Citrus Sinensis ID: 026288

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLSD
Secondary Structure (PSIPRED)
cccHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccEEEEEHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msspaeyyhslppickAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYgvnlekgpferrtADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSrefpnsqinIYGLVTLKAFYLPWAMLALDVifgsplvpdLLGIIAGHLYYFLTVLhplatgknllktpKWVQKLVARWRIgapainraqperttgvafrgrsyrlsd
Flexible Loop (DISEMBL)
MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIgapainraqperttgvafrgrsyrlsd
Low Complexity Region (SEG)
MSSPAEYYHSLPPICKAYGTLCVAVATVCSlglldlsilalEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLSD
Disordered region (IsUnstruct)
******YYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAIN*********************
Disordered Region (DISOPRED)
MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVAR******************************
Disordered Region (DISEMBL)
********HSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLSD
Disordered Region (DISPRO)
*SSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARW*****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q8VZU9	266	Derlin-1 OS=Arabidopsis t	yes	no	1.0	0.902	0.676	1e-97
Q06397	242	Derlin-1 OS=Oryza sativa	yes	no	1.0	0.991	0.702	2e-93
Q4G2J6	243	Derlin-1.1 OS=Zea mays GN	N/A	no	0.995	0.983	0.684	2e-89
Q4G2J5	243	Derlin-1.2 OS=Zea mays GN	N/A	no	0.995	0.983	0.692	2e-89
Q54NN1	254	Probable derlin-2 homolog	yes	no	0.866	0.818	0.411	1e-38
Q851X7	249	Derlin-2 OS=Oryza sativa	no	no	0.85	0.819	0.399	2e-36
Q4G2J4	249	Derlin-2.1 OS=Zea mays GN	N/A	no	0.85	0.819	0.399	2e-36
Q4G2J3	249	Derlin-2.2 OS=Zea mays GN	N/A	no	0.85	0.819	0.399	3e-36
Q5RC74	239	Derlin-2 OS=Pongo abelii	yes	no	0.945	0.949	0.376	3e-35
Q9GZP9	239	Derlin-2 OS=Homo sapiens	yes	no	0.945	0.949	0.376	3e-35

>sp|Q8VZU9|DERL1_ARATH Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1

 Score =  356 bits (913), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 180/266 (67%), Positives = 203/266 (76%), Gaps = 26/266 (9%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSP E+Y+SLPPI KAYGTLC        LGL+    +AL  +LV  +FQ+WRLITN F
Sbjct: 1   MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFG+ +LLVLS IP F + FL
Sbjct: 61  FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+SLVFML+Y+WSREFPN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGIIAGH
Sbjct: 121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQ------------------ 222
           LYYFLTVLHPLATGKN LKTPKWV K+VARWRIGAP  +  Q                  
Sbjct: 181 LYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGAGGGVGGG 240

Query: 223 --------PERTTGVAFRGRSYRLSD 240
                   P  ++  AFRGRSYRL+D
Sbjct: 241 GAYSSARAPPESSNTAFRGRSYRLTD 266

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q06397|DERL1_ORYSJ Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2

 Score =  342 bits (876), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 170/242 (70%), Positives = 193/242 (79%), Gaps = 2/242 (0%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAEYY+SLPPI KAYGTLC     +C L +L+   LAL Y  VF KFQ+WRL T+FF
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKG FE+RTADFLWMMIFGA+SLL LSAIP    YFL
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDIYFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+ +V ML+YVWSRE+PNSQI++YGLV L++FYLPWAML LDVIFGS ++P LLGI+ GH
Sbjct: 121 GVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQP--ERTTGVAFRGRSYRL 238
            YYFL+VLHPLATGKN LKTP WV K+VAR+RIG  A    +P    T   AFRGRSYRL
Sbjct: 181 TYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVRPAAANTGSGAFRGRSYRL 240

Query: 239 SD 240
           S 
Sbjct: 241 SQ 242

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4G2J6|DER11_MAIZE Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2

 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/244 (68%), Positives = 194/244 (79%), Gaps = 5/244 (2%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAEYY SLPPI KAYGTLC     +  L +L    L L+Y LVF KF++WRL+T+FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FL  FS+ FGIRLLMIARYGV LEKG F++RTADFLWMMIFGA+SLLVLS IP+F S+FL
Sbjct: 61  FLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSIIPLFNSFFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           GI +V ML+YVWSRE PN+QINIYGLV L++FYLPWAML LDVIFGS L+P LLGI+ GH
Sbjct: 121 GIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQP----ERTTGVAFRGRSY 236
           LYYF  VLHPLATGK+ LKTPKWV K+VAR+RIG  A +  +P       +GV FRGRSY
Sbjct: 181 LYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVRPPANGNSGSGV-FRGRSY 239

Query: 237 RLSD 240
           RL+ 
Sbjct: 240 RLNQ 243

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q4G2J5|DER12_MAIZE Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1

 Score =  328 bits (841), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 169/244 (69%), Positives = 190/244 (77%), Gaps = 5/244 (2%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAEYY SLPPI KAYGTLC     +  L +L+   L L Y  VF KF+VWR+ T+FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKG F++RTADFLWMMIFGA+SLLVLS IP   +Y L
Sbjct: 61  FLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSVIPQLNTYVL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+ +V MLVYVWSRE PN+QINIYG++ LKAFYLPW ML LDVIFGSPL+P LLGI+ GH
Sbjct: 121 GLPMVSMLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIG----APAINRAQPERTTGVAFRGRSY 236
           LYY+  VLHPLATGKN LKTPKWV K+VAR+RIG    AP    A     TG AFRGRSY
Sbjct: 181 LYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVRAPANGNAGTG-AFRGRSY 239

Query: 237 RLSD 240
           RL+ 
Sbjct: 240 RLNQ 243

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q54NN1|DERL2_DICDI Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 125/214 (58%), Gaps = 6/214 (2%)

Query: 1   MSSPAE-YYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNF 59
           M+ P E +Y +LP + K Y T CV  +    LGL+    L L + LVF K++ WRL TNF
Sbjct: 1   MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNF 60

Query: 60  FFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIF---- 115
           FF     +NF   +  + R+   LE+  F  R+AD+L+M IFG+  LL++ A   +    
Sbjct: 61  FFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAFLFYTKIV 120

Query: 116 -RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLL 174
            +  FL  S+ FM++YVWSR  PN  I+  GL T  A YLPW +L +  +F   L  DLL
Sbjct: 121 TKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLL 180

Query: 175 GIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLV 208
           G +AGH YYFL   +PL + + LLKTP +++ L+
Sbjct: 181 GAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNLM 214

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q851X7|DERL2_ORYSJ Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 9/213 (4%)

Query: 6   EYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTF 65
           E+Y  +P I ++Y T  V     C+L ++    L L  KLV   +++WRL+TNF +    
Sbjct: 7   EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKM 66

Query: 66  SINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----R 116
            ++F   +  +ARY   LE+  F  RTADF +M++FGA  L    L+   IP       R
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFAR 126

Query: 117 SYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGI 176
             FL  SL FM+VYVWS+  P   ++  GL T  A YLPW +L   ++ GS    DLLG+
Sbjct: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186

Query: 177 IAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 209
           IAGH+YYFL  ++P  TG+  LKTP +++ L A
Sbjct: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA 219

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4G2J4|DER21_MAIZE Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 9/213 (4%)

Query: 6   EYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTF 65
           E+Y  +P I ++Y T  V     C+L ++    L L  KLV   +++WRL+TNF +    
Sbjct: 7   EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKM 66

Query: 66  SINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----R 116
            ++F   +  +ARY   LE+  F  RTADF +M++FGA  L    L+   IP       R
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFAR 126

Query: 117 SYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGI 176
             FL  SL FM+VYVWS+  P   ++  GL T  A YLPW +L   ++ GS    DLLG+
Sbjct: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186

Query: 177 IAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 209
           IAGH+YYFL  ++P  TG+  LKTP +++ L A
Sbjct: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA 219

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q4G2J3|DER22_MAIZE Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 9/213 (4%)

Query: 6   EYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTF 65
           E+Y  +P I ++Y T  V     C+L ++    L L  KLV   +++WRL+TNF +    
Sbjct: 7   EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKM 66

Query: 66  SINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----R 116
            ++F   +  +ARY   LE+  F  RTADF +M++FGA  L    L+   IP       R
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFAR 126

Query: 117 SYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGI 176
             FL  SL FM+VYVWS+  P   ++  GL T  A YLPW +L   ++ GS    DLLG+
Sbjct: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186

Query: 177 IAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 209
           IAGH+YYFL  ++P  TG+  LKTP +++ L A
Sbjct: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA 219

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q5RC74|DERL2_PONAB Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1

 Score =  148 bits (374), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/234 (37%), Positives = 127/234 (54%), Gaps = 7/234 (2%)

Query: 8   YHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSI 67
           Y  +PP+ +AY T CV       L L+    L    +L+F  FQ+WRLITNF F G    
Sbjct: 10  YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query: 68  NFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRS-YFLGISLVF 126
           NF   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S  FLG +   
Sbjct: 70  NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGG---FLMTLFGLFVSLVFLGQAFTI 126

Query: 127 MLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLT 186
           MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ DLLGI  GH+Y+FL 
Sbjct: 127 MLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLE 186

Query: 187 VLHPLATGK-NLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLS 239
            + P   G   +LKTP  + K +       P  N    ER  G A+ G   RL 
Sbjct: 187 DVFPNQPGGIRILKTPS-ILKAIFDTPDEDPNYNPLPEERPGGFAW-GEGQRLG 238

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Pongo abelii (taxid: 9601)

>sp|Q9GZP9|DERL2_HUMAN Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1

 Score =  148 bits (374), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/234 (37%), Positives = 127/234 (54%), Gaps = 7/234 (2%)

Query: 8   YHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSI 67
           Y  +PP+ +AY T CV       L L+    L    +L+F  FQ+WRLITNF F G    
Sbjct: 10  YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query: 68  NFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRS-YFLGISLVF 126
           NF   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S  FLG +   
Sbjct: 70  NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGG---FLMTLFGLFVSLVFLGQAFTI 126

Query: 127 MLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLT 186
           MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ DLLGI  GH+Y+FL 
Sbjct: 127 MLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLE 186

Query: 187 VLHPLATGK-NLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLS 239
            + P   G   +LKTP  + K +       P  N    ER  G A+ G   RL 
Sbjct: 187 DVFPNQPGGIRILKTPS-ILKAIFDTPDEDPNYNPLPEERPGGFAW-GEGQRLG 238

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate. In contrast to DERL1, it is not involved in the degradation of MHC class I heavy chains following infection by cytomegaloviruses. May play a role in cell proliferation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
224091361	249	predicted protein [Populus trichocarpa]	1.0	0.963	0.815	1e-107
449435794	242	PREDICTED: derlin-1-like [Cucumis sativu	0.995	0.987	0.780	1e-103
225429398	240	PREDICTED: derlin-1 [Vitis vinifera] gi|	0.995	0.995	0.765	1e-101
356523830	246	PREDICTED: derlin-1-like [Glycine max]	0.995	0.971	0.759	1e-100
357520809	245	Derlin-1 [Medicago truncatula] gi|355524	0.991	0.971	0.759	8e-99
356513179	246	PREDICTED: derlin-1-like [Glycine max]	0.995	0.971	0.751	2e-98
388512087	246	unknown [Lotus japonicus]	0.995	0.971	0.740	7e-97
388519987	246	unknown [Lotus japonicus]	0.995	0.971	0.736	8e-97
297803112	266	hypothetical protein ARALYDRAFT_491823 [	1.0	0.902	0.680	2e-96
22329014	266	derlin-1 [Arabidopsis thaliana] gi|75161	1.0	0.902	0.676	5e-96

>gi|224091361|ref|XP_002309232.1| predicted protein [Populus trichocarpa] gi|222855208|gb|EEE92755.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/249 (81%), Positives = 213/249 (85%), Gaps = 9/249 (3%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAEYY SLPPI KAYGTLC+ + T    GLL L  +AL YK VFS FQVWRLIT FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCLFLTTAVQFGLLYLPDIALMYKPVFSSFQVWRLITTFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFGALSLLVLSAIPIF S FL
Sbjct: 61  FLGNFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFWSPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           GISLVFML+YVWSREFPN+QINIYGLVTLKAFYLPWAMLALDVIFG+PLVPDLLGIIAGH
Sbjct: 121 GISLVFMLLYVWSREFPNAQINIYGLVTLKAFYLPWAMLALDVIFGAPLVPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGA--PAINRAQPER-------TTGVAF 231
           LYYFLTVLHPLATG  LL+TP+WV KLVARWRIGA  P  N AQP+R       TT  AF
Sbjct: 181 LYYFLTVLHPLATGNILLRTPRWVNKLVARWRIGAPTPTYNSAQPDRTTQAADGTTSAAF 240

Query: 232 RGRSYRLSD 240
           RGRSYRL+D
Sbjct: 241 RGRSYRLND 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435794|ref|XP_004135679.1| PREDICTED: derlin-1-like [Cucumis sativus] gi|449489818|ref|XP_004158425.1| PREDICTED: derlin-1-like [Cucumis sativus]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/241 (78%), Positives = 209/241 (86%), Gaps = 2/241 (0%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAE+Y+SLPPI KAYGTLC    T   LGL D  ++AL+Y LVF  FQVWRL TNFF
Sbjct: 1   MSSPAEFYNSLPPISKAYGTLCFLATTAFQLGLYDPMLIALDYGLVFKHFQVWRLFTNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LE GPF+RRTADFLWMMIFG+L+LLVL+AIPIF+   L
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGSLTLLVLAAIPIFQFPVL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           GISLVFML+YVWSREFPN+QINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGI+AGH
Sbjct: 121 GISLVFMLLYVWSREFPNAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGILAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQ--PERTTGVAFRGRSYRL 238
           LYYFLTVLHPLA GKN+L+TP W+Q+LV+RWRIGAP + RA    +R T  AFRGRSYRL
Sbjct: 181 LYYFLTVLHPLAGGKNILRTPFWIQRLVSRWRIGAPPMQRAAVPDDRGTSGAFRGRSYRL 240

Query: 239 S 239
           +
Sbjct: 241 N 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429398|ref|XP_002275238.1| PREDICTED: derlin-1 [Vitis vinifera] gi|296081591|emb|CBI20596.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/239 (76%), Positives = 205/239 (85%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MS+PAE+Y+SLPPI KAYGT+C+   T   LGL      AL Y+LVF  FQVWRL+TNFF
Sbjct: 1   MSTPAEFYNSLPPISKAYGTMCLVATTAFHLGLFPPMYTALIYELVFKHFQVWRLVTNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKG FERRTADFLWMMIFGAL+LLVLSAIP+  + FL
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLEKGVFERRTADFLWMMIFGALTLLVLSAIPLLWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+SLVFML+YVWSREFPN+QIN+YGLV LKAFY PWAMLALDVIFGS ++PDLLGI+AGH
Sbjct: 121 GVSLVFMLLYVWSREFPNAQINLYGLVQLKAFYFPWAMLALDVIFGSQILPDLLGIVAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLS 239
           LYYFLTVLHPL+TGKN+LKTP+WV KLVAR+RIG P    AQPER  GVAFRGR YRL+
Sbjct: 181 LYYFLTVLHPLSTGKNILKTPRWVHKLVARFRIGYPTTAPAQPERAAGVAFRGRGYRLN 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523830|ref|XP_003530537.1| PREDICTED: derlin-1-like [Glycine max]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/245 (75%), Positives = 200/245 (81%), Gaps = 6/245 (2%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAE+YHSLPPI KAYGT+C+       LGL   + +AL Y  VF  FQVWRL TN F
Sbjct: 1   MSSPAEFYHSLPPITKAYGTVCLLATATYHLGLYHPAYIALFYDKVFYGFQVWRLFTNLF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMI RYGV LEKGPF+RRTADFLWMMIFGA +LLVLSAIPIF S FL
Sbjct: 61  FLGPFSINFGIRLLMIVRYGVQLEKGPFDRRTADFLWMMIFGAFALLVLSAIPIFWSPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
            + LVFML+YVWSREFPN+QINIYGLV LKAFYLPWAMLALDVIFGSPL+PDLLGIIAGH
Sbjct: 121 AVPLVFMLLYVWSREFPNAQINIYGLVALKAFYLPWAMLALDVIFGSPLIPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIG------APAINRAQPERTTGVAFRGR 234
           LYYF TVLHPLA GKN+LKTP WV KL+ARWRIG       PA N  Q ER +GVAFRGR
Sbjct: 181 LYYFFTVLHPLAGGKNILKTPMWVHKLIARWRIGVQPISRGPAANNPQQERGSGVAFRGR 240

Query: 235 SYRLS 239
           SYRL 
Sbjct: 241 SYRLG 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520809|ref|XP_003630693.1| Derlin-1 [Medicago truncatula] gi|355524715|gb|AET05169.1| Derlin-1 [Medicago truncatula] gi|388496922|gb|AFK36527.1| unknown [Medicago truncatula]

 Score =  365 bits (937), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 186/245 (75%), Positives = 203/245 (82%), Gaps = 7/245 (2%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSP E+Y SLPPI KAYGT C+    V  LGL +   +AL Y+ VF +FQVWRL TNFF
Sbjct: 1   MSSPGEFYKSLPPISKAYGTACLVATAVYQLGLYNPVHIALLYERVFFRFQVWRLFTNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMI RYGV LEKGPF+RRTADFLWMMIFGA +LLVLSAIP F + FL
Sbjct: 61  FLGPFSINFGIRLLMIVRYGVQLEKGPFDRRTADFLWMMIFGAFALLVLSAIPFFWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
            ISLVFML+YVWSREFPN+QIN+YGLV LKAFYLPWAMLALDVIFGS L+PDLLGIIAGH
Sbjct: 121 AISLVFMLLYVWSREFPNAQINLYGLVALKAFYLPWAMLALDVIFGSALMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQP------ERTTGVAFRGR 234
           LYYFLTVLHPLA GKN+LKTP WV KLVARWRIGAP I R QP      E ++GV FRGR
Sbjct: 181 LYYFLTVLHPLAGGKNILKTPMWVHKLVARWRIGAPPITRGQPVNNVQQESSSGV-FRGR 239

Query: 235 SYRLS 239
           SYRL+
Sbjct: 240 SYRLN 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513179|ref|XP_003525291.1| PREDICTED: derlin-1-like [Glycine max]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 184/245 (75%), Positives = 199/245 (81%), Gaps = 6/245 (2%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAE+YHSLPPI KAYGT+C+       LGL   + +AL Y  VF  FQ WRL TN F
Sbjct: 1   MSSPAEFYHSLPPITKAYGTVCLLATATYHLGLDHPAYIALLYDKVFYGFQAWRLFTNLF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMI RYGV LEKGPF+RRTADFLWMMIFGA +LLVLSAIPIF S FL
Sbjct: 61  FLGPFSINFGIRLLMIVRYGVQLEKGPFDRRTADFLWMMIFGAFALLVLSAIPIFWSPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
            + LVFML+YVWSREFPN+QINIYGLV LKAFYLPWAMLALD+IFGSPL+PDLLGIIAGH
Sbjct: 121 AVPLVFMLLYVWSREFPNAQINIYGLVALKAFYLPWAMLALDIIFGSPLIPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQP------ERTTGVAFRGR 234
           LYYFLTVLHPLA GKN+LKTP WV KLVARW IG   I+R Q       ER +GVAFRGR
Sbjct: 181 LYYFLTVLHPLAGGKNILKTPMWVHKLVARWIIGVQPISRGQAANDPQQERGSGVAFRGR 240

Query: 235 SYRLS 239
           SYRL 
Sbjct: 241 SYRLG 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512087|gb|AFK44105.1| unknown [Lotus japonicus]

 Score =  359 bits (921), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 183/247 (74%), Positives = 205/247 (82%), Gaps = 8/247 (3%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAE+Y++LPPI KAYGT C+A      LGL     +AL Y  VF  FQVWRL TNFF
Sbjct: 1   MSSPAEWYNTLPPISKAYGTTCLAATAAYQLGLYQPVHIALLYPQVFYGFQVWRLFTNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKGPF+RRTADFLWMMIFG  +LLVLSAIP   + FL
Sbjct: 61  FLGPFSINFGIRLLMIARYGVQLEKGPFDRRTADFLWMMIFGGFALLVLSAIPFLWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
            IS+VFML+Y+WSREFP +QINIYGLV+LKAFYLPWAMLALDVIFGSP++PDLLGIIAGH
Sbjct: 121 AISVVFMLLYIWSREFPIAQINIYGLVSLKAFYLPWAMLALDVIFGSPIIPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPA-INRAQP------ERTTGVAFRG 233
           LYYFLTVLHPLA GKN+LKTP WV K VARWRIGAPA ++RAQP      E ++GV FRG
Sbjct: 181 LYYFLTVLHPLAGGKNILKTPMWVHKSVARWRIGAPAVVSRAQPVNNARQESSSGV-FRG 239

Query: 234 RSYRLSD 240
           RSYRL++
Sbjct: 240 RSYRLNE 246

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519987|gb|AFK48055.1| unknown [Lotus japonicus]

 Score =  358 bits (920), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 182/247 (73%), Positives = 204/247 (82%), Gaps = 8/247 (3%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAE+Y++LPPI KAYGT C+A      LGL     +AL Y  VF  FQVWRL TNFF
Sbjct: 1   MSSPAEWYNTLPPISKAYGTACLAATAAYQLGLYQPVHIALSYPQVFYGFQVWRLFTNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LE+GPF+RRTADFLWMMIFG  +LLVLSAIP   + FL
Sbjct: 61  FLGPFSINFGIRLLMIARYGVQLERGPFDRRTADFLWMMIFGGFALLVLSAIPFLWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
            IS+VFML+Y+WSREFP +QINIYGLV+LKAFYLPWAMLALDVIFGSP++PDLLGIIAGH
Sbjct: 121 AISVVFMLLYIWSREFPIAQINIYGLVSLKAFYLPWAMLALDVIFGSPIIPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPA-INRAQP------ERTTGVAFRG 233
           LYYF TVLHPLA GKN+LKTP WV KLVARWRIGAPA + RAQP      E ++GV FRG
Sbjct: 181 LYYFSTVLHPLAGGKNILKTPMWVHKLVARWRIGAPAVVGRAQPVNNARQESSSGV-FRG 239

Query: 234 RSYRLSD 240
           RSYRL++
Sbjct: 240 RSYRLNE 246

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803112|ref|XP_002869440.1| hypothetical protein ARALYDRAFT_491823 [Arabidopsis lyrata subsp. lyrata] gi|297315276|gb|EFH45699.1| hypothetical protein ARALYDRAFT_491823 [Arabidopsis lyrata subsp. lyrata]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 181/266 (68%), Positives = 205/266 (77%), Gaps = 26/266 (9%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSP EYY+SLPPI KAYGTLC+       LGL+    +AL  +LV  +FQ+WRLI+NFF
Sbjct: 1   MSSPGEYYNSLPPITKAYGTLCLFTTIANQLGLVAPVHIALFPQLVLKQFQIWRLISNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFG+ +LLVLS IP F + FL
Sbjct: 61  FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+SLVFML+Y+WSREFPN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGIIAGH
Sbjct: 121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQ------------------ 222
           LYYFLTVLHPLATGKN LKTPKWV K+VARWRIGAP  +  Q                  
Sbjct: 181 LYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGAGGGVGGG 240

Query: 223 --------PERTTGVAFRGRSYRLSD 240
                   P  ++  AFRGRSYRL+D
Sbjct: 241 GAYSSARAPPESSNTAFRGRSYRLTD 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329014|ref|NP_194662.2| derlin-1 [Arabidopsis thaliana] gi|75161705|sp|Q8VZU9.1|DERL1_ARATH RecName: Full=Derlin-1; AltName: Full=AtDerlin1-1 gi|17380686|gb|AAL36173.1| unknown protein [Arabidopsis thaliana] gi|20465889|gb|AAM20097.1| unknown protein [Arabidopsis thaliana] gi|332660218|gb|AEE85618.1| derlin-1 [Arabidopsis thaliana]

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 180/266 (67%), Positives = 203/266 (76%), Gaps = 26/266 (9%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSP E+Y+SLPPI KAYGTLC        LGL+    +AL  +LV  +FQ+WRLITN F
Sbjct: 1   MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFG+ +LLVLS IP F + FL
Sbjct: 61  FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+SLVFML+Y+WSREFPN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGIIAGH
Sbjct: 121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQ------------------ 222
           LYYFLTVLHPLATGKN LKTPKWV K+VARWRIGAP  +  Q                  
Sbjct: 181 LYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGAGGGVGGG 240

Query: 223 --------PERTTGVAFRGRSYRLSD 240
                   P  ++  AFRGRSYRL+D
Sbjct: 241 GAYSSARAPPESSNTAFRGRSYRLTD 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2118294	266	DER1 "AT4G29330" [Arabidopsis	0.916	0.827	0.75	3.4e-92
DICTYBASE|DDB_G0285131	254	derl2 "derlin-2" [Dictyosteliu	0.866	0.818	0.387	1.1e-37
UNIPROTKB|F1RL23	231	DERL3 "Uncharacterized protein	0.837	0.870	0.395	1.5e-37
UNIPROTKB|Q96Q80	235	DERL3 "Derlin-3" [Homo sapiens	0.837	0.855	0.395	2.4e-37
UNIPROTKB|Q0P5E4	231	DERL3 "Derlin-3" [Bos taurus (	0.841	0.874	0.395	6.3e-37
UNIPROTKB|F1MS86	231	DERL3 "Derlin-3" [Bos taurus (	0.841	0.874	0.390	1.3e-36
WB|WBGene00020109	237	R151.6 [Caenorhabditis elegans	0.8	0.810	0.389	1.3e-36
UNIPROTKB|Q21997	237	der-2 "Derlin-2" [Caenorhabdit	0.8	0.810	0.389	1.3e-36
UNIPROTKB|F6PVF9	239	DERL2 "Uncharacterized protein	0.945	0.949	0.366	4.4e-36
UNIPROTKB|Q9GZP9	239	DERL2 "Derlin-2" [Homo sapiens	0.945	0.949	0.366	4.4e-36

TAIR|locus:2118294 DER1 "AT4G29330" [Arabidopsis thaliana (taxid:3702)]

 Score = 868 (310.6 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
 Identities = 168/224 (75%), Positives = 185/224 (82%)

Query:     1 MSSPAEYYHSLPPICKAYGTLC--VAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITN 58
             MSSP E+Y+SLPPI KAYGTLC    VAT              E  LV  +FQ+WRLITN
Sbjct:     1 MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPE--LVLKQFQIWRLITN 58

Query:    59 FFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSY 118
              FFLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFG+ +LLVLS IP F + 
Sbjct:    59 LFFLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTP 118

Query:   119 FLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIA 178
             FLG+SLVFML+Y+WSREFPN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGIIA
Sbjct:   119 FLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIA 178

Query:   179 GHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQ 222
             GHLYYFLTVLHPLATGKN LKTPKWV K+VARWRIGAP  +  Q
Sbjct:   179 GHLYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQ 222

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

DICTYBASE|DDB_G0285131 derl2 "derlin-2" [Dictyostelium discoideum (taxid:44689)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 83/214 (38%), Positives = 119/214 (55%)

Query:     1 MSSPAE-YYHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNF 59
             M+ P E +Y +LP + K Y T CV  +                + LVF K++ WRL TNF
Sbjct:     1 MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNF 60

Query:    60 FFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIF---- 115
             FF     +NF   +  + R+   LE+  F  R+AD+L+M IFG+  LL++ A   +    
Sbjct:    61 FFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAFLFYTKIV 120

Query:   116 -RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLL 174
              +  FL  S+ FM++YVWSR  PN  I+  GL T  A YLPW +L +  +F   L  DLL
Sbjct:   121 TKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLL 180

Query:   175 GIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLV 208
             G +AGH YYFL   +PL + + LLKTP +++ L+
Sbjct:   181 GAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNLM 214

GO:0003674 "molecular_function" evidence=ND

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|F1RL23 DERL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 81/205 (39%), Positives = 119/205 (58%)

Query:     5 AEYYHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGT 64
             AE+   +P + + Y T CV                     LVF KFQVWRL+TNF F G 
Sbjct:     8 AEFLQ-VPAVTRTYTTACVLTTAAVQLEFLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGP 66

Query:    65 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISL 124
                +F   +L + RY   LE+G F  RTADF++M +FG + +++L  +     +FLG +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMILLGLLGSL--FFLGQAL 124

Query:   125 VFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYF 184
               MLVYVWSR  P  ++N +GL+T +A +LPWA++   ++ G+ ++ DLLGI  GH+YYF
Sbjct:   125 TAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYF 184

Query:   185 LTVLHPLATG-KNLLKTPKWVQKLV 208
             L  + P   G K LL TP +++ L+
Sbjct:   185 LEDVFPNQPGGKRLLLTPSFLKLLL 209

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

UNIPROTKB|Q96Q80 DERL3 "Derlin-3" [Homo sapiens (taxid:9606)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 81/205 (39%), Positives = 120/205 (58%)

Query:     5 AEYYHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGT 64
             AE+   +P + +AY   CV                     LVF KFQVWRL+TNF F G 
Sbjct:     8 AEFLQ-VPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGP 66

Query:    65 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISL 124
                +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQAL 124

Query:   125 VFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYF 184
             + MLVYVWSR  P  ++N +GL+T +A +LPWA++   ++ G+ ++ DLLGI  GH+YYF
Sbjct:   125 MAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYF 184

Query:   185 LTVLHPLATG-KNLLKTPKWVQKLV 208
             L  + P   G K LL+TP +++ L+
Sbjct:   185 LEDVFPNQPGGKRLLQTPGFLKLLL 209

GO:0005515 "protein binding" evidence=IPI

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP;NAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IDA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IMP

UNIPROTKB|Q0P5E4 DERL3 "Derlin-3" [Bos taurus (taxid:9913)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 81/205 (39%), Positives = 117/205 (57%)

Query:     5 AEYYHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGT 64
             A  +  +P + + Y   CV                     LVF KFQVWRLITNF F G 
Sbjct:     7 ATEFLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGP 66

Query:    65 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISL 124
                +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQAL 124

Query:   125 VFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYF 184
               MLVYVWSR  P  ++N +GL+T +A +LPWA++ L ++ G+ ++ DLLGI  GH+YYF
Sbjct:   125 TAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYF 184

Query:   185 LTVLHPLATG-KNLLKTPKWVQKLV 208
             L  + P   G K LL TP +++ L+
Sbjct:   185 LEDVFPNQPGGKRLLLTPSFLKLLL 209

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MS86 DERL3 "Derlin-3" [Bos taurus (taxid:9913)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 80/205 (39%), Positives = 116/205 (56%)

Query:     5 AEYYHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGT 64
             A  +  +P + + Y   CV                     LVF KFQVWRLITNF F G 
Sbjct:     7 ATEFLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGP 66

Query:    65 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISL 124
                +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQAL 124

Query:   125 VFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYF 184
               MLVYVWSR  P  ++N +GL+T +A +LPWA++   ++ G+ ++ DLLGI  GH+YYF
Sbjct:   125 TAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGFSMLLGNSILVDLLGIAVGHVYYF 184

Query:   185 LTVLHPLATG-KNLLKTPKWVQKLV 208
             L  + P   G K LL TP +++ L+
Sbjct:   185 LEDVFPNQPGGKRLLLTPSFLKLLL 209

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

WB|WBGene00020109 R151.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 76/195 (38%), Positives = 115/195 (58%)

Query:    11 LPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFG 70
             +PP+ + Y   CV + T               ++L+  K+Q WRLIT+F F G+F  +F 
Sbjct:    11 MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL 70

Query:    71 IRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVY 130
               ++   RY + LE+G F  R ADF++M +FGA+ L++LS I + +  FLG +   MLVY
Sbjct:    71 FNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAV-LMILSGIFV-QILFLGQAFTIMLVY 128

Query:   131 VWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP 190
             +WSR  P  Q+N +G++T  A YLPW +L   ++ G+  V D +GI  GH+Y+FL  + P
Sbjct:   129 IWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFP 188

Query:   191 LAT-GKNLLKTPKWV 204
                 GK  LKTP+W+
Sbjct:   189 FQEHGKRFLKTPQWL 203

GO:0016021 "integral to membrane" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP

UNIPROTKB|Q21997 der-2 "Derlin-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 76/195 (38%), Positives = 115/195 (58%)

Query:    11 LPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFG 70
             +PP+ + Y   CV + T               ++L+  K+Q WRLIT+F F G+F  +F 
Sbjct:    11 MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL 70

Query:    71 IRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVY 130
               ++   RY + LE+G F  R ADF++M +FGA+ L++LS I + +  FLG +   MLVY
Sbjct:    71 FNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAV-LMILSGIFV-QILFLGQAFTIMLVY 128

Query:   131 VWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP 190
             +WSR  P  Q+N +G++T  A YLPW +L   ++ G+  V D +GI  GH+Y+FL  + P
Sbjct:   129 IWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFP 188

Query:   191 LAT-GKNLLKTPKWV 204
                 GK  LKTP+W+
Sbjct:   189 FQEHGKRFLKTPQWL 203

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030307 "positive regulation of cell growth" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

UNIPROTKB|F6PVF9 DERL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 85/232 (36%), Positives = 122/232 (52%)

Query:     8 YHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSI 67
             Y  +PP+ +AY T CV                    +L+F  FQ+WRLITNF F G    
Sbjct:    10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query:    68 NFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFM 127
             NF   ++ + RY   LE+G F  RTADF++M +FG   L+ L  + +    FLG +   M
Sbjct:    70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGF-LMTLFGLFV-SLVFLGQAFTIM 127

Query:   128 LVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTV 187
             LVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ DLLGI  GH+Y+FL  
Sbjct:   128 LVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLED 187

Query:   188 LHPLATGK-NLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRL 238
             + P   G   +LKTP  + K +       P  N    ER  G A+ G   RL
Sbjct:   188 VFPNQPGGIRILKTPS-ILKAIFDTPDEDPNYNPLPEERPGGFAW-GEGQRL 237

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

UNIPROTKB|Q9GZP9 DERL2 "Derlin-2" [Homo sapiens (taxid:9606)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 85/232 (36%), Positives = 122/232 (52%)

Query:     8 YHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSI 67
             Y  +PP+ +AY T CV                    +L+F  FQ+WRLITNF F G    
Sbjct:    10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query:    68 NFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFM 127
             NF   ++ + RY   LE+G F  RTADF++M +FG   L+ L  + +    FLG +   M
Sbjct:    70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGF-LMTLFGLFV-SLVFLGQAFTIM 127

Query:   128 LVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTV 187
             LVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ DLLGI  GH+Y+FL  
Sbjct:   128 LVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLED 187

Query:   188 LHPLATGK-NLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRL 238
             + P   G   +LKTP  + K +       P  N    ER  G A+ G   RL
Sbjct:   188 VFPNQPGGIRILKTPS-ILKAIFDTPDEDPNYNPLPEERPGGFAW-GEGQRL 237

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IDA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IMP

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BNI4	DERL2_MOUSE	No assigned EC number	0.3717	0.9458	0.9497	yes	no
Q9GZP9	DERL2_HUMAN	No assigned EC number	0.3760	0.9458	0.9497	yes	no
Q21997	DERL2_CAEEL	No assigned EC number	0.3668	0.9041	0.9156	yes	no
Q5RC74	DERL2_PONAB	No assigned EC number	0.3760	0.9458	0.9497	yes	no
Q8VZU9	DERL1_ARATH	No assigned EC number	0.6766	1.0	0.9022	yes	no
Q06397	DERL1_ORYSJ	No assigned EC number	0.7024	1.0	0.9917	yes	no
Q54NN1	DERL2_DICDI	No assigned EC number	0.4112	0.8666	0.8188	yes	no
Q4G2J5	DER12_MAIZE	No assigned EC number	0.6926	0.9958	0.9835	N/A	no
Q4G2J6	DER11_MAIZE	No assigned EC number	0.6844	0.9958	0.9835	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VI0994	hypothetical protein (249 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00400185	hypothetical protein (228 aa)						•			0.800
	eugene3.00021229	hypothetical protein (227 aa)						•			0.800
	estExt_Genewise1_v1.C_LG_VII3310	hypothetical protein (230 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
pfam04511	192	pfam04511, DER1, Der1-like family	5e-46
COG5291	313	COG5291, COG5291, Predicted membrane protein [Func	1e-26

>gnl|CDD|218120 pfam04511, DER1, Der1-like family

 Score =  151 bits (384), Expect = 5e-46
 Identities = 79/193 (40%), Positives = 115/193 (59%), Gaps = 4/193 (2%)

Query: 11  LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFG 70
           +PP+ + +    V +  +  L L+    L   ++LVF KFQ+WRL+T+ F+ G    +F 
Sbjct: 1   IPPVTRYWTLATVLLTILGRLNLISPLKLVFNWELVFKKFQIWRLLTSLFYFGNTGFHFL 60

Query: 71  IRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVY 130
             L  + RY   LE G F  R AD+L+M+IFGA+ + +     I  +YFLG  L  M+VY
Sbjct: 61  FNLYFLYRYSSMLENGSFRGRAADYLYMLIFGAVLITIFGL--IVNAYFLGQGLTAMIVY 118

Query: 131 VWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFG-SPLVPDLLGIIAGHLYYFLTVLH 189
           VWSR+  + Q+N +GL+  KA YLPW +L    + G    + DL+GI+ GHLYYF   ++
Sbjct: 119 VWSRKNADVQVNFFGLIRFKASYLPWVLLGFSFLLGNRSSLVDLMGILVGHLYYFFKDVY 178

Query: 190 P-LATGKNLLKTP 201
           P L  GK+LLKTP
Sbjct: 179 PRLPGGKDLLKTP 191

The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process. The mutant classes were called 'der' for 'degradation in the ER'. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein, that is localised to the ER. Deletion of DER1 abolished degradation of the substrate proteins. The function of the Der1 protein seems to be specifically required for the degradation process associated with the ER. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. Suggesting that this family may also mediate degradation of misfolded proteins (Bateman A pers. obs.). Length = 192

>gnl|CDD|227611 COG5291, COG5291, Predicted membrane protein [Function unknown]

 Score =  104 bits (260), Expect = 1e-26
 Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 3/198 (1%)

Query: 11  LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFG 70
           +PPI +    L  AV  +  + L+          L   + Q+WRL T+F + G  +++  
Sbjct: 19  IPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMF 78

Query: 71  IRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVY 130
           + +  + RY   LE+G F     ++ W ++  +L +  +S I       LG S    + Y
Sbjct: 79  MHVYFLYRYSRMLEEGCFNTSLVEYFWYLLVISLVIFAISNI-YGGISALGTSFSATITY 137

Query: 131 VWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPL-VPDLLGIIAGHLYYFLTVLH 189
           +WS+  P + I  +G +++   YLP+ +L    +    + + D+LG + GHL+++   ++
Sbjct: 138 IWSKRNPRAIIQFFGFISVPGKYLPFILLGFSFLSRRGISIDDVLGFVVGHLFHYFGDIY 197

Query: 190 PLATGKNLLKTPKWVQKL 207
           P+  G+++L TP WV+KL
Sbjct: 198 PM-IGRDILSTPCWVKKL 214

Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG0858	239	consensus Predicted membrane protein [Function unk	100.0
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	100.0
COG5291	313	Predicted membrane protein [Function unknown]	100.0
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.7
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.24
COG0705	228	Membrane associated serine protease [Amino acid tr	99.09
PTZ00101	278	rhomboid-1 protease; Provisional	99.05
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	98.94
KOG4463	323	consensus Uncharacterized conserved protein [Funct	98.61
KOG2890	326	consensus Predicted membrane protein [Function unk	97.94
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	97.57
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	96.88
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	88.3

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=7.1e-63  Score=415.06  Aligned_cols=208  Identities=44%  Similarity=0.871  Sum_probs=199.7

Q ss_pred             CCChHHHHhccChHHHHHHHHHHHHHHHHhcCcccccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHh
Q 026288            1 MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYG   80 (240)
Q Consensus         1 m~~~~~~~~~iPpvTR~~~~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~   80 (240)
                      ++++.+|+.+||||||+++++|+++++++++++++|.+++++|++++||+|+||++|+++++|++++++++|++++|+||
T Consensus         2 ~~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~   81 (239)
T KOG0858|consen    2 NMDLLNFYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYS   81 (239)
T ss_pred             chhHHHHHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             HHhccCCCCCCchhHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhcCCCceeEEEEeecccccchHHHHHH
Q 026288           81 VNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLA  160 (240)
Q Consensus        81 ~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~  160 (240)
                      ++||++.|+++++||+|+++++++++.+.+.  +.+..+|+++++.+++|+|||+||+.+|+++|++++||+|+||++++
T Consensus        82 ~~LE~g~f~~rtadf~~mllf~~~l~~~~~~--~~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvll~  159 (239)
T KOG0858|consen   82 SMLEEGSFRGRTADFLYMLLFGAVLLTLTGL--FVYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVLLG  159 (239)
T ss_pred             HHHhcCCCCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHHHH
Confidence            9999999999999999999999999887775  36788999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHHhhccCC-CCCCCcCChHHHHHhhhh
Q 026288          161 LDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLA-TGKNLLKTPKWVQKLVAR  210 (240)
Q Consensus       161 ~~~l~~~~~~~~l~Gi~~Ghly~~l~~i~P~~-~g~~~l~tP~~~~~l~~~  210 (240)
                      ++++.+++.+.|++||++||+|+|++|++|.. +|++++|||+|+++++++
T Consensus       160 fs~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~  210 (239)
T KOG0858|consen  160 FSFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFAD  210 (239)
T ss_pred             HHHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCC
Confidence            99999998899999999999999999999995 569999999999999987

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=100.00  E-value=3.7e-53  Score=356.14  Aligned_cols=192  Identities=47%  Similarity=0.946  Sum_probs=181.8

Q ss_pred             cChHHHHHHHHHHHHHHHHhcCcccccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCCCCC
Q 026288           11 LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFER   90 (240)
Q Consensus        11 iPpvTR~~~~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~f~~   90 (240)
                      ||||||+++++++++++++.+++++|.++++||+++++|+|+||++|++|++|+.+++++++++++|++|++||+++|++
T Consensus         1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~   80 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQG   80 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhh---hcccchHHHHHHHHHHHHhhcCCCceeEEEEeecccccchHHHHHHHHHHhCC
Q 026288           91 RTADFLWMMIFGALSLLVLSAIPI---FRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS  167 (240)
Q Consensus        91 ~~~dyl~~ll~~~~~i~~~s~~~~---~~~~~l~~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~~~~l~~~  167 (240)
                      +++||+|+++++++++.+++.+..   .+.+++++++..+++|+|||+||+++|+++|++++|++|+||+++++++++++
T Consensus        81 ~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~~~l~~~  160 (197)
T PF04511_consen   81 RSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAFSLLFGG  160 (197)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHHHHHhCC
Confidence            999999999999999888886421   24578999999999999999999999999999999999999999999999998


Q ss_pred             -CchhHHHHHHHHHHHHHHHhhccCC-CCCCCcCChH
Q 026288          168 -PLVPDLLGIIAGHLYYFLTVLHPLA-TGKNLLKTPK  202 (240)
Q Consensus       168 -~~~~~l~Gi~~Ghly~~l~~i~P~~-~g~~~l~tP~  202 (240)
                       +...|++|+++||+|+|++|++|+. +|+|++|||+
T Consensus       161 ~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~  197 (197)
T PF04511_consen  161 SSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ  197 (197)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence             7899999999999999999999996 5899999995

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>COG5291 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.6e-45  Score=309.23  Aligned_cols=201  Identities=26%  Similarity=0.582  Sum_probs=180.4

Q ss_pred             HHHhc---cChHHHHHHHHHHHHHHHHhcCcccccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHH
Q 026288            6 EYYHS---LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVN   82 (240)
Q Consensus         6 ~~~~~---iPpvTR~~~~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~   82 (240)
                      +.+.+   ||||||+++++..+++++..+++++|+++++.|.+.+|+.|+||++||+.++++..++.+|++|++|+||++
T Consensus        11 ~llg~~~~IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~   90 (313)
T COG5291          11 FLLGQMLRIPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRM   90 (313)
T ss_pred             hhhcccccCCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence            44444   999999999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             hccCCCCCCchhHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhcCCCceeEEEEeecccccchHHHHHHHH
Q 026288           83 LEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALD  162 (240)
Q Consensus        83 LE~~~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~~~  162 (240)
                      ||+.+|+.+-.||+||++++..++..++.+ ..+...|++++..++.|.|+++||++++++||+|++++||+|+++++++
T Consensus        91 LE~g~f~~~lv~Y~~yl~~~~l~i~a~s~I-~gg~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP~Illgfs  169 (313)
T COG5291          91 LEEGCFNTSLVEYFWYLLVISLVIFAISNI-YGGISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFS  169 (313)
T ss_pred             HhccccCccHHHHHHHHHHHHHHHHHHHHH-hcchhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhhHHHHHHH
Confidence            999999877789999999999999888865 3346678999999999999999999999999999999999999999999


Q ss_pred             HHhC-CCchhHHHHHHHHHHHHHHHhhccCCCCCCCcCChHHHHHhh
Q 026288          163 VIFG-SPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLV  208 (240)
Q Consensus       163 ~l~~-~~~~~~l~Gi~~Ghly~~l~~i~P~~~g~~~l~tP~~~~~l~  208 (240)
                      ++.+ +....+++|+.+||+..++.+++|.. |++...||.|..+++
T Consensus       170 fl~~~g~~i~~vlGf~~g~~~h~~g~I~~mi-~r~~~~t~~~~~~~~  215 (313)
T COG5291         170 FLSRRGISIDDVLGFVVGHLFHYFGDIYPMI-GRDILSTPCWVKKLF  215 (313)
T ss_pred             HHhcCCccceeeeeeeeccccccccchhhhh-hcccCCCcccccccc
Confidence            9998 66799999999999999999999986 334444444444433

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.70  E-value=3.5e-16  Score=134.15  Aligned_cols=177  Identities=18%  Similarity=0.312  Sum_probs=135.5

Q ss_pred             ChHHHHhccChHHHHHHHHHHHHHHHHhcCcccccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHH
Q 026288            3 SPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVN   82 (240)
Q Consensus         3 ~~~~~~~~iPpvTR~~~~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~   82 (240)
                      ...++...+|..|-.....+.++.+.+.+..+.  ...+.+...++|.|+||++|+.++|.+ -+|+++||..++..+++
T Consensus         6 ~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s-~~hllfnmlaL~~~g~~   82 (258)
T KOG2632|consen    6 RVGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLS-LPHLLFNMLALWPLGSQ   82 (258)
T ss_pred             cCccccccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHhchhH
Confidence            456788899999998888888888877654444  455667777788999999999999986 89999999999999999


Q ss_pred             hccCCCCCCchhHHHHHHHHHH----HHHHHHHhhhhccc--c----hH-HHHHHHHHHHHhhcCCCceeEEEEeecccc
Q 026288           83 LEKGPFERRTADFLWMMIFGAL----SLLVLSAIPIFRSY--F----LG-ISLVFMLVYVWSREFPNSQINIYGLVTLKA  151 (240)
Q Consensus        83 LE~~~f~~~~~dyl~~ll~~~~----~i~~~s~~~~~~~~--~----l~-~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a  151 (240)
                      .|+.+.  .++-++.+..+.++    +.+++... +....  .    -| +...++..-+-+-+.|....+++|.+.+|+
T Consensus        83 fE~~~G--~t~~~l~~~~llalf~gIl~ll~~~~-~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~  159 (258)
T KOG2632|consen   83 FERTHG--TTVRILMFTVLLALFSGILYLLAYHV-FLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPI  159 (258)
T ss_pred             HHhhcc--ceehHHHHHHHHHHHHHHHHHHHHHH-HhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccH
Confidence            999984  35566655543322    22222211 11111  1    12 355667777778888999999999999999


Q ss_pred             cchHHHHHHH-HHHhCC-CchhHHHHHHHHHHHHHH
Q 026288          152 FYLPWAMLAL-DVIFGS-PLVPDLLGIIAGHLYYFL  185 (240)
Q Consensus       152 ~ylP~~~l~~-~~l~~~-~~~~~l~Gi~~Ghly~~l  185 (240)
                      ++.||++++. +++.++ |++.|++|+++|+.|-+.
T Consensus       160 ~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  160 VLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            9999999987 577775 789999999999999984

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.24  E-value=7.9e-11  Score=103.80  Aligned_cols=166  Identities=21%  Similarity=0.298  Sum_probs=104.4

Q ss_pred             ccChHHHHHHHHHHHHHHHHhcCcccc--cceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCC
Q 026288           10 SLPPICKAYGTLCVAVATVCSLGLLDL--SILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGP   87 (240)
Q Consensus        10 ~iPpvTR~~~~~~~~~~ll~~~~~~~p--~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~   87 (240)
                      +-.|+|-.++++|+++.++..++-...  ..+.+.. ...+.+|+||++|+.|.|++ .+|++||++.++..|+.+|+..
T Consensus        92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~-~~~~~~q~WRl~T~~flH~~-~~Hl~fNml~l~~lG~~iE~~~  169 (276)
T PRK10907         92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPF-DPSLKFELWRYFTHALLHFS-LLHILFNLLWWWYLGGAVEKRL  169 (276)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccc-cccccCCcHHHHhHHHHhCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            456799999999999998876542221  1222222 22346899999999999997 8999999999999999999886


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHhhhhcccchH-HHHHHH-HHHHH--hhcCCCceeEEEEeecccccchHHHHH--HH
Q 026288           88 FERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFM-LVYVW--SREFPNSQINIYGLVTLKAFYLPWAML--AL  161 (240)
Q Consensus        88 f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~-~~l~~~-l~y~w--s~~~p~~~v~l~g~i~i~a~ylP~~~l--~~  161 (240)
                         ++.+++...+++++...+...+ +.+.++-| ++.+++ +.|.|  .++.|+..+      .+|..++.+..+  ++
T Consensus       170 ---G~~~~l~l~l~s~i~~~~~~~~-~~~~~~gGaSGvVygL~g~~~~~~~~~p~~~~------~lp~~~~~f~llwl~~  239 (276)
T PRK10907        170 ---GSGKLIVITLISALLSGWVQSK-FSGPWFGGLSGVVYALMGYVWLRGERDPQSGI------YLPRGLIAFALLWLVA  239 (276)
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHH-HccchhhHHHHHHHHHHHHHHHHhccccccch------hhhHHHHHHHHHHHHH
Confidence               3556776666666554444432 22333433 333443 34555  445565332      223333332222  11


Q ss_pred             HH--HhCCCc--hhHHHHHHHHHHHHHHHh
Q 026288          162 DV--IFGSPL--VPDLLGIIAGHLYYFLTV  187 (240)
Q Consensus       162 ~~--l~~~~~--~~~l~Gi~~Ghly~~l~~  187 (240)
                      .+  +.+.++  ..|+.|.++|.+.-+++.
T Consensus       240 g~~~~~g~~Ian~AHlgGli~Gll~g~~~~  269 (276)
T PRK10907        240 GYFDLFGMSIANAAHVAGLAVGLAMAFWDT  269 (276)
T ss_pred             HHHHccCcccHHHHHHHHHHHHHHHHHHhh
Confidence            12  123333  999999999999887764

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.09  E-value=1.5e-09  Score=92.92  Aligned_cols=171  Identities=23%  Similarity=0.259  Sum_probs=124.7

Q ss_pred             cChHHHHHHHHHHHHHHHHhcCccccc--------ceeeehHhhhhhc---cchhhhhhhhccCcccHHHHHHHHHHHHH
Q 026288           11 LPPICKAYGTLCVAVATVCSLGLLDLS--------ILALEYKLVFSKF---QVWRLITNFFFLGTFSINFGIRLLMIARY   79 (240)
Q Consensus        11 iPpvTR~~~~~~~~~~ll~~~~~~~p~--------~l~l~~~~v~~~~---q~WRLiT~~f~~g~~~~~~lf~l~~l~~~   79 (240)
                      .|++|+..+..++++.+..........        .....+.......   |+||++|+.|.|++ -.|+++|+..++.+
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~-~~Hll~N~~~l~~f   94 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAG-FLHLLFNMLALWVF   94 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence            489999999999999888754322111        0122222222222   89999999999987 89999999999999


Q ss_pred             hHHhccCCCCCCchhHHHHHHHHHHHHHHHHHhhhhc---ccchH-HHHHHHHHHHHhhcCCCceeEEEEe-ecccccch
Q 026288           80 GVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFR---SYFLG-ISLVFMLVYVWSREFPNSQINIYGL-VTLKAFYL  154 (240)
Q Consensus        80 ~~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~---~~~l~-~~l~~~l~y~ws~~~p~~~v~l~g~-i~i~a~yl  154 (240)
                      ++.+|+...   +..|+.+.+.+++...+.... +.+   .+..| ++.++.++-.++...|..+...... ++.++..+
T Consensus        95 g~~le~~~G---~~~f~~~yl~~gl~~~~~~~~-~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
T COG0705          95 GSNLERRLG---TLRFLLFYLLSGLLAGLAQVL-FGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALIL  170 (228)
T ss_pred             hHHHHHHhc---hhHHHHHHHHHHHHHHHHHHH-HcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHH
Confidence            999999873   445877777776665555433 211   24555 5678888888999999988887755 67777777


Q ss_pred             HHHHHHHHHHhCC-C------chhHHHHHHHHHHHHHHH
Q 026288          155 PWAMLALDVIFGS-P------LVPDLLGIIAGHLYYFLT  186 (240)
Q Consensus       155 P~~~l~~~~l~~~-~------~~~~l~Gi~~Ghly~~l~  186 (240)
                      -.+.++.+++++. +      ...|+.|++.|-+|....
T Consensus       171 i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~  209 (228)
T COG0705         171 ILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALL  209 (228)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777888762 2      499999999999998654

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.05  E-value=1.6e-09  Score=95.51  Aligned_cols=97  Identities=18%  Similarity=0.175  Sum_probs=71.3

Q ss_pred             ccChHHHHHHHHHHHHHHHHhc-C---ccccc-----ce-eeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHH
Q 026288           10 SLPPICKAYGTLCVAVATVCSL-G---LLDLS-----IL-ALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARY   79 (240)
Q Consensus        10 ~iPpvTR~~~~~~~~~~ll~~~-~---~~~p~-----~l-~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~   79 (240)
                      ++|.+|..++++.+++.++... +   ...|.     ++ ..+++.+ +++|+||++|+.|.|++ .+|+++|++++|..
T Consensus        51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~-~~HLl~Nm~~l~~~  128 (278)
T PTZ00101         51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHAN-IFHTFFNVFFQLRM  128 (278)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccC-HHHHHHHHHHHHHH
Confidence            6789999999999988877543 2   12232     12 2345555 56899999999999987 99999999999999


Q ss_pred             hHHhccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 026288           80 GVNLEKGPFERRTADFLWMMIFGALSLLVLSA  111 (240)
Q Consensus        80 ~~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s~  111 (240)
                      |+.+|+...   +..|+...+++++.-.+++.
T Consensus       129 G~~lE~~~G---~~r~~ilYl~sGi~G~l~s~  157 (278)
T PTZ00101        129 GFTLEKNYG---IVKIIILYFLTGIYGNILSS  157 (278)
T ss_pred             HHHHHHHHC---hHHHHHHHHHHHHHHHHHHH
Confidence            999999873   45677444555555455454

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.94  E-value=1.2e-09  Score=86.54  Aligned_cols=133  Identities=25%  Similarity=0.324  Sum_probs=80.1

Q ss_pred             hhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCCCCCCchhHHHHHHHHHHHHHHHHHhhhhc-c-cchH-HHH
Q 026288           48 SKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFR-S-YFLG-ISL  124 (240)
Q Consensus        48 ~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~-~-~~l~-~~l  124 (240)
                      +++|+||++|+.|.|.+ ..|+++|++.++.++..+|+..   ++.++....+.++++..+.+.. ..+ . +..| ++.
T Consensus         2 ~~~~~wrl~T~~f~h~~-~~hl~~n~~~l~~~g~~lE~~~---G~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~G~Sg~   76 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHAN-FLHLLFNLLALWFFGSLLERRL---GSRRFLALYLLSGLLGSLLSLL-FSPPNQPYVGASGA   76 (145)
T ss_dssp             GCC-TTHHHHGGG--SS-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HH-S-----SSHHH
T ss_pred             CCCcchhhhHHHHHccC-HHHHHHHHHHHHHhhhhHhhhc---cchHHHHHHHHHHHhhhhcccc-ccccccccCCCccc
Confidence            57899999999999986 9999999999999999999986   3446665555555544444432 112 2 2343 445


Q ss_pred             HHHHHHHHhhcCCCceeEE---EEeecccccchHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Q 026288          125 VFMLVYVWSREFPNSQINI---YGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLT  186 (240)
Q Consensus       125 ~~~l~y~ws~~~p~~~v~l---~g~i~i~a~ylP~~~l~~~~l~~~~~~~~l~Gi~~Ghly~~l~  186 (240)
                      ++++.-......|+.+...   ...+.+...++++.+.... ....+...|+.|+++|.+|.+..
T Consensus        77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~  140 (145)
T PF01694_consen   77 VFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLI  140 (145)
T ss_dssp             HHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Confidence            5555555444444332221   2233444444554433222 22245699999999999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=6.1e-08  Score=83.44  Aligned_cols=191  Identities=20%  Similarity=0.331  Sum_probs=117.4

Q ss_pred             HHHhccChHHHHHHHHHHHHHHHHhcCcccccceeeehHhhhhh-ccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhc
Q 026288            6 EYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSK-FQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLE   84 (240)
Q Consensus         6 ~~~~~iPpvTR~~~~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~-~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE   84 (240)
                      .-+.++| |||..++.+...++...+.-.++ .+.++++..+.+ +|+||++-+-|.+.+ .-++.+.++.+| +-+.+|
T Consensus         6 ~g~~nmp-VTK~~~iT~~~~~vvagI~~~k~-~f~l~y~~~l~~y~qywrlL~~qF~~~n-~~e~~~~l~I~Y-~fR~~E   81 (323)
T KOG4463|consen    6 SGFHNMP-VTKAFVITSALFTVVAGIQGRKS-KFGLSYQDILEKYFQYWRLLMSQFAFSN-TPELMFGLYILY-YFRVFE   81 (323)
T ss_pred             Ccccccc-hHHHHHHHHHHHHHHHHhhhccc-ccccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHH-HHHHHH
Confidence            4456775 99999999999988887654555 567777777765 899999999999875 888999999888 779999


Q ss_pred             cCCCCCCchhHHHHHHHHHHHHHHHH----Hh---hhhcccchH-HHHHHHHHHHHhhcCCC-ceeEEEEeecccccc--
Q 026288           85 KGPFERRTADFLWMMIFGALSLLVLS----AI---PIFRSYFLG-ISLVFMLVYVWSREFPN-SQINIYGLVTLKAFY--  153 (240)
Q Consensus        85 ~~~f~~~~~dyl~~ll~~~~~i~~~s----~~---~~~~~~~l~-~~l~~~l~y~ws~~~p~-~~v~l~g~i~i~a~y--  153 (240)
                      +...   +.+|+.++++.++...+..    .+   ...+.-..+ .+++++..|-+--.-|- .-+..|+ +++..|.  
T Consensus        82 RlLG---Shky~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~~qp~~liFa~~~~~y~~ip~~~f~r~f~-~~f~dkni~  157 (323)
T KOG4463|consen   82 RLLG---SHKYSVFIVFSGTVSLLLEVILLSLLKDTTANLLTSQPYGLIFASFIPFYLDIPVSTFFRVFG-VNFSDKNIS  157 (323)
T ss_pred             HHhc---cccceeehhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeeeeccceEEEecceeEEEeec-cccccccee
Confidence            9863   4456666665544333222    11   001111121 13555555544444443 3345565 3666653  


Q ss_pred             -hHHHHHHHHHHhC----C-------CchhHHHHHHHHHHHHHHHhhccCCCCCCCcCChHHHHHhhhh
Q 026288          154 -LPWAMLALDVIFG----S-------PLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVAR  210 (240)
Q Consensus       154 -lP~~~l~~~~l~~----~-------~~~~~l~Gi~~Ghly~~l~~i~P~~~g~~~l~tP~~~~~l~~~  210 (240)
                       +|..=++++.-..    .       ++.-.+.|++.||+|..-      ..|...-++|.++-..+++
T Consensus       158 ~i~~~G~a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~~------~agi~~~~~~~~~~~f~d~  220 (323)
T KOG4463|consen  158 FIYLAGVALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRLN------IAGIRKAKFPEFVASFFDR  220 (323)
T ss_pred             eecccchhhhcCcccccccccceeecccccccchhhhhhHhhcc------cccccccccHHHHHhhhcc
Confidence             3322222222211    1       235667899999999753      2344555666666666655

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=97.94  E-value=7.3e-05  Score=65.95  Aligned_cols=176  Identities=18%  Similarity=0.169  Sum_probs=113.9

Q ss_pred             HhccChHHHHHHHHHHHHHHHHhcC-----cccccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHH
Q 026288            8 YHSLPPICKAYGTLCVAVATVCSLG-----LLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVN   82 (240)
Q Consensus         8 ~~~iPpvTR~~~~~~~~~~ll~~~~-----~~~p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~   82 (240)
                      ..+.-++-+.++.+++...+.+..+     ...| .+.+-|.+++  +++|+++|+.|+- ..-++.+.+...+.-.|+.
T Consensus        21 l~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p-~y~lvp~~~~--~~~WtliTs~fie-~~vw~V~~sv~~L~v~G~~   96 (326)
T KOG2890|consen   21 LLNLEVVVSAICVLTLFGYILSFGNFTILLATLP-GYQLVPNALF--FFPWTLITSGFIE-LNVWDVLVSVLTLSVGGKF   96 (326)
T ss_pred             hhhchhHHHHHHHHHHHHHHHHHHHhHHHHHhcc-ccccCCcchh--hhhHHHHhcchhh-hhHHHHHHHHHheeeccee
Confidence            3344455666665655555554321     1222 2344455555  5999999999875 4589999999999999999


Q ss_pred             hccCCCCCCchhHHHHHHH-HHHHHH---HHHHhhh--h-c-----ccchH-HHHHHHHHHHHhhcCCCceeEEEEeecc
Q 026288           83 LEKGPFERRTADFLWMMIF-GALSLL---VLSAIPI--F-R-----SYFLG-ISLVFMLVYVWSREFPNSQINIYGLVTL  149 (240)
Q Consensus        83 LE~~~f~~~~~dyl~~ll~-~~~~i~---~~s~~~~--~-~-----~~~l~-~~l~~~l~y~ws~~~p~~~v~l~g~i~i  149 (240)
                      +|..+.   +.+++.+..+ .++..+   +.+.+.+  . +     .+.-| .+....+..+|-+..|+..+.---.-++
T Consensus        97 lEp~Wg---~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r~  173 (326)
T KOG2890|consen   97 LEPNWG---SLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSGRF  173 (326)
T ss_pred             eccCCC---CHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccchhh
Confidence            999983   3455544333 322222   1121111  1 1     23333 4788889999999999998864422344


Q ss_pred             cccchHHHHHHHHHHhC-------CCchhHHHHHHHHHHHHHHHhhcc
Q 026288          150 KAFYLPWAMLALDVIFG-------SPLVPDLLGIIAGHLYYFLTVLHP  190 (240)
Q Consensus       150 ~a~ylP~~~l~~~~l~~-------~~~~~~l~Gi~~Ghly~~l~~i~P  190 (240)
                      .++-+|...++++++..       .++..-..|..++..|.++..-.|
T Consensus       174 ~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~  221 (326)
T KOG2890|consen  174 LYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHP  221 (326)
T ss_pred             hhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCC
Confidence            44559998887766543       345777799999999998876666

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=97.57  E-value=5.8e-05  Score=67.62  Aligned_cols=137  Identities=18%  Similarity=0.157  Sum_probs=81.0

Q ss_pred             hHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCCCCCCchhHHHHHHHHHHHHHHHHHhhhhcccchH-
Q 026288           43 YKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-  121 (240)
Q Consensus        43 ~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~-  121 (240)
                      +.+..++.|+||++|+.+.|.+ .+|+.+|+......|-.||+.+..-|  =.+.|++ +++.=.+++.+.--+.+..| 
T Consensus       110 i~~~~~r~E~WRllTym~LHaG-i~HL~~N~~~ql~iGi~LE~~~G~~R--iglIYl~-gg~aGSlls~l~d~~~~sVGA  185 (316)
T KOG2289|consen  110 IYKPVHRGELWRLLTYMWLHAG-IFHLLLNMLSQLFIGIPLEQVHGFLR--IGLIYLA-GGVAGSLLSSLFDPNSISVGA  185 (316)
T ss_pred             ecChhhhchhHHHHHHHHHhcC-HHHHHHHHHHHHhccccHHhhcCceE--Eeeehhh-hhhhhHHHHHHhccCCceecc
Confidence            3455678999999999999987 99999999999999999999873212  2233333 32222233332111111222 


Q ss_pred             --------HHHHHHHHHHHhhcCCCceeEEEEeecccccchHHHHHHHHHHhCC----CchhHHHHHHHHHHHHHHHhhc
Q 026288          122 --------ISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS----PLVPDLLGIIAGHLYYFLTVLH  189 (240)
Q Consensus       122 --------~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~~~~l~~~----~~~~~l~Gi~~Ghly~~l~~i~  189 (240)
                              .+.+..++--|........          +.-.-.+++++++-++.    +.+.|+.|...|-.+-|+..+-
T Consensus       186 SggvfaLlgA~Ls~l~~Nw~~m~~~~~----------~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~  255 (316)
T KOG2289|consen  186 SGGVFALLGAHLSNLLTNWTIMKNKFA----------ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIG  255 (316)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHhcchHH----------HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhc
Confidence                    2333344444554433211          11122233344555553    3367888888888888887777


Q ss_pred             cCCC
Q 026288          190 PLAT  193 (240)
Q Consensus       190 P~~~  193 (240)
                      |..+
T Consensus       256 g~~~  259 (316)
T KOG2289|consen  256 GQLG  259 (316)
T ss_pred             ccee
Confidence            7643

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=96.88  E-value=0.0014  Score=49.14  Aligned_cols=56  Identities=23%  Similarity=0.194  Sum_probs=46.3

Q ss_pred             cchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCCCCCCchhHHHHHHHHHHHHHHHH
Q 026288           51 QVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLS  110 (240)
Q Consensus        51 q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s  110 (240)
                      .+|+++|+.|+..+ .+.++++...+...++.+|+.+.   +.+++.|+++..+...++.
T Consensus         7 ~pWtl~T~~fve~~-i~~~l~~~~~l~~~g~~lE~~WG---s~E~lkFi~vv~~~tnl~~   62 (99)
T PF08551_consen    7 YPWTLFTAGFVETN-IIGLLFSLLTLFYGGRYLEPIWG---SREFLKFILVVNVITNLLT   62 (99)
T ss_pred             ehHHHHHHHHHHhH-HHHHHHHHHHHHHhhHHHHHhcC---hHHHHHHHHHHHHHhHHHH
Confidence            79999999999764 89999999999999999999983   5588888877665544443

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=88.30  E-value=0.44  Score=44.87  Aligned_cols=37  Identities=22%  Similarity=0.222  Sum_probs=33.7

Q ss_pred             ccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCC
Q 026288           50 FQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGP   87 (240)
Q Consensus        50 ~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~   87 (240)
                      -|++||+||.|.|.+ -+|.+..+.+=+...+.||+-.
T Consensus       449 dQfYRL~~SLFlHag-viH~~vSi~FQm~vmrdlEkL~  485 (652)
T KOG2290|consen  449 DQFYRLWLSLFLHAG-VIHLLVSICFQMTVMRDLEKLA  485 (652)
T ss_pred             hHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHhh
Confidence            499999999999987 8999999999898999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.63
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.46

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.63  E-value=1.5e-15  Score=124.78  Aligned_cols=167  Identities=17%  Similarity=0.196  Sum_probs=113.0

Q ss_pred             ccChHHHHHHHHHHHHHHHHhcCccc--ccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCC
Q 026288           10 SLPPICKAYGTLCVAVATVCSLGLLD--LSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGP   87 (240)
Q Consensus        10 ~iPpvTR~~~~~~~~~~ll~~~~~~~--p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~   87 (240)
                      +.||+|+.++++++++.++....-..  ..++.++++. .++.|+||++|+.|.|++ ..|+++||+.++.+++.+|+..
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~-~~Hl~~Nm~~l~~~g~~~E~~~   79 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKRL   79 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHHh
Confidence            57999999999999999987653211  1245566654 456899999999999987 7999999999999999999986


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHhhhhcccchH-HHHHHHHH---HHHhhcCCCceeEEEEeecccccchHHHHHHHHH
Q 026288           88 FERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFMLV---YVWSREFPNSQINIYGLVTLKAFYLPWAMLALDV  163 (240)
Q Consensus        88 f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~-~~l~~~l~---y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~~~~  163 (240)
                         ++.+|+.+.+.+++...+.+.. +.+.+..| ++.+++++   .+.++++|+.++.    ++.+...+-.+.+++++
T Consensus        80 ---G~~~fl~~yl~~~i~~~l~~~~-~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~~~~~~~~~~~  151 (181)
T 2xov_A           80 ---GSGKLIVITLISALLSGYVQQK-FSGPWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLIIFALIWIVAGW  151 (181)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHHHHHHHHHHHH
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHH-hcCCCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHHHHHHHHHHHH
Confidence               3567887777666665555543 22233444 33333322   2346788887653    23333333223334454


Q ss_pred             Hh----CCCchhHHHHHHHHHHHHHHH
Q 026288          164 IF----GSPLVPDLLGIIAGHLYYFLT  186 (240)
Q Consensus       164 l~----~~~~~~~l~Gi~~Ghly~~l~  186 (240)
                      ..    +-+...|+.|+++|.++..+.
T Consensus       152 ~~~~~~~v~~~aHlgG~l~G~l~~~~~  178 (181)
T 2xov_A          152 FDLFGMSMANGAHIAGLAVGLAMAFVD  178 (181)
T ss_dssp             TTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccchHHHHHHHHHHHHHHHHHH
Confidence            43    234699999999999987653

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.46  E-value=3.1e-13  Score=112.31  Aligned_cols=167  Identities=16%  Similarity=0.236  Sum_probs=112.5

Q ss_pred             hccChHHHHHHHHHHHHHHHHhcCccc--ccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccC
Q 026288            9 HSLPPICKAYGTLCVAVATVCSLGLLD--LSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKG   86 (240)
Q Consensus         9 ~~iPpvTR~~~~~~~~~~ll~~~~~~~--p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~   86 (240)
                      .+.||+|+.++++++++.++....-..  ..++.++++.+ .+.|+||++|+.|.|++ ..|+++||+.++..++.+|+.
T Consensus         6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~-~~Hl~~Nm~~l~~~G~~lE~~   83 (196)
T 2nr9_A            6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERT   83 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999999999987653111  12455677665 56899999999999987 899999999999999999998


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhhhhcccchH-HHHHHHHH---HHHhhcCCCceeEEEEeecccccchHHHHHHHH
Q 026288           87 PFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFMLV---YVWSREFPNSQINIYGLVTLKAFYLPWAMLALD  162 (240)
Q Consensus        87 ~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~-~~l~~~l~---y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~~~  162 (240)
                      .   ++.+|+.+.+.+++...+.+.. +.+....| ++.+++++   .+..+.+|+. +    .++.+...+-.+.++++
T Consensus        84 ~---G~~~~l~~yl~~~~~~~l~~~~-~~~~~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~  154 (196)
T 2nr9_A           84 F---GSVKLLMLYVVASAITGYVQNY-VSGPAFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFFTMLLVGIALG  154 (196)
T ss_dssp             H---CHHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSSTTTTTTTTTHH
T ss_pred             H---ChHHHHHHHHHHHHHHHHHHHH-hcCCCeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHHHHHHHHHHHH
Confidence            6   3557876666666655554443 22223333 33333322   1234566665 2    13445444433344455


Q ss_pred             HHhC-----CCchhHHHHHHHHHHHHHHH
Q 026288          163 VIFG-----SPLVPDLLGIIAGHLYYFLT  186 (240)
Q Consensus       163 ~l~~-----~~~~~~l~Gi~~Ghly~~l~  186 (240)
                      ++..     -+...|+.|+++|.++-.+.
T Consensus       155 ~~~~~~~~~v~~~aHlgG~l~G~l~~~~~  183 (196)
T 2nr9_A          155 FISPLFGVEMGNAAHISGLIVGLIWGFID  183 (196)
T ss_dssp             HHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence            5542     25599999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.48
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.48

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.48  E-value=2.5e-14  Score=116.12  Aligned_cols=171  Identities=16%  Similarity=0.177  Sum_probs=108.4

Q ss_pred             HhccChHHHHHHHHHHHHHHHHhcCcccc-cceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccC
Q 026288            8 YHSLPPICKAYGTLCVAVATVCSLGLLDL-SILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKG   86 (240)
Q Consensus         8 ~~~iPpvTR~~~~~~~~~~ll~~~~~~~p-~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~   86 (240)
                      +.+.||+|..++++|+++.++...+...+ ..+...+....+++|+||++|+.|.|++ ..|+++|++.++..++.+|+.
T Consensus         2 l~~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~-~~Hl~~N~~~l~~~g~~~E~~   80 (189)
T d2nr9a1           2 LAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERT   80 (189)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999998887653333 2233333445567899999999999987 899999999999999999998


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhhhhcccchH-HHHHHHHHHHHhhcCCCceeEEEEeecccccchHH--HHHHHHH
Q 026288           87 PFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPW--AMLALDV  163 (240)
Q Consensus        87 ~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~-~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a~ylP~--~~l~~~~  163 (240)
                      .   ++.+++...+.+++...+++.. ..+.+..| ++.++++.-.+....+..+.. +   .++.+....  +.+++.+
T Consensus        81 ~---G~~~~~~~~~~~~~~~~l~~~~-~~~~~~vGaSG~v~gl~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~  152 (189)
T d2nr9a1          81 F---GSVKLLMLYVVASAITGYVQNY-VSGPAFFGLSGVVYAVLGYVFIRDKLNHHL-F---DLPEGFFTMLLVGIALGF  152 (189)
T ss_dssp             H---CHHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHSSTTS-C---CCCCSSTTTTTTTTTHHH
T ss_pred             H---HHHhhhhHHHHHHHHHHHHHHh-cCCCCcccchHHHHHHHHHHHHHHHHhhhH-h---ccHHHHHHHHHHHHHHHH
Confidence            6   3557765555555444444432 22344454 344555443332222222211 1   122222222  2223344


Q ss_pred             HhC-----CCchhHHHHHHHHHHHHHHHh
Q 026288          164 IFG-----SPLVPDLLGIIAGHLYYFLTV  187 (240)
Q Consensus       164 l~~-----~~~~~~l~Gi~~Ghly~~l~~  187 (240)
                      +..     -+...|+.|+++|.++.++..
T Consensus       153 ~~~~~~~~v~~~aHl~G~l~G~~~g~~~~  181 (189)
T d2nr9a1         153 ISPLFGVEMGNAAHISGLIVGLIWGFIDS  181 (189)
T ss_dssp             HSCSSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence            433     134899999999999987653

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=5.4e-14  Score=113.02  Aligned_cols=169  Identities=16%  Similarity=0.154  Sum_probs=102.5

Q ss_pred             hccChHHHHHHHHHHHHHHHHhcCcccc--cceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccC
Q 026288            9 HSLPPICKAYGTLCVAVATVCSLGLLDL--SILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKG   86 (240)
Q Consensus         9 ~~iPpvTR~~~~~~~~~~ll~~~~~~~p--~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~   86 (240)
                      ++.+|+|..+++.++++.++....-..+  ..+.++.+.+ +++|+||++|+.|.|++ ..|+++|++.++..++.+|+.
T Consensus         1 ~r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~-~~g~~wrl~T~~f~H~~-~~Hl~~N~~~l~~~G~~lE~~   78 (180)
T d3b45a1           1 ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPT-LKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKR   78 (180)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGG-GTTCGGGGTGGGGCCCS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCccc-ccCchHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHh
Confidence            3679999999999999888765321111  2233444444 56899999999999986 999999999999999999998


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhhhhcccchH-HHHHHHHHH---HHhhcCCCceeEEEEeecccccchHHHHHHHH
Q 026288           87 PFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFMLVY---VWSREFPNSQINIYGLVTLKAFYLPWAMLALD  162 (240)
Q Consensus        87 ~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~-~~l~~~l~y---~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~~~  162 (240)
                      .   ++.+++...+.+++.-.+.+.. +.+....| ++.++++.-   ....++|...   . ..+......-++.+...
T Consensus        79 ~---G~~~~~~~~~~~~~~g~l~~~~-~~~~~~~G~sg~i~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~  150 (180)
T d3b45a1          79 L---GSGKLIVITLISALLSGYVQQK-FSGPWFGGLSGVVYALMGYVWLRGERDPQSG---I-YLQRGLIIFALIWIVAG  150 (180)
T ss_dssp             H---CHHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHHCGGGS---C-CCCHHHHHHHHHHHHHH
T ss_pred             c---cchhheeeeeHHHHHHHHHHHH-HhccccccccchHHHHHHHHHHHhhhcchhH---H-hhHHHHHHHHHHHHHHH
Confidence            6   3456766666665554444443 22333332 222223222   2222333221   1 11222222222222222


Q ss_pred             HHhC--C--CchhHHHHHHHHHHHHHHHh
Q 026288          163 VIFG--S--PLVPDLLGIIAGHLYYFLTV  187 (240)
Q Consensus       163 ~l~~--~--~~~~~l~Gi~~Ghly~~l~~  187 (240)
                      +...  .  +...|+.|+++|.++.+..+
T Consensus       151 ~~~~~~~~v~~~aHlgG~l~G~~~~~~~~  179 (180)
T d3b45a1         151 WFDLFGMSMANGAHIAGLAVGLAMAFVDS  179 (180)
T ss_dssp             HTTSSCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhccCchHHHHHHHHHHHHHHHHHHHH
Confidence            2221  1  34899999999999998765