Citrus Sinensis ID: 026236

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
cHHHHHHHHccccEEEEccEEEEccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHcccccEEEcccccEEEEcccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHcc
ccHHHHHHHccEEEEEEccEEEEcccEEEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEcccccEEEEEEccccHHEHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHcc
MGVFAVFqdldfsfiemnpftlvngepypldmrgelddTAAFKNFKkwaniefplpfgrvlsstESFIHSldektsaslkftvlnpkgrIWTMVAGGGASVIYADtvgdlgyaselgnyaeysgapneEEVLQYARVVIDCatadpdgrKRALLIgggianftdVATTFNGIIRALREKESKLKAARMHIFvrrggpnyqTGLAKMRALGEelgiplevygpeatmtGICKQAIDCIMSAS
MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSldektsaslkFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIgggianftdvATTFNGIIRALREKESKLKAARMHIfvrrggpnyqTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
**VFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM***
MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLP******************TSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS**
MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query241 2.2.26 [Sep-21-2011]
Q2QZ86423 ATP-citrate synthase alph yes no 0.995 0.567 0.925 1e-132
O80526424 ATP-citrate synthase alph yes no 0.987 0.561 0.924 1e-131
Q2QNG7423 ATP-citrate synthase alph no no 0.987 0.562 0.915 1e-131
O22718423 ATP-citrate synthase alph no no 0.991 0.565 0.857 1e-123
Q9SGY2423 ATP-citrate synthase alph no no 0.991 0.565 0.861 1e-123
Q53JY8407 ATP-citrate synthase subu no no 0.925 0.547 0.834 1e-115
P53396 1101 ATP-citrate synthase OS=H yes no 0.958 0.209 0.510 4e-64
Q91V92 1091 ATP-citrate synthase OS=M yes no 0.966 0.213 0.502 4e-64
Q32PF2 1091 ATP-citrate synthase OS=B yes no 0.958 0.211 0.510 4e-64
Q2TCH3 1101 ATP-citrate synthase OS=O N/A no 0.958 0.209 0.510 5e-64
>sp|Q2QZ86|ACLA2_ORYSJ ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp. japonica GN=ACLA-2 PE=2 SV=2 Back     alignment and function desciption
 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/240 (92%), Positives = 233/240 (97%)

Query: 2   GVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVL 61
           GVFAVFQDLDFSF+EMNPFT+VNGEPYPLDMRGELDDTAAFKNFKKW NIEFPLPFGRVL
Sbjct: 184 GVFAVFQDLDFSFLEMNPFTIVNGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVL 243

Query: 62  SSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 121
           SSTE FIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE
Sbjct: 244 SSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 303

Query: 122 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 181
           YSGAPNEEEVLQYARVV+DCATADPDGRKRALLIGGGIANFTDV  TF+GIIRALREKES
Sbjct: 304 YSGAPNEEEVLQYARVVLDCATADPDGRKRALLIGGGIANFTDVGATFSGIIRALREKES 363

Query: 182 KLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS 241
           KLKAARMHI+VRRGGPNYQTGLAKMR LG ELG+P+EVYGPEATMTGICKQAI+C+M+A+
Sbjct: 364 KLKAARMHIYVRRGGPNYQTGLAKMRKLGAELGVPIEVYGPEATMTGICKQAIECVMAAA 423
ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 8
>sp|O80526|ACLA3_ARATH ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana GN=ACLA-3 PE=2 SV=1 Back     alignment and function description
>sp|Q2QNG7|ACLA3_ORYSJ ATP-citrate synthase alpha chain protein 3 OS=Oryza sativa subsp. japonica GN=ACLA-3 PE=2 SV=1 Back     alignment and function description
>sp|O22718|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana GN=ACLA-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SGY2|ACLA1_ARATH ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana GN=ACLA-1 PE=1 SV=1 Back     alignment and function description
>sp|Q53JY8|ACLA1_ORYSJ ATP-citrate synthase subunit alpha chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLA-1 PE=3 SV=2 Back     alignment and function description
>sp|P53396|ACLY_HUMAN ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3 Back     alignment and function description
>sp|Q91V92|ACLY_MOUSE ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|Q32PF2|ACLY_BOVIN ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1 Back     alignment and function description
>sp|Q2TCH3|ACLY_SHEEP ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
255543008 423 ATP-citrate synthase, putative [Ricinus 1.0 0.569 0.966 1e-135
378405606 423 ATP-citrate synthase [Camellia sinensis] 1.0 0.569 0.954 1e-134
449435576 423 PREDICTED: ATP-citrate synthase alpha ch 1.0 0.569 0.950 1e-134
224124562 423 predicted protein [Populus trichocarpa] 1.0 0.569 0.937 1e-133
224124954 423 predicted protein [Populus trichocarpa] 0.991 0.565 0.945 1e-132
225450474 423 PREDICTED: ATP-citrate synthase alpha ch 0.995 0.567 0.933 1e-131
147775765 423 hypothetical protein VITISV_017316 [Viti 0.995 0.567 0.937 1e-131
359487578 435 PREDICTED: ATP-citrate synthase alpha ch 0.995 0.551 0.933 1e-131
297843736 424 ATP-citrate lyase A-3 [Arabidopsis lyrat 0.987 0.561 0.936 1e-131
122248711 423 RecName: Full=ATP-citrate synthase alpha 0.995 0.567 0.925 1e-130
>gi|255543008|ref|XP_002512567.1| ATP-citrate synthase, putative [Ricinus communis] gi|223548528|gb|EEF50019.1| ATP-citrate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/241 (96%), Positives = 237/241 (98%)

Query: 1   MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRV 60
           MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKW NIEFPLPFGRV
Sbjct: 183 MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRV 242

Query: 61  LSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA 120
           LS TESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA
Sbjct: 243 LSPTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA 302

Query: 121 EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKE 180
           EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVA TFNGIIRALREKE
Sbjct: 303 EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAATFNGIIRALREKE 362

Query: 181 SKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSA 240
           SKLKAARMHI+VRRGGPNYQTGLAKMR LGEE+G+PLEVYGPEATMTGICKQAIDCIMSA
Sbjct: 363 SKLKAARMHIYVRRGGPNYQTGLAKMRTLGEEVGVPLEVYGPEATMTGICKQAIDCIMSA 422

Query: 241 S 241
           +
Sbjct: 423 A 423

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|378405606|gb|AFB82642.1| ATP-citrate synthase [Camellia sinensis] Back     alignment and taxonomy information
>gi|449435576|ref|XP_004135571.1| PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Cucumis sativus] gi|449508610|ref|XP_004163361.1| PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224124562|ref|XP_002330054.1| predicted protein [Populus trichocarpa] gi|222871479|gb|EEF08610.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124954|ref|XP_002319466.1| predicted protein [Populus trichocarpa] gi|222857842|gb|EEE95389.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225450474|ref|XP_002280514.1| PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform 1 [Vitis vinifera] gi|296089834|emb|CBI39653.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147775765|emb|CAN64797.1| hypothetical protein VITISV_017316 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359487578|ref|XP_003633614.1| PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297843736|ref|XP_002889749.1| ATP-citrate lyase A-3 [Arabidopsis lyrata subsp. lyrata] gi|297335591|gb|EFH66008.1| ATP-citrate lyase A-3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|122248711|sp|Q2QZ86.2|ACLA2_ORYSJ RecName: Full=ATP-citrate synthase alpha chain protein 2; Short=ATP-citrate synthase A-2; AltName: Full=ATP-citrate lyase A-2; AltName: Full=Citrate cleavage enzyme A-2 gi|108864675|gb|ABA95548.2| ATP-citrate synthase, putative, expressed [Oryza sativa Japonica Group] gi|218186206|gb|EEC68633.1| hypothetical protein OsI_37024 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
TAIR|locus:2012310424 ACLA-3 "ATP-citrate lyase A-3" 0.987 0.561 0.924 9.8e-119
TAIR|locus:2025865423 ACLA-2 "ATP-citrate lyase A-2" 0.991 0.565 0.857 2.2e-112
DICTYBASE|DDB_G0278341450 DDB_G0278341 "putative ATP cit 0.975 0.522 0.604 6.5e-74
FB|FBgn0020236 1112 ATPCL "ATP citrate lyase" [Dro 0.954 0.206 0.536 6e-61
ASPGD|ASPL0000045833485 aclA [Emericella nidulans (tax 0.755 0.375 0.566 2.9e-60
UNIPROTKB|F1S0N2524 ACLY "Uncharacterized protein" 0.966 0.444 0.502 8.1e-60
UNIPROTKB|J9NST7 1091 ACLY "Uncharacterized protein" 0.958 0.211 0.510 2.3e-59
ZFIN|ZDB-GENE-031113-1 1092 aclya "ATP citrate lyase a" [D 0.962 0.212 0.5 2.3e-59
UNIPROTKB|F1Q3V2 1139 ACLY "Uncharacterized protein" 0.958 0.202 0.510 2.8e-59
UNIPROTKB|Q32PF2 1091 ACLY "ATP-citrate synthase" [B 0.958 0.211 0.510 3e-59
TAIR|locus:2012310 ACLA-3 "ATP-citrate lyase A-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 220/238 (92%), Positives = 232/238 (97%)

Query:     1 MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRV 60
             MG FAVFQDLDFSF+EMNPFTLV+GEP+PLDMRGELDDTAAFKNF KW +IEFPLPFGRV
Sbjct:   183 MGAFAVFQDLDFSFMEMNPFTLVDGEPFPLDMRGELDDTAAFKNFNKWGDIEFPLPFGRV 242

Query:    61 LSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA 120
             LSSTE+FIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA
Sbjct:   243 LSSTENFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA 302

Query:   121 EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKE 180
             EYSGAPNEEEVLQYARVVIDCAT DPDGRKRALLIGGGIANFTDVA TFNGIIRALREKE
Sbjct:   303 EYSGAPNEEEVLQYARVVIDCATTDPDGRKRALLIGGGIANFTDVAATFNGIIRALREKE 362

Query:   181 SKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 238
             ++LKA+RMHI+VRRGGPNYQTGLA+MRALGEELG+PLEVYGPEATMTGICK+AIDCIM
Sbjct:   363 TRLKASRMHIYVRRGGPNYQTGLARMRALGEELGVPLEVYGPEATMTGICKRAIDCIM 420
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016874 "ligase activity" evidence=IEA
GO:0003878 "ATP citrate synthase activity" evidence=ISS
GO:0006085 "acetyl-CoA biosynthetic process" evidence=TAS
GO:0009346 "citrate lyase complex" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=RCA
TAIR|locus:2025865 ACLA-2 "ATP-citrate lyase A-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278341 DDB_G0278341 "putative ATP citrate synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0020236 ATPCL "ATP citrate lyase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000045833 aclA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1S0N2 ACLY "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9NST7 ACLY "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031113-1 aclya "ATP citrate lyase a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q3V2 ACLY "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PF2 ACLY "ATP-citrate synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2QZ86ACLA2_ORYSJ2, ., 3, ., 3, ., 80.9250.99580.5673yesno
O80526ACLA3_ARATH2, ., 3, ., 3, ., 80.92430.98750.5613yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_1310041
ATP citrate (pro-S)-lyase (EC-2.3.3.8) (424 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIX.2128.1
hypothetical protein (435 aa)
     •  0.899
gw1.XIV.3318.1
aconitate hydratase 1 (EC-4.2.1.3) (897 aa)
     •  0.899
gw1.97.147.1
dihydrolipoamide acetyltransferase (448 aa)
     •  0.899
gw1.8105.3.1
annotation not avaliable (106 aa)
     •  0.899
gw1.4745.2.1
annotation not avaliable (67 aa)
     •  0.899
grail3.0001073802
SubName- Full=Putative uncharacterized protein; (354 aa)
     •  0.899
fgenesh4_pm.C_LG_I001100
malate dehydrogenase (EC-1.1.1.37) (356 aa)
     •  0.899
fgenesh4_pg.C_scaffold_155000049
malate dehydrogenase (EC-1.1.1.37) (412 aa)
     •  0.899
fgenesh4_pg.C_LG_III000191
SubName- Full=Putative uncharacterized protein; (512 aa)
     •  0.899
eugene3.01810009
aconitate hydratase 1 (EC-4.2.1.3) (899 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
PLN02235423 PLN02235, PLN02235, ATP citrate (pro-S)-lyase 0.0
COG0045387 COG0045, SucC, Succinyl-CoA synthetase, beta subun 2e-19
TIGR01016386 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be 3e-05
>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase Back     alignment and domain information 
 Score =  535 bits (1381), Expect = 0.0
 Identities = 223/241 (92%), Positives = 233/241 (96%)

Query: 1   MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRV 60
            GVFAVFQDLDF+F+EMNPFTLV+GEPYPLDMRGELDDTAAFKNFKKW NIEFPLPFGRV
Sbjct: 183 KGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRV 242

Query: 61  LSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA 120
           +S TESFIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA
Sbjct: 243 MSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA 302

Query: 121 EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKE 180
           EYSGAPNEEEVLQYARVVIDCATA+PDGRKRALLIGGGIANFTDVA TFNGIIRALREKE
Sbjct: 303 EYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKE 362

Query: 181 SKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSA 240
           SKLKAARMHIFVRRGGPNYQ GLAKMRALGEE+G+P+EVYGPEATMTGICKQAID I +A
Sbjct: 363 SKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAIDYITAA 422

Query: 241 S 241
           +
Sbjct: 423 A 423

Length = 423
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 241
PLN02235423 ATP citrate (pro-S)-lyase 100.0
COG0045387 SucC Succinyl-CoA synthetase, beta subunit [Energy 100.0
PLN00124422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 100.0
KOG1447412 consensus GTP-specific succinyl-CoA synthetase, be 100.0
PRK14046392 malate--CoA ligase subunit beta; Provisional 100.0
KOG2799434 consensus Succinyl-CoA synthetase, beta subunit [E 100.0
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 100.0
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 100.0
PF00549153 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e 99.85
KOG1254 600 consensus ATP-citrate lyase [Energy production and 99.75
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 99.27
COG1042 598 Acyl-CoA synthetase (NDP forming) [Energy producti 97.11
PF13607138 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin 95.9
PRK06091 555 membrane protein FdrA; Validated 95.69
PTZ00187317 succinyl-CoA synthetase alpha subunit; Provisional 95.59
PLN02522 608 ATP citrate (pro-S)-lyase 95.5
PLN00125300 Succinyl-CoA ligase [GDP-forming] subunit alpha 94.24
TIGR02717 447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 93.58
TIGR01019286 sucCoAalpha succinyl-CoA synthetase, alpha subunit 93.43
PRK05678291 succinyl-CoA synthetase subunit alpha; Validated 93.24
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 92.32
COG0074293 SucD Succinyl-CoA synthetase, alpha subunit [Energ 87.22
cd07023208 S49_Sppa_N_C Signal peptide peptidase A (SppA), a 80.19
>PLN02235 ATP citrate (pro-S)-lyase Back     alignment and domain information 
Probab=100.00  E-value=2.4e-75  Score=551.18  Aligned_cols=237  Identities=90%  Similarity=1.415  Sum_probs=218.3

Q ss_pred             ChhhhhhhhcCceeeeeeceeeeCCcEEEeeeeeeecCCccccCccccccccCCCCCCCCCCccccccccchhhccCccc
Q 026236            1 MGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLK   80 (241)
Q Consensus         1 ~~Ly~~f~~~D~~l~EINPL~~~~g~~~alDak~~iDdnA~fR~~e~~~~~~~~~~~~r~~~~~e~~~~e~~~~~g~~l~   80 (241)
                      .+||++|.++||||+|||||++.||+++|||+|++|||||+|||++.|..++||.||.|+.+|+|.++.+++++++++||
T Consensus       183 ~~Ly~~F~~~D~tllEINPLv~~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~~~fgr~~~~~E~~~~~~d~a~~~~l~  262 (423)
T PLN02235        183 KGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLK  262 (423)
T ss_pred             HHHHHHHHHcCCeEEEecceEeeCCCEEEEEeEEcccCCCcccCHhHhhhhcccccccCCCCHHHHhhccchhhhccCCc
Confidence            37999999999999999999998899999999999999999999998888889999999999999988888877777899


Q ss_pred             eEEecCCccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEEEecccc
Q 026236           81 FTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA  160 (241)
Q Consensus        81 yv~L~~dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~inI~GGI~  160 (241)
                      |+.+++|||||||+|||||+|+|||+|+++|++|+||||||+||+|+.++|++|+++|++.|+.++++++||||||||| 
T Consensus       263 y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI-  341 (423)
T PLN02235        263 FTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGI-  341 (423)
T ss_pred             eEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEeccc-
Confidence            9666559999999999999999999999994339999999999999999999999999976666788888999999999 


Q ss_pred             ccccHHHHH---HHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHh
Q 026236          161 NFTDVATTF---NGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI  237 (241)
Q Consensus       161 n~T~~d~iA---~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av~~~  237 (241)
                        ||||.||   +||++|++++..++++.++||||||.|||+++|+++|+++++++|+|+++|+++++|++||++||+..
T Consensus       342 --~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~~il~e~~~~~gl~i~~~~~~~~m~~a~~~av~~~  419 (423)
T PLN02235        342 --ANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAIDYI  419 (423)
T ss_pred             --ccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHHHHHHHhHHhcCCcEEEeCCCCCHHHHHHHHHhhh
Confidence              6999999   99999999997656667899999999999999999998888899999999999999999999999876


Q ss_pred             hhc
Q 026236          238 MSA  240 (241)
Q Consensus       238 ~~~  240 (241)
                      .+|
T Consensus       420 ~~~  422 (423)
T PLN02235        420 TAA  422 (423)
T ss_pred             ccC
Confidence            554

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 Back     alignment and domain information
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion] Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
3pff_A 829 Truncated Human Atp-Citrate Lyase With Adp And Tart 3e-65
3mwe_A425 Truncated Human Atp-Citrate Lyase With Tartrate Bou 4e-65
3mwd_A425 Truncated Human Atp-Citrate Lyase With Citrate Boun 9e-63
1euc_B396 Crystal Structure Of Dephosphorylated Pig Heart, Gt 8e-04
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829 Back     alignment and structure 
Iteration: 1

 Score =  244 bits (623), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 4/235 (1%)
Query: 2   GVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVL 61
           G+F  ++DL F+++E+NP  +     Y LD+  ++D TA +    KW +IEFP PFGR  
Sbjct: 187 GLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREA 246
Query: 62  SSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 121
              E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY E
Sbjct: 247 YPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGE 306
Query: 122 YSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGIIRALREK 179
           YSGAP+E++   YA+ ++   T +  PDG  + L+IGG IANFT+VA TF GI+RA+R+ 
Sbjct: 307 YSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDY 364
Query: 180 ESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 234
           +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A+
Sbjct: 365 QGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 425 Back     alignment and structure
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 425 Back     alignment and structure
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 1e-122
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 1e-105
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 Back     alignment and structure
 Score =  366 bits (940), Expect = e-122
 Identities = 117/240 (48%), Positives = 159/240 (66%)

Query: 2   GVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVL 61
           G+F  ++DL F+++E+NP  +     Y LD+  ++D TA +    KW +IEFP PFGR  
Sbjct: 187 GLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREA 246

Query: 62  SSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 121
              E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY E
Sbjct: 247 YPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGE 306

Query: 122 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 181
           YSGAP+E++   YA+ ++   T +     + L+IGG IANFT+VA TF GI+RA+R+ + 
Sbjct: 307 YSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQG 366

Query: 182 KLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS 241
            LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A+      +
Sbjct: 367 PLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALGHRPIPN 426
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 100.0
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 100.0
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 100.0
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 100.0
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 100.0
2csu_A457 457AA long hypothetical protein; structural genomi 99.85
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 97.79
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 96.67
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 95.77
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 95.52
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 95.22
3dmy_A 480 Protein FDRA; predicted actyl-COA synthetase, nysg 95.1
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 94.76
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 94.6
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 91.4
2csu_A 457 457AA long hypothetical protein; structural genomi 87.4
2yxb_A161 Coenzyme B12-dependent mutase; alpha/beta, structu 86.05
3dbi_A338 Sugar-binding transcriptional regulator, LACI FAM; 83.05
3g85_A289 Transcriptional regulator (LACI family); transcrip 80.71
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-69  Score=514.76  Aligned_cols=223  Identities=44%  Similarity=0.817  Sum_probs=200.2

Q ss_pred             hhhhhhhhcCceeeeeeceeeeCCcEEEeeeeeeecCCccccCccccccccCCCCCCCCCCccccccccchhhcc--Ccc
Q 026236            2 GVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTS--ASL   79 (241)
Q Consensus         2 ~Ly~~f~~~D~~l~EINPL~~~~g~~~alDak~~iDdnA~fR~~e~~~~~~~~~~~~r~~~~~e~~~~e~~~~~g--~~l   79 (241)
                      +||++|.++|++++|||||+++.++++|+|+|+.|||||+||||+.|+++++|.+|.|+.+|+|.++.|++++++  +.|
T Consensus       187 ~L~~lf~d~d~~~lEINPLvvt~~gv~AlDAki~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~l  266 (425)
T 3mwd_A          187 GLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKL  266 (425)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEEETTEEEECCEEEEEEGGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEEE
T ss_pred             HHHHHHHhCCccEEEeeeeEEcCCceEEEeceeecccchhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccCc
Confidence            799999999999999999999644599999999999999999999999888888899999999999988887754  248


Q ss_pred             ceEEecCCccEEEEecCchhHHHHHHHHHhhccCC--CCcceeccCCCCCHHHHHHH----HHHHhhcccCCCCcceEEE
Q 026236           80 KFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVLQY----ARVVIDCATADPDGRKRAL  153 (241)
Q Consensus        80 ~yv~L~~dG~Ig~mvnGaGlaMatmD~i~~~~~gg--~pANFlD~GG~a~~~~v~~a----~~iil~~~~~~~~~~~i~i  153 (241)
                      ||+.|  |||||||||||||+|+|||+|+++  ||  +||||||+||+|++++|+++    |+++++|    +++++|||
T Consensus       267 ~yv~l--dG~Ig~mvNGaGlamat~D~i~~~--Gg~~~pANflD~gG~a~~e~v~~~~~~~l~ii~~d----~~vk~i~v  338 (425)
T 3mwd_A          267 TLLNP--KGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQTYDYAKTILSLMTRE----KHPDGKIL  338 (425)
T ss_dssp             EESCT--TCSEEECCBSHHHHHHHHHHHHHT--TCGGGBCEEEEEESCCCHHHHHHHHHHHHHHTTSS----CCTTCEEE
T ss_pred             cEEec--CCeEEEEecCchHHHHHHHHHHHc--CCCcCCcceEEecCCCCHHHHHHHHHHHHHHHhcC----CCCCEEEE
Confidence            89998  999999999999999999999999  88  79999999999999999987    6777666    55556899


Q ss_pred             EEeccccccccHHHHH---HHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHH
Q 026236          154 LIGGGIANFTDVATTF---NGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGIC  230 (241)
Q Consensus       154 nI~GGI~n~T~~d~iA---~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav  230 (241)
                      ||||||   ||||.||   +||++|++++...+...++||||||+|||+++|+++|++..+++|+|+++|+++++|+++|
T Consensus       339 nIfGGI---~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~eg~~il~~~g~~lgip~~~~gpe~~~~~i~  415 (425)
T 3mwd_A          339 IIGGSI---ANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIV  415 (425)
T ss_dssp             EECBCB---CSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHTCCEEEECTTSCTTHHH
T ss_pred             EecCCc---ccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcCCHHHHHHHHHhCCcccCCceEEeCccchHHHHH
Confidence            999999   6888888   9999999998543333589999999999999998888877777889999999999999999


Q ss_pred             HHHHH
Q 026236          231 KQAID  235 (241)
Q Consensus       231 ~~av~  235 (241)
                      .+|++
T Consensus       416 ~~a~~  420 (425)
T 3mwd_A          416 GMALG  420 (425)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            99975
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Back     alignment and structure
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} Back     alignment and structure
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Back     alignment and structure
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 241
d2nu7b1150 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta 1e-12
d1eucb1148 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta 3e-05
d2nu7b2238 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta- 9e-05
d1eucb2246 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta- 3e-04
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 61.4 bits (149), Expect = 1e-12
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 21/147 (14%)

Query: 88  GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPD 147
           G I  MV G G ++   D V   G   E  N+ +  G   +E V +  +++     +D  
Sbjct: 19  GNIGCMVNGAGLAMGTMDIVKLHG--GEPANFLDVGGGATKERVTEAFKII----LSDDK 72

Query: 148 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 207
            +    ++              +GII A+ E    +      + VR  G N + G  K+ 
Sbjct: 73  VKA---VLVNIFGGIVRCDLIADGIIGAVAEVGVNVP-----VVVRLEGNNAELGAKKLA 124

Query: 208 ALGEELGIPLEVYGPEATMTGICKQAI 234
               + G+ +        +T   +Q +
Sbjct: 125 ----DSGLNII---AAKGLTDAAQQVV 144
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 148 Back     information, alignment and structure
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238 Back     information, alignment and structure
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
d1eucb1148 Succinyl-CoA synthetase, beta-chain, C-terminal do 100.0
d2nu7b1150 Succinyl-CoA synthetase, beta-chain, C-terminal do 100.0
d2csua3163 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 99.46
d2csua2161 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 96.72
d1euca2176 Succinyl-CoA synthetase, alpha-chain, C-terminal d 95.24
d1oi7a2167 Succinyl-CoA synthetase, alpha-chain, C-terminal d 95.08
d2nu7a2166 Succinyl-CoA synthetase, alpha-chain, C-terminal d 93.53
d7reqa2168 Methylmalonyl-CoA mutase alpha subunit, C-terminal 90.29
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.9e-56  Score=366.05  Aligned_cols=138  Identities=25%  Similarity=0.361  Sum_probs=129.6

Q ss_pred             ccCccceEEecCCccEEEEecCchhHHHHHHHHHhhccCCCCcceeccCCCCCHHHHHHHHHHHhhcccCCCCcceEEEE
Q 026236           75 TSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALL  154 (241)
Q Consensus        75 ~g~~l~yv~L~~dG~Ig~mvnGaGlaMatmD~i~~~~~gg~pANFlD~GG~a~~~~v~~a~~iil~~~~~~~~~~~i~in  154 (241)
                      +|  |+||+|  |||||||+|||||+|+|||+|+++  ||+||||||+||+|+.++|++||++|+++    +++++||||
T Consensus        10 ~~--l~yv~L--dG~IG~i~NGAGlaMaTmD~i~~~--Gg~pANFlDiGGga~~e~v~~al~iil~d----~~Vk~IlIN   79 (148)
T d1eucb1          10 YD--LKYIGL--DGNIACFVNGAGLAMATCDIIFLN--GGKPANFLDLGGGVKESQVYQAFKLLTAD----PKVEAILVN   79 (148)
T ss_dssp             TT--CEEEEC--SCSEEEEESSHHHHHHHHHHHHHT--TCCBSEEEECCSSCCHHHHHHHHHHTTSC----TTCCEEEEE
T ss_pred             cC--CcEEEe--cCcEEEEecCCccchhHHHHHHHc--CCCeeeEEecCCCCCHHHHHHHHHHHHCC----CCccEEEEE
Confidence            56  779999  999999999999999999999999  99999999999999999999999999998    455568999


Q ss_pred             EeccccccccHHHHHHHHHHHHHHhhhhhcccceeEEEEecCCChhHHHHHHHHHHHHhCCCeEEcCCCCCHHHHHHHHH
Q 026236          155 IGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI  234 (241)
Q Consensus       155 I~GGI~n~T~~d~iA~GIv~A~~~~~~~~~~~~vPiVvRl~Gtn~~~g~~~l~~~l~~~gi~i~~~~~~~~m~eav~~av  234 (241)
                      |||||   ||||++|+||++|+++.+.     ++||||||.|||+++|    |++|+++|+|+++++   +|+||+++||
T Consensus        80 IfGGI---~rcD~vA~GIv~A~~e~~~-----~iPiVVRL~Gtn~eeg----~~iL~~sgl~i~~~~---~l~eAa~~aV  144 (148)
T d1eucb1          80 IFGGI---VNCAIIANGITKACRELEL-----KVPLVVRLEGTNVHEA----QNILTNSGLPITSAV---DLEDAAKKAV  144 (148)
T ss_dssp             EECSS---SCHHHHHHHHHHHHHHHTC-----CSCEEEEEESTTHHHH----HHHHHTTCSSEEECS---SHHHHHHHHH
T ss_pred             eeEee---hhHHHHHHHHHHHHHhcCC-----CccEEEEeccCChHHH----HHHHHHCCCCeEEeC---CHHHHHHHHH
Confidence            99999   7999999999999999874     8999999999999999    999999999999664   9999999999


Q ss_pred             HHh
Q 026236          235 DCI  237 (241)
Q Consensus       235 ~~~  237 (241)
                      +.+
T Consensus       145 ~~~  147 (148)
T d1eucb1         145 ASV  147 (148)
T ss_dssp             HTC
T ss_pred             Hhc
Confidence            864
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure