Citrus Sinensis ID: 026311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAENPLLS
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHccccccccccccEEEEHHHHHHHHHHHHHHHcccccccccccccccccccccEEEccEEEEEHHHHHHHHHEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccccccHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccccccccccc
Coil and Loop (DISEMBL)
matampnlapGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMglmhstapaqetsvntpniifdreKIIGCVYLLAAVFVLSSTVVLQaatlgdfpapmslcAITSLIGVFVTTVVELLQNhkldfgwefvglpetmSYIALGGMINGVCQSFNAwaikkrgpvfvsmfSPIATVISVILSAItlgdsidigsLSGMFLMFAGLYYVLWAKgkenysnigsesesdaenplls
Flexible Loop (DISEMBL)
matampnlapGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHstapaqetsvnTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENysnigsesesdaenplls
Low Complexity Region (SEG)
MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAENPLLS
Disordered region (IsUnstruct)
*******LAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGK********************
Disordered Region (DISOPRED)
MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA*******************PLL*
Disordered Region (DISEMBL)
MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSN***************
Disordered Region (DISPRO)
MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQET*********DREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG*********************
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAENPLLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q9FGL0	364	WAT1-related protein At5g	yes	no	1.0	0.659	0.611	2e-80
F4JMI7	359	WAT1-related protein At4g	no	no	0.987	0.660	0.5	2e-58
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.954	0.602	0.335	2e-24
Q56X95	355	WAT1-related protein At3g	no	no	0.983	0.664	0.306	3e-24
O80638	374	WAT1-related protein At2g	no	no	0.966	0.620	0.322	7e-24
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.916	0.536	0.311	9e-24
Q9FNA5	377	WAT1-related protein At5g	no	no	0.912	0.580	0.301	6e-23
Q9LV20	383	WAT1-related protein At3g	no	no	0.945	0.592	0.293	9e-23
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.920	0.568	0.285	2e-22
Q945L4	339	WAT1-related protein At5g	no	no	0.95	0.672	0.302	2e-22

>sp|Q9FGL0|WTR44_ARATH WAT1-related protein At5g47470 OS=Arabidopsis thaliana GN=At5g47470 PE=3 SV=1

 Score =  298 bits (763), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 148/242 (61%), Positives = 183/242 (75%), Gaps = 2/242 (0%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           MATAMPNLAPGLIF IAW   LEK+ L C+YSK+KILGTLLCV GA+ M +MHST+ + +
Sbjct: 123 MATAMPNLAPGLIFFIAWIVGLEKMNLKCVYSKLKILGTLLCVFGALAMSVMHSTSISHK 182

Query: 61  TSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVT 120
              +TP  +FDR+K++GC+YLL AVFVLS+ VVLQA+TL +FPAP+SL AIT+L+GV +T
Sbjct: 183 EEDDTPIFVFDRDKVVGCIYLLGAVFVLSTNVVLQASTLAEFPAPISLSAITALLGVLIT 242

Query: 121 TVVELLQNHKLD-FGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPI 179
           TVV LLQN K        +     + Y  L G ++G C SFN WA+KKRGPVFVSMFSP 
Sbjct: 243 TVVLLLQNRKTKVLASSLISFGNLVGYSVLAGAVSGACVSFNGWAMKKRGPVFVSMFSPF 302

Query: 180 ATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGS-ESESDAENPL 238
           ATVISV  + +TLG+S+ +GS+ GM LMF GLY VLWAKGKE +S I S ESE D++ PL
Sbjct: 303 ATVISVAFAVLTLGESVSLGSVGGMVLMFVGLYLVLWAKGKEGFSEIESFESEFDSKKPL 362

Query: 239 LS 240
           LS
Sbjct: 363 LS 364

Arabidopsis thaliana (taxid: 3702)

>sp|F4JMI7|WTR34_ARATH WAT1-related protein At4g16620 OS=Arabidopsis thaliana GN=At4g16620 PE=2 SV=1

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 122/244 (50%), Positives = 171/244 (70%), Gaps = 7/244 (2%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           MATAMPNL P  IF+IAW   +EKVKLSC+YS+VK+ GT+LCV+GA+ M LMHST  A  
Sbjct: 105 MATAMPNLCPAFIFVIAWAAGMEKVKLSCMYSRVKMGGTVLCVMGALIMSLMHSTT-ATL 163

Query: 61  TSVNT-----PNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLI 115
           +SV T       ++ D++KI+GC+YLL A+  LSS++VLQA+ L +FPAP+S+ ++ SL+
Sbjct: 164 SSVKTIPIVPDEVVVDKDKILGCLYLLLAICGLSSSIVLQASILAEFPAPISMFSMVSLM 223

Query: 116 GVFVTTVVELLQNHKLDFG-WEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVS 174
           G   T  ++      ++ G    +GL   + Y  LGG+++G   SFNAW IK++GPV VS
Sbjct: 224 GGITTVALQYALKGSMEMGSASVIGLGHLVGYAILGGLVSGGGLSFNAWVIKRKGPVIVS 283

Query: 175 MFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDA 234
           +FSPIATV+ V++SA T+ +S ++GS +GM LMF GLY+VLWAKGKE+   I    + D 
Sbjct: 284 LFSPIATVVCVVVSAFTMEESFNLGSFAGMALMFGGLYFVLWAKGKEDCEEIDEMKQDDE 343

Query: 235 ENPL 238
           E+ L
Sbjct: 344 ESLL 347

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 126/253 (49%), Gaps = 24/253 (9%)

Query: 2   ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE- 60
           ATAM N+ P + F++A+ F LE+VKL C+ S  K++GTL  V GA+ M L+    P  + 
Sbjct: 108 ATAMYNVLPAITFVLAYIFGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVK--GPVLDL 165

Query: 61  ------TSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSL 114
                 ++ NT         I G V +    F  +  ++LQA TL  +PA +SL A   L
Sbjct: 166 FWTKGVSAHNTAGTDI-HSAIKGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICL 224

Query: 115 IGVFVTTVVELLQNH----KLDFGWEFVGLPETMSYI---ALGGMINGVCQSFNAWAIKK 167
           +G    T V L+           GW+   L  T S I   AL   + GV        +K 
Sbjct: 225 MGTIEGTAVALVMEKGNPSAWAIGWDTKLLTATYSGIVCSALAYYVGGV-------VMKT 277

Query: 168 RGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIG 227
           RGPVFV+ FSP+  +I  I+S I   + + +G + G  ++ AGLY V+W KGK+   N  
Sbjct: 278 RGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKDYKYNST 337

Query: 228 SESESDAENPLLS 240
            + + ++  P L 
Sbjct: 338 LQLDDESAQPKLE 350

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 129/248 (52%), Gaps = 12/248 (4%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           +A+A+ N+ P + FI+A  FR+EK       S  K++GT++ +VGA+ + L H       
Sbjct: 105 LASAISNINPAITFILAIIFRMEKASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTP 164

Query: 61  TSVNTPNI--------IFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAIT 112
           +S   P +          + + IIG   L     ++    +LQA  +  +PAP ++    
Sbjct: 165 SSPPFPQLRQLLLPLSSSNSDWIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFY 224

Query: 113 SLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVF 172
            LI   +T+++ ++        W  +    T+  I +GG+ N    + + WA++ +GPV+
Sbjct: 225 FLIASILTSLIGIVAEKNNPSIW-IIHFDITLVCIVVGGIFNPGYYAIHLWAVRNKGPVY 283

Query: 173 VSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESES 232
           +++F P++ +I+VI+ AI LGDS  +GSL G  L+  G Y V+W K KE  +   S SE 
Sbjct: 284 LAIFRPLSILIAVIMGAIFLGDSFYLGSLVGGILISLGFYTVMWGKAKEGKTQFLSLSE- 342

Query: 233 DAENPLLS 240
             E PLL 
Sbjct: 343 --ETPLLD 348

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  110 bits (276), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 10/242 (4%)

Query: 4   AMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHST------AP 57
           AM N+ P   FI+AW FRLEKV +  ++S+ KILGT++ V GA+ M ++         A 
Sbjct: 103 AMTNVLPAFAFIMAWIFRLEKVNVKKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWAN 162

Query: 58  AQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGV 117
             +   ++ N    ++   G   +       +  + LQA TL  +P  +SL A    +G 
Sbjct: 163 PHDIHQDSSNTGVKQDLTKGASLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGS 222

Query: 118 FVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMI-NGVCQSFNAWAIKKRGPVFVSMF 176
             +T+V L         W  + L   +     GG+I +G+        +K RGPVFV+ F
Sbjct: 223 IESTIVALFIERGNPSAWA-IHLDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAF 281

Query: 177 SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAEN 236
           +P++ VI  IL +I L + + +G + G  ++  GLY VLW K K+  S+  S S+ D E 
Sbjct: 282 NPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSKDEPSS--SFSDMDKEL 339

Query: 237 PL 238
           PL
Sbjct: 340 PL 341

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score =  110 bits (275), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 14/234 (5%)

Query: 2   ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLM------HST 55
           A+A+ N  P + FI+A   RLEKV +S      KI+GT+ CV GA  + L       H  
Sbjct: 112 ASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIW 171

Query: 56  APAQETSVN-----TPNIIFDREK--IIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSL 108
            P  E + +       N +  + +   +GC+YLL      S  +VLQA  L  +PA +S+
Sbjct: 172 RPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSV 231

Query: 109 CAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKR 168
            + T   GV    ++       L+  W+     E  + +  G + +G+  S   W I + 
Sbjct: 232 TSFTCFFGVIQFLIIAAFFETDLEH-WKIHSGGELFTILYAGFVASGIAFSVQIWCIDRG 290

Query: 169 GPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKEN 222
           GPVFV+++ P+ T+   I+++I LG+   +G + G  L+  GLY VLW K +E 
Sbjct: 291 GPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEK 344

Pinus taeda (taxid: 3352)

>sp|Q9FNA5|WTR39_ARATH WAT1-related protein At5g13670 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 125/229 (54%), Gaps = 10/229 (4%)

Query: 3   TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHS-------T 55
           +A+ N  P + FI+A  F+LEKV +   +S+ K++GT++ + GA+ M  +         T
Sbjct: 102 SALCNALPAMTFIMACVFKLEKVTIERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWT 161

Query: 56  APAQETSVNTPNIIFDREKII--GCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITS 113
           + ++  + +T  +   ++  I  G + L+A+ F  S  ++LQA  L  + A +SL A+  
Sbjct: 162 SNSRGLNGHTHAMRIPKQADIARGSIMLVASCFSWSCYIILQAKILAQYKAELSLTALMC 221

Query: 114 LIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFV 173
           ++G+   TV+ L+   K    W+ +    T+     GG+++G+      WA K+RGPVFV
Sbjct: 222 IMGMLEATVMGLIWERKNMSVWK-INPDVTLLASIYGGLVSGLAYYVIGWASKERGPVFV 280

Query: 174 SMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKEN 222
           S F+P++ V+  ILS     + + +G + G  ++  G+Y VLW K K+ 
Sbjct: 281 SAFNPLSMVLVAILSTFVFLEKVYVGRVIGSVVIVIGIYLVLWGKSKDK 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  107 bits (266), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 18/245 (7%)

Query: 2   ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQET 61
           A+AM N  P + FI+A   RLE + L   +   K+LGTL+ + GA  + L +   P  + 
Sbjct: 128 ASAMQNSVPAITFIMACALRLEHIDLVRKHGVAKVLGTLVSIGGATVITL-YRGFPIFDQ 186

Query: 62  SVNTPNIIFDREKIIGC----------VYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAI 111
            +N       +E+++G           +YL+      +  +VLQA  L  +PA ++L + 
Sbjct: 187 GLN-----MQKEEVVGSDNSHSLTLGWLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSF 241

Query: 112 TSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPV 171
           T   G+    V+ L     L+  W  V   E  + +  G + +G+      W I K GPV
Sbjct: 242 TCFFGLIQFLVIALFVETDLN-NWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPV 300

Query: 172 FVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESE 231
           FV++F P+ T++   ++ + LGD +  G + G   +  GLY VLW K +E    +  ES+
Sbjct: 301 FVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERKLAL-EESQ 359

Query: 232 SDAEN 236
            D E+
Sbjct: 360 QDPES 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 116/235 (49%), Gaps = 14/235 (5%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGL--------- 51
            A++M N  P + F++A   R+EKV+++      KILGT LCV GA  + L         
Sbjct: 112 FASSMQNSVPAITFLMAALLRIEKVRINRRDGISKILGTALCVAGASVITLYKGPTIYTP 171

Query: 52  ---MHSTAPAQETSVNTP-NIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMS 107
              +H+      ++V  P      +   +GC+YL+      S  +V QA  L  +PA +S
Sbjct: 172 ASHLHAHLLTTNSAVLAPLGNAAPKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPARLS 231

Query: 108 LCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKK 167
           + + T   G+    ++           W F    E  + +  G + +G+  +   W I +
Sbjct: 232 VTSYTCFFGIIQFLIIAAFCERDSQ-AWVFHSGWELFTILYAGIVASGIAFAVQIWCIDR 290

Query: 168 RGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKEN 222
            GPVFV+++ P+ T++  I+++I LG+   +G + G  L+ AGLY+VL+ K +E 
Sbjct: 291 GGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEER 345

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 126/241 (52%), Gaps = 13/241 (5%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           +++AM N+ P   FI+A  FR+E + L    S  K+LGT+L ++GA+ + L H   P   
Sbjct: 105 LSSAMSNVNPAFTFILAVVFRMENISLGKKSSVAKVLGTILSIIGALVVTLYH--GPMLM 162

Query: 61  TSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVT 120
           +S          + IIG   L     ++S + ++ A T+G +P+ + +  + ++    V 
Sbjct: 163 SS--------HSDWIIGGGLLALQYILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVC 214

Query: 121 TVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIA 180
             V LL        W  +    T+  +   G++N      + WA+  +GPV++SMF P++
Sbjct: 215 AFVSLLAEKDNPKAW-VIRFDITLITVVATGILNSGYYVIHTWAVSHKGPVYLSMFKPLS 273

Query: 181 TVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSN-IGSESESDAEN-PL 238
            +I+ + + I LG+S+ +GS+ G  L+  G Y VLW K KE+  + IG+   S + N PL
Sbjct: 274 ILIAAVSTFIFLGESLYLGSVMGGILISIGFYMVLWGKAKEDKVDIIGAIESSPSHNAPL 333

Query: 239 L 239
           L
Sbjct: 334 L 334

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
224138604	327	mtn21-like protein [Populus trichocarpa]	1.0	0.733	0.690	3e-88
449458952	351	PREDICTED: auxin-induced protein 5NG4-li	0.995	0.680	0.634	2e-84
356514322	368	PREDICTED: auxin-induced protein 5NG4-li	1.0	0.652	0.620	9e-84
356563330	355	PREDICTED: LOW QUALITY PROTEIN: auxin-in	1.0	0.676	0.610	1e-82
147773504	829	hypothetical protein VITISV_013510 [Viti	0.983	0.284	0.658	3e-82
224074159	352	mtn21-like protein [Populus trichocarpa]	1.0	0.681	0.640	2e-80
297794463	363	predicted protein [Arabidopsis lyrata su	1.0	0.661	0.615	7e-79
89257517	376	integral membrane protein, putative [Bra	1.0	0.638	0.619	8e-79
388504604	352	unknown [Lotus japonicus]	0.983	0.670	0.590	1e-78
15238103	364	Nodulin MtN21 /EamA-like transporter fam	1.0	0.659	0.611	1e-78

>gi|224138604|ref|XP_002326644.1| mtn21-like protein [Populus trichocarpa] gi|222833966|gb|EEE72443.1| mtn21-like protein [Populus trichocarpa]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 194/242 (80%), Gaps = 2/242 (0%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           MATAMPNLAPG+IFIIAWT RLE+VKLSC+YSKVKI GTLLCVVGA+ M LM ST  A++
Sbjct: 86  MATAMPNLAPGIIFIIAWTLRLERVKLSCIYSKVKIGGTLLCVVGALIMSLMSSTGTAKK 145

Query: 61  TSVNTPNI-IFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFV 119
            S N P   +FD  KIIGC+YL+AAVFVLSS VVLQA TL DFPAPMSLCAITSLIGV +
Sbjct: 146 FSSNPPTADMFDVHKIIGCLYLMAAVFVLSSNVVLQATTLVDFPAPMSLCAITSLIGVVI 205

Query: 120 TTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPI 179
           T  V+L+QNHK+DFGW  V L + + Y  LGG I GVC SFN WA+KKRGPV VS+FSPI
Sbjct: 206 TATVQLIQNHKVDFGWPVVRLGDLICYSVLGGAIGGVCVSFNGWAMKKRGPVLVSVFSPI 265

Query: 180 ATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENY-SNIGSESESDAENPL 238
           ATVISV+ S I  GD I++GSL+GMFLMF+GLY+VLWAK KE + S+   ESE D + PL
Sbjct: 266 ATVISVVFSVIAFGDRINLGSLAGMFLMFSGLYFVLWAKSKEGFPSDDHLESEFDPQKPL 325

Query: 239 LS 240
           L+
Sbjct: 326 LA 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458952|ref|XP_004147210.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus] gi|449504972|ref|XP_004162344.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 158/249 (63%), Positives = 191/249 (76%), Gaps = 10/249 (4%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           +ATAMPNLAPGLIF IAW FRLEKV+LSC+YSK+KILGTLLCV+GA TM +MHS AP+  
Sbjct: 104 LATAMPNLAPGLIFAIAWIFRLEKVQLSCIYSKIKILGTLLCVIGAFTMSIMHS-APSDV 162

Query: 61  TSVNT-------PNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITS 113
              N+          +FD +KI+GC YL  A+ +LS  VVLQAATLGDFPAPMSLCAITS
Sbjct: 163 AGKNSIPQQSPLSEQLFDEQKILGCAYLFVAIIILSCIVVLQAATLGDFPAPMSLCAITS 222

Query: 114 LIGVFVTTVVELLQNHKLDFGWEF-VGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVF 172
           LIGV +T  V+++Q H++D  W   +G+ E  +Y+ LGG I+G C SFN WA+KKRGPV 
Sbjct: 223 LIGVLLTIGVQIIQYHRIDIAWPLLIGVKELAAYVILGGTISGACVSFNGWAMKKRGPVL 282

Query: 173 VSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGS-ESE 231
           VSMFSPI TV S++LS ITLG+SI+IGSL+GMF+MF GLY+VLWAKGKE Y N    ESE
Sbjct: 283 VSMFSPIGTVCSLVLSVITLGESINIGSLAGMFMMFTGLYFVLWAKGKERYVNRNHLESE 342

Query: 232 SDAENPLLS 240
            D + PLLS
Sbjct: 343 FDVDKPLLS 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514322|ref|XP_003525855.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  315 bits (808), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 154/248 (62%), Positives = 190/248 (76%), Gaps = 8/248 (3%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHS--TAP- 57
           M TAMPNLAPGLIFIIAW FRLEKV LSC YS+VKI+GT LCV+GA+TM ++ S  T P 
Sbjct: 121 MGTAMPNLAPGLIFIIAWIFRLEKVDLSCTYSRVKIIGTFLCVLGALTMSILQSISTTPI 180

Query: 58  -AQETSVN---TPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITS 113
            A+E ++     PN+ FDR KIIGC+YLL A+ +LSS +VLQA TLGDFPAPMSLCAITS
Sbjct: 181 TAKEGTIQLLSPPNVTFDRHKIIGCLYLLVAILILSSNIVLQAFTLGDFPAPMSLCAITS 240

Query: 114 LIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFV 173
             G F+T  V+L+++H+   GW  VG+ + ++Y  L G +NG+C S N WA++KRGPV +
Sbjct: 241 FFGTFMTAAVQLVEDHEFKTGWPIVGVGDMIAYSLLAGAVNGICLSVNGWALEKRGPVLI 300

Query: 174 SMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGS-ESES 232
           SMFSPI TV SVI S +TLG +I+IGS +GMFLMF GLY+VLWAKGKE ++  G  ESE 
Sbjct: 301 SMFSPIGTVCSVIFSVVTLGQTINIGSFAGMFLMFTGLYFVLWAKGKEGFAKGGGLESEY 360

Query: 233 DAENPLLS 240
           DAE PLLS
Sbjct: 361 DAEKPLLS 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563330|ref|XP_003549917.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/249 (61%), Positives = 188/249 (75%), Gaps = 9/249 (3%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHS----TA 56
           M TAMPNLAPGLIFIIAW FRLEKV LSC YS+VKI+GTLLCV+GA+ M ++ S    T 
Sbjct: 107 MGTAMPNLAPGLIFIIAWIFRLEKVNLSCTYSRVKIIGTLLCVLGALAMSILQSISTKTT 166

Query: 57  PAQETSVN----TPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAIT 112
            A+E  +      PN++FDR KIIGC+YLLAA+F+LSS +VLQA TLGDFPAPMSLCAIT
Sbjct: 167 SAKEGKIQLLSPPPNVMFDRHKIIGCLYLLAAIFILSSNIVLQAFTLGDFPAPMSLCAIT 226

Query: 113 SLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVF 172
           S  G F+T  V+L+++H+   GW  V + + ++Y  L G ++G+C S N WA++KRGPV 
Sbjct: 227 SFFGTFMTAAVQLVEDHEFKPGWPIVSVGDMIAYSLLAGAVSGICLSVNGWALEKRGPVL 286

Query: 173 VSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGS-ESE 231
           VSMFSPI TV SV+ S +TLG +I+IGS +GMFLMF G Y+VLWAKG E Y+  G  ESE
Sbjct: 287 VSMFSPIGTVCSVLFSVVTLGQTINIGSFAGMFLMFTGFYFVLWAKGTEGYAKGGGLESE 346

Query: 232 SDAENPLLS 240
            DAE PLLS
Sbjct: 347 YDAEKPLLS 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773504|emb|CAN66783.1| hypothetical protein VITISV_013510 [Vitis vinifera]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/246 (65%), Positives = 188/246 (76%), Gaps = 10/246 (4%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           +ATAMPNLAPGLIFIIA +FRLEKV +SC+YS+VKI+GTLLCVVGAV M L+HST    E
Sbjct: 85  IATAMPNLAPGLIFIIACSFRLEKVNISCMYSQVKIIGTLLCVVGAVVMSLLHSTT---E 141

Query: 61  TSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVT 120
            S     IIF+ EKI+GC+YLLAAVF LSS VVLQA TL DFPAP+SLCAITS+IGVF+T
Sbjct: 142 KSSKLSEIIFNEEKIVGCLYLLAAVFTLSSNVVLQATTLVDFPAPISLCAITSIIGVFLT 201

Query: 121 TVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIA 180
            +VE LQNHK D GW  + L + + Y  LGG ++G+C SFN WA+KKRGPV VSMFSPI 
Sbjct: 202 MIVEFLQNHKFDTGWPNLSLRDIVFYSLLGGSVSGLCVSFNGWAMKKRGPVLVSMFSPIG 261

Query: 181 TVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYS-------NIGSESESD 233
           TV SVILS +TLG+SI IGSL GM LMF GLY+VLWAKGKE +            E E+D
Sbjct: 262 TVCSVILSVMTLGESISIGSLCGMCLMFTGLYFVLWAKGKEGFQVGETLEPEPEPELEND 321

Query: 234 AENPLL 239
            E PLL
Sbjct: 322 VEKPLL 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074159|ref|XP_002304279.1| mtn21-like protein [Populus trichocarpa] gi|222841711|gb|EEE79258.1| mtn21-like protein [Populus trichocarpa]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/245 (64%), Positives = 191/245 (77%), Gaps = 5/245 (2%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           MATAMPNLAPGLIFIIAWT RLEKVKL C+YSKVKI+GT+LCVVGA+ M LM ST  A+E
Sbjct: 108 MATAMPNLAPGLIFIIAWTLRLEKVKLCCVYSKVKIVGTILCVVGALMMSLMSSTESAKE 167

Query: 61  TSVN--TP--NIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIG 116
           +  +  TP  ++ FD+ KI GC+YL+AAVFVLSS VVLQA TLGDFPAP+SLCAITSLIG
Sbjct: 168 SKSSESTPPGDMSFDKHKINGCLYLIAAVFVLSSNVVLQATTLGDFPAPISLCAITSLIG 227

Query: 117 VFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMF 176
           V +T +VEL+ NH++D GW  + L   + Y  LGG + G C SFN WA+KKRGPV V++F
Sbjct: 228 VIITAIVELVLNHRVDVGWPLMRLGTLICYSILGGAVGGACVSFNGWAMKKRGPVHVAVF 287

Query: 177 SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGS-ESESDAE 235
           +PI TVISV+ S ITLGD  ++ SL+GMFLMF GLY+VLWAKGKE + +    ESE D +
Sbjct: 288 NPIGTVISVVFSVITLGDRFNLASLAGMFLMFTGLYFVLWAKGKEGFRDGDHLESEFDPQ 347

Query: 236 NPLLS 240
             LL+
Sbjct: 348 KRLLA 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794463|ref|XP_002865116.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310951|gb|EFH41375.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 149/242 (61%), Positives = 184/242 (76%), Gaps = 2/242 (0%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           MATAMPNLAPGLIF +AW   LEK+ L C+YSK+KILGTLLCV GA+TM +MHST+ + +
Sbjct: 122 MATAMPNLAPGLIFFLAWIVGLEKMNLKCVYSKLKILGTLLCVFGALTMSIMHSTSISHK 181

Query: 61  TSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVT 120
              +TP  +FDR+K++GC+YLL AVFVLS+ VVLQA+TL +FPAP+SL AIT+L+G+ +T
Sbjct: 182 EEDDTPVFVFDRDKVVGCIYLLGAVFVLSTNVVLQASTLAEFPAPISLSAITALLGMLIT 241

Query: 121 TVVELLQNHKLD-FGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPI 179
           TVV LLQN K       FV     + Y  L G ++G C SFN WA+KKRGPV VSMFSP 
Sbjct: 242 TVVLLLQNRKAKVLSSSFVSFGNLVGYSLLAGTVSGACVSFNGWAMKKRGPVLVSMFSPF 301

Query: 180 ATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGS-ESESDAENPL 238
           ATVISV  S +TLG+S+ +GS+ GM LMF GLY VLWAKGKE +S I S ESE D++ PL
Sbjct: 302 ATVISVAFSVLTLGESVSLGSVGGMVLMFVGLYLVLWAKGKEGFSEIESFESEFDSKKPL 361

Query: 239 LS 240
           LS
Sbjct: 362 LS 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257517|gb|ABD65007.1| integral membrane protein, putative [Brassica oleracea]

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 150/242 (61%), Positives = 184/242 (76%), Gaps = 2/242 (0%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           MATAMPNLAPGLIF IAW  RLEK+ + C+YSK+KILGTLLCV GA+TM LMHS +  Q+
Sbjct: 135 MATAMPNLAPGLIFFIAWMVRLEKMDMKCVYSKLKILGTLLCVFGALTMSLMHSASIIQD 194

Query: 61  TSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVT 120
              N    +FDR++++GC+YLL AVF+LSS VVLQA+TL +FPAP+SL AITSLIGV +T
Sbjct: 195 EKDNASIFVFDRDRVVGCMYLLGAVFILSSNVVLQASTLAEFPAPISLSAITSLIGVVIT 254

Query: 121 TVVELLQNHKLD-FGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPI 179
           T+++LLQN          + +   + +  LGGM++G C SFN WA+KKRGPV VSMFSPI
Sbjct: 255 TMLQLLQNPNTKVVTRSLISISNLVGFSLLGGMVSGACVSFNGWAMKKRGPVMVSMFSPI 314

Query: 180 ATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGS-ESESDAENPL 238
           ATVISV LS +TLG+ + IGS+ GM LMF GLY VLWAKGKE +S I S ESE D + PL
Sbjct: 315 ATVISVGLSVVTLGEPVRIGSVGGMALMFIGLYLVLWAKGKEGFSQIDSFESEYDPKKPL 374

Query: 239 LS 240
           LS
Sbjct: 375 LS 376

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504604|gb|AFK40368.1| unknown [Lotus japonicus]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 147/249 (59%), Positives = 183/249 (73%), Gaps = 13/249 (5%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHS---TAP 57
           M TAMPNLAPGLIFIIAW FR+EKV L C YS+VKI+GTLLCVVGAV M +M S   + P
Sbjct: 108 MGTAMPNLAPGLIFIIAWIFRMEKVDLRCTYSRVKIIGTLLCVVGAVAMSMMQSLSTSVP 167

Query: 58  AQETSVNT------PNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAI 111
            +E +V        P + FDR+KI GC+YLL A+ +LSS++VLQA TLGDFPAPMSLC I
Sbjct: 168 IKEGTVTVQLASPPPVLTFDRDKIFGCIYLLVAIIILSSSIVLQAFTLGDFPAPMSLCVI 227

Query: 112 TSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPV 171
           TS +   +  V +L+++H+   GW  V + + + Y  L G ++G+C SFN WA++KRGPV
Sbjct: 228 TSFLAGSLAAVAQLVEDHQFSTGWPIVSVGDMVGYGFLSGAVSGICLSFNGWALEKRGPV 287

Query: 172 FVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESE 231
            VSMFSPI TV SV+ SA T+GD+I+IGS +GM LMF GLY+VLWAKGKE Y    S+SE
Sbjct: 288 LVSMFSPIGTVCSVVFSAFTIGDTINIGSFAGMVLMFTGLYFVLWAKGKEGY----SDSE 343

Query: 232 SDAENPLLS 240
            DAE PLLS
Sbjct: 344 FDAEKPLLS 352

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238103|ref|NP_199558.1| Nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana] gi|9758775|dbj|BAB09073.1| nodulin-like protein [Arabidopsis thaliana] gi|332008140|gb|AED95523.1| Nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/242 (61%), Positives = 183/242 (75%), Gaps = 2/242 (0%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           MATAMPNLAPGLIF IAW   LEK+ L C+YSK+KILGTLLCV GA+ M +MHST+ + +
Sbjct: 123 MATAMPNLAPGLIFFIAWIVGLEKMNLKCVYSKLKILGTLLCVFGALAMSVMHSTSISHK 182

Query: 61  TSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVT 120
              +TP  +FDR+K++GC+YLL AVFVLS+ VVLQA+TL +FPAP+SL AIT+L+GV +T
Sbjct: 183 EEDDTPIFVFDRDKVVGCIYLLGAVFVLSTNVVLQASTLAEFPAPISLSAITALLGVLIT 242

Query: 121 TVVELLQNHKLD-FGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPI 179
           TVV LLQN K        +     + Y  L G ++G C SFN WA+KKRGPVFVSMFSP 
Sbjct: 243 TVVLLLQNRKTKVLASSLISFGNLVGYSVLAGAVSGACVSFNGWAMKKRGPVFVSMFSPF 302

Query: 180 ATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGS-ESESDAENPL 238
           ATVISV  + +TLG+S+ +GS+ GM LMF GLY VLWAKGKE +S I S ESE D++ PL
Sbjct: 303 ATVISVAFAVLTLGESVSLGSVGGMVLMFVGLYLVLWAKGKEGFSEIESFESEFDSKKPL 362

Query: 239 LS 240
           LS
Sbjct: 363 LS 364

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2168978	364	UMAMIT7 "Usually multiple acid	1.0	0.659	0.611	1.7e-75
TAIR|locus:2130908	359	UMAMIT8 "AT4G16620" [Arabidops	0.987	0.660	0.510	1.5e-60
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.979	0.661	0.315	1.5e-26
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.979	0.618	0.322	1.9e-26
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.912	0.534	0.317	2.5e-26
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.966	0.620	0.322	3.2e-26
TAIR|locus:2173189	377	UMAMIT15 "Usually multiple aci	0.908	0.578	0.302	5.2e-26
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.95	0.672	0.302	2.2e-25
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.966	0.605	0.3	5.9e-25
TAIR|locus:2118686	373	UMAMIT34 "AT4G30420" [Arabidop	0.925	0.595	0.321	2.6e-24

TAIR|locus:2168978 UMAMIT7 "Usually multiple acids move in and out Transporters 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 148/242 (61%), Positives = 183/242 (75%)

Query:     1 MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
             MATAMPNLAPGLIF IAW   LEK+ L C+YSK+KILGTLLCV GA+ M +MHST+ + +
Sbjct:   123 MATAMPNLAPGLIFFIAWIVGLEKMNLKCVYSKLKILGTLLCVFGALAMSVMHSTSISHK 182

Query:    61 TSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVT 120
                +TP  +FDR+K++GC+YLL AVFVLS+ VVLQA+TL +FPAP+SL AIT+L+GV +T
Sbjct:   183 EEDDTPIFVFDRDKVVGCIYLLGAVFVLSTNVVLQASTLAEFPAPISLSAITALLGVLIT 242

Query:   121 TVVELLQNHKLD-FGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPI 179
             TVV LLQN K        +     + Y  L G ++G C SFN WA+KKRGPVFVSMFSP 
Sbjct:   243 TVVLLLQNRKTKVLASSLISFGNLVGYSVLAGAVSGACVSFNGWAMKKRGPVFVSMFSPF 302

Query:   180 ATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGS-ESESDAENPL 238
             ATVISV  + +TLG+S+ +GS+ GM LMF GLY VLWAKGKE +S I S ESE D++ PL
Sbjct:   303 ATVISVAFAVLTLGESVSLGSVGGMVLMFVGLYLVLWAKGKEGFSEIESFESEFDSKKPL 362

Query:   239 LS 240
             LS
Sbjct:   363 LS 364

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2130908 UMAMIT8 "AT4G16620" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 125/245 (51%), Positives = 174/245 (71%)

Query:     1 MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
             MATAMPNL P  IF+IAW   +EKVKLSC+YS+VK+ GT+LCV+GA+ M LMHST  A  
Sbjct:   105 MATAMPNLCPAFIFVIAWAAGMEKVKLSCMYSRVKMGGTVLCVMGALIMSLMHSTT-ATL 163

Query:    61 TSVNT----PN-IIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLI 115
             +SV T    P+ ++ D++KI+GC+YLL A+  LSS++VLQA+ L +FPAP+S+ ++ SL+
Sbjct:   164 SSVKTIPIVPDEVVVDKDKILGCLYLLLAICGLSSSIVLQASILAEFPAPISMFSMVSLM 223

Query:   116 GVFVTTVVELLQNHKLDFGW-EFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVS 174
             G   T  ++      ++ G    +GL   + Y  LGG+++G   SFNAW IK++GPV VS
Sbjct:   224 GGITTVALQYALKGSMEMGSASVIGLGHLVGYAILGGLVSGGGLSFNAWVIKRKGPVIVS 283

Query:   175 MFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDA 234
             +FSPIATV+ V++SA T+ +S ++GS +GM LMF GLY+VLWAKGKE+   I  E + D 
Sbjct:   284 LFSPIATVVCVVVSAFTMEESFNLGSFAGMALMFGGLYFVLWAKGKEDCEEI-DEMKQDD 342

Query:   235 ENPLL 239
             E  LL
Sbjct:   343 EESLL 347

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 78/247 (31%), Positives = 131/247 (53%)

Query:     1 MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMH------- 53
             +A+A+ N+ P + FI+A  FR+EK       S  K++GT++ +VGA+ + L H       
Sbjct:   105 LASAISNINPAITFILAIIFRMEKASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTP 164

Query:    54 STAP-AQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAIT 112
             S+ P  Q   +  P    + + IIG   L     ++    +LQA  +  +PAP ++    
Sbjct:   165 SSPPFPQLRQLLLPLSSSNSDWIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFY 224

Query:   113 SLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVF 172
              LI   +T+++ ++        W  +    T+  I +GG+ N    + + WA++ +GPV+
Sbjct:   225 FLIASILTSLIGIVAEKNNPSIW-IIHFDITLVCIVVGGIFNPGYYAIHLWAVRNKGPVY 283

Query:   173 VSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESES 232
             +++F P++ +I+VI+ AI LGDS  +GSL G  L+  G Y V+W K KE  +   S SE 
Sbjct:   284 LAIFRPLSILIAVIMGAIFLGDSFYLGSLVGGILISLGFYTVMWGKAKEGKTQFLSLSE- 342

Query:   233 DAENPLL 239
               E PLL
Sbjct:   343 --ETPLL 347

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 79/245 (32%), Positives = 123/245 (50%)

Query:     2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQET 61
             ATAM N+ P + F++A+ F LE+VKL C+ S  K++GTL  V GA+ M L+    P  + 
Sbjct:   108 ATAMYNVLPAITFVLAYIFGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVKG--PVLDL 165

Query:    62 ----SVNTPNII-FDREKII-GCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLI 115
                  V+  N    D    I G V +    F  +  ++LQA TL  +PA +SL A   L+
Sbjct:   166 FWTKGVSAHNTAGTDIHSAIKGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLM 225

Query:   116 GVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMI-NGVCQSFNAWAIKKRGPVFVS 174
             G    T V L+        W  +G    +      G++ + +        +K RGPVFV+
Sbjct:   226 GTIEGTAVALVMEKGNPSAWA-IGWDTKLLTATYSGIVCSALAYYVGGVVMKTRGPVFVT 284

Query:   175 MFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDA 234
              FSP+  +I  I+S I   + + +G + G  ++ AGLY V+W KGK+   N   + + ++
Sbjct:   285 AFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKDYKYNSTLQLDDES 344

Query:   235 ENPLL 239
               P L
Sbjct:   345 AQPKL 349

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 74/233 (31%), Positives = 119/233 (51%)

Query:     2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGA--VTM--G--LMHST 55
             A+A+ N  P + FI+A   RLEKV +S      KI+GT+ CV GA  +T+  G  + H  
Sbjct:   112 ASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIW 171

Query:    56 APAQETSVN-----TPNIIFDREK--IIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSL 108
              P  E + +       N +  + +   +GC+YLL      S  +VLQA  L  +PA +S+
Sbjct:   172 RPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSV 231

Query:   109 CAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKR 168
              + T   GV    ++       L+  W+     E  + +  G + +G+  S   W I + 
Sbjct:   232 TSFTCFFGVIQFLIIAAFFETDLEH-WKIHSGGELFTILYAGFVASGIAFSVQIWCIDRG 290

Query:   169 GPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE 221
             GPVFV+++ P+ T+   I+++I LG+   +G + G  L+  GLY VLW K +E
Sbjct:   291 GPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEE 343

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 78/242 (32%), Positives = 122/242 (50%)

Query:     4 AMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHST------AP 57
             AM N+ P   FI+AW FRLEKV +  ++S+ KILGT++ V GA+ M ++         A 
Sbjct:   103 AMTNVLPAFAFIMAWIFRLEKVNVKKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWAN 162

Query:    58 AQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGV 117
               +   ++ N    ++   G   +       +  + LQA TL  +P  +SL A    +G 
Sbjct:   163 PHDIHQDSSNTGVKQDLTKGASLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGS 222

Query:   118 FVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMI-NGVCQSFNAWAIKKRGPVFVSMF 176
               +T+V L         W  + L   +     GG+I +G+        +K RGPVFV+ F
Sbjct:   223 IESTIVALFIERGNPSAWA-IHLDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAF 281

Query:   177 SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAEN 236
             +P++ VI  IL +I L + + +G + G  ++  GLY VLW K K+  S+  S S+ D E 
Sbjct:   282 NPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSKDEPSS--SFSDMDKEL 339

Query:   237 PL 238
             PL
Sbjct:   340 PL 341

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173189 UMAMIT15 "Usually multiple acids move in and out Transporters 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 69/228 (30%), Positives = 125/228 (54%)

Query:     3 TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHS-------T 55
             +A+ N  P + FI+A  F+LEKV +   +S+ K++GT++ + GA+ M  +         T
Sbjct:   102 SALCNALPAMTFIMACVFKLEKVTIERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWT 161

Query:    56 APAQETSVNTPNIIFDREKII--GCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITS 113
             + ++  + +T  +   ++  I  G + L+A+ F  S  ++LQA  L  + A +SL A+  
Sbjct:   162 SNSRGLNGHTHAMRIPKQADIARGSIMLVASCFSWSCYIILQAKILAQYKAELSLTALMC 221

Query:   114 LIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFV 173
             ++G+   TV+ L+   K    W+ +    T+     GG+++G+      WA K+RGPVFV
Sbjct:   222 IMGMLEATVMGLIWERKNMSVWK-INPDVTLLASIYGGLVSGLAYYVIGWASKERGPVFV 280

Query:   174 SMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE 221
             S F+P++ V+  ILS     + + +G + G  ++  G+Y VLW K K+
Sbjct:   281 SAFNPLSMVLVAILSTFVFLEKVYVGRVIGSVVIVIGIYLVLWGKSKD 328

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 73/241 (30%), Positives = 127/241 (52%)

Query:     1 MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
             +++AM N+ P   FI+A  FR+E + L    S  K+LGT+L ++GA+ + L H   P   
Sbjct:   105 LSSAMSNVNPAFTFILAVVFRMENISLGKKSSVAKVLGTILSIIGALVVTLYHG--PMLM 162

Query:    61 TSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVT 120
             +S +        + IIG   L     ++S + ++ A T+G +P+ + +  + ++    V 
Sbjct:   163 SSHS--------DWIIGGGLLALQYILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVC 214

Query:   121 TVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIA 180
               V LL        W  +    T+  +   G++N      + WA+  +GPV++SMF P++
Sbjct:   215 AFVSLLAEKDNPKAW-VIRFDITLITVVATGILNSGYYVIHTWAVSHKGPVYLSMFKPLS 273

Query:   181 TVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNI-GSESESDAEN-PL 238
              +I+ + + I LG+S+ +GS+ G  L+  G Y VLW K KE+  +I G+   S + N PL
Sbjct:   274 ILIAAVSTFIFLGESLYLGSVMGGILISIGFYMVLWGKAKEDKVDIIGAIESSPSHNAPL 333

Query:   239 L 239
             L
Sbjct:   334 L 334

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 72/240 (30%), Positives = 117/240 (48%)

Query:     2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQET 61
             A+AM N  P + FI+A   RLE + L   +   K+LGTL+ + GA  + L     P  + 
Sbjct:   128 ASAMQNSVPAITFIMACALRLEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGF-PIFDQ 186

Query:    62 SVNTPN--II-FDREK--IIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIG 116
              +N     ++  D      +G +YL+      +  +VLQA  L  +PA ++L + T   G
Sbjct:   187 GLNMQKEEVVGSDNSHSLTLGWLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFG 246

Query:   117 VFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMF 176
             +    V+ L     L+  W  V   E  + +  G + +G+      W I K GPVFV++F
Sbjct:   247 LIQFLVIALFVETDLN-NWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVF 305

Query:   177 SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAEN 236
              P+ T++   ++ + LGD +  G + G   +  GLY VLW K +E    +  ES+ D E+
Sbjct:   306 QPLQTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERKLAL-EESQQDPES 364

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2118686 UMAMIT34 "AT4G30420" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 75/233 (32%), Positives = 114/233 (48%)

Query:     1 MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQ- 59
             M +A+ N+ P + F+I++    EK+ L  +    KI GT+LCV GA++M L+        
Sbjct:    94 MGSAVGNIIPAITFLISFLAGYEKLNLRDIRGLAKIAGTILCVAGAISMTLLRGPKILNS 153

Query:    60 ETSVNTPNIIFDREK-----IIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSL 114
             E+++     +    K     +IGC++L ++    S  ++LQ      +P  +SL A   L
Sbjct:   154 ESALPIAKSVLGHLKDQNTWLIGCLFLFSSTLCWSFWLILQVPISAYYPDNLSLSAWMCL 213

Query:   115 IGVFVTTVVELLQNHKLDFGWEFVGLPE--TMSYIALGGMINGVCQSFNAWAIKKRGPVF 172
              G     VV      K    W      E  T  Y  +G   + +  +  AWAI KRGPVF
Sbjct:   214 FGTIQCAVVTFFLE-KDPNAWILHSYSEFATCLYAGIGA--SALSFTVQAWAIAKRGPVF 270

Query:   173 VSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSN 225
              ++F+P+ TVI  IL+A+   + I  GSL G   +  GLY VLW K K+   N
Sbjct:   271 SALFNPLCTVIVTILAALFFHEEIYTGSLIGGLGVILGLYTVLWGKAKDVMMN 323

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FGL0	WTR44_ARATH	No assigned EC number	0.6115	1.0	0.6593	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: N21L5 mtn21-like protein (327 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-23

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 95.8 bits (238), Expect = 3e-23
 Identities = 67/250 (26%), Positives = 127/250 (50%), Gaps = 13/250 (5%)

Query: 1   MATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQE 60
           +A+A+ N+ P L FI+A  FR+EKV      S  K++GT+L ++GA+ +   H   P   
Sbjct: 106 LASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH--GPRVF 163

Query: 61  TSVNTPNIIF----------DREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCA 110
            + + P + F          + + +IG   L      +S + +LQA  + ++PA  ++  
Sbjct: 164 VASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSF 223

Query: 111 ITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGP 170
           + ++    VT+++ L+        W  +    T+  I    +I  V    ++W ++ +GP
Sbjct: 224 LYTVCVSIVTSMIGLVVEKNNPSVW-IIHFDITLITIVTMAIITSVYYVIHSWTVRHKGP 282

Query: 171 VFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSES 230
           +++++F P++ +I+V++ AI L DS+ +G L G  L+  G Y V+W K  E    + S S
Sbjct: 283 LYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFS 342

Query: 231 ESDAENPLLS 240
             +    LL+
Sbjct: 343 GKEKTPLLLN 352

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.95
PRK11689	295	aromatic amino acid exporter; Provisional	99.94
PRK11272	292	putative DMT superfamily transporter inner membran	99.93
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.92
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.91
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.91
PRK15430	296	putative chloramphenical resistance permease RarD;	99.9
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.89
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.87
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.84
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.8
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.71
KOG2765	416	consensus Predicted membrane protein [Function unk	99.66
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.59
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.58
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.57
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.56
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.56
COG2510	140	Predicted membrane protein [Function unknown]	99.5
COG2962	293	RarD Predicted permeases [General function predict	99.45
KOG2766	336	consensus Predicted membrane protein [Function unk	99.35
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.2
PRK15430	296	putative chloramphenical resistance permease RarD;	99.19
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.12
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.06
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.01
KOG1580	337	consensus UDP-galactose transporter related protei	99.0
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.95
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.88
PLN00411	358	nodulin MtN21 family protein; Provisional	98.78
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.76
PRK11272	292	putative DMT superfamily transporter inner membran	98.7
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.67
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.63
PRK11689	295	aromatic amino acid exporter; Provisional	98.61
KOG1581	327	consensus UDP-galactose transporter related protei	98.6
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.56
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.54
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.52
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.5
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.46
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.44
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.43
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.4
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.35
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.32
COG2962	293	RarD Predicted permeases [General function predict	98.26
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.22
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.21
KOG1582	367	consensus UDP-galactose transporter related protei	98.2
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.16
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.14
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.04
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	97.95
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.91
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.9
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.88
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.87
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.87
PRK13499	345	rhamnose-proton symporter; Provisional	97.66
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.66
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.49
COG2076	106	EmrE Membrane transporters of cations and cationic	97.47
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.46
PRK11431	105	multidrug efflux system protein; Provisional	97.4
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.39
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.37
PRK13499	345	rhamnose-proton symporter; Provisional	97.24
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.2
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.17
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.11
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.05
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.8
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	96.58
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.29
KOG2765	416	consensus Predicted membrane protein [Function unk	95.92
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.8
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.38
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	94.79
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	94.32
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	94.16
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	93.57
KOG1580	337	consensus UDP-galactose transporter related protei	92.35
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	91.55
KOG1443	349	consensus Predicted integral membrane protein [Fun	89.41
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	88.91
KOG2922	335	consensus Uncharacterized conserved protein [Funct	88.61
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	87.94
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	87.43
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	87.35
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	87.24
COG4657	193	RnfA Predicted NADH:ubiquinone oxidoreductase, sub	86.38
COG2076	106	EmrE Membrane transporters of cations and cationic	86.31
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	85.48
PRK02237	109	hypothetical protein; Provisional	85.41
PRK09541	110	emrE multidrug efflux protein; Reviewed	85.38
PRK11431	105	multidrug efflux system protein; Provisional	85.2
PRK10650	109	multidrug efflux system protein MdtI; Provisional	85.2
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	82.68

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=2e-35  Score=263.03  Aligned_cols=234  Identities=27%  Similarity=0.494  Sum_probs=186.5

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCC-c------CCC-CccccCCc
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQET-S------VNT-PNIIFDRE   73 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~-~------~~~-~~~~~~~~   73 (240)
                      |+++.+++|+|+++++++++.|+++.|+|.++.|++|+++|+.|+.++..++++.....+ +      ++. .......+
T Consensus       107 asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (358)
T PLN00411        107 ASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSD  186 (358)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCccc
Confidence            688999999999999999987888888888888999999999999988765443211000 0      000 00111223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCC-CcccccccCchhHHHHHHHHHH
Q 026311           74 KIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHK-LDFGWEFVGLPETMSYIALGGM  152 (240)
Q Consensus        74 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~gi  152 (240)
                      +..|++++++|+++||+|++++||..+++|+....+++++.++++.+.+.++..++. .. .|...++.....+ +|.++
T Consensus       187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~i-~y~~i  264 (358)
T PLN00411        187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS-VWIIHFDITLITI-VTMAI  264 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcc-cceeccchHHHHH-HHHHH
Confidence            467999999999999999999999988887667888899999988888877776542 22 3433333344555 78888


Q ss_pred             HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccCCCCCc
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESES  232 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~  232 (240)
                      ++.++|.+|+|++|+.||++++++.+++|++++++|++++||++++.+++|+++|+.|+++++++++||.|+++++||.+
T Consensus       265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~~~~  344 (358)
T PLN00411        265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFSGK  344 (358)
T ss_pred             HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccc
Confidence            55689999999999999999999999999999999999999999999999999999999999999999988888887744


Q ss_pred             ccCCCC
Q 026311          233 DAENPL  238 (240)
Q Consensus       233 ~~~~~~  238 (240)
                      +. -|+
T Consensus       345 ~~-~~~  349 (358)
T PLN00411        345 EK-TPL  349 (358)
T ss_pred             cc-chh
Confidence            33 454

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=206.92  Aligned_cols=199  Identities=16%  Similarity=0.162  Sum_probs=155.7

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (240)
                      |+++.+++|+++.+++++++|||++.|      +++|++++++|+.++.. ++.             +..+....|+++.
T Consensus        89 a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~-------------~~~~~~~~G~~l~  148 (299)
T PRK11453         89 ASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL-------------NGQHVAMLGFMLT  148 (299)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC-------------CCcchhHHHHHHH
Confidence            456788999999999999999998866      68999999999988752 110             0112234799999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCc--hhHHHHHHHHHHHHHHHHHHHhhcCCCc--ccccccCchhHHHHHHHHHH-HHHH
Q 026311           82 LAAVFVLSSTVVLQAATLGDFPA--PMSLCAITSLIGVFVTTVVELLQNHKLD--FGWEFVGLPETMSYIALGGM-INGV  156 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~~~~~--~~~~~~~~~l~g~l~l~~~~~~~~~~~~--~~~~~~~~~~~~~i~l~~gi-~t~i  156 (240)
                      ++++++|++|++++||..++.++  ....+.+++..+.+.....+...+++..  ..+.......+..+ +|+++ +|++
T Consensus       149 l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~i~~t~~  227 (299)
T PRK11453        149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSL-MYLAFVATIV  227 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHH-HHHHHHHHHH
Confidence            99999999999999998765432  3455667777776665555544443211  01211112345665 89999 9999


Q ss_pred             HHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311          157 CQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE  221 (240)
Q Consensus       157 a~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~  221 (240)
                      +|.+|++++|+.++++++.+.+++|++++++|++++||++++.+++|+++|++|+++..++++.+
T Consensus       228 ~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~~~  292 (299)
T PRK11453        228 GYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLRWR  292 (299)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999988876533

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.94  E-value=2.5e-26  Score=200.21  Aligned_cols=198  Identities=15%  Similarity=0.116  Sum_probs=145.5

Q ss_pred             cccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHH
Q 026311            3 TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLL   82 (240)
Q Consensus         3 ~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (240)
                      +++.+++|+++.+++++++|||++++      |++|++++++|++++... +...+.  ++   ...+..+...|+++.+
T Consensus        95 ~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~--~~---~~~~~~~~~~G~~~~l  162 (295)
T PRK11689         95 GMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL--AE---LINNIASNPLSYGLAF  162 (295)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh--hh---hhhccccChHHHHHHH
Confidence            46778999999999999999998865      689999999999887632 111000  00   0001012246999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 026311           83 AAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNA  162 (240)
Q Consensus        83 ~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~  162 (240)
                      +|++|||+|+++.||..+++ ++...  .+ ..+++.+.+.....+.... .++  + ..+..+ +|.+++++++|.+|+
T Consensus       163 ~aa~~~A~~~v~~k~~~~~~-~~~~~--~~-~~~~~~l~~~~~~~~~~~~-~~~--~-~~~~~l-~~~~~~t~~~~~l~~  233 (295)
T PRK11689        163 IGAFIWAAYCNVTRKYARGK-NGITL--FF-ILTALALWIKYFLSPQPAM-VFS--L-PAIIKL-LLAAAAMGFGYAAWN  233 (295)
T ss_pred             HHHHHHHHHHHHHhhccCCC-CchhH--HH-HHHHHHHHHHHHHhcCccc-cCC--H-HHHHHH-HHHHHHHHHHHHHHH
Confidence            99999999999999987765 45543  22 3333444443333222111 221  1 234454 676668899999999


Q ss_pred             HHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311          163 WAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE  221 (240)
Q Consensus       163 ~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~  221 (240)
                      +++|+.|+++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..+.++++
T Consensus       234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~  292 (295)
T PRK11689        234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRK  292 (295)
T ss_pred             HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHh
Confidence            99999999999999999999999999999999999999999999999998887655433

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.93  E-value=2.4e-25  Score=193.77  Aligned_cols=190  Identities=14%  Similarity=0.110  Sum_probs=154.4

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (240)
                      |+++.++.|+++.+++++ +|||++++      +++|++++++|+.++... + .             . +....|+++.
T Consensus        99 a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~-~-------------~-~~~~~G~l~~  155 (292)
T PRK11272         99 AAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-G-N-------------L-SGNPWGAILI  155 (292)
T ss_pred             HHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-c-c-------------c-ccchHHHHHH
Confidence            567889999999999986 58998865      689999999999877421 1 0             1 1234799999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHHH
Q 026311           82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQSF  160 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~l  160 (240)
                      ++++++||.|++..||..++  ++...+.+++..+++.+.+.....+.+.. ..  .....+..+ +|+++ +|+++|.+
T Consensus       156 l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i-~~l~i~~s~~~~~l  229 (292)
T PRK11272        156 LIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLT-AL--PTLSGFLAL-GYLAVFGSIIAISA  229 (292)
T ss_pred             HHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccc-cc--CCHHHHHHH-HHHHHHHHHHHHHH
Confidence            99999999999999987543  34667889999999888887765443211 11  111234555 79999 99999999


Q ss_pred             HHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccc
Q 026311          161 NAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGK  220 (240)
Q Consensus       161 ~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~  220 (240)
                      |++++|+.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++.+++++|
T Consensus       230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999998775553

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.92  E-value=1e-24  Score=190.49  Aligned_cols=199  Identities=13%  Similarity=0.147  Sum_probs=151.1

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (240)
                      ++++.+++|+++.+++++++|||++++      +++|+++++.|+.+.. . + +             . +....|+++.
T Consensus        94 ~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~-~-~-~-------------~-~~~~~G~~~~  150 (302)
T TIGR00817        94 THTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS-D-T-E-------------L-SFNWAGFLSA  150 (302)
T ss_pred             HHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc-C-C-c-------------c-cccHHHHHHH
Confidence            456788999999999999999998865      6799999999997643 1 1 0             1 1234699999


Q ss_pred             HHHHHHHHHHHHHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHhhcCCCc--ccccc---cCch-hHHHHHHHHHH-
Q 026311           82 LAAVFVLSSTVVLQAATLG--DFPAPMSLCAITSLIGVFVTTVVELLQNHKLD--FGWEF---VGLP-ETMSYIALGGM-  152 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~--~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~--~~~~~---~~~~-~~~~i~l~~gi-  152 (240)
                      ++|+++|++|+++.||..+  ++ |+...+.+++..+++.++|++...|....  .++..   ..+. ..+...++.+. 
T Consensus       151 l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (302)
T TIGR00817       151 MISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMG  229 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHH
Confidence            9999999999999999877  56 58999999999999999999876653211  01110   0010 11111122222 


Q ss_pred             HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccc
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYS  224 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~  224 (240)
                      +....+.++++++++.||++++++.+++|++++++|++++||++++.+++|+++++.|+++.++.|.||+|+
T Consensus       230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~  301 (302)
T TIGR00817       230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP  301 (302)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            222222455589999999999999999999999999999999999999999999999999998766655554

specificities overlap.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.91  E-value=1.1e-23  Score=179.59  Aligned_cols=182  Identities=14%  Similarity=0.137  Sum_probs=150.4

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (240)
                      ++++.++.|+++++++++++|||+++|      +++|++++++|++++.. ++.               .+....|+++.
T Consensus        76 ~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~~---------------~~~~~~G~~~~  133 (260)
T TIGR00950        76 AALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DGN---------------LSINPAGLLLG  133 (260)
T ss_pred             hHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CCc---------------ccccHHHHHHH
Confidence            567888999999999999999998876      67999999999988752 211               12235799999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHH
Q 026311           82 LAAVFVLSSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQS  159 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~  159 (240)
                      ++++++|+.+.++.|+..++++ ++...+.+++..+++.+.+.....++...  +   ....+..+ ++.++ ++.++|.
T Consensus       134 l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~---~~~~~~~~-~~~~~~~~~~~~~  207 (260)
T TIGR00950       134 LGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQ--A---LSLQWGAL-LYLGLIGTALAYF  207 (260)
T ss_pred             HHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC--c---chHHHHHH-HHHHHHHHHHHHH
Confidence            9999999999999999877653 23456667889998888888765443221  2   11234444 78899 9999999


Q ss_pred             HHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHH
Q 026311          160 FNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGL  211 (240)
Q Consensus       160 l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv  211 (240)
                      +|++++|+.++++++.+.+++|+++++++++++||++++.+++|+++++.|+
T Consensus       208 ~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       208 LWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999986

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.91  E-value=9.9e-24  Score=183.69  Aligned_cols=191  Identities=13%  Similarity=0.115  Sum_probs=146.0

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (240)
                      |+++.+++|+++.+++.    ||..        +..++.+++.|+.++.. .+.+             .+.....|+++.
T Consensus       100 a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~~-~~~~-------------~~~~~~~G~ll~  153 (293)
T PRK10532        100 AVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLLP-LGQD-------------VSHVDLTGAALA  153 (293)
T ss_pred             HHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheeee-cCCC-------------cccCChHHHHHH
Confidence            45677889999987762    3321        34678889999987752 1211             111235799999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHHH
Q 026311           82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQSF  160 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~l  160 (240)
                      ++++++||+|+++.||..++++ +... .++.+++++.+.+.....+.. . .++.   ..+... +|+|+ +|+++|.+
T Consensus       154 l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~-~-~~~~---~~~~~~-l~lgv~~t~~~~~l  225 (293)
T PRK10532        154 LGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGE-A-LWHW---SILPLG-LAVAILSTALPYSL  225 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCc-c-cCCH---HHHHHH-HHHHHHHHHHHHHH
Confidence            9999999999999999877764 5555 567777887777776653321 1 1211   123344 69999 99999999


Q ss_pred             HHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccccc
Q 026311          161 NAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNI  226 (240)
Q Consensus       161 ~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~  226 (240)
                      |++++|+.++++++.+.+++|+++.++|++++||++++.+++|+++|++|.+...+..+||.|-||
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~  291 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKE  291 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999998877666555443

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.90  E-value=5.9e-23  Score=179.06  Aligned_cols=184  Identities=9%  Similarity=0.065  Sum_probs=135.5

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (240)
                      |+++.+++|+++.+++++++|||+++|      +++|+++++.|++++....+                 +.    ..+.
T Consensus       102 a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~-----------------~~----~~~~  154 (296)
T PRK15430        102 ASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG-----------------SL----PIIA  154 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC-----------------Cc----cHHH
Confidence            567888999999999999999999876      67999999999988752111                 11    1467


Q ss_pred             HHHHHHHHHHHHHHHHhhccC-CchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHH
Q 026311           82 LAAVFVLSSTVVLQAATLGDF-PAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSF  160 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~~~-~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l  160 (240)
                      ++++++||.|+++.||..++. .+....+.+++.++.....+..   +.+.. .+...+ ..+..++++.|+.+.++|.+
T Consensus       155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~-~~~~~~~~~~g~~t~i~~~~  229 (296)
T PRK15430        155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTS-HMGQNP-MSLNLLLIAAGIVTTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcc-cccCCc-HHHHHHHHHHHHHHHHHHHH
Confidence            889999999999988865321 1234455666666654432221   11111 121111 11223313344478899999


Q ss_pred             HHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311          161 NAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       161 ~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~  217 (240)
                      |++++|+.||++++.+.+++|++++++|++++||++++.+++|+++|+.|+.+...+
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998887776654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.89  E-value=2.6e-22  Score=173.76  Aligned_cols=185  Identities=19%  Similarity=0.175  Sum_probs=137.4

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (240)
                      ++.+.++.|+++.+++++++|||++++      +++|+.+++.|++++... +.              . .....|+.+.
T Consensus        92 ~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~-~~--------------~-~~~~~g~~~~  149 (281)
T TIGR03340        92 VYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLS-RF--------------A-QHRRKAYAWA  149 (281)
T ss_pred             hhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhcc-cc--------------c-ccchhHHHHH
Confidence            456778999999999999999998876      679999999999887531 10              0 1123688899


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCc---hhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHH
Q 026311           82 LAAVFVLSSTVVLQAATLGDFPA---PMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVC  157 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~~~~~---~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia  157 (240)
                      ++++++|++|+++.|+..++.++   ....+.+++..+++.+.+.....++.   .+.. .+..++.+ +|.+. +++++
T Consensus       150 l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~-~~~~~~~s~l~  224 (281)
T TIGR03340       150 LAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR---SMFP-YARQILPS-ATLGGLMIGGA  224 (281)
T ss_pred             HHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc---chhh-hHHHHHHH-HHHHHHHHHHH
Confidence            99999999999998876444321   12233344444333322222222221   1111 11123444 67888 99999


Q ss_pred             HHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHH
Q 026311          158 QSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYY  213 (240)
Q Consensus       158 ~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l  213 (240)
                      |.+|++++|+.|+++++.+.+++|+++.++|++++||++++.+++|+++|+.|+++
T Consensus       225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            99999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.87  E-value=9.1e-21  Score=166.58  Aligned_cols=200  Identities=14%  Similarity=0.240  Sum_probs=159.1

Q ss_pred             cccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHH
Q 026311            3 TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLL   82 (240)
Q Consensus         3 ~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (240)
                      .++-+++-.++++++++++|||.++.      |++|+++|+.|+++++..+....        ++...+++...||++++
T Consensus       109 ~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~--------~~~~~~~~~i~GDll~l  174 (334)
T PF06027_consen  109 QLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG--------SDSSSGSNPILGDLLAL  174 (334)
T ss_pred             HhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc--------ccCCCCCccchhHHHHH
Confidence            45666778899999999999998865      78999999999998875442110        01123456789999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCC--cccccccCchhHHHHHHHHHH--HHHHHH
Q 026311           83 AAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKL--DFGWEFVGLPETMSYIALGGM--INGVCQ  158 (240)
Q Consensus        83 ~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~i~l~~gi--~t~ia~  158 (240)
                      ++++.||++++++++..|+.+ ......+..++|.++..+...+.|...  +++|+    .....  .+.+.  +..+-|
T Consensus       175 ~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~----~~~~~--~~v~~~~~lf~~y  247 (334)
T PF06027_consen  175 LGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT----SQVIG--LLVGYALCLFLFY  247 (334)
T ss_pred             HHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC----hhhHH--HHHHHHHHHHHHH
Confidence            999999999999999999875 778888888999999888887777532  12333    12222  23333  566777


Q ss_pred             HHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccc
Q 026311          159 SFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENY  223 (240)
Q Consensus       159 ~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~  223 (240)
                      .+....++..+|+...+-.....+++++++++++|++++|..++|.++|++|+++.+..++++++
T Consensus       248 ~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~  312 (334)
T PF06027_consen  248 SLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE  312 (334)
T ss_pred             HHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence            78899999999999999999999999999999999999999999999999999998876654443

Some of the sequences in this family are annotated as putative membrane proteins.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.84  E-value=3.1e-20  Score=165.52  Aligned_cols=192  Identities=12%  Similarity=0.095  Sum_probs=149.9

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (240)
                      +.++-+++|++++++++++++||+++|      ++.|+++.++|+.+.+.  + +             .+ ....|+++.
T Consensus       143 ~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~-~-------------~~-~~~~G~~~~  199 (350)
T PTZ00343        143 THVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--K-E-------------LH-FTWLAFWCA  199 (350)
T ss_pred             HHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--c-c-------------ch-hHHHHHHHH
Confidence            346678999999999999999999865      68999999999988752  1 1             11 235799999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCC------chhHHHHHHHHHHHHHHHHHHHhhcCCC-cccccc---cC-chhHHHHHHHH
Q 026311           82 LAAVFVLSSTVVLQAATLGDFP------APMSLCAITSLIGVFVTTVVELLQNHKL-DFGWEF---VG-LPETMSYIALG  150 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~~~~------~~~~~~~~~~l~g~l~l~~~~~~~~~~~-~~~~~~---~~-~~~~~~i~l~~  150 (240)
                      ++|+++|++|+++.||..++++      ++.....++...|++.++|+....|... ...|..   .. ...+..+ +|.
T Consensus       200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-l~~  278 (350)
T PTZ00343        200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGII-IFK  278 (350)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHH-HHH
Confidence            9999999999999999876532      2444556668899999999887665321 101110   00 1112233 454


Q ss_pred             HHHHHHHHHHHHH----HHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311          151 GMINGVCQSFNAW----AIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       151 gi~t~ia~~l~~~----al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~  217 (240)
                      .+.++++|.+|+.    ++++.+|...++..++.|++++++|++++||++++.+++|+++++.|+++.++-
T Consensus       279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            3388999999995    999999999999999999999999999999999999999999999999987653

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.80  E-value=1.6e-18  Score=148.72  Aligned_cols=186  Identities=19%  Similarity=0.233  Sum_probs=141.5

Q ss_pred             ccccCcchHHHHHHHHH-HHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCc-hHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAW-TFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDRE-KIIGCV   79 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~-~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~G~~   79 (240)
                      ++.+.++.|+++.++++ ++++||++++      ++.|+++++.|++++...++               .+.. ...|+.
T Consensus        99 ~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~---------------~~~~~~~~g~~  157 (292)
T COG0697          99 ASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGG---------------GGGILSLLGLL  157 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCC---------------cchhHHHHHHH
Confidence            45678899999999997 6669998865      67999999999988863211               0111 468999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCchhHHHH-HHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHH
Q 026311           80 YLLAAVFVLSSTVVLQAATLGDFPAPMSLCA-ITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVC  157 (240)
Q Consensus        80 l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~-~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia  157 (240)
                      +.+.++++|+++.+..|+.. +. ++..... +++. + ..+............ ...   ...+..+ .+.|+ +++++
T Consensus       158 ~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-~~~---~~~~~~~-~~~g~~~~~i~  228 (292)
T COG0697         158 LALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL-L-ALLLLLLFFLSGFGA-PIL---SRAWLLL-LYLGVFSTGLA  228 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH-H-HHHHHHHHHhccccc-cCC---HHHHHHH-HHHHHHHHHHH
Confidence            99999999999999999877 44 3455555 4544 2 222222222211100 111   1123444 78889 88899


Q ss_pred             HHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311          158 QSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       158 ~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~  217 (240)
                      |.+|++++++.+++.++.+.+++|+++.+++++++||+++..+++|+++++.|+.+.+.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999998766

>TIGR00688 rarD rarD protein

Probab=99.71  E-value=1.3e-16  Score=136.23  Aligned_cols=154  Identities=12%  Similarity=0.147  Sum_probs=107.2

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (240)
                      |+++.+++|+|+++++++++|||+++|      +++|+++++.|++++...++                 +.    ..+.
T Consensus        99 a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~-----------------~~----~~~~  151 (256)
T TIGR00688        99 VSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG-----------------SL----PWEA  151 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC-----------------Cc----hHHH
Confidence            567889999999999999999999876      67999999999987752111                 11    1357


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH---hhcCCCcccccccCchhHHHHHHHHHHHHHHHH
Q 026311           82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVEL---LQNHKLDFGWEFVGLPETMSYIALGGMINGVCQ  158 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~---~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~  158 (240)
                      ++++++|+.|.+..||..++  +......     +.+.+.+...   ...+... ......+..|..+ ++.|+.+.++|
T Consensus       152 l~aa~~~a~~~i~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l-~~~g~~t~i~~  222 (256)
T TIGR00688       152 LVLAFSFTAYGLIRKALKNT--DLAGFCL-----ETLSLMPVAIYYLLQTDFAT-VQQTNPFPIWLLL-VLAGLITGTPL  222 (256)
T ss_pred             HHHHHHHHHHHHHHhhcCCC--CcchHHH-----HHHHHHHHHHHHHHHhccCc-ccccCchhHHHHH-HHHHHHHHHHH
Confidence            88999999999999987543  2222211     1122222221   1111111 0011111234443 56666788999


Q ss_pred             HHHHHHHhhcCceeeeechhHHHHHHHHHHHHH
Q 026311          159 SFNAWAIKKRGPVFVSMFSPIATVISVILSAIT  191 (240)
Q Consensus       159 ~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~  191 (240)
                      .+|++++|+.++++++.+.|++|++++++|++.
T Consensus       223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999864

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.66  E-value=1.3e-15  Score=132.51  Aligned_cols=201  Identities=13%  Similarity=0.198  Sum_probs=149.9

Q ss_pred             cccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHH
Q 026311            3 TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLL   82 (240)
Q Consensus         3 ~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l   82 (240)
                      +++.+++-+||..++.++..||+++      .|.+++.+++.|+++++.++...         .++....+...|+++.+
T Consensus       189 TilSStSs~FtL~la~if~~e~ft~------sKllav~~si~GViiVt~~~s~~---------~~~~~a~~~llG~llaL  253 (416)
T KOG2765|consen  189 TILSSTSSFFTLFLAAIFPVERFTL------SKLLAVFVSIAGVIIVTMGDSKQ---------NSDLPASRPLLGNLLAL  253 (416)
T ss_pred             hhhhhcchHHHHHHHHHcCcchhhH------HHHHHHHHhhccEEEEEeccccc---------cccCCccchhHHHHHHH
Confidence            5677889999999999999999986      48999999999999887543211         11223345679999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCchhHHHHH---HHHHHHHHHHHHHHhhcCC-CcccccccCchhHHHHHHHHHH-HHHHH
Q 026311           83 AAVFVLSSTVVLQAATLGDFPAPMSLCAI---TSLIGVFVTTVVELLQNHK-LDFGWEFVGLPETMSYIALGGM-INGVC  157 (240)
Q Consensus        83 ~aa~~~a~~~vl~~~~~~~~~~~~~~~~~---~~l~g~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~gi-~t~ia  157 (240)
                      ++|+.||+|.++.||...+..+...+..+   ..++.-+++.|..++.+.. .. ..+.+.+.....+ ++.+. +|+++
T Consensus       254 ~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e-~F~lP~~~q~~~v-v~~~ligtvvS  331 (416)
T KOG2765|consen  254 LSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEE-RFELPSSTQFSLV-VFNNLIGTVVS  331 (416)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccC-cccCCCCceeEee-eHhhHHHHHHH
Confidence            99999999999999876554223333222   2333334444443332210 01 2222222233333 67888 99999


Q ss_pred             HHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccc
Q 026311          158 QSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGK  220 (240)
Q Consensus       158 ~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~  220 (240)
                      -++|.|+.-...|..+.+-+.++...|++.+.++-|.++++.+++|.+.|++|.++++.....
T Consensus       332 DylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~  394 (416)
T KOG2765|consen  332 DYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN  394 (416)
T ss_pred             HHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence            999999999999999999999999999999999999999999999999999999999876543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.59  E-value=2.6e-14  Score=124.45  Aligned_cols=185  Identities=14%  Similarity=0.093  Sum_probs=134.3

Q ss_pred             chHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccC-CchHHHHHHHHHHHH
Q 026311            8 LAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFD-REKIIGCVYLLAAVF   86 (240)
Q Consensus         8 ~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~G~~l~l~aa~   86 (240)
                      +.|++..+.+.+++|||.+.|++  ....+|+++.+.|++++...+....          .+.+ .+...|.++.+++++
T Consensus        95 ~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~----------~~~~~~~~~~Gi~~~l~sg~  162 (290)
T TIGR00776        95 FQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA----------GIKSEFNFKKGILLLLMSTI  162 (290)
T ss_pred             HHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc----------ccccccchhhHHHHHHHHHH
Confidence            67888899999999999876521  1228899999999988753221100          0000 233579999999999


Q ss_pred             HHHHHHHHHHHhhccCCchhHHHHHH---HHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 026311           87 VLSSTVVLQAATLGDFPAPMSLCAIT---SLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAW  163 (240)
Q Consensus        87 ~~a~~~vl~~~~~~~~~~~~~~~~~~---~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~  163 (240)
                      +|+.|.+..|+.  ++ ++...+..|   ++++++...+..  ...  . ++.  .+..+..+ + .|+.++++|.+|..
T Consensus       163 ~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~~--~-~~~--~~~~~~~~-~-~Gi~~~ia~~~y~~  230 (290)
T TIGR00776       163 GYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--ILA--K-PLK--KYAILLNI-L-PGLMWGIGNFFYLF  230 (290)
T ss_pred             HHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH--hcc--c-chH--HHHHHHHH-H-HHHHHHHHHHHHHH
Confidence            999999998875  35 477774444   444444333322  111  1 221  11223343 3 66667999999999


Q ss_pred             HHh-hcCceeeeechhHHHHHHHHHHHHHhCCCccchhh----HHHHHHHHHHHHHhh
Q 026311          164 AIK-KRGPVFVSMFSPIATVISVILSAITLGDSIDIGSL----SGMFLMFAGLYYVLW  216 (240)
Q Consensus       164 al~-~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~i----iG~~lIl~Gv~l~~~  216 (240)
                      +.+ +.+++.++...+++|+.+++++++++||+.+..++    +|.++|+.|+.+...
T Consensus       231 ~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       231 SAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            999 99999999999999999999999999999999999    999999999988654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.58  E-value=4.9e-14  Score=117.06  Aligned_cols=166  Identities=11%  Similarity=0.018  Sum_probs=129.1

Q ss_pred             hhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 026311           35 KILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSL  114 (240)
Q Consensus        35 ~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l  114 (240)
                      ..+-+.+++.|+.++. ..+++             .++....|..+.+.+..||++|.+..+|..+..+ ..+-+...++
T Consensus       121 d~vwvaLAvlGi~lL~-p~~~~-------------~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~  185 (292)
T COG5006         121 DFVWVALAVLGIWLLL-PLGQS-------------VWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGML  185 (292)
T ss_pred             hHHHHHHHHHHHHhhe-eccCC-------------cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHH
Confidence            5567888999998774 22221             1223468999999999999999999999875543 5677788999


Q ss_pred             HHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhC
Q 026311          115 IGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLG  193 (240)
Q Consensus       115 ~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lg  193 (240)
                      .+++..+|+......+.-.+++    . +..- +-.|+ +|++.|.+-..++++.++..-+..+.+||.++.+.|++++|
T Consensus       186 vAaviv~Pig~~~ag~~l~~p~----l-l~la-LgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~  259 (292)
T COG5006         186 VAALIVLPIGAAQAGPALFSPS----L-LPLA-LGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLG  259 (292)
T ss_pred             HHHHHHhhhhhhhcchhhcChH----H-HHHH-HHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhc
Confidence            9999999998753221101222    1 2222 46777 99999999999999999999999999999999999999999


Q ss_pred             CCccchhhHHHHHHHHHHHHHhhccccc
Q 026311          194 DSIDIGSLSGMFLMFAGLYYVLWAKGKE  221 (240)
Q Consensus       194 E~~~~~~iiG~~lIl~Gv~l~~~~~~~~  221 (240)
                      |++|+.|++|.+.|+.+..=..+..+|+
T Consensus       260 e~ls~~qwlaI~~ViaAsaG~~lt~~~~  287 (292)
T COG5006         260 ETLTLIQWLAIAAVIAASAGSTLTARKP  287 (292)
T ss_pred             CCCCHHHHHHHHHHHHHHhccccccCCC
Confidence            9999999999999998876555544433

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.57  E-value=4.2e-15  Score=124.31  Aligned_cols=202  Identities=16%  Similarity=0.157  Sum_probs=143.7

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (240)
                      |++|...+|+||.+++|.++||+.+.      ...+|..+.+.|+++++  +.+.... ++++..+...-+....|..-.
T Consensus       126 A~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIv--RPpFlFG-~~t~g~~~s~~~~~~~gt~aa  196 (346)
T KOG4510|consen  126 AVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIV--RPPFLFG-DTTEGEDSSQVEYDIPGTVAA  196 (346)
T ss_pred             eEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEe--cCCcccC-CCccccccccccccCCchHHH
Confidence            67899999999999999999999874      46899999999999986  2232222 111111111112234567777


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q 026311           82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFN  161 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~  161 (240)
                      +.+++.-|.--++.|+..|+.+ .+....|..+++.+..++.....+.   .+|+..+.. ++.. +.+|+.+.+.+.+.
T Consensus       197 i~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig~---~~lP~cgkd-r~l~-~~lGvfgfigQIll  270 (346)
T KOG4510|consen  197 ISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIGA---VQLPHCGKD-RWLF-VNLGVFGFIGQILL  270 (346)
T ss_pred             HHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhccc---eecCccccc-eEEE-EEehhhhhHHHHHH
Confidence            7777777777777788877764 3434455556666655554443332   133322212 2222 56777777899999


Q ss_pred             HHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311          162 AWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK  218 (240)
Q Consensus       162 ~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~  218 (240)
                      +.++|+-.+..+++..+.+-++|.++..+++||.++++.+.|+++++.....+..+|
T Consensus       271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998877765443

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.56  E-value=1.9e-14  Score=108.49  Aligned_cols=124  Identities=18%  Similarity=0.219  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHHHHHHH
Q 026311           86 FVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQSFNAWA  164 (240)
Q Consensus        86 ~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~l~~~a  164 (240)
                      ++||.+.++.|+..++. |+...+.++++.+++ +++.....+......++.   ..+... ++.++ ++++++.+|+++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~a   74 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKPFKNLSP---RQWLWL-LFLGLLGTALAYLLYFYA   74 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhccccccCCCh---hhhhhh-hHhhccceehHHHHHHHH
Confidence            47999999999998887 489999999999988 666666554321102221   123344 67788 899999999999


Q ss_pred             HhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311          165 IKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL  215 (240)
Q Consensus       165 l~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~  215 (240)
                      +++.++++++.+.+++|+++.+++++++||++++.+++|.++++.|++++.
T Consensus        75 ~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   75 LKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.56  E-value=2.5e-13  Score=118.84  Aligned_cols=200  Identities=19%  Similarity=0.255  Sum_probs=149.8

Q ss_pred             cchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHH
Q 026311            7 NLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVF   86 (240)
Q Consensus         7 ~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~   86 (240)
                      +..|+++++++.+++++|.+++      |+.++++-.+|+++....+......       ......+...|+++++++.+
T Consensus        98 s~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~-------~~~~~~~~~~G~~ll~~sl~  164 (303)
T PF08449_consen   98 SSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS-------SNSSSFSSALGIILLLLSLL  164 (303)
T ss_pred             hhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc-------cccccccchhHHHHHHHHHH
Confidence            4679999999999988877654      7899999999998876433211100       11111223359999999999


Q ss_pred             HHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHh--hcCCCccccc--ccCchhHHHHHHHHHHHHHHHHHHH
Q 026311           87 VLSSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELL--QNHKLDFGWE--FVGLPETMSYIALGGMINGVCQSFN  161 (240)
Q Consensus        87 ~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~--~~~~~~~~~~--~~~~~~~~~i~l~~gi~t~ia~~l~  161 (240)
                      +-+...++++|..++++ ++.+...+..+++.+..++....  .++..+ .++  ...+..+..+ +...+++.++....
T Consensus       165 ~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~-~~~f~~~~p~~~~~l-~~~s~~~~~g~~~i  242 (303)
T PF08449_consen  165 LDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRS-AIRFISAHPSVLLYL-LLFSLTGALGQFFI  242 (303)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH-HHHHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence            99999999999987654 46788899999998888877776  333211 121  1111122222 33333566777777


Q ss_pred             HHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311          162 AWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE  221 (240)
Q Consensus       162 ~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~  221 (240)
                      ++.+++.||...++...+--+..++++++++|+++++.+++|.++++.|..+.++.|+|+
T Consensus       243 ~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  243 FYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            889999999999999999999999999999999999999999999999999988777655

; GO: 0055085 transmembrane transport

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.50  E-value=6.5e-13  Score=99.57  Aligned_cols=134  Identities=20%  Similarity=0.269  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHH
Q 026311           78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVC  157 (240)
Q Consensus        78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia  157 (240)
                      .++.+++|++|++..++.|-=.|+. ||...|+.-.....+.+....+..++... .-+.. ...|.-+ ...|++++++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~-~~~~~-~k~~lfl-ilSGla~gls   80 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQA-GGEIG-PKSWLFL-ILSGLAGGLS   80 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceec-ccccC-cceehhh-hHHHHHHHHH
Confidence            5788999999999999988767776 68888888888887777777766554211 10111 1122232 5677789999


Q ss_pred             HHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311          158 QSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL  215 (240)
Q Consensus       158 ~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~  215 (240)
                      ..+|++++++..++++....-+.|+++++++++++||+++..+++|+.+|.+|.+++.
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999999999999999999987754

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.45  E-value=3.2e-12  Score=108.59  Aligned_cols=182  Identities=13%  Similarity=0.106  Sum_probs=131.5

Q ss_pred             CcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHH
Q 026311            6 PNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAV   85 (240)
Q Consensus         6 ~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa   85 (240)
                      ++.+|++..+++.+++|||+++      .|+++++++.+|+....+..|.                ..+     ..+.=|
T Consensus       105 Y~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g~----------------lpw-----val~la  157 (293)
T COG2962         105 YFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLGS----------------LPW-----VALALA  157 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcCC----------------CcH-----HHHHHH
Confidence            4578999999999999999975      5789999999999988764331                112     244557


Q ss_pred             HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 026311           86 FVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAI  165 (240)
Q Consensus        86 ~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al  165 (240)
                      ++|+.|-.+-|+. + . |+.+--..-++.-....+.+.+..+...+ ......+..+..+ +..|+.|+++..++..+-
T Consensus       158 ~sf~~Ygl~RK~~-~-v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~-~~~~~~~~~~~LL-v~aG~vTavpL~lf~~aa  232 (293)
T COG2962         158 LSFGLYGLLRKKL-K-V-DALTGLTLETLLLLPVALIYLLFLADSGQ-FLQQNANSLWLLL-VLAGLVTAVPLLLFAAAA  232 (293)
T ss_pred             HHHHHHHHHHHhc-C-C-chHHhHHHHHHHHhHHHHHHHHHHhcCch-hhhcCCchHHHHH-HHhhHHHHHHHHHHHHHH
Confidence            8999999874443 2 3 34444344444333333333333333221 0110111223332 566669999999999999


Q ss_pred             hhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311          166 KKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG  219 (240)
Q Consensus       166 ~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~  219 (240)
                      |+.+-+..+.+.|++|..-.+++++++||+++..+.+..++|-+|+.+..++.-
T Consensus       233 ~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l  286 (293)
T COG2962         233 KRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL  286 (293)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887654

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.35  E-value=1e-12  Score=109.52  Aligned_cols=180  Identities=14%  Similarity=0.251  Sum_probs=138.0

Q ss_pred             HHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHHHH
Q 026311           13 IFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTV   92 (240)
Q Consensus        13 t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~   92 (240)
                      +.+++|+++|.|-+      ..|+.|+++|+.|++++++.+         .+++++.++++...||.+++++|-+||+.+
T Consensus       118 v~~lsw~fLktrYr------lmki~gV~iCi~GvvmvV~sD---------V~agd~aggsnp~~GD~lvi~GATlYaVSN  182 (336)
T KOG2766|consen  118 VLVLSWFFLKTRYR------LMKISGVVICIVGVVMVVFSD---------VHAGDRAGGSNPVKGDFLVIAGATLYAVSN  182 (336)
T ss_pred             HHHHHHHHHHHHHh------hheeeeEEeEecceEEEEEee---------eccccccCCCCCccCcEEEEecceeeeecc
Confidence            45688999877665      468999999999999998643         223345566778899999999999999999


Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCC-c-ccccccCchhHHHHHHHHHH--HHHHHHHHHHHHHhhc
Q 026311           93 VLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKL-D-FGWEFVGLPETMSYIALGGM--INGVCQSFNAWAIKKR  168 (240)
Q Consensus        93 vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~-~-~~~~~~~~~~~~~i~l~~gi--~t~ia~~l~~~al~~~  168 (240)
                      +....+.|+. |...+.....++|+++..+- ++.++.. . ++|.    ... .  .|++.  +-.+-|.+....+|..
T Consensus       183 v~EEflvkn~-d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~----~~i-~--~yl~f~L~MFllYsl~pil~k~~  253 (336)
T KOG2766|consen  183 VSEEFLVKNA-DRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWD----SAI-F--LYLRFALTMFLLYSLAPILIKTN  253 (336)
T ss_pred             ccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeeh----HHH-H--HHHHHHHHHHHHHHhhHHheecC
Confidence            9998888887 47888899999999998776 5555432 1 2343    112 1  34444  4445566666788999


Q ss_pred             CceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311          169 GPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK  218 (240)
Q Consensus       169 g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~  218 (240)
                      |++...+-....-.++.+.  ..+|-+++|...+..+.+..|+++...++
T Consensus       254 ~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re  301 (336)
T KOG2766|consen  254 SATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE  301 (336)
T ss_pred             CceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence            9999988888888888888  56788899999999999999998865443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.20  E-value=5e-10  Score=96.93  Aligned_cols=134  Identities=14%  Similarity=0.129  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHH
Q 026311           78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVC  157 (240)
Q Consensus        78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia  157 (240)
                      .++.++++++||.+.+.+||..++.+ +  .+.+.+..+++.+.|+....... . .|+..... +...++..++.....
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~~   76 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLAQ-V-GWSRLPAT-FWLLLAISAVANMVY   76 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhccc-C-CCCCcchh-hHHHHHHHHHHHHHH
Confidence            35788999999999999998766532 3  34555566666666665542111 1 23321111 222212333367788


Q ss_pred             HHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311          158 QSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       158 ~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~  217 (240)
                      +.++++++++.+++.++.+.+..|+++.+++++++||+++..+++|.++++.|+.++..+
T Consensus        77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            889999999999999999999999999999999999999999999999999999887653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.19  E-value=4.5e-10  Score=97.98  Aligned_cols=140  Identities=15%  Similarity=0.144  Sum_probs=108.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH
Q 026311           73 EKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM  152 (240)
Q Consensus        73 ~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi  152 (240)
                      +...|.++++.++++|+...+..|.. .+.+ +..+.+++++++.+.++++.....+.....-.......+ .. ...+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKI-FM-LAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHH-HH-HHHHH
Confidence            34689999999999999999998764 5664 899999999999887776654432111000000011111 21 23455


Q ss_pred             -HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311          153 -INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW  216 (240)
Q Consensus       153 -~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~  216 (240)
                       +.++.+.++++++++.+++.+++..+..|++.+++++++++|+++..+++|.++.+.|+.++.+
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence             7778899999999999999999999999999999999999999999999999999999888653

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.12  E-value=1.2e-09  Score=83.80  Aligned_cols=122  Identities=11%  Similarity=0.109  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHH
Q 026311           77 GCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-ING  155 (240)
Q Consensus        77 G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~  155 (240)
                      |.++++.+.++-+...++.|+=.++.++ ...... .    +. .....   .  + .         ... +|+|+ +.+
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~~-~~~~~---~--~-p---------~~~-i~lgl~~~~   59 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----IA-ALLAF---G--L-A---------LRA-VLLGLAGYA   59 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----HH-HHHHH---h--c-c---------HHH-HHHHHHHHH
Confidence            6677888888888888888776665442 221111 0    00 00000   0  0 0         122 68888 999


Q ss_pred             HHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHH--HhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311          156 VCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAI--TLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE  221 (240)
Q Consensus       156 ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l--~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~  221 (240)
                      ++|.+|.+++++.+.+.+..+..+.++...+.++.  ++||++++.+++|.++|++|+++++++++|+
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~~  127 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKA  127 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence            99999999999999999999999999888888885  8999999999999999999999988655543

>TIGR00688 rarD rarD protein

Probab=99.06  E-value=3.6e-09  Score=90.18  Aligned_cols=138  Identities=15%  Similarity=0.127  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCc--ccccc-cCchhHHHHHHHHHH
Q 026311           76 IGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLD--FGWEF-VGLPETMSYIALGGM  152 (240)
Q Consensus        76 ~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~--~~~~~-~~~~~~~~i~l~~gi  152 (240)
                      .|..++++++++|+...+..|. ..+. ++.++..+.++++++.+.++.....+...  ..++. .....+..+ ...|+
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSL-LLCGL   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHH-HHHHH
Confidence            4788999999999999999887 4456 58999999999998887766544332100  01110 011112222 34444


Q ss_pred             HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW  216 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~  216 (240)
                      ..++.+.++++++++.++..++...+..|++.+++++++++|+++..+++|.++.++|+.++..
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            5667888999999999999999999999999999999999999999999999999999887643

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.01  E-value=6.5e-09  Score=81.49  Aligned_cols=139  Identities=20%  Similarity=0.263  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc------CCchhHHHHHHHHHHHHHHHHHHHhhcCCCccc--ccccC-----chhH
Q 026311           77 GCVYLLAAVFVLSSTVVLQAATLGD------FPAPMSLCAITSLIGVFVTTVVELLQNHKLDFG--WEFVG-----LPET  143 (240)
Q Consensus        77 G~~l~l~aa~~~a~~~vl~~~~~~~------~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~--~~~~~-----~~~~  143 (240)
                      |.++.+.|.++.|+++++.|+..++      ..++..+..+....+.+.+++.+++.|+.....  .....     +...
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5688999999999999999987655      236889999999999999999998887643101  11100     1122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311          144 MSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL  215 (240)
Q Consensus       144 ~~i~l~~gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~  215 (240)
                      ...++..|+.........++.+++.+|...++...+--+..+++|++++||++++.+++|.++.+.|.++.+
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            222134444444555567789999999999999999999999999999999999999999999999987643

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.00  E-value=1e-08  Score=84.85  Aligned_cols=192  Identities=15%  Similarity=0.137  Sum_probs=140.9

Q ss_pred             hHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHH
Q 026311            9 APGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVL   88 (240)
Q Consensus         9 ~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~   88 (240)
                      -|+=++++++++.+++-.||      |...++.-+.|+.+.. ++.....         ...+.....|.++++++--.=
T Consensus       121 KPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~Kv~---------g~e~~t~g~GElLL~lSL~mD  184 (337)
T KOG1580|consen  121 KPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENKVG---------GAEDKTFGFGELLLILSLAMD  184 (337)
T ss_pred             CCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccccccC---------CCcccccchHHHHHHHHHHhc
Confidence            46777888999877666654      7899999999998764 5422111         111234568999999988777


Q ss_pred             HHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCc-ccccccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026311           89 SSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKLD-FGWEFVGLPETMSYIALGGMINGVCQSFNAWAIK  166 (240)
Q Consensus        89 a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al~  166 (240)
                      +.-...|.|.++.+. ..-+++.++.+.+++.+..-.++.++..+ ..+....+..++-+ ...++++.++..+.+..+.
T Consensus       185 GlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l-~l~ai~s~LGQ~fIF~tv~  263 (337)
T KOG1580|consen  185 GLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDL-TLLAIASCLGQWFIFKTVE  263 (337)
T ss_pred             ccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHH-HHHHHHHHhhhHHHHHHHH
Confidence            777888888877653 34567777888887776554444443111 01111122334454 5566789999999999999


Q ss_pred             hcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311          167 KRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       167 ~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~  217 (240)
                      ..||-.-|+....--.++++.++++++.+++..||+|..+++.++..=...
T Consensus       264 ~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~  314 (337)
T KOG1580|consen  264 EFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD  314 (337)
T ss_pred             HhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence            999999999999999999999999999999999999999999998775443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.95  E-value=1.6e-09  Score=94.76  Aligned_cols=194  Identities=13%  Similarity=0.128  Sum_probs=139.7

Q ss_pred             cchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHH
Q 026311            7 NLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVF   86 (240)
Q Consensus         7 ~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~   86 (240)
                      .++|.++.++++++.+|+.+++.      ++.++.-..|+.+-..  +              +.+ -...|.+..+++.+
T Consensus       117 a~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~--~--------------e~~-fn~~G~i~a~~s~~  173 (316)
T KOG1441|consen  117 ALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV--T--------------ELS-FNLFGFISAMISNL  173 (316)
T ss_pred             hhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee--c--------------ccc-ccHHHHHHHHHHHH
Confidence            57899999999999999988764      4677777777765432  1              112 23589999999999


Q ss_pred             HHHHHHHHHHHhhc--cCC-chhHHHHHHHHHHHHHHH-HHHHhhcCCCcccccc-cCchhHHHHHHHHHHHHHHHHHHH
Q 026311           87 VLSSTVVLQAATLG--DFP-APMSLCAITSLIGVFVTT-VVELLQNHKLDFGWEF-VGLPETMSYIALGGMINGVCQSFN  161 (240)
Q Consensus        87 ~~a~~~vl~~~~~~--~~~-~~~~~~~~~~l~g~l~l~-~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~gi~t~ia~~l~  161 (240)
                      +.+..+++.++..+  ++. |++.+..++.-.+.+.++ |.....|+.....+.. .++...... ++..++........
T Consensus       174 ~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sv~~f~~Nls~  252 (316)
T KOG1441|consen  174 AFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLIL-LLNSVLAFLLNLSA  252 (316)
T ss_pred             HHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHH-HHHHHHHHHHHHHH
Confidence            99999999999873  222 678888888888888888 7766554321000111 111111121 22222222222345


Q ss_pred             HHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccc
Q 026311          162 AWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYS  224 (240)
Q Consensus       162 ~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~  224 (240)
                      ++.+++.+|..-++...+-=++.++.|+++++|++++.+..|.++.++|+++.++.|.|++++
T Consensus       253 f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~  315 (316)
T KOG1441|consen  253 FLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG  315 (316)
T ss_pred             HHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            678999999999998888888899999999999999999999999999999998877766654

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.88  E-value=7.2e-08  Score=81.96  Aligned_cols=191  Identities=16%  Similarity=0.146  Sum_probs=119.8

Q ss_pred             CcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHH
Q 026311            6 PNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAV   85 (240)
Q Consensus         6 ~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa   85 (240)
                      ..+-.++|++++++++|+|++.+      ||+++.+-+.|++++-.......+...+........+.+...|.+++++++
T Consensus        50 ~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~  123 (244)
T PF04142_consen   50 SQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAA  123 (244)
T ss_pred             HhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHheeecCCccccccccccccccccccchhHhHHHHHHHHH
Confidence            34567899999999999998866      679999999999876432111100000000000112334578999999999


Q ss_pred             HHHHHHHHHHHHhhccCCch-hHHHHHHHHHHHHHHHHHHHhhcCCC-c-ccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 026311           86 FVLSSTVVLQAATLGDFPAP-MSLCAITSLIGVFVTTVVELLQNHKL-D-FGWEFVGLPETMSYIALGGMINGVCQSFNA  162 (240)
Q Consensus        86 ~~~a~~~vl~~~~~~~~~~~-~~~~~~~~l~g~l~l~~~~~~~~~~~-~-~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~  162 (240)
                      ++=++-.++..|..|+.+.+ ...+....+.|.+..++.....+... . ...-..++...+.+++    ..+++=.+..
T Consensus       124 ~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~----~~a~gGllva  199 (244)
T PF04142_consen  124 FLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIF----LQAIGGLLVA  199 (244)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHH----HHHHhhHHHH
Confidence            99999999999998875423 34455555666666555443332211 0 0110111111111112    3333334455


Q ss_pred             HHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHH
Q 026311          163 WAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFL  206 (240)
Q Consensus       163 ~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~l  206 (240)
                      ..+|+.+...=+....+.-+.+.++++.++|.+++....+|.++
T Consensus       200 ~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  200 FVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            56777777666677778888999999999999999999999875

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.78  E-value=1.2e-07  Score=84.89  Aligned_cols=136  Identities=14%  Similarity=0.138  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHH
Q 026311           78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGV  156 (240)
Q Consensus        78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~i  156 (240)
                      .+-++..-++|+.+.++.|...+.--++....++-+.++++.++++++..++..  .++......+..+ ...|+ + .+
T Consensus        15 ~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~--~~~~~~~~~~~~l-~l~g~~g-~~   90 (358)
T PLN00411         15 LTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR--SLPPLSVSILSKI-GLLGFLG-SM   90 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc--ccCcchHHHHHHH-HHHHHHH-HH
Confidence            455667788999999998888765336888999999999999998887654311  1110001122232 34566 5 45


Q ss_pred             HHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHH------hCCCccchhhHHHHHHHHHHHHHhhc
Q 026311          157 CQSFNAWAIKKRGPVFVSMFSPIATVISVILSAIT------LGDSIDIGSLSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       157 a~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~------lgE~~~~~~iiG~~lIl~Gv~l~~~~  217 (240)
                      .+.++++++++.+++.++++.++.|++.+++++++      ++|+++..+++|.++-++|+.++...
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            66689999999999999999999999999999999      69999999999999999999887653

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.76  E-value=5.8e-08  Score=72.71  Aligned_cols=71  Identities=15%  Similarity=0.325  Sum_probs=63.7

Q ss_pred             HHHH-HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccc
Q 026311          149 LGGM-INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGK  220 (240)
Q Consensus       149 ~~gi-~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~  220 (240)
                      ..|+ +...++.+|+++.++.++ .++....+.|+++.++++++++|+++..+++|.+++.+|+.++.+.+-+
T Consensus        39 ~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   39 LAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            4456 566899999999999995 8889999999999999999999999999999999999999999886543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.70  E-value=4.6e-07  Score=78.84  Aligned_cols=131  Identities=16%  Similarity=0.189  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHH
Q 026311           78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGV  156 (240)
Q Consensus        78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~i  156 (240)
                      .+..+...+.|+...+..|...++. +|...+.+-+..+++.++++......... ..     ..+... ...|+ ....
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~-----~~~~~~-~~~g~~~~~~   81 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHPLP-TL-----RQWLNA-ALIGLLLLAV   81 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cH-----HHHHHH-HHHHHHHHHH
Confidence            4557778899999999998777766 59999999999999888877654322111 11     122222 34555 5556


Q ss_pred             HHHHHHHHH-hhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311          157 CQSFNAWAI-KKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       157 a~~l~~~al-~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~  217 (240)
                      .+.+++++. ++.+++.++...++.|++..+++++ +||+++..+++|..+.++|++++.+.
T Consensus        82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            777888888 8999999999999999999999985 79999999999999999999887653

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.67  E-value=3.1e-07  Score=78.03  Aligned_cols=118  Identities=14%  Similarity=-0.000  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHHHHHHHHh
Q 026311           88 LSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQSFNAWAIK  166 (240)
Q Consensus        88 ~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~l~~~al~  166 (240)
                      |+...+..|...++..++.....+.++.+.+.+.+..... .  . ..      .+.-. +..|. +..+.+.+++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~--~-~~------~~~~~-~~~~~~~~~l~~~~~~~a~~   69 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-P--P-LK------RLLRL-LLLGALQIGVFYVLYFVAVK   69 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-c--C-Hh------HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            3344455565555444578888889888888776654322 1  1 11      11122 34455 77788999999999


Q ss_pred             hcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311          167 KRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW  216 (240)
Q Consensus       167 ~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~  216 (240)
                      +.+++.+++...+.|++..+++.++++|++++.+++|..+.++|+.++..
T Consensus        70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            99999999999999999999999999999999999999999999988764

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.63  E-value=7.7e-07  Score=77.71  Aligned_cols=125  Identities=19%  Similarity=0.206  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHH
Q 026311           78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGV  156 (240)
Q Consensus        78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~i  156 (240)
                      .++.++++++|+...+..|...++. +|...+++-+.++++.++++..  .+. . .+.        .+ +..|+ ....
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~--~~~-~-~~~--------~~-~~~g~~~~~~   71 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVA--RPK-V-PLN--------LL-LGYGLTISFG   71 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhc--CCC-C-chH--------HH-HHHHHHHHHH
Confidence            3668899999999999999877777 5999999999887766554321  111 1 111        11 22344 3445


Q ss_pred             HHHHHHHHHhh-cCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311          157 CQSFNAWAIKK-RGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW  216 (240)
Q Consensus       157 a~~l~~~al~~-~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~  216 (240)
                      .+.+++.+.++ .++..+++..++.|++..++++++++|+++..+++|.++.++|+.+...
T Consensus        72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            55566778887 5778999999999999999999999999999999999999999988764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.61  E-value=6.2e-07  Score=78.17  Aligned_cols=131  Identities=15%  Similarity=0.191  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHH
Q 026311           76 IGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMING  155 (240)
Q Consensus        76 ~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~  155 (240)
                      .+.++.+.++++|+...+..|...+..| |....++-+..+++.+.++.   ..+   .++.. +  +..+ +..++...
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~~---~~~~~-~--~~~~-~~~~l~~~   72 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GFP---RLRQF-P--KRYL-LAGGLLFV   72 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---ccc---ccccc-c--HHHH-HHHhHHHH
Confidence            4577899999999999999998888885 89999999999888876542   111   11110 1  1111 22222333


Q ss_pred             HHHHHHHHHHh----hcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311          156 VCQSFNAWAIK----KRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       156 ia~~l~~~al~----~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~  217 (240)
                      ..+.+++.+++    ..++..++...++.|++..++++++++|+++..+++|.++.++|++++...
T Consensus        73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            34444555554    457778889999999999999999999999999999999999999887643

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.60  E-value=8.7e-07  Score=76.04  Aligned_cols=193  Identities=16%  Similarity=0.230  Sum_probs=135.5

Q ss_pred             HHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHHHH
Q 026311           13 IFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTV   92 (240)
Q Consensus        13 t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~   92 (240)
                      +++...++.+.|.+.+      +.+-..+--.|+.+....+..+ +.       ....+++...|..++...-+.=+.-+
T Consensus       123 Vmlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s~-------~~~g~~ns~~G~~Ll~~~L~fDgfTn  188 (327)
T KOG1581|consen  123 VMLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-SS-------SKSGRENSPIGILLLFGYLLFDGFTN  188 (327)
T ss_pred             HHHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-Cc-------cccCCCCchHhHHHHHHHHHHHhhHH
Confidence            3556677766666554      5566666667776654432211 00       11233467899999999988888888


Q ss_pred             HHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCc-cccc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026311           93 VLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKLD-FGWE-FVGLPETMSYIALGGMINGVCQSFNAWAIKKRG  169 (240)
Q Consensus        93 vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~~-~~~~-~~~~~~~~~i~l~~gi~t~ia~~l~~~al~~~g  169 (240)
                      ..|.++.+++. ++.+++.+..+++++.........+.... +++- ..++. +.-+ +....+.++++.+.+.-+++-|
T Consensus       189 ~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~-~~Di-~l~s~~gavGQ~FI~~TI~~FG  266 (327)
T KOG1581|consen  189 ATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDV-AFDI-LLYSTCGAVGQLFIFYTIERFG  266 (327)
T ss_pred             hHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhH-HHHH-HHHHHhhhhhhheehhhHhhcc
Confidence            88998887643 56888888889988887766332222111 1221 12222 2233 2333467788888889999999


Q ss_pred             ceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311          170 PVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE  221 (240)
Q Consensus       170 ~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~  221 (240)
                      +-.-+..+..-=++.++++.+.+|.++++.|++|..+++.|+++-..-++|+
T Consensus       267 slt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~  318 (327)
T KOG1581|consen  267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK  318 (327)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999876655553

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.56  E-value=5.6e-06  Score=71.21  Aligned_cols=182  Identities=16%  Similarity=0.151  Sum_probs=117.0

Q ss_pred             cchHHHHHHHHHHHhhhcccccccCCcchhhhHHHh--hhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHH
Q 026311            7 NLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLC--VVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAA   84 (240)
Q Consensus         7 ~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~--~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a   84 (240)
                      +.+++|+.+++.+|+-||.++.        +++.+.  ..|+++.+ ++..                +-...|-.++.+|
T Consensus       118 SSsi~FIllFs~if~lEk~~w~--------L~l~v~lI~~Glflft-~KsT----------------qf~i~Gf~lv~~a  172 (349)
T KOG1443|consen  118 SSSILFILLFSLIFKLEKFRWA--------LVLIVLLIAVGLFLFT-YKST----------------QFNIEGFFLVLAA  172 (349)
T ss_pred             ccHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHhhheeEEE-eccc----------------ceeehhHHHHHHH
Confidence            4679999999999999998764        444444  44454443 3321                1235688888777


Q ss_pred             HHHHHHHHHHHHHhhccC----CchhHHHHHHHHHHHHHHHHHHHhhcCCCc----ccccccCc-hhHHHHHHHHHHHHH
Q 026311           85 VFVLSSTVVLQAATLGDF----PAPMSLCAITSLIGVFVTTVVELLQNHKLD----FGWEFVGL-PETMSYIALGGMING  155 (240)
Q Consensus        85 a~~~a~~~vl~~~~~~~~----~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~----~~~~~~~~-~~~~~i~l~~gi~t~  155 (240)
                      .++=++-=.+.+...++.    ++|+.......-.-.+.++|..+.+|+...    -.|..... ..+..+ .+.+.+..
T Consensus       173 S~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~-g~i~l~g~  251 (349)
T KOG1443|consen  173 SLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVI-GLISLGGL  251 (349)
T ss_pred             HHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHH-HHHHHHHH
Confidence            666444333333333332    246655555444555667888888775421    12322222 122222 34444555


Q ss_pred             HHHHH---HHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHH
Q 026311          156 VCQSF---NAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYV  214 (240)
Q Consensus       156 ia~~l---~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~  214 (240)
                      .+|.+   -+-.+.+++.-..+++.-.-=+-..++|....+|+++..-++|..+...|+..-
T Consensus       252 laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  252 LAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            55554   335678888888888888888889999999999999999999999999999875

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.54  E-value=2.2e-06  Score=74.87  Aligned_cols=119  Identities=14%  Similarity=0.105  Sum_probs=89.0

Q ss_pred             HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 026311           91 TVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGP  170 (240)
Q Consensus        91 ~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al~~~g~  170 (240)
                      ++++.|...++++.|+..+.+++.++++...+.......... ..+.   ..+..+ +..|+..++.+.++++++++.++
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~-~~~g~~~~~~~~~~~~~l~~~s~   91 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRL-KISS---ALLKLL-LPVAIVHTIGHVTSNVSLSKVAV   91 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCCH---HHHHHH-HHHHHHHHHHHHHHHHHHHhccH
Confidence            345667777765678999999999987766554211111111 1111   123333 45566446778899999999999


Q ss_pred             eeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHH
Q 026311          171 VFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYV  214 (240)
Q Consensus       171 ~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~  214 (240)
                      +.+++...+.|++.+++++++++|+++..++.|.+++++|+.+.
T Consensus        92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999765

specificities overlap.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.52  E-value=1.4e-05  Score=70.20  Aligned_cols=194  Identities=12%  Similarity=0.068  Sum_probs=123.9

Q ss_pred             hHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHH
Q 026311            9 APGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVL   88 (240)
Q Consensus         9 ~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~   88 (240)
                      -=+.|+++..+++++|++++      ||..+++.++|+.++-....+. .     .+.......+...|...++.+++.=
T Consensus       128 KI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~~-~-----~a~~~~~~~n~~~G~~avl~~c~~S  195 (345)
T KOG2234|consen  128 KILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLSP-T-----GAKSESSAQNPFLGLVAVLVACFLS  195 (345)
T ss_pred             HHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCCC-C-----CccCCCcccchhhhHHHHHHHHHHH
Confidence            34567999999999999876      5799999999998774211111 0     0111223456678999999999999


Q ss_pred             HHHHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHHHHHhhcCCCccccc---ccCc-hhHHHHHHHHHH-HHHHHHHHHH
Q 026311           89 SSTVVLQAATLGDFPA-PMSLCAITSLIGVFVTTVVELLQNHKLDFGWE---FVGL-PETMSYIALGGM-INGVCQSFNA  162 (240)
Q Consensus        89 a~~~vl~~~~~~~~~~-~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~---~~~~-~~~~~i~l~~gi-~t~ia~~l~~  162 (240)
                      +.-.++..+..|+-.. ...-+.-..++|.++.+...+..+.... .|.   ..++ ..|..+ +-.++ +-.++.+   
T Consensus       196 gfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i-~~~gff~G~s~~vw~vV-l~~a~gGLlvs~v---  270 (345)
T KOG2234|consen  196 GFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAI-NEYGFFYGYSSIVWLVV-LLNAVGGLLVSLV---  270 (345)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcccccc-ccCCccccccHHHHHHH-HHHhccchhHHHH---
Confidence            9999998888876322 2334444456666665554443322111 121   1122 223333 44555 4334433   


Q ss_pred             HHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311          163 WAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE  221 (240)
Q Consensus       163 ~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~  221 (240)
                        +|+.+-..=.....+.-++..+.++.++|-++|....+|..+++..+.+....+.++
T Consensus       271 --~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  271 --MKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             --HHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence              344443333344456777888888999999999999999999999999988666554

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.50  E-value=2.8e-06  Score=75.93  Aligned_cols=123  Identities=11%  Similarity=0.106  Sum_probs=90.1

Q ss_pred             HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026311           90 STVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRG  169 (240)
Q Consensus        90 ~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al~~~g  169 (240)
                      .+++..|...+..|-|+.++.++++++++.+.++....-.+.. +... ....+..+ +-.|++....+...+.++++.+
T Consensus        63 ~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~-~~~~-~~~~~~~l-lp~gl~~~~~~~~~~~sl~~~s  139 (350)
T PTZ00343         63 LYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIP-RIKS-LKLFLKNF-LPQGLCHLFVHFGAVISMGLGA  139 (350)
T ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCCC-HHHHHHHH-HHHHHHHHHHHHHHHHHHhhcc
Confidence            3455677777777558999999999998876554322111111 1110 11123333 5666644445666779999999


Q ss_pred             ceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311          170 PVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL  215 (240)
Q Consensus       170 ~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~  215 (240)
                      ++.+.+...++|++.+++++++++|+++..+++|.+++++|+.+..
T Consensus       140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            9999999999999999999999999999999999999999999865

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.46  E-value=5.3e-07  Score=67.44  Aligned_cols=63  Identities=6%  Similarity=0.055  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL  215 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~  215 (240)
                      +-++++.+|.+++++.+.+.+....++.|+.+.+.|++++||++++.+++|.+++++|+.++.
T Consensus        46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            567899999999999999999999999999999999999999999999999999999998764

>TIGR00803 nst UDP-galactose transporter

Probab=98.44  E-value=8.2e-07  Score=74.19  Aligned_cols=198  Identities=17%  Similarity=0.124  Sum_probs=118.0

Q ss_pred             cCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCC-----------CCCCCcCCCCccccCCc
Q 026311            5 MPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTA-----------PAQETSVNTPNIIFDRE   73 (240)
Q Consensus         5 i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~-----------~~~~~~~~~~~~~~~~~   73 (240)
                      .-+..|+++++..+...+||..      +.|++++.+...|++.-.+.+.+.           .... ++..+......+
T Consensus        10 ~~s~~l~~v~l~~~~~~~~~~~------~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~-~~~~~~~~~~g~   82 (222)
T TIGR00803        10 FKQNNLVLIALGNLLAAGKQVT------QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQM-VQSSAKTLMFGN   82 (222)
T ss_pred             HHhcchHHHHHhcccccceeee------hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeec-CCCCcccccccc
Confidence            3456788999999888888876      247899999999987432211100           0000 000000011123


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHH-HHHHHHHHHHHHhhcCCCccccc--ccCchhHHHHHHHH
Q 026311           74 KIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITS-LIGVFVTTVVELLQNHKLDFGWE--FVGLPETMSYIALG  150 (240)
Q Consensus        74 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~-l~g~l~l~~~~~~~~~~~~~~~~--~~~~~~~~~i~l~~  150 (240)
                      ...|...++.++++=+.-.+++++..|+++........+. +++.+.........+......+.  ...+...    .+.
T Consensus        83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  158 (222)
T TIGR00803        83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAV----WIV  158 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHH----HHH
Confidence            4567777777777777777777776555432222222222 22222111111111111000111  1111111    122


Q ss_pred             HHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHH
Q 026311          151 GMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYY  213 (240)
Q Consensus       151 gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l  213 (240)
                      .+..++...+..+.+|+.++...+....+.++++.+++++++||+++..+++|+.+++.|+++
T Consensus       159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            224566666788999999999999999999999999999999999999999999999998754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=6.8e-06  Score=71.17  Aligned_cols=196  Identities=11%  Similarity=0.109  Sum_probs=138.6

Q ss_pred             ccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHH
Q 026311            4 AMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLA   83 (240)
Q Consensus         4 ~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~   83 (240)
                      ++=+.+|+++++....+++.|.+      +.-+..+....+|....+..+                .. -...|-.+++.
T Consensus       108 v~kn~tii~~ai~E~lf~~~~~~------~~v~~Sv~~m~~~s~~~~~~d----------------~s-f~~~gY~w~~~  164 (314)
T KOG1444|consen  108 VFKNLTIILTAIGEVLFFGKRPS------NKVWASVFAMIIGSVAAAFTD----------------LS-FNLRGYSWALA  164 (314)
T ss_pred             HHhhchHHHHHHhHHhhcCcCch------hhHHHHHHHHHHHHHhhcccc----------------ce-ecchhHHHHHH
Confidence            44567889999888888775544      445677777777776544211                11 12358999999


Q ss_pred             HHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCcc-----cccccCchhHHHHHHHHHH-HHHH
Q 026311           84 AVFVLSSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKLDF-----GWEFVGLPETMSYIALGGM-INGV  156 (240)
Q Consensus        84 aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~i~l~~gi-~t~i  156 (240)
                      ..++-+.+.+..|+..+... +......+..+.....+....+++++..+.     .|..  ...+..+ ...++ +-++
T Consensus       165 n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~~~-~lScv~gf~i  241 (314)
T KOG1444|consen  165 NCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLVVM-LLSCVMGFGI  241 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHHHH-HHHHHHHHHH
Confidence            99999999999988764321 346677888888888877777776642110     1211  1122333 56777 6777


Q ss_pred             HHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccccc
Q 026311          157 CQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNI  226 (240)
Q Consensus       157 a~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~  226 (240)
                      .|..+ |..+..+++..++.....-....+-+.++.|++.++..++|..+-++|-.+.+..+.|+++.++
T Consensus       242 sy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~  310 (314)
T KOG1444|consen  242 SYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP  310 (314)
T ss_pred             HHHHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence            77655 8899999999999997778888888888889999999999999988887777776655555444

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.40  E-value=1.4e-05  Score=67.86  Aligned_cols=193  Identities=15%  Similarity=0.128  Sum_probs=121.9

Q ss_pred             cchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcC--CCCccccCCchHHHHHHHHHH
Q 026311            7 NLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSV--NTPNIIFDREKIIGCVYLLAA   84 (240)
Q Consensus         7 ~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~--~~~~~~~~~~~~~G~~l~l~a   84 (240)
                      +-.++-++++++++.++|-+.      +|...+.+-.+|+++-.....++.+..++.  +.+.......|..|..++..|
T Consensus        99 sgsll~nM~~g~il~~k~Ys~------~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~a  172 (330)
T KOG1583|consen   99 SGSLLANMILGWILLGKRYSL------RQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFA  172 (330)
T ss_pred             cCcHHHHHHHHHHhccceeeh------hhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHH
Confidence            346788899999997776655      478999999999987765433322221000  011112233577899999998


Q ss_pred             HHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCC-ccccc--------------ccCchhHHHHHH
Q 026311           85 VFVLSSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKL-DFGWE--------------FVGLPETMSYIA  148 (240)
Q Consensus        85 a~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~-~~~~~--------------~~~~~~~~~i~l  148 (240)
                      -+.=|.-.+++.+.=|+|. ++-+..+|.-+..    +|.-++..++. + +|.              ...+..|    .
T Consensus       173 l~~sa~mgiyqE~~Y~kyGKh~~EalFytH~Ls----LP~Flf~~~div~-~~~~~~~se~~~~p~~g~~vP~~~----~  243 (330)
T KOG1583|consen  173 LLLSAYMGIYQETTYQKYGKHWKEALFYTHFLS----LPLFLFMGDDIVS-HWRLAFKSESYLIPLLGFKVPSMW----V  243 (330)
T ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhc----cchHHHhcchHHH-HHHHHhcCcceeccccCccccHHH----H
Confidence            8888877777766655553 3455666665543    34433333221 1 111              0011122    2


Q ss_pred             HHHHHHHHHHHHHHH----HHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311          149 LGGMINGVCQSFNAW----AIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL  215 (240)
Q Consensus       149 ~~gi~t~ia~~l~~~----al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~  215 (240)
                      |+- +..+.++.=.+    .-.+..+-.+++...+-=.+..+++.+.+..++++.+++|.++++.|-++..
T Consensus       244 yLl-~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  244 YLL-FNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             HHH-HHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            221 23334333333    3445667788888999999999999999999999999999999999966653

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=8.7e-07  Score=75.09  Aligned_cols=207  Identities=11%  Similarity=0.107  Sum_probs=131.0

Q ss_pred             cchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHH
Q 026311            7 NLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVF   86 (240)
Q Consensus         7 ~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~   86 (240)
                      +++.+|+.++.++++|+|=+..      -..++.+-+.|- .+    |.+..         ...+.-...|.++.+.|.+
T Consensus       136 sLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF-~l----GvdqE---------~~~~~ls~~GvifGVlaSl  195 (347)
T KOG1442|consen  136 SLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGF-GL----GVDQE---------GSTGTLSWIGVIFGVLASL  195 (347)
T ss_pred             chhhhHHHHhHHhhcccccccc------cceeehhheehh-ee----ccccc---------cccCccchhhhHHHHHHHH
Confidence            3567899999999998876543      122333222222 21    21100         0112234589999999999


Q ss_pred             HHHHHHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHHHHHhhcCCCccccc--ccCchhHHHHHHHHHH-HHHHHHHHHH
Q 026311           87 VLSSTVVLQAATLGDFPA-PMSLCAITSLIGVFVTTVVELLQNHKLDFGWE--FVGLPETMSYIALGGM-INGVCQSFNA  162 (240)
Q Consensus        87 ~~a~~~vl~~~~~~~~~~-~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~--~~~~~~~~~i~l~~gi-~t~ia~~l~~  162 (240)
                      +-|+..+.+||......| -..++.+....+.++.+|...+.++... .|.  ..++...+.++...|+ +-.+.|.- .
T Consensus       196 ~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~-v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT-g  273 (347)
T KOG1442|consen  196 AVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQA-VVGFPHLPAIKFWILMTLSGLFGFAMGYVT-G  273 (347)
T ss_pred             HHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHH-HcCcccchHHHHHHHHHHHHHHHHHhhhee-e
Confidence            999999999876543333 4678999999999998888776554222 222  1112222232234444 44444422 2


Q ss_pred             HHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccCCCCCcccC
Q 026311          163 WAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAE  235 (240)
Q Consensus       163 ~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~  235 (240)
                      |-+|-.+|..=.+-..--...=.++++.+++|..+..-|-|-.+++.|-....+.|++|++.+....||.|.|
T Consensus       274 ~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s~~~~~  346 (347)
T KOG1442|consen  274 WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRSPATQK  346 (347)
T ss_pred             EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCCccccc
Confidence            4466666666555555555666889999999999999999999999998888887776665554444444443

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.32  E-value=2.1e-05  Score=67.19  Aligned_cols=141  Identities=15%  Similarity=0.183  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-
Q 026311           74 KIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-  152 (240)
Q Consensus        74 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-  152 (240)
                      ...+....+.+++.|+......|...++............+.+.....+.... +.. . .++...+ .+..  ...+. 
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-~~~~~~~-~~~~--~~~~~~   78 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPR-G-LRPALRP-WLLL--LLLALL   78 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcc-c-ccccccc-hHHH--HHHHHH
Confidence            35688888888899999999888776652224445454666665552222221 110 0 1111111 1122  34455 


Q ss_pred             HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHH-HHhCCCccchhhHHHHHHHHHHHHHhhcccc
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSA-ITLGDSIDIGSLSGMFLMFAGLYYVLWAKGK  220 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~-l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~  220 (240)
                      .....+.+|+.++++.++..+....+..|++..++++ ++++|+++..++.|..+.+.|++++.++...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            7888899999999999999999999999999999997 7779999999999999999999998775544

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.26  E-value=1.6e-05  Score=68.16  Aligned_cols=139  Identities=15%  Similarity=0.138  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccc-cCchhHHHHHHHHHHH
Q 026311           75 IIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEF-VGLPETMSYIALGGMI  153 (240)
Q Consensus        75 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~gi~  153 (240)
                      ..|.++.+.|-+.|+.--.+.|- .++.| +.++-++-.+.+...++..-....+... -++. ..+..+... ...++-
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~-~~~~~~~p~~~~~~-~l~a~l   81 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRE-LKQLLKQPKTLLML-ALTALL   81 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhCcHHHHHH-HHHHHH
Confidence            46999999999999998887665 45555 6777777777776665554443332211 1221 111223332 334443


Q ss_pred             HHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311          154 NGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       154 t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~  217 (240)
                      -..-+.+|.|+..+.....+|+-+++.|++.+++|.++++|+++..|++..++..+|+..-.|.
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999999887764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.22  E-value=3.9e-05  Score=65.76  Aligned_cols=178  Identities=19%  Similarity=0.165  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHH
Q 026311           11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSS   90 (240)
Q Consensus        11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~   90 (240)
                      +.+.++++++++|+-+.+++  ..-.+++++-++|+++-...+..+         ...+...+...|...++++.+.|-.
T Consensus        84 vg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lts~~~~~~---------~~~~~~~~~~kgi~~Ll~stigy~~  152 (269)
T PF06800_consen   84 VGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILTSYQDKKS---------DKSSSKSNMKKGILALLISTIGYWI  152 (269)
T ss_pred             HHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHhccccccc---------cccccccchhhHHHHHHHHHHHHHH
Confidence            34677888999997665442  122346677777886654322111         0111234556899999999999999


Q ss_pred             HHHHHHHhhccCCchhHHHHHH---HHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026311           91 TVVLQAATLGDFPAPMSLCAIT---SLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKK  167 (240)
Q Consensus        91 ~~vl~~~~~~~~~~~~~~~~~~---~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al~~  167 (240)
                      |.++.|-.  +. |+.+.-.-|   ++.+++...   ...++...  .+.    .+..  +..|+.=+++-..+..+.++
T Consensus       153 Y~~~~~~~--~~-~~~~~~lPqaiGm~i~a~i~~---~~~~~~~~--~k~----~~~n--il~G~~w~ignl~~~is~~~  218 (269)
T PF06800_consen  153 YSVIPKAF--HV-SGWSAFLPQAIGMLIGAFIFN---LFSKKPFF--EKK----SWKN--ILTGLIWGIGNLFYLISAQK  218 (269)
T ss_pred             HHHHHHhc--CC-ChhHhHHHHHHHHHHHHHHHh---hccccccc--ccc----hHHh--hHHHHHHHHHHHHHHHhHHh
Confidence            99996542  33 355443333   334433322   22222111  111    1222  23344344566678888999


Q ss_pred             cCceeeeechhHHHHHHHHHHHHHhCCCccch----hhHHHHHHHHHHHH
Q 026311          168 RGPVFVSMFSPIATVISVILSAITLGDSIDIG----SLSGMFLMFAGLYY  213 (240)
Q Consensus       168 ~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~----~iiG~~lIl~Gv~l  213 (240)
                      .|.+.+-.+.-+..+++.+.|.+++||+=+..    .++|.++++.|.++
T Consensus       219 ~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  219 NGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             ccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999998865    45677877777543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.21  E-value=1.7e-05  Score=69.16  Aligned_cols=131  Identities=13%  Similarity=0.083  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHH
Q 026311           77 GCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGV  156 (240)
Q Consensus        77 G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~i  156 (240)
                      |.++.+.++++|+..-+..|+.. +.+ +.+..  ...+|++....+......+   ..+. ......++  ..|+.=++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~---~~~~-~~~~~~g~--l~G~~w~i   71 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLP---EFWA-LSIFLVGL--LSGAFWAL   71 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCC---cccc-cHHHHHHH--HHHHHHHh
Confidence            56789999999999999887754 332 33332  3556666655554443321   1110 01111121  12222446


Q ss_pred             HHHHHHHHHhhcCceeeeechh-HHHHHHHHHHHHHhCCCccchh----hHHHHHHHHHHHHHhhc
Q 026311          157 CQSFNAWAIKKRGPVFVSMFSP-IATVISVILSAITLGDSIDIGS----LSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       157 a~~l~~~al~~~g~~~~s~~~~-l~Pv~a~l~~~l~lgE~~~~~~----iiG~~lIl~Gv~l~~~~  217 (240)
                      +...|+.++|+.|.+.+-.+.+ +.|++..+++.+++||+.+..+    ++|.++++.|++++...
T Consensus        72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            6789999999999999988888 8999999999999999999999    99999999998886443

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.20  E-value=1e-05  Score=68.58  Aligned_cols=173  Identities=16%  Similarity=0.245  Sum_probs=123.9

Q ss_pred             CCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHH
Q 026311           31 YSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDRE-KIIGCVYLLAAVFVLSSTVVLQAATLGDFP-APMSL  108 (240)
Q Consensus        31 ~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~  108 (240)
                      ......+...+-.+|+++....+..              .+++ ...|..++-+|-++=|.--.+|.+..+.++ +...+
T Consensus       158 Y~v~d~~aA~lm~lGli~FTLADs~--------------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~Em  223 (367)
T KOG1582|consen  158 YGVHDYIAAMLMSLGLIWFTLADSQ--------------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEM  223 (367)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhcccc--------------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceE
Confidence            3445677888888898877654321              1122 357999998888888887777888777665 34567


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCcccccccC--chhHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHH
Q 026311          109 CAITSLIGVFVTTVVELLQNHKLDFGWEFVG--LPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVI  186 (240)
Q Consensus       109 ~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l  186 (240)
                      ..++..+|.+.++......++-++ .|++-.  +....+..++....+-++.......++..|+..++.....---++++
T Consensus       224 vfySy~iG~vflf~~mvlTge~f~-a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~  302 (367)
T KOG1582|consen  224 VFYSYGIGFVFLFAPMVLTGELFS-AWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTIL  302 (367)
T ss_pred             EEeeecccHHHHHHHHHhcccchh-hhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHH
Confidence            778888888887777776666555 565321  11122221222224445555555668888999999999999999999


Q ss_pred             HHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311          187 LSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK  218 (240)
Q Consensus       187 ~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~  218 (240)
                      ++++++..++|....-|+.++..|+++....+
T Consensus       303 lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  303 LSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            99999999999999999999999999987765

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.16  E-value=8e-06  Score=61.74  Aligned_cols=67  Identities=15%  Similarity=0.269  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHhhcCceeeeec-hhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMF-SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG  219 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~-~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~  219 (240)
                      +-+++|+++.+++|+.+.+.+=.. ..+.-+...+.|++++||++++.+++|.++|+.|++..+...+
T Consensus        39 ~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         39 MISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            567899999999999998877555 4578888999999999999999999999999999999876554

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.14  E-value=3e-05  Score=66.14  Aligned_cols=190  Identities=13%  Similarity=0.188  Sum_probs=116.3

Q ss_pred             hHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHH
Q 026311            9 APGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVL   88 (240)
Q Consensus         9 ~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~   88 (240)
                      .-+||.+++.-+++.+++.+      ||+|+..-..|++.+...+-...+.       .....++...||++++.|-+.-
T Consensus       122 viIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~~~~-------p~~d~s~iitGdllIiiaqiiv  188 (372)
T KOG3912|consen  122 VIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHLVTD-------PYTDYSSIITGDLLIIIAQIIV  188 (372)
T ss_pred             hhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeecccccC-------CccccccchhhhHHHHHHHHHH
Confidence            34789999999999888865      6799999999998774322111000       0111234578999999999999


Q ss_pred             HHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHH----HhhcC-CCcc-------ccc----ccCchhHHHHHHHHH
Q 026311           89 SSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVE----LLQNH-KLDF-------GWE----FVGLPETMSYIALGG  151 (240)
Q Consensus        89 a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~----~~~~~-~~~~-------~~~----~~~~~~~~~i~l~~g  151 (240)
                      |+-.++-.|..+++. +|.....|+.++|.+.+..+.    ++... +++-       +|.    .-....  +  ++.+
T Consensus       189 aiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p--~--l~va  264 (372)
T KOG3912|consen  189 AIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESP--S--LAVA  264 (372)
T ss_pred             HHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCc--h--hHHH
Confidence            999999887776653 689999999999955443333    22211 2110       111    000001  1  1222


Q ss_pred             H-HHHHHHHHHHH----HHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311          152 M-INGVCQSFNAW----AIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL  215 (240)
Q Consensus       152 i-~t~ia~~l~~~----al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~  215 (240)
                      . +..++-.++|.    ..|..+++.=.+.-.+--.+-=+++.....|.++..|+.|.++.+.|+++.+
T Consensus       265 l~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  265 LIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 22222222221    2334444444444444444444555556679999999999999999998865

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.04  E-value=0.00011  Score=64.33  Aligned_cols=129  Identities=13%  Similarity=0.118  Sum_probs=92.4

Q ss_pred             HHHHHHHhhccC-Cc--hhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026311           91 TVVLQAATLGDF-PA--PMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKK  167 (240)
Q Consensus        91 ~~vl~~~~~~~~-~~--~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al~~  167 (240)
                      +.+++++..++. .+  +..++..|+....+...+.......+.. . ..+    +... +..++...++-.+-++++++
T Consensus        15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-~-~~~----~~~~-~~~~~~~~~~~~~~~~al~~   87 (303)
T PF08449_consen   15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-R-KIP----LKKY-AILSFLFFLASVLSNAALKY   87 (303)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-C-cCh----HHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            445666665432 23  6788999999888776665554331111 0 011    1111 22333566777788899999


Q ss_pred             cCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccccc
Q 026311          168 RGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNI  226 (240)
Q Consensus       168 ~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~  226 (240)
                      ++...-.++....|+..++++++++|++.+..++.+.+++.+|+.+....+.++.++.+
T Consensus        88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~  146 (303)
T PF08449_consen   88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN  146 (303)
T ss_pred             CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence            99999999999999999999999999999999999999999999998876655444433

; GO: 0055085 transmembrane transport

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.95  E-value=1.9e-05  Score=65.26  Aligned_cols=152  Identities=11%  Similarity=0.103  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCcccc--cccCchhHHHHHHHH
Q 026311           74 KIIGCVYLLAAVFVLSSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKLDFGW--EFVGLPETMSYIALG  150 (240)
Q Consensus        74 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~i~l~~  150 (240)
                      ...|-+|+...+++=+.|.+..|+..+-.. .....+.|..+.+--.++.+++++|+..+-..  ..+.+. +.++ .-.
T Consensus       153 lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~-l~am-~IS  230 (309)
T COG5070         153 LNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDS-LMAM-FIS  230 (309)
T ss_pred             cCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHH-HHHH-HHH
Confidence            457999999999999999998887653211 23667889999998888888888775321011  112221 2233 566


Q ss_pred             HHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccC
Q 026311          151 GMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIG  227 (240)
Q Consensus       151 gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~  227 (240)
                      |+++..--+.-.|.+|..+.+.-++...+.-.-..+-|.+++||+.+...+....+=...-.+....+.+++++++|
T Consensus       231 gl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~~  307 (309)
T COG5070         231 GLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQKD  307 (309)
T ss_pred             HHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            77433333356689999999999999999999999999999999999999988877665544545555555554443

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.91  E-value=4.6e-05  Score=56.82  Aligned_cols=67  Identities=18%  Similarity=0.165  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHhhcCceeeeec-hhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMF-SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG  219 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~-~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~  219 (240)
                      +-+++|+++..++|+.+.+.+=.. ..+.-+...+.|++++||++++.+++|.++|+.|++..+..++
T Consensus        39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            556788888888888888765433 4567788899999999999999999999999999999876543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.90  E-value=0.0003  Score=62.41  Aligned_cols=71  Identities=17%  Similarity=0.154  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311          149 LGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG  219 (240)
Q Consensus       149 ~~gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~  219 (240)
                      .+++.=.-+-++++.+.+++..+.+.+.....-++.+++++++++|+.++.|++|..+.++|+.++.....
T Consensus        84 lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   84 LLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            34555557888999999999999999999999999999999999999999999999999999988766543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.88  E-value=0.00029  Score=61.34  Aligned_cols=126  Identities=12%  Similarity=0.112  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHH
Q 026311           75 IIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMIN  154 (240)
Q Consensus        75 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t  154 (240)
                      ..|..++++++++|+......|...++.+ +....++.++++++.++++......    .++  . ..+... +..|+..
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~----~~~--~-~~~~~~-~~~g~~~   81 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL----RFA--K-EQRLPL-LFYGVSL   81 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc----cCC--H-HHHHHH-HHHHHHH
Confidence            57899999999999999999888877774 8999999999999888765432111    111  1 112222 3344434


Q ss_pred             HHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311          155 GVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL  215 (240)
Q Consensus       155 ~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~  215 (240)
                      +..+.++++++++.+++.++...+..|++..+++.    |++.  ...+.++.++|++++.
T Consensus        82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~  136 (293)
T PRK10532         82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLL  136 (293)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheee
Confidence            55667888999999999999999999999988773    6554  3456677788887765

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.87  E-value=0.00012  Score=59.60  Aligned_cols=190  Identities=15%  Similarity=0.185  Sum_probs=119.0

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~   81 (240)
                      |+.+...+-.|+.+++++.++||+..      .|++..++++.|++++...++.               ......|....
T Consensus        82 asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay~DN~---------------~a~e~iGi~~A  140 (290)
T KOG4314|consen   82 ASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAYADNE---------------HADEIIGIACA  140 (290)
T ss_pred             hHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEeccch---------------hhhhhhhHHHH
Confidence            56677788899999999999999874      4789999999999888632221               12346899999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH-------HHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-H
Q 026311           82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVF-------VTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-I  153 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l-------~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~  153 (240)
                      +++++.-|+|-++-|+....-. -=...-++...|..       ..+++++ ++  .. +|+.-....|..+   .|. +
T Consensus       141 V~SA~~aAlYKV~FK~~iGnAn-~Gdaa~FmS~LGF~NL~~~~~~~lIL~~-T~--VE-~~qsFA~~PWG~l---~G~A~  212 (290)
T KOG4314|consen  141 VGSAFMAALYKVLFKMFIGNAN-FGDAAHFMSCLGFFNLCFISFPALILAF-TG--VE-HLQSFAAAPWGCL---CGAAG  212 (290)
T ss_pred             HHHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHHHhhhHHHHHH-hc--hH-HHHHHhhCCchhh---hhHHH
Confidence            9999999999999998865421 11122222222211       1112221 11  11 2321000011111   122 1


Q ss_pred             HHHHH-HHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccc
Q 026311          154 NGVCQ-SFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGK  220 (240)
Q Consensus       154 t~ia~-~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~  220 (240)
                      --++| .+.+.++....|-..|+-+.....--...+.++-+-..+...+.|..+|..|.+++..+..|
T Consensus       213 L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~  280 (290)
T KOG4314|consen  213 LSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK  280 (290)
T ss_pred             HHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence            12222 24456666777777777776666666778887766678888899999999999887665433

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.87  E-value=6e-05  Score=66.00  Aligned_cols=64  Identities=17%  Similarity=0.202  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhhcCceeeeechhHHH-HHHHHHHHHHhCCC--ccc----hhhHHHHHHHHHHHHHhh
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMFSPIAT-VISVILSAITLGDS--IDI----GSLSGMFLMFAGLYYVLW  216 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~P-v~a~l~~~l~lgE~--~~~----~~iiG~~lIl~Gv~l~~~  216 (240)
                      +...-....|+++++.+++.+....+..= .++++-|.++++|.  .+.    ....|..+++.|+++...
T Consensus       222 ~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~  292 (300)
T PF05653_consen  222 TAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSS  292 (300)
T ss_pred             HHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeec
Confidence            45556666789999999998887777644 45667777788874  444    446677888899888654

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.66  E-value=0.0005  Score=61.13  Aligned_cols=140  Identities=14%  Similarity=0.096  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHH--HHHHHHHHH-HHHHhhcCCCccccc-ccCchhHHHHHHH
Q 026311           74 KIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAIT--SLIGVFVTT-VVELLQNHKLDFGWE-FVGLPETMSYIAL  149 (240)
Q Consensus        74 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~--~l~g~l~l~-~~~~~~~~~~~~~~~-~~~~~~~~~i~l~  149 (240)
                      ...|.++++++++||+.+.+-+|+ .|+++  .+.. |-  .++..++.- ..+.+..++..-... ........+  +.
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~--~l   78 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPV--FL   78 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHH--HH
Confidence            468999999999999999998887 45553  3332 32  112222111 111111222110111 111111222  23


Q ss_pred             HHHHHHHHHHHHHHHHhhcCceeeee-chhHHHHHHHHHHHHHhCCCc---c----chhhHHHHHHHHHHHHHhhccc
Q 026311          150 GGMINGVCQSFNAWAIKKRGPVFVSM-FSPIATVISVILSAITLGDSI---D----IGSLSGMFLMFAGLYYVLWAKG  219 (240)
Q Consensus       150 ~gi~t~ia~~l~~~al~~~g~~~~s~-~~~l~Pv~a~l~~~l~lgE~~---~----~~~iiG~~lIl~Gv~l~~~~~~  219 (240)
                      .|+.=.++...+..++|+.|.+++-. ..-++-+.+.+++.+++||--   +    ..-++|.+++++|+++..+...
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~  156 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ  156 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34445678889999999999986544 445678889999999999754   2    3467888999999999887443

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.66  E-value=0.001  Score=51.65  Aligned_cols=130  Identities=12%  Similarity=0.157  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHH
Q 026311           78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGV  156 (240)
Q Consensus        78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~i  156 (240)
                      .++.+.+..+-++-..+..|+.++..+++..+.+.+..|.+.+..+.++.++. +  ++...+..++.   |+|= ..++
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~-~--~~~~~~~p~w~---~lGG~lG~~   76 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP-S--LASLSSVPWWA---YLGGLLGVF   76 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc-c--cchhccCChHH---hccHHHHHH
Confidence            35666777777777778888877765689999999999999988887776553 2  11111112322   3333 5556


Q ss_pred             HHHHHHHHHhhcCceeeeechhH-HHHHHHHHHHH----HhCCCccchhhHHHHHHHHHHHH
Q 026311          157 CQSFNAWAIKKRGPVFVSMFSPI-ATVISVILSAI----TLGDSIDIGSLSGMFLMFAGLYY  213 (240)
Q Consensus       157 a~~l~~~al~~~g~~~~s~~~~l-~Pv~a~l~~~l----~lgE~~~~~~iiG~~lIl~Gv~l  213 (240)
                      .-....+.+++.|++.+...... +-+.+.+++.+    .-.+++++..++|.++++.|+++
T Consensus        77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            66677788999999877666554 66667777775    24578999999999999999863

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.49  E-value=4.8e-05  Score=56.78  Aligned_cols=43  Identities=23%  Similarity=0.499  Sum_probs=38.4

Q ss_pred             cccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhh
Q 026311            3 TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGL   51 (240)
Q Consensus         3 ~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~   51 (240)
                      +++.+++|+|+.+++++++|||+++|      +++|++++++|++++..
T Consensus        64 ~~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   64 AAIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            46778999999999999999999876      67999999999998864

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.47  E-value=0.0004  Score=51.06  Aligned_cols=66  Identities=18%  Similarity=0.270  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHhhcCceee-eechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311          153 INGVCQSFNAWAIKKRGPVFV-SMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK  218 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~-s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~  218 (240)
                      +-.++|.+...++|+++...+ +++.-+.-+...+.|++++||++++.+++|.+++++|+...+...
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            456788888899999887644 556667788889999999999999999999999999999887643

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.46  E-value=0.0013  Score=48.93  Aligned_cols=63  Identities=14%  Similarity=0.181  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHhhcCceee-eechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311          153 INGVCQSFNAWAIKKRGPVFV-SMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL  215 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~-s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~  215 (240)
                      +-+++|++...++|+.+...+ +++..+.-+...+.|++++||++++.+++|.++|+.|+...+
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            567789999999999988755 455557778889999999999999999999999999998864

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.40  E-value=0.00056  Score=50.52  Aligned_cols=64  Identities=23%  Similarity=0.277  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHhhcCceee-eechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311          153 INGVCQSFNAWAIKKRGPVFV-SMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW  216 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~-s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~  216 (240)
                      +-+++|++...++|+++...+ +++.-+.-+...+.|++++||++++.+++|.++|+.|+...+.
T Consensus        38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            567788888899998887754 4555578888999999999999999999999999999988754

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.39  E-value=0.00014  Score=61.78  Aligned_cols=134  Identities=14%  Similarity=0.161  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-H
Q 026311           75 IIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-I  153 (240)
Q Consensus        75 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~  153 (240)
                      ..|..+.-.+ ..+....++.++..+.  ||......-++.-.+...|..+..-..   -|-....--| .  +.=|+ +
T Consensus        37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~---v~gp~g~R~~-L--iLRg~mG  107 (346)
T KOG4510|consen   37 NLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQP---VIGPEGKRKW-L--ILRGFMG  107 (346)
T ss_pred             ccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeee---eecCCCcEEE-E--Eeehhhh
Confidence            4677777777 7777788888877765  355554444333222222221111110   0100000001 1  12333 2


Q ss_pred             HHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311          154 NGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK  218 (240)
Q Consensus       154 t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~  218 (240)
                      + .+..+.++++++.+-+.+.+..+..|+++++++|.+++|+.+....+|..+-+.|++++.+..
T Consensus       108 ~-tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  108 F-TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             h-hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            2 334455688999999999999999999999999999999999999999999999999987764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.37  E-value=0.0031  Score=54.21  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCceeeeech-hHHHHHHHHHHHHHhCCCccchhhH----HHHHHHHHHHHHhhcccccc
Q 026311          149 LGGMINGVCQSFNAWAIKKRGPVFVSMFS-PIATVISVILSAITLGDSIDIGSLS----GMFLMFAGLYYVLWAKGKEN  222 (240)
Q Consensus       149 ~~gi~t~ia~~l~~~al~~~g~~~~s~~~-~l~Pv~a~l~~~l~lgE~~~~~~ii----G~~lIl~Gv~l~~~~~~~~~  222 (240)
                      ..|+.=.++...++++.++.|.+++-... .++-+.+.++|++++||.-+..+.+    +.+++++|+++..+++++++
T Consensus        50 lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~  128 (269)
T PF06800_consen   50 LSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD  128 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc
Confidence            44555668899999999999999988877 4566668999999999987765544    77889999998776555444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.24  E-value=0.059  Score=48.11  Aligned_cols=198  Identities=11%  Similarity=0.053  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHhhhcc---cccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCcc-ccCCchHHHHHHHHHHHH
Q 026311           11 GLIFIIAWTFRLEKV---KLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNI-IFDREKIIGCVYLLAAVF   86 (240)
Q Consensus        11 i~t~i~a~~~~~E~l---~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~-~~~~~~~~G~~l~l~aa~   86 (240)
                      +...++..++++|.-   +-++  ...-.+|+++.++|+++.... +.. +   +++.+.. ..+.+...|.++++.+.+
T Consensus       112 v~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~A-g~~-k---~~~~~~~~~~~~~~~KGi~ialisgi  184 (345)
T PRK13499        112 IVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRA-GQL-K---ERKMGIKKAEEFNLKKGLILAVMSGI  184 (345)
T ss_pred             HHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHh-hhh-c---ccccccccccccchHhHHHHHHHHHH
Confidence            445566777777643   2222  133567999999999887531 110 0   0000000 123456789999999999


Q ss_pred             HHHHHH-------HHHHHhh-ccCCchhHHHHHHH---HHHHHHHH-HHHHh---hcCCCc--ccccccCchhHHHHH--
Q 026311           87 VLSSTV-------VLQAATL-GDFPAPMSLCAITS---LIGVFVTT-VVELL---QNHKLD--FGWEFVGLPETMSYI--  147 (240)
Q Consensus        87 ~~a~~~-------vl~~~~~-~~~~~~~~~~~~~~---l~g~l~l~-~~~~~---~~~~~~--~~~~~~~~~~~~~i~--  147 (240)
                      .+++|.       ...+... .+. ++.....-|.   +.|+...- +++..   .+++.+  .+...+....+-..+  
T Consensus       185 ~~~~f~~~~~~~~~~~~~a~~~g~-~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~  263 (345)
T PRK13499        185 FSACFSFAMDAGKPMHEAAAALGV-DPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLS  263 (345)
T ss_pred             HHHHHHHHHhhccchhhhhhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHH
Confidence            999999       4332211 122 2333333333   35554433 33332   112111  011110000011210  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCceeeee---ch-hHHHHHHHHHHHHHhCCCcc------chhhHHHHHHHHHHHHHhhc
Q 026311          148 ALGGMINGVCQSFNAWAIKKRGPVFVSM---FS-PIATVISVILSAITLGDSID------IGSLSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       148 l~~gi~t~ia~~l~~~al~~~g~~~~s~---~~-~l~Pv~a~l~~~l~lgE~~~------~~~iiG~~lIl~Gv~l~~~~  217 (240)
                      ...|+.=.+++..|..+-++.|......   +. .+.-+++.+.|. ++||.=+      ...++|.++++.|..++..+
T Consensus       264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            1222233456667778888887665444   33 566689999998 5999888      67799999999998887654

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.20  E-value=0.00041  Score=60.78  Aligned_cols=120  Identities=13%  Similarity=0.152  Sum_probs=82.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHH
Q 026311           73 EKIIGCVYLLAAVFVLSSTVVLQAATLGDFPA-PMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGG  151 (240)
Q Consensus        73 ~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~-~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g  151 (240)
                      ++..|..+.+.++++.+....++||-.+|.++ ...-.  +.        ....         ++  ...+|.++ +.  
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~~--------~~~~---------l~--~~~W~~G~-~~--   59 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--SG--------GRSY---------LR--RPLWWIGL-LL--   59 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ch--------hhHH---------Hh--hHHHHHHH-HH--
Confidence            46789999999999999999999987554321 01100  00        0011         11  11123333 11  


Q ss_pred             HHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311          152 MINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK  218 (240)
Q Consensus       152 i~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~  218 (240)
                        -+++......++...+++.++.+..+.-++..+++..++||+++..+++|.++++.|..++....
T Consensus        60 --~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   60 --MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             --HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence              22333445566778888888888889999999999999999999999999999999987765433

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.17  E-value=0.00079  Score=48.58  Aligned_cols=55  Identities=18%  Similarity=0.278  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHhhcCceee-eechhHHHHHHHHHHHHHhCCCccchhhHHHHHH
Q 026311          153 INGVCQSFNAWAIKKRGPVFV-SMFSPIATVISVILSAITLGDSIDIGSLSGMFLM  207 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~-s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lI  207 (240)
                      +-+++++++.+++|+.+.+.+ +++..+..+...+.|.+++||++++.+++|..+|
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            567889999999999999888 4556689999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.11  E-value=0.00084  Score=57.09  Aligned_cols=70  Identities=14%  Similarity=0.250  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccc
Q 026311          155 GVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYS  224 (240)
Q Consensus       155 ~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~  224 (240)
                      .+.-.+.+.++++.+|+.--+......+++.++++++++.+++..||++..+..+|+.++..+.....+.
T Consensus        28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~   97 (244)
T PF04142_consen   28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN   97 (244)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence            3455677789999999999999999999999999999999999999999999999999988766554333

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.05  E-value=0.017  Score=45.23  Aligned_cols=137  Identities=11%  Similarity=0.232  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHH
Q 026311           76 IGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMING  155 (240)
Q Consensus        76 ~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~  155 (240)
                      ...++.+.+..+-.+-+-+..|+.+...+|+....+.+..|++.+..+.++.+..+.  +....+..|+..  .-|+..+
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~--~a~~~~~pwW~~--~GG~lGa   80 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPG--LAAVASAPWWAW--IGGLLGA   80 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhccCCchHHH--Hccchhh
Confidence            456667777777777777777877766568888899999999999888887544332  221122223332  2222222


Q ss_pred             HHHHHHHHHHhhcCceee-eechhHHHHHHHHHHHHHhC----CCccchhhHHHHHHHHHHHHHhh
Q 026311          156 VCQSFNAWAIKKRGPVFV-SMFSPIATVISVILSAITLG----DSIDIGSLSGMFLMFAGLYYVLW  216 (240)
Q Consensus       156 ia~~l~~~al~~~g~~~~-s~~~~l~Pv~a~l~~~l~lg----E~~~~~~iiG~~lIl~Gv~l~~~  216 (240)
                      +--..-.....+.|++.. .....-+-+.+.+++.+=..    .++++..++|.+++++|+++..+
T Consensus        81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence            222233455677777633 33334456666766655433    57889999999999999666543

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.0038  Score=54.43  Aligned_cols=198  Identities=20%  Similarity=0.213  Sum_probs=101.1

Q ss_pred             cccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcC-CCCccccCCchHHHHHHH
Q 026311            3 TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSV-NTPNIIFDREKIIGCVYL   81 (240)
Q Consensus         3 ~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~-~~~~~~~~~~~~~G~~l~   81 (240)
                      +-+.++.-++.++++..++|||++++      -.+|+.+|++|..+++.. +|..+...+. +-.....+..+..-..+.
T Consensus        94 tPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~h-aP~e~~i~t~~el~~~~~~~~Fliy~~~i  166 (335)
T KOG2922|consen   94 TPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVIH-APKEQEIESVEEVWELATEPGFLVYVIII  166 (335)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEEe-cCcccccccHHHHHHHhcCccHHHHHHHH
Confidence            34556777888999999999999976      469999999999998854 3321110000 000000122222222222


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH-----H--HHHhhcCCCcccccccCchhHHHHHHHHHHHH
Q 026311           82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTT-----V--VELLQNHKLDFGWEFVGLPETMSYIALGGMIN  154 (240)
Q Consensus        82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~-----~--~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t  154 (240)
                      ++..+.   -....++ ++...+.+.......++|+.-..     -  +-.......+  ..  .+..|..+ +..+.+.
T Consensus       167 il~~~i---l~~~~~p-~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~q--l~--~~~ty~~~-l~~~~~~  237 (335)
T KOG2922|consen  167 ILIVLI---LIFFYAP-RYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQ--LF--YPLTWIFL-LVVATCV  237 (335)
T ss_pred             HHHHHH---Hheeecc-cccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcc--cc--cHHHHHHH-HHHHHHH
Confidence            211111   0111111 11111334343444444422100     0  0011111111  11  11122221 2222255


Q ss_pred             HHHHHHHHHHHhhcCceeeeechhHH-HHHHHHHHHHHhCCCcc--c----hhhHHHHHHHHHHHHHhh
Q 026311          155 GVCQSFNAWAIKKRGPVFVSMFSPIA-TVISVILSAITLGDSID--I----GSLSGMFLMFAGLYYVLW  216 (240)
Q Consensus       155 ~ia~~l~~~al~~~g~~~~s~~~~l~-Pv~a~l~~~l~lgE~~~--~----~~iiG~~lIl~Gv~l~~~  216 (240)
                      ..-....|+|++...++.++...|.. -.++++-|.+++.|--.  .    ..+.|...++.|+++...
T Consensus       238 ~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~  306 (335)
T KOG2922|consen  238 STQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHR  306 (335)
T ss_pred             HHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeee
Confidence            55566678999999999887777764 44567777888888443  3    456788888999887643

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=96.58  E-value=0.0012  Score=48.96  Aligned_cols=43  Identities=26%  Similarity=0.563  Sum_probs=37.6

Q ss_pred             ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311            2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMG   50 (240)
Q Consensus         2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~   50 (240)
                      ++.+.++.|+++.++++++++||++++      +++|+++.+.|++++.
T Consensus        83 ~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   83 VSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            466788999999999999999998865      6899999999998763

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.29  E-value=0.0019  Score=48.19  Aligned_cols=40  Identities=23%  Similarity=0.214  Sum_probs=35.1

Q ss_pred             cCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311            5 MPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMG   50 (240)
Q Consensus         5 i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~   50 (240)
                      +.++.|+++.++++++++||++++      |++|+.+.+.|++++.
T Consensus        69 ~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         69 MLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            345789999999999999999876      6899999999998764

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.92  E-value=0.0035  Score=55.68  Aligned_cols=79  Identities=20%  Similarity=0.260  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccCCCCCcc
Q 026311          154 NGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESD  233 (240)
Q Consensus       154 t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~  233 (240)
                      =.+|-+.++.+++....+...+.....-+|+..+|.++.+|++++...++.++-+.|++++++++.++       .++.+
T Consensus       169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~-------~~~~~  241 (416)
T KOG2765|consen  169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ-------NSDLP  241 (416)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc-------cccCC
Confidence            34677889999999999999999999999999999999999999999999999999999988776544       33445


Q ss_pred             cCCCCC
Q 026311          234 AENPLL  239 (240)
Q Consensus       234 ~~~~~~  239 (240)
                      |++|++
T Consensus       242 a~~~ll  247 (416)
T KOG2765|consen  242 ASRPLL  247 (416)
T ss_pred             ccchhH
Confidence            566653

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.80  E-value=0.0071  Score=51.00  Aligned_cols=129  Identities=12%  Similarity=0.129  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHH
Q 026311           77 GCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGV  156 (240)
Q Consensus        77 G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~i  156 (240)
                      ..++.++-++.|+..-....|...   +|.+- ...+.+|++.....-+++..+.. .++    ....++  ..|.-=.+
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ-~lGtT~GALifaiiv~~~~~p~~-T~~----~~iv~~--isG~~Ws~   71 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG---KPYQQ-TLGTTLGALIFAIIVFLFVSPEL-TLT----IFIVGF--ISGAFWSF   71 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC---ChhHh-hhhccHHHHHHHHHHheeecCcc-chh----hHHHHH--HhhhHhhh
Confidence            356778888999987666544322   23433 33445666555544443322211 222    112221  23333346


Q ss_pred             HHHHHHHHHhhcCceeeeechh-HHHHHHHHHHHHHhCCCccchhhH----HHHHHHHHHHHHhh
Q 026311          157 CQSFNAWAIKKRGPVFVSMFSP-IATVISVILSAITLGDSIDIGSLS----GMFLMFAGLYYVLW  216 (240)
Q Consensus       157 a~~l~~~al~~~g~~~~s~~~~-l~Pv~a~l~~~l~lgE~~~~~~ii----G~~lIl~Gv~l~~~  216 (240)
                      ++..++++++..|.+++..... .+-+-+.++|++.+||--+..+++    +.++++.|+++..+
T Consensus        72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~  136 (288)
T COG4975          72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSK  136 (288)
T ss_pred             hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeee
Confidence            7888999999999999887765 467778999999999999887753    45778888877544

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.38  E-value=0.04  Score=48.74  Aligned_cols=76  Identities=20%  Similarity=0.253  Sum_probs=61.8

Q ss_pred             HHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccCCCCCcccCCCC
Q 026311          159 SFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAENPL  238 (240)
Q Consensus       159 ~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~  238 (240)
                      .+++.+..+.+|+.-.+...+-.+.+.++..++++++++..||...++...|+.++..+.....+    +.++++++||.
T Consensus       107 nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~----a~~~~~~~n~~  182 (345)
T KOG2234|consen  107 NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG----AKSESSAQNPF  182 (345)
T ss_pred             hHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC----ccCCCcccchh
Confidence            47778899999999999999999999999999999999999999999999999998743332222    22255556664

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=94.79  E-value=0.089  Score=39.28  Aligned_cols=108  Identities=12%  Similarity=0.117  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 026311           83 AAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNA  162 (240)
Q Consensus        83 ~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~  162 (240)
                      +-+++|++-+-+.||-.+..++ ..-.. |.......     ++.      .|+.     +...+     ....+-.+|+
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~-~~~~~-~~~~~~~~-----Ll~------n~~y-----~ipf~-----lNq~GSv~f~   59 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEK-VKASL-QLLQEIKF-----LLL------NPKY-----IIPFL-----LNQSGSVLFF   59 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCC-ccchH-HHHHHHHH-----HHH------hHHH-----HHHHH-----HHHHHHHHHH
Confidence            3467899888888887765432 21111 32222111     111      2331     11111     2334556777


Q ss_pred             HHHhhcCceeeeec-hhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHH
Q 026311          163 WAIKKRGPVFVSMF-SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYY  213 (240)
Q Consensus       163 ~al~~~g~~~~s~~-~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l  213 (240)
                      +.+++.+-+.+... +.+.=+++++.++++.+|..+...++|+++++.|+.+
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            88999999988888 5889999999998877777788899999999999864

Many members are annotated as potential transmembrane proteins.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=94.32  E-value=0.0041  Score=52.36  Aligned_cols=133  Identities=21%  Similarity=0.207  Sum_probs=84.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHH
Q 026311           71 DREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALG  150 (240)
Q Consensus        71 ~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~  150 (240)
                      .++...|...++.+.+.|-.|.++.+...-+--+.+--.+..|..+++.+   ...-++...-..      .+..+  ..
T Consensus       147 ~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~---~~~~~~~~~~K~------t~~ni--i~  215 (288)
T COG4975         147 PSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALIL---GFFKMEKRFNKY------TWLNI--IP  215 (288)
T ss_pred             hHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHH---hhcccccchHHH------HHHHH--hh
Confidence            34556899999999999999999866543211123334455555554443   222111111011      12221  23


Q ss_pred             HHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchh----hHHHHHHHHHHHHH
Q 026311          151 GMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGS----LSGMFLMFAGLYYV  214 (240)
Q Consensus       151 gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~----iiG~~lIl~Gv~l~  214 (240)
                      |+.=+++-..+..+.++.|....=.++-+.-+++.+-|.++++|+-|..+    ++|.++++.|..+.
T Consensus       216 G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l  283 (288)
T COG4975         216 GLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL  283 (288)
T ss_pred             HHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence            33234566667778889998888888889999999999999999999765    56777777775543

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=94.16  E-value=0.44  Score=42.24  Aligned_cols=143  Identities=14%  Similarity=0.084  Sum_probs=80.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHH-HHHHHHHHHHHHHHHH--HhhcCCCcccccccCchhHHHHHHH
Q 026311           73 EKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSL-CAITSLIGVFVTTVVE--LLQNHKLDFGWEFVGLPETMSYIAL  149 (240)
Q Consensus        73 ~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~-~~~~~l~g~l~l~~~~--~~~~~~~~~~~~~~~~~~~~~i~l~  149 (240)
                      +-..|.++..++++|-+.+-+=.||. |+++  .+. =..|.+++-+. +|..  .+.-++..--....+...+... .+
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli-~P~~~a~l~ip~~~~i~~~~~~~~l~~~-~l   78 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLI-VPWLWALLAIPDFFSIYSATPASTLFWT-FL   78 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHH-HHHHHHHHhCCcHHHHHHhCChhHHHHH-HH
Confidence            34689999999999999988877774 4553  322 22355555443 3332  2222222101111111122222 22


Q ss_pred             HHHHHHHHHHHHHHHHhhcCcee-eeechhHHHHHHHHHHHHHhCC-------CccchhhHHHHHHHHHHHHHhhcccc
Q 026311          150 GGMINGVCQSFNAWAIKKRGPVF-VSMFSPIATVISVILSAITLGD-------SIDIGSLSGMFLMFAGLYYVLWAKGK  220 (240)
Q Consensus       150 ~gi~t~ia~~l~~~al~~~g~~~-~s~~~~l~Pv~a~l~~~l~lgE-------~~~~~~iiG~~lIl~Gv~l~~~~~~~  220 (240)
                      .|+-=+++-..|-.++|++|-+. .++..-+.-+++.++--++.|+       +-....++|.++.++|+.+.-+...+
T Consensus        79 ~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~  157 (344)
T PF06379_consen   79 FGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM  157 (344)
T ss_pred             HHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence            33323345556678889998863 3444555566666665555432       23457789999999999998765443

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=93.57  E-value=0.045  Score=48.22  Aligned_cols=123  Identities=17%  Similarity=0.242  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHH
Q 026311           75 IIGCVYLLAAVFVLSST-VVLQAATLG--DFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGG  151 (240)
Q Consensus        75 ~~G~~l~l~aa~~~a~~-~vl~~~~~~--~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g  151 (240)
                      ..++......-.+-+++ +++.|...+  +.+.|..+|..+...+.+.+...-.+-..+.. ...  ....+..+ +-+|
T Consensus        15 ~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~-~~~--~~~~~~~l-lpl~   90 (316)
T KOG1441|consen   15 ILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS-KIS--SKLPLRTL-LPLG   90 (316)
T ss_pred             hHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC-ccc--cccchHHH-HHHH
Confidence            34444433333333332 334555556  45567888888777777776655544222221 111  11223343 4555


Q ss_pred             HHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhh
Q 026311          152 MINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSL  201 (240)
Q Consensus       152 i~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~i  201 (240)
                      +...++..+=+.++++.+.+..-+...++|++.+++++++.+|+.+....
T Consensus        91 ~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~  140 (316)
T KOG1441|consen   91 LVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTY  140 (316)
T ss_pred             HHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEE
Confidence            55667777888999999999999999999999999999999999887443

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.35  E-value=0.35  Score=40.83  Aligned_cols=129  Identities=8%  Similarity=0.038  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHhhcc-CC--c--------hhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH--
Q 026311           86 FVLSSTVVLQAATLGD-FP--A--------PMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM--  152 (240)
Q Consensus        86 ~~~a~~~vl~~~~~~~-~~--~--------~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi--  152 (240)
                      +||=.|-+.|.|..+. |.  +        .+.+...||..-.+..=++..+.... .++-. +  . +    .|.+-  
T Consensus        23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~-~~D~t-~--~-~----~YaAcs~   93 (337)
T KOG1580|consen   23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKT-EIDNT-P--T-K----MYAACSA   93 (337)
T ss_pred             heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccc-cccCC-c--c-h----HHHHHHH
Confidence            6788888888887643 32  1        24455667766655543332222211 00111 0  0 1    23322  


Q ss_pred             HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccc
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENY  223 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~  223 (240)
                      .-.++..--|.++|..+=-..-+-..--|+=-+++|+++.+.+-+|....=..+|+.|+.+..++++|...
T Consensus        94 sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g  164 (337)
T KOG1580|consen   94 SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG  164 (337)
T ss_pred             HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence            22344445567777776555555666778888999999999999999999999999999999987665443

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=91.55  E-value=0.071  Score=43.72  Aligned_cols=61  Identities=21%  Similarity=0.223  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311          157 CQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA  217 (240)
Q Consensus       157 a~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~  217 (240)
                      +-++|..++++++|+.++...--.-.+..+++++.+|+++....++..++.+.|+.++.+.
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~  126 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA  126 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence            5668889999999999999999999999999999999999999999999999998776543

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=89.41  E-value=1.2  Score=39.12  Aligned_cols=69  Identities=10%  Similarity=0.205  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311          151 GMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG  219 (240)
Q Consensus       151 gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~  219 (240)
                      |++|++--.+=||+++...-+.-++...-.+++-.++|.++-=|+++|....-..+|.+|+++..+++.
T Consensus        91 alata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT  159 (349)
T KOG1443|consen   91 ALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST  159 (349)
T ss_pred             hhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence            346777788899999999999999999999999999999999999999999999999999988877543

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=88.91  E-value=0.41  Score=35.07  Aligned_cols=30  Identities=17%  Similarity=0.459  Sum_probs=26.5

Q ss_pred             HHHHHHHhCCCccchhhHHHHHHHHHHHHH
Q 026311          185 VILSAITLGDSIDIGSLSGMFLMFAGLYYV  214 (240)
Q Consensus       185 ~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~  214 (240)
                      +.++++++||+++|.++.|.++++.+++.+
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            566788999999999999999999998764

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.61  E-value=0.053  Score=47.45  Aligned_cols=122  Identities=15%  Similarity=0.130  Sum_probs=75.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH
Q 026311           73 EKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM  152 (240)
Q Consensus        73 ~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi  152 (240)
                      ++..|..+.+.+.+..+...++.|+-.+|.. .      +..-          .-+++..  +- ..+.+|.++ +-.++
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~------~~~r----------a~~gg~~--yl-~~~~Ww~G~-ltm~v   76 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A------SGLR----------AGEGGYG--YL-KEPLWWAGM-LTMIV   76 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHHHh-h------hccc----------ccCCCcc--hh-hhHHHHHHH-HHHHH
Confidence            3456777777777777777777665544321 0      0000          0011111  11 112234443 33333


Q ss_pred             HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG  219 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~  219 (240)
                      +-..-|.    +..-.+++.++....+.-++.++++..+++|++++...+|+++.++|-.+......
T Consensus        77 Gei~NFa----AYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP  139 (335)
T KOG2922|consen   77 GEIANFA----AYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAP  139 (335)
T ss_pred             HhHhhHH----HHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecC
Confidence            3333333    33556888899999999999999999999999999999999999999666544333

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=87.94  E-value=0.27  Score=37.64  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=29.0

Q ss_pred             cchHHHHHHHHHH--HhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311            7 NLAPGLIFIIAWT--FRLEKVKLSCLYSKVKILGTLLCVVGAVTMG   50 (240)
Q Consensus         7 ~~~Pi~t~i~a~~--~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~   50 (240)
                      +..+.++.+.++.  +++|+++++      |++|+.+-++|++++.
T Consensus        82 sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         82 SLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            3445555556653  789999876      6899999999998875

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=87.43  E-value=2.3  Score=36.41  Aligned_cols=47  Identities=17%  Similarity=0.063  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHh
Q 026311           78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELL  126 (240)
Q Consensus        78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~  126 (240)
                      .+-++.|+++++...+=.||....  |++....+++...-+......++
T Consensus         2 ~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~   48 (254)
T PF07857_consen    2 YIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLI   48 (254)
T ss_pred             chhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHh
Confidence            345677888888777666654322  67766555554433333333333

The region concerned is approximately 280 residues long.

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.35  E-value=1.5  Score=31.74  Aligned_cols=33  Identities=18%  Similarity=0.396  Sum_probs=29.1

Q ss_pred             HHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311          184 SVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW  216 (240)
Q Consensus       184 a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~  216 (240)
                      -+.++++.++|++.|.++.|.+++..|++.+-+
T Consensus        83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            466889999999999999999999999987643

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=87.24  E-value=0.54  Score=35.52  Aligned_cols=34  Identities=26%  Similarity=0.231  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311           11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMG   50 (240)
Q Consensus        11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~   50 (240)
                      +.+.++++++++|+++++      |++|+.+-+.|++.+-
T Consensus        69 v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         69 LFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            456778899999999876      6899999999998774

>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]

Probab=86.38  E-value=3.1  Score=33.03  Aligned_cols=93  Identities=25%  Similarity=0.305  Sum_probs=58.3

Q ss_pred             HHHHHHHHH-hhhcccccccCCcchhhhHHH-------hhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHH
Q 026311           12 LIFIIAWTF-RLEKVKLSCLYSKVKILGTLL-------CVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLA   83 (240)
Q Consensus        12 ~t~i~a~~~-~~E~l~~~~~~~~~~~~Gi~l-------~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~   83 (240)
                      |..+++... +.|-+-+|..|...+.+|+.+       +..|+.++....                 +.++.......+.
T Consensus        77 fIlVIAv~VQf~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~-----------------~~~f~qsv~~gf~  139 (193)
T COG4657          77 FILVIAVVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINE-----------------GHNFLQSVVYGFG  139 (193)
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhh-----------------hhhHHHHHHHHhh
Confidence            445555554 567777777788888888775       566777664321                 2234556777778


Q ss_pred             HHHHHHHHHHHHHHhhcc-----CCchhHHHHHHHHHHHHHHH
Q 026311           84 AVFVLSSTVVLQAATLGD-----FPAPMSLCAITSLIGVFVTT  121 (240)
Q Consensus        84 aa~~~a~~~vl~~~~~~~-----~~~~~~~~~~~~l~g~l~l~  121 (240)
                      +++.|++-.++....++|     .|.|+.-+.+.+..++++.+
T Consensus       140 a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSl  182 (193)
T COG4657         140 AALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSL  182 (193)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHH
Confidence            888888877776555543     34555555556555555443

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=86.31  E-value=0.64  Score=34.28  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311           11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMG   50 (240)
Q Consensus        11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~   50 (240)
                      +.+.+.++++++|+++.+      |++|+.+-+.|++.+-
T Consensus        69 v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          69 VGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            456778899999999865      7899999999998763

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=85.48  E-value=0.63  Score=35.24  Aligned_cols=38  Identities=21%  Similarity=0.347  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHhhccccccccccCC-CCCcccCCCCC
Q 026311          202 SGMFLMFAGLYYVLWAKGKENYSNIGS-ESESDAENPLL  239 (240)
Q Consensus       202 iG~~lIl~Gv~l~~~~~~~~~~~~~~~-~~~~~~~~~~~  239 (240)
                      .|.+++++.++...++++|+.+...+. .+|.|.+.||-
T Consensus        75 aGvIg~Illi~y~irR~~Kk~~~~~~p~P~~~d~~~p~~  113 (122)
T PF01102_consen   75 AGVIGIILLISYCIRRLRKKSSSDVQPLPEEDDTDVPLS  113 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHS---------------------
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcc
Confidence            444445554444444444444333333 44557777763

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PRK02237 hypothetical protein; Provisional

Probab=85.41  E-value=1.5  Score=32.32  Aligned_cols=38  Identities=16%  Similarity=0.149  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311          182 VISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG  219 (240)
Q Consensus       182 v~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~  219 (240)
                      +.+.+.++.+-|++++...++|+++.++|+.++.+.+|
T Consensus        71 ~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         71 AGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            35667788888999999999999999999988876654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=85.38  E-value=0.78  Score=34.08  Aligned_cols=34  Identities=26%  Similarity=0.606  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311           11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMG   50 (240)
Q Consensus        11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~   50 (240)
                      +.+.+.++++++|++++.      |++|+.+-+.|++.+-
T Consensus        69 v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         69 VLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            345778899999999875      6899999999998874

>PRK11431 multidrug efflux system protein; Provisional

Probab=85.20  E-value=0.8  Score=33.72  Aligned_cols=33  Identities=18%  Similarity=0.141  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhh
Q 026311           11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTM   49 (240)
Q Consensus        11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l   49 (240)
                      +.+.+.++++++|++++.      |++|+.+-+.|++.+
T Consensus        68 v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l  100 (105)
T PRK11431         68 VGAAITGIVLLGESASPA------RLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence            456778899999999875      689999999999876

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=85.20  E-value=0.78  Score=34.03  Aligned_cols=33  Identities=15%  Similarity=0.356  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhh
Q 026311           11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTM   49 (240)
Q Consensus        11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l   49 (240)
                      +.+.+.++++++|+++++      |++|+.+-+.|++.+
T Consensus        74 v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         74 AATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            345678888899998875      689999999999765

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=82.68  E-value=1.8  Score=31.81  Aligned_cols=38  Identities=21%  Similarity=0.231  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311          182 VISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG  219 (240)
Q Consensus       182 v~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~  219 (240)
                      +.+.+.++.+-|++++...++|+++.++|+.++.+.+|
T Consensus        69 ~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   69 VASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            35667788888999999999999999999998877654

; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.27
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.84
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	95.72
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	95.6

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.27  E-value=4.7e-12  Score=97.04  Aligned_cols=67  Identities=18%  Similarity=0.167  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHhhcCceeeeec-hhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMF-SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG  219 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~-~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~  219 (240)
                      +++++|++|++++|+.+++.+..+ .++.|++++++|++++||++++.+++|.++|++|++++++.++
T Consensus        39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~  106 (137)
T 2i68_A           39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR  106 (137)
T ss_dssp             HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            788999999999999999999888 8999999999999999999999999999999999999887543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.84  E-value=7.3e-09  Score=76.32  Aligned_cols=66  Identities=18%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHhhcCceeeeec-hhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311          153 INGVCQSFNAWAIKKRGPVFVSMF-SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK  218 (240)
Q Consensus       153 ~t~ia~~l~~~al~~~g~~~~s~~-~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~  218 (240)
                      +.+++|++|.+++|+.+.+.+... ..+.|+.+.+.|++++||++++.+++|.++|+.|++..+..+
T Consensus        39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            778999999999999999999887 799999999999999999999999999999999999987643

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=95.72  E-value=0.0032  Score=47.70  Aligned_cols=40  Identities=25%  Similarity=0.548  Sum_probs=30.8

Q ss_pred             CcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhh
Q 026311            6 PNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGL   51 (240)
Q Consensus         6 ~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~   51 (240)
                      .++.|++++++++++++|+++++      +++|+.+.+.|++++..
T Consensus        64 ~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           64 SGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            57889999999999999999876      68999999999998864

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=95.60  E-value=0.0051  Score=44.65  Aligned_cols=40  Identities=25%  Similarity=0.548  Sum_probs=35.5

Q ss_pred             CcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhh
Q 026311            6 PNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGL   51 (240)
Q Consensus         6 ~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~   51 (240)
                      ..+.|+++.++++++++|+++++      |++|+.+-+.|++++..
T Consensus        64 ~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           64 SGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            57889999999999999999875      68999999999988753

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00