Citrus Sinensis ID: 026326

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MESGKKEEAGPSRGVVNAEEKKDKQREMKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKSR
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccccEEEEEEEEEEcccccccccccccccccccEEEEEccccEEEEEEEEEEccEEEcccEEEEEEEEEcEEEccccccccccccccccEEEEccccccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHccccccHHHHHHHHHHccccccccccHHccccccccccccccccHHHHHHcccccHHHHHHHHHHccccccccccccccEEEEEEEEEEEccccccEEEccccHHHHHHcEEEEEcccEEEEEEEEEEccccEEEEEEEEEEEEccEEEEEEEEEEEEEccEEEEEEEEcccEEccccHHHcEEEEEEEEEEcccccEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mesgkkeeagpsrgvvnaeekkdkqremktekpltiSEVLladeeeeeeyddedvkegdgvvagfspgplvslkeqiekdkdddSLRRWKEKLLGCvegdlngqmepevkfhsigiisddfgeittplpidknqnghvLFTLKEGSRFQLKLTFNVMHNIVSGLTYSntvwkaglqvdqskgmlgtfapqrepyvhtleeettpsgvlarglysaklkfedddrrchmELNYSFEIKKSR
Flexible Loop (DISEMBL)
mesgkkeeagpsrgvvnaeekkdkqremktekpltisevlladeeeeeeyddedvkegdgvvagfspgplvslkeqiekdkdddslRRWKEKLLGcvegdlngqmePEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTleeettpsgvlarGLYSAKLkfedddrrcHMELnysfeikksr
Low Complexity Region (SEG)
MESGKKEEAGPSRGVVNAEEKKDKQREMKTEKPLTISevlladeeeeeeyddedvkegdgvvaGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKSR
Disordered region (IsUnstruct)
***************************************************************************************RWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTL******SGVLARGLYSAKLKFEDDDRRCHMELNY********
Disordered Region (DISOPRED)
***********************************************************************SLKEQIEKDKDDDSLRRWKEKLLGCVE*****QMEPEVKFHSIGIISDDFGEITTPL*****QNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKS*
Disordered Region (DISEMBL)
******************************EKPLTISEVLLADE***********KEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKSR
Disordered Region (DISPRO)
**************************************************************AGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESGKKEEAGPSRGVVNAEEKKDKQREMKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q9SFC6	240	Rho GDP-dissociation inhi	yes	no	0.795	0.795	0.519	1e-51
Q95UQ1	197	Putative rho GDP-dissocia	yes	no	0.741	0.903	0.371	3e-25
Q61599	200	Rho GDP-dissociation inhi	yes	no	0.791	0.95	0.363	3e-23
P19803	204	Rho GDP-dissociation inhi	yes	no	0.8	0.941	0.319	4e-23
Q9TU03	200	Rho GDP-dissociation inhi	no	no	0.795	0.955	0.363	1e-22
Q4R4J0	204	Rho GDP-dissociation inhi	N/A	no	0.8	0.941	0.315	1e-22
P52565	204	Rho GDP-dissociation inhi	yes	no	0.8	0.941	0.315	1e-22
Q5XI73	204	Rho GDP-dissociation inhi	no	no	0.8	0.941	0.315	1e-22
Q99PT1	204	Rho GDP-dissociation inhi	no	no	0.8	0.941	0.315	1e-22
O14224	205	Rho GDP-dissociation inhi	yes	no	0.704	0.824	0.338	6e-22

>sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/204 (51%), Positives = 144/204 (70%), Gaps = 13/204 (6%)

Query: 36  ISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG 95
           +SE  L   EEEE   D+D K           GP  ++KE +EKDKDD+SLR+WKE+LLG
Sbjct: 44  MSESSLCATEEEE---DDDSK--------LQLGPQYTIKEHLEKDKDDESLRKWKEQLLG 92

Query: 96  CVE-GDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTF 154
            V+  ++   ++PEV+  S+ IIS    +I   +P + N  G + FTLKEGS++ LK TF
Sbjct: 93  SVDVTNIGETLDPEVRIDSLAIISPGRPDIVLLVPENGNPKG-MWFTLKEGSKYNLKFTF 151

Query: 155 NVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYS 214
           +V +NIVSGL Y+NTVWK G++VD++K MLGTF+PQ EPY H + EETTPSG+ ARG YS
Sbjct: 152 HVNNNIVSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYS 211

Query: 215 AKLKFEDDDRRCHMELNYSFEIKK 238
           A+ KF DDD +C++E+NYSF+I+K
Sbjct: 212 ARTKFLDDDNKCYLEINYSFDIRK 235

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Arabidopsis thaliana (taxid: 3702)

>sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium discoideum GN=rdiA PE=1 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 16/194 (8%)

Query: 54  DVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGC-VEGDLNGQMEPEVKFH 112
           D  E +  V  + PG  VS+ +  ++D +D++L+R+KE LLG  V    +   +  +K  
Sbjct: 3   DNHEEESNVPAYVPGKHVSVDQLKQQDAEDEALKRYKESLLGTGVHAPKDDPRKLVIKEM 62

Query: 113 SIGIISDDFGEITTPLPIDKNQNGHVL----FTLKEGSRFQLKLTFNVMHNIVSGLTYSN 168
            I I     G   T  P+D  +    +    F LKE   +++ LTFN+ H+IVSGL  +N
Sbjct: 63  KIQI----EGRPDTIYPLDTKELIKEMKTKPFVLKESCHYKITLTFNIQHDIVSGLKQTN 118

Query: 169 TVWKAGLQVDQSKGMLGTFAPQREPYVHTLEE-----ETTPSGVLARGLYSAKLKFEDDD 223
           TV++ G++V   K MLG+FAPQ     H++       E  PSG+LARG Y+AK+ F DDD
Sbjct: 119 TVYRKGIKVSTEKHMLGSFAPQ--ALAHSVTNPRHGWEEAPSGMLARGSYTAKVVFTDDD 176

Query: 224 RRCHMELNYSFEIK 237
              H+ + Y+F IK
Sbjct: 177 NEEHLSVEYAFSIK 190

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them (By similarity). Regulates the Rac-dependent signaling pathways controlling cytokinesis, actin reorganization and the contractile vacuole. Required for efficient accumulation of cap at the cell cortex.

Dictyostelium discoideum (taxid: 44689)

>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1 SV=3

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 104/198 (52%), Gaps = 8/198 (4%)

Query: 42  ADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDL 101
           A  + EE  DD D K        + P P  SLKE  E DKDD+SL ++K+ LLG V    
Sbjct: 6   AQPQLEEADDDLDSK------LNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVA 59

Query: 102 NGQMEPEVKFHSIGIISDDF-GEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNI 160
           +  + P V    + ++ D   G IT  L  D        F LKEG  +++K+ F V  +I
Sbjct: 60  DPTV-PNVTVTRLSLVCDSAPGPITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDI 118

Query: 161 VSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFE 220
           VSGL Y    ++ G++VD++  M+G++ P+ E Y      E  P G+LARG Y  K  F 
Sbjct: 119 VSGLKYVQHTYRTGMRVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT 178

Query: 221 DDDRRCHMELNYSFEIKK 238
           DDD++ H+   ++  IKK
Sbjct: 179 DDDKQDHLTWEWNLAIKK 196

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3

 Score =  108 bits (269), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 27/219 (12%)

Query: 28  MKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLR 87
           M  ++P       +A E EE+E+              + P    S++E  E DKDD+SLR
Sbjct: 1   MAEQEPTAEQLAQIAAENEEDEHS-----------VNYKPPAQKSIQEIQELDKDDESLR 49

Query: 88  RWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------L 139
           ++KE LLG   V  D N    P V    + ++       T P P++ +  G +       
Sbjct: 50  KYKEALLGRVAVSADPNV---PNVVVTRLTLVCS-----TAPGPLELDLTGDLESFKKQS 101

Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+++D++  M+G++ P+ E Y     
Sbjct: 102 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 161

Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG Y+ K +F DDDR  H+   ++  IKK
Sbjct: 162 MEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKK 200

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 105/198 (53%), Gaps = 7/198 (3%)

Query: 44  EEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG--CVEGDL 101
           E+  E + +ED  E DG +  + P P  SLKE  E DKDD+SL ++K+ LLG   V  D 
Sbjct: 3   EKAPEPHVEEDDDELDGKL-NYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADP 61

Query: 102 NGQMEPEVKFHSIGIISDDF-GEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNI 160
                P V    + ++ +   G IT  L  D        F LKEG  +++K+ F V  +I
Sbjct: 62  TA---PNVTVTRLTLVCESAPGPITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDI 118

Query: 161 VSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFE 220
           VSGL Y    ++ G++VD++  M+G++ P+ E Y      E  P G+LARG Y  K  F 
Sbjct: 119 VSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKSFFT 178

Query: 221 DDDRRCHMELNYSFEIKK 238
           DDD+  H+   ++  IKK
Sbjct: 179 DDDKHDHLTWEWNLSIKK 196

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 27/219 (12%)

Query: 28  MKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLR 87
           M  ++P       +A E EE+E+              + P    S++E  E DKDD+SLR
Sbjct: 1   MAEQEPTAEQLAQIAAENEEDEHS-----------VNYKPPAQKSIQEIQELDKDDESLR 49

Query: 88  RWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------L 139
           ++KE LLG   V  D N    P V    + ++       + P P++ +  G +       
Sbjct: 50  KYKEALLGRVAVSADPNV---PNVVVTGLTLVCS-----SAPGPLELDLTGDLESFKKQS 101

Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+++D++  M+G++ P+ E Y     
Sbjct: 102 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 161

Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 162 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 200

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Macaca fascicularis (taxid: 9541)

>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 27/219 (12%)

Query: 28  MKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLR 87
           M  ++P       +A E EE+E+              + P    S++E  E DKDD+SLR
Sbjct: 1   MAEQEPTAEQLAQIAAENEEDEHS-----------VNYKPPAQKSIQEIQELDKDDESLR 49

Query: 88  RWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------L 139
           ++KE LLG   V  D N    P V    + ++       + P P++ +  G +       
Sbjct: 50  KYKEALLGRVAVSADPNV---PNVVVTGLTLVCS-----SAPGPLELDLTGDLESFKKQS 101

Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+++D++  M+G++ P+ E Y     
Sbjct: 102 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 161

Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 162 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 200

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia PE=1 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 27/219 (12%)

Query: 28  MKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLR 87
           M  ++P       +A E EE+E+              + P    S++E  E DKDD+SLR
Sbjct: 1   MAEQEPTAEQLAQIAAENEEDEHS-----------VNYKPPAQKSIQEIQELDKDDESLR 49

Query: 88  RWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------L 139
           ++KE LLG   V  D N    P V    + ++       T P P++ +  G +       
Sbjct: 50  KYKEALLGRVAVSADPNV---PNVIVTRLTLVCS-----TAPGPLELDLTGDLESFKKQS 101

Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+++D++  M+G++ P+ E Y     
Sbjct: 102 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 161

Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG Y+ K +F DDD+  H+   ++  IKK
Sbjct: 162 MEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTIKK 200

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1 SV=3

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 27/219 (12%)

Query: 28  MKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLR 87
           M  ++P       +A E EE+E+              + P    S++E  E DKDD+SLR
Sbjct: 1   MAEQEPTAEQLAQIAAENEEDEHS-----------VNYKPPAQKSIQEIQELDKDDESLR 49

Query: 88  RWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------L 139
           ++KE LLG   V  D N    P V    + ++       T P P++ +  G +       
Sbjct: 50  KYKEALLGRVAVSADPNV---PNVIVTRLTLVCS-----TAPGPLELDLTGDLESFKKQS 101

Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+++D++  M+G++ P+ E Y     
Sbjct: 102 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 161

Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG Y+ K +F DDD+  H+   ++  IKK
Sbjct: 162 MEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTIKK 200

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|O14224|GDIR_SCHPO Rho GDP-dissociation inhibitor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F12.06 PE=1 SV=1

 Score =  104 bits (259), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 95/189 (50%), Gaps = 20/189 (10%)

Query: 65  FSPGPLVSLKEQ------IEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIIS 118
           F  GP VSL E+      ++ D +D+SL++WK  L     G         V    + ++ 
Sbjct: 21  FEHGPPVSLGEKKSLNEYMKMDAEDESLQKWKASLGITGTGYSPSNDRRTVVILKLSLLV 80

Query: 119 DDFGEITTPLPIDKNQNGHVL--------FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTV 170
           D         P+D N              FT+KEGS F++ + F V H ++SGL Y  TV
Sbjct: 81  DGRD------PVDVNMEDAASVEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQTV 134

Query: 171 WKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMEL 230
            + G  VD++  M+G++ P   PY  T E +  P+G+LARG Y A  KF DDD+  H E 
Sbjct: 135 RRRGFVVDKTSTMIGSYGPSETPYDFTSEPDEAPTGMLARGHYEANGKFVDDDKVVHHEF 194

Query: 231 NYSFEIKKS 239
            ++F++ KS
Sbjct: 195 VWAFDVAKS 203

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
118488533	235	unknown [Populus trichocarpa]	0.979	1.0	0.725	6e-93
224070156	251	predicted protein [Populus trichocarpa]	0.979	0.936	0.679	7e-90
449468580	214	PREDICTED: rho GDP-dissociation inhibito	0.879	0.985	0.668	1e-83
255571248	244	Rho GDP-dissociation inhibitor, putative	0.983	0.967	0.704	6e-83
356572280	233	PREDICTED: rho GDP-dissociation inhibito	0.941	0.969	0.674	2e-82
7228160	226	putative Rho GDP dissociation inhibitor	0.933	0.991	0.643	5e-82
449515780	214	PREDICTED: rho GDP-dissociation inhibito	0.733	0.822	0.795	1e-81
40241231	219	Rho GDP dissociation inhibitor 1 [Medica	0.891	0.977	0.646	3e-81
356537138	235	PREDICTED: rho GDP-dissociation inhibito	0.725	0.740	0.793	9e-81
217075212	231	unknown [Medicago truncatula] gi|3885207	0.891	0.926	0.641	1e-80

>gi|118488533|gb|ABK96079.1| unknown [Populus trichocarpa]

 Score =  346 bits (887), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 174/240 (72%), Positives = 199/240 (82%), Gaps = 5/240 (2%)

Query: 1   MESGKKEEAGPSRGVVNAEEKKDKQREMKTEKPLTISEVLLADEEEEEEYDDEDVKEGDG 60
           MESGKK EAGPS       ++K +++   +E P  ++  +  DEE++ +  D  V     
Sbjct: 1   MESGKKAEAGPSTTTRGGFDEKLERKRETSETPPAVAAAIDDDEEDDGDAVDNGVP---- 56

Query: 61  VVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDD 120
            VAGF PGPL+SLKEQIEKDK+DDSLRRWKEKLLGCVE DLNGQ+EPEVKFHSIGIISDD
Sbjct: 57  -VAGFVPGPLLSLKEQIEKDKEDDSLRRWKEKLLGCVESDLNGQLEPEVKFHSIGIISDD 115

Query: 121 FGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQS 180
            GEI TPLP+D++Q+GH LF L+EGSR+QLKLTF+V+HNIVSGL YSNTVWK G+QVDQS
Sbjct: 116 IGEINTPLPVDESQSGHPLFALREGSRYQLKLTFSVLHNIVSGLAYSNTVWKGGIQVDQS 175

Query: 181 KGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKSR 240
           KGMLGTFAPQREPYVHTLEE+TTPSGVLARG YSAKLKFEDDDRRCHMEL YSFEIKK R
Sbjct: 176 KGMLGTFAPQREPYVHTLEEDTTPSGVLARGTYSAKLKFEDDDRRCHMELKYSFEIKKRR 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070156|ref|XP_002303123.1| predicted protein [Populus trichocarpa] gi|222844849|gb|EEE82396.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (860), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 174/256 (67%), Positives = 199/256 (77%), Gaps = 21/256 (8%)

Query: 1   MESGKKEEAGPSRGVVNAEEKKDKQREMKTEKPLTISEVLLADEEEEEEYDDEDVKEGDG 60
           MESGKK EAGPS       ++K +++   +E P  ++  +  DEE++ +  D  V     
Sbjct: 1   MESGKKAEAGPSTTTRGGFDEKLERKRETSETPPAVAAAIDDDEEDDGDAVDNGVP---- 56

Query: 61  VVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDD 120
            VAGF PGPL+SLKEQIEKDK+DDSLRRWKEKLLGCVE DLNGQ+EPEVKFHSIGIISDD
Sbjct: 57  -VAGFVPGPLLSLKEQIEKDKEDDSLRRWKEKLLGCVESDLNGQLEPEVKFHSIGIISDD 115

Query: 121 FGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQS 180
            GEI TPLP+D++Q+GH LF L+EGSR+QLKLTF+V+HNIVSGL YSNTVWK G+QVDQS
Sbjct: 116 IGEINTPLPVDESQSGHPLFALREGSRYQLKLTFSVLHNIVSGLAYSNTVWKGGIQVDQS 175

Query: 181 KGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLK----------------FEDDDR 224
           KGMLGTFAPQREPYVHTLEE+TTPSGVLARG YSAKLK                FEDDDR
Sbjct: 176 KGMLGTFAPQREPYVHTLEEDTTPSGVLARGTYSAKLKANIISSFYILGCCLMQFEDDDR 235

Query: 225 RCHMELNYSFEIKKSR 240
           RCHMEL YSFEIKK R
Sbjct: 236 RCHMELKYSFEIKKRR 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468580|ref|XP_004151999.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 161/241 (66%), Positives = 188/241 (78%), Gaps = 30/241 (12%)

Query: 1   MESGKK--EEAGPSRGVVNAEEKKDKQREMKTEKPLTISEVLLADEEEEEEYDDEDVKEG 58
           ME GK+  EEAGPS           K  E + EK           E EE E DD+D    
Sbjct: 1   MEVGKRLEEEAGPSSA--------GKVDEFRHEK-----------ESEESEVDDKD---- 37

Query: 59  DGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIIS 118
                GF+PGPL+SLKEQ+EKDKDD+SLRRWKEKLLGC+E DL+ Q EPEVKFHSIGIIS
Sbjct: 38  -----GFTPGPLLSLKEQLEKDKDDESLRRWKEKLLGCLESDLSEQREPEVKFHSIGIIS 92

Query: 119 DDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVD 178
           D+FGE+ TPLP+++N++G VLFTL+EGSR+QL+LTF V HNIVSGL+YSN VW+ GL VD
Sbjct: 93  DEFGEVNTPLPVNENESGRVLFTLQEGSRYQLRLTFTVTHNIVSGLSYSNKVWRGGLIVD 152

Query: 179 QSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
           Q++GMLGTFAPQREPYV TLEEETTPSG+LARG+YSAKLKFEDDD+RC+MEL YSFEIKK
Sbjct: 153 QTQGMLGTFAPQREPYVETLEEETTPSGILARGIYSAKLKFEDDDKRCYMELPYSFEIKK 212

Query: 239 S 239
           S
Sbjct: 213 S 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571248|ref|XP_002526574.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis] gi|223534135|gb|EEF35852.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis]

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 172/244 (70%), Positives = 204/244 (83%), Gaps = 8/244 (3%)

Query: 2   ESGKKEEAGPSR----GVVNAEEKKDKQREMKTEKPLTISEVLLADEEEEEEYDDEDVKE 57
           E G  E AGPS     GVV +E+++ +Q EM     L   E ++ D  ++++ ++E+ + 
Sbjct: 4   EKGLMEAAGPSSTKDCGVV-SEKQEIRQEEMAEN--LRAEEAVIDDVGDDDDDNEEEEEI 60

Query: 58  GDGV-VAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGI 116
            +GV V GF PGPL+SLK+QI+KDKDDDSLRRWKEKLLGCVE +LNGQMEPEVKFHSIGI
Sbjct: 61  TNGVPVTGFVPGPLLSLKDQIDKDKDDDSLRRWKEKLLGCVESELNGQMEPEVKFHSIGI 120

Query: 117 ISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQ 176
           IS+D  EI TPLP+D N++G +LFTLKEGSR+QLKLTF+V+HNIVSGLTYSNTVWK GLQ
Sbjct: 121 ISNDLEEINTPLPVDANRSGRLLFTLKEGSRYQLKLTFSVLHNIVSGLTYSNTVWKGGLQ 180

Query: 177 VDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEI 236
           VD++KGMLGTFAPQREPYVHTLEEETTPSGVLARG YSAKLKFEDDDRRCHMEL YSFEI
Sbjct: 181 VDKNKGMLGTFAPQREPYVHTLEEETTPSGVLARGTYSAKLKFEDDDRRCHMELKYSFEI 240

Query: 237 KKSR 240
           KK++
Sbjct: 241 KKNK 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572280|ref|XP_003554297.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Glycine max]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/243 (67%), Positives = 192/243 (79%), Gaps = 17/243 (6%)

Query: 1   MESG-----KKEEAGPSRGVVNAEEKKDKQREMKTEKPLTISEVLLADEEEEEEYDDEDV 55
           MESG       EEAGPS G+       D ++   TEK     +    +EEEEEE   ED 
Sbjct: 1   MESGGNGKRAHEEAGPSSGI-------DGRKLEMTEKASDDDKEEEEEEEEEEEGAIEDS 53

Query: 56  KEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIG 115
           K G      F PGPL+SLKEQIE+DK+D+SLRRWKEKLLGC+E D++GQ++PEVKFHSIG
Sbjct: 54  KNG-----FFVPGPLLSLKEQIERDKEDESLRRWKEKLLGCLESDIDGQLDPEVKFHSIG 108

Query: 116 IISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGL 175
           I+S+DFGEI TPLP+D+N+NG  LFTL+EGSR+QLKL F+V+HNIVSGLTYSNTVWK GL
Sbjct: 109 ILSEDFGEIVTPLPVDENRNGCTLFTLREGSRYQLKLKFSVLHNIVSGLTYSNTVWKGGL 168

Query: 176 QVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFE 235
           QVDQSKGMLG FAPQ+EPYV+ L+E+TTPSG LARG+YSAKLKFEDDDRRCHMEL Y FE
Sbjct: 169 QVDQSKGMLGAFAPQKEPYVYALKEDTTPSGALARGVYSAKLKFEDDDRRCHMELKYLFE 228

Query: 236 IKK 238
           IKK
Sbjct: 229 IKK 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7228160|emb|CAB77025.1| putative Rho GDP dissociation inhibitor [Nicotiana tabacum]

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 155/241 (64%), Positives = 187/241 (77%), Gaps = 17/241 (7%)

Query: 1   MESGK-KEEAGPSRGVVNAEEKKDKQREMKTEKPLTISEVLLADEEEEEEYDDEDVKEGD 59
           ME G  KEEAGPSRG+  +E+K+ ++ E    +               E+  ++D    D
Sbjct: 2   MEGGNNKEEAGPSRGLNFSEDKRKEELEEGDSE---------------EDEHNQD-SATD 45

Query: 60  GVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISD 119
            +   + PGPL+SLK+QIEKDK+D+SLRRWKEKLLGC+E DLNGQMEPEVKFHS+GI+S 
Sbjct: 46  IITTSYVPGPLLSLKDQIEKDKEDESLRRWKEKLLGCLESDLNGQMEPEVKFHSVGILSS 105

Query: 120 DFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQ 179
           DF EI TPLP+ + Q+  VLFTL+EGS ++LKLTF+V+HNIVSGL Y+NTVWKAGLQVDQ
Sbjct: 106 DFEEINTPLPVKEGQSKSVLFTLREGSEYRLKLTFSVLHNIVSGLAYTNTVWKAGLQVDQ 165

Query: 180 SKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKS 239
           SKGMLGTFAPQREPY+H LEEETTPSG LARG Y+AKLKF DDD+RCH+ LNYSFEI K 
Sbjct: 166 SKGMLGTFAPQREPYIHMLEEETTPSGALARGTYTAKLKFVDDDKRCHLVLNYSFEISKG 225

Query: 240 R 240
           R
Sbjct: 226 R 226

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515780|ref|XP_004164926.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 140/176 (79%), Positives = 164/176 (93%)

Query: 64  GFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGE 123
           GF+PGPL+SLKEQ+EKDKDD+SLRRWKEKLLGC+E DL+ Q EPEVKFHSIGIISD+FGE
Sbjct: 38  GFTPGPLLSLKEQLEKDKDDESLRRWKEKLLGCLESDLSEQREPEVKFHSIGIISDEFGE 97

Query: 124 ITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGM 183
           + TPLP+++N++G VLFTL+EGSR+QL+LTF V HNIVSGL+YSN VW+ GL VDQ++GM
Sbjct: 98  VNTPLPVNENESGRVLFTLQEGSRYQLRLTFTVTHNIVSGLSYSNKVWRGGLIVDQTQGM 157

Query: 184 LGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKS 239
           LGTFAPQREPYV TLEEETTPSG+LARG+YSAKLKFEDDD+RC+MEL YSFEIKKS
Sbjct: 158 LGTFAPQREPYVETLEEETTPSGILARGIYSAKLKFEDDDKRCYMELPYSFEIKKS 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40241231|emb|CAF02295.1| Rho GDP dissociation inhibitor 1 [Medicago truncatula]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 157/243 (64%), Positives = 185/243 (76%), Gaps = 29/243 (11%)

Query: 1   MESGKK----EEAGPSRGVVNAEEKKDKQREMKTEKPLTISEVLLADEEEEEEYDDEDVK 56
           ME GKK    E+AGPS  +           +  TEKP     V   DEE+E         
Sbjct: 1   MEGGKKSHEQEQAGPSSAI-----------DKTTEKPTHTFHVASEDEEDE--------- 40

Query: 57  EGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGI 116
              G V  F P PL+SLKEQIEKDK+D+SLRRWKEKLLG +E DL+ Q+EPEVKFHSIGI
Sbjct: 41  ---GQV--FVPSPLLSLKEQIEKDKEDESLRRWKEKLLGSLESDLDDQLEPEVKFHSIGI 95

Query: 117 ISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQ 176
           +S+DFGEI TPLP++++QN  +LFTL+EGSR+QLKL F+VMHN+VSGLTYSNTVWK GLQ
Sbjct: 96  LSEDFGEIVTPLPVEEHQNSRMLFTLREGSRYQLKLQFSVMHNLVSGLTYSNTVWKGGLQ 155

Query: 177 VDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEI 236
           VDQSKGMLGTFAPQ+ PYV+ L+E+TTP+G LARG+YSAKLKFEDDD+RCHMEL Y FEI
Sbjct: 156 VDQSKGMLGTFAPQKGPYVYALKEDTTPAGALARGVYSAKLKFEDDDKRCHMELKYLFEI 215

Query: 237 KKS 239
           KKS
Sbjct: 216 KKS 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537138|ref|XP_003537087.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Glycine max]

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 138/174 (79%), Positives = 160/174 (91%)

Query: 65  FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEI 124
           F PGPL+SLK+QIEKDK+D+SLRRWKEKLLGC+E DL+GQ+ PEVKFHSIGIIS+DFGE+
Sbjct: 61  FVPGPLLSLKDQIEKDKEDESLRRWKEKLLGCMESDLDGQIHPEVKFHSIGIISEDFGEV 120

Query: 125 TTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGML 184
            T L +D++QNGH+LFTL+EGS +QLKL F+V+HNIVSGLTY NTVWK GLQVDQSKGML
Sbjct: 121 ITSLSVDESQNGHILFTLREGSHYQLKLKFSVLHNIVSGLTYCNTVWKGGLQVDQSKGML 180

Query: 185 GTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
           GTFAPQ+EPYVH L+E+ TPSGVLARG+YSAK+KFEDDDRRCHMEL YS EIKK
Sbjct: 181 GTFAPQKEPYVHALKEDITPSGVLARGVYSAKIKFEDDDRRCHMELKYSLEIKK 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075212|gb|ACJ85966.1| unknown [Medicago truncatula] gi|388520799|gb|AFK48461.1| unknown [Medicago truncatula]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/243 (64%), Positives = 185/243 (76%), Gaps = 29/243 (11%)

Query: 1   MESGKK----EEAGPSRGVVNAEEKKDKQREMKTEKPLTISEVLLADEEEEEEYDDEDVK 56
           ME GKK    E+AGPS  +       DK     TEKP     V   DEE+E +       
Sbjct: 1   MEGGKKSHEQEQAGPSSAI-------DK----TTEKPTHTFHVASEDEEDEGQV------ 43

Query: 57  EGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGI 116
                   F P PL+SLKEQIEKDK+D+SLRRWKEKLLG +E DL+ Q+EPEVKFHSIGI
Sbjct: 44  --------FVPSPLLSLKEQIEKDKEDESLRRWKEKLLGSLESDLDDQLEPEVKFHSIGI 95

Query: 117 ISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQ 176
           +S+DFGEI TPLP++++QN  +LFTL+EGSR+QLKL F+VMHN+VSGLTYSNTVWK GLQ
Sbjct: 96  LSEDFGEIVTPLPVEEHQNSRMLFTLREGSRYQLKLQFSVMHNLVSGLTYSNTVWKGGLQ 155

Query: 177 VDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEI 236
           VDQSKGMLGTFAPQ+ PYV+ L+E+TTP+G LARG+YSAKLKFEDDD+RCHMEL Y FEI
Sbjct: 156 VDQSKGMLGTFAPQKGPYVYALKEDTTPAGALARGVYSAKLKFEDDDKRCHMELKYLFEI 215

Query: 237 KKS 239
           KK+
Sbjct: 216 KKA 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2077462	240	SCN1 "SUPERCENTIPEDE1" [Arabid	0.708	0.708	0.563	6.7e-49
TAIR|locus:2027154	223	AT1G62450 [Arabidopsis thalian	0.712	0.766	0.537	4.8e-46
TAIR|locus:2008965	223	AT1G12070 [Arabidopsis thalian	0.716	0.771	0.540	5.6e-45
ASPGD|ASPL0000061086	197	AN0163 [Emericella nidulans (t	0.720	0.878	0.371	4.6e-25
DICTYBASE|DDB_G0291077	197	rdiA "Rho GDP-dissociation inh	0.704	0.857	0.381	1.6e-24
MGI|MGI:101940	200	Arhgdib "Rho, GDP dissociation	0.720	0.865	0.371	3.3e-24
RGD|1305383	200	Arhgdib "Rho, GDP dissociation	0.720	0.865	0.371	4.2e-24
UNIPROTKB|F1P3P3	204	ARHGDIA "Uncharacterized prote	0.712	0.838	0.355	1.4e-23
UNIPROTKB|Q9TU03	200	ARHGDIB "Rho GDP-dissociation	0.716	0.86	0.363	1.8e-23
UNIPROTKB|P52566	201	ARHGDIB "Rho GDP-dissociation	0.716	0.855	0.363	1.8e-23

TAIR|locus:2077462 SCN1 "SUPERCENTIPEDE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 97/172 (56%), Positives = 132/172 (76%)

Query:    68 GPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQ-MEPEVKFHSIGIISDDFGEITT 126
             GP  ++KE +EKDKDD+SLR+WKE+LLG V+    G+ ++PEV+  S+ IIS    +I  
Sbjct:    65 GPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVRIDSLAIISPGRPDIVL 124

Query:   127 PLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGT 186
              +P + N  G + FTLKEGS++ LK TF+V +NIVSGL Y+NTVWK G++VD++K MLGT
Sbjct:   125 LVPENGNPKG-MWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAKEMLGT 183

Query:   187 FAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
             F+PQ EPY H + EETTPSG+ ARG YSA+ KF DDD +C++E+NYSF+I+K
Sbjct:   184 FSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRK 235

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009932 "cell tip growth" evidence=IMP

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2027154 AT1G62450 [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 94/175 (53%), Positives = 126/175 (72%)

Query:    68 GPLVSLKEQIEKDKDDDSLRRWKEKLLGCVE-GDLNGQMEPEVKFHSIGIISDDFGEITT 126
             GP+++LKEQ+E+DKDD+SLRRWKE+LLG V+  D+    +P VK   + I S D  E+  
Sbjct:    48 GPMIALKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKILDLTIRSPDREEMVL 107

Query:   127 PLPID--KNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGML 184
              +P D   N  G   FT+KEGS++ L   F V +NIVSGL Y+NTVWK G++VD +K ML
Sbjct:   108 TIPEDGLPNPKGP-WFTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVKVDSTKAML 166

Query:   185 GTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKS 239
             GTF+PQ E Y H + EE TPSG+ ARG YSA+ KF DDD +C++E+NY+F+I+KS
Sbjct:   167 GTFSPQAESYQHVMPEEMTPSGMFARGSYSARTKFIDDDNKCYLEINYTFDIRKS 221

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2008965 AT1G12070 [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 94/174 (54%), Positives = 126/174 (72%)

Query:    68 GPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQM-EPEVKFHSIGIISDDFGEITT 126
             GP+++LKEQ+EKDKDD+SLRRWKE+LLG V+ +  G+  +P VK  ++ I S D  ++  
Sbjct:    48 GPMIALKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKILTLTIRSPDREDMVL 107

Query:   127 PLPID-KNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLG 185
              +P + K  +    FTLKEGS++ L  TF V +NIVSGL YSNTVWK G++V   K MLG
Sbjct:   108 TIPENGKPASKGPWFTLKEGSKYTLIFTFRVTNNIVSGLQYSNTVWKTGIKVYSRKEMLG 167

Query:   186 TFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKS 239
             TF+PQ EPY H + EET PSG+L RG YS K KF DDD +C++E NY+F+I+K+
Sbjct:   168 TFSPQAEPYTHVMFEETAPSGLLVRGSYSVKSKFVDDDNQCYLENNYTFDIRKN 221

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

ASPGD|ASPL0000061086 AN0163 [Emericella nidulans (taxid:162425)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 68/183 (37%), Positives = 109/183 (59%)

Query:    64 GFSPGPLVSLKEQIEKDKDDDSLRRWKEKL-LGCVE--GDLNGQMEPEVKFHSIGIIS-- 118
             GF  G   ++ E  E DK+D+SL RWK  L L   E  GD N      +K  ++ +    
Sbjct:    15 GFKVGEKKTIAEYNELDKNDESLNRWKASLGLNTGEPTGDPNDPRTCIIKTLALEVQGRP 74

Query:   119 DDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVD 178
             D   +++ P  ++K ++    FT+KEG+ F++K+TF V H+++SGL Y   V + G++V 
Sbjct:    75 DVVIDVSAPGALEKLKDKP--FTIKEGAHFRIKVTFEVHHDVLSGLKYLQVVKRKGIRVS 132

Query:   179 QSKGMLGTFAP--QREP-YVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFE 235
             + + MLG++AP    +P Y    +EE  PSG++ARG Y+A+ KF DDD + H+  ++SF+
Sbjct:   133 KDQEMLGSYAPCTTGKPIYEKKFQEEEAPSGMMARGHYNAESKFIDDDDKVHLHFHWSFD 192

Query:   236 IKK 238
             I K
Sbjct:   193 IAK 195

GO:0007015 "actin filament organization" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0032889 "regulation of vacuole fusion, non-autophagic" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

DICTYBASE|DDB_G0291077 rdiA "Rho GDP-dissociation inhibitor 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 69/181 (38%), Positives = 103/181 (56%)

Query:    65 FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGC-VEGDLNGQMEPEVKFHSIGIISDDFGE 123
             + PG  VS+ +  ++D +D++L+R+KE LLG  V    +   +  +K   I I     G 
Sbjct:    14 YVPGKHVSVDQLKQQDAEDEALKRYKESLLGTGVHAPKDDPRKLVIKEMKIQIE----GR 69

Query:   124 ITTPLPIDKNQNGHVL----FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQ 179
               T  P+D  +    +    F LKE   +++ LTFN+ H+IVSGL  +NTV++ G++V  
Sbjct:    70 PDTIYPLDTKELIKEMKTKPFVLKESCHYKITLTFNIQHDIVSGLKQTNTVYRKGIKVST 129

Query:   180 SKGMLGTFAPQREPYVHTLEE---ETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEI 236
              K MLG+FAPQ   +  T      E  PSG+LARG Y+AK+ F DDD   H+ + Y+F I
Sbjct:   130 EKHMLGSFAPQALAHSVTNPRHGWEEAPSGMLARGSYTAKVVFTDDDNEEHLSVEYAFSI 189

Query:   237 K 237
             K
Sbjct:   190 K 190

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0035023 "regulation of Rho protein signal transduction" evidence=TAS

GO:0017048 "Rho GTPase binding" evidence=TAS

GO:0006907 "pinocytosis" evidence=TAS

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0000910 "cytokinesis" evidence=TAS

GO:0000902 "cell morphogenesis" evidence=TAS

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:101940 Arhgdib "Rho, GDP dissociation inhibitor (GDI) beta" [Mus musculus (taxid:10090)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 65/175 (37%), Positives = 96/175 (54%)

Query:    65 FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDF-GE 123
             + P P  SLKE  E DKDD+SL ++K+ LLG V    +  + P V    + ++ D   G 
Sbjct:    23 YKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVADPTV-PNVTVTRLSLVCDSAPGP 81

Query:   124 ITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGM 183
             IT  L  D        F LKEG  +++K+ F V  +IVSGL Y    ++ G++VD++  M
Sbjct:    82 ITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQHTYRTGMRVDKATFM 141

Query:   184 LGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
             +G++ P+ E Y      E  P G+LARG Y  K  F DDD++ H+   ++  IKK
Sbjct:   142 VGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAIKK 196

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1305383 Arhgdib "Rho, GDP dissociation inhibitor (GDI) beta" [Rattus norvegicus (taxid:10116)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 65/175 (37%), Positives = 96/175 (54%)

Query:    65 FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDF-GE 123
             + P P  SLKE  E DKDD+SL ++K+ LLG V    +  + P V    + ++ D   G 
Sbjct:    23 YKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVADPTV-PNVTVTRLSLVCDSAPGP 81

Query:   124 ITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGM 183
             IT  L  D        F LKEG  +++K+ F V  +IVSGL Y    ++ G++VD++  M
Sbjct:    82 ITMDLTGDLKALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQQTYRNGMKVDKATFM 141

Query:   184 LGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
             +G++ P+ E Y      E  P G+LARG Y  K  F DDD++ H+   ++  IKK
Sbjct:   142 VGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAIKK 196

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1P3P3 ARHGDIA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 63/177 (35%), Positives = 96/177 (54%)

Query:    65 FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVE--GDLNGQMEPEVKFHSIGIISDDF- 121
             + P    S++E  E DKDD+SLR++KE LLG V    D N    P V    + ++     
Sbjct:    27 YKPPAQKSIQEIQELDKDDESLRKYKEALLGAVTVTADPNA---PNVVVTKLTLVCTTAP 83

Query:   122 GEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSK 181
             G +   L  D        F LKEG  +++K++F V   IVSGL Y    ++ G+++D+++
Sbjct:    84 GPLELDLTGDLESYKKQAFVLKEGVEYRIKISFRVNREIVSGLKYIQHTFRKGVKIDKTE 143

Query:   182 GMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
              M+G++ P+ E Y      E  P G+LARG Y+ K KF DDD+  H+   ++  IKK
Sbjct:   144 YMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSKFTDDDKTDHLSWEWNLTIKK 200

GO:0005737 "cytoplasm" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

UNIPROTKB|Q9TU03 ARHGDIB "Rho GDP-dissociation inhibitor 2" [Bos taurus (taxid:9913)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 64/176 (36%), Positives = 95/176 (53%)

Query:    65 FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQ-MEPEVKFHSIGIISDDF-G 122
             + P P  SLKE  E DKDD+SL ++K+ LLG  +G +      P V    + ++ +   G
Sbjct:    23 YKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DGPVVADPTAPNVTVTRLTLVCESAPG 80

Query:   123 EITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKG 182
              IT  L  D        F LKEG  +++K+ F V  +IVSGL Y    ++ G++VD++  
Sbjct:    81 PITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDIVSGLKYVQHTYRTGVKVDKATF 140

Query:   183 MLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
             M+G++ P+ E Y      E  P G+LARG Y  K  F DDD+  H+   ++  IKK
Sbjct:   141 MVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKK 196

GO:0005737 "cytoplasm" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

UNIPROTKB|P52566 ARHGDIB "Rho GDP-dissociation inhibitor 2" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 64/176 (36%), Positives = 96/176 (54%)

Query:    65 FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDL-NGQMEPEVKFHSIGIISDDF-G 122
             + P P  SLKE  E DKDD+SL ++K+ LLG  +G +      P V    + ++ +   G
Sbjct:    24 YKPPPQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPG 81

Query:   123 EITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKG 182
              IT  L  D          LKEGS +++K+ F V  +IVSGL Y    ++ G++VD++  
Sbjct:    82 PITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATF 141

Query:   183 MLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
             M+G++ P+ E Y      E  P G+LARG Y  K  F DDD++ H+   ++  IKK
Sbjct:   142 MVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKK 197

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0006955 "immune response" evidence=TAS

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0007162 "negative regulation of cell adhesion" evidence=TAS

GO:0007266 "Rho protein signal transduction" evidence=TAS

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SFC6	GDIR_ARATH	No assigned EC number	0.5196	0.7958	0.7958	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II2575 SubName- Full=Putative uncharacterized protein; (251 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
pfam02115	200	pfam02115, Rho_GDI, RHO protein GDP dissociation i	4e-87

>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor

 Score =  256 bits (656), Expect = 4e-87
 Identities = 84/197 (42%), Positives = 114/197 (57%), Gaps = 1/197 (0%)

Query: 43  DEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLN 102
           +   E+  +     E D     + P P  SLKE  E DK+D+SLR++KEKLLG V   L 
Sbjct: 5   EPTAEQAEEIAAEDEEDEDSVNYKPPPQKSLKEIQELDKEDESLRKYKEKLLGPVP-VLV 63

Query: 103 GQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVS 162
              EP V   S+ ++S+    I   L  D  Q    LF LKEGS ++LK++F V   IVS
Sbjct: 64  DPKEPNVVVTSLTLLSEGAPPIELDLTGDLKQLKSQLFVLKEGSEYRLKISFKVQREIVS 123

Query: 163 GLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDD 222
           GL Y    ++AGL+VD++K M+G++ P+ E Y +   EE  PSG LARG YSAK KF DD
Sbjct: 124 GLKYVQHTYRAGLRVDKTKYMVGSYGPRAEEYEYLTPEEEAPSGALARGSYSAKSKFTDD 183

Query: 223 DRRCHMELNYSFEIKKS 239
           D+  H+   ++ EIKK 
Sbjct: 184 DKTDHLSWEWNLEIKKD 200

Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG3205	200	consensus Rho GDP-dissociation inhibitor [Signal t	100.0
PF02115	200	Rho_GDI: RHO protein GDP dissociation inhibitor; I	100.0
PF02221	134	E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The	96.06
cd00917	122	PG-PI_TP The phosphatidylinositol/phosphatidylglyc	94.19
smart00737	118	ML Domain involved in innate immunity and lipid me	92.09
cd00258	162	GM2-AP GM2 activator protein (GM2-AP) is a non-enz	90.22
PF11797	140	DUF3324: Protein of unknown function C-terminal (D	88.85

>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-79  Score=528.94  Aligned_cols=174  Identities=47%  Similarity=0.794  Sum_probs=169.4

Q ss_pred             ccCCcccChHHHHhcCCCchhHHHHHhhhCCCcCCCCCCCCCCcEEEEEEEEEeCCCCceEeeCCCCCCC--CCceeEEe
Q 026326           65 FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQ--NGHVLFTL  142 (240)
Q Consensus        65 yk~g~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~p~V~i~~L~L~~egr~~i~~~L~~~~~~--k~~~~f~I  142 (240)
                      |++||+|||+||+++|+|||||||||++|||.++ .+.++++|+|+|.+|+|+|+||||++++|+++.+.  +++ .|+|
T Consensus        24 yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~-~~~~~~dp~VvV~~LtLl~~~r~pi~ldlt~~~~~~~k~~-~f~i  101 (200)
T KOG3205|consen   24 YKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD-VIVDPNDPRVVVLKLTLLSEGRPPIVLDLTGDLSPELKKQ-WFTI  101 (200)
T ss_pred             cCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC-cccCCCCCeEEEEEEEEEeCCCCCeEEeCCCCccccccCc-eEEe
Confidence            9999999999999999999999999999999887 57789999999999999999999999999988754  776 9999


Q ss_pred             ccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEEeC
Q 026326          143 KEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDD  222 (240)
Q Consensus       143 KEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDD  222 (240)
                      |||+.|+|+|+|+|||+|||||||+|+|||.||+||++..|||||+|++++|+|.+|+|||||||||||+|+|+|+|+||
T Consensus       102 KEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p~eeAPsGmlaRG~Ys~~skF~DD  181 (200)
T KOG3205|consen  102 KEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSYGPQAEPYEFVTPEEEAPSGMLARGSYSAKSKFTDD  181 (200)
T ss_pred             ecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccCCCCCcceeeeCCcccCCccceeecceeeeeEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEEeEEEeecC
Q 026326          223 DRRCHMELNYSFEIKKSR  240 (240)
Q Consensus       223 Dk~~hL~~eWsfeI~Kd~  240 (240)
                      |++|||+|+|+|+|+|+|
T Consensus       182 Dk~~hLe~~w~~~I~K~W  199 (200)
T KOG3205|consen  182 DKTCHLEWNWTFDIKKEW  199 (200)
T ss_pred             CCceEEEEEEEEEEeecc
Confidence            999999999999999998

>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them

Probab=100.00  E-value=9.7e-78  Score=523.91  Aligned_cols=175  Identities=47%  Similarity=0.792  Sum_probs=144.6

Q ss_pred             ccccCCcccChHHHHhcCCCchhHHHHHhhhCCCcCCCCCCCCCCcEEEEEEEEEeCCCCceEeeCCCCC-CCCCceeEE
Q 026326           63 AGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDK-NQNGHVLFT  141 (240)
Q Consensus        63 ~~yk~g~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~p~V~i~~L~L~~egr~~i~~~L~~~~-~~k~~~~f~  141 (240)
                      ++|++|++|||+||++||++||||||||+||||.++ .++++++|+|+|++|+|+|+|||||+++|+++. .++++ +|+
T Consensus        25 ~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~-~~~d~~~p~V~v~~l~l~~eg~p~i~ldl~~~~~~~k~~-~f~  102 (200)
T PF02115_consen   25 PGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD-VIGDPNDPKVIVKSLTLVVEGRPPIVLDLTGDLEDLKKK-PFT  102 (200)
T ss_dssp             ----------HHHHHHTTTT-HHHHHHHHHHH-SS---SS-STS-SEEEEEEEEEETTSS-EEEETTS-GGGGGGS-EEE
T ss_pred             cccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc-ccCCCCCCeEEEEEEEEEcCCCCCeeeeccCccccccCC-cEE
Confidence            459999999999999999999999999999999876 577888999999999999999999999999885 46776 999


Q ss_pred             eccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEEe
Q 026326          142 LKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFED  221 (240)
Q Consensus       142 IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvD  221 (240)
                      |||||+|+|+|+|+|||+||+||||+|+|||+||+|++++.|||||+|++++|+|+||+++|||||||||+|+|+|+|+|
T Consensus       103 IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~aks~f~D  182 (200)
T PF02115_consen  103 IKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSGMLARGSYTAKSKFVD  182 (200)
T ss_dssp             EETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BSTTT-EEEEEEEEEEE
T ss_pred             ccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceeeeccCCCCcceEEeCcCccCCCceeEeeeeeEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEEeEEEeec
Q 026326          222 DDRRCHMELNYSFEIKKS  239 (240)
Q Consensus       222 DDk~~hL~~eWsfeI~Kd  239 (240)
                      ||+++||+|+|+|+|+||
T Consensus       183 dD~~~~l~~~w~feI~Kd  200 (200)
T PF02115_consen  183 DDKNVHLEWEWSFEIKKD  200 (200)
T ss_dssp             TTSSECEEEEEEEEEESS
T ss_pred             CCCcEEEEEEEEEEEecC
Confidence            999999999999999996

The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....

>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products

Probab=96.06  E-value=0.2  Score=39.38  Aligned_cols=93  Identities=19%  Similarity=0.319  Sum_probs=64.7

Q ss_pred             eEEeccCCeEEEEEEEEEeceeeecceeEEEEEEcc-eEeecc----c-ccccc---cC---CCC-C---CeeEecC-CC
Q 026326          139 LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAG-LQVDQS----K-GMLGT---FA---PQR-E---PYVHTLE-EE  201 (240)
Q Consensus       139 ~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~G-I~Vdk~----e-~mlGS---Y~---P~~-e---~Y~~~fp-~E  201 (240)
                      +-.++-|..++|.+.|.+.+...++++..-.++-.| ++|--.    . ..-..   ..   |-. .   .|++.++ +.
T Consensus        25 pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~~~~~~~~~i~~  104 (134)
T PF02221_consen   25 PCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEYYTYTYTIPIPK  104 (134)
T ss_dssp             SEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEEEEEEEEEEEST
T ss_pred             CCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcccccccCccCCCcEEEEEEEEEccc
Confidence            566899999999999999999999999877778887 877554    1 22221   11   222 1   2344443 34


Q ss_pred             CCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEE
Q 026326          202 TTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEI  236 (240)
Q Consensus       202 eAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI  236 (240)
                      ..|     .|+|+++.+++|+++...+=++-.++|
T Consensus       105 ~~p-----~~~~~i~~~l~d~~~~~i~C~~~~v~I  134 (134)
T PF02221_consen  105 IYP-----PGKYTIQWKLTDQDGEEIACFEFPVKI  134 (134)
T ss_dssp             TSS-----SEEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             cee-----eEEEEEEEEEEeCCCCEEEEEEEEeEC
Confidence            444     459999999999998777666666655

It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....

>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure

Probab=94.19  E-value=0.83  Score=36.68  Aligned_cols=85  Identities=14%  Similarity=0.076  Sum_probs=56.6

Q ss_pred             eccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccc-c---c---cccCCCC-CCeeEecCCCCCCceeeeeeee
Q 026326          142 LKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKG-M---L---GTFAPQR-EPYVHTLEEETTPSGVLARGLY  213 (240)
Q Consensus       142 IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~-m---l---GSY~P~~-e~Y~~~fp~EeAPSGmLaRG~Y  213 (240)
                      ++.|...+|.+.|....++-+|++-.=.++-.||++-.... .   +   |--=|=. ..+.+.. .-+-| .++-.|+|
T Consensus        24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~~G~~~~~~-~~~ip-~~~P~g~y  101 (122)
T cd00917          24 PAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIEPGDKFLTK-LVDLP-GEIPPGKY  101 (122)
T ss_pred             cCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcCCCcEEEEE-EeeCC-CCCCCceE
Confidence            77889999999999998888887766678888988764433 1   1   2111221 2222222 13444 45566899


Q ss_pred             eeeEEEEeCCCceEE
Q 026326          214 SAKLKFEDDDRRCHM  228 (240)
Q Consensus       214 ~akSkFvDDDk~~hL  228 (240)
                      +++.++.|+|++...
T Consensus       102 ~v~~~l~d~~~~~i~  116 (122)
T cd00917         102 TVSARAYTKDDEEIT  116 (122)
T ss_pred             EEEEEEECCCCCEEE
Confidence            999999998777653

These proteins belong to the ML domain family.

>smart00737 ML Domain involved in innate immunity and lipid metabolism

Probab=92.09  E-value=2.3  Score=33.18  Aligned_cols=82  Identities=22%  Similarity=0.348  Sum_probs=50.1

Q ss_pred             eccCCeEEEEEEEEEeceeeecceeEEEEEE-cc--eEeecccc-c---ccccCCCC--CCeeEecCCCCCCceeeeeee
Q 026326          142 LKEGSRFQLKLTFNVMHNIVSGLTYSNTVWK-AG--LQVDQSKG-M---LGTFAPQR--EPYVHTLEEETTPSGVLARGL  212 (240)
Q Consensus       142 IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR-~G--I~Vdk~e~-m---lGSY~P~~--e~Y~~~fp~EeAPSGmLaRG~  212 (240)
                      ++-|...+|.+.|...+++-+ |+ +++..+ .|  |++-.... .   +|..=|-.  +.|.|.+.- ..|+ .+-+|+
T Consensus        21 ~~~g~~~~i~i~f~~~~~~~~-~~-~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G~~~~~~~~~-~v~~-~~P~~~   96 (118)
T smart00737       21 PVRGKTLTISISFTLNEDISK-LK-VVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKGETVNYTNSL-TVPG-IFPPGK   96 (118)
T ss_pred             CCCCCEEEEEEEEEEcccceE-EE-EEEEEEECCEEEeccCCCCCccccCCCCCCCCCCeeEEEEEee-Eccc-cCCCeE
Confidence            477899999999999888755 54 444444 44  55543222 1   24333443  233333321 1232 555789


Q ss_pred             eeeeEEEEeCCCceE
Q 026326          213 YSAKLKFEDDDRRCH  227 (240)
Q Consensus       213 Y~akSkFvDDDk~~h  227 (240)
                      |+++..++|+|+...
T Consensus        97 ~~v~~~l~d~~~~~i  111 (118)
T smart00737       97 YTVKWELTDEDGEEL  111 (118)
T ss_pred             EEEEEEEEcCCCCEE
Confidence            999999999887765

ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.

>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides

Probab=90.22  E-value=4.8  Score=35.04  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=28.7

Q ss_pred             ecCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 026326          197 TLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIK  237 (240)
Q Consensus       197 ~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~  237 (240)
                      ..|.-+-|+ ||.+|+|.++... +.+|+...=.+-+|.++
T Consensus       122 ~lP~~~LPs-~l~~G~Y~i~~~l-~~~g~~l~C~~~~~sL~  160 (162)
T cd00258         122 TLPNVDLPS-WLTNGNYRITGIL-MADGKELGCGKFTFSLE  160 (162)
T ss_pred             ecccccCCC-ccCCCcEEEEEEE-CCCCCEEEEEEEEEEEe
Confidence            555556684 9999999999966 77777766666666654

GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.

>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function

Probab=88.85  E-value=5.1  Score=33.04  Aligned_cols=84  Identities=19%  Similarity=0.221  Sum_probs=57.5

Q ss_pred             EEEEEEEEec---eeeecceeEEEEEEcce--EeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEEeCC
Q 026326          149 QLKLTFNVMH---NIVSGLTYSNTVWKAGL--QVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDD  223 (240)
Q Consensus       149 ~i~i~FkVq~---eIVsGLkY~q~VkR~GI--~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDD  223 (240)
                      +-.|..+++|   .+++.|+..-.|++.|=  .+.+.+..-.+.||++. +.|..++..-   -|.=|+|+++.+...++
T Consensus        43 ~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~-f~~~i~~~~~---~lk~G~Y~l~~~~~~~~  118 (140)
T PF11797_consen   43 RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSN-FNFPIPLGGK---KLKPGKYTLKITAKSGK  118 (140)
T ss_pred             eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCe-EEeEecCCCc---CccCCEEEEEEEEEcCC
Confidence            3344455544   48889999999988883  56666666779999875 5555555321   56669999999999987


Q ss_pred             CceEEEEEEeEEEee
Q 026326          224 RRCHMELNYSFEIKK  238 (240)
Q Consensus       224 k~~hL~~eWsfeI~K  238 (240)
                      ++ | .|+=.|.|..
T Consensus       119 ~~-W-~f~k~F~It~  131 (140)
T PF11797_consen  119 KT-W-TFTKDFTITA  131 (140)
T ss_pred             cE-E-EEEEEEEECH
Confidence            72 1 3444677754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
1doa_B	219	Structure Of The Rho Family Gtp-Binding Protein Cdc		6e-24
4f38_B	204	Crystal Structure Of Geranylgeranylated Rhoa In Com		6e-24
1fst_A	182	Crystal Structure Of Truncated Human Rhogdi Triple		1e-23
1cc0_E	204	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-23
1ds6_B	180	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-22
1fso_A	139	Crystal Structure Of Truncated Human Rhogdi Quadrup		5e-18
2jhw_A	138	Crystal Structure Of Rhogdi E155a, E157a Mutant Len		2e-17
1ajw_A	145	Structure Of Rhogdi: A C-Terminal Binding Domain Ta		3e-17
2jhz_A	138	Crystal Structure Of Rhogdi E155s, E157s Mutant Len		4e-17
1kmt_A	141	Crystal Structure Of Rhogdi Glu(154,155)ala Mutant		5e-17
2bxw_A	141	Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mut		7e-17
2jhx_A	138	Crystal Structure Of Rhogdi E155h, E157h Mutant Len		8e-17
1ft3_A	139	Crystal Structure Of Truncated Rhogdi K141a Mutant		8e-17
2jhs_A	138	Crystal Structure Of Rhogdi K135h,K138h,K141h Mutan		1e-16
2jht_A	138	Crystal Structure Of Rhogdi K135t,K138t,K141t Mutan		1e-16
1qvy_A	139	Crystal Structure Of Rhogdi K(199,200)r Double Muta		2e-16
2jhu_A	138	Crystal Structure Of Rhogdi E154a,E155a Mutant Leng		2e-16
2ji0_A	138	Crystal Structure Of Rhogdi K138y, K141y Mutant Len		2e-16
1ft0_A	139	Crystal Structure Of Truncated Human Rhogdi K113a M		2e-16
1rho_A	145	Structure Of Rho Guanine Nucleotide Dissociation In		1e-15

>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 219

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 16/183 (8%)
Query: 64  GFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDF 121
            + P    S++E  E DKDD+SLR++KE LLG   V  D N    P V    + ++    
Sbjct: 41  NYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNV---PNVVVTRLTLVCS-- 95
Query: 122 GEITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGL 175
              T P P++ +  G +       F LKEG  +++K++F V   IVSG+ Y    ++ G+
Sbjct: 96  ---TAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGV 152
Query: 176 QVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFE 235
           ++D++  M+G++ P+ E Y      E  P G+LARG Y+ K +F DDDR  H+   ++  
Sbjct: 153 KIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLT 212
Query: 236 IKK 238
           IKK
Sbjct: 213 IKK 215

>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 204

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 16/183 (8%)
Query: 64  GFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDF 121
            + P    S++E  E DKDD+SLR++KE LLG   V  D N    P V    + ++    
Sbjct: 26  NYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNV---PNVVVTRLTLVCS-- 80
Query: 122 GEITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGL 175
              T P P++ +  G +       F LKEG  +++K++F V   IVSG+ Y    ++ G+
Sbjct: 81  ---TAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGV 137
Query: 176 QVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFE 235
           ++D++  M+G++ P+ E Y      E  P G+LARG Y+ K +F DDDR  H+   ++  
Sbjct: 138 KIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLT 197
Query: 236 IKK 238
           IKK
Sbjct: 198 IKK 200

>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant Length = 182

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 16/182 (8%)
Query: 65  FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFG 122
           + P    S++E  E DKDD+SLR++KE LLG   V  D N    P V    + ++     
Sbjct: 5   YKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPN---VPNVVVTGLTLVCS--- 58
Query: 123 EITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQ 176
             + P P++ +  G +       F LKEG  +++K++F V   IVSG+ Y    ++AG+ 
Sbjct: 59  --SAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVA 116
Query: 177 VDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEI 236
           +D +  M+G++ P+ E Y      E  P G+LARG YS K +F DDD+  H+   ++  I
Sbjct: 117 IDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 176
Query: 237 KK 238
           KK
Sbjct: 177 KK 178

>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 204

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 99/183 (54%), Gaps = 16/183 (8%)
Query: 64  GFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDF 121
            + P    S++E  E DKDD+SLR++KE LLG   V  D N    P V    + ++    
Sbjct: 26  NYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNV---PNVVVTGLTLVCS-- 80
Query: 122 GEITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGL 175
              + P P++ +  G +       F LKEG  +++K++F V   IVSG+ Y    ++ G+
Sbjct: 81  ---SAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGV 137
Query: 176 QVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFE 235
           ++D++  M+G++ P+ E Y      E  P G+LARG YS K +F DDD+  H+   ++  
Sbjct: 138 KIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLT 197
Query: 236 IKK 238
           IKK
Sbjct: 198 IKK 200

>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex Length = 180

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
Query: 65  FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDL-NGQMEPEVKFHSIGIISDDF-G 122
           + P P  SLKE  E DKDD+SL ++K+ LLG  +G +      P V    + ++ +   G
Sbjct: 3   YKPPPQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPG 60
Query: 123 EITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKG 182
            IT  L  D          LKEGS +++K+ F V  +IVSGL Y    ++ G++VD++  
Sbjct: 61  PITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATF 120
Query: 183 MLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
           M+G++ P+ E Y      E  P G+LARG Y  K  F DDD++ H+   ++  IKK
Sbjct: 121 MVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKK 176

>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple Mutant Length = 139

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 61/99 (61%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++AG+ +D +  M+G++ P+ E Y     
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGSYGPRAEEYEFLTP 96
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++F IKK
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNFTIKK 135

>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant Length = 138

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 61/99 (61%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+++D++  M+G++ P+ E Y     
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEAYAFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136

>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20 Structures Length = 145

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 125 TTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVD 178
           T P P++ +  G +       F LKEG  +++K++F V   IVSG+ Y    ++ G+++D
Sbjct: 22  TAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKID 81
Query: 179 QSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
           ++  M+G++ P+ E Y      E  P G+LARG Y+ K +F DDDR  H+   ++  IKK
Sbjct: 82  KTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKK 141

>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant Length = 138

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 61/99 (61%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+++D++  M+G++ P+ E Y     
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAESYSFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136

>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant Length = 141

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 103 GQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNV 156
           G M P V    + ++       + P P++ +  G +       F LKEG  +++K++F V
Sbjct: 1   GAMVPNVVVTGLTLVCS-----SAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV 55
Query: 157 MHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAK 216
              IVSG+ Y    ++ G+++D++  M+G++ P+   Y      E  P G+LARG YS K
Sbjct: 56  NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIK 115
Query: 217 LKFEDDDRRCHMELNYSFEIKK 238
            +F DDD+  H+   ++  IKK
Sbjct: 116 SRFTDDDKTDHLSWEWNLTIKK 137

>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant Length = 141

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 11/142 (7%)
Query: 103 GQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNV 156
           G M P V    + ++       + P P++ +  G +       F LKEG  +++K++F V
Sbjct: 1   GAMVPNVVVTGLTLVCS-----SAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV 55
Query: 157 MHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAK 216
              IVSG+ Y    ++ G+ +D +  M+G++ P+ E Y      E  P G+LARG YS K
Sbjct: 56  NREIVSGMKYIQHTYRYGVYIDYTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK 115
Query: 217 LKFEDDDRRCHMELNYSFEIKK 238
            +F DDD+  H+   ++  IKK
Sbjct: 116 SRFTDDDKTDHLSWEWNLTIKK 137

>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant Length = 138

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 61/99 (61%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+++D++  M+G++ P+ E Y     
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEHYHFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136

>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant Length = 139

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 60/99 (60%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+++D +  M+G++ P+ E Y     
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDATDYMVGSYGPRAEEYEFLTP 96
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 135

>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant Length = 138

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 59/99 (59%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+ +D +  M+G++ P+ E Y     
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRHGVHIDHTDYMVGSYGPRAEEYEFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136

>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant Length = 138

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 59/99 (59%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+ +D +  M+G++ P+ E Y     
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRTGVTIDTTDYMVGSYGPRAEEYEFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136

>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant Length = 139

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 61/99 (61%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+++D++  M+G++ P+ E Y     
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  I++
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIRR 135

>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant Length = 138

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 60/99 (60%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+++D++  M+G++ P+   Y     
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136

>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant Length = 138

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 59/99 (59%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG+ Y    ++ G+ +D +  M+G++ P+ E Y     
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVYIDYTDYMVGSYGPRAEEYEFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136

>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant Length = 139

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 60/99 (60%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++ ++F V   IVSG+ Y    ++ G+++D++  M+G++ P+ E Y     
Sbjct: 37  FVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G+LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 135

>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor Length = 145

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 58/99 (58%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
           F LKEG  +++K++F V   IVSG  Y    ++ G+++D++   +G++ P+ E Y     
Sbjct: 44  FVLKEGVEYRIKISFRVNREIVSGXKYIEHTYRKGVKIDKTDYXVGSYGPRAEEYEFLTP 103
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            E  P G LARG YS K +F DDD+  H+   ++  IKK
Sbjct: 104 VEEAPKGXLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	5e-62
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	2e-60
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	8e-53
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A Length = 180

 Score =  191 bits (486), Expect = 5e-62
 Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 2/177 (1%)

Query: 63  AGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFG 122
             + P P  SLKE  E DKDD+SL ++K+ LLG     +     P V    + ++ +   
Sbjct: 1   GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPV-VTDPKAPNVVVTRLTLVCESAP 59

Query: 123 E-ITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSK 181
             IT  L  D          LKEGS +++K+ F V  +IVSGL Y    ++ G++VD++ 
Sbjct: 60  GPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKAT 119

Query: 182 GMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            M+G++ P+ E Y      E  P G+LARG Y  K  F DDD++ H+   ++  IKK
Sbjct: 120 FMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKK 176

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E* Length = 219

 Score =  188 bits (478), Expect = 2e-60
 Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 11/213 (5%)

Query: 26  REMKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDS 85
             M  ++P       +A E EE+E               + P    S++E  E DKDD+S
Sbjct: 14  GLMAEQEPTAEQLAQIAAENEEDE-----------HSVNYKPPAQKSIQEIQELDKDDES 62

Query: 86  LRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEG 145
           LR++KE LLG V    +  +   V      + S   G +   L  D        F LKEG
Sbjct: 63  LRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEG 122

Query: 146 SRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPS 205
             +++K++F V   IVSG+ Y    ++ G+++D++  M+G++ P+ E Y      E  P 
Sbjct: 123 VEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPK 182

Query: 206 GVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
           G+LARG Y+ K +F DDDR  H+   ++  IKK
Sbjct: 183 GMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKK 215

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A Length = 141

 Score =  166 bits (422), Expect = 8e-53
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 103 GQMEPEVKFHSIGIISDDF-GEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIV 161
           G M P V    + ++     G +   L  D        F LKEG  +++K++F V   IV
Sbjct: 1   GAMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIV 60

Query: 162 SGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFED 221
           SG+ Y    ++ G+++D++  M+G++ P+   Y      E  P G+LARG YS K +F D
Sbjct: 61  SGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTD 120

Query: 222 DDRRCHMELNYSFEIKK 238
           DD+  H+   ++  IKK
Sbjct: 121 DDKTDHLSWEWNLTIKK 137

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 29/235 (12%), Positives = 62/235 (26%), Gaps = 61/235 (25%)

Query: 30  TEKPLTISEVLLADEEEEEEYDDEDV----KEGDGVVAGFSPGPLVSLKEQI-------- 77
           T +   +++ L A        D   +     E   ++  +       L  ++        
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 78  ----EKDKDD-DSLRRWK----EKLLGCVEGDLNGQMEPEVK--FHSIGIISDDFGEITT 126
               E  +D   +   WK    +KL   +E  LN     E +  F  + +          
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-----A 385

Query: 127 PLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGT 186
            +P        +L      S     +  + +  +V+ L                  ++  
Sbjct: 386 HIPTI------LL------SLIWFDVIKSDVMVVVNKL--------------HKYSLVEK 419

Query: 187 FAPQREPYVHTLEEETTPSGVLARGL-------YSAKLKFEDDDRRCHMELNYSF 234
              +    + ++  E          L       Y+    F+ DD        Y +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	100.0
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	100.0
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	100.0
2ag4_A	164	GM2-AP, ganglioside GM2 activator; complex of sing	92.64
1xwv_A	129	DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8	85.06
1nep_A	130	EPV20, BNPC2, epididymal secretory protein E1; nie	84.16
3t5g_B	152	Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic	81.92

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A

Probab=100.00  E-value=5.5e-79  Score=523.32  Aligned_cols=176  Identities=36%  Similarity=0.598  Sum_probs=168.5

Q ss_pred             ccccCCcccChHHHHhcCCCchhHHHHHhhhCCCcCCCCCCCCCCcEEEEEEEEEeCCC-CceEeeCCCCC-CCCCceeE
Q 026326           63 AGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDF-GEITTPLPIDK-NQNGHVLF  140 (240)
Q Consensus        63 ~~yk~g~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~p~V~i~~L~L~~egr-~~i~~~L~~~~-~~k~~~~f  140 (240)
                      +||+||++|||+||++||++|||||||||||||+++ .+.++++|+|+|++|+|+++|| +||+++|+++. .++++ +|
T Consensus         1 ~~yk~~~~ksl~e~~~~D~~DESL~k~K~~Llg~~~-~~~~~~~p~v~i~~l~l~~~~~~~pi~~dl~~~~~~~k~~-~f   78 (180)
T 1ds6_B            1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP-VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKE-TI   78 (180)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC-CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHC-EE
T ss_pred             CCcCcCCccCHHHHHhhCcchHHHHHHHHHhcCCCC-CcCCCCCCeEEEEEEEEEeCCCCCCEEEECCCChhhccCC-CE
Confidence            479999999999999999999999999999999876 5667888999999999999999 89999999875 35775 99


Q ss_pred             EeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEE
Q 026326          141 TLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFE  220 (240)
Q Consensus       141 ~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFv  220 (240)
                      +|||||+|+|+|+|+|||+|||||||+|+|||+||+|+++++|||||+|++++|+|+||+|||||||||||+|+|+|+|+
T Consensus        79 ~iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~skF~  158 (180)
T 1ds6_B           79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT  158 (180)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEE
T ss_pred             EecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceEEEEEEeEEEeecC
Q 026326          221 DDDRRCHMELNYSFEIKKSR  240 (240)
Q Consensus       221 DDDk~~hL~~eWsfeI~Kd~  240 (240)
                      |||+++||+|+|+|+|+|+|
T Consensus       159 DDD~~~hl~~~wsfeI~KdW  178 (180)
T 1ds6_B          159 DDDKQDHLSWEWNLSIKKEW  178 (180)
T ss_dssp             CTTCCCCEEEEEEEEEESSC
T ss_pred             cCCCceEEEEEEEEEEeeCC
Confidence            99999999999999999999

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*

Probab=100.00  E-value=2.2e-78  Score=532.20  Aligned_cols=176  Identities=34%  Similarity=0.582  Sum_probs=167.6

Q ss_pred             ccccCCcccChHHHHhcCCCchhHHHHHhhhCCCcCCCCCCCCCCcEEEEEEEEEeCCCC-ceEeeCCCCC-CCCCceeE
Q 026326           63 AGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFG-EITTPLPIDK-NQNGHVLF  140 (240)
Q Consensus        63 ~~yk~g~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~p~V~i~~L~L~~egr~-~i~~~L~~~~-~~k~~~~f  140 (240)
                      ++|+||++|||+||++||++|||||||||||||+++ .+.++++|+|+|++|+|+|+||| ||+++|+++. .++++ +|
T Consensus        40 ~~yk~~~~ksl~E~~~lD~~DESL~kwKesLlg~~~-~~~d~~~P~V~i~~l~l~~~grp~pi~ldl~~~~~~lk~~-~F  117 (219)
T 1doa_B           40 VNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA-VSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQ-SF  117 (219)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHHCCCC-CCCCSSCCSBCCCEEEEECSSCSSCCEEECSSCCGGGGGC-CE
T ss_pred             cCcccCCccCHHHHHhhCcchhHHHHHHHHhcCCCC-CcCCCCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhcCC-CE
Confidence            459999999999999999999999999999999776 46678889999999999999995 5999999875 45776 99


Q ss_pred             EeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEE
Q 026326          141 TLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFE  220 (240)
Q Consensus       141 ~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFv  220 (240)
                      +|||||+|+|+|+|+|||+|||||||+|+|||+||+|+++++|||||+|++++|+|+||+|||||||||||+|+|+|+|+
T Consensus       118 ~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG~Y~akSkF~  197 (219)
T 1doa_B          118 VLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFT  197 (219)
T ss_dssp             EEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCTTSCCSEEEEEEEEE
T ss_pred             EecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcceeeeccCCCCCcccccCCCccCCccceeeeeeeeeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceEEEEEEeEEEeecC
Q 026326          221 DDDRRCHMELNYSFEIKKSR  240 (240)
Q Consensus       221 DDDk~~hL~~eWsfeI~Kd~  240 (240)
                      |||+++||+|+|+|+|+|||
T Consensus       198 DDD~~~hL~~eWsfeI~KdW  217 (219)
T 1doa_B          198 DDDRTDHLSWEWNLTIKKEW  217 (219)
T ss_dssp             CTTCCCCEEEEEEEEEESST
T ss_pred             eCCCceEEEEEEEEEEecCC
Confidence            99999999999999999999

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A

Probab=100.00  E-value=2e-61  Score=400.80  Aligned_cols=136  Identities=31%  Similarity=0.590  Sum_probs=130.1

Q ss_pred             CCCCcEEEEEEEEEeCCCC-ceEeeCCCCC-CCCCceeEEeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeeccc
Q 026326          104 QMEPEVKFHSIGIISDDFG-EITTPLPIDK-NQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSK  181 (240)
Q Consensus       104 ~~~p~V~i~~L~L~~egr~-~i~~~L~~~~-~~k~~~~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e  181 (240)
                      +++|+|+|++|+|+++||+ ||+++|+++. +++++ +|+|||||+|+|+|+|+|||+|||||||+|+|||+||+|++++
T Consensus         2 p~~p~v~i~~l~l~~~~~~~pi~~~l~~~~~~~k~~-~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~   80 (141)
T 1kmt_A            2 AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQ-SFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTD   80 (141)
T ss_dssp             CBCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGC-CEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEE
T ss_pred             CCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhccC-ceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcce
Confidence            4578999999999999965 7999999875 45776 9999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEeecC
Q 026326          182 GMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKSR  240 (240)
Q Consensus       182 ~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~Kd~  240 (240)
                      +|||||+|++++|+|+||+|||||||||||+|+|+|+|+|||+++||+|+|+|+|+|||
T Consensus        81 ~mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~F~DDD~~~hl~~~w~feI~KdW  139 (141)
T 1kmt_A           81 YMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW  139 (141)
T ss_dssp             EEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEEEEESCC
T ss_pred             EeeeccCCCCCcceecCCCccCCceeEEeeeeeeeEEEEcCCCcEEEEEEEeEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999

>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*

Probab=92.64  E-value=1.4  Score=36.19  Aligned_cols=40  Identities=15%  Similarity=0.179  Sum_probs=30.3

Q ss_pred             EecCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 026326          196 HTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIK  237 (240)
Q Consensus       196 ~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~  237 (240)
                      +.+|..+.|+ +|..|.|+++..+.| +++...=.+-.|.|+
T Consensus       123 ~~lp~~~lP~-~l~~G~Y~v~~~~~~-~~~~l~Ci~~~~~l~  162 (164)
T 2ag4_A          123 FVVPDLELPS-WLTTGNYRIESVLSS-SGKRLGCIKIAASLK  162 (164)
T ss_dssp             EEECCCCCCT-TCSSEEEEEEEEEEE-TTEEEEEEEEEEEEE
T ss_pred             eecCcccccC-ccCCceEEEEEEEec-CCCEEEEEEEEEEEE
Confidence            6677778998 999999999999988 555554555555553

>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A

Probab=85.06  E-value=10  Score=29.49  Aligned_cols=93  Identities=16%  Similarity=0.176  Sum_probs=63.4

Q ss_pred             eEEeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecc--cccccccC--CCC--CC--eeEecCC-CCCCceeee
Q 026326          139 LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQS--KGMLGTFA--PQR--EP--YVHTLEE-ETTPSGVLA  209 (240)
Q Consensus       139 ~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~--e~mlGSY~--P~~--e~--Y~~~fp~-EeAPSGmLa  209 (240)
                      |=.|+-|..++|.+.|.-+.+ ++.|+-.-.++=.|+.+-=.  ..-.=++.  |=.  +.  |.+.+|. ...|.    
T Consensus        26 pC~l~rG~~~~i~~~f~~~~~-~~~l~~~v~~~~~g~~ip~p~~~~daC~~~~CPl~~G~~~~y~~~~~v~~~~P~----  100 (129)
T 1xwv_A           26 PCIIHRGKPFTLEALFDANQN-TKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPK----  100 (129)
T ss_dssp             CEEEETTSEEEEEEEEECCSC-BSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBCTTCEEEEEEEEECCTTSCC----
T ss_pred             CCEEeCCCeEEEEEEEECCCc-cceEEEEEEEEEcCEEeecCCCCCCccCCccCcccCCEEEEEEEEeEecccCCC----
Confidence            778999999999999998877 78998888888889887311  00000111  221  23  4444653 33554    


Q ss_pred             eee-eeeeEEEEeCCCceEEEE-EEeEEEee
Q 026326          210 RGL-YSAKLKFEDDDRRCHMEL-NYSFEIKK  238 (240)
Q Consensus       210 RG~-Y~akSkFvDDDk~~hL~~-eWsfeI~K  238 (240)
                       ++ |.++-..+|+++ ...=| .-.++|++
T Consensus       101 -v~~~~v~~~L~d~~~-~l~Cf~~~~~~I~~  129 (129)
T 1xwv_A          101 -SENVVVTVKLVGDNG-VLACAIATHAKIRD  129 (129)
T ss_dssp             -BSCEEEEEEEEETTE-EEEEEEECCEEEEC
T ss_pred             -CceEEEEEEEEcCCC-cEEEEecccEEEeC
Confidence             67 999999999988 56566 67777764

>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*

Probab=84.16  E-value=13  Score=28.91  Aligned_cols=93  Identities=17%  Similarity=0.216  Sum_probs=63.6

Q ss_pred             eEEeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEee--cc-cccc--cccCCCC--CC--eeEecCC-CCCCceee
Q 026326          139 LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVD--QS-KGML--GTFAPQR--EP--YVHTLEE-ETTPSGVL  208 (240)
Q Consensus       139 ~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vd--k~-e~ml--GSY~P~~--e~--Y~~~fp~-EeAPSGmL  208 (240)
                      |=.|+-|..++|.+.|.-+.++ ++|+-.-.++=.|+++-  -. ..--  |..=|-.  +.  |.+.+|. ...|.   
T Consensus        27 PC~l~rG~~~~i~i~f~~~~~~-~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~lpV~~~~P~---  102 (130)
T 1nep_A           27 PCKLHRGQSYSVNVTFTSNTQS-QSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPS---  102 (130)
T ss_dssp             SEEEETTCEEEEEEEEEESSCB-SCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEECCTTSCS---
T ss_pred             CCEEEcCCeEEEEEEEEccccc-ceEEEEEEEEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEEeEecccCCC---
Confidence            7789999999999999998874 67777666667888773  11 1111  2222332  23  5555552 23554   


Q ss_pred             eeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 026326          209 ARGLYSAKLKFEDDDRRCHMELNYSFEIK  237 (240)
Q Consensus       209 aRG~Y~akSkFvDDDk~~hL~~eWsfeI~  237 (240)
                        ++|.++...+|+++....=|.-.++|+
T Consensus       103 --~~~~v~~~L~d~~~~~l~C~~~~~~I~  129 (130)
T 1nep_A          103 --IKVVVEWELTDDKNQRFFCWQIPIEVE  129 (130)
T ss_dssp             --SEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             --ccEEEEEEEEcCCCCEEEEEEEeEEEE
Confidence              679999999999998776777777765

>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*

Probab=81.92  E-value=3.9  Score=34.14  Aligned_cols=83  Identities=17%  Similarity=0.170  Sum_probs=63.4

Q ss_pred             eEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCC---CeeEecCCC--CCCceeeeeeeeeeeEEEEe
Q 026326          147 RFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQRE---PYVHTLEEE--TTPSGVLARGLYSAKLKFED  221 (240)
Q Consensus       147 ~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e---~Y~~~fp~E--eAPSGmLaRG~Y~akSkFvD  221 (240)
                      .-.-+|.|.+ .++|.++|-+|.++=+|-.+..-.+-.|=-.|++.   ...+.+|++  -.|. -+.-|.-.+..+|+|
T Consensus        60 ~V~~~i~Fs~-~epi~nFRmierhyf~~~lle~~dF~FGF~IP~StNTWe~i~E~~~~~~mlpa-~~lsGnv~IeT~f~d  137 (152)
T 3t5g_B           60 AVSRELNFSS-TEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA-SVLTGNVIIETKFFD  137 (152)
T ss_dssp             EEEEEEEEEE-SSCEEEEEEEEEEEETTEEEEEEEEEEEEECTTEEEEEEEEEEBCCGGGSCCH-HHHTTTEEEEEEEEE
T ss_pred             hheEEEEEec-cccccccEEEEEEEEcCceeeeEeeeeeeEcCCCCcccceEEEcCCccccCCH-hHcCCcEEEEEEEec
Confidence            4556889998 88999999999999999999998998888889965   355555533  2232 223599999999999


Q ss_pred             CCCceEEEEE
Q 026326          222 DDRRCHMELN  231 (240)
Q Consensus       222 DDk~~hL~~e  231 (240)
                      +|.-+.-+--
T Consensus       138 ~d~li~~s~v  147 (152)
T 3t5g_B          138 DDLLVSTSRV  147 (152)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEeEE
Confidence            9876664433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1ds6b_	179	b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, Rh	1e-71
d1kmta_	138	b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, Rh	1e-54

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 179

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  214 bits (547), Expect = 1e-71
 Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 2/177 (1%)

Query: 63  AGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDF- 121
             + P P  SLKE  E DKDD+SL ++K+ LLG      + +  P V    + ++ +   
Sbjct: 1   GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVTDPK-APNVVVTRLTLVCESAP 59

Query: 122 GEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSK 181
           G IT  L  D          LKEGS +++K+ F V  +IVSGL Y    ++ G++VD++ 
Sbjct: 60  GPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKAT 119

Query: 182 GMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
            M+G++ P+ E Y      E  P G+LARG Y  K  F DDD++ H+   ++  IKK
Sbjct: 120 FMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKK 176

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (432), Expect = 1e-54
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 105 MEPEVKFHSIGIISDDF-GEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSG 163
           M P V    + ++     G +   L  D        F LKEG  +++K++F V   IVSG
Sbjct: 2   MVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSG 61

Query: 164 LTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDD 223
           + Y    ++ G+++D++  M+G++ P+   Y      E  P G+LARG YS K +F DDD
Sbjct: 62  MKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDD 121

Query: 224 RRCHMELNYSFEIKK 238
           +  H+   ++  IKK
Sbjct: 122 KTDHLSWEWNLTIKK 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1ds6b_	179	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1kmta_	138	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1nepa_	130	Epididymal secretory protein E1 (Niemann-Pick C2 p	87.88
d1kshb_	149	GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}	86.03
d2ag4a1	163	Ganglioside M2 (gm2) activator {Human (Homo sapien	84.41

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-78  Score=515.72  Aligned_cols=176  Identities=35%  Similarity=0.583  Sum_probs=167.7

Q ss_pred             ccccCCcccChHHHHhcCCCchhHHHHHhhhCCCcCCCCCCCCCCcEEEEEEEEEeCCCC-ceEeeCCCCC-CCCCceeE
Q 026326           63 AGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFG-EITTPLPIDK-NQNGHVLF  140 (240)
Q Consensus        63 ~~yk~g~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~p~V~i~~L~L~~egr~-~i~~~L~~~~-~~k~~~~f  140 (240)
                      ++||||++|||+||++||||||||+||||||||.++ .+.++++|+|+|++|+|+|+++| +|+++|+++. +++++ +|
T Consensus         1 ~nyk~~~~ksl~E~~~~D~~DESL~kwKe~Llg~~~-~~~~~~~p~V~i~~l~l~~~~~p~~i~~dl~~~~~~lk~~-~f   78 (179)
T d1ds6b_           1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP-VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKE-TI   78 (179)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC-CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHC-EE
T ss_pred             CCcCCCCccCHHHHHhcCcChhHHHHHHHHhcCCCc-ccCCCCCCcEEEEEeEEEcCCCCCCeEecCCCccccccCC-CE
Confidence            479999999999999999999999999999999765 46678899999999999999987 6999999775 45776 99


Q ss_pred             EeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEE
Q 026326          141 TLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFE  220 (240)
Q Consensus       141 ~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFv  220 (240)
                      +|||||+|+|+|+|+|||+||+||||+|+|||+||+|+++++|||||+|++++|+|+||+|||||||||||+|+|+|+|+
T Consensus        79 ~IKEGs~Y~i~i~F~V~~eivsGLkY~q~vkr~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~F~  158 (179)
T d1ds6b_          79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT  158 (179)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEE
T ss_pred             EecCCCEEEEEEEEEEecccccCcEEEEEEEECCEEEcceeEeeeccCCCCCceeEeCCCccCCceeEEeecceEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceEEEEEEeEEEeecC
Q 026326          221 DDDRRCHMELNYSFEIKKSR  240 (240)
Q Consensus       221 DDDk~~hL~~eWsfeI~Kd~  240 (240)
                      |||+++||+|+|+|+|+|||
T Consensus       159 DDD~~~~l~~~w~feI~KdW  178 (179)
T d1ds6b_         159 DDDKQDHLSWEWNLSIKKEW  178 (179)
T ss_dssp             CTTCCCCEEEEEEEEEESSC
T ss_pred             cCCCcEEEEEEEEEEEecCc
Confidence            99999999999999999999

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-60  Score=391.34  Aligned_cols=135  Identities=31%  Similarity=0.595  Sum_probs=130.4

Q ss_pred             CCCcEEEEEEEEEeCCCC-ceEeeCCCCC-CCCCceeEEeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccc
Q 026326          105 MEPEVKFHSIGIISDDFG-EITTPLPIDK-NQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKG  182 (240)
Q Consensus       105 ~~p~V~i~~L~L~~egr~-~i~~~L~~~~-~~k~~~~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~  182 (240)
                      ..|+|+|++|+|+|+++| +|+++|+++. +++++ +|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++
T Consensus         2 ~~P~V~v~~l~l~~~~~P~~i~ldl~~~l~~lk~~-~f~IKEGs~Y~i~i~F~V~~eivsGLky~q~v~r~Gi~Vdk~~~   80 (138)
T d1kmta_           2 MVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQ-SFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY   80 (138)
T ss_dssp             BCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGC-CEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCceEEEEEEEEcCCCCCCEEEcCCCchhHhcCC-CEEecCCCEEEEEEEEEEccccccCcEEEEEEEECCEEEcceeE
Confidence            368999999999999997 6999999885 56776 99999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEeecC
Q 026326          183 MLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKKSR  240 (240)
Q Consensus       183 mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~Kd~  240 (240)
                      |||||+|++++|+|+||+|||||||||||+|+|+|+|+|||+++||+|+|+|+|+|||
T Consensus        81 mvGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~f~Ddd~~~~l~~~w~feI~KdW  138 (138)
T d1kmta_          81 MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW  138 (138)
T ss_dssp             EEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEEEEESCC
T ss_pred             eeeccCCCCCcEEEeCCCccCCceEEEeeeeeEEEEEEcCCCcEEEEEEEEEEEecCC
Confidence            9999999999999999999999999999999999999999999999999999999999

>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.88  E-value=3.4  Score=30.32  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=63.6

Q ss_pred             eEEeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecc-----cccccccCCCC--CC--eeEecC-CCCCCceee
Q 026326          139 LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQS-----KGMLGTFAPQR--EP--YVHTLE-EETTPSGVL  208 (240)
Q Consensus       139 ~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~-----e~mlGSY~P~~--e~--Y~~~fp-~EeAPSGmL  208 (240)
                      |=.|+.|...+|.|.|....++ .+|+-.=.++=.||++--.     .-.-|..=|=.  +.  |.+.+| +...|    
T Consensus        27 PC~l~rG~~~~i~i~f~~~~~~-~~~~~~v~~~~~gi~ip~p~~~~d~C~~g~~CPl~~G~~~~y~~~~~I~~~~P----  101 (130)
T d1nepa_          27 PCKLHRGQSYSVNVTFTSNTQS-QSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYP----  101 (130)
T ss_dssp             SEEEETTCEEEEEEEEEESSCB-SCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEECCTTSC----
T ss_pred             CCEeeCCCEEEEEEEEEcCccc-ceEEEEEEEEECCEEecccCCCCcccccCCcCCccCCceEEEEEEEEcchhhc----
Confidence            6779999999999999998875 5688777778889876421     11123333432  23  555554 23344    


Q ss_pred             eeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 026326          209 ARGLYSAKLKFEDDDRRCHMELNYSFEIK  237 (240)
Q Consensus       209 aRG~Y~akSkFvDDDk~~hL~~eWsfeI~  237 (240)
                       +++|+++...+|++++...=|.-..+|+
T Consensus       102 -~~~~~v~~~l~d~~~~~i~Cf~v~~~I~  129 (130)
T d1nepa_         102 -SIKVVVEWELTDDKNQRFFCWQIPIEVE  129 (130)
T ss_dssp             -SSEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             -cEEEEEEEEEEcCCCCEEEEEEEeeEEE
Confidence             5789999999999998766666666654

>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: GMP-PDE delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.03  E-value=0.44  Score=37.75  Aligned_cols=76  Identities=20%  Similarity=0.242  Sum_probs=57.9

Q ss_pred             EEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCC---CeeEecC--CCCCCceeeeeeeeeeeEEEEeC
Q 026326          148 FQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQRE---PYVHTLE--EETTPSGVLARGLYSAKLKFEDD  222 (240)
Q Consensus       148 Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e---~Y~~~fp--~EeAPSGmLaRG~Y~akSkFvDD  222 (240)
                      -.-.|.|.|. ++|.++|-+|.++=+|-.+..-.+-.|=--|++.   .+.|.+|  .+..|.-||+ |.-..-|.|.||
T Consensus        58 V~~~i~Fs~~-e~i~~Frmierhyfr~~lle~~dFeFGF~IP~S~NTwe~iye~p~~~~~~~~~~l~-g~~~~dt~yf~~  135 (149)
T d1kshb_          58 VSRELNFSST-EQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLT-GNVIIETKFFDD  135 (149)
T ss_dssp             EEEEEEEEES-SCEEEEEEEEEEEETTEEEEEEEEEEEEECTTEEEEEEEEEC-------CCSTTTT-TSEEEEEEEEET
T ss_pred             eceEEEEecC-cccccceEEEEEeecCceeeEEEeeeeeEecCCCcchhheeecCCccccchHHHhc-CCeEEEEEEEEC
Confidence            3557889985 6899999999999999999999999997779965   3555555  4478888888 666777888888


Q ss_pred             CCc
Q 026326          223 DRR  225 (240)
Q Consensus       223 Dk~  225 (240)
                      |.-
T Consensus       136 d~L  138 (149)
T d1kshb_         136 DLL  138 (149)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            653

>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.41  E-value=2.8  Score=32.71  Aligned_cols=37  Identities=16%  Similarity=0.181  Sum_probs=25.4

Q ss_pred             CCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 026326          199 EEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIK  237 (240)
Q Consensus       199 p~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~  237 (240)
                      |.=+-|+ +|..|+|+++..+ +++++...=.+-+|.|+
T Consensus       125 p~v~LP~-~l~~G~Y~v~~~~-~~~g~~l~Ci~~~~slk  161 (163)
T d2ag4a1         125 PDLELPS-WLTTGNYRIESVL-SSSGKRLGCIKIAASLK  161 (163)
T ss_dssp             CCCCCCT-TCSSEEEEEEEEE-EETTEEEEEEEEEEEEE
T ss_pred             ccccccC-ccCCceEEEEEEE-eCCCCEEEEEEEEEEEE
Confidence            3335677 8999999999997 44566554555555553