Citrus Sinensis ID: 026244

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTFNL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEccccccccHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSVIDILTRVDSICKkydkydvekqretnvsgDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVlalpdriqaipdgtaaapkqsggwgasasrteikfdsdgrfddeyfQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMneevdrqvplmdeiDTKVDRATADLKNTNVRLKHTVTQVMTFNL
Flexible Loop (DISEMBL)
msvidiltrvdsickkydkydvekqretnvsgddAFARLYGAVEADIEAALQkaesasneknrasVVALNAEIRRTkarlleevpklqrlaikkvkglsteelVARNDLVLALPDRIQAIPdgtaaapkqsggwgasasrteIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRatadlkntnvrlkhtvtqvmtfnl
Low Complexity Region (SEG)
MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTFNL
Disordered region (IsUnstruct)
**VIDILTRVDSICKKYDKYDVEK****NVSGDDAFARLYGAVEADIE*****************VVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI************************************************************************************************************L************
Disordered Region (DISOPRED)
*SVIDILTRVDSICKKYDK******************RLYGAVEADI*************************IRRTKARLLEEVP**********************DLVLALP****************************************************************GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTF**
Disordered Region (DISEMBL)
MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAAL************ASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDG****************RTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTFNL
Disordered Region (DISPRO)
*SVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPD***********************DSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTFNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLxxxxxxxxxxxxxxxxxxxxxKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTFNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q9SF29	266	Syntaxin-71 OS=Arabidopsi	yes	no	0.979	0.887	0.794	1e-108
Q94KK6	267	Syntaxin-72 OS=Arabidopsi	no	no	0.979	0.883	0.661	1e-85
Q94KK5	263	Syntaxin-73 OS=Arabidopsi	no	no	0.962	0.882	0.661	3e-85
Q54IX6	250	Probable syntaxin-8B OS=D	yes	no	0.788	0.76	0.241	9e-07
Q9LMG8	263	Putative SNAP25 homologou	no	no	0.286	0.262	0.362	0.0002
Q9S7P9	300	SNAP25 homologous protein	no	no	0.369	0.296	0.337	0.0006

>sp|Q9SF29|SYP71_ARATH Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1

 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/238 (79%), Positives = 211/238 (88%), Gaps = 2/238 (0%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           M+VIDILTRVDSICKKYDKYDV+KQRE N+SGDDAFARLYGA E  IE AL+KAE  + E
Sbjct: 1   MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           KNRA+ VA+NAEIRRTKARL EEVPKLQRLA+K+VKGL+TEEL ARNDLVLALP RI+AI
Sbjct: 61  KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120

Query: 121 PDGTAAAPKQSGGWGASA--SRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQ 178
           PDGTA  PK +  W  S+  SR +IKFDSDGRFDD+YFQ++ ESSQFRQEYEMRK+KQ+Q
Sbjct: 121 PDGTAGGPKSTSAWTPSSTTSRPDIKFDSDGRFDDDYFQESNESSQFRQEYEMRKIKQEQ 180

Query: 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           GLDMISEGLD LKNMA DMNEE+DRQVPLMDEIDTKVDRAT+DLKNTNVRLK TV Q+
Sbjct: 181 GLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQL 238

Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94KK6|SYP72_ARATH Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 158/239 (66%), Positives = 195/239 (81%), Gaps = 3/239 (1%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           M VIDI+ RVD ICKKYDKYD++K RE   SGDDAF+RL+ ++++DIEA L+KAE AS E
Sbjct: 1   MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           KNRA+ VA+NAE+RRTKARL E+V KLQ+LA+KK+KGL+ EE  +R DLV+AL DR+QAI
Sbjct: 61  KNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAI 120

Query: 121 PDGTAAAPKQSGG-W-GASASRTEIKFD-SDGRFDDEYFQQTEESSQFRQEYEMRKMKQD 177
           PDG     KQ+   W GASA    IKFD S+   DD +FQQ+EESSQFRQEYEMR+ KQD
Sbjct: 121 PDGNEHGAKQANSDWGGASAPNKNIKFDMSEEDMDDGFFQQSEESSQFRQEYEMRRKKQD 180

Query: 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           +GLD+ISEGLD LKN+A DMNEE+D+QVPLM+E++TKVD AT+DLKNTNVRLK  + Q+
Sbjct: 181 EGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGATSDLKNTNVRLKKQLVQM 239

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KK5|SYP73_ARATH Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1

 Score =  314 bits (805), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 158/239 (66%), Positives = 192/239 (80%), Gaps = 7/239 (2%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           M VID++TRVDSICKKY+KYD+ +QR+ NVSGDDAF+RLY AVE  +E  LQK E  S+E
Sbjct: 1   MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
            N+A  VA+NAEIRRTKARLLE +PKLQRL++KKVKGLS EEL ARNDLVL+L D+I+AI
Sbjct: 61  TNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEAI 120

Query: 121 PDGTAAAPKQSGGWGASASRTEIKFD---SDGRFDDEYFQQTEESSQFRQEYEMRKMKQD 177
           P+ +A      GGW AS S + I+FD   SD R   EYFQ T ES QF+QEYEM+++KQ 
Sbjct: 121 PESSAPV---VGGWEASTSYSNIRFDTNVSDDRIGSEYFQPTGESDQFKQEYEMKRIKQA 177

Query: 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           + LD I+EGLDTLKNMA D+NEE+DRQ PLMDEIDTK+D+A  DLK+TNVRLK TVT++
Sbjct: 178 R-LDYIAEGLDTLKNMAQDINEELDRQEPLMDEIDTKIDKAATDLKSTNVRLKDTVTKL 235

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54IX6|STX8B_DICDI Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1

 Score = 53.9 bits (128), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 106/215 (49%), Gaps = 25/215 (11%)

Query: 34  DAFARLYGAVEADIEAALQKAESASNEKNRASVVALN--AEIRRTKARLLEEVPKLQ-RL 90
           D   +L  ++ ADI+      E +  ++N   +V  N  A++R     +  E+ +LQ  L
Sbjct: 10  DNIVKLINSLTADIK------EYSIQQRNNPGIVQKNTPAKLRNGLVHITNEILRLQDSL 63

Query: 91  AIKKVKGLSTEELVARNDLV---LALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDS 147
                + +  +EL+ R + V   +++ +++ +  D       Q      + +   I + S
Sbjct: 64  TYGNNRNIQEKELLRRKNKVESLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGY-S 122

Query: 148 DGRFDDEYFQQTEESSQF-------RQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEE 200
           + +F     ++TE + QF        Q++ MR+  QD+ LD++S+ +   KNMAH M+ E
Sbjct: 123 NRQFGKP--KETEATKQFDNQQLFTNQQHIMRE--QDESLDLLSQSIMRQKNMAHAMSNE 178

Query: 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235
           +D+   ++D+++   D  +  L+N N R++ T+ Q
Sbjct: 179 LDQHNEMLDDVEIGTDAVSMRLRNANRRME-TIKQ 212

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LMG8|SNP30_ARATH Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query: 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226
           Q+ E  K KQD GL  +S+ L  LK+MA DM  E+D+Q   +D +   VD   + ++  N
Sbjct: 195 QKVEQEKAKQDDGLSDLSDILGDLKSMAVDMGSEIDKQNKALDHLGDDVDELNSRVQGAN 254

Query: 227 VRLKHTVTQ 235
            R +H +++
Sbjct: 255 QRARHLLSK 263

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%)

Query: 140 RTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNE 199
           R ++  +S  R      +   ES+   Q  EM K KQD GL  +S+ L  LKNMA DM  
Sbjct: 205 REKLGLNSAPRGQSRTREPLPESADAYQRVEMEKAKQDDGLSDLSDILGELKNMAVDMGS 264

Query: 200 EVDRQVPLMDEIDTKVDRATADLKNTNVR 228
           E+++Q   +D +   VD     ++ +N R
Sbjct: 265 EIEKQNKGLDHLHDDVDELNFRVQQSNQR 293

t-SNARE involved in diverse vesicle trafficking and membrane fusion processes, including cell plate formation. May function in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
225439930	265	PREDICTED: syntaxin-71 [Vitis vinifera]	0.979	0.890	0.889	1e-120
449440087	265	PREDICTED: syntaxin-71-like [Cucumis sat	0.979	0.890	0.864	1e-117
449526944	265	PREDICTED: syntaxin-71-like [Cucumis sat	0.979	0.890	0.860	1e-117
255557036	266	syntaxin, putative [Ricinus communis] gi	0.979	0.887	0.869	1e-117
449453330	265	PREDICTED: syntaxin-71-like [Cucumis sat	0.979	0.890	0.860	1e-116
224138654	265	predicted protein [Populus trichocarpa]	0.979	0.890	0.851	1e-116
356548236	265	PREDICTED: syntaxin-71-like [Glycine max	0.979	0.890	0.843	1e-114
356537535	265	PREDICTED: syntaxin-71-like [Glycine max	0.979	0.890	0.838	1e-114
356572427	265	PREDICTED: syntaxin-71-like [Glycine max	0.979	0.890	0.834	1e-114
359807151	265	uncharacterized protein LOC100780958 [Gl	0.979	0.890	0.826	1e-112

>gi|225439930|ref|XP_002280272.1| PREDICTED: syntaxin-71 [Vitis vinifera] gi|297741579|emb|CBI32711.3| unnamed protein product [Vitis vinifera]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/236 (88%), Positives = 224/236 (94%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           M+VIDILTRVD+ICKKYDKYD++KQ++ NVSGDDAFARLY  VEADIEAALQKA++ASNE
Sbjct: 1   MTVIDILTRVDAICKKYDKYDIDKQKDLNVSGDDAFARLYAVVEADIEAALQKADTASNE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           KNRAS VALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEEL ARNDLVLALPDRIQAI
Sbjct: 61  KNRASAVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELAARNDLVLALPDRIQAI 120

Query: 121 PDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDG A APKQ+GGW ASASRTEIKFDSDGRFD EYFQQTEESSQFRQEYEMRKM QDQGL
Sbjct: 121 PDGAATAPKQTGGWAASASRTEIKFDSDGRFDSEYFQQTEESSQFRQEYEMRKMNQDQGL 180

Query: 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           D+I+EGLDTLKNMAHDMNEE+DRQVPLMDEIDTKVD+ATADLKNTNVRLK TV Q+
Sbjct: 181 DVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKATADLKNTNVRLKDTVNQL 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440087|ref|XP_004137816.1| PREDICTED: syntaxin-71-like [Cucumis sativus]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/236 (86%), Positives = 219/236 (92%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           MSVID+LTRVD+IC+KYDKYD+EKQR+ NVSGDDAFARLY  VEADIEAALQKAE AS E
Sbjct: 1   MSVIDLLTRVDAICQKYDKYDIEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           KNRASVVALNAEIRRTKARLLEEVPKLQRLA+K+VKGLSTE+L  RNDLVLALPDRIQAI
Sbjct: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAI 120

Query: 121 PDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDGT    K +GGW +SASRTEIKFDSDGRFDDEYFQ TE+SSQFRQEYEMRKMKQDQGL
Sbjct: 121 PDGTVTTTKNNGGWTSSASRTEIKFDSDGRFDDEYFQHTEQSSQFRQEYEMRKMKQDQGL 180

Query: 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           DMISEGLDTLKNMAHDMNEE+DRQVPLMDEIDTKVD+A +DLKNTNVRLK TV Q+
Sbjct: 181 DMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQL 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526944|ref|XP_004170473.1| PREDICTED: syntaxin-71-like [Cucumis sativus]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/236 (86%), Positives = 219/236 (92%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           MSVID+LTRVD+IC+KYDKYD+EKQR+ NVSGDDAFARLY  VEADIEAALQKAE AS E
Sbjct: 1   MSVIDLLTRVDAICQKYDKYDIEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           KNRASVVALNAEIRRTKARLLEEVPKLQRLA+K+VKGLSTE+L  RNDLVLALPDRIQAI
Sbjct: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAI 120

Query: 121 PDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDGT    K +GGW +SASRTEIKFDSDGRFDDEYFQ TE+SSQFRQEYEMRKMKQDQGL
Sbjct: 121 PDGTVTTTKNNGGWTSSASRTEIKFDSDGRFDDEYFQHTEQSSQFRQEYEMRKMKQDQGL 180

Query: 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           DMISEGLDTLKNMAHDMNEE+DRQVPLMDEIDTKVD+A +DLKNTN+RLK TV Q+
Sbjct: 181 DMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNIRLKDTVNQL 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557036|ref|XP_002519551.1| syntaxin, putative [Ricinus communis] gi|223541414|gb|EEF42965.1| syntaxin, putative [Ricinus communis]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/237 (86%), Positives = 224/237 (94%), Gaps = 1/237 (0%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           MSVIDILTRVD+IC+KYD+YDVEKQ++ NVSGDDAFARLY  VEADIE+ALQKAE AS E
Sbjct: 1   MSVIDILTRVDAICQKYDRYDVEKQKDLNVSGDDAFARLYAVVEADIESALQKAEVASKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           KN+AS VALNAEIRRTKA+LLEEVPKLQRLA+KKVKGLSTEEL ARNDLVLALPDRIQAI
Sbjct: 61  KNKASAVALNAEIRRTKAKLLEEVPKLQRLAVKKVKGLSTEELTARNDLVLALPDRIQAI 120

Query: 121 PDGTAAAPKQSGGWGA-SASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQG 179
           PDG AAAPKQ+GGWGA SASRTEIKFDSDGRFD+EYFQ+ E SSQFRQEYEMR+MKQDQG
Sbjct: 121 PDGNAAAPKQTGGWGAPSASRTEIKFDSDGRFDNEYFQENETSSQFRQEYEMRRMKQDQG 180

Query: 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           LDMIS+GLDTLK+MAHDMNEE+DRQVPLMDEIDTKVD+ATADLKNTNVRLK TV Q+
Sbjct: 181 LDMISKGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDKATADLKNTNVRLKDTVNQL 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453330|ref|XP_004144411.1| PREDICTED: syntaxin-71-like [Cucumis sativus] gi|449500071|ref|XP_004160996.1| PREDICTED: syntaxin-71-like [Cucumis sativus]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/236 (86%), Positives = 217/236 (91%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           MSVID+LTRVD+IC+KYDKYD+EKQR+ NVSGDDAFARLY  VEADIEAALQKAE AS E
Sbjct: 1   MSVIDLLTRVDAICQKYDKYDIEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           KNRASVVALNAEIRRTKARLLE+VPKLQRLA+K+VKGLSTE+L  RNDLVLALPDRIQAI
Sbjct: 61  KNRASVVALNAEIRRTKARLLEDVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAI 120

Query: 121 PDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDGT    K +GGW  SASRTEIKFDS GRFDDEYFQ TEESSQFRQEYEMRKMKQDQGL
Sbjct: 121 PDGTVTTTKNNGGWTTSASRTEIKFDSGGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGL 180

Query: 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           DMISEGLDTLKNMAHDMNEE+DRQVPLMDEIDTKVD+A +DLKNTNVRLK TV Q+
Sbjct: 181 DMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQL 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138654|ref|XP_002322868.1| predicted protein [Populus trichocarpa] gi|222867498|gb|EEF04629.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/236 (85%), Positives = 221/236 (93%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           MSVIDILTRVD+IC KYDKYD+EKQ++ NVSGDDAFARLY A+++DIEAA QKAE AS E
Sbjct: 1   MSVIDILTRVDAICNKYDKYDIEKQKDLNVSGDDAFARLYAAIDSDIEAAHQKAELASKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           K++AS VA+NAE+RRTKARLLEEVPKLQRLA+KKVKGLSTEEL ARNDLVLALPDRIQAI
Sbjct: 61  KSKASAVAINAELRRTKARLLEEVPKLQRLAVKKVKGLSTEELAARNDLVLALPDRIQAI 120

Query: 121 PDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDGTAAAPKQ+GGWG SA R EIKFDSDG+FD+EYFQ+TE SSQFRQEYEMRKMKQDQGL
Sbjct: 121 PDGTAAAPKQTGGWGTSAPRAEIKFDSDGQFDNEYFQETETSSQFRQEYEMRKMKQDQGL 180

Query: 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           DMIS+GLDTLKNMAHDMNEE+DRQVPLMDEIDTKVD+A ADLKNTNVRLK TV Q+
Sbjct: 181 DMISDGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAAADLKNTNVRLKDTVNQL 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548236|ref|XP_003542509.1| PREDICTED: syntaxin-71-like [Glycine max]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/236 (84%), Positives = 218/236 (92%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           MSVIDILTRVDSICKKYDKYDVEK R+ NVSGDDAFARLY +V+ADI A LQKAESAS E
Sbjct: 1   MSVIDILTRVDSICKKYDKYDVEKHRDANVSGDDAFARLYASVDADIVALLQKAESASKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           K +AS VA+NAEIRRTKARLLEEVPKLQRLA+KKVKGLS++E  ARNDLVLALPDRIQAI
Sbjct: 61  KGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPDRIQAI 120

Query: 121 PDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDG    PKQ+GGW ASASR EIKFDSDGRFDDEYFQQ+E+SSQFRQEYEMR+MKQDQGL
Sbjct: 121 PDGAPPVPKQTGGWAASASRPEIKFDSDGRFDDEYFQQSEQSSQFRQEYEMRRMKQDQGL 180

Query: 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           D+I+EGLDTLKNMAHDMNEE+DRQVPLMDEIDTKVD+A++DLKNTNVRLK TV Q+
Sbjct: 181 DVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQL 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537535|ref|XP_003537282.1| PREDICTED: syntaxin-71-like [Glycine max]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/236 (83%), Positives = 219/236 (92%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           MSVIDILTRVDSICKKYDKYDV+K R+ NVSGDDAFARLY +V+ADIEA LQKAESAS E
Sbjct: 1   MSVIDILTRVDSICKKYDKYDVDKHRDANVSGDDAFARLYASVDADIEALLQKAESASKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           K +AS VA+NAEIRRTKARLLEEVPKLQRLA+KKVKGLS++E  ARNDLVLALPDRIQAI
Sbjct: 61  KGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPDRIQAI 120

Query: 121 PDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDG    PKQ+GGW ASASR EIKFDSDGRFDDEYFQQ+E+S+QFRQEYEMR+MKQDQGL
Sbjct: 121 PDGAPPVPKQTGGWAASASRPEIKFDSDGRFDDEYFQQSEQSNQFRQEYEMRRMKQDQGL 180

Query: 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           D+I+EGLDTLKNMAHDMNEE+DRQVPLMDEIDTKVD+A++DLKNTNVRLK TV Q+
Sbjct: 181 DVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQL 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572427|ref|XP_003554370.1| PREDICTED: syntaxin-71-like [Glycine max]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/236 (83%), Positives = 219/236 (92%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           MSVIDILTRVDSICKKYDKYDVEKQR++N+S DDAFA+LY +V+ADIEA LQKAE+A  E
Sbjct: 1   MSVIDILTRVDSICKKYDKYDVEKQRDSNLSADDAFAKLYASVDADIEALLQKAETADKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           K++AS VA+NAEIRRTKARLLEEVPKLQRLA+KKVKGLS++E  ARNDL LALPDRIQAI
Sbjct: 61  KSKASTVAINAEIRRTKARLLEEVPKLQRLAMKKVKGLSSQEFAARNDLALALPDRIQAI 120

Query: 121 PDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDG  AAPKQ+G W ASASR  IKFDSDG+FDDEYFQQTEESS+FRQEYEMRKMKQDQGL
Sbjct: 121 PDGAPAAPKQTGSWAASASRPGIKFDSDGKFDDEYFQQTEESSRFRQEYEMRKMKQDQGL 180

Query: 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           DMI+EGLDTLKNMAHDMNEE+DRQVPLMDEIDTKVDRA++DLKNTNVRL+ TV Q+
Sbjct: 181 DMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDRASSDLKNTNVRLRDTVNQL 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807151|ref|NP_001241097.1| uncharacterized protein LOC100780958 [Glycine max] gi|255646151|gb|ACU23561.1| unknown [Glycine max]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/236 (82%), Positives = 218/236 (92%)

Query: 1   MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
           MSVIDILTRVDSICKKYDKYDV+ QR++N+S DDAFA+LY +V+ADIEA LQKA++AS E
Sbjct: 1   MSVIDILTRVDSICKKYDKYDVQSQRDSNLSSDDAFAKLYASVDADIEALLQKADTASKE 60

Query: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
           K++AS VA+NAEIRRTKARLLEEVPKLQRLA+KKVKGLS++E  ARNDL LALPDRIQAI
Sbjct: 61  KSKASTVAINAEIRRTKARLLEEVPKLQRLAMKKVKGLSSQEFAARNDLALALPDRIQAI 120

Query: 121 PDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDGT AA KQSG W ASASR  IKFDSDG+FDDEYFQQTEESS FR+EYEMRKMKQDQGL
Sbjct: 121 PDGTPAASKQSGSWAASASRPGIKFDSDGKFDDEYFQQTEESSGFRKEYEMRKMKQDQGL 180

Query: 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
           DMI+EGLDTLKNMAHDMNEE+DRQVPLMDEIDTKVDRA++DLKNTNVRL+ TV Q+
Sbjct: 181 DMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDRASSDLKNTNVRLRDTVNQL 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2075054	266	SYP71 "syntaxin of plants 71"	0.979	0.887	0.794	5.2e-97
TAIR|locus:2078282	267	SYP72 "syntaxin of plants 72"	0.979	0.883	0.661	2.6e-79
DICTYBASE|DDB_G0288439	250	syn8B "putative t-SNARE family	0.788	0.76	0.241	4.8e-09
TAIR|locus:2014824	263	SNAP30 "soluble N-ethylmaleimi	0.755	0.692	0.247	8.8e-07
DICTYBASE|DDB_G0289063	271	DDB_G0289063 [Dictyostelium di	0.937	0.833	0.266	1.3e-06
ASPGD|ASPL0000095103	923	AN12172 [Emericella nidulans (	0.572	0.149	0.294	1.4e-05
CGD|CAL0001470	266	orf19.2411 [Candida albicans (	0.356	0.323	0.295	3.4e-05
TAIR|locus:2159426	300	SNAP33 "soluble N-ethylmaleimi	0.369	0.296	0.337	4.5e-05
UNIPROTKB|D4A1A9	889	Nin "Protein Nin" [Rattus norv	0.863	0.233	0.237	0.00031
UNIPROTKB|J9P6M2	2084	NIN "Uncharacterized protein"	0.863	0.099	0.233	0.00038

TAIR|locus:2075054 SYP71 "syntaxin of plants 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 189/238 (79%), Positives = 211/238 (88%)

Query:     1 MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
             M+VIDILTRVDSICKKYDKYDV+KQRE N+SGDDAFARLYGA E  IE AL+KAE  + E
Sbjct:     1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query:    61 KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
             KNRA+ VA+NAEIRRTKARL EEVPKLQRLA+K+VKGL+TEEL ARNDLVLALP RI+AI
Sbjct:    61 KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120

Query:   121 PDGTAAAPKQSGGWGASA--SRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQ 178
             PDGTA  PK +  W  S+  SR +IKFDSDGRFDD+YFQ++ ESSQFRQEYEMRK+KQ+Q
Sbjct:   121 PDGTAGGPKSTSAWTPSSTTSRPDIKFDSDGRFDDDYFQESNESSQFRQEYEMRKIKQEQ 180

Query:   179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
             GLDMISEGLD LKNMA DMNEE+DRQVPLMDEIDTKVDRAT+DLKNTNVRLK TV Q+
Sbjct:   181 GLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQL 238

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0008565 "protein transporter activity" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006605 "protein targeting" evidence=RCA

TAIR|locus:2078282 SYP72 "syntaxin of plants 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 158/239 (66%), Positives = 195/239 (81%)

Query:     1 MSVIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNE 60
             M VIDI+ RVD ICKKYDKYD++K RE   SGDDAF+RL+ ++++DIEA L+KAE AS E
Sbjct:     1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60

Query:    61 KNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAI 120
             KNRA+ VA+NAE+RRTKARL E+V KLQ+LA+KK+KGL+ EE  +R DLV+AL DR+QAI
Sbjct:    61 KNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAI 120

Query:   121 PDGTAAAPKQSGG-WG-ASASRTEIKFD-SDGRFDDEYFQQTEESSQFRQEYEMRKMKQD 177
             PDG     KQ+   WG ASA    IKFD S+   DD +FQQ+EESSQFRQEYEMR+ KQD
Sbjct:   121 PDGNEHGAKQANSDWGGASAPNKNIKFDMSEEDMDDGFFQQSEESSQFRQEYEMRRKKQD 180

Query:   178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV 236
             +GLD+ISEGLD LKN+A DMNEE+D+QVPLM+E++TKVD AT+DLKNTNVRLK  + Q+
Sbjct:   181 EGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGATSDLKNTNVRLKKQLVQM 239

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016020 "membrane" evidence=IEA

GO:0008565 "protein transporter activity" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

DICTYBASE|DDB_G0288439 syn8B "putative t-SNARE family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 150 (57.9 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 52/215 (24%), Positives = 106/215 (49%)

Query:    34 DAFARLYGAVEADIEAALQKAESASNEKNRASVVALN--AEIRRTKARLLEEVPKLQ-RL 90
             D   +L  ++ ADI+      E +  ++N   +V  N  A++R     +  E+ +LQ  L
Sbjct:    10 DNIVKLINSLTADIK------EYSIQQRNNPGIVQKNTPAKLRNGLVHITNEILRLQDSL 63

Query:    91 AIKKVKGLSTEELVARNDLV---LALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDS 147
                  + +  +EL+ R + V   +++ +++ +  D       Q      + +   I + S
Sbjct:    64 TYGNNRNIQEKELLRRKNKVESLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGY-S 122

Query:   148 DGRFDDEYFQQTEESSQF-------RQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEE 200
             + +F     ++TE + QF        Q++ MR+  QD+ LD++S+ +   KNMAH M+ E
Sbjct:   123 NRQFGKP--KETEATKQFDNQQLFTNQQHIMRE--QDESLDLLSQSIMRQKNMAHAMSNE 178

Query:   201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235
             +D+   ++D+++   D  +  L+N N R++ T+ Q
Sbjct:   179 LDQHNEMLDDVEIGTDAVSMRLRNANRRME-TIKQ 212

GO:0006810 "transport" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2014824 SNAP30 "soluble N-ethylmaleimide-sensitive factor adaptor protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 49/198 (24%), Positives = 88/198 (44%)

Query:    50 ALQKAESASNEKNRASVVALNAEIRRTKARLLE-------EVPKLQRLAIKKVKGLSTEE 102
             A+ KAE  +   N    +A   +IR   AR LE       ++ +   +A+   K LS  E
Sbjct:    70 AVYKAEETTKGVNNCLKIA--EDIRSDGARTLEMLHQQGEQINRTHEMAVDMDKDLSRGE 127

Query:   103 LVARN-DLVLALPDRIQAIPD--GTAAAPKQSGGWGAS--ASRTEIKFDSDGRFDDEYFQ 157
              +  N   + + P + +   +  G    P +      +    R ++   + GR   +   
Sbjct:   128 KLLNNLGGMFSKPWKPKKTKNITGPMITPDKPSKKSENHKEEREKLGLGAKGRSSSQ--P 185

Query:   158 QTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDR 217
               ++ +   Q+ E  K KQD GL  +S+ L  LK+MA DM  E+D+Q   +D +   VD 
Sbjct:   186 ALDQPTNALQKVEQEKAKQDDGLSDLSDILGDLKSMAVDMGSEIDKQNKALDHLGDDVDE 245

Query:   218 ATADLKNTNVRLKHTVTQ 235
               + ++  N R +H +++
Sbjct:   246 LNSRVQGANQRARHLLSK 263

GO:0005634 "nucleus" evidence=ISM

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0016192 "vesicle-mediated transport" evidence=RCA;TAS

GO:0000910 "cytokinesis" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

DICTYBASE|DDB_G0289063 DDB_G0289063 [Dictyostelium discoideum (taxid:44689)]

 Score = 132 (51.5 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 65/244 (26%), Positives = 102/244 (41%)

Query:     6 ILTRVDSICKK-YDKYDVEKQRETNVSGD-DAFARLYGAVEADI----EAALQKAES-AS 58
             ++ RV+ I K+  D  D  K ++ N  G  DAF  L   +  DI    E   ++ E+ AS
Sbjct:     4 LIKRVEKIQKECVDAAD--KNKQLNADGTTDAFTLLRRKIGLDIKGIRELIKERDEAEAS 61

Query:    59 NEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIK-----KVKGLSTEELVARNDLVLAL 113
                     V L+ ++R     +  E  KLQR+  K     K K     E   + DL    
Sbjct:    62 LGPGTVRTVQLSHQVRTAIIDVKGECNKLQRMHDKSEERYKRKNKENPEKQKKLDLTRET 121

Query:   114 PDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRK 173
              +   A         KQ GG G+     +    S      +     + +  F++   +R 
Sbjct:   122 CELAWAHVKELELQNKQRGGDGSKFIPRDHNQSSSNASGTKQLPDLD-NDDFKEL--LRN 178

Query:   174 MKQDQG-LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232
              KQ  G LD ISE L   +N+A++M +   RQ  L+D ++ K D     L+N N+RL   
Sbjct:   179 DKQIDGVLDQISEQLKITENIANEMGKAATRQGVLLDTLNDKADVLDEKLENINIRLGKM 238

Query:   233 VTQV 236
             +  +
Sbjct:   239 IKDI 242

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000095103 AN12172 [Emericella nidulans (taxid:162425)]

 Score = 131 (51.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 45/153 (29%), Positives = 71/153 (46%)

Query:    81 LEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASR 140
             +EEV + ++L +  V G   EE+  R +L+  + D      D   A   +S G    A  
Sbjct:   780 IEEVQRRRKL-VDDV-GKEIEEM--RGELMKVITDS-----DHAEAKATRSTGLPNPADF 830

Query:   141 TEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEE 200
              +   D D + +D Y+   E+  Q    +E     QD+ LD +   +  L+  A DM  E
Sbjct:   831 DDHGLDGDDQGED-YYAAMEQQRQMELMHE-----QDEQLDGVFRTVGNLRQQADDMGRE 884

Query:   201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233
             ++ Q  ++ EIDT  DR    L+N   RLKH +
Sbjct:   885 LEEQAIMIGEIDTLADRVGGKLQNGMSRLKHII 917

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0001470 orf19.2411 [Candida albicans (taxid:5476)]

 Score = 120 (47.3 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 26/88 (29%), Positives = 48/88 (54%)

Query:   144 KFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDR 203
             K D D     EY +   +   F Q ++   M+QDQ LD++ + +     M+ D+N E+D 
Sbjct:   152 KDDPDEDSSVEY-EDISDHQMFAQ-HQQTLMRQDQELDVLHQSISRQHMMSQDINHELDD 209

Query:   204 QVPLMDEIDTKVDRATADLKNTNVRLKH 231
             Q+ ++++++  VD +   L + N RL+H
Sbjct:   210 QLIILNDLEQGVDSSLGHLNSANTRLRH 237

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

TAIR|locus:2159426 SNAP33 "soluble N-ethylmaleimide-sensitive factor adaptor protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 30/89 (33%), Positives = 45/89 (50%)

Query:   140 RTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNE 199
             R ++  +S  R      +   ES+   Q  EM K KQD GL  +S+ L  LKNMA DM  
Sbjct:   205 REKLGLNSAPRGQSRTREPLPESADAYQRVEMEKAKQDDGLSDLSDILGELKNMAVDMGS 264

Query:   200 EVDRQVPLMDEIDTKVDRATADLKNTNVR 228
             E+++Q   +D +   VD     ++ +N R
Sbjct:   265 EIEKQNKGLDHLHDDVDELNFRVQQSNQR 293

GO:0005634 "nucleus" evidence=ISM

GO:0005484 "SNAP receptor activity" evidence=ISS;IPI

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0016192 "vesicle-mediated transport" evidence=RCA;TAS

GO:0000911 "cytokinesis by cell plate formation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009504 "cell plate" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=IEP

GO:0051707 "response to other organism" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0000910 "cytokinesis" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|D4A1A9 Nin "Protein Nin" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 0.00031, P = 0.00031
 Identities = 54/227 (23%), Positives = 105/227 (46%)

Query:     6 ILTRVDSICKKYDKY--DVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNR 63
             +L RVD + ++ +K   D++K  +            + A+E   E  L+K +    E+  
Sbjct:   372 LLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKER-- 429

Query:    64 ASVVALNAEIRRTKARLLEEVPKLQRLAIKK-VKGLSTEELVARNDLVLALPD--RIQ-- 118
               + AL  E+R+ + ++L++V K QR+ +++ ++   TEE   R+ L L+L +  R++  
Sbjct:   430 --IAALKNELRQEREQILQQVGK-QRVELEQEIEKAKTEENYIRDRLALSLKENNRLENE 486

Query:   119 AIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDD---EYFQQTEESSQFRQEYEMR-KM 174
              + +    A  ++       S   +  +  G  D    E+F Q E  +Q R EYE + ++
Sbjct:   487 LLENAEKLAEYENLTSKLQRSLENVLAEKFGDLDPSSAEFFLQEERLAQMRNEYEQQCRL 546

Query:   175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATAD 221
              QDQ +D +   L+  +     +   +  Q  L +E+D   D    D
Sbjct:   547 LQDQ-VDELQSELEEYQAQGRVLR--LPCQNALSEELDGHGDGIEQD 590

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J9P6M2 NIN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 122 (48.0 bits), Expect = 0.00038, P = 0.00038
 Identities = 53/227 (23%), Positives = 104/227 (45%)

Query:     6 ILTRVDSICKKYDKY--DVEKQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNR 63
             +L RVD + ++ +K   D++K  +            + A+E   E  L+K +    E+  
Sbjct:   367 LLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKER-- 424

Query:    64 ASVVALNAEIRRTKARLLEEVPKLQRLAIKK-VKGLSTEELVARNDLVLALPD--RIQ-- 118
               + AL  E+R+ + ++L++V K QRL +++ ++   TEE   R+ L L+L +  R++  
Sbjct:   425 --IAALKNELRKEREQILQQVGK-QRLELEQEIEKAKTEENYIRDRLALSLKENSRLENE 481

Query:   119 AIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDD---EYFQQTEESSQFRQEYEMR-KM 174
              + +    A  ++       +   +  +  G  D    E+F Q E  +Q R EYE + ++
Sbjct:   482 LLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYEQQCRV 541

Query:   175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATAD 221
              QDQ +D +   L+  +     +   +     L +E+D   D    D
Sbjct:   542 LQDQ-VDELQSELEEFRTQGKVLRLPLKNS--LSEELDVSRDCVEPD 585

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SF29	SYP71_ARATH	No assigned EC number	0.7941	0.9792	0.8872	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023175001 SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (265 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
pfam05739	62	pfam05739, SNARE, SNARE domain	8e-12
cd00193	60	cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se	3e-07
smart00397	66	smart00397, t_SNARE, Helical region found in SNARE	1e-06

>gnl|CDD|203323 pfam05739, SNARE, SNARE domain

 Score = 58.3 bits (142), Expect = 8e-12
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231
           +D+ L+ +   +  LK +  DM EEV+ Q  L+D ID  VD   + ++  N RLK 
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKK 56

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62

>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231
           +D+ L+ +   +  LK +  D+  EV+ Q  L+D I+  VD A  ++K  N RLK 
Sbjct: 4   RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59

Length = 60

>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226
           Q+   R+ ++D+ L+ + + +  LK +  DM  E++ Q   +D I+  VD A  +LK  N
Sbjct: 1   QQALAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60

Query: 227 VRLKH 231
            RLK 
Sbjct: 61  KRLKK 65

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	99.94
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	99.39
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	99.16
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	99.09
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	99.09
PF09177	97	Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP	98.96
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	98.45
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	97.23
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	96.93
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	96.63
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	96.04
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	95.47
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	95.41
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	95.31
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	92.44
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	92.06
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	91.09
PF01519	102	DUF16: Protein of unknown function DUF16; InterPro	86.17
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	80.68

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.4e-25  Score=190.43  Aligned_cols=202  Identities=22%  Similarity=0.275  Sum_probs=143.8

Q ss_pred             CCCCChHHHHHHHHHHH---HHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHH--hcCCCHHHHH
Q 026244           30 VSGDDAFARLYGAVEAD---IEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKK--VKGLSTEELV  104 (241)
Q Consensus        30 ~~~~DpF~~~~~d~~~~---l~~~~~~~~~~~~~~n~~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~--~~~l~~~E~~  104 (241)
                      .+..|||.++|.++...   +..+.++..++... ..+........||+.+..+.++|..+...+.+.  .++++..|+.
T Consensus         2 ~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~-~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~   80 (235)
T KOG3202|consen    2 LSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKD-TGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELS   80 (235)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHH
Confidence            46789999999997754   44444444332211 134455667888877777777777776665433  3579999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCccccccCCCCCC-Cchhh-hcchh-hHHHHHHHHHHHHhhhhhHH
Q 026244          105 ARNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRF-DDEYF-QQTEE-SSQFRQEYEMRKMKQDQGLD  181 (241)
Q Consensus       105 rR~~~v~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~-~~te~-t~~~~q~~qq~~~eQD~~Ld  181 (241)
                      +|+.+|.+++.++.+|+..+....-.+     ...+..+.....++. ..... ..... .+...+.|++++++||++||
T Consensus        81 ~R~~~i~~lr~q~~~~~~~~~~~~~~~-----~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld  155 (235)
T KOG3202|consen   81 RRRRFIDNLRTQLRQMKSKMAMSGFAN-----SNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLD  155 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccc-----ccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999886511000     011222221111110 00010 11111 23344666889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244          182 MISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT  238 (241)
Q Consensus       182 ~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~  238 (241)
                      .|+.+|+++|+||..||+||++|+.|||++++.||+|.+||+++++++.++.. +.+
T Consensus       156 ~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s  211 (235)
T KOG3202|consen  156 GLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MAS  211 (235)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence            99999999999999999999999999999999999999999999999999998 654

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=99.39  E-value=2.9e-12  Score=89.31  Aligned_cols=62  Identities=35%  Similarity=0.597  Sum_probs=59.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244          175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV  236 (241)
Q Consensus       175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~  236 (241)
                      +||+.|+.|+.+|.+|++|+..||.||++|+++||.|+..||.+..+|..++++|+++.+..
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~   62 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999999999999999999999999998764

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=6.4e-11  Score=105.09  Aligned_cols=62  Identities=37%  Similarity=0.483  Sum_probs=59.2

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHH
Q 026244          172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV  233 (241)
Q Consensus       172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l  233 (241)
                      .-.++|++|++|+.++++||+||.+||.||+.||+.||.|.++||+.+.+|..+|+|+++|+
T Consensus       212 ~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl  273 (273)
T KOG3065|consen  212 AEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL  273 (273)
T ss_pred             hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence            34489999999999999999999999999999999999999999999999999999999975

>smart00397 t_SNARE Helical region found in SNAREs

Probab=99.09  E-value=5.3e-10  Score=77.59  Aligned_cols=62  Identities=31%  Similarity=0.501  Sum_probs=59.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHH
Q 026244          170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH  231 (241)
Q Consensus       170 qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~  231 (241)
                      .+++.++|+.|+.|+.+|..+++++..||.||..|+++||.++..+|.+...+..+++++++
T Consensus         4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~   65 (66)
T smart00397        4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            56789999999999999999999999999999999999999999999999999999999876

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=99.09  E-value=4.1e-10  Score=76.89  Aligned_cols=58  Identities=33%  Similarity=0.548  Sum_probs=56.2

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHH
Q 026244          174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH  231 (241)
Q Consensus       174 ~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~  231 (241)
                      +++|+.|+.|+.+|..|++|+..||.||..|+++||.|+..||.+..++..+++++.+
T Consensus         2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k   59 (60)
T cd00193           2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK   59 (60)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999999976

>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle

Probab=98.96  E-value=1.3e-08  Score=77.27  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=71.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhhhch----hhHHHHHHHHHHHHHHHHhhHhHHHHHHHHH-----hcCCCHHHHH
Q 026244           34 DAFARLYGAVEADIEAALQKAESASNEKNR----ASVVALNAEIRRTKARLLEEVPKLQRLAIKK-----VKGLSTEELV  104 (241)
Q Consensus        34 DpF~~~~~d~~~~l~~~~~~~~~~~~~~n~----~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~-----~~~l~~~E~~  104 (241)
                      |||..|..+|.+.|..+....+.....++.    +.......+++..+..+..+|.+|++++...     .++|++.|+.
T Consensus         1 DPF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~   80 (97)
T PF09177_consen    1 DPFFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEIS   80 (97)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHH
Confidence            899999999999999987766665544433    3456678999999999999999999996422     3589999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 026244          105 ARNDLVLALPDRIQAIP  121 (241)
Q Consensus       105 rR~~~v~~L~~~i~~l~  121 (241)
                      +|+.||..++.+|..|+
T Consensus        81 ~Rr~fv~~~~~~i~~~k   97 (97)
T PF09177_consen   81 RRRQFVSAIRNQIKQMK   97 (97)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999999874

Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=4.6e-07  Score=70.04  Aligned_cols=62  Identities=24%  Similarity=0.396  Sum_probs=58.9

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244          174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ  235 (241)
Q Consensus       174 ~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k  235 (241)
                      +|=|+.++.|..-|..||.++..||+|++.||++||.+++++|.|.+.|..++.|++.+-+.
T Consensus        32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~   93 (118)
T KOG3385|consen   32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR   93 (118)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc
Confidence            57788999999999999999999999999999999999999999999999999999988765

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.14  Score=45.87  Aligned_cols=235  Identities=17%  Similarity=0.226  Sum_probs=136.6

Q ss_pred             ChHHHHHHHHHHHHhhhhhcch-hhhhc------cCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhh-------chh-h
Q 026244            1 MSVIDILTRVDSICKKYDKYDV-EKQRE------TNVSGDDAFARLYGAVEADIEAALQKAESASNEK-------NRA-S   65 (241)
Q Consensus         1 ~~~~d~~~r~~~~~~k~~~~~~-~~~~~------~~~~~~DpF~~~~~d~~~~l~~~~~~~~~~~~~~-------n~~-~   65 (241)
                      ||..|=-.=..+.|+.|.+-.+ ...+.      ...+..-.|.+.-.-+..+|..+-++++.++...       ++| .
T Consensus         1 m~~rDRT~Ef~~~~~s~~~r~~~~~~~~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~Ve   80 (311)
T KOG0812|consen    1 MSFRDRTSEFQAAVKSLKKRNATRGVNQADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPVE   80 (311)
T ss_pred             CCcchhhHHHHHHHHHHHHHhhccccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchh
Confidence            5555555556788999988432 11111      1123335799998888888888766554433221       244 4


Q ss_pred             HHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHhhhhhh--------------------
Q 026244           66 VVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEE-LVARNDLVLALPDRIQAIPDGT--------------------  124 (241)
Q Consensus        66 ~~~~~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~E-~~rR~~~v~~L~~~i~~l~~~~--------------------  124 (241)
                      +..+..-|+..+..|...|.+|.... +..+.++..- ..-=+..|-.|.+.+..+...+                    
T Consensus        81 I~eLT~iikqdi~sln~~i~~Lqei~-~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dk  159 (311)
T KOG0812|consen   81 IQELTFIIKQDITSLNSQIAQLQEIV-KANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDK  159 (311)
T ss_pred             hHHHHHHHhcchHHHHHHHHHHHHHH-HHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHH
Confidence            67788999999999999999998774 3444555321 2233445555555444432211                    


Q ss_pred             -ccC-CCCCC-CCCCCCCccccc---cCCCCCCCch-hhh---cchhhHHHHHHHHHHHHhhhh-------hHHHHHHHH
Q 026244          125 -AAA-PKQSG-GWGASASRTEIK---FDSDGRFDDE-YFQ---QTEESSQFRQEYEMRKMKQDQ-------GLDMISEGL  187 (241)
Q Consensus       125 -~~~-~~~~~-~~~~~~~~~~l~---~~~~~~~~~~-~~~---~te~t~~~~q~~qq~~~eQD~-------~Ld~l~~~v  187 (241)
                       +.+ +.-++ ....+..+....   .+..+..... .+.   +.+.++   +++-+++.++|+       .+..|+.+|
T Consensus       160 fs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~q---qqQm~ll~es~~Y~Q~R~~~~q~IEstI  236 (311)
T KOG0812|consen  160 FSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNPQ---QQQMALLDESDEYVQERAKTMQNIESTI  236 (311)
T ss_pred             hccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             110 00000 000000011100   0000000000 000   011111   122233555554       456788889


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhccc
Q 026244          188 DTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTF  239 (241)
Q Consensus       188 ~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~~  239 (241)
                      ..|.+|=..+-.=+.+|.+++..||+.||.+..-+..|..-|-+....+.|.
T Consensus       237 sElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSN  288 (311)
T KOG0812|consen  237 SELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSN  288 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999888653

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.28  Score=43.91  Aligned_cols=69  Identities=14%  Similarity=0.252  Sum_probs=62.7

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244          170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT  238 (241)
Q Consensus       170 qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~  238 (241)
                      ..++++-.+.+..|...|..+.+|=..+|.=+.+|.+++|.|+..|+.+...+..++..|.+-.+.=|+
T Consensus       172 ~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~  240 (269)
T KOG0811|consen  172 LDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRK  240 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446788899999999999999999999999999999999999999999999999999999987765433

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.2  Score=45.53  Aligned_cols=59  Identities=20%  Similarity=0.294  Sum_probs=53.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244          178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV  236 (241)
Q Consensus       178 ~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~  236 (241)
                      ..+-.|..+|..|+++=.+|-..++.|.+|||+|+..|.++..-+..++..+++-+..-
T Consensus       206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~q  264 (297)
T KOG0810|consen  206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQ  264 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999998665443

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=96.04  E-value=0.13  Score=35.63  Aligned_cols=61  Identities=16%  Similarity=0.249  Sum_probs=54.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244          175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ  235 (241)
Q Consensus       175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k  235 (241)
                      +....|+.-...+...-++|..+-.+|..|.+.|..+..+++.+.+.|..+++-++.+-.+
T Consensus         5 ~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR   65 (66)
T PF12352_consen    5 RESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR   65 (66)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence            4455888888999999999999999999999999999999999999999999888877654

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=95.47  E-value=0.15  Score=44.90  Aligned_cols=73  Identities=15%  Similarity=0.209  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244          164 QFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV  236 (241)
Q Consensus       164 ~~~q~~qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~  236 (241)
                      .++...+.....|++--++|..-...||+.+.++++=|..-+.+|+.....+|+....|..++.||+....+.
T Consensus       153 ~~e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~  225 (251)
T PF09753_consen  153 SLEKILQHHRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKS  225 (251)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333445557789999999999999999999999999999999999999999999999999999999986543

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.41  E-value=1.4  Score=39.68  Aligned_cols=196  Identities=16%  Similarity=0.197  Sum_probs=114.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh--hhhc-hhhHH---HHHHHHHHHHHHHHhhHhHHHHHHHH--Hh-cCCCHHHHHH
Q 026244           35 AFARLYGAVEADIEAALQKAESAS--NEKN-RASVV---ALNAEIRRTKARLLEEVPKLQRLAIK--KV-KGLSTEELVA  105 (241)
Q Consensus        35 pF~~~~~d~~~~l~~~~~~~~~~~--~~~n-~~~~~---~~~~eir~~l~~L~e~l~~L~~~l~~--~~-~~l~~~E~~r  105 (241)
                      .|..+..++...|..+..+++...  +.++ .|+-.   .-..+|...-..+...+.+=++.+..  ++ ...++.|.--
T Consensus        58 ~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~  137 (305)
T KOG0809|consen   58 AWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLL  137 (305)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHH
Confidence            477677777777777766654422  1222 22211   11244444444444444444444432  22 2368899999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccC--------CCCCC-C-CCCCCCccccccCCCCCCCchhhhcchhhHHHH--HHHHHHH
Q 026244          106 RNDLVLALPDRIQAIPDGTAAA--------PKQSG-G-WGASASRTEIKFDSDGRFDDEYFQQTEESSQFR--QEYEMRK  173 (241)
Q Consensus       106 R~~~v~~L~~~i~~l~~~~~~~--------~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~te~t~~~~--q~~qq~~  173 (241)
                      |+++...+-..+..+...|-..        .+... + ..-.+..+.+..    +...++...+....++.  ..-..+.
T Consensus       138 ~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~----~dd~d~~~~~~qe~ql~~~e~~~~~~  213 (305)
T KOG0809|consen  138 RKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDL----PDDEDFSDRTFQEQQLMLFENNEEVV  213 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccC----cchhhhhhhhHHHHHHHHHhcchHHH
Confidence            9999999988888886655321        00000 0 000000011000    00111111111111110  0011235


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHH
Q 026244          174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT  234 (241)
Q Consensus       174 ~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~  234 (241)
                      .+-++..-.|.++|-.|-.|=.+|+.=+-+|+-++|.||-.|+.|..++..|.+.+.|.-.
T Consensus       214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~  274 (305)
T KOG0809|consen  214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAER  274 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHH
Confidence            5668889999999999999999999999999999999999999999999999999987543

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=95.31  E-value=0.12  Score=46.01  Aligned_cols=66  Identities=23%  Similarity=0.382  Sum_probs=61.2

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhc
Q 026244          172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVM  237 (241)
Q Consensus       172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r  237 (241)
                      +..+-|+.+..|+.+|..|-.|=.+||.=+.+|+++.|.||-.++.|...+++|++.|.+...--|
T Consensus       189 l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqr  254 (283)
T COG5325         189 LITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQR  254 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHh
Confidence            477889999999999999999999999999999999999999999999999999999988765443

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=92.44  E-value=0.54  Score=41.13  Aligned_cols=62  Identities=23%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhccc
Q 026244          178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTF  239 (241)
Q Consensus       178 ~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~~  239 (241)
                      +.|-.|..+|..|-++=..|.+++-+|.++.|-|++.+..+...+..++.-+.+-++.+|.+
T Consensus       185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa  246 (280)
T COG5074         185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA  246 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH
Confidence            34778999999999999999999999999999999999999999999999999999998865

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.06  E-value=7.6  Score=33.76  Aligned_cols=59  Identities=17%  Similarity=0.205  Sum_probs=52.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244          178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV  236 (241)
Q Consensus       178 ~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~  236 (241)
                      .+|+.-...|..+=.+|.+=-+-+..|+-+|..+..+|-.+..|+-..|.-+.++-.|=
T Consensus       149 ~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kk  207 (231)
T KOG3208|consen  149 DHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKK  207 (231)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            46777777888888899999999999999999999999999999999999888876654

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.09  E-value=8.8  Score=33.18  Aligned_cols=158  Identities=16%  Similarity=0.177  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCC-CCCCCCcccc
Q 026244           65 SVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPDGTAAAPKQSGG-WGASASRTEI  143 (241)
Q Consensus        65 ~~~~~~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~E~~rR~~~v~~L~~~i~~l~~~~~~~~~~~~~-~~~~~~~~~l  143 (241)
                      .+...-.+|.+.+.++.+-+..|...+.  ....++..-.+++  +.+++.++..+..++....++... +.....+..+
T Consensus        30 e~~~v~~~i~~sI~~~~s~~~rl~~~~~--~epp~~rq~~rlr--~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~l  105 (213)
T KOG3251|consen   30 EVSAVENSIQRSIDQYASRCQRLDVLVS--KEPPKSRQAARLR--VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVEL  105 (213)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHHhHhh--cCCCCcHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4455667888888888888888877643  2345556666666  888888888887665432111100 0000012222


Q ss_pred             ccCCCCCCCchhhhcchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHH
Q 026244          144 KFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK  223 (241)
Q Consensus       144 ~~~~~~~~~~~~~~~te~t~~~~q~~qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~  223 (241)
                      ...   ++..   .++..+.+|+.++     .-+..|..-+..|..+=.+|..|=+-|-+|+-.|-....+|-...+.|.
T Consensus       106 L~~---~~~~---~~~~~~~~~D~el-----~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLG  174 (213)
T KOG3251|consen  106 LDR---RFTN---GATGTSIPFDEEL-----QENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLG  174 (213)
T ss_pred             hcC---CCCC---CCccCCCcchHHH-----HhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            211   1111   0111122343222     2233455555666666677888888888888888888888877777776


Q ss_pred             HHHHHHHHHHHHhc
Q 026244          224 NTNVRLKHTVTQVM  237 (241)
Q Consensus       224 ~~~~r~~~~l~k~r  237 (241)
                      -.|.-|.-|-+.+|
T Consensus       175 lSn~ti~lIeRR~~  188 (213)
T KOG3251|consen  175 LSNQTIRLIERRVR  188 (213)
T ss_pred             CcHHHHHHHHHHHH
Confidence            66665555544443

>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function

Probab=86.17  E-value=5.3  Score=30.52  Aligned_cols=50  Identities=14%  Similarity=0.194  Sum_probs=39.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHH
Q 026244          175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN  224 (241)
Q Consensus       175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~  224 (241)
                      .|-++++.|...|..+.+.=.....|++.|++.|+-|...+...+.||.+
T Consensus        50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~   99 (102)
T PF01519_consen   50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK   99 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            67788888888888888888888888888888888887777666666654

It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=80.68  E-value=27  Score=27.77  Aligned_cols=61  Identities=18%  Similarity=0.297  Sum_probs=49.7

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244          172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT  232 (241)
Q Consensus       172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~  232 (241)
                      ..++.-+.||.+...+..+.++...|.+|+..=..=+..+..+++.++..+...-.|+..+
T Consensus        62 tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i  122 (126)
T PF07889_consen   62 TKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI  122 (126)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666778888888888888999999999988888888888888888888887777777655

The region featured in this family is approximately 100 amino acids long.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	3e-17
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	7e-16
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	2e-11
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	6e-09
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	3e-08
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	3e-06

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87

 Score = 73.0 bits (179), Expect = 3e-17
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 157 QQTEESSQFRQEY--EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTK 214
           +Q   S  F +    + R+ + D+ L+ +S  +  L++MA DM  E+D Q   +D I  K
Sbjct: 6   EQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEK 65

Query: 215 VDRATADLKNTNVRLKH 231
            D     +   N R   
Sbjct: 66  ADSNKTRIDEANQRATK 82

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66

 Score = 69.0 bits (169), Expect = 7e-16
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRL 229
             R+ + D+ L+ +S  +  L++MA DM  E+D Q   +D I  K D     +   N R 
Sbjct: 2   SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 61

Query: 230 KH 231
             
Sbjct: 62  TK 63

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82

 Score = 57.5 bits (139), Expect = 2e-11
 Identities = 13/57 (22%), Positives = 31/57 (54%)

Query: 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231
            QD+ L+++S  +  LKNM+  +  E++ Q  ++++   +++   + L N   +L  
Sbjct: 16  MQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAK 72

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 87

 Score = 50.8 bits (121), Expect = 6e-09
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRL 229
           + R+   +  +  +S  +  L+NMA DM  E+  Q   +D I  K +   + +   N + 
Sbjct: 22  DAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKA 81

Query: 230 KH 231
             
Sbjct: 82  TK 83

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65

 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230
           +QD GLD +S  +   K M  ++  E+D Q  ++D++   V+     L+    R+ 
Sbjct: 6   EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVT 61

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Length = 64

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231
           D+ LD I +  + LK MA    +E+D Q   ++ I+   D    +L     RL  
Sbjct: 9   DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	99.78
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	99.73
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	99.68
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	99.68
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	99.66
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	99.6
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	99.14
2c5k_T	95	Syntaxin TLG1, T-snare affecting A late golgi comp	99.13
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	97.83
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	97.18
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	97.14
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	97.02
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	96.85
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	96.84
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	96.72
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	96.63
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	96.33
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	95.02
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	93.1
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	92.14
2nps_C	81	Vesicle transport through interaction with T- snar	91.49
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	91.07
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	88.19
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	82.7

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=99.78  E-value=5.9e-19  Score=129.17  Aligned_cols=72  Identities=18%  Similarity=0.321  Sum_probs=60.5

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244          167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT  238 (241)
Q Consensus       167 q~~qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~  238 (241)
                      |.|++++++||+.||.|+.+|++||+||.+||+||+.||+|||+|+++||++..+|..+++|+++++++.++
T Consensus         8 q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~   79 (82)
T 2nps_D            8 TGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSD   79 (82)
T ss_dssp             ----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            667788999999999999999999999999999999999999999999999999999999999999998754

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.73  E-value=4.8e-18  Score=118.98  Aligned_cols=64  Identities=23%  Similarity=0.399  Sum_probs=53.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHH
Q 026244          171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT  234 (241)
Q Consensus       171 q~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~  234 (241)
                      ++|++||++||.|+.+|++||++|.+||+||+.||+|||+|+++||++..+|..+++|+++|++
T Consensus         2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k   65 (65)
T 1gl2_D            2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR   65 (65)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4689999999999999999999999999999999999999999999999999999999999864

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.68  E-value=7.2e-17  Score=119.29  Aligned_cols=65  Identities=28%  Similarity=0.408  Sum_probs=61.5

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244          171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ  235 (241)
Q Consensus       171 q~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k  235 (241)
                      .+..+||+.||.|+.+|++||+||.+||+||+.||++||+|+++||+++.+|..+++|+++|+++
T Consensus        22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k   86 (87)
T 1sfc_D           22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS   86 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            35779999999999999999999999999999999999999999999999999999999999865

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=99.68  E-value=7.3e-17  Score=113.26  Aligned_cols=62  Identities=29%  Similarity=0.436  Sum_probs=59.8

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHH
Q 026244          172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV  233 (241)
Q Consensus       172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l  233 (241)
                      +..+||+.|+.|+.+|++||+||.+||+||+.||++||+|+++||+++.+|..+++|+++++
T Consensus         4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll   65 (66)
T 1n7s_D            4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence            35689999999999999999999999999999999999999999999999999999999986

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.66  E-value=9.8e-17  Score=118.52  Aligned_cols=64  Identities=22%  Similarity=0.371  Sum_probs=60.0

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244          172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ  235 (241)
Q Consensus       172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k  235 (241)
                      +..+||++||.|+.+|++||+||.+||+||+.||++||+|+++||+++.+|..+|+|+++|+++
T Consensus        24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k   87 (87)
T 1l4a_D           24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN   87 (87)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3568999999999999999999999999999999999999999999999999999999999874

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.2e-15  Score=105.00  Aligned_cols=61  Identities=26%  Similarity=0.358  Sum_probs=58.2

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244          172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT  232 (241)
Q Consensus       172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~  232 (241)
                      +-.+||+.|+.|+.+|++||+||.+||+||+.||++||.|+.+||+++.+|..+++||+++
T Consensus         4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i   64 (64)
T 3b5n_D            4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI   64 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            3568999999999999999999999999999999999999999999999999999999864

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=99.14  E-value=6.3e-10  Score=87.72  Aligned_cols=94  Identities=16%  Similarity=0.131  Sum_probs=76.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhhhhh------chhhHHHHHHHHHHHHHHHHhhHhHHHHHHHH-----HhcCCCH
Q 026244           32 GDDAFARLYGAVEADIEAALQKAESASNEK------NRASVVALNAEIRRTKARLLEEVPKLQRLAIK-----KVKGLST  100 (241)
Q Consensus        32 ~~DpF~~~~~d~~~~l~~~~~~~~~~~~~~------n~~~~~~~~~eir~~l~~L~e~l~~L~~~l~~-----~~~~l~~  100 (241)
                      ..|||..|..||...|..+..........+      +++.......+|+..+..+..+|.+|.+++..     ..++|++
T Consensus        25 ~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~  104 (130)
T 4dnd_A           25 LEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPA  104 (130)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCH
Confidence            469999999999999999877666654332      23345677899999999999999999999642     2368999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhc
Q 026244          101 EELVARNDLVLALPDRIQAIPDGTA  125 (241)
Q Consensus       101 ~E~~rR~~~v~~L~~~i~~l~~~~~  125 (241)
                      .|+.+|+.||.+++.+|..|+..++
T Consensus       105 ~Ei~~Rr~fV~~~r~~I~~mk~~l~  129 (130)
T 4dnd_A          105 GDLQERKVFVERMREAVQEMKDHMV  129 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998764

>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T

Probab=99.13  E-value=1.3e-10  Score=86.85  Aligned_cols=88  Identities=16%  Similarity=0.196  Sum_probs=72.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 026244           33 DDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLA  112 (241)
Q Consensus        33 ~DpF~~~~~d~~~~l~~~~~~~~~~~~~~n~~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~~~~l~~~E~~rR~~~v~~  112 (241)
                      .|||.+|++|+.++|..+...+.+    ++.++......+++..+..|.++|.+|.+++....+. ++.|+.+|+.||.+
T Consensus         5 ~DPF~~V~~D~~~ql~~l~~~~~~----~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v~~   79 (95)
T 2c5k_T            5 EDPFQQVVKDTKEQLNRINNYITR----HNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQVKN   79 (95)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHH----TCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHH----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence            599999999999999999877554    2222223567999999999999999999997533333 99999999999999


Q ss_pred             HHHHHHhhhhhhc
Q 026244          113 LPDRIQAIPDGTA  125 (241)
Q Consensus       113 L~~~i~~l~~~~~  125 (241)
                      ++.+++.|+..++
T Consensus        80 l~~~i~~lk~~~~   92 (95)
T 2c5k_T           80 IKQQLDALKLRFD   92 (95)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=97.83  E-value=0.00012  Score=55.63  Aligned_cols=66  Identities=18%  Similarity=0.217  Sum_probs=60.8

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhc
Q 026244          172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVM  237 (241)
Q Consensus       172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r  237 (241)
                      ..++.++.+..|..++..|+++-..|+..+.+|.++||.++..|+.+...+..+++.+++-.+.-+
T Consensus        15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk   80 (109)
T 3hd7_B           15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS   80 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788899999999999999999999999999999999999999999999999999988765543

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=97.18  E-value=0.0035  Score=43.67  Aligned_cols=63  Identities=11%  Similarity=0.239  Sum_probs=57.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhccc
Q 026244          177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMTF  239 (241)
Q Consensus       177 D~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~~  239 (241)
                      .+.+..|..+|..|.+|=..|..=+.+|.++||.|+..|+.+...+..++..|.+-.+.-+++
T Consensus         5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~   67 (71)
T 2nps_B            5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKS   67 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456788999999999999999999999999999999999999999999999999887766554

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=97.14  E-value=0.0039  Score=44.08  Aligned_cols=66  Identities=18%  Similarity=0.216  Sum_probs=57.8

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244          173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT  238 (241)
Q Consensus       173 ~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~  238 (241)
                      .++-.+.+..|..+|..|++|=..|..=+.+|.++||.|+..|+.+...+..++..+++-.+.-++
T Consensus         5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~   70 (77)
T 1jth_B            5 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK   70 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345567788999999999999999999999999999999999999999999999999987765544

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=97.02  E-value=0.0087  Score=41.42  Aligned_cols=63  Identities=24%  Similarity=0.259  Sum_probs=57.0

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244          173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ  235 (241)
Q Consensus       173 ~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k  235 (241)
                      .++-...+..|..+|..|++|=..|..=+.+|.++||.|+..|+.+...+..++..+++-.+.
T Consensus         5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~   67 (69)
T 3b5n_B            5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKS   67 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445567788999999999999999999999999999999999999999999999999886653

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=96.85  E-value=0.01  Score=42.62  Aligned_cols=66  Identities=18%  Similarity=0.216  Sum_probs=59.1

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhcc
Q 026244          173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVMT  238 (241)
Q Consensus       173 ~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r~  238 (241)
                      .++-.+.+..|..+|..|++|=..|..=+.+|.++||.|+..|+.+...+..++..+++-.+.-++
T Consensus        16 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~   81 (83)
T 1sfc_B           16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence            555667789999999999999999999999999999999999999999999999999987765544

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=96.84  E-value=0.007  Score=41.42  Aligned_cols=57  Identities=14%  Similarity=0.360  Sum_probs=52.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHH
Q 026244          175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH  231 (241)
Q Consensus       175 eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~  231 (241)
                      +-...+..|..+|..|++|=..|..=+.+|.++||.|+..|+.+...+..++..+++
T Consensus         6 eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k   62 (65)
T 1gl2_B            6 ERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR   62 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667899999999999999999999999999999999999999999999998876

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=96.72  E-value=0.015  Score=40.05  Aligned_cols=60  Identities=18%  Similarity=0.242  Sum_probs=54.8

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244          173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT  232 (241)
Q Consensus       173 ~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~  232 (241)
                      .++-.+.+-.|..+|..|.+|=..|..=+.+|.++||.|+..|+.+...+..++..+++-
T Consensus         7 i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA   66 (68)
T 1n7s_B            7 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567788999999999999999999999999999999999999999999999988763

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=96.63  E-value=0.011  Score=51.39  Aligned_cols=196  Identities=13%  Similarity=0.122  Sum_probs=99.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhhh----chhh----------HHHHHHHHHHHHHHHHhhHhHHHHHHHHH--h--
Q 026244           34 DAFARLYGAVEADIEAALQKAESASNEK----NRAS----------VVALNAEIRRTKARLLEEVPKLQRLAIKK--V--   95 (241)
Q Consensus        34 DpF~~~~~d~~~~l~~~~~~~~~~~~~~----n~~~----------~~~~~~eir~~l~~L~e~l~~L~~~l~~~--~--   95 (241)
                      +.|.....++...|..+...+..+....    ..|.          +..+..+|......+...|..|.......  .  
T Consensus        44 ~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~  123 (279)
T 2xhe_B           44 ADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGT  123 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            3588888888888777755544332221    1111          12233444444444555555555442210  0  


Q ss_pred             --cCCCHHHHHHHHHHHHHHHHHHHhhhhhhccC-----------CCCCCCCCCCCCccccccCCCCCCCchhhhcchhh
Q 026244           96 --KGLSTEELVARNDLVLALPDRIQAIPDGTAAA-----------PKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEES  162 (241)
Q Consensus        96 --~~l~~~E~~rR~~~v~~L~~~i~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~te~t  162 (241)
                        .+-+..|..-|+..+..|..++..+...|...           ..+.....+    +...     ........++...
T Consensus       124 ~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~----~~~~-----~ee~~~~~e~g~~  194 (279)
T 2xhe_B          124 FEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVE----PSLS-----DDAIQKVIEHGTE  194 (279)
T ss_dssp             CSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSC----CCCS-----STTHHHHHHHC--
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCC-----HHHHHHHHhCCch
Confidence              11222267789999999999988876654320           000000000    0000     0000000011111


Q ss_pred             HHHHH----HHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 026244          163 SQFRQ----EYE---MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ  235 (241)
Q Consensus       163 ~~~~q----~~q---q~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k  235 (241)
                      ..|.+    ..+   ..+++=.+.+-.|..+|..|++|=..|+.=+.+|.++||.|+..|+.+...+..++..|.+-.+.
T Consensus       195 ~~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~  274 (279)
T 2xhe_B          195 GIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHY  274 (279)
T ss_dssp             ---------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12221    000   12445577899999999999999999999999999999999999999999999999999876654


Q ss_pred             hcc
Q 026244          236 VMT  238 (241)
Q Consensus       236 ~r~  238 (241)
                      -++
T Consensus       275 qk~  277 (279)
T 2xhe_B          275 QES  277 (279)
T ss_dssp             ---
T ss_pred             hHc
Confidence            443

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=96.33  E-value=0.041  Score=47.68  Aligned_cols=197  Identities=14%  Similarity=0.183  Sum_probs=107.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhhhc----h--------hhHHHHHHHHHHHHHHHHhhHhHHHHHHHHH-hcCCCH
Q 026244           34 DAFARLYGAVEADIEAALQKAESASNEKN----R--------ASVVALNAEIRRTKARLLEEVPKLQRLAIKK-VKGLST  100 (241)
Q Consensus        34 DpF~~~~~d~~~~l~~~~~~~~~~~~~~n----~--------~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~-~~~l~~  100 (241)
                      +.|.....++...|..+......+....+    .        .....+..+|......+...|..|...+... ...-++
T Consensus        31 ~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~  110 (267)
T 1dn1_B           31 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS  110 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Confidence            66777777777777776544433221111    1        1123334555555555566666665553211 123456


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccC-------C-----C---CCCCCCCCCCccccc----cCCCCCCCchhhhcchh
Q 026244          101 EELVARNDLVLALPDRIQAIPDGTAAA-------P-----K---QSGGWGASASRTEIK----FDSDGRFDDEYFQQTEE  161 (241)
Q Consensus       101 ~E~~rR~~~v~~L~~~i~~l~~~~~~~-------~-----~---~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~te~  161 (241)
                      .+.+-|+..+..|..++.++...+...       .     +   -.+ ..+  +...+.    .+...-+......++..
T Consensus       111 ~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~-~~~--tdeeie~~ie~g~~~~f~q~~l~~~~~  187 (267)
T 1dn1_B          111 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITG-RTT--TSEELEDMLESGNPAIFASGIIMDSSI  187 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCC--CHHHHHHHHHTCSSCTTTTTCCCCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccC-CCC--CHHHHHHHHhCCcHHHHHHHHHHhhHH
Confidence            778889999999999888875554321       0     0   000 000  001110    00000010000011111


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHhc
Q 026244          162 SSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQVM  237 (241)
Q Consensus       162 t~~~~q~~qq~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~r  237 (241)
                      +.    ..-...++-...+-.|..+|..|++|=..|+.=+.+|+++||.|+..|+.+...+..++..+.+-.+.-+
T Consensus       188 ~~----~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~  259 (267)
T 1dn1_B          188 SK----QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS  259 (267)
T ss_dssp             HH----HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11    1112355667789999999999999999999999999999999999999999999888888876655443

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=95.02  E-value=0.4  Score=33.90  Aligned_cols=63  Identities=17%  Similarity=0.214  Sum_probs=52.0

Q ss_pred             HHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244          170 EMRKMKQDQGLDMISEGLD---TLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT  232 (241)
Q Consensus       170 qq~~~eQD~~Ld~l~~~v~---~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~  232 (241)
                      +.....+++.++.+..++.   .-..+|..+-.+|..|.+-|+.+...+|.++.-|..+.+-|+.+
T Consensus        12 ~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m   77 (79)
T 1n7s_C           12 RRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDL   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhh
Confidence            4446667777777766655   55669999999999999999999999999999999998877765

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=93.10  E-value=0.31  Score=31.85  Aligned_cols=45  Identities=16%  Similarity=0.190  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHH
Q 026244          186 GLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK  230 (241)
Q Consensus       186 ~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~  230 (241)
                      .+....++|...-.+|..|.+-|+.++..+|.+++-|+.+.+-|+
T Consensus         8 l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~   52 (54)
T 1nhl_A            8 LAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence            345567788889999999999999999999999999999887664

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=92.14  E-value=1.4  Score=30.39  Aligned_cols=58  Identities=7%  Similarity=0.135  Sum_probs=44.8

Q ss_pred             hhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244          175 KQDQGLDMISEGLDTLKN---MAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT  232 (241)
Q Consensus       175 eQD~~Ld~l~~~v~~lk~---~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~  232 (241)
                      -+++.|+.-...+.-..+   .|..=-.+|..|.+.|+.++..+|..+..++.+.++++.+
T Consensus         6 ~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~L   66 (70)
T 3b5n_C            6 TKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAEL   66 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345556655555544433   5555567899999999999999999999999999999876

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=91.49  E-value=2.6  Score=29.72  Aligned_cols=65  Identities=11%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHHHHHh
Q 026244          172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQV  236 (241)
Q Consensus       172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~l~k~  236 (241)
                      .+..-.+.|..-...+....++|..|-++|..|.+-|......++.+++-|..+.+-|+.+...|
T Consensus        13 ~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~   77 (81)
T 2nps_C           13 RLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRI   77 (81)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence            34566677888888889999999999999999999999999999999999999998888877765

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=91.07  E-value=0.5  Score=33.80  Aligned_cols=62  Identities=18%  Similarity=0.227  Sum_probs=50.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHH
Q 026244          170 EMRKMKQDQGLDMISEGLDTLKN---MAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH  231 (241)
Q Consensus       170 qq~~~eQD~~Ld~l~~~v~~lk~---~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~  231 (241)
                      +....-+++.|+.....+.-..+   .|..=-.+|..|.+.|+.++..+|..+..|+.+.+.|+.
T Consensus        16 ~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~   80 (83)
T 1l4a_C           16 QQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEG   80 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44566788888888777765544   666667899999999999999999999999988776653

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=88.19  E-value=2.7  Score=28.27  Aligned_cols=56  Identities=11%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244          177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT  232 (241)
Q Consensus       177 D~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~  232 (241)
                      .+.|..-...+....++|..+-.+|..|.+-|......++.++.-|..+.+-|+.+
T Consensus         8 ~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m   63 (65)
T 1gl2_C            8 TQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM   63 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhh
Confidence            44566666777888999999999999999999999999999999999988666543

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=82.70  E-value=1.4  Score=36.74  Aligned_cols=61  Identities=18%  Similarity=0.241  Sum_probs=48.2

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHhhhHHHHHHHHHHHH
Q 026244          172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT  232 (241)
Q Consensus       172 ~~~eQD~~Ld~l~~~v~~lk~~a~~ig~El~~Q~~lLd~l~~~vD~~~~~L~~~~~r~~~~  232 (241)
                      ...+-...|..|...|..+.++-..|..-+++|..+++.|+..|+.+...+..++..+.+-
T Consensus       206 ~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A  266 (279)
T 3c98_B          206 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA  266 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677899999999999999999999999999999999999999877666555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1lvfa_	106	Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu	98.96

>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=8.1e-09  Score=76.76  Aligned_cols=93  Identities=15%  Similarity=0.171  Sum_probs=76.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhhhh------chhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHH-----hcCCCHH
Q 026244           33 DDAFARLYGAVEADIEAALQKAESASNEK------NRASVVALNAEIRRTKARLLEEVPKLQRLAIKK-----VKGLSTE  101 (241)
Q Consensus        33 ~DpF~~~~~d~~~~l~~~~~~~~~~~~~~------n~~~~~~~~~eir~~l~~L~e~l~~L~~~l~~~-----~~~l~~~  101 (241)
                      +|||..+..+|...|..+....+.....+      +++....+..+++..|..+..+|.+|++.+...     .++|++.
T Consensus         1 eDPF~~v~~EVq~s~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l~~~   80 (106)
T d1lvfa_           1 EDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDAT   80 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTCCHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCCCHH
Confidence            59999999999988888765544443332      234556678999999999999999999986422     3689999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhc
Q 026244          102 ELVARNDLVLALPDRIQAIPDGTA  125 (241)
Q Consensus       102 E~~rR~~~v~~L~~~i~~l~~~~~  125 (241)
                      |+.+|+.||..++.+|.+|+..++
T Consensus        81 ei~~Rr~fi~~~~~~I~~~~~~l~  104 (106)
T d1lvfa_          81 ELSIRKAFITSTRQIVRDMKDQMS  104 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998775