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFF  223 (241)
Q Consensus       158 DIFskdyIfVPIn~~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k  223 (241)
                      |+|.++||++|+|+..||.|+|||+|+...++...   .+..++++......+...+..++..+|.
T Consensus       434 d~~~k~yi~~P~~E~~hw~laiic~p~~e~es~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (595)
T KOG0779|consen  434 DLFNKDYVFVPTHERFHWKLAIICNPDLETETPRP---RLELLILKLSADFPIVENILDFMKVASI  496 (595)
T ss_pred             ccccceeEEecCchHhhhhccccccCccccCcccc---chhhhhhccccccchhhhhhhhhhhccc
Confidence            99999999999999999999999999876544322   3444555544444445566667666663

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=99.49  E-value=4e-14  Score=125.29  Aligned_cols=129  Identities=16%  Similarity=0.270  Sum_probs=93.8

Q ss_pred             eeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEec---cccccccCCCCccchhhhhcccCCcccceEE
Q 026234           90 SSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDS---LWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL  166 (241)
Q Consensus        90 ~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnS---FFy~kL~~~~~y~~VkrWTKkvDIFskdyIf  166 (241)
                      +.++..|+..|++..||||.+|+||.+||..+-... .+..|+++.   ||..   ....-+.+..-....|+++|+|||
T Consensus        17 v~Lr~sDVdlL~~p~wlnD~~I~F~~e~l~~~~~~s-~~~~~ll~P~~t~~l~---~~~~~~e~~~~~~pl~l~~k~~if   92 (223)
T KOG3246|consen   17 VSLRQSDVDLLQPPEWLNDRLIDFYYEYLEHRRSRS-EPDLHLLRPSLTFFLR---HAPNPEEIAMVLDPLDLNDKDFIF   92 (223)
T ss_pred             hhhhhhhhhhcCCCchhhhhHHHHHHHHHHHhhccc-CcchhccCHHHHHHHH---hCCCcHHHHHhcChhhcCCCceEE
Confidence            445667888999999999999999999997653222 122466553   3332   222345666666778999999999


Q ss_pred             EeccCC---------CceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCC---ChHHHHHHHHHHHHhhhhhcccc
Q 026234          167 VPIVCW---------RHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPW---RFEPDIRKYVTLYFFGVFVCLCT  231 (241)
Q Consensus       167 VPIn~~---------~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~---~l~~~IR~YL~~E~k~~~~~~~~  231 (241)
                      +|||.+         .||+|.|+.-|.         -...||||+++.+..   .+.++++.+|..+....-+|.|.
T Consensus        93 lpiNDn~~~~~~~GGsHWSLLV~sr~~---------~~f~hyDS~~n~nt~~a~~l~~kl~~ll~~~~~~~~~~~~~  160 (223)
T KOG3246|consen   93 LPINDNSNVTRASGGSHWSLLVFSRPD---------GKFYHYDSLSNGNTKDAKSLMKKLRALLKKKFAKRVECKCL  160 (223)
T ss_pred             EEecCCCcccccCCCcceEEEEEEeeC---------CcEEEeecccCCCcHHHHHHHHHHHHHHhhhhhhcccccCh
Confidence            999974         399999997765         569999999997543   45668898888876554366654

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=88.32  E-value=0.1  Score=52.99  Aligned_cols=138  Identities=13%  Similarity=0.120  Sum_probs=94.3

Q ss_pred             cccceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEeccccccccCC-----------CCccchhhhh
Q 026234           86 GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKP-----------SSKAKVLTWI  154 (241)
Q Consensus        86 gk~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnSFFy~kL~~~-----------~~y~~VkrWT  154 (241)
                      ++...++... .+..-+..+-|++...+|..++ .+.........++|++.+|.++...           -.+..|.+|+
T Consensus        97 ~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~  174 (595)
T KOG0779|consen   97 QKPHAVVPKK-IISVSELRNTNLTEGTFYSDYL-NRIKNIFESVRKFFNQVSYPKFMPNVTSFMPSPLEKCQLQRVFTWT  174 (595)
T ss_pred             cCCccccccc-cccchhccccCCcccceecccc-cccccccchhcchhhhcccccccchhhcccCCccccccccccccee
Confidence            4444444433 3455567788999999999988 6655555667899999999876542           1567777788


Q ss_pred             --cccCCcccceEEEeccCCCceeEEEEecCCCCCCC---CCCCceEEEEeCCCC--C--CCCChHHHHHHHHHHHHhhh
Q 026234          155 --KRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFES---KTRTPCMLLLDSLEM--S--NPWRFEPDIRKYVTLYFFGV  225 (241)
Q Consensus       155 --KkvDIFskdyIfVPIn~~~HWsL~IIc~p~~~~~~---~~~~p~Il~lDSL~~--~--~~~~l~~~IR~YL~~E~k~~  225 (241)
                        ....+|.+++|.++.++..||.+..++.+.....+   +....++..+++-.+  .  ........+..++..+|+..
T Consensus       175 i~i~~~~~~~~fi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~s~~~~~~  254 (595)
T KOG0779|consen  175 INITRKLFKKLFIKIFKNEPFHFKAVKFLLPSALTKSDVCDIADLEVIFLNSRKDSHSLVISSINSPNIKTFFSKEVKSR  254 (595)
T ss_pred             eeeeecchhhhcccCcccCchhhhhhhcccchhccchhhhhhhcccccchhcccchhhhhhcccccccchhhhccccccC
Confidence              66789999999999999999999999999765432   233556666666555  1  11122234566666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	9e-07
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	1e-05
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 47.5 bits (112), Expect = 9e-07
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 15/130 (11%)

Query: 98  ITKRKKNKLDSGKF--EHLLD---NLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLT 152
           IT++    L+   +  + +++   N+    S++K     +  + +F    K +    V  
Sbjct: 46  ITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKR 105

Query: 153 WIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEP 212
           W K+  +FS   +LVPI    HW L ++               +   DS+   N      
Sbjct: 106 WTKKVDVFSVDILLVPIHLGVHWCLAVVDFR---------KKNITYYDSMGGINNEACRI 156

Query: 213 DIRKYVTLYF 222
            + +Y+    
Sbjct: 157 -LLQYLKQES 165

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 85  KGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWF------ 138
             K    V  +D+    +   L+    +  L  L    + D+    +++ S +F      
Sbjct: 28  PTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTR 87

Query: 139 ----------DLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNF 183
                     +L        +V TW +  +IF+K Y+ VP+    HW L ++C  
Sbjct: 88  KENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFP 142

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 21/142 (14%), Positives = 50/142 (35%), Gaps = 11/142 (7%)

Query: 77  KCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSL 136
                 ++       +   D+ T +  + L+       ++ L     +          + 
Sbjct: 19  HGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTF 78

Query: 137 WFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCM 196
           ++   +    +  V  W K  ++F ++ +LVPI    HW+L+++              C+
Sbjct: 79  FYPKLKSGGYQ-AVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLR---------KKCL 128

Query: 197 LLLDSLEMSNPWRFEPDIRKYV 218
             LDS+        E  + +Y+
Sbjct: 129 KYLDSMGQKGHRICEI-LLQYL 149

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 37/181 (20%), Positives = 58/181 (32%), Gaps = 57/181 (31%)

Query: 69  RR--RSKRRVKC-------KNTSLIKGKNSSSVKCKDMITKRKK---NKLDSGKFEHL-L 115
           RR  +SK    C       +N       N   + CK ++T R K   + L +    H+ L
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 116 DNLWRSFSEDKKAGF--TYLDSLWFDLYRKPSSKAK----VLTWI---KRKHIFSKKYVL 166
           D+   + + D+       YLD    DL   P          L+ I    R  + +     
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDN-- 346

Query: 167 VPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYF-FGV 225
                W+H N           +  T      +  SL +  P     + RK    +    V
Sbjct: 347 -----WKHVN----------CDKLTTI----IESSLNVLEP----AEYRKM---FDRLSV 380

Query: 226 F 226
           F
Sbjct: 381 F 381

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	100.0
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	99.98
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	99.97
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.97
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.96
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.91

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=100.00  E-value=5.4e-42  Score=316.16  Aligned_cols=146  Identities=21%  Similarity=0.374  Sum_probs=124.9

Q ss_pred             ceeee----cccceeeeeccceecccCCCCChHHHHHHHHHHH-hhcCcccCCcEEEEeccccccccCCC----------
Q 026234           81 TSLIK----GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLW-RSFSEDKKAGFTYLDSLWFDLYRKPS----------  145 (241)
Q Consensus        81 ~~l~y----gk~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~-~~~~~~~~~~~h~FnSFFy~kL~~~~----------  145 (241)
                      ..++|    +++.++|+.+|+.+|++++||||+||||||+||. ++..++..+++|+||||||++|....          
T Consensus        20 ~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~   99 (323)
T 3eay_A           20 KLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNL   99 (323)
T ss_dssp             EEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCS
T ss_pred             eeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccccc
Confidence            44666    5778999999999999999999999999999996 56655566789999999999997531          


Q ss_pred             -----CccchhhhhcccCCcccceEEEeccCCCceeEEEEecCCCCC--------------------------C------
Q 026234          146 -----SKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSF--------------------------E------  188 (241)
Q Consensus       146 -----~y~~VkrWTKkvDIFskdyIfVPIn~~~HWsL~IIc~p~~~~--------------------------~------  188 (241)
                           +|++|+|||+++|||++||||||||++.||+|||||+|+...                          +      
T Consensus       100 s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  179 (323)
T 3eay_A          100 SMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTT  179 (323)
T ss_dssp             CHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC-----------------------------
T ss_pred             hhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccccc
Confidence                 489999999999999999999999999999999999997520                          0      


Q ss_pred             ---------------------CCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhhh
Q 026234          189 ---------------------SKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVF  226 (241)
Q Consensus       189 ---------------------~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~~  226 (241)
                                           ...+.|||+|||||++++...+.+.||+||++||+++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~  238 (323)
T 3eay_A          180 STLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKL  238 (323)
T ss_dssp             --------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhc
Confidence                                 01257899999999997556778899999999999874

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=99.98  E-value=5.8e-33  Score=243.03  Aligned_cols=128  Identities=19%  Similarity=0.208  Sum_probs=114.7

Q ss_pred             cceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEeccccccccCCCCccchhhhhcccCCcccceEEE
Q 026234           88 NSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLV  167 (241)
Q Consensus        88 ~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnSFFy~kL~~~~~y~~VkrWTKkvDIFskdyIfV  167 (241)
                      ..++|+.+|+.+|.+++||||+|||||+++|.++...+..+++|+||||||++|.. .+|++|+|||+++|||++|+|||
T Consensus        42 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~sff~~~l~~-~~~~~v~~w~~~~~l~~~~~i~i  120 (238)
T 2xph_A           42 FRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKT-AGYQAVKRWTKKVDVFSVDILLV  120 (238)
T ss_dssp             TTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTSTTSCCEEECCTTTTHHHHT-TCHHHHTTTTTTCCGGGSSEEEE
T ss_pred             CCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceeeeecHHHHHhhh-cccHHHHHHhccCCcccCCEEEE
Confidence            45789999999999999999999999999998876555577899999999999985 47999999999999999999999


Q ss_pred             eccCCCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhhh
Q 026234          168 PIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVF  226 (241)
Q Consensus       168 PIn~~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~~  226 (241)
                      |||.+.||+|+||+.+.         ++|.|||||++.+.. ....|++||..||+.+.
T Consensus       121 Pin~~~HW~L~vi~~~~---------~~i~~~DSl~~~~~~-~~~~l~~~L~~e~~~k~  169 (238)
T 2xph_A          121 PIHLGVHWCLAVVDFRK---------KNITYYDSMGGINNE-ACRILLQYLKQESIDKK  169 (238)
T ss_dssp             EEEETTEEEEEEEETTT---------TEEEEECTTCCCCHH-HHHHHHHHHHHHHHHHH
T ss_pred             cccCCCceEEEEEEccc---------ceEEEeecccCCCHH-HHHHHHHHHHHHHHHhc
Confidence            99999999999998765         899999999997544 45689999999998763

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=99.97  E-value=1.1e-32  Score=239.25  Aligned_cols=129  Identities=16%  Similarity=0.245  Sum_probs=115.2

Q ss_pred             ccceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEeccccccccCCCCccchhhhhcccCCcccceEE
Q 026234           87 KNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL  166 (241)
Q Consensus        87 k~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnSFFy~kL~~~~~y~~VkrWTKkvDIFskdyIf  166 (241)
                      ...++|+..|+.+|.+++||||+|||||+++|.++..++..+++|+||||||++|.+. +|++|+|||+++|||++|+||
T Consensus        29 ~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s~f~~~l~~~-~~~~v~~w~~~~~l~~~~~i~  107 (226)
T 1th0_A           29 AFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSG-GYQAVKRWTKGVNLFEQEIIL  107 (226)
T ss_dssp             ETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHHH-TGGGTGGGGTTCCGGGSSEEE
T ss_pred             cCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhccCCcEEEEeHHHHHHhhhc-ccHHHHHHhhcCCcccCCEEE
Confidence            3568899999999999999999999999999987765555678999999999998753 799999999999999999999


Q ss_pred             EeccCCCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhhh
Q 026234          167 VPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVF  226 (241)
Q Consensus       167 VPIn~~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~~  226 (241)
                      ||||.+.||+|+||+.+.         ++|.|||||++.+ ..+.+.|++||..|++.+.
T Consensus       108 iPin~~~HW~l~vi~~~~---------~~i~~~DSl~~~~-~~~~~~l~~~l~~e~~~k~  157 (226)
T 1th0_A          108 VPIHRKVHWSLVVIDLRK---------KCLKYLDSMGQKG-HRICEILLQYLQDESKTKR  157 (226)
T ss_dssp             EEEEETTEEEEEEEETTT---------TEEEEECTTCCCC-HHHHHHHHHHHHHHHHHHT
T ss_pred             EeEEeCcEEEEEEEEcCC---------CceEEEcCCCCCc-hHHHHHHHHHHHHHHHHhc
Confidence            999999999999998654         8999999999975 4466789999999998764

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.97  E-value=4.4e-31  Score=228.78  Aligned_cols=126  Identities=18%  Similarity=0.244  Sum_probs=109.8

Q ss_pred             cccceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEeccccccccCCCCccchhhhhc--ccCCcccc
Q 026234           86 GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIK--RKHIFSKK  163 (241)
Q Consensus        86 gk~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnSFFy~kL~~~~~y~~VkrWTK--kvDIFskd  163 (241)
                      ++..++|+..|+.+|.+++||||+||||||++|.+..     +++|+||||||++|.+ .+|++|+|||+  ++|||++|
T Consensus        29 ~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-----~~~~~f~s~f~~~l~~-~~~~~v~rw~~~~~~~~~~~~  102 (221)
T 1euv_A           29 NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-----PNTVAFNSFFYTNLSE-RGYQGVRRWMKRKKTQIDKLD  102 (221)
T ss_dssp             EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-----TTEEECCTHHHHHHHH-HTGGGTTTTTGGGTSCGGGCS
T ss_pred             cCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-----CCeEEEEcHHHHHhhh-hccHHHHHHHHhccCCcccCC
Confidence            5567899999999999999999999999999997642     5799999999999875 47999999998  57999999


Q ss_pred             eEEEeccCC-CceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCC---ChHHHHHHHHHHHHhhhh
Q 026234          164 YVLVPIVCW-RHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPW---RFEPDIRKYVTLYFFGVF  226 (241)
Q Consensus       164 yIfVPIn~~-~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~---~l~~~IR~YL~~E~k~~~  226 (241)
                      +||||||.+ .||+|+||+.+.         ++|.+||||++....   .+.+.|++||.+|++.+.
T Consensus       103 ~i~iPin~~~~HW~l~vi~~~~---------~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~~~~~  160 (221)
T 1euv_A          103 KIFTPINLNQSHWALGIIDLKK---------KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTI  160 (221)
T ss_dssp             EEEEEEEETTTEEEEEEEETTT---------TEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSS
T ss_pred             EEEEEEEcCCCeEEEEEEEcCC---------CEEEEEecCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence            999999985 899999999875         899999999965322   356789999999998654

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.96  E-value=2.9e-30  Score=221.51  Aligned_cols=129  Identities=14%  Similarity=0.150  Sum_probs=109.1

Q ss_pred             ceeeecccceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEe---ccccccccCCCCccchhhhhccc
Q 026234           81 TSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLD---SLWFDLYRKPSSKAKVLTWIKRK  157 (241)
Q Consensus        81 ~~l~ygk~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~Fn---SFFy~kL~~~~~y~~VkrWTKkv  157 (241)
                      +++.|+  .++|+.+|+.+|.+++||||+||||||++|.++..++..+++|+||   ||||..+.   .|++|++||+++
T Consensus         4 ~~l~~~--~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~---~~~~v~~~~~~~   78 (212)
T 2bkr_A            4 VVLSYM--DSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTS---NPAEIAMFLEPL   78 (212)
T ss_dssp             EEEEET--TEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCC---CHHHHHHHHGGG
T ss_pred             EEEEEC--CEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCC---CHHHHHHHhccc
Confidence            444454  4789999999999999999999999999999887555578899999   99996654   478999999999


Q ss_pred             CCcccceEEEeccC-------CCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCC---hHHHHHHHHHHHHh
Q 026234          158 HIFSKKYVLVPIVC-------WRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWR---FEPDIRKYVTLYFF  223 (241)
Q Consensus       158 DIFskdyIfVPIn~-------~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~---l~~~IR~YL~~E~k  223 (241)
                      |+|++|+||||||.       +.||+|+||+.+.         ++|.|||||++.+...   +.+.|+.||..|++
T Consensus        79 ~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~---------~~i~~~DSl~~~n~~~~~~l~~~l~~~l~~~~~  145 (212)
T 2bkr_A           79 DLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDK---------NSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGD  145 (212)
T ss_dssp             TGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGG---------TEEEEECSSTTTTHHHHHHHHHHHHHHHSCTTC
T ss_pred             ccccCCEEEEEEecCCCCCCCCCCeEEEEEEecC---------CeEEEEeCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence            99999999999995       7999999999876         7999999999875432   45567777777665

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.91  E-value=3.7e-25  Score=188.03  Aligned_cols=112  Identities=18%  Similarity=0.254  Sum_probs=85.2

Q ss_pred             CCCCChHHHHHHHHHHHhhcCcccC-CcEEEEeccccccccCC--CCccchhhhhcccCCcccceEEEeccC-CCceeEE
Q 026234          103 KNKLDSGKFEHLLDNLWRSFSEDKK-AGFTYLDSLWFDLYRKP--SSKAKVLTWIKRKHIFSKKYVLVPIVC-WRHWNLL  178 (241)
Q Consensus       103 ~~wLND~IInFYl~~L~~~~~~~~~-~~~h~FnSFFy~kL~~~--~~y~~VkrWTKkvDIFskdyIfVPIn~-~~HWsL~  178 (241)
                      ++||||+||||||+||.++..++.. .++|+||+++...+...  .+|.+|.+|++..|+  +|+||||||. +.||+|+
T Consensus         2 ~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~i~iPin~~~~HWsLl   79 (186)
T 2oix_A            2 TSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDI--PPIVFLPINQPNAHWSLL   79 (186)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTS--CSEEEEEEEETTTEEEEE
T ss_pred             CCCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhCCHHHHHHHHHHcccccc--cCEEEEEEeCCCCccEEE
Confidence            6899999999999999988644333 45999996544433322  256788888887776  9999999998 7999999


Q ss_pred             EEecCCCCCCCCCCCceEEEEeCCCCCCCC--ChHHHHHHHHHHHH
Q 026234          179 ILCNFGGSFESKTRTPCMLLLDSLEMSNPW--RFEPDIRKYVTLYF  222 (241)
Q Consensus       179 IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~--~l~~~IR~YL~~E~  222 (241)
                      ||+.+++.      -|+|.|||||++.++.  .+.+.|++||..+.
T Consensus        80 vi~~~~~~------~~~~~~~DSl~~~~~~~~~l~~~l~~~l~~~~  119 (186)
T 2oix_A           80 VVDRRNKD------AVAAYHYDSMAQKDPQQRYLADMAAYHLGLDY  119 (186)
T ss_dssp             EEECSSTT------SCEEEEECCCSSCCHHHHHHHHHHHHHTTCCG
T ss_pred             EEECCCCe------eeeeEEEcCCCCCCHHHHHHHHHHHHHhCCCc
Confidence            99998743      3778999999996432  35556677766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	1e-07
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	7e-06
d2bkra1	212	d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN	5e-04

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 83  LIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYR 142
           ++      ++  KD+ T    N L+       ++ L     E         ++ +F    
Sbjct: 25  VLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKL- 83

Query: 143 KPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSL 202
           K +    V  W K+  +FS   +LVPI    HW L ++           R   +   DS+
Sbjct: 84  KTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDF---------RKKNITYYDSM 134

Query: 203 EMSNPWRFEPDIRKYV 218
              N       ++   
Sbjct: 135 GGINNEACRILLQYLK 150

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 7e-06
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 14/131 (10%)

Query: 98  ITKRKKNKLDSGKF--EHLLD---NLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLT 152
           IT+     L +  +  + +++   NL    ++ +     ++ S +F    K      V  
Sbjct: 34  ITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKR 93

Query: 153 WIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEP 212
           W K  ++F ++ +LVPI    HW+L+++              C+  LDS+        E 
Sbjct: 94  WTKGVNLFEQEIILVPIHRKVHWSLVVIDLR---------KKCLKYLDSMGQKGHRICEI 144

Query: 213 DIRKYVTLYFF 223
            ++        
Sbjct: 145 LLQYLQDESKT 155

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 2/99 (2%)

Query: 118 LWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNL 177
              S   D     +++        +  S+ A++  +++   + +K+ V + I    +   
Sbjct: 39  FANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAA 98

Query: 178 LILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRK 216
                                 DS   SN    +    K
Sbjct: 99  GGSHWS--LLVYLQDKNSFFHYDSHSRSNSVHAKQVAEK 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.95
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.93
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.93
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.91

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.5e-28  Score=206.24  Aligned_cols=129  Identities=16%  Similarity=0.228  Sum_probs=115.6

Q ss_pred             ccceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEeccccccccCCCCccchhhhhcccCCcccceEE
Q 026234           87 KNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL  166 (241)
Q Consensus        87 k~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnSFFy~kL~~~~~y~~VkrWTKkvDIFskdyIf  166 (241)
                      +..++|+.+|+.+|.+++||||+|||||+++|.++..+...+++++|||||++++... +|.++++|+++.++|++++||
T Consensus        29 ~~~~~i~~~Dl~~L~~~~WLnD~iI~~y~~~l~~~~~~~~~~~~~~~~~~f~~~l~~~-~~~~~~~~~~~~~l~~~~~i~  107 (226)
T d1th0a_          29 AFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSG-GYQAVKRWTKGVNLFEQEIIL  107 (226)
T ss_dssp             ETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHHH-TGGGTGGGGTTCCGGGSSEEE
T ss_pred             cCCceeEHHHHHhcCCCcccccHHHHHHHHHHHHhhhhccCCceEEecHHHHHHHhhc-cHHHHHHHHhccCcccCCEEE
Confidence            4578999999999999999999999999999998876666788999999999998753 799999999999999999999


Q ss_pred             EeccCCCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhhh
Q 026234          167 VPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVF  226 (241)
Q Consensus       167 VPIn~~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~~  226 (241)
                      ||||.+.||+|++|+.+.         ++|.+||||++.+.. ....++.||.+|++.+.
T Consensus       108 iPin~~~HW~L~vi~~~~---------~~i~~~DSl~~~~~~-~~~~i~~~l~~~~~~~~  157 (226)
T d1th0a_         108 VPIHRKVHWSLVVIDLRK---------KCLKYLDSMGQKGHR-ICEILLQYLQDESKTKR  157 (226)
T ss_dssp             EEEEETTEEEEEEEETTT---------TEEEEECTTCCCCHH-HHHHHHHHHHHHHHHHT
T ss_pred             EeEEcCCceEEEEEEecc---------ceEEEeccccCCChH-HHHHHHHHHHHHHHHhh
Confidence            999999999999998765         899999999987544 45689999999998754

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.9e-27  Score=201.15  Aligned_cols=127  Identities=18%  Similarity=0.237  Sum_probs=108.7

Q ss_pred             ecccceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEeccccccccCCCCccchhhhh--cccCCccc
Q 026234           85 KGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWI--KRKHIFSK  162 (241)
Q Consensus        85 ygk~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnSFFy~kL~~~~~y~~VkrWT--KkvDIFsk  162 (241)
                      .+....+||.+|+.+|+|++||||+|||||+++|.++.     +++++||||||+++.+. +|.+|++|+  ++.++|++
T Consensus        28 ~~~~~~~it~~Dl~~L~~~~WLnD~iIn~y~~~l~~~~-----~~~~~~~s~f~~~l~~~-~~~~~~~w~~~~~~~~~~~  101 (221)
T d1euva_          28 MNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-----PNTVAFNSFFYTNLSER-GYQGVRRWMKRKKTQIDKL  101 (221)
T ss_dssp             EEETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-----TTEEECCTHHHHHHHHH-TGGGTTTTTGGGTSCGGGC
T ss_pred             eecCCcEEeHHHHhhcCCCcccCcHHHHHHHHHHHhcC-----CCeEEeccHHHHhHhhh-chHHHHHHHHhcccchhhc
Confidence            35567899999999999999999999999999997653     46899999999998754 799999999  55799999


Q ss_pred             ceEEEeccCC-CceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCC---ChHHHHHHHHHHHHhhhh
Q 026234          163 KYVLVPIVCW-RHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPW---RFEPDIRKYVTLYFFGVF  226 (241)
Q Consensus       163 dyIfVPIn~~-~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~---~l~~~IR~YL~~E~k~~~  226 (241)
                      |+||||||.+ .||+|++|+.+.         ++|.+||||++.+..   .+...|++||.+|++...
T Consensus       102 ~~i~iPin~~~~HW~l~vi~~~~---------~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~  160 (221)
T d1euva_         102 DKIFTPINLNQSHWALGIIDLKK---------KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTI  160 (221)
T ss_dssp             SEEEEEEEETTTEEEEEEEETTT---------TEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSS
T ss_pred             ceeEeeEecccceEEEEEeeccc---------cceeeeccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999975 799999998765         899999999986432   245678999999987665

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-26  Score=194.41  Aligned_cols=130  Identities=18%  Similarity=0.202  Sum_probs=114.9

Q ss_pred             cccceeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEeccccccccCCCCccchhhhhcccCCcccceE
Q 026234           86 GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYV  165 (241)
Q Consensus        86 gk~~~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnSFFy~kL~~~~~y~~VkrWTKkvDIFskdyI  165 (241)
                      ....++|+..|+.+|.+++||||+|||||+++|.++..++...++++|||+|+..+.. .+|.++++|+++.+++++++|
T Consensus        28 ~~~~~~it~~Dl~~L~~~~wLnd~iI~~y~~~l~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~I  106 (225)
T d2iy1a1          28 EAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKT-AGYQAVKRWTKKVDVFSVDIL  106 (225)
T ss_dssp             EETTEEEEHHHHHTTSTTCCCBHHHHHHHHHHHHHHTTSTTSCCEEECCTTHHHHHHH-SCGGGTGGGGTTCCGGGSSEE
T ss_pred             ecCCceeeHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhhccCceEEeccHHHhhhcc-cCHHHHHHHHhccccccCCEE
Confidence            3456899999999999999999999999999999988777788999999999987764 479999999999999999999


Q ss_pred             EEeccCCCceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhhhh
Q 026234          166 LVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFGVF  226 (241)
Q Consensus       166 fVPIn~~~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~~~  226 (241)
                      |||||.+.||+|+||+.+.         ++|.+||||++.+.. ....+.++|..|+..+.
T Consensus       107 ~iPin~~~HW~l~vi~~~~---------~~i~~~DSl~~~~~~-~~~~i~~~l~~~~~~~~  157 (225)
T d2iy1a1         107 LVPIHLGVHWCLAVVDFRK---------KNITYYDSMGGINNE-ACRILLQYLKQESIDKK  157 (225)
T ss_dssp             EEEEECSSCEEEEEEETTT---------TEEEEECTTCCCCHH-HHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCEEEEEEEecc---------ceEEEEecCCCCchH-HHHHHHHHHHHHHHHhc
Confidence            9999999999999998765         899999999997543 44578889998886654

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-25  Score=185.83  Aligned_cols=125  Identities=14%  Similarity=0.176  Sum_probs=106.3

Q ss_pred             eeeeeccceecccCCCCChHHHHHHHHHHHhhcCcccCCcEEEEeccccccccCCCCccchhhhhcccCCcccceEEEec
Q 026234           90 SSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPI  169 (241)
Q Consensus        90 ~~v~~~D~i~l~~~~wLND~IInFYl~~L~~~~~~~~~~~~h~FnSFFy~kL~~~~~y~~VkrWTKkvDIFskdyIfVPI  169 (241)
                      +.++.+|+.+|.+++||||+|||||+++|.++..+.....+++|+++++..+....++..+++|+++.++|++++|||||
T Consensus        11 ~~l~~~D~~~L~~~~WLND~iId~y~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifiPI   90 (212)
T d2bkra1          11 SLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAI   90 (212)
T ss_dssp             EEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCCCHHHHHHHHGGGTGGGCSEEEEEE
T ss_pred             eeeeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhhccccCcEEEEChHHHHHHhccccHHHHHHHHhccChhhccEEEEec
Confidence            45888899999999999999999999999877656666789999999988776656789999999999999999999999


Q ss_pred             cCC-------CceeEEEEecCCCCCCCCCCCceEEEEeCCCCCCCCChHHHHHHHHHHHHhh
Q 026234          170 VCW-------RHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKYVTLYFFG  224 (241)
Q Consensus       170 n~~-------~HWsL~IIc~p~~~~~~~~~~p~Il~lDSL~~~~~~~l~~~IR~YL~~E~k~  224 (241)
                      |.+       .||+|++|+.+.         +++.+||||++.++. ....+.++|.++.+.
T Consensus        91 n~~~~~~~~g~HW~l~vi~~~~---------~~i~~~DSl~~~~~~-~~~~~~~~l~~~~~~  142 (212)
T d2bkra1          91 NDNSNQAAGGSHWSLLVYLQDK---------NSFFHYDSHSRSNSV-HAKQVAEKLEAFLGR  142 (212)
T ss_dssp             ECCCSSSSBCCCEEEEEEEGGG---------TEEEEECSSTTTTHH-HHHHHHHHHHHHHSC
T ss_pred             ccccccccCcceeeeeeecccc---------ceEEEecCCCcCCHH-HHHHHHHHHHHHhcc
Confidence            965       699999998765         799999999987544 334677777776543